Query 028303
Match_columns 210
No_of_seqs 150 out of 1881
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:25:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 4.1E-42 8.8E-47 244.4 21.5 174 3-176 6-180 (205)
2 KOG0098 GTPase Rab2, small G p 100.0 8.1E-41 1.8E-45 235.2 21.3 209 1-209 1-216 (216)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 1.6E-40 3.4E-45 235.4 19.3 172 4-175 3-174 (200)
4 KOG0078 GTP-binding protein SE 100.0 2.2E-39 4.8E-44 233.6 22.6 175 2-176 8-182 (207)
5 PLN03108 Rab family protein; P 100.0 9.7E-39 2.1E-43 240.2 27.2 209 1-209 1-210 (210)
6 KOG0080 GTPase Rab18, small G 100.0 1.8E-39 4E-44 223.1 18.1 168 3-170 8-176 (209)
7 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 4E-39 8.7E-44 228.4 19.5 168 5-172 21-189 (221)
8 PLN03110 Rab GTPase; Provision 100.0 4.3E-37 9.3E-42 232.2 27.1 207 3-210 9-215 (216)
9 KOG0086 GTPase Rab4, small G p 100.0 4.7E-38 1E-42 214.5 17.8 207 2-208 5-212 (214)
10 KOG0087 GTPase Rab11/YPT3, sma 100.0 2.7E-37 5.9E-42 221.9 20.6 181 2-182 10-190 (222)
11 cd04120 Rab12 Rab12 subfamily. 100.0 3.1E-36 6.7E-41 224.5 25.3 184 7-190 1-186 (202)
12 cd04121 Rab40 Rab40 subfamily. 100.0 4.3E-36 9.3E-41 221.7 24.0 170 2-172 2-171 (189)
13 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.7E-36 1E-40 224.3 24.5 173 7-179 1-179 (201)
14 KOG0079 GTP-binding protein H- 100.0 4.7E-37 1E-41 208.5 14.8 181 3-184 5-185 (198)
15 cd04111 Rab39 Rab39 subfamily. 100.0 3E-35 6.4E-40 221.3 26.1 206 5-210 1-211 (211)
16 KOG0091 GTPase Rab39, small G 100.0 2.4E-36 5.3E-41 208.3 17.3 205 3-210 5-213 (213)
17 KOG0088 GTPase Rab21, small G 100.0 8.7E-37 1.9E-41 209.5 12.9 171 4-174 11-181 (218)
18 KOG0095 GTPase Rab30, small G 100.0 4.1E-36 9E-41 204.3 15.9 207 2-209 3-209 (213)
19 cd04125 RabA_like RabA-like su 100.0 1.3E-34 2.8E-39 214.4 25.0 186 7-210 1-186 (188)
20 cd04110 Rab35 Rab35 subfamily. 100.0 1.8E-34 4E-39 215.4 25.8 171 3-174 3-173 (199)
21 KOG0093 GTPase Rab3, small G p 100.0 1E-35 2.2E-40 201.7 16.7 173 2-174 17-189 (193)
22 cd04122 Rab14 Rab14 subfamily. 100.0 1.4E-34 2.9E-39 210.2 23.6 164 6-169 2-165 (166)
23 cd04144 Ras2 Ras2 subfamily. 100.0 1E-34 2.3E-39 215.3 22.6 185 8-210 1-188 (190)
24 cd01867 Rab8_Rab10_Rab13_like 100.0 2.7E-34 5.8E-39 208.8 23.0 166 4-169 1-166 (167)
25 cd04109 Rab28 Rab28 subfamily. 100.0 3.8E-34 8.3E-39 216.1 24.1 164 7-170 1-168 (215)
26 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 8.6E-34 1.9E-38 214.8 25.3 169 4-174 11-194 (232)
27 cd04112 Rab26 Rab26 subfamily. 100.0 5.3E-34 1.2E-38 211.6 23.6 165 7-171 1-166 (191)
28 cd04126 Rab20 Rab20 subfamily. 100.0 5.2E-34 1.1E-38 214.8 23.6 164 7-175 1-197 (220)
29 PTZ00369 Ras-like protein; Pro 100.0 4.8E-34 1E-38 211.5 23.1 170 4-174 3-173 (189)
30 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 5E-34 1.1E-38 209.7 22.0 163 4-168 3-180 (182)
31 cd04127 Rab27A Rab27a subfamil 100.0 7.4E-34 1.6E-38 208.9 22.9 168 3-170 1-179 (180)
32 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 8.8E-34 1.9E-38 207.0 22.4 167 6-173 2-169 (172)
33 KOG0394 Ras-related GTPase [Ge 100.0 1.2E-34 2.6E-39 203.7 17.0 170 4-173 7-183 (210)
34 cd01866 Rab2 Rab2 subfamily. 100.0 2.3E-33 4.9E-38 204.2 23.9 167 3-169 1-167 (168)
35 cd04133 Rop_like Rop subfamily 100.0 7E-34 1.5E-38 207.8 21.0 159 7-167 2-172 (176)
36 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.9E-33 4.1E-38 211.9 23.8 165 7-173 2-181 (222)
37 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.9E-33 4.2E-38 204.0 23.0 163 6-168 2-164 (166)
38 KOG0097 GTPase Rab14, small G 100.0 9.3E-34 2E-38 191.4 19.3 206 2-208 7-213 (215)
39 cd04117 Rab15 Rab15 subfamily. 100.0 2.2E-33 4.7E-38 202.9 22.3 160 7-166 1-160 (161)
40 cd01865 Rab3 Rab3 subfamily. 100.0 4E-33 8.7E-38 202.3 23.5 162 7-168 2-163 (165)
41 PF00071 Ras: Ras family; Int 100.0 3E-33 6.5E-38 202.2 22.7 161 8-168 1-161 (162)
42 cd04131 Rnd Rnd subfamily. Th 100.0 2.7E-33 5.8E-38 205.4 21.4 161 6-168 1-176 (178)
43 cd01868 Rab11_like Rab11-like. 100.0 7.1E-33 1.5E-37 200.9 23.4 164 4-167 1-164 (165)
44 cd04119 RJL RJL (RabJ-Like) su 100.0 5.3E-33 1.1E-37 201.7 22.5 162 7-168 1-167 (168)
45 cd01875 RhoG RhoG subfamily. 100.0 5.5E-33 1.2E-37 206.1 22.2 162 6-169 3-178 (191)
46 cd01864 Rab19 Rab19 subfamily. 100.0 1.2E-32 2.6E-37 199.7 22.7 163 4-166 1-164 (165)
47 PLN03118 Rab family protein; P 100.0 5E-32 1.1E-36 204.1 26.1 167 3-170 11-179 (211)
48 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.1E-32 2.5E-37 202.8 22.1 162 7-169 1-167 (182)
49 cd04113 Rab4 Rab4 subfamily. 100.0 1.9E-32 4.2E-37 197.8 22.1 160 7-166 1-160 (161)
50 cd04118 Rab24 Rab24 subfamily. 100.0 5.2E-32 1.1E-36 201.2 24.9 166 7-173 1-171 (193)
51 cd04136 Rap_like Rap-like subf 100.0 1.2E-32 2.6E-37 199.0 20.6 160 7-167 2-162 (163)
52 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.7E-32 3.7E-37 200.8 21.1 160 6-167 1-174 (175)
53 cd04132 Rho4_like Rho4-like su 100.0 4.1E-32 8.8E-37 200.8 22.5 166 7-174 1-173 (187)
54 smart00175 RAB Rab subfamily o 100.0 7.3E-32 1.6E-36 195.1 22.7 163 7-169 1-163 (164)
55 cd04175 Rap1 Rap1 subgroup. T 100.0 4.7E-32 1E-36 196.4 21.5 160 7-167 2-162 (164)
56 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1E-31 2.2E-36 195.8 23.2 162 8-169 2-166 (170)
57 cd00877 Ran Ran (Ras-related n 100.0 9.4E-32 2E-36 195.3 22.0 160 7-169 1-160 (166)
58 cd04106 Rab23_lke Rab23-like s 100.0 9.2E-32 2E-36 194.3 21.9 159 7-166 1-161 (162)
59 PLN03071 GTP-binding nuclear p 100.0 7E-32 1.5E-36 204.0 21.7 164 4-170 11-174 (219)
60 cd04116 Rab9 Rab9 subfamily. 100.0 1.6E-31 3.5E-36 194.7 22.8 163 3-166 2-169 (170)
61 cd01861 Rab6 Rab6 subfamily. 100.0 1.4E-31 3E-36 193.2 22.2 160 7-166 1-160 (161)
62 smart00173 RAS Ras subfamily o 100.0 1.1E-31 2.3E-36 194.4 21.6 161 7-168 1-162 (164)
63 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.8E-31 4E-36 193.1 22.1 161 6-167 2-163 (164)
64 cd01860 Rab5_related Rab5-rela 100.0 2.8E-31 6.1E-36 191.9 23.1 162 6-167 1-162 (163)
65 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.9E-31 4.2E-36 194.4 22.3 162 6-167 2-168 (170)
66 cd04176 Rap2 Rap2 subgroup. T 100.0 1.2E-31 2.7E-36 194.0 21.0 160 7-167 2-162 (163)
67 cd04140 ARHI_like ARHI subfami 100.0 1.7E-31 3.6E-36 193.8 21.6 159 7-166 2-163 (165)
68 cd01871 Rac1_like Rac1-like su 100.0 1.5E-31 3.3E-36 195.6 21.0 158 7-166 2-173 (174)
69 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.8E-31 6.1E-36 191.5 22.0 159 7-167 2-161 (162)
70 KOG0081 GTPase Rab27, small G 100.0 1.5E-33 3.2E-38 193.8 9.3 181 2-182 5-195 (219)
71 cd04124 RabL2 RabL2 subfamily. 100.0 3.8E-31 8.2E-36 191.2 22.1 160 7-170 1-160 (161)
72 cd04134 Rho3 Rho3 subfamily. 100.0 1.6E-31 3.5E-36 198.0 20.3 162 8-171 2-177 (189)
73 cd04123 Rab21 Rab21 subfamily. 100.0 9.1E-31 2E-35 188.8 22.5 161 7-167 1-161 (162)
74 cd04142 RRP22 RRP22 subfamily. 100.0 3.3E-31 7.1E-36 197.4 20.1 167 7-173 1-179 (198)
75 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.1E-30 2.3E-35 189.2 21.7 160 7-167 1-163 (164)
76 cd01862 Rab7 Rab7 subfamily. 100.0 1.9E-30 4.1E-35 189.2 22.8 165 7-171 1-170 (172)
77 cd04114 Rab30 Rab30 subfamily. 100.0 3E-30 6.6E-35 187.7 23.6 167 1-167 1-168 (169)
78 smart00176 RAN Ran (Ras-relate 100.0 1.3E-30 2.9E-35 193.9 21.6 156 12-170 1-156 (200)
79 cd01892 Miro2 Miro2 subfamily. 100.0 8.4E-31 1.8E-35 190.8 19.5 163 4-168 2-166 (169)
80 cd01863 Rab18 Rab18 subfamily. 100.0 3.6E-30 7.9E-35 185.8 21.9 159 7-166 1-160 (161)
81 cd04143 Rhes_like Rhes_like su 100.0 2.4E-30 5.2E-35 198.4 21.6 160 7-167 1-170 (247)
82 cd04177 RSR1 RSR1 subgroup. R 100.0 4.6E-30 1E-34 186.7 21.9 161 7-168 2-164 (168)
83 cd01873 RhoBTB RhoBTB subfamil 100.0 1.6E-30 3.5E-35 193.0 19.8 158 6-166 2-194 (195)
84 cd04146 RERG_RasL11_like RERG/ 100.0 2.5E-30 5.3E-35 187.6 19.4 160 8-168 1-164 (165)
85 cd00154 Rab Rab family. Rab G 100.0 7.1E-30 1.5E-34 183.1 21.5 158 7-164 1-158 (159)
86 smart00174 RHO Rho (Ras homolo 100.0 3.4E-30 7.4E-35 188.3 20.1 158 9-168 1-172 (174)
87 cd04103 Centaurin_gamma Centau 100.0 4.2E-30 9E-35 185.0 20.1 153 7-166 1-157 (158)
88 cd04148 RGK RGK subfamily. Th 100.0 6E-30 1.3E-34 193.7 21.7 164 7-172 1-167 (221)
89 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.1E-29 2.3E-34 185.7 20.9 157 7-165 1-171 (173)
90 cd04135 Tc10 TC10 subfamily. 100.0 9.9E-30 2.2E-34 185.8 20.3 159 7-167 1-173 (174)
91 cd04137 RheB Rheb (Ras Homolog 100.0 4.2E-29 9.1E-34 183.6 22.4 164 7-171 2-166 (180)
92 cd04139 RalA_RalB RalA/RalB su 100.0 4.5E-29 9.7E-34 180.4 22.0 161 7-168 1-162 (164)
93 KOG0083 GTPase Rab26/Rab37, sm 100.0 7.7E-32 1.7E-36 180.2 6.6 167 10-176 1-168 (192)
94 cd00876 Ras Ras family. The R 100.0 3.2E-29 7E-34 180.3 20.3 158 8-166 1-159 (160)
95 cd01870 RhoA_like RhoA-like su 100.0 1.6E-28 3.5E-33 179.6 20.4 159 7-167 2-174 (175)
96 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.7E-28 3.8E-33 180.8 20.4 167 6-175 3-177 (183)
97 cd04147 Ras_dva Ras-dva subfam 100.0 3.6E-28 7.9E-33 181.3 20.9 160 8-168 1-163 (198)
98 cd04149 Arf6 Arf6 subfamily. 100.0 1.4E-28 2.9E-33 179.0 17.9 155 4-165 7-167 (168)
99 PLN00223 ADP-ribosylation fact 100.0 1.5E-28 3.3E-33 180.7 18.1 160 4-170 15-180 (181)
100 KOG0395 Ras-related GTPase [Ge 100.0 2.5E-28 5.3E-33 180.5 18.8 166 5-171 2-168 (196)
101 cd00157 Rho Rho (Ras homology) 100.0 5.9E-28 1.3E-32 175.8 20.5 157 7-165 1-170 (171)
102 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 4E-29 8.8E-34 181.1 13.8 153 8-165 1-163 (164)
103 smart00177 ARF ARF-like small 100.0 4.8E-28 1E-32 177.2 19.3 156 5-167 12-173 (175)
104 cd04158 ARD1 ARD1 subfamily. 100.0 2.4E-28 5.3E-33 177.8 17.6 155 8-169 1-162 (169)
105 cd04129 Rho2 Rho2 subfamily. 100.0 9E-28 2E-32 177.6 20.5 165 7-173 2-178 (187)
106 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.6E-27 3.4E-32 177.4 21.3 148 7-154 1-176 (202)
107 PTZ00132 GTP-binding nuclear p 100.0 4.2E-27 9.2E-32 177.7 23.4 166 1-169 4-169 (215)
108 PTZ00133 ADP-ribosylation fact 100.0 9.9E-28 2.1E-32 176.6 19.4 160 5-171 16-181 (182)
109 cd04150 Arf1_5_like Arf1-Arf5- 100.0 7.1E-28 1.5E-32 173.7 18.0 152 7-165 1-158 (159)
110 cd04154 Arl2 Arl2 subfamily. 100.0 1.3E-27 2.8E-32 174.6 18.2 155 4-165 12-172 (173)
111 KOG4252 GTP-binding protein [S 100.0 9.7E-30 2.1E-34 178.3 6.4 170 3-173 17-186 (246)
112 cd01893 Miro1 Miro1 subfamily. 100.0 2.8E-27 6E-32 171.8 19.2 160 7-169 1-165 (166)
113 KOG0393 Ras-related small GTPa 100.0 5.4E-28 1.2E-32 175.3 11.5 166 5-172 3-183 (198)
114 cd04157 Arl6 Arl6 subfamily. 100.0 6.2E-27 1.3E-31 169.0 16.5 152 8-165 1-161 (162)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.1E-26 2.4E-31 169.9 17.7 154 5-165 14-173 (174)
116 PTZ00099 rab6; Provisional 100.0 7.4E-26 1.6E-30 165.4 20.8 141 29-169 3-143 (176)
117 cd04160 Arfrp1 Arfrp1 subfamil 100.0 1.7E-26 3.6E-31 167.6 17.1 152 8-165 1-166 (167)
118 cd00879 Sar1 Sar1 subfamily. 99.9 2.2E-26 4.8E-31 170.5 18.0 156 4-166 17-189 (190)
119 cd04161 Arl2l1_Arl13_like Arl2 99.9 4.7E-27 1E-31 170.8 13.7 151 8-165 1-166 (167)
120 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.9E-26 4E-31 166.2 15.9 152 8-165 1-159 (160)
121 PF00025 Arf: ADP-ribosylation 99.9 3E-26 6.5E-31 167.6 17.1 158 3-167 11-175 (175)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.6E-26 5.6E-31 165.2 15.6 151 8-165 1-157 (158)
123 cd04151 Arl1 Arl1 subfamily. 99.9 5.5E-26 1.2E-30 163.6 16.9 151 8-165 1-157 (158)
124 PLN00023 GTP-binding protein; 99.9 1E-25 2.2E-30 175.7 18.6 139 5-143 20-189 (334)
125 smart00178 SAR Sar1p-like memb 99.9 1.6E-25 3.5E-30 165.1 17.9 156 4-166 15-183 (184)
126 cd04159 Arl10_like Arl10-like 99.9 4.6E-25 1E-29 158.1 16.1 151 9-165 2-158 (159)
127 cd01890 LepA LepA subfamily. 99.9 1E-24 2.2E-29 160.1 17.3 154 8-167 2-176 (179)
128 cd01897 NOG NOG1 is a nucleola 99.9 1.5E-24 3.3E-29 157.5 16.9 156 7-167 1-167 (168)
129 TIGR00231 small_GTP small GTP- 99.9 6.5E-24 1.4E-28 151.7 19.4 158 6-164 1-160 (161)
130 cd01878 HflX HflX subfamily. 99.9 1.1E-24 2.4E-29 163.2 15.9 157 4-167 39-204 (204)
131 KOG0073 GTP-binding ADP-ribosy 99.9 5.4E-24 1.2E-28 147.3 17.8 161 4-171 14-181 (185)
132 cd01898 Obg Obg subfamily. Th 99.9 2.1E-24 4.6E-29 156.9 15.7 157 8-166 2-169 (170)
133 cd04171 SelB SelB subfamily. 99.9 2.8E-24 6.2E-29 155.2 16.3 152 7-165 1-163 (164)
134 PRK12299 obgE GTPase CgtA; Rev 99.9 1.2E-23 2.6E-28 167.4 19.4 163 6-169 158-329 (335)
135 cd04155 Arl3 Arl3 subfamily. 99.9 1.7E-23 3.8E-28 152.6 18.5 154 5-165 13-172 (173)
136 COG1100 GTPase SAR1 and relate 99.9 6.8E-23 1.5E-27 155.1 21.0 169 6-174 5-191 (219)
137 TIGR02528 EutP ethanolamine ut 99.9 7E-24 1.5E-28 149.9 13.7 134 8-164 2-141 (142)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.4E-23 5.1E-28 151.1 16.5 157 8-168 2-166 (168)
139 cd01891 TypA_BipA TypA (tyrosi 99.9 8E-24 1.7E-28 157.4 14.0 162 7-172 3-192 (194)
140 cd00882 Ras_like_GTPase Ras-li 99.9 8.8E-23 1.9E-27 144.6 18.2 153 11-164 1-156 (157)
141 cd01879 FeoB Ferrous iron tran 99.9 5.6E-23 1.2E-27 147.6 16.4 148 11-167 1-156 (158)
142 PF02421 FeoB_N: Ferrous iron 99.9 1.6E-23 3.4E-28 148.4 12.5 148 7-163 1-156 (156)
143 KOG1673 Ras GTPases [General f 99.9 6.4E-24 1.4E-28 145.7 9.8 164 6-170 20-188 (205)
144 PRK03003 GTP-binding protein D 99.9 3.7E-23 8E-28 172.6 15.2 180 5-195 37-226 (472)
145 TIGR03156 GTP_HflX GTP-binding 99.9 1.7E-22 3.8E-27 162.0 17.9 154 5-166 188-350 (351)
146 KOG0070 GTP-binding ADP-ribosy 99.9 8.7E-23 1.9E-27 144.8 14.2 159 4-169 15-179 (181)
147 TIGR02729 Obg_CgtA Obg family 99.9 3.2E-22 6.9E-27 159.1 18.3 160 6-167 157-328 (329)
148 TIGR00436 era GTP-binding prot 99.9 2.7E-22 5.8E-27 156.3 16.5 153 8-167 2-163 (270)
149 PF08477 Miro: Miro-like prote 99.9 1.8E-22 4E-27 138.4 13.6 114 8-122 1-119 (119)
150 PRK04213 GTP-binding protein; 99.9 6.2E-23 1.3E-27 153.4 11.6 151 5-168 8-192 (201)
151 cd01881 Obg_like The Obg-like 99.9 2.4E-22 5.1E-27 146.8 13.8 155 11-166 1-175 (176)
152 KOG0075 GTP-binding ADP-ribosy 99.9 1.9E-23 4.1E-28 142.1 7.2 158 6-169 20-183 (186)
153 cd04164 trmE TrmE (MnmE, ThdF, 99.9 5.3E-22 1.1E-26 142.1 15.2 146 7-167 2-156 (157)
154 PRK15494 era GTPase Era; Provi 99.9 5.8E-22 1.2E-26 158.7 16.7 155 4-168 50-216 (339)
155 PRK15467 ethanolamine utilizat 99.9 5.7E-22 1.2E-26 142.6 14.6 144 8-173 3-152 (158)
156 cd01889 SelB_euk SelB subfamil 99.9 4.3E-22 9.3E-27 147.8 14.1 158 7-168 1-186 (192)
157 KOG3883 Ras family small GTPas 99.9 3.5E-21 7.6E-26 132.0 16.6 167 5-171 8-178 (198)
158 cd00881 GTP_translation_factor 99.9 1.1E-21 2.3E-26 144.9 15.2 156 8-167 1-186 (189)
159 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3.1E-21 6.8E-26 158.9 19.2 154 5-172 202-364 (442)
160 TIGR01393 lepA GTP-binding pro 99.9 2.3E-21 4.9E-26 164.9 18.1 156 6-167 3-179 (595)
161 cd01894 EngA1 EngA1 subfamily. 99.9 1.1E-21 2.4E-26 140.5 13.1 145 10-166 1-156 (157)
162 TIGR00487 IF-2 translation ini 99.9 6.3E-21 1.4E-25 161.5 18.8 153 5-165 86-247 (587)
163 PRK03003 GTP-binding protein D 99.9 3.6E-21 7.8E-26 160.7 17.1 162 5-172 210-386 (472)
164 PRK11058 GTPase HflX; Provisio 99.9 5E-21 1.1E-25 156.9 17.4 158 7-170 198-364 (426)
165 PRK12297 obgE GTPase CgtA; Rev 99.9 1.8E-20 3.8E-25 152.9 20.3 159 7-170 159-329 (424)
166 cd01888 eIF2_gamma eIF2-gamma 99.9 2.2E-21 4.7E-26 145.2 13.5 159 7-167 1-198 (203)
167 PRK05291 trmE tRNA modificatio 99.9 4.6E-21 1E-25 158.6 16.7 148 6-169 215-371 (449)
168 TIGR03598 GTPase_YsxC ribosome 99.9 5.9E-21 1.3E-25 140.2 14.8 148 3-157 15-179 (179)
169 PRK00454 engB GTP-binding prot 99.9 1.6E-20 3.5E-25 139.7 17.1 158 4-168 22-194 (196)
170 TIGR03594 GTPase_EngA ribosome 99.9 3.1E-21 6.7E-26 159.8 14.3 177 8-195 1-187 (429)
171 cd04163 Era Era subfamily. Er 99.9 1.5E-20 3.3E-25 135.6 16.0 156 6-166 3-167 (168)
172 PRK00093 GTP-binding protein D 99.9 9.3E-21 2E-25 157.2 16.4 175 7-195 2-188 (435)
173 cd01895 EngA2 EngA2 subfamily. 99.9 2E-20 4.3E-25 136.0 16.2 155 6-166 2-173 (174)
174 TIGR03594 GTPase_EngA ribosome 99.9 1.5E-20 3.3E-25 155.7 17.5 159 5-170 171-346 (429)
175 PRK12296 obgE GTPase CgtA; Rev 99.9 2.5E-20 5.5E-25 153.9 18.5 163 6-171 159-343 (500)
176 TIGR00475 selB selenocysteine- 99.9 1.8E-20 4E-25 159.3 17.5 154 7-169 1-167 (581)
177 CHL00189 infB translation init 99.9 2.1E-20 4.6E-25 160.7 17.8 156 5-167 243-409 (742)
178 KOG0071 GTP-binding ADP-ribosy 99.9 3.1E-20 6.7E-25 125.6 14.0 156 5-167 16-177 (180)
179 PRK05306 infB translation init 99.9 4.2E-20 9.1E-25 160.1 18.3 153 5-166 289-450 (787)
180 PRK00089 era GTPase Era; Revie 99.9 3E-20 6.6E-25 146.5 16.0 158 6-168 5-171 (292)
181 PF00009 GTP_EFTU: Elongation 99.9 3.8E-21 8.3E-26 142.3 10.0 160 5-168 2-187 (188)
182 cd04105 SR_beta Signal recogni 99.9 9.4E-20 2E-24 136.3 17.5 117 8-125 2-123 (203)
183 KOG0076 GTP-binding ADP-ribosy 99.9 3.6E-21 7.7E-26 134.7 9.0 161 4-170 15-189 (197)
184 COG1160 Predicted GTPases [Gen 99.9 1.1E-20 2.3E-25 151.5 12.7 180 7-198 4-196 (444)
185 PRK09518 bifunctional cytidyla 99.9 2.8E-20 6.1E-25 162.0 16.2 179 6-195 275-465 (712)
186 PRK12298 obgE GTPase CgtA; Rev 99.8 1.1E-19 2.3E-24 147.5 18.4 162 7-170 160-335 (390)
187 PRK05433 GTP-binding protein L 99.8 6.5E-20 1.4E-24 156.2 17.9 162 1-168 2-184 (600)
188 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 7.5E-21 1.6E-25 134.9 8.9 161 5-168 9-169 (216)
189 cd00880 Era_like Era (E. coli 99.8 6.6E-20 1.4E-24 131.0 14.0 151 11-166 1-162 (163)
190 TIGR00437 feoB ferrous iron tr 99.8 1.3E-19 2.8E-24 154.2 16.6 146 13-167 1-154 (591)
191 COG2229 Predicted GTPase [Gene 99.8 5.7E-19 1.2E-23 125.3 16.5 155 4-166 8-176 (187)
192 COG1159 Era GTPase [General fu 99.8 3E-19 6.5E-24 136.2 15.8 159 4-168 4-172 (298)
193 PRK09554 feoB ferrous iron tra 99.8 5.9E-19 1.3E-23 153.6 18.8 153 6-167 3-167 (772)
194 PRK00093 GTP-binding protein D 99.8 6.8E-19 1.5E-23 146.1 18.1 158 5-170 172-346 (435)
195 TIGR00491 aIF-2 translation in 99.8 5.7E-19 1.2E-23 149.5 17.5 159 6-171 4-219 (590)
196 PRK12317 elongation factor 1-a 99.8 1.8E-19 3.8E-24 149.0 13.8 158 1-160 1-197 (425)
197 KOG4423 GTP-binding protein-li 99.8 3.8E-22 8.2E-27 141.0 -2.6 171 3-173 22-199 (229)
198 cd01876 YihA_EngB The YihA (En 99.8 1E-18 2.2E-23 126.3 14.7 150 8-166 1-169 (170)
199 PRK09518 bifunctional cytidyla 99.8 1.8E-18 4E-23 150.7 18.8 159 5-171 449-624 (712)
200 PRK10218 GTP-binding protein; 99.8 2.1E-18 4.5E-23 146.5 18.4 163 5-175 4-198 (607)
201 cd01896 DRG The developmentall 99.8 5.5E-18 1.2E-22 129.2 18.7 151 8-167 2-225 (233)
202 TIGR01394 TypA_BipA GTP-bindin 99.8 7E-19 1.5E-23 149.5 14.9 156 8-167 3-190 (594)
203 TIGR00483 EF-1_alpha translati 99.8 7.1E-19 1.5E-23 145.4 14.5 155 4-160 5-199 (426)
204 cd04166 CysN_ATPS CysN_ATPS su 99.8 6.7E-19 1.5E-23 132.2 11.9 149 8-159 1-185 (208)
205 TIGR03680 eif2g_arch translati 99.8 1.3E-18 2.7E-23 142.8 14.5 162 4-167 2-195 (406)
206 cd01884 EF_Tu EF-Tu subfamily. 99.8 4.8E-18 1E-22 126.0 16.2 148 6-157 2-172 (195)
207 PRK04000 translation initiatio 99.8 1.5E-18 3.3E-23 142.3 14.6 162 4-167 7-200 (411)
208 PRK04004 translation initiatio 99.8 6.3E-18 1.4E-22 143.6 18.8 160 5-171 5-221 (586)
209 PRK10512 selenocysteinyl-tRNA- 99.8 5.9E-18 1.3E-22 144.5 17.3 156 8-168 2-166 (614)
210 KOG0074 GTP-binding ADP-ribosy 99.8 1.6E-18 3.5E-23 117.4 10.3 156 4-165 15-176 (185)
211 COG1160 Predicted GTPases [Gen 99.8 7.4E-18 1.6E-22 135.3 15.6 162 5-172 177-355 (444)
212 cd04168 TetM_like Tet(M)-like 99.8 1.3E-17 2.9E-22 127.3 16.3 114 8-125 1-130 (237)
213 PF10662 PduV-EutP: Ethanolami 99.8 7.3E-18 1.6E-22 117.0 12.9 135 8-164 3-142 (143)
214 COG0486 ThdF Predicted GTPase 99.8 8.1E-18 1.8E-22 135.5 14.8 153 6-170 217-378 (454)
215 KOG0072 GTP-binding ADP-ribosy 99.8 5.3E-19 1.1E-23 120.1 6.3 160 4-170 16-181 (182)
216 cd04167 Snu114p Snu114p subfam 99.8 6.5E-18 1.4E-22 127.4 12.9 113 8-124 2-136 (213)
217 cd01883 EF1_alpha Eukaryotic e 99.8 3.6E-18 7.7E-23 129.3 10.3 148 8-157 1-194 (219)
218 PRK12736 elongation factor Tu; 99.8 3.1E-17 6.6E-22 134.2 16.0 147 4-154 10-179 (394)
219 PRK12735 elongation factor Tu; 99.8 4.6E-17 9.9E-22 133.2 15.4 159 4-166 10-201 (396)
220 COG2262 HflX GTPases [General 99.7 9.9E-17 2.2E-21 127.1 16.4 164 5-174 191-362 (411)
221 TIGR00485 EF-Tu translation el 99.7 7.4E-17 1.6E-21 132.0 15.1 148 3-154 9-179 (394)
222 COG0370 FeoB Fe2+ transport sy 99.7 1.1E-16 2.3E-21 134.1 15.8 157 6-171 3-167 (653)
223 KOG1707 Predicted Ras related/ 99.7 1.8E-17 3.8E-22 135.8 10.5 163 5-169 8-176 (625)
224 cd04169 RF3 RF3 subfamily. Pe 99.7 2.6E-16 5.7E-21 122.1 16.4 115 7-125 3-137 (267)
225 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 3.5E-17 7.5E-22 123.5 10.4 163 8-173 1-181 (232)
226 cd04165 GTPBP1_like GTPBP1-lik 99.7 2.4E-16 5.1E-21 119.4 14.9 154 8-165 1-220 (224)
227 COG0218 Predicted GTPase [Gene 99.7 5E-16 1.1E-20 112.6 15.9 157 4-168 22-197 (200)
228 CHL00071 tufA elongation facto 99.7 3.9E-16 8.5E-21 128.2 17.0 149 4-156 10-181 (409)
229 COG0532 InfB Translation initi 99.7 5.7E-16 1.2E-20 126.5 17.0 159 5-170 4-172 (509)
230 KOG1489 Predicted GTP-binding 99.7 2.7E-16 5.7E-21 120.6 13.9 156 7-166 197-365 (366)
231 cd04104 p47_IIGP_like p47 (47- 99.7 6.4E-16 1.4E-20 115.1 15.8 159 6-171 1-187 (197)
232 cd01885 EF2 EF2 (for archaea a 99.7 1.9E-16 4.1E-21 119.5 13.0 113 8-124 2-138 (222)
233 COG1084 Predicted GTPase [Gene 99.7 5.3E-16 1.1E-20 119.7 15.4 159 5-169 167-337 (346)
234 PLN00043 elongation factor 1-a 99.7 3.3E-16 7.2E-21 129.5 14.1 152 4-158 5-203 (447)
235 cd01886 EF-G Elongation factor 99.7 2E-16 4.4E-21 122.9 12.1 114 8-125 1-130 (270)
236 PRK05124 cysN sulfate adenylyl 99.7 4.4E-16 9.6E-21 129.8 14.8 153 4-159 25-216 (474)
237 cd01850 CDC_Septin CDC/Septin. 99.7 5.8E-16 1.3E-20 120.7 14.4 143 5-151 3-185 (276)
238 PLN03126 Elongation factor Tu; 99.7 1.2E-15 2.7E-20 126.8 16.9 148 4-155 79-249 (478)
239 KOG1423 Ras-like GTPase ERA [C 99.7 1.1E-15 2.5E-20 116.6 14.5 162 4-169 70-272 (379)
240 TIGR02034 CysN sulfate adenyly 99.7 5.7E-16 1.2E-20 127.1 13.7 149 7-158 1-187 (406)
241 cd04170 EF-G_bact Elongation f 99.7 1.7E-16 3.7E-21 123.6 10.1 115 8-126 1-131 (268)
242 PTZ00141 elongation factor 1- 99.7 1E-15 2.2E-20 126.7 15.1 152 4-158 5-203 (446)
243 PRK00741 prfC peptide chain re 99.7 1.2E-15 2.6E-20 128.3 15.5 116 5-124 9-144 (526)
244 PTZ00327 eukaryotic translatio 99.7 6.4E-16 1.4E-20 127.7 13.4 163 3-167 31-232 (460)
245 KOG0462 Elongation factor-type 99.7 5.2E-16 1.1E-20 126.5 12.3 160 4-167 58-234 (650)
246 PRK00049 elongation factor Tu; 99.7 2.8E-15 6E-20 122.7 16.7 147 4-154 10-179 (396)
247 COG1163 DRG Predicted GTPase [ 99.7 5.7E-15 1.2E-19 113.8 15.9 153 6-167 63-288 (365)
248 PLN03127 Elongation factor Tu; 99.7 6.4E-15 1.4E-19 121.9 15.9 144 4-151 59-225 (447)
249 PRK13351 elongation factor G; 99.6 3E-15 6.6E-20 130.5 14.3 118 4-125 6-139 (687)
250 PF01926 MMR_HSR1: 50S ribosom 99.6 1.1E-14 2.3E-19 99.4 13.9 106 8-120 1-116 (116)
251 KOG1145 Mitochondrial translat 99.6 9.9E-15 2.1E-19 119.1 15.9 155 5-167 152-315 (683)
252 TIGR00503 prfC peptide chain r 99.6 9.9E-15 2.2E-19 122.8 16.5 117 4-124 9-145 (527)
253 PRK05506 bifunctional sulfate 99.6 5.3E-15 1.2E-19 127.8 15.2 152 4-158 22-211 (632)
254 cd01899 Ygr210 Ygr210 subfamil 99.6 8.4E-15 1.8E-19 115.9 15.0 81 9-89 1-110 (318)
255 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1.1E-14 2.4E-19 108.4 14.8 159 7-169 1-185 (196)
256 KOG0077 Vesicle coat complex C 99.6 1.7E-15 3.7E-20 105.6 9.2 155 4-165 18-190 (193)
257 COG3596 Predicted GTPase [Gene 99.6 4.9E-15 1.1E-19 111.9 12.1 161 4-168 37-222 (296)
258 COG0536 Obg Predicted GTPase [ 99.6 1.5E-14 3.2E-19 112.3 13.7 164 7-171 160-336 (369)
259 PF09439 SRPRB: Signal recogni 99.6 3.7E-15 7.9E-20 108.0 9.3 116 6-125 3-126 (181)
260 COG0481 LepA Membrane GTPase L 99.6 1.9E-14 4.1E-19 115.8 14.2 159 4-168 7-186 (603)
261 COG5256 TEF1 Translation elong 99.6 1.9E-14 4.1E-19 114.3 12.1 155 3-159 4-202 (428)
262 PRK12739 elongation factor G; 99.6 5.2E-14 1.1E-18 122.7 16.0 116 4-125 6-139 (691)
263 COG4917 EutP Ethanolamine util 99.6 1.4E-14 3.1E-19 96.5 9.0 136 8-165 3-143 (148)
264 TIGR00484 EF-G translation elo 99.6 5E-14 1.1E-18 122.8 14.8 114 6-125 10-141 (689)
265 PRK09602 translation-associate 99.6 2.1E-13 4.5E-18 111.1 16.5 83 7-89 2-113 (396)
266 KOG1191 Mitochondrial GTPase [ 99.6 2.4E-14 5.3E-19 115.6 10.7 167 5-173 267-455 (531)
267 PRK09866 hypothetical protein; 99.6 5.5E-13 1.2E-17 112.0 18.8 108 56-165 231-350 (741)
268 cd00066 G-alpha G protein alph 99.5 2.6E-13 5.6E-18 108.0 14.7 119 53-171 159-314 (317)
269 KOG0090 Signal recognition par 99.5 4.9E-13 1.1E-17 97.3 12.8 113 7-124 39-158 (238)
270 TIGR00490 aEF-2 translation el 99.5 2.3E-13 5E-18 119.0 13.3 117 4-124 17-151 (720)
271 PRK12740 elongation factor G; 99.5 5.1E-13 1.1E-17 116.4 14.8 107 12-124 1-125 (668)
272 PRK00007 elongation factor G; 99.5 5.3E-13 1.2E-17 116.4 14.4 115 5-125 9-141 (693)
273 PRK14845 translation initiatio 99.5 1.7E-12 3.6E-17 115.8 16.9 145 18-169 473-674 (1049)
274 KOG3905 Dynein light intermedi 99.5 2.7E-12 5.8E-17 99.2 15.5 160 7-169 53-291 (473)
275 KOG1490 GTP-binding protein CR 99.5 3.9E-13 8.5E-18 108.9 10.8 167 5-174 167-347 (620)
276 smart00275 G_alpha G protein a 99.5 3.2E-12 6.8E-17 102.6 16.0 119 54-172 183-338 (342)
277 cd01853 Toc34_like Toc34-like 99.5 1.7E-12 3.6E-17 99.7 13.6 118 4-124 29-162 (249)
278 PF04548 AIG1: AIG1 family; I 99.5 1.2E-12 2.6E-17 98.6 12.0 161 7-170 1-188 (212)
279 COG5257 GCD11 Translation init 99.5 2.8E-13 6.1E-18 104.3 8.2 163 4-168 8-202 (415)
280 TIGR00991 3a0901s02IAP34 GTP-b 99.5 3.4E-12 7.3E-17 99.7 14.0 124 5-130 37-172 (313)
281 PTZ00258 GTP-binding protein; 99.5 3.3E-12 7.2E-17 103.2 14.5 86 4-89 19-126 (390)
282 COG1217 TypA Predicted membran 99.4 1.3E-12 2.9E-17 105.1 12.0 173 6-182 5-205 (603)
283 KOG1707 Predicted Ras related/ 99.4 2.8E-12 6.2E-17 105.6 14.0 160 4-168 423-583 (625)
284 KOG1532 GTPase XAB1, interacts 99.4 2.6E-12 5.6E-17 97.1 12.5 168 4-173 17-269 (366)
285 TIGR00101 ureG urease accessor 99.4 6.8E-12 1.5E-16 93.4 13.3 103 55-168 92-196 (199)
286 PF05783 DLIC: Dynein light in 99.4 7E-12 1.5E-16 103.7 14.5 164 7-173 26-269 (472)
287 PRK13768 GTPase; Provisional 99.4 2.5E-12 5.3E-17 99.3 10.8 110 56-167 98-246 (253)
288 PRK07560 elongation factor EF- 99.4 1E-11 2.3E-16 109.0 15.2 116 5-124 19-152 (731)
289 smart00010 small_GTPase Small 99.4 7.2E-12 1.5E-16 86.0 11.0 114 7-157 1-115 (124)
290 TIGR00157 ribosome small subun 99.4 1.3E-12 2.7E-17 100.4 7.6 96 66-165 24-120 (245)
291 COG2895 CysN GTPases - Sulfate 99.4 7.9E-12 1.7E-16 97.6 11.6 151 2-157 2-192 (431)
292 PLN00116 translation elongatio 99.4 3.6E-12 7.8E-17 113.2 11.0 117 4-124 17-163 (843)
293 PTZ00416 elongation factor 2; 99.4 4.8E-12 1E-16 112.2 11.2 117 4-124 17-157 (836)
294 KOG0461 Selenocysteine-specifi 99.4 5.4E-11 1.2E-15 92.8 15.4 172 4-179 5-200 (522)
295 PF05049 IIGP: Interferon-indu 99.4 1.5E-11 3.4E-16 98.4 12.1 156 5-167 34-217 (376)
296 PRK09601 GTP-binding protein Y 99.3 5.2E-11 1.1E-15 95.4 15.0 83 7-89 3-107 (364)
297 cd01882 BMS1 Bms1. Bms1 is an 99.3 5.1E-11 1.1E-15 90.5 13.8 140 5-156 38-184 (225)
298 KOG1144 Translation initiation 99.3 9.4E-12 2E-16 105.0 10.2 165 6-174 475-693 (1064)
299 PF03029 ATP_bind_1: Conserved 99.3 2.3E-12 5.1E-17 98.3 6.0 109 56-167 92-236 (238)
300 KOG0082 G-protein alpha subuni 99.3 1.2E-10 2.6E-15 92.3 15.5 124 50-173 190-349 (354)
301 TIGR00073 hypB hydrogenase acc 99.3 3.4E-11 7.3E-16 90.4 11.1 152 5-167 21-206 (207)
302 PRK09435 membrane ATPase/prote 99.3 6.3E-11 1.4E-15 94.2 12.6 111 54-175 148-267 (332)
303 PF00350 Dynamin_N: Dynamin fa 99.3 8.5E-11 1.8E-15 85.2 12.1 63 56-121 102-168 (168)
304 KOG3886 GTP-binding protein [S 99.3 9.2E-12 2E-16 91.9 6.9 147 6-153 4-164 (295)
305 cd01900 YchF YchF subfamily. 99.3 1.1E-10 2.4E-15 90.6 11.9 81 9-89 1-103 (274)
306 TIGR02836 spore_IV_A stage IV 99.3 3.1E-10 6.8E-15 91.3 14.6 143 5-152 16-219 (492)
307 KOG0458 Elongation factor 1 al 99.3 8.9E-11 1.9E-15 97.0 11.8 153 5-159 176-373 (603)
308 COG0480 FusA Translation elong 99.2 2E-10 4.4E-15 99.1 14.0 119 3-125 7-142 (697)
309 COG0378 HypB Ni2+-binding GTPa 99.2 1E-10 2.3E-15 84.6 9.9 150 6-167 13-200 (202)
310 KOG1486 GTP-binding protein DR 99.2 6.3E-10 1.4E-14 83.4 13.9 153 6-167 62-287 (364)
311 PF00735 Septin: Septin; Inte 99.2 7.3E-10 1.6E-14 86.6 14.2 140 5-149 3-182 (281)
312 COG0050 TufB GTPases - transla 99.2 2.1E-10 4.6E-15 87.7 10.7 175 4-182 10-211 (394)
313 COG4108 PrfC Peptide chain rel 99.2 3E-10 6.6E-15 91.1 11.9 118 6-127 12-149 (528)
314 TIGR00750 lao LAO/AO transport 99.2 2.5E-10 5.4E-15 90.4 11.5 104 54-168 126-238 (300)
315 smart00053 DYNc Dynamin, GTPas 99.2 3.9E-10 8.5E-15 85.9 11.9 118 5-125 25-206 (240)
316 KOG0410 Predicted GTP binding 99.2 5E-11 1.1E-15 92.2 6.6 156 6-173 178-346 (410)
317 TIGR00993 3a0901s04IAP86 chlor 99.2 2E-09 4.4E-14 91.2 15.2 120 4-125 116-250 (763)
318 COG3276 SelB Selenocysteine-sp 99.1 1.6E-09 3.4E-14 87.2 12.7 155 8-168 2-162 (447)
319 KOG0468 U5 snRNP-specific prot 99.1 9.7E-10 2.1E-14 92.2 11.2 116 4-123 126-261 (971)
320 KOG3887 Predicted small GTPase 99.1 8.2E-10 1.8E-14 82.3 9.2 163 7-172 28-206 (347)
321 COG0012 Predicted GTPase, prob 99.1 1.1E-08 2.5E-13 81.2 15.7 84 6-89 2-108 (372)
322 PF00503 G-alpha: G-protein al 99.1 2.6E-09 5.6E-14 87.6 12.1 114 53-166 234-388 (389)
323 cd01855 YqeH YqeH. YqeH is an 99.0 1.8E-09 3.9E-14 79.9 9.5 111 68-195 24-142 (190)
324 KOG1547 Septin CDC10 and relat 99.0 1.9E-09 4.1E-14 80.3 9.2 146 3-153 43-228 (336)
325 PRK10463 hydrogenase nickel in 99.0 1.5E-09 3.3E-14 84.3 8.9 55 112-166 231-287 (290)
326 cd01859 MJ1464 MJ1464. This f 99.0 1.7E-09 3.7E-14 77.5 7.3 94 69-168 3-96 (156)
327 COG5019 CDC3 Septin family pro 99.0 4.7E-09 1E-13 82.9 10.1 146 5-156 22-207 (373)
328 KOG2655 Septin family protein 99.0 7.4E-09 1.6E-13 82.2 10.4 144 5-152 20-201 (366)
329 PRK12289 GTPase RsgA; Reviewed 98.9 3E-09 6.6E-14 85.5 7.4 91 71-166 82-173 (352)
330 KOG0705 GTPase-activating prot 98.9 7.7E-09 1.7E-13 85.2 9.1 164 5-175 29-196 (749)
331 KOG0460 Mitochondrial translat 98.9 1.6E-08 3.4E-13 79.1 10.3 175 4-182 52-255 (449)
332 PRK12288 GTPase RsgA; Reviewed 98.9 7E-09 1.5E-13 83.4 8.5 87 76-165 118-205 (347)
333 PF03308 ArgK: ArgK protein; 98.9 2E-09 4.3E-14 81.7 3.9 107 55-173 122-235 (266)
334 COG1703 ArgK Putative periplas 98.8 4.4E-08 9.5E-13 75.6 10.6 109 54-174 143-260 (323)
335 cd01854 YjeQ_engC YjeQ/EngC. 98.8 2.4E-08 5.3E-13 78.6 9.1 87 73-164 73-160 (287)
336 KOG0099 G protein subunit Galp 98.8 1.5E-08 3.3E-13 76.5 7.1 71 53-123 200-281 (379)
337 TIGR03597 GTPase_YqeH ribosome 98.8 2.6E-08 5.6E-13 80.8 9.0 112 65-194 50-168 (360)
338 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.5E-08 3.2E-13 71.4 6.4 54 8-65 85-138 (141)
339 PRK00098 GTPase RsgA; Reviewed 98.8 2.7E-08 5.9E-13 78.7 8.3 85 75-163 77-162 (298)
340 cd01849 YlqF_related_GTPase Yl 98.8 3.3E-08 7.2E-13 70.7 8.0 112 80-195 1-115 (155)
341 KOG1487 GTP-binding protein DR 98.8 3.9E-08 8.5E-13 74.2 8.1 84 7-92 60-150 (358)
342 cd04178 Nucleostemin_like Nucl 98.8 3E-08 6.6E-13 72.1 6.9 55 6-64 117-171 (172)
343 cd01858 NGP_1 NGP-1. Autoanti 98.7 4.3E-08 9.4E-13 70.3 7.3 56 5-64 101-156 (157)
344 TIGR00092 GTP-binding protein 98.7 9.8E-08 2.1E-12 76.8 8.9 83 7-89 3-108 (368)
345 KOG1954 Endocytosis/signaling 98.7 2.5E-07 5.3E-12 73.3 10.5 122 3-127 55-227 (532)
346 KOG0466 Translation initiation 98.7 1.6E-08 3.4E-13 78.0 3.6 166 1-168 33-241 (466)
347 cd01856 YlqF YlqF. Proteins o 98.7 8.9E-08 1.9E-12 69.7 7.4 121 67-195 8-130 (171)
348 KOG2486 Predicted GTPase [Gene 98.7 7.8E-08 1.7E-12 73.3 7.2 155 4-165 134-313 (320)
349 KOG0467 Translation elongation 98.7 1E-07 2.2E-12 81.4 8.6 118 2-123 5-136 (887)
350 TIGR03596 GTPase_YlqF ribosome 98.7 1.7E-07 3.8E-12 73.4 9.4 125 63-195 5-133 (276)
351 cd01858 NGP_1 NGP-1. Autoanti 98.7 1E-07 2.2E-12 68.3 7.3 112 74-195 4-117 (157)
352 KOG0448 Mitofusin 1 GTPase, in 98.7 9.9E-07 2.1E-11 74.8 13.9 143 5-151 108-309 (749)
353 COG5258 GTPBP1 GTPase [General 98.7 3.1E-07 6.6E-12 73.1 10.3 158 5-167 116-337 (527)
354 KOG1491 Predicted GTP-binding 98.6 1.7E-07 3.8E-12 73.3 8.2 85 5-89 19-125 (391)
355 cd01856 YlqF YlqF. Proteins o 98.6 1.3E-07 2.7E-12 68.9 6.9 57 5-65 114-170 (171)
356 COG1618 Predicted nucleotide k 98.6 7.1E-06 1.5E-10 57.9 14.9 147 4-167 3-175 (179)
357 TIGR03596 GTPase_YlqF ribosome 98.6 1.9E-07 4.2E-12 73.1 7.5 57 5-65 117-173 (276)
358 KOG0447 Dynamin-like GTP bindi 98.6 2.9E-06 6.4E-11 70.5 14.3 134 4-140 306-508 (980)
359 PRK09563 rbgA GTPase YlqF; Rev 98.6 2.7E-07 5.8E-12 72.7 8.1 58 5-66 120-177 (287)
360 cd01859 MJ1464 MJ1464. This f 98.6 2.5E-07 5.4E-12 66.2 7.2 56 5-64 100-155 (156)
361 KOG0464 Elongation factor G [T 98.6 8.7E-08 1.9E-12 76.9 5.0 115 7-125 38-168 (753)
362 PRK09563 rbgA GTPase YlqF; Rev 98.6 3.5E-07 7.6E-12 72.0 8.5 126 62-195 7-136 (287)
363 cd01855 YqeH YqeH. YqeH is an 98.6 1.5E-07 3.3E-12 69.6 6.1 55 7-64 128-189 (190)
364 TIGR03348 VI_IcmF type VI secr 98.5 1.3E-06 2.8E-11 80.8 12.1 112 9-125 114-257 (1169)
365 COG1161 Predicted GTPases [Gen 98.5 2.5E-07 5.4E-12 73.9 6.5 56 6-65 132-187 (322)
366 PF09547 Spore_IV_A: Stage IV 98.5 3E-06 6.6E-11 68.6 12.5 142 6-152 17-219 (492)
367 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 4.3E-07 9.3E-12 63.9 6.8 78 72-155 5-84 (141)
368 PF03193 DUF258: Protein of un 98.5 1.5E-07 3.2E-12 67.2 4.3 59 8-69 37-101 (161)
369 cd01851 GBP Guanylate-binding 98.5 5.3E-06 1.1E-10 63.0 12.4 87 4-91 5-104 (224)
370 PRK13796 GTPase YqeH; Provisio 98.5 1.5E-06 3.2E-11 70.8 9.9 109 67-194 58-174 (365)
371 COG5192 BMS1 GTP-binding prote 98.5 2.7E-06 5.8E-11 71.0 11.0 135 5-152 68-210 (1077)
372 cd03112 CobW_like The function 98.4 2.2E-06 4.8E-11 61.5 8.8 64 54-123 86-158 (158)
373 KOG0085 G protein subunit Galp 98.4 8.3E-07 1.8E-11 66.2 6.5 123 51-173 195-354 (359)
374 cd01849 YlqF_related_GTPase Yl 98.4 8.6E-07 1.9E-11 63.4 6.3 56 5-64 99-154 (155)
375 PRK10416 signal recognition pa 98.4 4.7E-06 1E-10 66.4 10.9 143 6-160 114-302 (318)
376 PRK14974 cell division protein 98.4 8.8E-07 1.9E-11 70.9 6.4 95 55-161 223-323 (336)
377 PRK12288 GTPase RsgA; Reviewed 98.4 8.1E-07 1.8E-11 71.6 6.0 58 9-69 208-271 (347)
378 TIGR01425 SRP54_euk signal rec 98.3 8.5E-06 1.8E-10 67.1 11.6 86 54-149 182-273 (429)
379 TIGR00064 ftsY signal recognit 98.3 1.6E-05 3.5E-10 62.1 11.9 95 54-160 154-260 (272)
380 KOG1143 Predicted translation 98.3 2.9E-06 6.4E-11 67.5 7.4 151 5-159 166-379 (591)
381 PRK01889 GTPase RsgA; Reviewed 98.3 4.5E-06 9.7E-11 67.7 8.4 84 76-164 110-193 (356)
382 PRK12289 GTPase RsgA; Reviewed 98.3 1.7E-06 3.7E-11 69.8 5.7 56 9-67 175-236 (352)
383 KOG0463 GTP-binding protein GP 98.2 9.1E-06 2E-10 64.8 9.0 157 6-167 133-356 (641)
384 KOG3859 Septins (P-loop GTPase 98.2 8.9E-06 1.9E-10 62.4 8.5 60 5-64 41-104 (406)
385 TIGR00157 ribosome small subun 98.2 3.5E-06 7.6E-11 64.9 6.0 57 8-68 122-184 (245)
386 COG1162 Predicted GTPases [Gen 98.2 3.7E-06 8.1E-11 65.5 5.4 59 8-69 166-230 (301)
387 PRK13796 GTPase YqeH; Provisio 98.2 3.8E-06 8.3E-11 68.4 5.5 57 7-66 161-221 (365)
388 TIGR03597 GTPase_YqeH ribosome 98.1 6.5E-06 1.4E-10 66.9 6.6 125 7-140 155-293 (360)
389 KOG0465 Mitochondrial elongati 98.1 7.4E-06 1.6E-10 68.8 6.7 117 6-126 39-171 (721)
390 KOG1534 Putative transcription 98.1 8E-06 1.7E-10 60.1 5.5 111 56-168 99-251 (273)
391 cd01854 YjeQ_engC YjeQ/EngC. 98.1 7.7E-06 1.7E-10 64.5 5.9 60 7-69 162-227 (287)
392 COG3640 CooC CO dehydrogenase 98.0 6.5E-05 1.4E-09 56.4 9.8 76 56-144 135-212 (255)
393 COG3523 IcmF Type VI protein s 98.0 3.7E-05 8E-10 70.2 9.7 112 9-125 128-270 (1188)
394 PRK00098 GTPase RsgA; Reviewed 98.0 1.2E-05 2.6E-10 63.7 5.9 57 8-67 166-228 (298)
395 PRK13695 putative NTPase; Prov 98.0 0.00016 3.5E-09 52.6 11.4 23 7-29 1-23 (174)
396 PRK14722 flhF flagellar biosyn 98.0 0.00014 3.1E-09 59.1 11.2 139 7-149 138-315 (374)
397 PF00448 SRP54: SRP54-type pro 98.0 7.2E-05 1.6E-09 55.6 8.9 85 55-149 84-174 (196)
398 PRK12727 flagellar biosynthesi 98.0 0.00043 9.3E-09 58.5 14.2 91 54-156 428-523 (559)
399 KOG1424 Predicted GTP-binding 98.0 1.2E-05 2.6E-10 66.4 4.8 58 5-66 313-370 (562)
400 PRK14721 flhF flagellar biosyn 97.9 5.1E-05 1.1E-09 62.5 8.4 138 7-156 192-365 (420)
401 PF03266 NTPase_1: NTPase; In 97.9 4.7E-05 1E-09 55.1 7.1 135 8-156 1-163 (168)
402 cd03115 SRP The signal recogni 97.9 9E-05 2E-09 53.9 8.6 83 54-146 82-170 (173)
403 COG1162 Predicted GTPases [Gen 97.9 0.0001 2.2E-09 57.6 9.2 90 74-166 75-165 (301)
404 PRK11537 putative GTP-binding 97.9 0.00022 4.8E-09 57.0 11.3 85 55-149 91-186 (318)
405 KOG4273 Uncharacterized conser 97.9 0.00018 3.8E-09 54.6 9.9 161 6-170 4-224 (418)
406 cd03114 ArgK-like The function 97.9 0.00014 3.1E-09 51.6 9.0 58 54-122 91-148 (148)
407 COG0523 Putative GTPases (G3E 97.9 0.00037 7.9E-09 55.7 12.1 88 55-150 85-184 (323)
408 PRK11889 flhF flagellar biosyn 97.9 0.00017 3.8E-09 58.7 10.1 139 7-157 242-417 (436)
409 PF02492 cobW: CobW/HypB/UreG, 97.9 6.8E-05 1.5E-09 54.9 7.2 79 55-140 85-169 (178)
410 PRK00771 signal recognition pa 97.8 4.9E-05 1.1E-09 63.1 6.1 85 56-150 177-267 (437)
411 PF11111 CENP-M: Centromere pr 97.8 0.0019 4.1E-08 46.4 13.2 142 2-168 11-153 (176)
412 COG1419 FlhF Flagellar GTP-bin 97.8 0.0007 1.5E-08 55.1 12.1 132 7-148 204-371 (407)
413 KOG0469 Elongation factor 2 [T 97.8 0.00014 3.1E-09 60.2 8.0 131 5-139 18-179 (842)
414 cd03222 ABC_RNaseL_inhibitor T 97.7 0.00089 1.9E-08 48.9 11.1 86 8-104 27-117 (177)
415 PRK14723 flhF flagellar biosyn 97.7 0.00031 6.6E-09 61.9 9.8 139 8-156 187-362 (767)
416 TIGR00959 ffh signal recogniti 97.7 0.00031 6.7E-09 58.2 9.3 87 54-150 182-274 (428)
417 PRK10867 signal recognition pa 97.7 0.00036 7.8E-09 57.9 9.5 87 54-150 183-275 (433)
418 KOG0459 Polypeptide release fa 97.7 5.8E-05 1.3E-09 60.8 4.7 153 5-161 78-279 (501)
419 PRK06995 flhF flagellar biosyn 97.7 0.00048 1E-08 57.8 10.1 102 56-170 336-449 (484)
420 PRK12724 flagellar biosynthesi 97.6 0.00034 7.4E-09 57.5 8.6 133 7-149 224-393 (432)
421 cd02042 ParA ParA and ParB of 97.6 0.00064 1.4E-08 44.9 8.4 82 9-102 2-84 (104)
422 cd02038 FleN-like FleN is a me 97.6 0.00033 7.2E-09 49.1 7.1 106 10-123 4-109 (139)
423 KOG2484 GTPase [General functi 97.6 6.1E-05 1.3E-09 60.5 3.6 58 4-65 250-307 (435)
424 PRK05703 flhF flagellar biosyn 97.6 0.0011 2.4E-08 55.1 10.5 91 54-156 299-396 (424)
425 PF06858 NOG1: Nucleolar GTP-b 97.5 0.00059 1.3E-08 39.6 6.3 46 76-122 11-58 (58)
426 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.00099 2.1E-08 42.9 8.4 69 9-91 2-71 (99)
427 cd00009 AAA The AAA+ (ATPases 97.5 0.0009 2E-08 46.4 8.7 25 7-31 20-44 (151)
428 PRK12723 flagellar biosynthesi 97.5 0.0026 5.6E-08 52.2 12.2 91 54-156 254-351 (388)
429 PRK12726 flagellar biosynthesi 97.5 0.00076 1.7E-08 54.8 8.8 85 55-149 286-376 (407)
430 PRK06731 flhF flagellar biosyn 97.4 0.0016 3.4E-08 50.9 9.6 138 7-157 76-251 (270)
431 PF13207 AAA_17: AAA domain; P 97.4 0.00013 2.9E-09 49.6 3.3 22 8-29 1-22 (121)
432 PF13555 AAA_29: P-loop contai 97.4 0.00018 4E-09 42.7 3.1 22 8-29 25-46 (62)
433 PRK08118 topology modulation p 97.4 0.00016 3.4E-09 52.4 3.3 24 7-30 2-25 (167)
434 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00094 2E-08 46.3 6.8 24 7-30 23-46 (133)
435 TIGR02475 CobW cobalamin biosy 97.4 0.004 8.7E-08 50.4 11.5 22 8-29 6-27 (341)
436 KOG1533 Predicted GTPase [Gene 97.4 0.00014 3E-09 54.6 2.9 68 55-124 97-176 (290)
437 COG0563 Adk Adenylate kinase a 97.4 0.00016 3.6E-09 52.8 3.1 23 7-29 1-23 (178)
438 COG1161 Predicted GTPases [Gen 97.4 0.00048 1E-08 55.2 5.9 127 62-195 17-147 (322)
439 TIGR00235 udk uridine kinase. 97.4 0.00026 5.7E-09 53.1 4.2 29 1-29 1-29 (207)
440 cd03111 CpaE_like This protein 97.3 0.0014 3E-08 43.7 7.2 100 12-120 6-106 (106)
441 PF13671 AAA_33: AAA domain; P 97.3 0.00018 3.8E-09 50.4 3.0 21 9-29 2-22 (143)
442 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.0026 5.7E-08 44.8 8.8 23 8-30 28-50 (144)
443 cd03110 Fer4_NifH_child This p 97.3 0.0028 6.1E-08 46.2 9.3 85 53-146 91-175 (179)
444 KOG2485 Conserved ATP/GTP bind 97.3 0.0003 6.6E-09 54.9 4.2 60 5-65 142-206 (335)
445 PRK07261 topology modulation p 97.3 0.00022 4.7E-09 51.9 3.3 23 7-29 1-23 (171)
446 PF03215 Rad17: Rad17 cell cyc 97.3 0.0017 3.6E-08 55.3 8.9 22 8-29 47-68 (519)
447 PRK05480 uridine/cytidine kina 97.3 0.00037 8E-09 52.3 4.0 29 1-29 1-29 (209)
448 COG1116 TauB ABC-type nitrate/ 97.2 0.00026 5.5E-09 53.8 3.0 23 9-31 32-54 (248)
449 PRK10646 ADP-binding protein; 97.2 0.0027 5.8E-08 45.1 7.9 23 8-30 30-52 (153)
450 KOG0780 Signal recognition par 97.2 0.0012 2.5E-08 53.3 6.6 51 52-102 181-237 (483)
451 PF00005 ABC_tran: ABC transpo 97.2 0.00032 7E-09 48.8 3.1 23 8-30 13-35 (137)
452 PRK10751 molybdopterin-guanine 97.2 0.00043 9.4E-09 50.2 3.8 29 1-29 1-29 (173)
453 cd02019 NK Nucleoside/nucleoti 97.2 0.00041 8.9E-09 42.4 3.1 21 9-29 2-22 (69)
454 cd04178 Nucleostemin_like Nucl 97.2 0.0032 6.9E-08 45.8 8.2 44 80-125 1-44 (172)
455 KOG0066 eIF2-interacting prote 97.2 0.019 4.1E-07 47.5 13.2 28 4-31 611-638 (807)
456 COG1126 GlnQ ABC-type polar am 97.1 0.00052 1.1E-08 51.1 3.7 23 8-30 30-52 (240)
457 COG0541 Ffh Signal recognition 97.1 0.00046 9.9E-09 56.4 3.5 63 55-123 183-251 (451)
458 PRK05416 glmZ(sRNA)-inactivati 97.1 0.0092 2E-07 47.1 10.7 75 7-107 7-83 (288)
459 PF02367 UPF0079: Uncharacteri 97.1 0.00091 2E-08 45.7 4.5 24 7-30 16-39 (123)
460 KOG2423 Nucleolar GTPase [Gene 97.1 0.0002 4.4E-09 57.7 1.4 83 4-93 305-389 (572)
461 PTZ00088 adenylate kinase 1; P 97.1 0.00054 1.2E-08 52.2 3.7 29 1-29 1-29 (229)
462 COG0396 sufC Cysteine desulfur 97.1 0.00054 1.2E-08 51.4 3.5 25 9-33 33-57 (251)
463 COG1120 FepC ABC-type cobalami 97.1 0.00043 9.3E-09 53.3 3.0 21 9-29 31-51 (258)
464 COG1136 SalX ABC-type antimicr 97.1 0.00047 1E-08 52.0 3.0 24 8-31 33-56 (226)
465 PF13521 AAA_28: AAA domain; P 97.1 0.00036 7.8E-09 50.2 2.2 22 8-29 1-22 (163)
466 COG0802 Predicted ATPase or ki 97.1 0.0032 7E-08 44.2 6.8 24 8-31 27-50 (149)
467 PF00004 AAA: ATPase family as 97.0 0.0006 1.3E-08 46.8 3.1 22 9-30 1-22 (132)
468 COG0194 Gmk Guanylate kinase [ 97.0 0.00035 7.5E-09 50.8 1.9 24 7-30 5-28 (191)
469 COG1117 PstB ABC-type phosphat 97.0 0.00059 1.3E-08 50.8 3.1 22 8-29 35-56 (253)
470 PRK10078 ribose 1,5-bisphospho 97.0 0.00061 1.3E-08 50.2 3.3 23 8-30 4-26 (186)
471 KOG1970 Checkpoint RAD17-RFC c 97.0 0.0073 1.6E-07 51.0 9.7 21 9-29 113-133 (634)
472 PRK06217 hypothetical protein; 97.0 0.00063 1.4E-08 50.0 3.3 23 7-29 2-24 (183)
473 cd02036 MinD Bacterial cell di 97.0 0.019 4.1E-07 41.6 11.1 84 56-146 64-147 (179)
474 smart00382 AAA ATPases associa 97.0 0.00074 1.6E-08 46.4 3.4 27 7-33 3-29 (148)
475 cd00071 GMPK Guanosine monopho 97.0 0.00068 1.5E-08 47.4 3.1 21 9-29 2-22 (137)
476 PRK01889 GTPase RsgA; Reviewed 97.0 0.0008 1.7E-08 54.7 3.8 25 7-31 196-220 (356)
477 PRK03839 putative kinase; Prov 97.0 0.0007 1.5E-08 49.5 3.1 22 8-29 2-23 (180)
478 PRK04195 replication factor C 97.0 0.019 4.1E-07 48.8 12.0 25 6-30 39-63 (482)
479 PF05621 TniB: Bacterial TniB 97.0 0.0076 1.6E-07 47.4 8.8 104 5-122 60-191 (302)
480 cd03238 ABC_UvrA The excision 97.0 0.00077 1.7E-08 49.2 3.2 21 7-27 22-42 (176)
481 PF13238 AAA_18: AAA domain; P 97.0 0.00071 1.5E-08 46.2 2.9 21 9-29 1-21 (129)
482 COG3839 MalK ABC-type sugar tr 97.0 0.00067 1.4E-08 54.3 3.0 22 9-30 32-53 (338)
483 COG1121 ZnuC ABC-type Mn/Zn tr 96.9 0.00072 1.6E-08 51.9 3.0 22 8-29 32-53 (254)
484 TIGR02322 phosphon_PhnN phosph 96.9 0.00081 1.8E-08 49.1 3.1 22 8-29 3-24 (179)
485 PRK14530 adenylate kinase; Pro 96.9 0.00086 1.9E-08 50.6 3.3 23 7-29 4-26 (215)
486 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.00085 1.8E-08 50.6 3.3 23 8-30 32-54 (218)
487 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00086 1.9E-08 44.6 2.9 21 7-27 16-36 (107)
488 TIGR03263 guanyl_kin guanylate 96.9 0.00087 1.9E-08 48.9 3.1 22 8-29 3-24 (180)
489 PRK00300 gmk guanylate kinase; 96.9 0.0012 2.5E-08 49.4 3.8 23 7-29 6-28 (205)
490 cd02023 UMPK Uridine monophosp 96.9 0.00091 2E-08 49.7 3.1 22 9-30 2-23 (198)
491 PF07015 VirC1: VirC1 protein; 96.9 0.025 5.4E-07 42.9 10.7 102 55-161 84-187 (231)
492 PRK13949 shikimate kinase; Pro 96.9 0.001 2.3E-08 48.2 3.3 22 8-29 3-24 (169)
493 cd03225 ABC_cobalt_CbiO_domain 96.9 0.00098 2.1E-08 50.0 3.3 23 8-30 29-51 (211)
494 PRK14738 gmk guanylate kinase; 96.9 0.0012 2.6E-08 49.5 3.7 25 5-29 12-36 (206)
495 cd01131 PilT Pilus retraction 96.9 0.007 1.5E-07 45.0 7.7 22 9-30 4-25 (198)
496 cd03226 ABC_cobalt_CbiO_domain 96.9 0.001 2.2E-08 49.8 3.2 23 8-30 28-50 (205)
497 TIGR00960 3a0501s02 Type II (G 96.9 0.001 2.2E-08 50.1 3.2 23 8-30 31-53 (216)
498 PF07728 AAA_5: AAA domain (dy 96.9 0.0011 2.4E-08 46.2 3.2 22 8-29 1-22 (139)
499 TIGR01166 cbiO cobalt transpor 96.9 0.00096 2.1E-08 49.3 3.0 23 8-30 20-42 (190)
500 KOG0446 Vacuolar sorting prote 96.8 0.00068 1.5E-08 59.1 2.5 120 4-125 27-213 (657)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-42 Score=244.38 Aligned_cols=174 Identities=53% Similarity=0.921 Sum_probs=167.7
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
++|.+||+|+|+.|+|||.|+.||.+..|.+.+..|.+.++....+.++++.+++++|||+||++|+.+...|++.+|++
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe-EEEEecCCCCCHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFI 161 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~ 161 (210)
|+|||+++.+||.++..|+.++..+...++|.++|+||+|+.+...++.++++.++..++++ ++++||+++.|+.++|.
T Consensus 86 i~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~ 165 (205)
T KOG0084|consen 86 IFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFL 165 (205)
T ss_pred EEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhhccc
Q 028303 162 KTAAKILQNIQEGAL 176 (210)
Q Consensus 162 ~l~~~~~~~~~~~~~ 176 (210)
.|...+..+......
T Consensus 166 ~la~~lk~~~~~~~~ 180 (205)
T KOG0084|consen 166 TLAKELKQRKGLHVK 180 (205)
T ss_pred HHHHHHHHhcccCCC
Confidence 999998888776543
No 2
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-41 Score=235.25 Aligned_cols=209 Identities=75% Similarity=1.189 Sum_probs=186.9
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (210)
|++.+.+|++++|+.|+|||.|+.+|++..|.+.+..|.+.++....+.++++.+++++|||+|++.+.++...|++.+-
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 160 (210)
++|+|||+++.++|..+..|+..++++...+.-+++++||+|+...+.++.+|.+.|++++++.++++||++++++.+.|
T Consensus 81 GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred ceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccccC--Ccccc--cCCCCCCCCCCCCCcccCC---Ccc
Q 028303 161 IKTAAKILQNIQEGALDAVNDS--GIKVG--YGRGQGPSGARDGTVSQRG---GCC 209 (210)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~---~c~ 209 (210)
......+.+....+-......+ +++.+ --+.+.+..+++....+.+ |||
T Consensus 161 ~nta~~Iy~~~q~g~~~~~~~~k~k~k~~p~~~~~~~~~~~~~~~~~~~~~s~gcc 216 (216)
T KOG0098|consen 161 INTAKEIYRKIQDGVFDDINESKGKIKIGPQIRRIRVSIASSDMSGSEGGASDGCC 216 (216)
T ss_pred HHHHHHHHHHHHhcccccccccccceeecccccccccCcccccccccccccccCCC
Confidence 9999999999998777666655 34433 2223344444444444444 566
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-40 Score=235.42 Aligned_cols=172 Identities=44% Similarity=0.764 Sum_probs=163.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...+||+|+|..++|||||+.||..+.|.+...+|++..+....+.++...+++.||||+|++.|.++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
+|||+++.+||..++.|+..+.+...+++-+.+|+||+|+.+.+.+..+++..++...++.||++||+++.|+.++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999887778888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 028303 164 AAKILQNIQEGA 175 (210)
Q Consensus 164 ~~~~~~~~~~~~ 175 (210)
.+.+....++..
T Consensus 163 a~~lp~~~~~~~ 174 (200)
T KOG0092|consen 163 AEKLPCSDPQER 174 (200)
T ss_pred HHhccCcccccc
Confidence 999887766654
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-39 Score=233.59 Aligned_cols=175 Identities=53% Similarity=0.972 Sum_probs=168.8
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
.+++.+||+++|++++|||+++.+|..+.+...+..|.++++...++.+++..+.+++|||+|++.|..+...|++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
+++|||+++..||+++..|+..+..+...++|.++|+||+|+...+.++.+.++++|.++++.++|+||++|.||++.|-
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccc
Q 028303 162 KTAAKILQNIQEGAL 176 (210)
Q Consensus 162 ~l~~~~~~~~~~~~~ 176 (210)
.|.+.++.+.+....
T Consensus 168 ~La~~i~~k~~~~~~ 182 (207)
T KOG0078|consen 168 SLARDILQKLEDAEL 182 (207)
T ss_pred HHHHHHHhhcchhhh
Confidence 999999997776643
No 5
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=9.7e-39 Score=240.22 Aligned_cols=209 Identities=86% Similarity=1.338 Sum_probs=187.1
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (210)
|.+++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|
T Consensus 1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 88999999999999999999999999999888888888888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 160 (210)
++++|||++++.++..+..|+..+........|+++++||.|+.+.+.++.+++.++++.++++++++|++++.|++++|
T Consensus 81 ~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f 160 (210)
T PLN03108 81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160 (210)
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999888776655679999999999998877888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccccC-CcccccCCCCCCCCCCCCCcccCCCcc
Q 028303 161 IKTAAKILQNIQEGALDAVNDS-GIKVGYGRGQGPSGARDGTVSQRGGCC 209 (210)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~ 209 (210)
+++++.+.+...+.......++ ++.+....-++.+..+.++..|-+|||
T Consensus 161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
T PLN03108 161 IKTAAKIYKKIQDGVFDVSNESYGIKVGYGAIPGASGGRDGTSSQGGGCC 210 (210)
T ss_pred HHHHHHHHHHhhhccccccccccccccccCCCCCCCCCccccccCCCCCC
Confidence 9999999887765554444444 777777777778888999999999999
No 6
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=223.07 Aligned_cols=168 Identities=48% Similarity=0.864 Sum_probs=159.1
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
+...+||+++|.+|+|||||+.+|..+.|.+..+.|++.++..+.+.++++.+++.||||+|++.|+.+.+.|++.+.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
|+|||++.+++|..+..|.+++..+.. +++-.++|+||+|...++.++.++...|++++++.|+++||++.+++...|+
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe 167 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE 167 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence 999999999999999999999987764 6677789999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 028303 162 KTAAKILQN 170 (210)
Q Consensus 162 ~l~~~~~~~ 170 (210)
.|+..+++-
T Consensus 168 elveKIi~t 176 (209)
T KOG0080|consen 168 ELVEKIIET 176 (209)
T ss_pred HHHHHHhcC
Confidence 998888753
No 7
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-39 Score=228.43 Aligned_cols=168 Identities=41% Similarity=0.702 Sum_probs=158.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
+.+|++++|+.++||||||.|+..+.|...|..|++.++-..++.+.+..+++++|||+|||.|+.+.+.|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCC-CCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
|||+++..||++...|++.+....+. ++-+++|+||.||.+.+++..+++...++++++.|+++||+.|.|+.++|..|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI 180 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI 180 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence 99999999999999999999988875 47788999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHh
Q 028303 164 AAKILQNIQ 172 (210)
Q Consensus 164 ~~~~~~~~~ 172 (210)
..++.....
T Consensus 181 aa~l~~~~~ 189 (221)
T KOG0094|consen 181 AAALPGMEV 189 (221)
T ss_pred HHhccCccc
Confidence 777665544
No 8
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=4.3e-37 Score=232.17 Aligned_cols=207 Identities=48% Similarity=0.820 Sum_probs=174.2
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
+++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 34779999999999999999999999998888888889998888888999899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+.
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888776668999999999999877777888888999889999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccCCcccccCCCCCCCCCCCCCcccCCCccC
Q 028303 163 TAAKILQNIQEGALDAVNDSGIKVGYGRGQGPSGARDGTVSQRGGCCS 210 (210)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 210 (210)
|+..+.............. ....+....+++....+..+.+++||||
T Consensus 169 l~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 215 (216)
T PLN03110 169 ILLEIYHIISKKALAAQEA-AANSGLPGQGTTINVADTSGNNKRGCCS 215 (216)
T ss_pred HHHHHHHHhhccccccccC-cccccCcCcCCcccccCccCCCCCCCcC
Confidence 9999988765433222211 2223344444444333345778899996
No 9
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-38 Score=214.55 Aligned_cols=207 Identities=54% Similarity=0.894 Sum_probs=192.3
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
.|++.+|++++|+.|+|||.|+++|...++......|.+.++....+.+.++.++++||||+|++.|++....|++.+-+
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
.++|||+++.++|+.+..|+..++....+++-+++++||.|+.++++++..++..|+.+..+.+.++|+++|+|+.+.|-
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl 164 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 164 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccccC-CcccccCCCCCCCCCCCCCcccCCCc
Q 028303 162 KTAAKILQNIQEGALDAVNDS-GIKVGYGRGQGPSGARDGTVSQRGGC 208 (210)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c 208 (210)
...+.++.+++.++.++++.. +|.-|+--=++...-++....-++-|
T Consensus 165 ~c~~tIl~kIE~GElDPer~gsGIQYGdaslR~l~~p~s~r~~n~~~c 212 (214)
T KOG0086|consen 165 KCARTILNKIESGELDPERMGSGIQYGDASLRQLRQPRSARAVNPQPC 212 (214)
T ss_pred HHHHHHHHHHhhcCCCHHHcccccccchhhhhccCCcchhccCCCCCC
Confidence 999999999999999999977 99999877666655555445555556
No 10
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-37 Score=221.92 Aligned_cols=181 Identities=55% Similarity=0.922 Sum_probs=173.0
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
.+++.+||+++|++++|||-|+.||..+.|..+...|.+.++....+.++++.++.+||||+|++.|+....+|++.+.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
.++|||++...+|+++..|+.+++.+...++++++|+||+||.+.+.+..++++.++...+..++++||.+..|+.++|+
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE 169 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccccC
Q 028303 162 KTAAKILQNIQEGALDAVNDS 182 (210)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~ 182 (210)
.++..+.....+.........
T Consensus 170 ~~l~~I~~~vs~k~~~~~~~~ 190 (222)
T KOG0087|consen 170 RVLTEIYKIVSKKQLDENNDP 190 (222)
T ss_pred HHHHHHHHHHHHHhhhccccc
Confidence 999999999988766655543
No 11
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=3.1e-36 Score=224.49 Aligned_cols=184 Identities=41% Similarity=0.706 Sum_probs=160.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+.|+++|+.|+|||||+++|..+.+...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999999988999998988888889999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
|++++.+++++..|+..+......+.|+++|+||+|+.+.+.+..+++.+++++. ++.|+++||++|.|++++|++|++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887665567999999999999877888888899998875 788999999999999999999999
Q ss_pred HHHHHHhhccccccccC-CcccccCC
Q 028303 166 KILQNIQEGALDAVNDS-GIKVGYGR 190 (210)
Q Consensus 166 ~~~~~~~~~~~~~~~~~-~~~~~~~~ 190 (210)
.+.+..+........+. ...+.-+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (202)
T cd04120 161 DILKKMPLDILRNELSNSILSLQPEP 186 (202)
T ss_pred HHHHhCccccccccccchhhccCCCC
Confidence 88776555444444433 33444333
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=4.3e-36 Score=221.73 Aligned_cols=170 Identities=38% Similarity=0.744 Sum_probs=155.9
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
.+++.+||+|+|..|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus 2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 35678999999999999999999999998888888888888887878889999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
+|+|||++++.+++++..|+..+.... .+.|+|+|+||.|+.+.+.++.++++.+++..+++++++||++|.|++++|+
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT 160 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 999999999999999999999997654 5799999999999988778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 028303 162 KTAAKILQNIQ 172 (210)
Q Consensus 162 ~l~~~~~~~~~ 172 (210)
+|.+.+..+..
T Consensus 161 ~l~~~i~~~~~ 171 (189)
T cd04121 161 ELARIVLMRHG 171 (189)
T ss_pred HHHHHHHHhcC
Confidence 99988875444
No 13
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.7e-36 Score=224.35 Aligned_cols=173 Identities=38% Similarity=0.667 Sum_probs=152.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
+||+|+|++|+|||||+++|.+..+...+.+|.+.++....+.++ +..+.+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988888998888887778887 7888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc----CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHH
Q 028303 86 YDITRRETFNHLSSWLEDARQHA----NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAF 160 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~ 160 (210)
||++++.+++.+..|+..+.... ..++|+++|+||.|+.+......+++.+++...+ ..++++||+++.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999988876532 2578999999999997666778889999999988 689999999999999999
Q ss_pred HHHHHHHHHHHhhcccccc
Q 028303 161 IKTAAKILQNIQEGALDAV 179 (210)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~ 179 (210)
++|.+.+.........+..
T Consensus 161 ~~l~~~l~~~~~~~~~~~~ 179 (201)
T cd04107 161 RFLVKNILANDKNLQQAET 179 (201)
T ss_pred HHHHHHHHHhchhhHhhcC
Confidence 9999998876554443333
No 14
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.7e-37 Score=208.48 Aligned_cols=181 Identities=45% Similarity=0.778 Sum_probs=165.8
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
+++.++.+++|++|+|||+|+.+|..+.|...|..|++.++...++.+++..++++|||++|++.|+.+...+++..+++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
++|||+++.+||.+...|+..++..+. .+|-++|+||.|.++++.+..++++.++...++.+|++|+++++|+...|.-
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 999999999999999999999987654 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccCCc
Q 028303 163 TAAKILQNIQEGALDAVNDSGI 184 (210)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~~~~ 184 (210)
|.++++........+..+...+
T Consensus 164 it~qvl~~k~r~~~~~~r~~~~ 185 (198)
T KOG0079|consen 164 ITKQVLQAKLRESVEQQRADAV 185 (198)
T ss_pred HHHHHHHHHHhhcHHHHhhcce
Confidence 9999888774444333333333
No 15
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3e-35 Score=221.30 Aligned_cols=206 Identities=50% Similarity=0.855 Sum_probs=172.1
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 4689999999999999999999999988888888888887777766 466789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
+|||++++.+++++..|+..+..... ...|+++|+||.|+.+...+..+++..+++.++++++++||+++.|++++|+.
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998876644 45788999999999887778888899999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccC-CcccccCCCCCCC-CCCC-CCcccCCCccC
Q 028303 163 TAAKILQNIQEGALDAVNDS-GIKVGYGRGQGPS-GARD-GTVSQRGGCCS 210 (210)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-~~~~~~~~c~~ 210 (210)
|.+.+...+..+......+. +++-+..+++.=+ ..++ .+..+.+.|||
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
T cd04111 161 LTQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211 (211)
T ss_pred HHHHHHHHhhcCCCCccccccccccCCCcccccccCcccccccCCCCCCCC
Confidence 99999888877654444444 5555555544322 1222 45667788887
No 16
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.4e-36 Score=208.27 Aligned_cols=205 Identities=44% Similarity=0.751 Sum_probs=178.1
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
+++.+++.|+|++-+|||+|++.++.+++++-..||.+.++....+.+ ++..+++++|||+|++.|+++...|++++-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 468899999999999999999999999999999999999998877665 6778899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeE-EEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHAN-PNMSI-MLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~-ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 159 (210)
+++|||+++..||+++..|......... +..++ .+|++|+|+...++++.+|++.++..++..|+++|++++.|+++.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 9999999999999999999998877765 44454 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccC-CcccccCCCCCCCCCCCCCcccCCCccC
Q 028303 160 FIKTAAKILQNIQEGALDAVNDS-GIKVGYGRGQGPSGARDGTVSQRGGCCS 210 (210)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 210 (210)
|..|.+.+...+.++.+.....- +++.+. +++...+-.-+++.+.|||
T Consensus 165 F~mlaqeIf~~i~qGeik~edgw~gvKSsr---pn~i~~s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQGEIKLEDGWGGVKSSR---PNQIPRSPSRKQPSKPCQC 213 (213)
T ss_pred HHHHHHHHHHHHhcCceeeeeccccccccC---CCcCCCcccccCCCCCCCC
Confidence 99999999999999887766654 544422 2223323344667778876
No 17
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.7e-37 Score=209.49 Aligned_cols=171 Identities=35% Similarity=0.698 Sum_probs=161.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
.+.+||+++|..-+|||||+-|+..++|......|....+..+.+.+++....++||||+|++.|..+-+.|++.+++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 36799999999999999999999999999999988888888888999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
+|||+++.+||+.++.|...++......+-+++|+||+|+++++.++.+++..++...++.|+++||+++.||.++|+.|
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~L 170 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESL 170 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHH
Confidence 99999999999999999999999988788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 028303 164 AAKILQNIQEG 174 (210)
Q Consensus 164 ~~~~~~~~~~~ 174 (210)
..+.+......
T Consensus 171 t~~MiE~~s~~ 181 (218)
T KOG0088|consen 171 TAKMIEHSSQR 181 (218)
T ss_pred HHHHHHHhhhc
Confidence 99888776543
No 18
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-36 Score=204.34 Aligned_cols=207 Identities=41% Similarity=0.704 Sum_probs=183.6
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
+|++.+||+++|..|+|||.|+++|+.+.|++....|++.++..+++.+++.+++++||||+|++.|+++...|++.+++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
+|+|||++..++|+-+..|+..+..+...++--|+|+||.|+.+++++..+.+++|.+.....|.++||++-.|++.+|.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 99999999999999999999999999888888899999999999989998889999998888899999999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCcccccCCCCCCCCCCCCCcccCCCcc
Q 028303 162 KTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPSGARDGTVSQRGGCC 209 (210)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 209 (210)
.+.-.+.......+...+.+..+-.++ .++++++--+--+.|...||
T Consensus 163 ~~a~rli~~ar~~d~v~~~~a~a~~~~-seg~si~l~s~aqt~~~~cc 209 (213)
T KOG0095|consen 163 DLACRLISEARQNDLVNNVSAPAPNSS-SEGKSIKLISYAQTQLLTCC 209 (213)
T ss_pred HHHHHHHHHHHhccchhhccccCcccc-CCCCcccchhHHHHHHhccc
Confidence 999999988888776555444443333 55566654444456667787
No 19
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.3e-34 Score=214.45 Aligned_cols=186 Identities=42% Similarity=0.682 Sum_probs=162.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998878888888888778888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
|++++.++..+..|+..+........|+++++||.|+.+...+..+++..++...+++++++||+++.|++++|++|++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998887665668999999999998777778888888988888999999999999999999999999
Q ss_pred HHHHHhhccccccccCCcccccCCCCCCCCCCCCCcccCCCccC
Q 028303 167 ILQNIQEGALDAVNDSGIKVGYGRGQGPSGARDGTVSQRGGCCS 210 (210)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 210 (210)
+..+..... .+-.+..++..|..|||
T Consensus 161 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~ 186 (188)
T cd04125 161 IIKRLEEQE------------------LSPKNIKQQFKKKNNCF 186 (188)
T ss_pred HHHHhhcCc------------------CCccccccccccccCcc
Confidence 876554432 11124556667777775
No 20
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.8e-34 Score=215.37 Aligned_cols=171 Identities=46% Similarity=0.785 Sum_probs=154.1
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
+++.+||+|+|++|+|||||+++|.+..+...+.+|.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 56789999999999999999999999998888888888888777788888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
++|||++++.++..+..|+..+.... ...|+++|+||+|+.+...+..+++..++...+++++++|++++.|++++|++
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 99999999999999999999886654 46899999999999877777888888899888899999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 028303 163 TAAKILQNIQEG 174 (210)
Q Consensus 163 l~~~~~~~~~~~ 174 (210)
|.+.++....+.
T Consensus 162 l~~~~~~~~~~~ 173 (199)
T cd04110 162 ITELVLRAKKDN 173 (199)
T ss_pred HHHHHHHhhhcc
Confidence 999998665544
No 21
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-35 Score=201.71 Aligned_cols=173 Identities=41% Similarity=0.790 Sum_probs=164.6
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
.+++.+|++++|+..+|||||+.++.+..|...+..|.+.++..+++.-..+.+++++|||+|++.++.+...+++++++
T Consensus 17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg 96 (193)
T KOG0093|consen 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG 96 (193)
T ss_pred cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence 46789999999999999999999999999999999999999999988777788999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
+|++||+++.+|+..+..|.-.+....-.+.|+|+++||+|+..++.++.+.++.+++++|..||++|++.+.|+.++|+
T Consensus 97 fiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe 176 (193)
T KOG0093|consen 97 FILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFE 176 (193)
T ss_pred EEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHH
Confidence 99999999999999999999999888878999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 028303 162 KTAAKILQNIQEG 174 (210)
Q Consensus 162 ~l~~~~~~~~~~~ 174 (210)
.++..+-+.+.+.
T Consensus 177 ~lv~~Ic~kmses 189 (193)
T KOG0093|consen 177 RLVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHHhhhh
Confidence 9999888877654
No 22
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.4e-34 Score=210.18 Aligned_cols=164 Identities=68% Similarity=1.104 Sum_probs=151.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
.+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999999888888888888877788899899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
||++++.+++.+..|+..+......+.|+++|+||+|+.+...++.+++..++...+++++++||++|.|++++|..+.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887766667899999999999887778888999999999999999999999999999999998
Q ss_pred HHHH
Q 028303 166 KILQ 169 (210)
Q Consensus 166 ~~~~ 169 (210)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 7754
No 23
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1e-34 Score=215.25 Aligned_cols=185 Identities=37% Similarity=0.625 Sum_probs=156.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d 87 (210)
||+|+|.+|+|||||+++|..+.+...+.++.+..+. ....+++..+.+.+|||||++.+..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 5899999999999999999999888877777665543 345678888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303 88 ITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
++++.+++.+..|+..+..... .+.|+++|+||+|+.+...+...++..++...+++++++||+++.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888866542 4689999999999987777788888888888889999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCcccccCCCCCCCCCCCCCcccCCCccC
Q 028303 165 AKILQNIQEGALDAVNDSGIKVGYGRGQGPSGARDGTVSQRGGCCS 210 (210)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 210 (210)
+.+......+. .+-.+..-++.+|++||+
T Consensus 160 ~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 160 RALRQQRQGGQ-----------------GPKGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHhhcccC-----------------CCcCCCCCcccccccCce
Confidence 98876665542 123334445777778875
No 24
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.7e-34 Score=208.84 Aligned_cols=166 Identities=55% Similarity=0.986 Sum_probs=152.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999999999999988888888887777888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887655679999999999998777778888889999889999999999999999999999
Q ss_pred HHHHHH
Q 028303 164 AAKILQ 169 (210)
Q Consensus 164 ~~~~~~ 169 (210)
.+.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 988764
No 25
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=3.8e-34 Score=216.08 Aligned_cols=164 Identities=35% Similarity=0.585 Sum_probs=148.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC-EEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
+||+++|++|+|||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999999999999888887787765 578999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 86 YDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
||+++++++.++..|+..+..... .+.|+++|+||.|+.+.+.+..+++..++..++++++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999998876642 35689999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028303 163 TAAKILQN 170 (210)
Q Consensus 163 l~~~~~~~ 170 (210)
|.+.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988764
No 26
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=8.6e-34 Score=214.81 Aligned_cols=169 Identities=25% Similarity=0.455 Sum_probs=149.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...+||+|+|++|+|||||+++|....|...+.+|.+..+.. .+.+++..+.+.||||+|++.|..++..+++.+|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 356899999999999999999999999999999998766643 4778999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEe
Q 028303 84 LVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEAS 149 (210)
Q Consensus 84 ~V~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s 149 (210)
+|||++++.+++++ ..|+..+.... .+.|+|+|+||.|+.+ ...++.++++++++..++ .|+++|
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 99999999999984 78998887654 4789999999999964 256888999999999998 699999
Q ss_pred cCCCC-CHHHHHHHHHHHHHHHHhhc
Q 028303 150 ARTAQ-NVEEAFIKTAAKILQNIQEG 174 (210)
Q Consensus 150 a~~~~-~i~~~~~~l~~~~~~~~~~~ 174 (210)
|+++. +++++|+.++..+++.....
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~~~~~ 194 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNKLSPP 194 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHhcccc
Confidence 99997 89999999999887654443
No 27
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.3e-34 Score=211.62 Aligned_cols=165 Identities=47% Similarity=0.851 Sum_probs=147.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
+||+|+|++|+|||||+++|.+..+.. .+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988754 5667777777776778888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
||++++.+++++..|+..+......+.|+++|+||.|+...+.+..+++..++..++++|+++||+++.|++++|++|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999888776567899999999999766677778888999888999999999999999999999999
Q ss_pred HHHHHH
Q 028303 166 KILQNI 171 (210)
Q Consensus 166 ~~~~~~ 171 (210)
.+....
T Consensus 161 ~~~~~~ 166 (191)
T cd04112 161 ELKHRK 166 (191)
T ss_pred HHHHhc
Confidence 887654
No 28
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=5.2e-34 Score=214.80 Aligned_cols=164 Identities=33% Similarity=0.545 Sum_probs=141.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|.+|+|||||+++|..+.+.. +.++.+..+....+ ..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 45666655543322 4678999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC-------------------CCCCCHHHHHHHHHHcC-----
Q 028303 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-------------------RRAVSKEEGEQFAKENG----- 142 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 142 (210)
|++++.++.++..|+..+......+.|+|+|+||+|+.+ .+.+..+++..++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999988888765556799999999999975 56788899999999876
Q ss_pred ---------CeEEEEecCCCCCHHHHHHHHHHHHHHHHhhcc
Q 028303 143 ---------LLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 175 (210)
Q Consensus 143 ---------~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~ 175 (210)
++|+++||++|.|++++|+.+++.++....+..
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~ 197 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQR 197 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 689999999999999999999998887666554
No 29
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=4.8e-34 Score=211.53 Aligned_cols=170 Identities=38% Similarity=0.611 Sum_probs=149.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 3469999999999999999999999988888878776555 455678888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+...+..+++..++...+.+++++||+++.|+.++|++
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999988866543 57899999999999776677777888888888899999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 028303 163 TAAKILQNIQEG 174 (210)
Q Consensus 163 l~~~~~~~~~~~ 174 (210)
|++.+.+..++.
T Consensus 162 l~~~l~~~~~~~ 173 (189)
T PTZ00369 162 LVREIRKYLKED 173 (189)
T ss_pred HHHHHHHHhhcc
Confidence 999887765544
No 30
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=5e-34 Score=209.71 Aligned_cols=163 Identities=28% Similarity=0.519 Sum_probs=146.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...+||+++|++|+|||||+++|..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 46799999999999999999999999998888888876654 55778999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEe
Q 028303 84 LVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEAS 149 (210)
Q Consensus 84 ~V~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s 149 (210)
+|||++++.+++++ ..|+..+.... ++.|+++|+||.|+.+ ...++.+++.++++..++ +|+++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 78998887764 5789999999999864 245888999999999995 899999
Q ss_pred cCCCCC-HHHHHHHHHHHHH
Q 028303 150 ARTAQN-VEEAFIKTAAKIL 168 (210)
Q Consensus 150 a~~~~~-i~~~~~~l~~~~~ 168 (210)
|+++.| ++++|+.+++.++
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 161 ALQSENSVRDIFHVATLACV 180 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 999998 9999999988654
No 31
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=7.4e-34 Score=208.85 Aligned_cols=168 Identities=41% Similarity=0.790 Sum_probs=150.3
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC----------CEEEEEEEEecCCcchhhhhh
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID----------GRPIKLQIWDTAGQESFRSIT 72 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~ 72 (210)
+++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+. +..+.+.+||+||++.+..++
T Consensus 1 ~~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 1 YDYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence 3578999999999999999999999999988888888887776666554 456889999999999999999
Q ss_pred HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecC
Q 028303 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR 151 (210)
Q Consensus 73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 151 (210)
..+++.+|++++|||++++.++.++..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.+++...+++++++||+
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 999999999999999999999999999998887654 2578999999999998777788888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 028303 152 TAQNVEEAFIKTAAKILQN 170 (210)
Q Consensus 152 ~~~~i~~~~~~l~~~~~~~ 170 (210)
++.|++++|+.|.+.+.++
T Consensus 161 ~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 161 TGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999888754
No 32
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=8.8e-34 Score=207.05 Aligned_cols=167 Identities=32% Similarity=0.542 Sum_probs=148.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
.+||+|+|.+|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 479999999999999999999999998888888765453 4467888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303 86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+.++.+++..+++..+++++++||+++.|++++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999998888776653 35799999999999987777888899999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 028303 165 AKILQNIQE 173 (210)
Q Consensus 165 ~~~~~~~~~ 173 (210)
+.+.+..+.
T Consensus 161 ~~~~~~~~~ 169 (172)
T cd04141 161 REIRRKESM 169 (172)
T ss_pred HHHHHhccC
Confidence 988775443
No 33
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=203.72 Aligned_cols=170 Identities=38% Similarity=0.694 Sum_probs=158.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...+||.++|++|+|||||+++|...+|...+..|++.++..+.+.+++..+.++||||+|++.|.++...+++.+|..+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCCC--CCCCHHHHHHHHHHc-CCeEEEEecCCCCCH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHR--RAVSKEEGEQFAKEN-GLLFLEASARTAQNV 156 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i 156 (210)
+|||++++.+|+++..|...+..... ...|.|+++||+|+.+. ++++...++.++... +++||++|||...|+
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV 166 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence 99999999999999999999877654 45899999999999763 788999999999976 489999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 028303 157 EEAFIKTAAKILQNIQE 173 (210)
Q Consensus 157 ~~~~~~l~~~~~~~~~~ 173 (210)
.+.|+.+.+.++.....
T Consensus 167 ~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 167 DEAFEEIARRALANEDR 183 (210)
T ss_pred HHHHHHHHHHHHhccch
Confidence 99999999998887664
No 34
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=2.3e-33 Score=204.19 Aligned_cols=167 Identities=85% Similarity=1.327 Sum_probs=153.1
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
|++.+||+|+|++|+|||||++++.+..+...+.++.+.++....+.+++....+.+||+||++.+..+...+++.+|++
T Consensus 1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 56789999999999999999999999998888888888888888888888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
++|||++++.++..+..|+..+.....++.|+++|+||.|+.+...++.++++.++...++.++++|++++.|++++|.+
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776678999999999999876777888899999989999999999999999999999
Q ss_pred HHHHHHH
Q 028303 163 TAAKILQ 169 (210)
Q Consensus 163 l~~~~~~ 169 (210)
+.+.+.+
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9888754
No 35
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=7e-34 Score=207.78 Aligned_cols=159 Identities=33% Similarity=0.647 Sum_probs=143.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||+.++..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 79999999999999999999999998888998876664 45678889999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCCCC----------CCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 028303 87 DITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHRR----------AVSKEEGEQFAKENGL-LFLEASARTAQ 154 (210)
Q Consensus 87 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 154 (210)
|++++.||+++ ..|+..+.... .+.|+++|+||+|+.+++ .++.+++.++++..++ .|+++||+++.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999887654 479999999999996543 4778899999999987 59999999999
Q ss_pred CHHHHHHHHHHHH
Q 028303 155 NVEEAFIKTAAKI 167 (210)
Q Consensus 155 ~i~~~~~~l~~~~ 167 (210)
|++++|+.+++.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999875
No 36
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.9e-33 Score=211.93 Aligned_cols=165 Identities=27% Similarity=0.504 Sum_probs=142.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+|+|++|+|||||+++|....+...+.+|.+..+. ..+.+++..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999999889998876664 45778999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEecCC
Q 028303 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASART 152 (210)
Q Consensus 87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 152 (210)
|++++++++++. .|...+.. ...+.|+|+|+||+|+.+. ..++.+++..++++.++ .|+++||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999985 45555443 3467999999999999642 23677889999999985 899999999
Q ss_pred CCC-HHHHHHHHHHHHHHHHhh
Q 028303 153 AQN-VEEAFIKTAAKILQNIQE 173 (210)
Q Consensus 153 ~~~-i~~~~~~l~~~~~~~~~~ 173 (210)
+.+ ++++|+.+....+.....
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~~ 181 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGHR 181 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccCC
Confidence 885 999999999987665443
No 37
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.9e-33 Score=204.04 Aligned_cols=163 Identities=53% Similarity=0.939 Sum_probs=149.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999998888888888888878888888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
||+++++++..+..|+..+......+.|+++++||.|+.+...+..+++..++...+++++++|++++.|++++|+.|.+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999887765567899999999999877778888899999999999999999999999999999998
Q ss_pred HHH
Q 028303 166 KIL 168 (210)
Q Consensus 166 ~~~ 168 (210)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 775
No 38
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-34 Score=191.41 Aligned_cols=206 Identities=60% Similarity=0.975 Sum_probs=183.6
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
.|.+.+|..++|+-|+|||.|++.|+..+|....+.+.+.++....+.+.+.++++++|||+|++.|+.....+++.+.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
.+.|||++.+.+..++..|+...+....++..+++++||.|++..+.+..+++++|+.++++.++++|+++|.++.+.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999999888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccccC-CcccccCCCCCCCCCCCCCcccCCCc
Q 028303 162 KTAAKILQNIQEGALDAVNDS-GIKVGYGRGQGPSGARDGTVSQRGGC 208 (210)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c 208 (210)
...+.+.+.+.++..+.+-.. ++...-..-++.+- .+-..++|.+|
T Consensus 167 e~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l-~se~~~~kd~c 213 (215)
T KOG0097|consen 167 ETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSL-SSEATGAKDQC 213 (215)
T ss_pred HHHHHHHHhhhcCcccccchhccCcCCCCCCCcccc-ccCCCCccccC
Confidence 999999999999998888755 55443332222222 22334566778
No 39
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=2.2e-33 Score=202.93 Aligned_cols=160 Identities=43% Similarity=0.838 Sum_probs=147.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||+++|....+.+.+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888888888788888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
|++++.++..+..|+..+......+.|+++|+||.|+.+.+.+..+++..+++..+++|+++||+++.|++++|++|.++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999998877655579999999999998777788889999999889999999999999999999999865
No 40
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=4e-33 Score=202.28 Aligned_cols=162 Identities=43% Similarity=0.777 Sum_probs=147.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888887777777777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
|++++.+++.+..|+..+........|+++|+||+|+.+.+....+++.+++...+++++++||+++.|++++|++|.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999998877655678999999999998777777788888888888999999999999999999999886
Q ss_pred HH
Q 028303 167 IL 168 (210)
Q Consensus 167 ~~ 168 (210)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 54
No 41
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=3e-33 Score=202.16 Aligned_cols=161 Identities=40% Similarity=0.753 Sum_probs=153.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d 87 (210)
||+|+|++++|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+..+...+++.+|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 88 ITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
++++.|+..+..|+..+......+.|+++++||.|+.+.+.++.+++++++..++++|+++|++++.++.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999888776799999999999988888999999999999999999999999999999999999887
Q ss_pred H
Q 028303 168 L 168 (210)
Q Consensus 168 ~ 168 (210)
+
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 42
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.7e-33 Score=205.36 Aligned_cols=161 Identities=30% Similarity=0.529 Sum_probs=143.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
.+||+++|++|+|||||+++|.+..+...+.+|.+..+. ..+.+++..+.+.+|||+|++.+..+...+++.+|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 379999999999999999999999998888888776654 4577889999999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEecC
Q 028303 86 YDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEASAR 151 (210)
Q Consensus 86 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~ 151 (210)
||++++.|++++ ..|+..+.... .+.|+++|+||.|+.+ ...++.+++.++++..++ +|+++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 78998887764 5789999999999964 245788999999999997 79999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 028303 152 TAQN-VEEAFIKTAAKIL 168 (210)
Q Consensus 152 ~~~~-i~~~~~~l~~~~~ 168 (210)
+|++ ++++|..+++..+
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999988644
No 43
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=7.1e-33 Score=200.85 Aligned_cols=164 Identities=58% Similarity=0.951 Sum_probs=149.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
++.+||+++|+++||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 1 DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 35689999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
+|||++++.++..+..|+..+......+.|+++|+||.|+.+.+....++...++...+++++++||+++.|++++|+.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999998887765578999999999998777778888888988888999999999999999999999
Q ss_pred HHHH
Q 028303 164 AAKI 167 (210)
Q Consensus 164 ~~~~ 167 (210)
...+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 8765
No 44
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=5.3e-33 Score=201.67 Aligned_cols=162 Identities=33% Similarity=0.703 Sum_probs=148.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+|+|++|+|||||+++|.+..+.+.+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888999898888888888899999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-----CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHAN-----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
|++++.++..+..|+..+..... .+.|+++|+||+|+.+......++.+.++...+++++++||+++.|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999998876643 4689999999999976666778888888888889999999999999999999
Q ss_pred HHHHHHH
Q 028303 162 KTAAKIL 168 (210)
Q Consensus 162 ~l~~~~~ 168 (210)
+|.+.++
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998775
No 45
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=5.5e-33 Score=206.09 Aligned_cols=162 Identities=29% Similarity=0.578 Sum_probs=142.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
.+||+++|+.++|||||+.+|..+.+.+.+.+|.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 589999999999999999999999998888888876554 3467888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEecC
Q 028303 86 YDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEASAR 151 (210)
Q Consensus 86 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~ 151 (210)
||++++.+++++. .|...+.... .++|+++|+||.|+.+. ..+..++++.+++..+ .+++++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999997 5777666543 57999999999999653 2356778899999888 589999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 028303 152 TAQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 152 ~~~~i~~~~~~l~~~~~~ 169 (210)
++.|++++|+.|++.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988765
No 46
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-32 Score=199.70 Aligned_cols=163 Identities=48% Similarity=0.887 Sum_probs=147.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
++.+||+++|++|+|||||+++|..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 35799999999999999999999999888888888887777777888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~ 162 (210)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+....+++..++...+. .++++|+++|.|++++|+.
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999776666899999999999987777788888888888775 6899999999999999999
Q ss_pred HHHH
Q 028303 163 TAAK 166 (210)
Q Consensus 163 l~~~ 166 (210)
|.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 9865
No 47
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=5e-32 Score=204.05 Aligned_cols=167 Identities=51% Similarity=0.833 Sum_probs=144.0
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
....+||+|+|++|+|||||+++|.+..+. .+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 456799999999999999999999988764 5566777777777788888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHH-HHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303 83 LLVYDITRRETFNHLSS-WLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 160 (210)
++|||+++++++.++.. |...+.... ..+.|+++|+||.|+.....+..++...++...++.|+++||+++.|++++|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF 169 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999876 444444332 2468999999999998777777788888888889999999999999999999
Q ss_pred HHHHHHHHHH
Q 028303 161 IKTAAKILQN 170 (210)
Q Consensus 161 ~~l~~~~~~~ 170 (210)
++|.+.+...
T Consensus 170 ~~l~~~~~~~ 179 (211)
T PLN03118 170 EELALKIMEV 179 (211)
T ss_pred HHHHHHHHhh
Confidence 9999988654
No 48
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.1e-32 Score=202.76 Aligned_cols=162 Identities=27% Similarity=0.504 Sum_probs=142.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|+.|+|||||+++|..+.+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999998888888888998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC-----CCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-----RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
|++++.++.++..|+..+........| ++|+||+|+.. ......++++++++..+++++++||+++.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999988776544567 67899999852 111224567788888889999999999999999999
Q ss_pred HHHHHHHH
Q 028303 162 KTAAKILQ 169 (210)
Q Consensus 162 ~l~~~~~~ 169 (210)
++.+.+..
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99988864
No 49
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.9e-32 Score=197.77 Aligned_cols=160 Identities=61% Similarity=1.031 Sum_probs=147.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888888888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
|++++.++..+..|+..+......+.|+++++||.|+.....+..+++..++...++.++++|++++.|+.++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877766789999999999998777788888999999999999999999999999999998875
No 50
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=5.2e-32 Score=201.22 Aligned_cols=166 Identities=33% Similarity=0.599 Sum_probs=144.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
+||+|+|++|+|||||+++|.++.+.. .+.++.+..+....+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998875 5777878878777788999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC----CCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR----RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
||++++.+++++..|+..+... ..+.|+++|+||+|+.+. ..+..+++..++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999888664 347899999999998532 34455677888888889999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 028303 162 KTAAKILQNIQE 173 (210)
Q Consensus 162 ~l~~~~~~~~~~ 173 (210)
.|.+.+.+...+
T Consensus 160 ~i~~~~~~~~~~ 171 (193)
T cd04118 160 KVAEDFVSRANN 171 (193)
T ss_pred HHHHHHHHhccc
Confidence 999999765543
No 51
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.2e-32 Score=199.05 Aligned_cols=160 Identities=38% Similarity=0.631 Sum_probs=141.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||++++....+...+.++.+ ......+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988877777765 344555778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+...+..+++..++..++.+++++||+++.|+.++|++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999888876543 57899999999999776667777788888888899999999999999999999987
Q ss_pred HH
Q 028303 166 KI 167 (210)
Q Consensus 166 ~~ 167 (210)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 52
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.7e-32 Score=200.79 Aligned_cols=160 Identities=27% Similarity=0.549 Sum_probs=139.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
++||+++|++|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 479999999999999999999999998888888776664 3467788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEecC
Q 028303 86 YDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEASAR 151 (210)
Q Consensus 86 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~ 151 (210)
||++++.+++++. .|+..+.... .++|+++|+||+|+.+. +.+..++++++++..+ ..|+++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999997 4777776543 47899999999998543 4567788888998876 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028303 152 TAQNVEEAFIKTAAKI 167 (210)
Q Consensus 152 ~~~~i~~~~~~l~~~~ 167 (210)
+|.|++++|+.++..+
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 53
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.1e-32 Score=200.83 Aligned_cols=166 Identities=31% Similarity=0.559 Sum_probs=141.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
+||+|+|++|+|||||+++|.++.+...+.++.+.++... +... +..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999888888776665443 4454 6778999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC----CCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHH
Q 028303 86 YDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR----RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEA 159 (210)
Q Consensus 86 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~ 159 (210)
||++++.+++++. .|+..+... ..+.|+++|+||.|+... ..+..+++.+++...++ +++++||+++.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999986 477666543 357899999999998653 24667888899998888 8999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 028303 160 FIKTAAKILQNIQEG 174 (210)
Q Consensus 160 ~~~l~~~~~~~~~~~ 174 (210)
|+.+.+.+.......
T Consensus 159 f~~l~~~~~~~~~~~ 173 (187)
T cd04132 159 FDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999988766554
No 54
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=7.3e-32 Score=195.08 Aligned_cols=163 Identities=61% Similarity=0.983 Sum_probs=148.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
|++++.+++.+..|+..+......+.|+++|+||+|+........+.+..++...+++++++|++++.|++++|+.|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998877765689999999999997766777788888988889999999999999999999999988
Q ss_pred HHH
Q 028303 167 ILQ 169 (210)
Q Consensus 167 ~~~ 169 (210)
+..
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 55
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=4.7e-32 Score=196.39 Aligned_cols=160 Identities=39% Similarity=0.643 Sum_probs=141.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6999999999999999999998888777777766554 345778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...+..+++..+++..+++++++||+++.|++++|++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999988887653 367999999999999877777777788888888899999999999999999999987
Q ss_pred HH
Q 028303 166 KI 167 (210)
Q Consensus 166 ~~ 167 (210)
.+
T Consensus 161 ~l 162 (164)
T cd04175 161 QI 162 (164)
T ss_pred Hh
Confidence 65
No 56
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1e-31 Score=195.84 Aligned_cols=162 Identities=37% Similarity=0.660 Sum_probs=143.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d 87 (210)
||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+++|||||++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999999998888887878888989999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCC--CCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303 88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
+++++++..+..|+..+..... ...|+++|+||.|+.+... ...+++..++.+++.+++++||+++.|++++|+.|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999988765433 3578999999999865433 345667788888889999999999999999999998
Q ss_pred HHHHH
Q 028303 165 AKILQ 169 (210)
Q Consensus 165 ~~~~~ 169 (210)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88753
No 57
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=9.4e-32 Score=195.29 Aligned_cols=160 Identities=32% Similarity=0.598 Sum_probs=141.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|||||||++++....+...+.++.+.+.....+..++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999998888888888888887777777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
|++++.++.++..|+..+..... ++|+++|+||+|+.+. ... .+..+++....++++++||+++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999877654 7999999999999743 233 34456777778899999999999999999999988
Q ss_pred HHH
Q 028303 167 ILQ 169 (210)
Q Consensus 167 ~~~ 169 (210)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 764
No 58
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=9.2e-32 Score=194.31 Aligned_cols=159 Identities=36% Similarity=0.623 Sum_probs=143.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC--CEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--GRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
+||+++|++++|||||+++|.+..+.+.+.++.+.++....+.+. +..+.+.+|||||++.+..++..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999888888888888777767776 778899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
|||+++++++..+..|+..+.... .++|+++|+||.|+..+..+..+++..++...+++++++|++++.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999988876543 4799999999999987777788889999999999999999999999999999987
Q ss_pred HH
Q 028303 165 AK 166 (210)
Q Consensus 165 ~~ 166 (210)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 53
No 59
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=7e-32 Score=204.04 Aligned_cols=164 Identities=31% Similarity=0.542 Sum_probs=145.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 46799999999999999999999999998889999888888877878888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. .+..+++ .++...+++|+++||+++.|+.++|++|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999887654 57999999999999643 3344444 6777788999999999999999999999
Q ss_pred HHHHHHH
Q 028303 164 AAKILQN 170 (210)
Q Consensus 164 ~~~~~~~ 170 (210)
++.+.+.
T Consensus 168 ~~~~~~~ 174 (219)
T PLN03071 168 ARKLAGD 174 (219)
T ss_pred HHHHHcC
Confidence 9888644
No 60
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1.6e-31 Score=194.67 Aligned_cols=163 Identities=39% Similarity=0.688 Sum_probs=144.8
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
....+||+++|++|+|||||+++|.+..+.+.+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34679999999999999999999999999888888888887777788899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CeEEEEecCCCCCHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVE 157 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~ 157 (210)
++|||++++.++..+..|+..+..... .++|+++|+||.|+. .+.+..+++++++..++ .+++++||+++.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 999999999999999999887765432 468999999999986 45567788999988887 479999999999999
Q ss_pred HHHHHHHHH
Q 028303 158 EAFIKTAAK 166 (210)
Q Consensus 158 ~~~~~l~~~ 166 (210)
++|+.+++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999998865
No 61
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.4e-31 Score=193.18 Aligned_cols=160 Identities=41% Similarity=0.745 Sum_probs=146.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++++|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
|++++.++..+..|+..+......+.|+++++||+|+.+......++...++...+++++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998876655579999999999997666777788888888888999999999999999999999764
No 62
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.1e-31 Score=194.38 Aligned_cols=161 Identities=41% Similarity=0.649 Sum_probs=141.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+|+|++|+|||||+++|.+..+...+.++.+.. ......+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 489999999999999999999998887777765533 3455677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
|++++.++..+..|+..+..... .+.|+++|+||+|+.+......+++..++...+++++++||+++.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888766533 47899999999999876667777888888888899999999999999999999987
Q ss_pred HHH
Q 028303 166 KIL 168 (210)
Q Consensus 166 ~~~ 168 (210)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 664
No 63
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.8e-31 Score=193.06 Aligned_cols=161 Identities=36% Similarity=0.603 Sum_probs=141.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
.+||+++|++|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 58999999999999999999999888777777765443 34456788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303 86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
||++++.++..+..|+..+.... ..+.|+++++||+|+.....+..+++.+++...+++++++||+++.|++++|+.|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998887653 35789999999999987666777788888888889999999999999999999998
Q ss_pred HHH
Q 028303 165 AKI 167 (210)
Q Consensus 165 ~~~ 167 (210)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 64
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=2.8e-31 Score=191.94 Aligned_cols=162 Identities=48% Similarity=0.858 Sum_probs=147.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
.+||+++|++|+|||||+++|.+..+...+.++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998887788878878788888999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
+|+++++++..+..|+..+........|+++++||+|+........++...++...+++++++|+++|.|+.++|++|.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999988776577999999999999866667778888888888899999999999999999999988
Q ss_pred HH
Q 028303 166 KI 167 (210)
Q Consensus 166 ~~ 167 (210)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 65
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.9e-31 Score=194.37 Aligned_cols=162 Identities=43% Similarity=0.808 Sum_probs=145.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh-hhhHHhhccccEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-SITRSYYRGAAGALL 84 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~ 84 (210)
.+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999998888888888888888888889989999999999999886 578889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCC---CCCHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART---AQNVEEAF 160 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---~~~i~~~~ 160 (210)
|||++++.++..+..|+..+.... ..++|+++|+||+|+.+...+..+++.+++....++|+++||++ +.++.++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999998887654 35799999999999987777888888899998889999999999 89999999
Q ss_pred HHHHHHH
Q 028303 161 IKTAAKI 167 (210)
Q Consensus 161 ~~l~~~~ 167 (210)
..+.+.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9988765
No 66
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.2e-31 Score=193.95 Aligned_cols=160 Identities=34% Similarity=0.581 Sum_probs=140.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|.+|+|||||++++..+.+.+.+.++.+ ......+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999999999999988887777654 445566778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
|++++.++.++..|+..+..... .+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|.++.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999888876543 57999999999999766666777778888878889999999999999999999986
Q ss_pred HH
Q 028303 166 KI 167 (210)
Q Consensus 166 ~~ 167 (210)
.+
T Consensus 161 ~l 162 (163)
T cd04176 161 QM 162 (163)
T ss_pred hc
Confidence 54
No 67
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.7e-31 Score=193.76 Aligned_cols=159 Identities=33% Similarity=0.508 Sum_probs=138.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..+...+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998777777765444 444566778889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999887765432 578999999999997766677778888888888999999999999999999998
Q ss_pred HHH
Q 028303 164 AAK 166 (210)
Q Consensus 164 ~~~ 166 (210)
+..
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 753
No 68
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=1.5e-31 Score=195.58 Aligned_cols=158 Identities=32% Similarity=0.589 Sum_probs=137.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||+.++..+.+...+.++.... ....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceee-eEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 799999999999999999999999988888886543 3445678888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEecCC
Q 028303 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEASART 152 (210)
Q Consensus 87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~~ 152 (210)
|+++++++.++. .|+..+.... .+.|+++|+||.|+.+. ..++.+++..++.+++ ++++++||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999996 5777665543 57999999999999542 2467888999999888 4899999999
Q ss_pred CCCHHHHHHHHHHH
Q 028303 153 AQNVEEAFIKTAAK 166 (210)
Q Consensus 153 ~~~i~~~~~~l~~~ 166 (210)
|.|++++|+.+.+.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998764
No 69
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=2.8e-31 Score=191.47 Aligned_cols=159 Identities=38% Similarity=0.668 Sum_probs=138.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 7999999999999999999999988877777766544 445677888888999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
|+++..++.++..|+..+..... .+.|+++|+||+|+.+ .....+++..++...+++++++||+++.|++++|++|++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999888876543 5789999999999976 345567788888888899999999999999999999986
Q ss_pred HH
Q 028303 166 KI 167 (210)
Q Consensus 166 ~~ 167 (210)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 70
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-33 Score=193.76 Aligned_cols=181 Identities=39% Similarity=0.699 Sum_probs=162.9
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC---------CEEEEEEEEecCCcchhhhhh
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID---------GRPIKLQIWDTAGQESFRSIT 72 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~~ 72 (210)
+|++.+|.+.+|++|+||||++.++++++|......|.++++..+.+.++ +..+.+++|||+|++.|+++.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 36788999999999999999999999999999999999999988876652 356789999999999999999
Q ss_pred HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecC
Q 028303 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR 151 (210)
Q Consensus 73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 151 (210)
..+++.+=+++++||+++..||-+++.|+..+..+. ..+..+|+++||+|+++.+.++.+++..+++++++|||++||-
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 999999999999999999999999999999997664 3456688899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccccccC
Q 028303 152 TAQNVEEAFIKTAAKILQNIQEGALDAVNDS 182 (210)
Q Consensus 152 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 182 (210)
++.|+.+..+.|+.+++++++.--.....|-
T Consensus 165 tg~Nv~kave~LldlvM~Rie~~v~~s~~p~ 195 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMKRIEQCVEKSEIPL 195 (219)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence 9999999999999999999987654444433
No 71
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=3.8e-31 Score=191.19 Aligned_cols=160 Identities=32% Similarity=0.553 Sum_probs=139.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||+++|....+.+.+.++.+.+.......+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988887777777777777778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
|++++.++.++..|+..+.... .+.|+++|+||.|+... ..++...++...+++++++||+++.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998886543 46899999999998432 2344556677778899999999999999999999988
Q ss_pred HHHH
Q 028303 167 ILQN 170 (210)
Q Consensus 167 ~~~~ 170 (210)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 7764
No 72
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.6e-31 Score=197.98 Aligned_cols=162 Identities=34% Similarity=0.580 Sum_probs=138.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d 87 (210)
||+|+|++|+|||||+++|....+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 7999999999999999999999998888888766654 346678888999999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCC------------CCCHHHHHHHHHHcC-CeEEEEecCCC
Q 028303 88 ITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENG-LLFLEASARTA 153 (210)
Q Consensus 88 ~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa~~~ 153 (210)
++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. .+..+++..++...+ ++|+++||+++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 99999999986 5887776543 479999999999996543 345667778887776 68999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 028303 154 QNVEEAFIKTAAKILQNI 171 (210)
Q Consensus 154 ~~i~~~~~~l~~~~~~~~ 171 (210)
.|++++|++|.+.++...
T Consensus 160 ~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 160 RGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCHHHHHHHHHHHHhccc
Confidence 999999999998887433
No 73
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=9.1e-31 Score=188.80 Aligned_cols=161 Identities=40% Similarity=0.762 Sum_probs=144.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||+++|.+..+...+.++.+.......+.+.+..+.+.+||+||++.+..++..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887777777667776667777788889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
|+++++++..+..|+..+......+.|+++++||+|+.....+..+++.+++...+++++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999988877765679999999999998767777788888888889999999999999999999999876
Q ss_pred H
Q 028303 167 I 167 (210)
Q Consensus 167 ~ 167 (210)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 74
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=3.3e-31 Score=197.35 Aligned_cols=167 Identities=21% Similarity=0.261 Sum_probs=139.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh--------hhHHhhcc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYRG 78 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~ 78 (210)
+||+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||.+.+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888877666666677888889999999999654321 23345789
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhc---CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCeEEEEecCCCC
Q 028303 79 AAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQ 154 (210)
Q Consensus 79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~ 154 (210)
+|++|+|||++++++++.+..|+..+.... ..++|+++|+||+|+.+.+....+++..++. .++++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999988887654 3679999999999997766666677777654 468899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 028303 155 NVEEAFIKTAAKILQNIQE 173 (210)
Q Consensus 155 ~i~~~~~~l~~~~~~~~~~ 173 (210)
|++++|+.+++.++..-+.
T Consensus 161 ~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 161 HILLLFKELLISATTRGRS 179 (198)
T ss_pred CHHHHHHHHHHHhhccCCC
Confidence 9999999999888755444
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=1.1e-30 Score=189.19 Aligned_cols=160 Identities=31% Similarity=0.565 Sum_probs=140.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
+||+++|++|||||||+++|... .+...+.++.+.++....+.++ +..+.+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6777888888888777766665 56789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
+|||++++.++..+..|+..+.... .+.|+++|+||.|+.+...+...++..+....+++++++|++++.|+.++|+.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999998887654 468999999999997776677777777777778899999999999999999999
Q ss_pred HHHH
Q 028303 164 AAKI 167 (210)
Q Consensus 164 ~~~~ 167 (210)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8765
No 76
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=1.9e-30 Score=189.16 Aligned_cols=165 Identities=42% Similarity=0.740 Sum_probs=145.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888887777888988899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~ 161 (210)
|++++.++.++..|...+..... .++|+++|+||+|+........++...++...+ .+++++|++++.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999888888876654432 368999999999997656667788888888876 7899999999999999999
Q ss_pred HHHHHHHHHH
Q 028303 162 KTAAKILQNI 171 (210)
Q Consensus 162 ~l~~~~~~~~ 171 (210)
.|.+.+.+..
T Consensus 161 ~i~~~~~~~~ 170 (172)
T cd01862 161 TIARKALEQE 170 (172)
T ss_pred HHHHHHHhcc
Confidence 9999887763
No 77
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3e-30 Score=187.66 Aligned_cols=167 Identities=50% Similarity=0.873 Sum_probs=146.9
Q ss_pred CC-CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccc
Q 028303 1 MS-YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGA 79 (210)
Q Consensus 1 m~-~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 79 (210)
|. +.+.++|+++|++|+|||||++++....+.+.+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 55 35679999999999999999999998888777777777778777788888888999999999999999889999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 028303 80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159 (210)
Q Consensus 80 d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 159 (210)
|++++|||++++.++..+..|+..+......+.|+++|+||.|+.+...+..+..+.+......+++++|+++|.|++++
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 81 NALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHH
Confidence 99999999999999999999998887766667999999999999776666666677777777788999999999999999
Q ss_pred HHHHHHHH
Q 028303 160 FIKTAAKI 167 (210)
Q Consensus 160 ~~~l~~~~ 167 (210)
|+.|.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998764
No 78
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.3e-30 Score=193.89 Aligned_cols=156 Identities=30% Similarity=0.587 Sum_probs=139.4
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCCh
Q 028303 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 91 (210)
Q Consensus 12 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~ 91 (210)
+|.+|+|||||+++|....+...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999988888888988888888888899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 028303 92 ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170 (210)
Q Consensus 92 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 170 (210)
.++..+..|+..+.... .++|+++|+||+|+... .+..+. ..++...++.|+++||+++.|+.++|++|++.+...
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDR-KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999887754 47999999999998643 344443 467778889999999999999999999999988654
No 79
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=8.4e-31 Score=190.82 Aligned_cols=163 Identities=21% Similarity=0.298 Sum_probs=140.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
.+.+||+++|++|+|||||+++|.+..+. ..+.+|.+..+....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46899999999999999999999999998 78888888888777788888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFI 161 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~ 161 (210)
++|||++++.++..+..|+..+... .++|+++|+||.|+.+.......+..+++...++ .++++||+++.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 9999999999999988888765332 3689999999999965544444456677777776 468999999999999999
Q ss_pred HHHHHHH
Q 028303 162 KTAAKIL 168 (210)
Q Consensus 162 ~l~~~~~ 168 (210)
.|.+.+.
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9998765
No 80
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=3.6e-30 Score=185.83 Aligned_cols=159 Identities=51% Similarity=0.912 Sum_probs=141.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777888888877777778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
|++++.++..+..|+..+..... .+.|+++|+||.|+.. .....++...++...+++++++|+++|.|++++++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999888876643 6799999999999973 345667888898888999999999999999999999887
Q ss_pred H
Q 028303 166 K 166 (210)
Q Consensus 166 ~ 166 (210)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 81
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.98 E-value=2.4e-30 Score=198.41 Aligned_cols=160 Identities=26% Similarity=0.464 Sum_probs=139.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+|+|++|+|||||+++|.+..+...+.++.+ ++....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998887777765 455566788888999999999999999888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhh---------cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCeEEEEecCCCCCH
Q 028303 87 DITRRETFNHLSSWLEDARQH---------ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNV 156 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i 156 (210)
|++++++++++..|+..+... ...+.|+|+|+||+|+.+...+..+++.+++.. ..+.++++||+++.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888653 224789999999999976666778888887764 4678999999999999
Q ss_pred HHHHHHHHHHH
Q 028303 157 EEAFIKTAAKI 167 (210)
Q Consensus 157 ~~~~~~l~~~~ 167 (210)
+++|+.|...+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999998854
No 82
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.98 E-value=4.6e-30 Score=186.73 Aligned_cols=161 Identities=39% Similarity=0.636 Sum_probs=141.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 6899999999999999999999998777777766443 455678888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
|++++.+++.+..|+..+.... ..+.|+++++||.|+.+.+....+++..++..++ ++++++||+++.|++++|+++.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988886643 3579999999999998777777777888888877 8899999999999999999998
Q ss_pred HHHH
Q 028303 165 AKIL 168 (210)
Q Consensus 165 ~~~~ 168 (210)
..++
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 8765
No 83
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1.6e-30 Score=193.04 Aligned_cols=158 Identities=27% Similarity=0.452 Sum_probs=128.7
Q ss_pred eEEEEEEcCCCCCHHHHHH-HHHhCC-----CCCCCCCCcee-EEEEEE--------EEECCEEEEEEEEecCCcchhhh
Q 028303 6 LFKYIIIGDTGVGKSCLLL-QFTDKR-----FQPVHDLTIGV-EFGARM--------VTIDGRPIKLQIWDTAGQESFRS 70 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 70 (210)
.+||+++|+.|+|||||+. ++.+.. +...+.+|.+. +..... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 665443 34556677642 222211 25688899999999999975 3
Q ss_pred hhHHhhccccEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCC-------------------CCCCC
Q 028303 71 ITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH-------------------RRAVS 130 (210)
Q Consensus 71 ~~~~~~~~~d~~i~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~ 130 (210)
....+++.+|++|+|||++++.+++++. .|+..+.... .+.|+++|+||+|+.+ .+.++
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566889999999999999999999997 5888776654 4789999999999864 36778
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303 131 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
.+++++++++++++|+++||+++.|++++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999998764
No 84
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=2.5e-30 Score=187.58 Aligned_cols=160 Identities=39% Similarity=0.586 Sum_probs=136.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch-hhhhhHHhhccccEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~V~ 86 (210)
||+|+|++|+|||||++++....+...+.++....+ ...+.+++..+.+.+||+||++. +......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998888777777654333 44567888889999999999885 3445677889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCC-CCHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA-QNVEEAFIKT 163 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~-~~i~~~~~~l 163 (210)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...+..+++..++...+.+|+++|++++ .|++++|+.|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887654 357999999999999776777788888999888999999999999 5999999999
Q ss_pred HHHHH
Q 028303 164 AAKIL 168 (210)
Q Consensus 164 ~~~~~ 168 (210)
.+.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 87654
No 85
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=7.1e-30 Score=183.08 Aligned_cols=158 Identities=59% Similarity=0.983 Sum_probs=145.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++++|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888888888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
|+++++++..+..|+..+........|+++++||+|+........+++++++...+++++++|++++.|+.+++++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999988887656799999999999975566778889999998899999999999999999999876
No 86
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=3.4e-30 Score=188.32 Aligned_cols=158 Identities=33% Similarity=0.622 Sum_probs=136.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEEC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI 88 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~ 88 (210)
|+|+|++|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999999887777765444 34567788889999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 028303 89 TRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASARTAQ 154 (210)
Q Consensus 89 ~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 154 (210)
+++.+++++. .|+..+.... .+.|+++|+||+|+... ..++.+++..++...+. .++++||+++.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 5888776643 47999999999998642 23677788889998886 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q 028303 155 NVEEAFIKTAAKIL 168 (210)
Q Consensus 155 ~i~~~~~~l~~~~~ 168 (210)
|++++|+.+++.++
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 87
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=4.2e-30 Score=185.04 Aligned_cols=153 Identities=21% Similarity=0.381 Sum_probs=129.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||++++..+.+...+.++ ...+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 48999999999999999999998887765544 3333 35578888888999999999975 24567899999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCC--CCCCCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLA--HRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~ 162 (210)
|++++.+++++..|+..+..... .+.|+++|+||.|+. ..+.+..++++++++.. ++.|+++||+++.|++++|+.
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999877653 578999999999985 35667788888898876 589999999999999999999
Q ss_pred HHHH
Q 028303 163 TAAK 166 (210)
Q Consensus 163 l~~~ 166 (210)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8764
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=6e-30 Score=193.75 Aligned_cols=164 Identities=30% Similarity=0.402 Sum_probs=139.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhc-cccEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR-GAAGALL 84 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~ 84 (210)
+||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++....+.+||++|++ ......+++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988876 5666665556777778888888999999999998 334455666 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
|||++++.++..+..|+..+..... .+.|+|+|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988876542 579999999999998777777888888888888999999999999999999999
Q ss_pred HHHHHHHHh
Q 028303 164 AAKILQNIQ 172 (210)
Q Consensus 164 ~~~~~~~~~ 172 (210)
.+.+.....
T Consensus 159 ~~~~~~~~~ 167 (221)
T cd04148 159 VRQIRLRRD 167 (221)
T ss_pred HHHHHhhhc
Confidence 988864443
No 89
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=1.1e-29 Score=185.69 Aligned_cols=157 Identities=31% Similarity=0.581 Sum_probs=135.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||++++.+..+...+.++. .+.....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999998888887775 4444456778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEecCC
Q 028303 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEASART 152 (210)
Q Consensus 87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~ 152 (210)
|++++.+++++. .|+..+... ..+.|+++++||.|+.. .+.+..+++..++...+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999985 577777643 24689999999999853 345677889999998887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 028303 153 AQNVEEAFIKTAA 165 (210)
Q Consensus 153 ~~~i~~~~~~l~~ 165 (210)
+.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 90
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=9.9e-30 Score=185.84 Aligned_cols=159 Identities=29% Similarity=0.533 Sum_probs=136.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||+++|....+...+.++.... ....+.+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 589999999999999999999999887777775433 3445678888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEecCC
Q 028303 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASART 152 (210)
Q Consensus 87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 152 (210)
|++++.++..+. .|...+... ..+.|+++|+||+|+.+. ..++.+++..++...+. +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999886 576666554 567999999999998543 25667788888888885 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028303 153 AQNVEEAFIKTAAKI 167 (210)
Q Consensus 153 ~~~i~~~~~~l~~~~ 167 (210)
+.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998875
No 91
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=4.2e-29 Score=183.58 Aligned_cols=164 Identities=36% Similarity=0.540 Sum_probs=140.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
.||+|+|++|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..++..+|++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888766666654443 344667777888999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
|+++..+++.+..|+..+..... .+.|+++++||+|+........++...++...+.+++++|++++.|+.++|++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999998888766543 57899999999999766666666777788888889999999999999999999998
Q ss_pred HHHHHH
Q 028303 166 KILQNI 171 (210)
Q Consensus 166 ~~~~~~ 171 (210)
.+....
T Consensus 161 ~~~~~~ 166 (180)
T cd04137 161 EIEKVE 166 (180)
T ss_pred HHHHhc
Confidence 876443
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=4.5e-29 Score=180.37 Aligned_cols=161 Identities=40% Similarity=0.641 Sum_probs=140.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||+++|+...+...+.++..... .....+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999888777776655443 344667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
|++++.++..+..|+..+..... .+.|+++|+||+|+.........+...++..++++++++|++++.|+.++|+.|.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999888877643 57999999999999765556667778888888899999999999999999999987
Q ss_pred HHH
Q 028303 166 KIL 168 (210)
Q Consensus 166 ~~~ 168 (210)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
No 93
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=7.7e-32 Score=180.23 Aligned_cols=167 Identities=41% Similarity=0.801 Sum_probs=154.0
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEEC
Q 028303 10 IIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI 88 (210)
Q Consensus 10 ~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~ 88 (210)
+++|++++|||.|+-++.+..|.. ....|.++++..+.+..++.++++++|||+|++.|++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 378999999999999999888755 5667889999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 89 TRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
.+..||++.+.|+.++..+.+..+.+.+++||+|+..++.+..++.+.++..+++|++++||++|-|++..|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999888878889999999999988999999999999999999999999999999999999999888
Q ss_pred HHHhhccc
Q 028303 169 QNIQEGAL 176 (210)
Q Consensus 169 ~~~~~~~~ 176 (210)
+.-.....
T Consensus 161 k~~~~~~~ 168 (192)
T KOG0083|consen 161 KLKMGAPP 168 (192)
T ss_pred HhccCCCC
Confidence 76554433
No 94
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=3.2e-29 Score=180.32 Aligned_cols=158 Identities=40% Similarity=0.647 Sum_probs=140.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d 87 (210)
||+++|++|+|||||+++|++..+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999999887777777755 5555566777778899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303 88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
+++++++..+..|+..+..... ...|+++++||+|+........+++..++...+++++++|++++.|++++|++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999988877654 579999999999998767777888989998888999999999999999999999875
No 95
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1.6e-28 Score=179.59 Aligned_cols=159 Identities=31% Similarity=0.597 Sum_probs=132.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
.||+++|++|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999999988888777665554 34677888889999999999999988888899999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEecCC
Q 028303 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASART 152 (210)
Q Consensus 87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 152 (210)
|++++++++++. .|...+... ..+.|+++|+||.|+.+. ..+...++++++...+. +++++||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998886 466666543 347899999999998542 23445677778877664 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028303 153 AQNVEEAFIKTAAKI 167 (210)
Q Consensus 153 ~~~i~~~~~~l~~~~ 167 (210)
|.|++++|++|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 96
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.7e-28 Score=180.82 Aligned_cols=167 Identities=23% Similarity=0.334 Sum_probs=131.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
.+||+++|++|||||||++++....+... .++.+.+.....+.+ ++..+.+.+|||||++.+..++..+++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999998877644 455555554444443 3456889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH------cCCeEEEEecCCCCCHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------NGLLFLEASARTAQNVE 157 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~i~ 157 (210)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ....++...++.. ..++++++||+++.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 999999998888888877665442 25789999999999864 2334444444321 12468899999999999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 028303 158 EAFIKTAAKILQNIQEGA 175 (210)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~ 175 (210)
++|++|.+.+....+..+
T Consensus 160 ~l~~~l~~~l~~~~~~~~ 177 (183)
T cd04152 160 EGLEKLYEMILKRRKMLR 177 (183)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999977666543
No 97
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=3.6e-28 Score=181.29 Aligned_cols=160 Identities=26% Similarity=0.412 Sum_probs=134.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d 87 (210)
||+++|++|+|||||+++|....+...+.++.. ......+.+.+..+.+.+||+||+..+..++..+++.+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988777666654 3445567778888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCC-CCCCCHHHHHHHHH-HcCCeEEEEecCCCCCHHHHHHHHH
Q 028303 88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAH-RRAVSKEEGEQFAK-ENGLLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
++++.+++.+..|+..+..... .+.|+++|+||+|+.. ...+..++..+.+. ..+.+++++||+++.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888876654 5799999999999865 34455555554443 4467899999999999999999998
Q ss_pred HHHH
Q 028303 165 AKIL 168 (210)
Q Consensus 165 ~~~~ 168 (210)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8664
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=1.4e-28 Score=178.99 Aligned_cols=155 Identities=20% Similarity=0.344 Sum_probs=122.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...+||+++|++|+|||||+++|....+.. +.+|.+.+.. .+.. ..+.+.+|||||++.+..++..+++.+|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 356899999999999999999998776643 4556555443 2223 4578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVE 157 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~ 157 (210)
+|||++++.++.++..|+..+.... ..+.|+++|+||+|+.+ ....+++.+++.. ....++++||++|.|++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 9999999999988888776665432 25689999999999865 2455666665432 23468999999999999
Q ss_pred HHHHHHHH
Q 028303 158 EAFIKTAA 165 (210)
Q Consensus 158 ~~~~~l~~ 165 (210)
++|++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999864
No 99
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=1.5e-28 Score=180.69 Aligned_cols=160 Identities=18% Similarity=0.288 Sum_probs=123.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
+..+||+++|+++||||||+++|....+. .+.+|.+.+.. .+. ...+.+++||+||++.+..++..+++.+|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999977765 35566565442 233 34578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-----CeEEEEecCCCCCHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-----LLFLEASARTAQNVE 157 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~ 157 (210)
+|||+++++++..+..++..+... ...+.|+++++||.|+.+.. ..++....+.... ..++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999998888777666432 22478999999999986543 3344433332111 235689999999999
Q ss_pred HHHHHHHHHHHHH
Q 028303 158 EAFIKTAAKILQN 170 (210)
Q Consensus 158 ~~~~~l~~~~~~~ 170 (210)
++|++|.+.+.++
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999998887653
No 100
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=2.5e-28 Score=180.54 Aligned_cols=166 Identities=39% Similarity=0.585 Sum_probs=152.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..+||+++|.+|+|||+|+.+|....|...+.+|.. +.+...+.+++..+.+.|+||+|++++..+...++..+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 358999999999999999999999999999999977 6666778899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
||+++++.||+.+..++..+.+... ..+|+++|+||+|+...+.+..+++..++..++++|+++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999854433 568999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028303 164 AAKILQNI 171 (210)
Q Consensus 164 ~~~~~~~~ 171 (210)
++.+....
T Consensus 161 ~r~~~~~~ 168 (196)
T KOG0395|consen 161 VREIRLPR 168 (196)
T ss_pred HHHHHhhh
Confidence 99887733
No 101
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=5.9e-28 Score=175.80 Aligned_cols=157 Identities=34% Similarity=0.621 Sum_probs=130.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||+++|++..+...+.++... ........++..+.+.+||+||++.+.......++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFD-NYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 58999999999999999999999887666666543 33444677888899999999999998888888889999999999
Q ss_pred ECCChhhHHHHHH-HHHHHHhhcCCCCeEEEEEecCCCCCCC-----------CCCHHHHHHHHHHcCC-eEEEEecCCC
Q 028303 87 DITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRR-----------AVSKEEGEQFAKENGL-LFLEASARTA 153 (210)
Q Consensus 87 d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~sa~~~ 153 (210)
|++++.++..... |+..+.... .+.|+++|+||+|+.+.. .+..+++..++...+. +++++|++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999887664 555554433 479999999999986543 3356777888888877 8999999999
Q ss_pred CCHHHHHHHHHH
Q 028303 154 QNVEEAFIKTAA 165 (210)
Q Consensus 154 ~~i~~~~~~l~~ 165 (210)
.|+.++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 102
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=4e-29 Score=181.08 Aligned_cols=153 Identities=22% Similarity=0.359 Sum_probs=124.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d 87 (210)
.|+++|++|+|||||+++|.+..+...+.++.+... ..++...+.+.+||+||++.+..++..+++.+|++++|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999999888777777766542 3345557889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCH----HHHHHHHHHcCCeEEEEecCC------CCCHH
Q 028303 88 ITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK----EEGEQFAKENGLLFLEASART------AQNVE 157 (210)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~sa~~------~~~i~ 157 (210)
++++.++..+..|+..+.... .++|+++|+||.|+........ .++..++++.++.++++||++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999888888775443 5799999999999876443221 123445566678899999998 99999
Q ss_pred HHHHHHHH
Q 028303 158 EAFIKTAA 165 (210)
Q Consensus 158 ~~~~~l~~ 165 (210)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998763
No 103
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=4.8e-28 Score=177.25 Aligned_cols=156 Identities=20% Similarity=0.310 Sum_probs=121.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..+||+++|++|+|||||+++|..+.+. .+.+|.+.... .+.. ..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4699999999999999999999877664 35566665543 2333 35789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVEE 158 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~ 158 (210)
|||++++.+++....|+..+.... ..+.|+++|+||.|+.+.. ..+++.+.... ..+.++++||++|.|+++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 999999999999888887765432 2568999999999986532 33333332221 223477899999999999
Q ss_pred HHHHHHHHH
Q 028303 159 AFIKTAAKI 167 (210)
Q Consensus 159 ~~~~l~~~~ 167 (210)
+|++|.+.+
T Consensus 165 ~~~~l~~~~ 173 (175)
T smart00177 165 GLTWLSNNL 173 (175)
T ss_pred HHHHHHHHh
Confidence 999998764
No 104
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=2.4e-28 Score=177.84 Aligned_cols=155 Identities=22% Similarity=0.374 Sum_probs=124.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d 87 (210)
||+++|++++|||||+++|.+..+.. +.+|.+.... .+.. ..+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999886643 5566554443 2333 45789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC------CeEEEEecCCCCCHHHHH
Q 028303 88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG------LLFLEASARTAQNVEEAF 160 (210)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~ 160 (210)
++++.++.++..|+..+.... ..+.|+++|+||+|+.+ ....+++.+++.... +.++++||+++.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999999888876543 24589999999999864 355666766654222 357899999999999999
Q ss_pred HHHHHHHHH
Q 028303 161 IKTAAKILQ 169 (210)
Q Consensus 161 ~~l~~~~~~ 169 (210)
++|.+.+..
T Consensus 154 ~~l~~~~~~ 162 (169)
T cd04158 154 DWLSRQLVA 162 (169)
T ss_pred HHHHHHHhh
Confidence 999876543
No 105
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=9e-28 Score=177.62 Aligned_cols=165 Identities=31% Similarity=0.539 Sum_probs=136.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
.||+|+|++|+|||||+++|....+.+.+.++....+. ..+.+++..+.+.+||++|++.+.......++.+|++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 58999999999999999999988877766666544443 34567788888999999999988877777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCC----------CCCCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 028303 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH----------RRAVSKEEGEQFAKENGL-LFLEASARTAQ 154 (210)
Q Consensus 87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 154 (210)
|+++.+++..+. .|+..+.... .+.|+++|+||.|+.+ .+.+..+++..+++..+. +++++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999987 5877776554 4699999999999854 234556778888888885 79999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 028303 155 NVEEAFIKTAAKILQNIQE 173 (210)
Q Consensus 155 ~i~~~~~~l~~~~~~~~~~ 173 (210)
|++++|+.+.+.++...++
T Consensus 160 ~v~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 160 GVDDVFEAATRAALLVRKS 178 (187)
T ss_pred CHHHHHHHHHHHHhcccCc
Confidence 9999999999877655443
No 106
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.6e-27 Score=177.41 Aligned_cols=148 Identities=22% Similarity=0.423 Sum_probs=126.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC-----CEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-----GRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
+||+++|++++|||||+++|.+..+...+.+|.+.++....+.++ +..+.+.||||+|++.+..++..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888887777766663 467899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhc-------------------CCCCeEEEEEecCCCCCCCCCCHH----HHHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHA-------------------NPNMSIMLVGNKCDLAHRRAVSKE----EGEQFA 138 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~ 138 (210)
+|+|||++++.|++++..|+..+.... ..++|+++|+||.|+.+++.++.+ ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999886642 246899999999999765544443 244678
Q ss_pred HHcCCeEEEEecCCCC
Q 028303 139 KENGLLFLEASARTAQ 154 (210)
Q Consensus 139 ~~~~~~~~~~sa~~~~ 154 (210)
.+.+++.++.++.+..
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 8899999999988653
No 107
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=4.2e-27 Score=177.70 Aligned_cols=166 Identities=31% Similarity=0.549 Sum_probs=143.8
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (210)
|.....+||+++|++|||||||++++..+.+...+.++.+.++....+..+++.+.+.+||++|++.+..++..+++.++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 34456799999999999999999999988888888899898888888878889999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 160 (210)
++++|||+++..++..+..|+..+.... .+.|+++++||.|+.+.. ... +...++...++.++++|++++.|+++.|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDRQ-VKA-RQITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcccc-CCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998887654 468999999999986432 332 3345677778899999999999999999
Q ss_pred HHHHHHHHH
Q 028303 161 IKTAAKILQ 169 (210)
Q Consensus 161 ~~l~~~~~~ 169 (210)
.+|.+.+..
T Consensus 161 ~~ia~~l~~ 169 (215)
T PTZ00132 161 LWLARRLTN 169 (215)
T ss_pred HHHHHHHhh
Confidence 999988764
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=9.9e-28 Score=176.60 Aligned_cols=160 Identities=23% Similarity=0.342 Sum_probs=123.1
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..+||+++|++++|||||++++..+.+.. +.+|.+.+.. .+.. ..+.+++|||||++.+..++..+++.+|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999998777654 4556555443 2333 45789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVEE 158 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~ 158 (210)
|+|++++.++.....++..+... ...+.|+++|+||.|+.+. ...+++...... ..+.++++||++|.|+++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 99999999998888777666432 1246899999999998642 233333222211 123567999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028303 159 AFIKTAAKILQNI 171 (210)
Q Consensus 159 ~~~~l~~~~~~~~ 171 (210)
+|++|.+.+.+.+
T Consensus 169 ~~~~l~~~i~~~~ 181 (182)
T PTZ00133 169 GLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998877654
No 109
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=7.1e-28 Score=173.71 Aligned_cols=152 Identities=20% Similarity=0.330 Sum_probs=117.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|.+++|||||++++..+.+. .+.++.+.... .+.. ..+.+.+||+||++.+..++..+++.+|+++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877775 35666565442 2333 3578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 160 (210)
|++++.++..+..|+..+... .....|+++++||.|+.+.. ..++...... ...+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999988877766433 22468999999999996532 2333322221 123457899999999999999
Q ss_pred HHHHH
Q 028303 161 IKTAA 165 (210)
Q Consensus 161 ~~l~~ 165 (210)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=1.3e-27 Score=174.65 Aligned_cols=155 Identities=21% Similarity=0.316 Sum_probs=122.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
+..++|+++|++|+|||||+++|.+..+ ..+.++.+. ....+.++ .+.+.+||+||++.+...+..+++.+|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 3568999999999999999999998754 334455443 33334444 467899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 157 (210)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ..+++..++. ...++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 999999999998888887776543 23579999999999986532 4555655553 235689999999999999
Q ss_pred HHHHHHHH
Q 028303 158 EAFIKTAA 165 (210)
Q Consensus 158 ~~~~~l~~ 165 (210)
++|++|++
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99999864
No 111
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.96 E-value=9.7e-30 Score=178.30 Aligned_cols=170 Identities=31% Similarity=0.533 Sum_probs=160.6
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
++..+|++++|..++||||++++++.+.|...+..+++.++....+.+.+..+++.+||++|+++++.+..+|++.+.+-
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 56789999999999999999999999999999999999999998888888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
++||+-++..||+.+..|++.+....+ .+|.++|-||+|+.++..+...+++.+++.....++.+|++...|+-.+|.+
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~Y 175 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAY 175 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence 999999999999999999999977654 6999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 028303 163 TAAKILQNIQE 173 (210)
Q Consensus 163 l~~~~~~~~~~ 173 (210)
|++.+.++..+
T Consensus 176 LaeK~~q~~kq 186 (246)
T KOG4252|consen 176 LAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHH
Confidence 99999887765
No 112
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=2.8e-27 Score=171.79 Aligned_cols=160 Identities=28% Similarity=0.391 Sum_probs=123.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+++|++|+|||||+++|.++.+...+..+. ... .....+.+..+.+.+|||||.+.+...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999998866544332 222 233445667789999999999888777777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC--HHHHHHHHHHcC--CeEEEEecCCCCCHHHHHH
Q 028303 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKENG--LLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~ 161 (210)
|++++.++..+. .|+..+.... .+.|+++|+||+|+.+..... .++...++.... .+++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999986 5666666543 479999999999997644321 223333333332 3799999999999999999
Q ss_pred HHHHHHHH
Q 028303 162 KTAAKILQ 169 (210)
Q Consensus 162 ~l~~~~~~ 169 (210)
.+.+.+++
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 98887653
No 113
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=5.4e-28 Score=175.34 Aligned_cols=166 Identities=35% Similarity=0.619 Sum_probs=147.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
..+|++|+|+.++|||+|+-.+..+.|+..+.+|.. +.+...+.++ ++.+.+.+|||+|+++|+.+++..++++|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 468999999999999999999999999999999988 5555557885 99999999999999999999989999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEe
Q 028303 84 LVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEAS 149 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s 149 (210)
++|++.++.|++++. .|+.++..+. ++.|+|+|++|.|+.++ ..+..++++.++++.+ +.|+++|
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 999999999999976 6888777665 78999999999999742 3677888999999998 5699999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Q 028303 150 ARTAQNVEEAFIKTAAKILQNIQ 172 (210)
Q Consensus 150 a~~~~~i~~~~~~l~~~~~~~~~ 172 (210)
|++..|++++|+..+..++...+
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcccc
Confidence 99999999999998888776543
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=6.2e-27 Score=168.96 Aligned_cols=152 Identities=19% Similarity=0.307 Sum_probs=116.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+|+++|++|+|||||+++|.+..+ ...+.++.+.... .+. ...+.+.+|||||++.+..++..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 4455666554332 222 34578899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc---CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEE 158 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~ 158 (210)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++...... ....+++++||+++.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999888888877765432 2479999999999986532 2233322221 1234589999999999999
Q ss_pred HHHHHHH
Q 028303 159 AFIKTAA 165 (210)
Q Consensus 159 ~~~~l~~ 165 (210)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=1.1e-26 Score=169.93 Aligned_cols=154 Identities=26% Similarity=0.344 Sum_probs=119.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+++|++|+|||||+++|....+.. +.++.+.+.. .+.++ .+.+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999887754 4555554432 23343 4679999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVEE 158 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~ 158 (210)
|+|+++++++.....++..+.... ..+.|+++++||+|+.+. ...++..+.. ....++++++||+++.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 999999988888877776664432 246899999999998652 2334433222 22345789999999999999
Q ss_pred HHHHHHH
Q 028303 159 AFIKTAA 165 (210)
Q Consensus 159 ~~~~l~~ 165 (210)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999864
No 116
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=7.4e-26 Score=165.40 Aligned_cols=141 Identities=42% Similarity=0.692 Sum_probs=127.2
Q ss_pred CCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhc
Q 028303 29 KRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA 108 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~ 108 (210)
+.|.+.+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++.++..+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35677888999999988888899999999999999999999999999999999999999999999999999999887665
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 028303 109 NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 109 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 169 (210)
....|+++|+||+|+.+.+.+..+++..++..++..++++||+++.|++++|++|.+.+..
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999998766778888989998888899999999999999999999887644
No 117
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=1.7e-26 Score=167.62 Aligned_cols=152 Identities=28% Similarity=0.403 Sum_probs=117.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC------CCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRF------QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
+|+|+|++|+|||||+++|.+... ...+.++.+.... .+.++ ...+.+|||||++.+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999986432 1223334343332 33444 4678999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-------cCCeEEEEecCCC
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-------NGLLFLEASARTA 153 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~~ 153 (210)
+++|+|++++.++.....|+..+.... ..+.|+++++||+|+.+. ...+++..+... .+++++++||+++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999988888888877765532 257999999999998653 344555554433 2457999999999
Q ss_pred CCHHHHHHHHHH
Q 028303 154 QNVEEAFIKTAA 165 (210)
Q Consensus 154 ~~i~~~~~~l~~ 165 (210)
.|+++++++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 118
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=2.2e-26 Score=170.52 Aligned_cols=156 Identities=26% Similarity=0.341 Sum_probs=124.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+++|++|||||||+++|.+..+. .+.++.+... ..+.+++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999988764 3444544332 3344554 57889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHH----------------cCCeEE
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE----------------NGLLFL 146 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~ 146 (210)
+|+|+++..++.....|+..+..... .+.|+++++||+|+.+ .+..++++..+.. ...+++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 99999999888888888877765433 5699999999999864 4556666666542 224689
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q 028303 147 EASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 147 ~~sa~~~~~i~~~~~~l~~~ 166 (210)
++||+++.|++++|++|.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999865
No 119
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=4.7e-27 Score=170.76 Aligned_cols=151 Identities=21% Similarity=0.288 Sum_probs=118.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d 87 (210)
+|+++|++|||||||+++|.+. +...+.++.+... ..+... .+.+.+||+||++.+..++..+++.+|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999977 5566667766543 233443 5778999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHH------HHHHHc--CCeEEEEecCCC-----
Q 028303 88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGE------QFAKEN--GLLFLEASARTA----- 153 (210)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~------~~~~~~--~~~~~~~sa~~~----- 153 (210)
++++.++..+..|+..+..... .+.|+++|+||.|+.+... ..+.. .++.+. .+.++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999999999888765432 5789999999999976432 22222 222222 245788999998
Q ss_pred -CCHHHHHHHHHH
Q 028303 154 -QNVEEAFIKTAA 165 (210)
Q Consensus 154 -~~i~~~~~~l~~ 165 (210)
.|+.+.|+||..
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999864
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=1.9e-26 Score=166.23 Aligned_cols=152 Identities=24% Similarity=0.417 Sum_probs=117.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d 87 (210)
+|+++|++|+|||||+++|.+..+... .++.+.+. ..+... ..+.+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887543 44544333 223333 35789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHH------HHcCCeEEEEecCCCCCHHHHH
Q 028303 88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFA------KENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~sa~~~~~i~~~~ 160 (210)
++++.++.....|+..+..... .+.|+++|+||+|+... ...+++.... ...+++++++||+++.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 9999988888888777654322 57999999999998642 2233333222 1123568999999999999999
Q ss_pred HHHHH
Q 028303 161 IKTAA 165 (210)
Q Consensus 161 ~~l~~ 165 (210)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 121
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=3e-26 Score=167.61 Aligned_cols=158 Identities=28% Similarity=0.451 Sum_probs=125.5
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
.+..++|+++|+.||||||+++++....... ..||.+.+ ...+.+.+ +.+.+||.+|+..+...|..+++.+|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 4678999999999999999999999765432 34444433 33444544 6789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHH------cCCeEEEEecCCCCC
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------NGLLFLEASARTAQN 155 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~ 155 (210)
|||+|+++.+.+......+..+..... .+.|+++++||.|+.+ ....+++...... ..+.++.+|+.+|+|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 999999999888888877777655432 5799999999999865 4456666654432 234588999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 156 VEEAFIKTAAKI 167 (210)
Q Consensus 156 i~~~~~~l~~~~ 167 (210)
+.+.|+||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999998864
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=2.6e-26 Score=165.23 Aligned_cols=151 Identities=22% Similarity=0.324 Sum_probs=119.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d 87 (210)
||+++|++|||||||++++.+... ..+.++.+.+. ..+.+. .+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998873 33444444433 233343 4679999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHHH
Q 028303 88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~~ 161 (210)
++++.++.....|+..+.... ..+.|+++++||+|+.+.. ..++..+.+.. ..++++++|+++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888887775543 3578999999999986533 33444443332 346799999999999999999
Q ss_pred HHHH
Q 028303 162 KTAA 165 (210)
Q Consensus 162 ~l~~ 165 (210)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=5.5e-26 Score=163.59 Aligned_cols=151 Identities=23% Similarity=0.326 Sum_probs=113.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d 87 (210)
||+++|++++|||||+++|....+.. +.++.+.+.. .+.. ....+++|||||++.+...+..+++.+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776643 3444444332 2333 35689999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHh-hcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHH
Q 028303 88 ITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
++++.++.....++..+.. ....+.|+++|+||+|+.+.. ...++..... ..+.+++++||+++.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9998887776666554433 222478999999999986432 2233322221 1234699999999999999999
Q ss_pred HHHH
Q 028303 162 KTAA 165 (210)
Q Consensus 162 ~l~~ 165 (210)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
No 124
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=1e-25 Score=175.71 Aligned_cols=139 Identities=24% Similarity=0.508 Sum_probs=121.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC-------------EEEEEEEEecCCcchhhhh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-------------RPIKLQIWDTAGQESFRSI 71 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~~~~~ 71 (210)
..+||+|+|+.|+|||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.||||+|++.+..+
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL 99 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC 99 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence 468999999999999999999999999888889998888777676642 4688999999999999999
Q ss_pred hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcC------------CCCeEEEEEecCCCCCCC---C---CCHHH
Q 028303 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN------------PNMSIMLVGNKCDLAHRR---A---VSKEE 133 (210)
Q Consensus 72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~D~~~~~---~---~~~~~ 133 (210)
+..+++.+|++|+|||+++..++.++..|+..+..... .++|+++|+||+|+.+.. . +..++
T Consensus 100 ~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~ 179 (334)
T PLN00023 100 RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDA 179 (334)
T ss_pred hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHH
Confidence 99999999999999999999999999999999976531 258999999999996542 2 35788
Q ss_pred HHHHHHHcCC
Q 028303 134 GEQFAKENGL 143 (210)
Q Consensus 134 ~~~~~~~~~~ 143 (210)
+++++.+.++
T Consensus 180 a~~~A~~~g~ 189 (334)
T PLN00023 180 ARQWVEKQGL 189 (334)
T ss_pred HHHHHHHcCC
Confidence 9999998764
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=1.6e-25 Score=165.11 Aligned_cols=156 Identities=21% Similarity=0.262 Sum_probs=121.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+++|++|+|||||+++|.+..+.. +.++.+.+. ..+.+. .+.+.+||+||++.+...+..+++.+|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 567999999999999999999999886643 233433322 223343 467899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH------------cCCeEEEEec
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------------NGLLFLEASA 150 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa 150 (210)
+|+|++++.++.....++..+.... ..+.|+++|+||.|+.. ..+.+++.+.+.. ....++++||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 9999999998888887777665432 25789999999999864 3455665554321 1234899999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028303 151 RTAQNVEEAFIKTAAK 166 (210)
Q Consensus 151 ~~~~~i~~~~~~l~~~ 166 (210)
+++.|+++++++|...
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999764
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=4.6e-25 Score=158.11 Aligned_cols=151 Identities=22% Similarity=0.335 Sum_probs=119.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEEC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI 88 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~ 88 (210)
|+++|++|+|||||+++|.+..+...+.++.+..... +... .+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999999999888888777665543 2333 37899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHHHHH
Q 028303 89 TRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 89 ~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
++..++.....|+..+.... ..+.|+++|+||.|+.+... .++..... ....++++++|++++.|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 99988888777776664432 25789999999999865322 22222222 122367899999999999999999
Q ss_pred HHH
Q 028303 163 TAA 165 (210)
Q Consensus 163 l~~ 165 (210)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 875
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=1e-24 Score=160.06 Aligned_cols=154 Identities=25% Similarity=0.293 Sum_probs=112.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCC------CceeEEEEEEEE--E---CCEEEEEEEEecCCcchhh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDL------TIGVEFGARMVT--I---DGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~--~---~~~~~~~~i~D~~G~~~~~ 69 (210)
+|+++|++++|||||+++|++.. +...+.+ +.+.+....... + ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 1111212 112333333222 2 5667889999999999999
Q ss_pred hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC---eEE
Q 028303 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL---LFL 146 (210)
Q Consensus 70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 146 (210)
..+..+++.+|++|+|+|++++.+......|.... ..++|+++|+||+|+.+.. ..+...+++...++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999876666655554322 1368999999999986422 12223445555555 389
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 028303 147 EASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 147 ~~sa~~~~~i~~~~~~l~~~~ 167 (210)
++||++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998764
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=1.5e-24 Score=157.49 Aligned_cols=156 Identities=22% Similarity=0.184 Sum_probs=107.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh---------hhhHHhhc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR---------SITRSYYR 77 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~ 77 (210)
.+|+++|++|+|||||+++|.+..+.....+..+........ ....+.+.+|||||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999999987643322222222222222 2235689999999974211 11111223
Q ss_pred cccEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303 78 GAAGALLVYDITRRET--FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (210)
Q Consensus 78 ~~d~~i~V~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 155 (210)
.+|++++|+|+++..+ +.....|+..+.... .+.|+++|+||+|+.+..... +..++......+++++||+++.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence 4689999999998654 355556777765443 368999999999996543322 24455555667899999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 156 VEEAFIKTAAKI 167 (210)
Q Consensus 156 i~~~~~~l~~~~ 167 (210)
++++|++|.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 129
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=6.5e-24 Score=151.72 Aligned_cols=158 Identities=33% Similarity=0.493 Sum_probs=126.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
.+||+++|++|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+.+.++.++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999987667777777777777677777668899999999999999999999999999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 86 YDITRR-ETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 86 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
+|.... .++.... .|...+......+.|+++++||.|+.... ........+......+++++||+++.|+.+++++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999876 5555544 56655555444478999999999996543 22233333334445679999999999999999986
Q ss_pred H
Q 028303 164 A 164 (210)
Q Consensus 164 ~ 164 (210)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 4
No 130
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=1.1e-24 Score=163.20 Aligned_cols=157 Identities=19% Similarity=0.174 Sum_probs=113.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch---------hhhhhHH
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---------FRSITRS 74 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~ 74 (210)
++.++|+|+|++|||||||++++++........+..+.+.....+.+++. ..+.+|||||... +... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence 45689999999999999999999998654333333333333334444443 3688999999732 1111 12
Q ss_pred hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 028303 75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ 154 (210)
Q Consensus 75 ~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 154 (210)
.+..+|++++|+|++++.+......|...+......+.|+++|+||+|+.+.... ...+.....+++++||+++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence 3568999999999999888877777777666554456899999999998653321 13444556789999999999
Q ss_pred CHHHHHHHHHHHH
Q 028303 155 NVEEAFIKTAAKI 167 (210)
Q Consensus 155 ~i~~~~~~l~~~~ 167 (210)
|+++++++|.+++
T Consensus 192 gi~~l~~~L~~~~ 204 (204)
T cd01878 192 GLDELLEAIEELL 204 (204)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999987753
No 131
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.93 E-value=5.4e-24 Score=147.34 Aligned_cols=161 Identities=22% Similarity=0.362 Sum_probs=127.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
+..++|+++|..||||||++++|.+... ....|+.+ +..+++.++ .+++++||.+|+...+..|.+|+..+|++|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g--f~Iktl~~~--~~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG--FQIKTLEYK--GYTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc--eeeEEEEec--ceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 5689999999999999999999998762 33334433 444444444 578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHH------HHHHHHcCCeEEEEecCCCCCH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEG------EQFAKENGLLFLEASARTAQNV 156 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~------~~~~~~~~~~~~~~sa~~~~~i 156 (210)
+|+|.+++..++.....+..+.... -.+.|++++.||.|+.. ..+.+++ ..+++...++++.||+.+|+++
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 9999999988888776665554322 25789999999999963 2333333 3344566788999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028303 157 EEAFIKTAAKILQNI 171 (210)
Q Consensus 157 ~~~~~~l~~~~~~~~ 171 (210)
.+.++||+..+.+++
T Consensus 167 ~~gidWL~~~l~~r~ 181 (185)
T KOG0073|consen 167 LEGIDWLCDDLMSRL 181 (185)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988754
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=2.1e-24 Score=156.95 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=110.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc----hhhhhhHHh---hcccc
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----SFRSITRSY---YRGAA 80 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~---~~~~d 80 (210)
+|+++|.+|+|||||+++|.+........+..+.......+.+++ ...+.+|||||.. ....+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 589999999999999999997654221112112222222233333 2478899999963 211222333 44699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCeEEEEecCCCCCH
Q 028303 81 GALLVYDITRR-ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNV 156 (210)
Q Consensus 81 ~~i~V~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i 156 (210)
++++|+|++++ .++..+..|...+..... .+.|+++|+||+|+...... .+....+... ...+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788888888888766532 36899999999998654433 3344455555 3678999999999999
Q ss_pred HHHHHHHHHH
Q 028303 157 EEAFIKTAAK 166 (210)
Q Consensus 157 ~~~~~~l~~~ 166 (210)
+++|++|.++
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998865
No 133
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=2.8e-24 Score=155.19 Aligned_cols=152 Identities=20% Similarity=0.170 Sum_probs=105.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
+.|+++|++++|||||+++|++.. +.....++.+.+.....+.+.. ...+.+|||||++.+......+++.+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999999643 2222233334444444444442 357899999999988877777889999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHH---cCCeEEEEecCCCCC
Q 028303 84 LVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKE---NGLLFLEASARTAQN 155 (210)
Q Consensus 84 ~V~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~sa~~~~~ 155 (210)
+|+|+++ ..+...+ ..+.... ..|+++++||+|+.+... ...++..+.+.. .+.+++++|++++.|
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~~~~~--~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EILELLG--IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHH----HHHHHhC--CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 3332222 2222221 249999999999865321 112344444444 357899999999999
Q ss_pred HHHHHHHHHH
Q 028303 156 VEEAFIKTAA 165 (210)
Q Consensus 156 i~~~~~~l~~ 165 (210)
++++++.+.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 134
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=1.2e-23 Score=167.38 Aligned_cols=163 Identities=15% Similarity=0.080 Sum_probs=119.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch----hhhh---hHHhhcc
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSI---TRSYYRG 78 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~ 78 (210)
...|+|+|.|+||||||+++|++........+.++.......+.+.. ...+.+||+||.-+ ...+ +...+..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 35689999999999999999998653322223334444444444432 24588999999632 1122 3334567
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303 79 AAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (210)
Q Consensus 79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 156 (210)
++++++|+|+++.++++.+..|...+..+.. .+.|+++|+||+|+.+......+....++...+.+++++||+++.|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999988788888899888876543 46899999999999754433334455555556688999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028303 157 EEAFIKTAAKILQ 169 (210)
Q Consensus 157 ~~~~~~l~~~~~~ 169 (210)
++++++|.+.+..
T Consensus 317 ~eL~~~L~~~l~~ 329 (335)
T PRK12299 317 DELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=1.7e-23 Score=152.63 Aligned_cols=154 Identities=22% Similarity=0.342 Sum_probs=114.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+++|++|+|||||++++.+..+.. ..++.+.+. ..+..++ ..+.+||+||+..+...+..+++.+|++++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999876533 344444332 2334444 568899999999888888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-----CeEEEEecCCCCCHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-----LLFLEASARTAQNVEE 158 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~ 158 (210)
|+|+++..++.....++..+... ...++|+++++||+|+.+.. ..+++.+...... .+++++||++++|+++
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHH
Confidence 99999988888777776655433 22478999999999985432 2233322221111 2478999999999999
Q ss_pred HHHHHHH
Q 028303 159 AFIKTAA 165 (210)
Q Consensus 159 ~~~~l~~ 165 (210)
+|++|.+
T Consensus 166 ~~~~l~~ 172 (173)
T cd04155 166 GMNWVCK 172 (173)
T ss_pred HHHHHhc
Confidence 9999875
No 136
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=6.8e-23 Score=155.07 Aligned_cols=169 Identities=40% Similarity=0.561 Sum_probs=136.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
.+||+++|++|+|||||+++|.+..+...+.++.+..+...........+.+.+|||+|++.+..++..++..++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999999999888777777776666688899999999999999999999999999999
Q ss_pred EECCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC------------CCHHHHHHHHHHc---CCeEEEEe
Q 028303 86 YDITRR-ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA------------VSKEEGEQFAKEN---GLLFLEAS 149 (210)
Q Consensus 86 ~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~---~~~~~~~s 149 (210)
+|.++. .+.+....|...+......+.|+++++||+|+..... ............. ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 999994 4555566788787776655799999999999976532 2222222222222 23389999
Q ss_pred cC--CCCCHHHHHHHHHHHHHHHHhhc
Q 028303 150 AR--TAQNVEEAFIKTAAKILQNIQEG 174 (210)
Q Consensus 150 a~--~~~~i~~~~~~l~~~~~~~~~~~ 174 (210)
++ ++.++.++|..+...+.......
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEKL 191 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence 99 99999999999999887665443
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=7e-24 Score=149.95 Aligned_cols=134 Identities=21% Similarity=0.208 Sum_probs=98.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc-----hhhhhhHHhhccccEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-----SFRSITRSYYRGAAGA 82 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~ 82 (210)
||+++|++|+|||||+++|.+..+. +.++.+.+ +.. .+|||||.. .+..+. ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 7999999999999999999987652 22332221 211 589999972 233333 357899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFI 161 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~ 161 (210)
++|||++++.++.. ..|...+ ..|+++|+||+|+.+. ....+++.+++...+. +++++||+++.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999888654 2333221 2499999999998653 3455667777777765 799999999999999999
Q ss_pred HHH
Q 028303 162 KTA 164 (210)
Q Consensus 162 ~l~ 164 (210)
+|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=2.4e-23 Score=151.06 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=110.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
.|+|+|++|+|||||+++|....+......+.+.+.....+... +....+.+|||||++.+...+...++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999888766544444444443434333 13567899999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCH-HHHHHHHH------HcCCeEEEEecCCCCCHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK-EEGEQFAK------ENGLLFLEASARTAQNVEEA 159 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~sa~~~~~i~~~ 159 (210)
|+++....... ..+..+.. .+.|+++|+||+|+........ +....+.. ....+++++|++++.|+.++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 99885322221 12222222 3689999999999864321111 11111111 12357999999999999999
Q ss_pred HHHHHHHHH
Q 028303 160 FIKTAAKIL 168 (210)
Q Consensus 160 ~~~l~~~~~ 168 (210)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999987653
No 139
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=8e-24 Score=157.37 Aligned_cols=162 Identities=20% Similarity=0.199 Sum_probs=113.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh--CCCCCCC------------CCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD--KRFQPVH------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSIT 72 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 72 (210)
-+|+++|.+++|||||+++|+. ..+...+ ..+.+.+.......++...+.+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999997 4443332 1223444554545555567789999999999999999
Q ss_pred HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-CCHHHHHHHHHH-------cCCe
Q 028303 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAKE-------NGLL 144 (210)
Q Consensus 73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~~ 144 (210)
..+++.+|++++|+|+++.. ......++..+.. .++|+++|+||+|+.+... ...+++.+++.. .+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2223333333322 3789999999999964332 123445555432 3678
Q ss_pred EEEEecCCCCCHHHH------HHHHHHHHHHHHh
Q 028303 145 FLEASARTAQNVEEA------FIKTAAKILQNIQ 172 (210)
Q Consensus 145 ~~~~sa~~~~~i~~~------~~~l~~~~~~~~~ 172 (210)
++++||++|.|+.+. +++|++++....|
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence 999999999887544 4455555555444
No 140
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=8.8e-23 Score=144.56 Aligned_cols=153 Identities=49% Similarity=0.828 Sum_probs=121.9
Q ss_pred EEcCCCCCHHHHHHHHHhCCC-CCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECC
Q 028303 11 IIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89 (210)
Q Consensus 11 v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~ 89 (210)
|+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 44555554 6666666777777889999999999988888888999999999999999
Q ss_pred ChhhHHHHHHHH-HHHHhhcCCCCeEEEEEecCCCCCCCCCCHHH-HHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303 90 RRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDLAHRRAVSKEE-GEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 90 ~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
++.+......|+ .........+.|+++++||+|+.......... ..........+++++|+.++.++.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999888888773 22233344689999999999986544333222 3445555678899999999999999999875
No 141
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=5.6e-23 Score=147.56 Aligned_cols=148 Identities=20% Similarity=0.221 Sum_probs=109.8
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh------hhHHhhc--cccEE
Q 028303 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS------ITRSYYR--GAAGA 82 (210)
Q Consensus 11 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~d~~ 82 (210)
|+|++|+|||||++++.+..+.....++.+.+.....+.+++ ..+.+|||||+..+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998865544445545555555566665 4688999999876554 3455554 89999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
++|+|+.++... ..++..+.. .+.|+++|+||+|+.+...+.. +...+....+.+++++|+.++.|++++++.
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 999999886542 233333332 3689999999999976543332 345666677889999999999999999999
Q ss_pred HHHHH
Q 028303 163 TAAKI 167 (210)
Q Consensus 163 l~~~~ 167 (210)
|.+.+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 88763
No 142
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.6e-23 Score=148.38 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=105.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc------hhhhhhHHhh--cc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE------SFRSITRSYY--RG 78 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~~~~~~~~~--~~ 78 (210)
++|+++|.|++|||||+|+|++........+..+.+.....+.+.+ ..+.++|+||-- ........++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999986554455556777766677776 457899999931 1223334443 68
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303 79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158 (210)
Q Consensus 79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 158 (210)
.|++++|+|+++.+.-- .....+.. .++|+++++||+|...+..... ....+.+..+++++++||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l---~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL---YLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHH---HHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHH---HHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 99999999998754322 22333333 3799999999999865544433 35667777899999999999999999
Q ss_pred HHHHH
Q 028303 159 AFIKT 163 (210)
Q Consensus 159 ~~~~l 163 (210)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98865
No 143
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.91 E-value=6.4e-24 Score=145.74 Aligned_cols=164 Identities=27% Similarity=0.489 Sum_probs=145.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
.+||.++|++..|||||+-++.++.+.+.+..+.+..+..+++.+.+..+.+.+||.+|++++....+...+.+-+++|+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC-----CHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-----SKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 160 (210)
||++.+.++..+..|+.+.+...+..+|+ +|++|.|..-.-.. ...+++.+++-.+++++++|+..+.|+.++|
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF 178 (205)
T ss_pred EecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence 99999999999999999998887766665 78999997322111 1245778888899999999999999999999
Q ss_pred HHHHHHHHHH
Q 028303 161 IKTAAKILQN 170 (210)
Q Consensus 161 ~~l~~~~~~~ 170 (210)
..+..++...
T Consensus 179 K~vlAklFnL 188 (205)
T KOG1673|consen 179 KIVLAKLFNL 188 (205)
T ss_pred HHHHHHHhCC
Confidence 9988877653
No 144
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=3.7e-23 Score=172.57 Aligned_cols=180 Identities=20% Similarity=0.153 Sum_probs=120.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcch--------hhhhhHHh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSY 75 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 75 (210)
...+|+|+|.+|+|||||+++|++..... ...+..+.+.......+.+. .+.+|||||.+. +...+..+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 34789999999999999999999876532 23333344444444455553 578999999762 33445667
Q ss_pred hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 028303 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQ 154 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 154 (210)
++.+|++|+|+|++++.+... ..+...+.. .+.|+++|+||+|+.... .+..++. ..++ ..+++||++|.
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~----~~~~~~~-~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE----ADAAALW-SLGLGEPHPVSALHGR 185 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc----hhhHHHH-hcCCCCeEEEEcCCCC
Confidence 899999999999998765433 233333332 378999999999985421 1122222 2232 35799999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccccccccCCcccccCCCCCCC
Q 028303 155 NVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPS 195 (210)
Q Consensus 155 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (210)
|++++|+.|.+.+.........+......+.+|.++.|+++
T Consensus 186 gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSS 226 (472)
T PRK03003 186 GVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSS 226 (472)
T ss_pred CcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHH
Confidence 99999999998875522211111223347778888877664
No 145
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=1.7e-22 Score=161.96 Aligned_cols=154 Identities=21% Similarity=0.192 Sum_probs=111.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc---------chhhhhhHHh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ---------ESFRSITRSY 75 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~ 75 (210)
..++|+++|.+|+|||||+|+|++........+..+.+.....+.+++. ..+.+|||+|. +.+.. ....
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~-tle~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRA-TLEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHH-HHHH
Confidence 4589999999999999999999998654333333344555555666432 46889999997 22222 2235
Q ss_pred hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 155 (210)
+..+|++++|+|++++.+...+..|...+......+.|+++|+||+|+.... +.... .....+++++||+++.|
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~-~~~~~~~i~iSAktg~G 339 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERL-EEGYPEAVFVSAKTGEG 339 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHH-HhCCCCEEEEEccCCCC
Confidence 7899999999999998887777666666655444478999999999985421 12111 12224689999999999
Q ss_pred HHHHHHHHHHH
Q 028303 156 VEEAFIKTAAK 166 (210)
Q Consensus 156 i~~~~~~l~~~ 166 (210)
++++++.|.+.
T Consensus 340 I~eL~~~I~~~ 350 (351)
T TIGR03156 340 LDLLLEAIAER 350 (351)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 146
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=8.7e-23 Score=144.77 Aligned_cols=159 Identities=20% Similarity=0.320 Sum_probs=128.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+++|-.++||||++.+|........ .||.+..... +.+. ++.+++||.+|++.++.+|..|+++.+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~--v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET--VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE--EEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 4568999999999999999999987776555 6665554433 3333 688999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-----CeEEEEecCCCCCHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-----LLFLEASARTAQNVE 157 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~ 157 (210)
||+|.++++.+...+..+..+..... .+.|+++++||.|++. ..+..++.+...... -.+..++|.+|+|+.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 99999999999998888777766655 6899999999999976 344555555444332 336788999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 158 EAFIKTAAKILQ 169 (210)
Q Consensus 158 ~~~~~l~~~~~~ 169 (210)
+.+++|.+.+..
T Consensus 168 egl~wl~~~~~~ 179 (181)
T KOG0070|consen 168 EGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHhc
Confidence 999999887754
No 147
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=3.2e-22 Score=159.13 Aligned_cols=160 Identities=17% Similarity=0.128 Sum_probs=114.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh----hhhhHH---hhcc
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----RSITRS---YYRG 78 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~---~~~~ 78 (210)
...|+|+|.+++|||||+++|+.........+.++.......+.+++ ...+.+||+||..+. ..+... .+..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 36799999999999999999998753322222223444444444543 356889999996421 123333 3457
Q ss_pred ccEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCC
Q 028303 79 AAGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA 153 (210)
Q Consensus 79 ~d~~i~V~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 153 (210)
+|++++|+|+++. .+++.+..|.+.+..+.. .+.|+++|+||+|+.+... ..+..+.+.+..+.+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999976 677778888777765532 4689999999999865432 223344555566788999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028303 154 QNVEEAFIKTAAKI 167 (210)
Q Consensus 154 ~~i~~~~~~l~~~~ 167 (210)
.++++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998754
No 148
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=2.7e-22 Score=156.33 Aligned_cols=153 Identities=19% Similarity=0.138 Sum_probs=103.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh--------hhhHHhhccc
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--------SITRSYYRGA 79 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~~ 79 (210)
+|+|+|.+|+|||||+|+|++.........+.++......+...+ ..++.+|||||..... .....++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 689999999999999999999876543332212221222222222 3468899999965321 1234567899
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHH
Q 028303 80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEE 158 (210)
Q Consensus 80 d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~ 158 (210)
|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.+... ..+....+...... +++++||++|.|+++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 9999999999876553 233333332 3689999999999863221 12333344444443 789999999999999
Q ss_pred HHHHHHHHH
Q 028303 159 AFIKTAAKI 167 (210)
Q Consensus 159 ~~~~l~~~~ 167 (210)
+++.|.+.+
T Consensus 155 L~~~l~~~l 163 (270)
T TIGR00436 155 LAAFIEVHL 163 (270)
T ss_pred HHHHHHHhC
Confidence 999987765
No 149
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=1.8e-22 Score=138.43 Aligned_cols=114 Identities=36% Similarity=0.676 Sum_probs=89.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQ--PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
||+|+|++|+|||||+++|.+..+. .....+.+.+.......+......+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 23334445555555667777777799999999998888888889999999999
Q ss_pred EECCChhhHHHHHHH---HHHHHhhcCCCCeEEEEEecCC
Q 028303 86 YDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCD 122 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D 122 (210)
||++++.++.++..+ +..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 999999999887555 4444443 34699999999998
No 150
>PRK04213 GTP-binding protein; Provisional
Probab=99.89 E-value=6.2e-23 Score=153.38 Aligned_cols=151 Identities=21% Similarity=0.208 Sum_probs=101.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC-----------cchhhhhhH
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG-----------QESFRSITR 73 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~ 73 (210)
..++|+++|++|+|||||+++|.+..+.....++ .+.....+.+. .+.+||||| ++.+...+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 4689999999999999999999988765444443 33333333333 478999999 455555555
Q ss_pred Hhhc----cccEEEEEEECCChhhH-H---------HHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 028303 74 SYYR----GAAGALLVYDITRRETF-N---------HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 139 (210)
Q Consensus 74 ~~~~----~~d~~i~V~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 139 (210)
.++. .++++++|+|.+..... + .-......+. ..++|+++|+||+|+.+.. .+...++..
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~ 155 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIAE 155 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHHH
Confidence 5543 45788999998653221 0 0011122222 2378999999999986433 234455555
Q ss_pred HcCC---------eEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 140 ENGL---------LFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 140 ~~~~---------~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
..+. +++++||+++ |+++++++|.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 5554 4799999999 99999999987653
No 151
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.89 E-value=2.4e-22 Score=146.81 Aligned_cols=155 Identities=21% Similarity=0.212 Sum_probs=106.1
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh----hhh---hHHhhccccEEE
Q 028303 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----RSI---TRSYYRGAAGAL 83 (210)
Q Consensus 11 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~~d~~i 83 (210)
++|++|+|||||+++|.+........+..+.+.....+.++. ...+.+|||||.... ..+ ....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998865222222222333333333441 346789999996321 122 234577899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHHhhcC-------CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEec
Q 028303 84 LVYDITRR------ETFNHLSSWLEDARQHAN-------PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA 150 (210)
Q Consensus 84 ~V~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 150 (210)
+|+|++++ .++.....|...+..... .+.|+++|+||+|+....................+++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999988 467777777776654432 36899999999998654433222223344445677999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028303 151 RTAQNVEEAFIKTAAK 166 (210)
Q Consensus 151 ~~~~~i~~~~~~l~~~ 166 (210)
+++.|++++++.+...
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998764
No 152
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.89 E-value=1.9e-23 Score=142.10 Aligned_cols=158 Identities=20% Similarity=0.309 Sum_probs=128.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
.+.+.++|-.++|||||++....+.+.+.-.++.+... ..+..+.+.+.+||.||+..+...|..|.+.+++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 47889999999999999999998888888788777655 45666788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHH-----HHHHcCCeEEEEecCCCCCHHHH
Q 028303 86 YDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQ-----FAKENGLLFLEASARTAQNVEEA 159 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~sa~~~~~i~~~ 159 (210)
+|+.+++.+...+..+..+..... .++|+++++||.|++. ..+...... ......+.+|.+|+++..|++-+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 999999988888877777765544 6899999999999865 333222211 11123456899999999999999
Q ss_pred HHHHHHHHHH
Q 028303 160 FIKTAAKILQ 169 (210)
Q Consensus 160 ~~~l~~~~~~ 169 (210)
.++|+++-..
T Consensus 174 ~~Wli~hsk~ 183 (186)
T KOG0075|consen 174 LDWLIEHSKS 183 (186)
T ss_pred HHHHHHHhhh
Confidence 9999987543
No 153
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.89 E-value=5.3e-22 Score=142.14 Aligned_cols=146 Identities=23% Similarity=0.215 Sum_probs=105.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh--------hhHHhhc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYR 77 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 77 (210)
++|+++|++|+|||||++++.+..... ...++.+.......+..+ ...+.+|||||...+.. .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876432 112222333333334444 35688999999754432 2334667
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157 (210)
Q Consensus 78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 157 (210)
.+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .......+++++|++++.|+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999998777666544332 236899999999998654432 334456789999999999999
Q ss_pred HHHHHHHHHH
Q 028303 158 EAFIKTAAKI 167 (210)
Q Consensus 158 ~~~~~l~~~~ 167 (210)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 154
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=5.8e-22 Score=158.67 Aligned_cols=155 Identities=22% Similarity=0.286 Sum_probs=105.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CceeEEEEEEEEECCEEEEEEEEecCCcch-hhhh-------hHH
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSI-------TRS 74 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~-------~~~ 74 (210)
.+.++|+++|.+|+|||||+++|.+..+...... ..+.......+..++ .++.+|||||... +..+ ...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 4567999999999999999999998877532221 112223333344554 4678999999743 2221 123
Q ss_pred hhccccEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CeEEEEecC
Q 028303 75 YYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASAR 151 (210)
Q Consensus 75 ~~~~~d~~i~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~ 151 (210)
.+..+|++++|+|..+. +.... .|+..+... +.|.++|+||+|+.+. ...++.+++.... ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 46799999999998763 33332 344444332 5678899999998643 2455666665543 579999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 028303 152 TAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 152 ~~~~i~~~~~~l~~~~~ 168 (210)
++.|++++|++|.+.+.
T Consensus 200 tg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 200 SGKNIDGLLEYITSKAK 216 (339)
T ss_pred CccCHHHHHHHHHHhCC
Confidence 99999999999877653
No 155
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=5.7e-22 Score=142.60 Aligned_cols=144 Identities=17% Similarity=0.155 Sum_probs=101.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc----hhhhhhHHhhccccEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----SFRSITRSYYRGAAGAL 83 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 83 (210)
+|+++|++++|||||+++|.+.... ...+.+ ..+... .+|||||.. .+.......++.+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 7999999999999999998865321 111111 222222 269999972 22222233478999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC--eEEEEecCCCCCHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL--LFLEASARTAQNVEEAFI 161 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~sa~~~~~i~~~~~ 161 (210)
+|+|+++..++. ..|+..+ ..+.|+++++||.|+.+ ...+.+.+++...+. +++++|++++.|++++|+
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 999999886642 2333332 23679999999999854 234566777777764 899999999999999999
Q ss_pred HHHHHHHHHHhh
Q 028303 162 KTAAKILQNIQE 173 (210)
Q Consensus 162 ~l~~~~~~~~~~ 173 (210)
+|.+.+.....-
T Consensus 141 ~l~~~~~~~~~~ 152 (158)
T PRK15467 141 YLASLTKQEEAG 152 (158)
T ss_pred HHHHhchhhhcc
Confidence 998887666543
No 156
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=4.3e-22 Score=147.84 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=102.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC----CCCCC---CCCCceeEEEEEEEEEC------------CEEEEEEEEecCCcch
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK----RFQPV---HDLTIGVEFGARMVTID------------GRPIKLQIWDTAGQES 67 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~----~~~~~---~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~ 67 (210)
++|+++|++++|||||+++|+.. .+... ..+..+.......+.+. +..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 11111 11122222222223332 3357899999999976
Q ss_pred hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHH------
Q 028303 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAK------ 139 (210)
Q Consensus 68 ~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~------ 139 (210)
+........+.+|++++|+|+.++........+. +... .+.|+++++||+|+..... ...+++.+.+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5554445567789999999998854333322222 1121 2579999999999864221 11223332221
Q ss_pred -HcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 140 -ENGLLFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 140 -~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
..+++++++||+++.|+++++++|..++.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13578999999999999999999988764
No 157
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.89 E-value=3.5e-21 Score=131.99 Aligned_cols=167 Identities=25% Similarity=0.346 Sum_probs=135.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCC--CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh-hhhhHHhhccccE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP--VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-RSITRSYYRGAAG 81 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~ 81 (210)
...||+|+|..++|||+++..|.-..... +..+|....+....-+-.+..-.+.|+||.|.... ..+-..|+..+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 36899999999999999999988655433 44455444333332233455668999999997766 6678889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 160 (210)
+++||+..+++||+.+...-..+..... ..+|+++++||.|+.+...++.+-+..|++...+..+++++.+...+-+.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 9999999999999988776666655443 679999999999999888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 028303 161 IKTAAKILQNI 171 (210)
Q Consensus 161 ~~l~~~~~~~~ 171 (210)
.++...+.+-+
T Consensus 168 ~~l~~rl~~pq 178 (198)
T KOG3883|consen 168 TYLASRLHQPQ 178 (198)
T ss_pred HHHHHhccCCc
Confidence 99988775433
No 158
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=1.1e-21 Score=144.86 Aligned_cols=156 Identities=22% Similarity=0.182 Sum_probs=109.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc--------------eeEEEEEEEEECCEEEEEEEEecCCcchhhhhhH
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI--------------GVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR 73 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 73 (210)
+|+|+|.+|+|||||+++|.+........... +.+.......+......+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999999887655432211 1112222222222346789999999998888889
Q ss_pred HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHH-----------
Q 028303 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKE----------- 140 (210)
Q Consensus 74 ~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~----------- 140 (210)
.+++.+|++++|+|+.++...... .++..+.. .+.|+++++||+|+...... ..+++.+.+..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR-EHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 999999999999999886543322 33333332 47899999999998652221 12333333333
Q ss_pred ---cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 141 ---NGLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 141 ---~~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
...+++++|++++.|+++++++|.+.+
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 346799999999999999999988775
No 159
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.88 E-value=3.1e-21 Score=158.88 Aligned_cols=154 Identities=21% Similarity=0.174 Sum_probs=114.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh--------hHHh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI--------TRSY 75 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 75 (210)
..++|+++|++|+|||||+|+|++..... ...+..+.+.....+.+++. .+.+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 45899999999999999999999875422 22233355566666667664 4689999998654322 2457
Q ss_pred hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 155 (210)
++.+|++++|+|++++.+.... |+..+.. .+.|+++|+||+|+.+. +...++...+.+++++|+++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 7899999999999998776654 5554432 36899999999998543 12344556677899999998 69
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028303 156 VEEAFIKTAAKILQNIQ 172 (210)
Q Consensus 156 i~~~~~~l~~~~~~~~~ 172 (210)
++++|+.|.+.+.....
T Consensus 348 I~~~~~~L~~~i~~~~~ 364 (442)
T TIGR00450 348 IKALVDLLTQKINAFYS 364 (442)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999998876653
No 160
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=2.3e-21 Score=164.91 Aligned_cols=156 Identities=23% Similarity=0.267 Sum_probs=114.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCC------CceeEEEEEEEE--E---CCEEEEEEEEecCCcch
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDL------TIGVEFGARMVT--I---DGRPIKLQIWDTAGQES 67 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~--~---~~~~~~~~i~D~~G~~~ 67 (210)
.-+|+++|+.++|||||+++|+... +...+.. ..+.++....+. + ++..+.+++|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3589999999999999999998642 2222221 124444433332 2 45668999999999999
Q ss_pred hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC---e
Q 028303 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL---L 144 (210)
Q Consensus 68 ~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 144 (210)
|...+..+++.+|++|+|+|++++.+......|+..+. .++|+++|+||+|+.+.. ..+...++....++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999999776666666554432 368999999999986422 12223344444454 4
Q ss_pred EEEEecCCCCCHHHHHHHHHHHH
Q 028303 145 FLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 145 ~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
++++||++|.|++++|+.|.+.+
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC
Confidence 89999999999999999988765
No 161
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=1.1e-21 Score=140.54 Aligned_cols=145 Identities=19% Similarity=0.112 Sum_probs=99.1
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCC--CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh--------hhHHhhccc
Q 028303 10 IIIGDTGVGKSCLLLQFTDKRFQ--PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYRGA 79 (210)
Q Consensus 10 ~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~ 79 (210)
+++|.+|+|||||+++|.+.... .... ..+.+........++ ..+.+|||||...+.. .....++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~-~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTP-GVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCC-CceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 47999999999999999987522 2222 223333333333443 5688999999876443 334567889
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHH
Q 028303 80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEE 158 (210)
Q Consensus 80 d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~ 158 (210)
|++++|+|+.++.+.... .+...+.. .+.|+++|+||+|+.+.... ...+...+. +++++|++++.|+++
T Consensus 78 d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 78 DVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred CEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHH
Confidence 999999999876543332 12222222 26899999999998653321 223334455 689999999999999
Q ss_pred HHHHHHHH
Q 028303 159 AFIKTAAK 166 (210)
Q Consensus 159 ~~~~l~~~ 166 (210)
++++|.++
T Consensus 149 l~~~l~~~ 156 (157)
T cd01894 149 LLDAILEL 156 (157)
T ss_pred HHHHHHhh
Confidence 99999875
No 162
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=6.3e-21 Score=161.53 Aligned_cols=153 Identities=21% Similarity=0.209 Sum_probs=113.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
...+|+++|++++|||||+++|.+..+.....+..+.+.....+.+++.. .+.+|||||++.|..++...+..+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 45789999999999999999999988776655555555555555554432 68899999999999999989999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEecCCCCC
Q 028303 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG---------LLFLEASARTAQN 155 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~~~~ 155 (210)
|+|++++....... .+..+. ..++|+++++||+|+.+. ..+++...+...+ .+++++||++|.|
T Consensus 165 VVda~dgv~~qT~e-~i~~~~---~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 165 VVAADDGVMPQTIE-AISHAK---AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEECCCCCCHhHHH-HHHHHH---HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 99998743222221 222222 237899999999998642 2344444433222 4699999999999
Q ss_pred HHHHHHHHHH
Q 028303 156 VEEAFIKTAA 165 (210)
Q Consensus 156 i~~~~~~l~~ 165 (210)
++++|++|..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999999864
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=3.6e-21 Score=160.65 Aligned_cols=162 Identities=18% Similarity=0.145 Sum_probs=111.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCCc----------chhhhhh-
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----------ESFRSIT- 72 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~- 72 (210)
..++|+++|.+++|||||+++|++.... ....++.+.+.....+.+++.. +.+|||||. +.+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 4589999999999999999999988653 2233333444444555666654 579999995 2333332
Q ss_pred HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHH-HcCCeEEEEe
Q 028303 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAK-ENGLLFLEAS 149 (210)
Q Consensus 73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~-~~~~~~~~~s 149 (210)
..+++.+|++++|+|++++.+..++. ++..+.. .+.|+|+|+||+|+.+.... ...++..... ...++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 34578999999999999988777664 3333332 37899999999999642211 1112222111 2346899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Q 028303 150 ARTAQNVEEAFIKTAAKILQNIQ 172 (210)
Q Consensus 150 a~~~~~i~~~~~~l~~~~~~~~~ 172 (210)
|++|.|++++|+.+.+.+.....
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 364 AKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999887754433
No 164
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=5e-21 Score=156.88 Aligned_cols=158 Identities=18% Similarity=0.139 Sum_probs=110.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh--hhh------hHHhhcc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF--RSI------TRSYYRG 78 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~------~~~~~~~ 78 (210)
++|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. ..+.+|||+|.... ..+ +...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 68999999999999999999987765433333344444444555542 25679999997321 122 2234678
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe-EEEEecCCCCCHH
Q 028303 79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVE 157 (210)
Q Consensus 79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~ 157 (210)
+|++++|+|++++.+...+..|...+......+.|+++|+||+|+..... .... ....+.+ ++++||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence 99999999999988877776655555544445789999999999864211 1111 1123444 5889999999999
Q ss_pred HHHHHHHHHHHHH
Q 028303 158 EAFIKTAAKILQN 170 (210)
Q Consensus 158 ~~~~~l~~~~~~~ 170 (210)
++++.|.+.+...
T Consensus 352 eL~e~I~~~l~~~ 364 (426)
T PRK11058 352 LLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999887543
No 165
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.8e-20 Score=152.90 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=113.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch----hhhhhHHh---hccc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSITRSY---YRGA 79 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~ 79 (210)
..|+|+|.|+||||||+++|++.+......+.++.......+.++. ...+.+||+||..+ ...+...+ +..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 4799999999999999999998763322223323333333333431 34688999999632 22233333 4568
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 028303 80 AGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ 154 (210)
Q Consensus 80 d~~i~V~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 154 (210)
+++++|+|+++. +++++...|...+..+.. .+.|+++|+||+|+.+ ..+.+..+....+.+++++||+++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999864 566777777777766533 4689999999999843 2244555666666789999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 028303 155 NVEEAFIKTAAKILQN 170 (210)
Q Consensus 155 ~i~~~~~~l~~~~~~~ 170 (210)
|+++++++|.+.+...
T Consensus 314 GI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 314 GLDELLYAVAELLEET 329 (424)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999998876543
No 166
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=2.2e-21 Score=145.19 Aligned_cols=159 Identities=21% Similarity=0.189 Sum_probs=101.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCC---CCCCCCCceeEEEEEEEEEC---------------------------C----
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRF---QPVHDLTIGVEFGARMVTID---------------------------G---- 52 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 52 (210)
++|+++|+.|+|||||+..+.+... ........+.........+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975521 11111111111111111110 1
Q ss_pred EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CC
Q 028303 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VS 130 (210)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~ 130 (210)
....+.+|||||++.+...+...+..+|++++|+|++++.........+..+... ...|+++|+||+|+.+... ..
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1157899999999998888888888999999999999742111112222222222 1247899999999864221 11
Q ss_pred HHHHHHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 131 KEEGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 131 ~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
.+++++++... .++++++||++++|++++++.|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 23344444432 56799999999999999999987643
No 167
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.87 E-value=4.6e-21 Score=158.63 Aligned_cols=148 Identities=25% Similarity=0.245 Sum_probs=109.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh--------hHHhh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI--------TRSYY 76 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 76 (210)
.++|+++|++|+|||||+|+|++..... ...+..+.+.....+.+++ ..+.+|||||...+... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4799999999999999999999876432 2233334455555566665 45789999998654321 23467
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (210)
Q Consensus 77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 156 (210)
+.+|++++|+|++++.+......|.. ..+.|+++|+||+|+....... .....+++++|++++.|+
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI 358 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGI 358 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCH
Confidence 89999999999999877665444432 3468999999999996533221 334567999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028303 157 EEAFIKTAAKILQ 169 (210)
Q Consensus 157 ~~~~~~l~~~~~~ 169 (210)
++++++|.+.+..
T Consensus 359 ~~L~~~L~~~l~~ 371 (449)
T PRK05291 359 DELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888754
No 168
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=5.9e-21 Score=140.21 Aligned_cols=148 Identities=18% Similarity=0.204 Sum_probs=99.8
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc----------hhhhhh
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----------SFRSIT 72 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 72 (210)
.+..++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ .+.+|||||.. .+....
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 45678999999999999999999998864444444444444444444442 58899999942 233344
Q ss_pred HHhhc---cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC--CCCHHHHHHHHHHcC--CeE
Q 028303 73 RSYYR---GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR--AVSKEEGEQFAKENG--LLF 145 (210)
Q Consensus 73 ~~~~~---~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~--~~~ 145 (210)
..+++ .+|++++|+|++++.+..+.. ++..+.. .+.|+++++||+|+.... ....+++++.+...+ .++
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 44554 357999999998865544432 2233322 368999999999986422 122344555555543 479
Q ss_pred EEEecCCCCCHH
Q 028303 146 LEASARTAQNVE 157 (210)
Q Consensus 146 ~~~sa~~~~~i~ 157 (210)
+++||++++|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999873
No 169
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=1.6e-20 Score=139.65 Aligned_cols=158 Identities=19% Similarity=0.173 Sum_probs=105.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc----------chhhhhhH
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----------ESFRSITR 73 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~ 73 (210)
+..++|+++|++|+|||||+++|.+..+.....++.+.+.......+ ...+.+|||||. +.+.....
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 45689999999999999999999987655555555454444433332 257889999994 33444445
Q ss_pred Hhhcc---ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHHcCCeEEEE
Q 028303 74 SYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKENGLLFLEA 148 (210)
Q Consensus 74 ~~~~~---~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~ 148 (210)
.+++. .+++++|+|+.++.+.... .....+. . .+.|+++++||+|+...... ..+++...+.....+++++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~-~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 174 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK-E--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF 174 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH-H--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 55554 4688899998875443221 1111222 1 36899999999998643221 1223444444446789999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 028303 149 SARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 149 sa~~~~~i~~~~~~l~~~~~ 168 (210)
|++++.|++++++.|.+.+.
T Consensus 175 Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 175 SSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EcCCCCCHHHHHHHHHHHhc
Confidence 99999999999999877653
No 170
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=3.1e-21 Score=159.83 Aligned_cols=177 Identities=20% Similarity=0.143 Sum_probs=116.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEecCCc--------chhhhhhHHhhcc
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ--------ESFRSITRSYYRG 78 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~ 78 (210)
+|+++|.+|+|||||+|+|++...... ..+..+.+.......+++ ..+.+|||||. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998764322 222333334444445554 35889999995 3444566678899
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHH
Q 028303 79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVE 157 (210)
Q Consensus 79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 157 (210)
+|++++|+|+.++.+.... .+...+.. .+.|+++|+||+|+.+.... ..++ ...++ +++++||+++.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~~-~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAEF-YSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHHH-HhcCCCCeEEEeCCcCCChH
Confidence 9999999999875443321 22222222 26899999999998653321 2222 34455 69999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCcccccCCCCCCC
Q 028303 158 EAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPS 195 (210)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (210)
++++.+.+.+.........+.....-+.+|....|+++
T Consensus 150 ~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSs 187 (429)
T TIGR03594 150 DLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKST 187 (429)
T ss_pred HHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHH
Confidence 99999887764422111111111225667777766654
No 171
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=1.5e-20 Score=135.57 Aligned_cols=156 Identities=20% Similarity=0.116 Sum_probs=102.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh--------hhHHhhc
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYR 77 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 77 (210)
..+|+++|++|+|||||+++|.+.................. .........+.+|||||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998765433322212111111 12223346788999999653322 3344578
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCeEEEEecCCCCCH
Q 028303 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNV 156 (210)
Q Consensus 78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i 156 (210)
.+|++++|+|++++... ....+...+... +.|+++|+||+|+........+....+.... ..+++++|++++.++
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 89999999999987221 112222333222 6899999999998643322223333333333 367999999999999
Q ss_pred HHHHHHHHHH
Q 028303 157 EEAFIKTAAK 166 (210)
Q Consensus 157 ~~~~~~l~~~ 166 (210)
+++++.|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 172
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=9.3e-21 Score=157.20 Aligned_cols=175 Identities=21% Similarity=0.142 Sum_probs=115.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcch--------hhhhhHHhhc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSYYR 77 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 77 (210)
++|+++|.+|+|||||+++|.+..... ...+..+.+.......+++ ..+.+|||||.+. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 589999999999999999999876432 2223334444444455655 6789999999876 2333556788
Q ss_pred cccEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 028303 78 GAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQ 154 (210)
Q Consensus 78 ~~d~~i~V~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 154 (210)
.+|++++|+|+.++.+..+ +..|+. . .+.|+++|+||+|+.+. .....++ ...++ .++++||+++.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 9999999999988644322 223322 2 27899999999996431 1223333 23455 38999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccccccccCCcccccCCCCCCC
Q 028303 155 NVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPS 195 (210)
Q Consensus 155 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (210)
|++++++.+.+...... ...........+.+|.++.|+++
T Consensus 149 gv~~l~~~I~~~~~~~~-~~~~~~~~~~v~ivG~~n~GKSt 188 (435)
T PRK00093 149 GIGDLLDAILEELPEEE-EEDEEDEPIKIAIIGRPNVGKSS 188 (435)
T ss_pred CHHHHHHHHHhhCCccc-cccccccceEEEEECCCCCCHHH
Confidence 99999999887332211 11111122236677777777654
No 173
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=2e-20 Score=135.99 Aligned_cols=155 Identities=24% Similarity=0.149 Sum_probs=102.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCceeEEEEEEEEECCEEEEEEEEecCCcchhh----------h-hhH
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR----------S-ITR 73 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~-~~~ 73 (210)
.++|+++|++|+|||||+++|++....... .+..+.......+..++. .+.+|||||..... . ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 478999999999999999999987643222 222223333333444543 46799999964321 1 122
Q ss_pred HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-Hc----CCeEEEE
Q 028303 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-EN----GLLFLEA 148 (210)
Q Consensus 74 ~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~~~ 148 (210)
..++.+|++++|+|+.++.+..... ++..+.. .+.|+++++||+|+.+......+...+... .. ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 3567899999999999886654432 2222222 368999999999986543222233222222 22 3679999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 028303 149 SARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 149 sa~~~~~i~~~~~~l~~~ 166 (210)
|++++.|++++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998763
No 174
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.5e-20 Score=155.71 Aligned_cols=159 Identities=23% Similarity=0.137 Sum_probs=107.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh-----------h
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-----------T 72 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~ 72 (210)
..++|+++|.+++|||||+++|++...... ..+..+.+.....+..++. .+.+|||||....... .
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 458999999999999999999998764322 2222233333333444543 6789999996433221 1
Q ss_pred HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEE
Q 028303 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLE 147 (210)
Q Consensus 73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~ 147 (210)
..+++.+|++++|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.+. ....++....... ..+++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceEE
Confidence 34678999999999999887765543 2233222 36899999999998621 1112222222221 2478999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 028303 148 ASARTAQNVEEAFIKTAAKILQN 170 (210)
Q Consensus 148 ~sa~~~~~i~~~~~~l~~~~~~~ 170 (210)
+||++|.|++++|+++.+.+...
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998876543
No 175
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=2.5e-20 Score=153.90 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=110.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch----hhhh---hHHhhcc
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSI---TRSYYRG 78 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~ 78 (210)
...|+|+|.|+||||||+++|++........+..+.......+.+.+ ..+.+||+||..+ ...+ ....+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 46899999999999999999998754332223334444444444444 5688999999532 1111 2234578
Q ss_pred ccEEEEEEECCCh----hhHHHHHHHHHHHHhhc-----------CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC
Q 028303 79 AAGALLVYDITRR----ETFNHLSSWLEDARQHA-----------NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL 143 (210)
Q Consensus 79 ~d~~i~V~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 143 (210)
+|++++|+|+++. +.+.++..+...+..+. ....|+|+|+||+|+.+.... .+.....+...++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~ 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence 9999999999753 34444444444443332 136899999999998643321 2233334445578
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303 144 LFLEASARTAQNVEEAFIKTAAKILQNI 171 (210)
Q Consensus 144 ~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 171 (210)
+++++||+++.|+++++++|.+.+....
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 8999999999999999999988876543
No 176
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=1.8e-20 Score=159.25 Aligned_cols=154 Identities=21% Similarity=0.224 Sum_probs=114.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC---CCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK---RFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
+.|+++|++++|||||+++|++. .+.+++..+.+.+.....+..++ ..+.+||+||++.|.......+..+|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999973 33344455556666655566655 67899999999999988888899999999
Q ss_pred EEEECCCh---hhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCC--CHHHHHHHHHHc----CCeEEEEecCCC
Q 028303 84 LVYDITRR---ETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV--SKEEGEQFAKEN----GLLFLEASARTA 153 (210)
Q Consensus 84 ~V~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~sa~~~ 153 (210)
+|+|++++ .+.+.+ ..+.. .++| +++++||+|+.+.... ..+++..++... +++++++|++++
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 99999984 333332 22222 2677 9999999999653321 123455555543 478999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 028303 154 QNVEEAFIKTAAKILQ 169 (210)
Q Consensus 154 ~~i~~~~~~l~~~~~~ 169 (210)
.|++++++.|...+..
T Consensus 152 ~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 152 QGIGELKKELKNLLES 167 (581)
T ss_pred CCchhHHHHHHHHHHh
Confidence 9999999988766544
No 177
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=2.1e-20 Score=160.68 Aligned_cols=156 Identities=19% Similarity=0.184 Sum_probs=112.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEE--EEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM--VTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
....|+|+|+.++|||||+++|....+.....+..+.+..... +..++....+.||||||++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 4579999999999999999999988776544443333333222 33334457899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHH-------HHcC--CeEEEEecCCC
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-------KENG--LLFLEASARTA 153 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~sa~~~ 153 (210)
|+|+|++++........ +..+. ..++|+|+++||+|+.... .+++...+ ..++ ++++++||++|
T Consensus 323 ILVVDA~dGv~~QT~E~-I~~~k---~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 323 ILIIAADDGVKPQTIEA-INYIQ---AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEECcCCCChhhHHH-HHHHH---hcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 99999988533222221 22222 2478999999999986522 23232222 1222 68999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028303 154 QNVEEAFIKTAAKI 167 (210)
Q Consensus 154 ~~i~~~~~~l~~~~ 167 (210)
.|++++++.|....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999987754
No 178
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.1e-20 Score=125.57 Aligned_cols=156 Identities=19% Similarity=0.351 Sum_probs=122.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
+.++|+++|-.++||||++.+|.-... ....+|.+... .+ +..+++.+.+||.+|++..+.+|..|+....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnv--et--VtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNV--ET--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-cccccccceeE--EE--EEeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 468999999999999999999986543 33444544443 33 34456789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-----CeEEEEecCCCCCHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-----LLFLEASARTAQNVEE 158 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~ 158 (210)
|+|..+.+..++.+..+-.+....+ .+.|++|.+||.|++. ..+.+++..++.... ..+.++++.+++++.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 9999998777777766655543333 6899999999999976 445677776655433 3377999999999999
Q ss_pred HHHHHHHHH
Q 028303 159 AFIKTAAKI 167 (210)
Q Consensus 159 ~~~~l~~~~ 167 (210)
-|.+|...+
T Consensus 169 glswlsnn~ 177 (180)
T KOG0071|consen 169 GLSWLSNNL 177 (180)
T ss_pred HHHHHHhhc
Confidence 999987654
No 179
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=4.2e-20 Score=160.13 Aligned_cols=153 Identities=21% Similarity=0.241 Sum_probs=111.4
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
....|+|+|+.++|||||+++|....+.....+..+.+.....+.+++ ..+.||||||++.|..++...+..+|++|+
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 568899999999999999999998777655444444444444455554 568899999999999999989999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH-------HHHcC--CeEEEEecCCCCC
Q 028303 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF-------AKENG--LLFLEASARTAQN 155 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~sa~~~~~ 155 (210)
|||++++..-..... +..+. ..++|+|+++||+|+.+.. .+.+... ...++ ++++++||++|.|
T Consensus 367 VVdAddGv~~qT~e~-i~~a~---~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~G 439 (787)
T PRK05306 367 VVAADDGVMPQTIEA-INHAK---AAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEG 439 (787)
T ss_pred EEECCCCCCHhHHHH-HHHHH---hcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCC
Confidence 999998432222211 22222 2478999999999986422 2222221 22222 6799999999999
Q ss_pred HHHHHHHHHHH
Q 028303 156 VEEAFIKTAAK 166 (210)
Q Consensus 156 i~~~~~~l~~~ 166 (210)
++++|++|...
T Consensus 440 I~eLle~I~~~ 450 (787)
T PRK05306 440 IDELLEAILLQ 450 (787)
T ss_pred chHHHHhhhhh
Confidence 99999998753
No 180
>PRK00089 era GTPase Era; Reviewed
Probab=99.85 E-value=3e-20 Score=146.50 Aligned_cols=158 Identities=20% Similarity=0.150 Sum_probs=104.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh--------hhhHHhhc
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--------SITRSYYR 77 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~ 77 (210)
.-.|+|+|++|+|||||+|+|++.........+.+.......+... ...++.+|||||..... ......+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4579999999999999999999987654433332222222222222 23678999999964322 23344678
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CeEEEEecCCCCCH
Q 028303 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNV 156 (210)
Q Consensus 78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i 156 (210)
.+|++++|+|++++... ........+. ..+.|+++|+||+|+........+....+....+ .+++++||+++.|+
T Consensus 84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 89999999999983221 1122222222 2368999999999986432222233444444333 56999999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 157 EEAFIKTAAKIL 168 (210)
Q Consensus 157 ~~~~~~l~~~~~ 168 (210)
+++++.|.+.+.
T Consensus 160 ~~L~~~L~~~l~ 171 (292)
T PRK00089 160 DELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHhCC
Confidence 999999887763
No 181
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.85 E-value=3.8e-21 Score=142.26 Aligned_cols=160 Identities=23% Similarity=0.198 Sum_probs=107.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC------------------CCCceeEEEEEEEEECCEEEEEEEEecCCcc
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 66 (210)
...+|+++|+.++|||||+.+|+........ ....+.......+........+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999854321110 0111222222222212445678999999999
Q ss_pred hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-CCHHHHH-HHHHHc---
Q 028303 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGE-QFAKEN--- 141 (210)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~-~~~~~~--- 141 (210)
.|.......++.+|++|+|+|+.++.... ....+..+... ++|+++++||+|+...+. ...++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 99998888999999999999999764422 23333444333 789999999999862111 0112222 222222
Q ss_pred ---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 142 ---GLLFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 142 ---~~~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
.++++++||.+|.|++++++.|.+.+.
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 357999999999999999999887653
No 182
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.85 E-value=9.4e-20 Score=136.25 Aligned_cols=117 Identities=16% Similarity=0.341 Sum_probs=88.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccc-cEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGA-AGALLVY 86 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~V~ 86 (210)
+|+++|++|||||||+++|....+......+ ............+....+.+||+||+..+...+..+++.+ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988765554433 2222222122223456789999999999998888899998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHhh---cCCCCeEEEEEecCCCCC
Q 028303 87 DITRR-ETFNHLSSWLEDARQH---ANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 87 d~~~~-~s~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~ 125 (210)
|+.+. .++..+..|+..+... ...++|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99997 6677766666554332 225799999999999864
No 183
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.6e-21 Score=134.68 Aligned_cols=161 Identities=25% Similarity=0.353 Sum_probs=123.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCC-----C--CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF-----Q--PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYY 76 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 76 (210)
...+.|+++|.-++|||||+.++...-. . ....+|.+..... +.+. ...+.+||.+|++..+++|..|+
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~--i~v~--~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGT--IEVC--NAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecc--eeec--cceeEEEEcCChHHHHHHHHHHH
Confidence 4568899999999999999998764311 1 1223344443333 3334 45789999999999999999999
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHH---H---cCCeEEEEe
Q 028303 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK---E---NGLLFLEAS 149 (210)
Q Consensus 77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~---~~~~~~~~s 149 (210)
..+|++|+|+|+++++-++.....+..+..... .++|+++.+||.|+.+.. ..++++..+. . ...++.++|
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~--~~~El~~~~~~~e~~~~rd~~~~pvS 168 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM--EAAELDGVFGLAELIPRRDNPFQPVS 168 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh--hHHHHHHHhhhhhhcCCccCccccch
Confidence 999999999999999999888877666654433 789999999999997633 3345544443 2 246689999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 028303 150 ARTAQNVEEAFIKTAAKILQN 170 (210)
Q Consensus 150 a~~~~~i~~~~~~l~~~~~~~ 170 (210)
|.+|+|+++..+|+.+.+.+.
T Consensus 169 al~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 169 ALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999888766
No 184
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=1.1e-20 Score=151.50 Aligned_cols=180 Identities=19% Similarity=0.089 Sum_probs=123.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh---------hhhHHhh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR---------SITRSYY 76 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~ 76 (210)
..|+++|.|++|||||+|||++.+.+-. ..+..+.+.......+.+.. +.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 6799999999999999999999876553 23333444444445555544 8899999965322 2455677
Q ss_pred ccccEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 028303 77 RGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ 154 (210)
Q Consensus 77 ~~~d~~i~V~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 154 (210)
..+|++|||+|...+.+-.+ +..++ + . .+.|+|+|+||+|-.. ..+.+.+++...--..+.+||.+|.
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~L---r-~--~~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~Hg~ 151 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKIL---R-R--SKKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEHGR 151 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHH---H-h--cCCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhhcc
Confidence 89999999999988544322 22332 2 2 2689999999999642 2233444555444568999999999
Q ss_pred CHHHHHHHHHHHHH-HHHhhccccccccCCcccccCCCCCCCCCC
Q 028303 155 NVEEAFIKTAAKIL-QNIQEGALDAVNDSGIKVGYGRGQGPSGAR 198 (210)
Q Consensus 155 ~i~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (210)
|+.++++.+++.+. ....+...+...-+.+.+|.++.++|+.-|
T Consensus 152 Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN 196 (444)
T COG1160 152 GIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLIN 196 (444)
T ss_pred CHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHH
Confidence 99999999998874 222222111123448889999998887543
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=2.8e-20 Score=162.00 Aligned_cols=179 Identities=19% Similarity=0.114 Sum_probs=115.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCceeEEEEEEEEECCEEEEEEEEecCCcch--------hhhhhHHhh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSYY 76 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 76 (210)
..+|+++|.+++|||||+|+|++...... ..+..+.+.......+++ ..+.+|||||.+. +......++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 47899999999999999999998764322 223323333333333443 4678999999653 233455678
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCC
Q 028303 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQN 155 (210)
Q Consensus 77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~ 155 (210)
+.+|++++|+|+++.....+ ..|...+.. .+.|+++|+||+|+.+.. .....+.. .+. ..+++||+++.|
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~-lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWK-LGLGEPYPISAMHGRG 423 (712)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHH-cCCCCeEEEECCCCCC
Confidence 89999999999987432211 133334433 378999999999985421 12222222 222 357999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc--ccccccCCcccccCCCCCCC
Q 028303 156 VEEAFIKTAAKILQNIQEGA--LDAVNDSGIKVGYGRGQGPS 195 (210)
Q Consensus 156 i~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 195 (210)
+++++++|.+.+....++.. ........+.+|.++.|+++
T Consensus 424 I~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSS 465 (712)
T PRK09518 424 VGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSS 465 (712)
T ss_pred chHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHH
Confidence 99999999988754211110 01122347778888866653
No 186
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=1.1e-19 Score=147.50 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=111.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh-------hhhhHHhhccc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-------RSITRSYYRGA 79 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~ 79 (210)
..|+|+|.|+||||||+|+|++.+......+.++.......+.+.+ ...+.++||||.... .......+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 4799999999999999999998764222223333333443344432 235889999996431 11222357789
Q ss_pred cEEEEEEECC---ChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CeEEEEecCC
Q 028303 80 AGALLVYDIT---RRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASART 152 (210)
Q Consensus 80 d~~i~V~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~ 152 (210)
|++++|+|++ +...+.....|...+..... .+.|+++|+||+|+...... .+.+..+....+ .+++++||++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence 9999999998 44566667777777665432 35899999999998643322 233444444433 4689999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028303 153 AQNVEEAFIKTAAKILQN 170 (210)
Q Consensus 153 ~~~i~~~~~~l~~~~~~~ 170 (210)
+.+++++++.|.+.+...
T Consensus 318 g~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 318 GLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CcCHHHHHHHHHHHhhhC
Confidence 999999999998877543
No 187
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=6.5e-20 Score=156.20 Aligned_cols=162 Identities=23% Similarity=0.269 Sum_probs=114.1
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCCC--C-----CCC------CCCceeEEEEEEEEE-----CCEEEEEEEEec
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRF--Q-----PVH------DLTIGVEFGARMVTI-----DGRPIKLQIWDT 62 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~ 62 (210)
|..++.-+|+++|+.++|||||+.+|+...- . ... ....+.++......+ ++..+.+++|||
T Consensus 2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDT 81 (600)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDT 81 (600)
T ss_pred CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEEC
Confidence 3445667999999999999999999986321 0 111 011233333222222 455788999999
Q ss_pred CCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC
Q 028303 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG 142 (210)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 142 (210)
||+..|...+..+++.+|++|+|+|++++........|.... ..++|+++|+||+|+.+... .....++....+
T Consensus 82 PGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg 155 (600)
T PRK05433 82 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIG 155 (600)
T ss_pred CCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhC
Confidence 999999999999999999999999999876555555554332 13689999999999864221 122233434444
Q ss_pred Ce---EEEEecCCCCCHHHHHHHHHHHHH
Q 028303 143 LL---FLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 143 ~~---~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
+. ++++||+++.|++++++.|.+.+.
T Consensus 156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 156 IDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred CCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 43 899999999999999999887664
No 188
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=7.5e-21 Score=134.88 Aligned_cols=161 Identities=30% Similarity=0.560 Sum_probs=140.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++++++|..|.|||++++++....|...+.+|.+.......+.-+.+.+++..|||+|++.+..+...++-...+.|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 47999999999999999999999999999999999999999887777668999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
+||++...+..++..|...+.+.++ ++|+++++||.|..+.. .......+....++.|+++|++.+.|+..-|-++.
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La 165 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA 165 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHh
Confidence 9999999999999999988877654 69999999999986543 12233345556678899999999999999999998
Q ss_pred HHHH
Q 028303 165 AKIL 168 (210)
Q Consensus 165 ~~~~ 168 (210)
+.+.
T Consensus 166 rKl~ 169 (216)
T KOG0096|consen 166 RKLT 169 (216)
T ss_pred hhhc
Confidence 8764
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.84 E-value=6.6e-20 Score=131.00 Aligned_cols=151 Identities=21% Similarity=0.133 Sum_probs=103.0
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh-------hhHHhhccccEE
Q 028303 11 IIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-------ITRSYYRGAAGA 82 (210)
Q Consensus 11 v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~d~~ 82 (210)
++|++|+|||||++++.+..... ......+............ ...+.+||+||...... ....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999999875542 2222223333333332222 45789999999765543 444578899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH---HHHHHHHHcCCeEEEEecCCCCCHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE---EGEQFAKENGLLFLEASARTAQNVEEA 159 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~sa~~~~~i~~~ 159 (210)
++|+|+.++....... +..... ..+.|+++|+||+|+......... ...........+++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999987655554 233322 247899999999998654322211 112233334678999999999999999
Q ss_pred HHHHHHH
Q 028303 160 FIKTAAK 166 (210)
Q Consensus 160 ~~~l~~~ 166 (210)
+++|.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998765
No 190
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.84 E-value=1.3e-19 Score=154.24 Aligned_cols=146 Identities=20% Similarity=0.211 Sum_probs=107.7
Q ss_pred cCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh------hHHhh--ccccEEEE
Q 028303 13 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI------TRSYY--RGAAGALL 84 (210)
Q Consensus 13 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~ 84 (210)
|++|+|||||+|+|++........+..+.+.....+.+++. .+++|||||+..+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999988764444455556665555666654 5789999998766543 33333 37899999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
|+|+++.+.. ..+...+.. .+.|+++++||+|+.+..... .+.+.+.+..+++++++||+++.|++++++.+.
T Consensus 79 VvDat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999875421 222222222 378999999999986554444 346777888899999999999999999999998
Q ss_pred HHH
Q 028303 165 AKI 167 (210)
Q Consensus 165 ~~~ 167 (210)
+.+
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 191
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=5.7e-19 Score=125.25 Aligned_cols=155 Identities=24% Similarity=0.355 Sum_probs=118.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCC--------CCC----CCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------VHD----LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (210)
-+..||+|.|+.++||||+++++....... .+. .|..+++... .+.+ ...+++++||||++|...
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~--~~~~-~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI--ELDE-DTGVHLFGTPGQERFKFM 84 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccce--EEcC-cceEEEecCCCcHHHHHH
Confidence 456899999999999999999998775311 111 1222333322 2222 346889999999999999
Q ss_pred hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCeEEEEe
Q 028303 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN--GLLFLEAS 149 (210)
Q Consensus 72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s 149 (210)
|..+.+.++++|+++|.+.+..+ +....++.+.... .+|++|+.||.|+.+ ..+.+.+++..... .+++++.+
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~ 159 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEID 159 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeee
Confidence 99999999999999999999887 4445455444442 289999999999976 45567777777655 78999999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 028303 150 ARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 150 a~~~~~i~~~~~~l~~~ 166 (210)
+.++++..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999988887654
No 192
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=3e-19 Score=136.20 Aligned_cols=159 Identities=21% Similarity=0.123 Sum_probs=111.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch--------hhhhhHHh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSY 75 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 75 (210)
-+.--|+++|.|++|||||+|++.+.+.+-.+....++......+...+ +.++.++||||... ........
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 3456789999999999999999999998877776656555555554444 67899999999432 22244556
Q ss_pred hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-c-CCeEEEEecCCC
Q 028303 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-N-GLLFLEASARTA 153 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~-~~~~~~~sa~~~ 153 (210)
+..+|+++||+|++++... .-...++.+.. .+.|+++++||+|......... ...+++.. . ...++++||+++
T Consensus 83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~-~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLL-KLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred hccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHH-HHHHHHHhhCCcceEEEeecccc
Confidence 7899999999999985332 12223333333 3679999999999866444212 22222222 2 236999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 028303 154 QNVEEAFIKTAAKIL 168 (210)
Q Consensus 154 ~~i~~~~~~l~~~~~ 168 (210)
.+++.+.+.+...+.
T Consensus 158 ~n~~~L~~~i~~~Lp 172 (298)
T COG1159 158 DNVDTLLEIIKEYLP 172 (298)
T ss_pred CCHHHHHHHHHHhCC
Confidence 999998887766553
No 193
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.83 E-value=5.9e-19 Score=153.61 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=110.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh----------hHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI----------TRSY 75 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~ 75 (210)
.++|+++|++|||||||+|+|++........ .+.+.......+.....++.+|||||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 4789999999999999999999876533222 334444444444555567899999997655321 2223
Q ss_pred h--ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCC
Q 028303 76 Y--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA 153 (210)
Q Consensus 76 ~--~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 153 (210)
+ ..+|++++|+|+++.+.. ..+...+.. .+.|+++++||+|+.+..... .+.+++.+..+++++++|++++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecC
Confidence 2 478999999999986542 223334433 378999999999987544443 4566777888999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028303 154 QNVEEAFIKTAAKI 167 (210)
Q Consensus 154 ~~i~~~~~~l~~~~ 167 (210)
+|++++.+.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999998887654
No 194
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=6.8e-19 Score=146.07 Aligned_cols=158 Identities=24% Similarity=0.131 Sum_probs=105.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh----------hh-hh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----------RS-IT 72 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~-~~ 72 (210)
..++|+++|.+|+|||||+++|++..... ...+..+.+.....+..++ ..+.+|||||.... .. ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 46899999999999999999999765322 2222223333333344444 45779999995321 11 12
Q ss_pred HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEE
Q 028303 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLE 147 (210)
Q Consensus 73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~ 147 (210)
..+++.+|++++|+|++++.+..+.. +...+.. .+.|+++++||+|+.+... .++...... ...+++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence 24678999999999999886655543 2223322 3689999999999863221 122222111 12478999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 028303 148 ASARTAQNVEEAFIKTAAKILQN 170 (210)
Q Consensus 148 ~sa~~~~~i~~~~~~l~~~~~~~ 170 (210)
+||+++.|++++++.+.+.....
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988766543
No 195
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=5.7e-19 Score=149.52 Aligned_cols=159 Identities=20% Similarity=0.184 Sum_probs=105.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC----------------CEEEEEEEEecCCcchhh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID----------------GRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~ 69 (210)
..-|+++|++++|||||+++|.+..+........+.+.....+..+ .....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3569999999999999999999887655433322222121111111 011138899999999999
Q ss_pred hhhHHhhccccEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC------------CHHHH
Q 028303 70 SITRSYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV------------SKEEG 134 (210)
Q Consensus 70 ~~~~~~~~~~d~~i~V~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------------~~~~~ 134 (210)
.++..+++.+|++++|+|++++ .++..+. .+.. .++|+++++||+|+...... ..+.+
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 9999999999999999999973 3333332 2222 37899999999998632100 00000
Q ss_pred ------------HHHHH------------H--cCCeEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303 135 ------------EQFAK------------E--NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (210)
Q Consensus 135 ------------~~~~~------------~--~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 171 (210)
.++.. . ..++++++||++|+|+++++++|.......+
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l 219 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYL 219 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHh
Confidence 01111 0 1367999999999999999998876655434
No 196
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.82 E-value=1.8e-19 Score=148.95 Aligned_cols=158 Identities=20% Similarity=0.138 Sum_probs=105.0
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCceeEEEEEEEEEC
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMVTID 51 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 51 (210)
|+..+.++|+++|++++|||||+++|+...-.-. .....+.+.......+.
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~ 80 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE 80 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence 6788899999999999999999999984321100 00022344444444455
Q ss_pred CEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--
Q 028303 52 GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-- 128 (210)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-- 128 (210)
...+.+.+|||||++.+.......+..+|++++|+|+++...+ .....++..+... . ..|+++++||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHH
Confidence 5567899999999988877666667899999999999872111 1112222222222 1 246899999999864221
Q ss_pred --CCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHHH
Q 028303 129 --VSKEEGEQFAKENG-----LLFLEASARTAQNVEEAF 160 (210)
Q Consensus 129 --~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~ 160 (210)
...+++.+++...+ ++++++||++|.|+++..
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 11234555555544 569999999999998754
No 197
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.82 E-value=3.8e-22 Score=141.02 Aligned_cols=171 Identities=36% Similarity=0.645 Sum_probs=144.8
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEE-EEEEEEecCCcchhhhhhHHhhccccE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP-IKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
.+..++++|+|.-|+|||+++.+++...+..++..+++.++......++... +++.|||..|++.+..+...+++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 3567899999999999999999999999988999998888887777776554 488999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCCCCCCC-HHHHHHHHHHcCCe-EEEEecCCCCC
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVS-KEEGEQFAKENGLL-FLEASARTAQN 155 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~-~~~~sa~~~~~ 155 (210)
.++|||+++..+|+....|.+.+..... ..+|+++..||+|........ .....++.+++++. .+++|++.+.+
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 9999999999999999999988855432 457889999999986533222 35677788888865 99999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 028303 156 VEEAFIKTAAKILQNIQE 173 (210)
Q Consensus 156 i~~~~~~l~~~~~~~~~~ 173 (210)
++|+...+++.++..-.+
T Consensus 182 i~Ea~r~lVe~~lvnd~q 199 (229)
T KOG4423|consen 182 IPEAQRELVEKILVNDEQ 199 (229)
T ss_pred hhHHHHHHHHHHHhhccC
Confidence 999999999888765533
No 198
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=1e-18 Score=126.33 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch----------hhhhhHHhhc
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----------FRSITRSYYR 77 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~ 77 (210)
.|+++|++|+|||||++.+.+..+.....++.+.+.....+..+. .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 379999999999999999997665555555555555444444443 788999999432 3334444443
Q ss_pred ---cccEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHH--HcCCeEEEE
Q 028303 78 ---GAAGALLVYDITRRETF--NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAK--ENGLLFLEA 148 (210)
Q Consensus 78 ---~~d~~i~V~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~ 148 (210)
..+++++++|..+..+. ..+..|+.. .+.|+++++||+|+...... ........+. ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 45789999999875322 222233322 15899999999998532211 1112222222 234679999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 028303 149 SARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 149 sa~~~~~i~~~~~~l~~~ 166 (210)
|++++.++.++++.|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998875
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=1.8e-18 Score=150.74 Aligned_cols=159 Identities=23% Similarity=0.201 Sum_probs=108.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcc----------hhhhh-h
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----------SFRSI-T 72 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~-~ 72 (210)
..++|+++|.+|+|||||+++|++..... ...+..+.+.....+.+++.. +.+|||||.. .+..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 35899999999999999999999886422 222333444444445666654 5699999953 22222 2
Q ss_pred HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-H----cCCeEEE
Q 028303 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-E----NGLLFLE 147 (210)
Q Consensus 73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~ 147 (210)
...++.+|++++|+|++++.+...... +..+.. .+.|+++|+||+|+.+... .+....... . ...++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 345788999999999999877766543 333322 3789999999999864221 122222222 1 1356789
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHH
Q 028303 148 ASARTAQNVEEAFIKTAAKILQNI 171 (210)
Q Consensus 148 ~sa~~~~~i~~~~~~l~~~~~~~~ 171 (210)
+||+++.|++++++.+.+.+....
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999988876543
No 200
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=2.1e-18 Score=146.54 Aligned_cols=163 Identities=18% Similarity=0.151 Sum_probs=114.4
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC--CCCCC------------CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (210)
..-+|+++|+.++|||||+++|+.. .+... ...+.+.++......+....+.+++|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 4579999999999999999999963 22221 112445666666666666778999999999999999
Q ss_pred hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-CCHHHHHHHHHH-------cC
Q 028303 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAKE-------NG 142 (210)
Q Consensus 71 ~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~ 142 (210)
.+..+++.+|++++|+|+.++... ....++..+.. .++|.++++||+|+.+... ...+++..++.. ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 999999999999999999886432 22333333333 3789999999999865322 223344444422 34
Q ss_pred CeEEEEecCCCCC----------HHHHHHHHHHHHHHHHhhcc
Q 028303 143 LLFLEASARTAQN----------VEEAFIKTAAKILQNIQEGA 175 (210)
Q Consensus 143 ~~~~~~sa~~~~~----------i~~~~~~l~~~~~~~~~~~~ 175 (210)
++++.+|+++|.+ +..+++. +....|...
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~----Ii~~iP~P~ 198 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQA----IVDHVPAPD 198 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHH----HHHhCCCCC
Confidence 6799999999984 5555554 445555543
No 201
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.81 E-value=5.5e-18 Score=129.15 Aligned_cols=151 Identities=25% Similarity=0.221 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh-------hhhHHhhcccc
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------SITRSYYRGAA 80 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d 80 (210)
+|+++|++|+|||||+++|++........+..+.+.....+.+++ ..+++||+||..... ......++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998764332222223444444455554 568899999974322 23345788999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHHH-----------------------------------------H-------------
Q 028303 81 GALLVYDITRRE-TFNHLSSWLEDA-----------------------------------------R------------- 105 (210)
Q Consensus 81 ~~i~V~d~~~~~-s~~~~~~~~~~~-----------------------------------------~------------- 105 (210)
++++|+|++++. ....+...+... .
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998755 232222222100 0
Q ss_pred -----------hhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 106 -----------QHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 106 -----------~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
......+|+++|+||+|+. ..+++..++.. ..++++||+++.|++++++.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0001236999999999974 34455555443 4589999999999999999987754
No 202
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.81 E-value=7e-19 Score=149.51 Aligned_cols=156 Identities=21% Similarity=0.223 Sum_probs=110.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC--CCCCCC------------CCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhH
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK--RFQPVH------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR 73 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 73 (210)
+|+++|+.++|||||+++|+.. .+.... ....+.+.......+....+++.+|||||+..|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999863 221110 11224444444444445567899999999999999999
Q ss_pred HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-CCHHHHHHHHH-------HcCCeE
Q 028303 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAK-------ENGLLF 145 (210)
Q Consensus 74 ~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~~ 145 (210)
.+++.+|++++|+|+.++. ......|+..+... ++|+++|+||+|+.+... ...+++..++. ...+++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 9999999999999998743 33445565555443 689999999999865332 11234444443 235679
Q ss_pred EEEecCCCC----------CHHHHHHHHHHHH
Q 028303 146 LEASARTAQ----------NVEEAFIKTAAKI 167 (210)
Q Consensus 146 ~~~sa~~~~----------~i~~~~~~l~~~~ 167 (210)
+.+||+++. ++..+|+.|++.+
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 999999996 6877777766554
No 203
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.81 E-value=7.1e-19 Score=145.36 Aligned_cols=155 Identities=19% Similarity=0.139 Sum_probs=103.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCC--CCCC---------------------------CCCCceeEEEEEEEEECCEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV---------------------------HDLTIGVEFGARMVTIDGRP 54 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 54 (210)
...++|+++|+.++|||||+.+|+... .... .....+.+.......+....
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 467999999999999999999998521 1100 00111333333344455556
Q ss_pred EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHH--HHHHHHHHhhcCCCCeEEEEEecCCCCCCCC----
Q 028303 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL--SSWLEDARQHANPNMSIMLVGNKCDLAHRRA---- 128 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---- 128 (210)
+.+.+|||||++.|.......+..+|++++|+|++++++.... ..++... ... ...|+++++||+|+.+...
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~-~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTL-GINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHc-CCCeEEEEEEChhccCccHHHHH
Confidence 7899999999998877777778899999999999987533111 1112222 222 1357899999999964222
Q ss_pred CCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHHH
Q 028303 129 VSKEEGEQFAKENG-----LLFLEASARTAQNVEEAF 160 (210)
Q Consensus 129 ~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~ 160 (210)
...+++..++...+ ++++++||+++.|+.+.+
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 11245556666554 579999999999998744
No 204
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.80 E-value=6.7e-19 Score=132.22 Aligned_cols=149 Identities=19% Similarity=0.134 Sum_probs=94.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCC--------------------------C---CCceeEEEEEEEEECCEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------------------D---LTIGVEFGARMVTIDGRPIKLQ 58 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~--------------------------~---~~~~~~~~~~~~~~~~~~~~~~ 58 (210)
+|+++|++++|||||+++|+...-.... . ...+.+.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999754321110 0 0012222222233333445788
Q ss_pred EEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC----CHHHH
Q 028303 59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV----SKEEG 134 (210)
Q Consensus 59 i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~ 134 (210)
+|||||++.+.......++.+|++++|+|++++..... ...+..+.... ..++|+|+||+|+.+.... ...++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~~--~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLLG--IRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHcC--CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 99999998887767777899999999999987642222 12222222221 2357788999998642211 12234
Q ss_pred HHHHHHcC---CeEEEEecCCCCCHHHH
Q 028303 135 EQFAKENG---LLFLEASARTAQNVEEA 159 (210)
Q Consensus 135 ~~~~~~~~---~~~~~~sa~~~~~i~~~ 159 (210)
..++...+ .+++++||+++.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 44555555 45899999999998753
No 205
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.80 E-value=1.3e-18 Score=142.81 Aligned_cols=162 Identities=19% Similarity=0.168 Sum_probs=105.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCC---CCC--CCceeEEEEEE------------EEE----CC------EEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP---VHD--LTIGVEFGARM------------VTI----DG------RPIK 56 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~--~~~~~~~~~~~------------~~~----~~------~~~~ 56 (210)
+..++|+++|+.++|||||+++|.+..... +.. .|....+.... +.. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 457899999999999999999997542211 111 11111110000 001 11 1357
Q ss_pred EEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHH
Q 028303 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEG 134 (210)
Q Consensus 57 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~ 134 (210)
+.+||+||++.|...+......+|++++|+|++++.........+..+.... ..|+++++||+|+.+.... ..+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 8999999999999888888889999999999997531122222333332221 2478999999998653211 12344
Q ss_pred HHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 135 EQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 135 ~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
..+.... +++++++||++++|++++++.|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 4444432 57899999999999999999988754
No 206
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.80 E-value=4.8e-18 Score=125.99 Aligned_cols=148 Identities=18% Similarity=0.147 Sum_probs=99.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCC------C--------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ------P--------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (210)
.++|+++|+.++|||||+++|+..... . ......+.+.......+.....++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 589999999999999999999864100 0 00012244444444555555667889999999988888
Q ss_pred hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCC---CHHHHHHHHHHc-----C
Q 028303 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV---SKEEGEQFAKEN-----G 142 (210)
Q Consensus 72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-----~ 142 (210)
....+..+|++++|+|+..+.... ....+..+... ++| +|+++||+|+...... ..+++..++... .
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 888889999999999998753322 22333333332 566 7789999998532211 112344555443 3
Q ss_pred CeEEEEecCCCCCHH
Q 028303 143 LLFLEASARTAQNVE 157 (210)
Q Consensus 143 ~~~~~~sa~~~~~i~ 157 (210)
++++++||++|.++.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 679999999998853
No 207
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.80 E-value=1.5e-18 Score=142.32 Aligned_cols=162 Identities=19% Similarity=0.186 Sum_probs=103.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCCceeEEEE--EEE------------E----EC--C----EEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDLTIGVEFGA--RMV------------T----ID--G----RPIK 56 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~--~~~------------~----~~--~----~~~~ 56 (210)
++.++|+++|+.++|||||+.+|.+.-.. .+.....+..... ..+ . ++ + ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 56799999999999999999999653111 1111111111111 000 0 01 0 1257
Q ss_pred EEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHH
Q 028303 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEG 134 (210)
Q Consensus 57 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~ 134 (210)
+.+|||||++.+..........+|++++|+|++++.........+..+.... ..|+++|+||+|+.+.... ..+++
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~~~~i 164 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIG--IKNIVIVQNKIDLVSKERALENYEQI 164 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEEeeccccchhHHHHHHHH
Confidence 8999999999887766666778899999999996531111112222222221 2368999999998653221 12344
Q ss_pred HHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 135 EQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 135 ~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
..++... ..+++++||+++.|++++++.|...+
T Consensus 165 ~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 165 KEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 4444432 47899999999999999999987765
No 208
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.80 E-value=6.3e-18 Score=143.63 Aligned_cols=160 Identities=22% Similarity=0.243 Sum_probs=104.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC------CEE-----E-----EEEEEecCCcchh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID------GRP-----I-----KLQIWDTAGQESF 68 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----~-----~~~i~D~~G~~~~ 68 (210)
+...|+++|++++|||||+++|.+...........+.+........+ +.. . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 44679999999999999999998775544333322222221111111 111 1 2689999999999
Q ss_pred hhhhHHhhccccEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC----C--------HH-
Q 028303 69 RSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV----S--------KE- 132 (210)
Q Consensus 69 ~~~~~~~~~~~d~~i~V~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~--------~~- 132 (210)
..++...+..+|++++|+|+++ +.++..+. .+.. .++|+++++||+|+...... . ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9998888899999999999997 44444332 2222 37899999999998521100 0 00
Q ss_pred ----------HHHHHHHH---------------cCCeEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303 133 ----------EGEQFAKE---------------NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (210)
Q Consensus 133 ----------~~~~~~~~---------------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 171 (210)
+....+.. ..++++++||+++.|++++++.+...+...+
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l 221 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYL 221 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHH
Confidence 01111111 1357899999999999999998876554433
No 209
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.79 E-value=5.9e-18 Score=144.52 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
-|+++|+.++|||||+++|++.. +.++.....+.+.....+...+ ...+.+|||||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 58999999999999999999642 3333333334444333333322 2357899999999998878888899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCC--CHHHHHHHHHHcC---CeEEEEecCCCCCHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV--SKEEGEQFAKENG---LLFLEASARTAQNVEE 158 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~sa~~~~~i~~ 158 (210)
|+|++++..- .....+..+... ++| +++|+||+|+.+.... ..+++.+++...+ .+++++|++++.|+++
T Consensus 81 VVda~eg~~~-qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGVMA-QTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 9999874221 112222222222 455 5799999998643211 1234455554443 6799999999999999
Q ss_pred HHHHHHHHHH
Q 028303 159 AFIKTAAKIL 168 (210)
Q Consensus 159 ~~~~l~~~~~ 168 (210)
+++.|.+...
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999876543
No 210
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.79 E-value=1.6e-18 Score=117.44 Aligned_cols=156 Identities=22% Similarity=0.328 Sum_probs=115.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+++|-.++|||||++.|.+... .+-.+|.+ +....+..++ .+.+++||.+|+...+..|.+|+.++|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence 4579999999999999999999986543 22333333 4444444444 678999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVE 157 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~ 157 (210)
||+|.++.--++++...+..+....+ ..+|+.+..||.|+.... ..+++..-++. ....+.++|+..++++.
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa--~~eeia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA--KVEEIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc--chHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 99999998888888777766655544 679999999999985422 22222221111 12346799999999998
Q ss_pred HHHHHHHH
Q 028303 158 EAFIKTAA 165 (210)
Q Consensus 158 ~~~~~l~~ 165 (210)
+-.+++..
T Consensus 169 dg~~wv~s 176 (185)
T KOG0074|consen 169 DGSDWVQS 176 (185)
T ss_pred Ccchhhhc
Confidence 88877654
No 211
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=7.4e-18 Score=135.33 Aligned_cols=162 Identities=25% Similarity=0.178 Sum_probs=111.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-ceeEEEEEEEEECCEEEEEEEEecCCcc----------hhhh-hh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-IGVEFGARMVTIDGRPIKLQIWDTAGQE----------SFRS-IT 72 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~-~~ 72 (210)
..++|+++|.|++|||||+|+|++....-..... ++.+.....+..++. .+.++||+|-. .|.. -.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999999988764443332 233333333444554 46799999932 2222 23
Q ss_pred HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEE
Q 028303 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLE 147 (210)
Q Consensus 73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~ 147 (210)
...+..+|++++|+|++.+.+.++.+-. ..+. +.+.++++++||+|+.+......++.+..... ..+++++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia-~~i~---~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIA-GLIE---EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHH-HHHH---HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 4467889999999999998765554322 1122 23789999999999876544444444433332 2467999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHh
Q 028303 148 ASARTAQNVEEAFIKTAAKILQNIQ 172 (210)
Q Consensus 148 ~sa~~~~~i~~~~~~l~~~~~~~~~ 172 (210)
+||+++.++.++|+.+.+.......
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~ 355 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATR 355 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhcc
Confidence 9999999999999987766554443
No 212
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=1.3e-17 Score=127.25 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=82.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCC----------------CCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (210)
+|+++|+.|+|||||+++|+...-.... ....+.+.......+.....++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999864211000 011223333333444445678999999999999988
Q ss_pred hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
+..+++.+|++++|+|+.++... ....++..+... ++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence 99999999999999999986543 334455544433 789999999999853
No 213
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.78 E-value=7.3e-18 Score=116.99 Aligned_cols=135 Identities=23% Similarity=0.270 Sum_probs=96.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc----chhhhhhHHhhccccEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----ESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~i 83 (210)
||+|+|+.|||||||+++|.+... .+..|....+ .+ .++||||. ..+.........++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~-------~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY-------YD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe-------cc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999998654 3333422221 11 25899993 334444555567999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe-EEEEecCCCCCHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIK 162 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~ 162 (210)
+|.|++++.+.-. ..+... -..|+|=|+||+|+... ....+.++++++.-++. +|++|+.+++|++++.++
T Consensus 69 ll~dat~~~~~~p-P~fa~~------f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-PGFASM------FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-chhhcc------cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998643111 011111 15799999999999732 34567788888887765 899999999999999998
Q ss_pred HH
Q 028303 163 TA 164 (210)
Q Consensus 163 l~ 164 (210)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 214
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=8.1e-18 Score=135.46 Aligned_cols=153 Identities=23% Similarity=0.248 Sum_probs=108.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CceeEEEEEEEEECCEEEEEEEEecCCcchhhh--------hhHHhh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYY 76 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~ 76 (210)
-++++++|.||+|||||+|.|.+....-.... .++.+.-...+.++| +.+.+.||+|..+... .....+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 47999999999999999999999877664443 334445555566666 5578999999654333 234567
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (210)
Q Consensus 77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 156 (210)
.++|.++||+|++.+.+-.+...+ . ....+.|+++|.||.|+........ . ....+.+++.+|+++++|+
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~~-~----~~~~~~~~i~v~NK~DL~~~~~~~~--~---~~~~~~~~i~iSa~t~~Gl 364 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLALI-E----LLPKKKPIIVVLNKADLVSKIELES--E---KLANGDAIISISAKTGEGL 364 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHHH-H----hcccCCCEEEEEechhcccccccch--h---hccCCCceEEEEecCccCH
Confidence 899999999999986332222211 1 2234789999999999976443211 1 1122446899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028303 157 EEAFIKTAAKILQN 170 (210)
Q Consensus 157 ~~~~~~l~~~~~~~ 170 (210)
+.+.+.|.+.+...
T Consensus 365 ~~L~~~i~~~~~~~ 378 (454)
T COG0486 365 DALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999988877766
No 215
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=5.3e-19 Score=120.14 Aligned_cols=160 Identities=21% Similarity=0.307 Sum_probs=117.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
+...+|+++|--|+|||++.-++.-..... ..|+.+... ..+..+++.+++||.+|+......|..|+.+.|++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnv----e~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNV----ETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCc----cccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence 467899999999999999988876554432 233333332 234457889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHH-----HHHHcCCeEEEEecCCCCCHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQ-----FAKENGLLFLEASARTAQNVE 157 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~sa~~~~~i~ 157 (210)
||+|.+|.+...-....+..+... .-++..+++++||.|..... ...|+.. ..++.-..+++.||.+++|++
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 999999987665555444433333 23567888999999986422 2233222 223334679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028303 158 EAFIKTAAKILQN 170 (210)
Q Consensus 158 ~~~~~l~~~~~~~ 170 (210)
..++||.+.+.++
T Consensus 169 ~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 169 PAMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHHhcc
Confidence 9999998877543
No 216
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.77 E-value=6.5e-18 Score=127.39 Aligned_cols=113 Identities=24% Similarity=0.313 Sum_probs=79.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------C------CCceeEEEEEEEE--E---CCEEEEEEEEecCCc
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------D------LTIGVEFGARMVT--I---DGRPIKLQIWDTAGQ 65 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~------~~~~~~~~~~~~~--~---~~~~~~~~i~D~~G~ 65 (210)
+|+++|+.++|||||+++|+........ . ...+.+.....+. + ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999875433210 0 0112222222221 2 355688999999999
Q ss_pred chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (210)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (210)
..+......++..+|++++|+|+.+..+... ..++..+.. .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888889999999999999988765432 233333322 258999999999975
No 217
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.77 E-value=3.6e-18 Score=129.27 Aligned_cols=148 Identities=20% Similarity=0.171 Sum_probs=93.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC---------------------------C--CCCCCceeEEEEEEEEECCEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQ---------------------------P--VHDLTIGVEFGARMVTIDGRPIKLQ 58 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (210)
+|+++|+.++|||||+.+|+...-. . ......+.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999998632110 0 0001123333333344444557889
Q ss_pred EEecCCcchhhhhhHHhhccccEEEEEEECCChhh------HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC--CCCC
Q 028303 59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRET------FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR--RAVS 130 (210)
Q Consensus 59 i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~ 130 (210)
+|||||+..+...+...++.+|++++|+|++++.. .......+...... ...|+++++||+|+... ....
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence 99999998887777777889999999999998521 11122222222222 13689999999998632 1111
Q ss_pred H----HHHHHHHHHcC-----CeEEEEecCCCCCHH
Q 028303 131 K----EEGEQFAKENG-----LLFLEASARTAQNVE 157 (210)
Q Consensus 131 ~----~~~~~~~~~~~-----~~~~~~sa~~~~~i~ 157 (210)
. +++..++...+ ++++++||++|.|++
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 22333344433 569999999999986
No 218
>PRK12736 elongation factor Tu; Reviewed
Probab=99.76 E-value=3.1e-17 Score=134.16 Aligned_cols=147 Identities=18% Similarity=0.150 Sum_probs=97.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (210)
.+.++|+++|+.++|||||+++|++..... ......+.+.......+......+.+|||||+++|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 467999999999999999999998631100 000122344444445555555678899999999888
Q ss_pred hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCCC---HHHHHHHHHHcC---
Q 028303 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS---KEEGEQFAKENG--- 142 (210)
Q Consensus 70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~--- 142 (210)
......+..+|++++|+|+.++.... ...++..+... ++| +|+++||+|+.+..... .+++..++...+
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 165 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc
Confidence 87777788999999999998753222 22333333332 677 67889999986422211 124455555443
Q ss_pred --CeEEEEecCCCC
Q 028303 143 --LLFLEASARTAQ 154 (210)
Q Consensus 143 --~~~~~~sa~~~~ 154 (210)
++++++|++++.
T Consensus 166 ~~~~ii~vSa~~g~ 179 (394)
T PRK12736 166 DDIPVIRGSALKAL 179 (394)
T ss_pred CCccEEEeeccccc
Confidence 579999999973
No 219
>PRK12735 elongation factor Tu; Reviewed
Probab=99.75 E-value=4.6e-17 Score=133.21 Aligned_cols=159 Identities=16% Similarity=0.148 Sum_probs=103.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhC-------CCC-----C--CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDK-------RFQ-----P--VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~-------~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (210)
.+.++|+++|++++|||||+++|++. .+. . ......+.+.......+.....++.++||||++.|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 46799999999999999999999862 100 0 001122344444444454455678899999999888
Q ss_pred hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEecCCCCCCCCC---CHHHHHHHHHHcC---
Q 028303 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAV---SKEEGEQFAKENG--- 142 (210)
Q Consensus 70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~~--- 142 (210)
......+..+|++++|+|+.++... ....++..+.. .++|.+ +++||+|+.+.... ..+++..++...+
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~ 165 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 7777778899999999999875322 22233333332 267865 57999998642211 1124555555543
Q ss_pred --CeEEEEecCCCC----------CHHHHHHHHHHH
Q 028303 143 --LLFLEASARTAQ----------NVEEAFIKTAAK 166 (210)
Q Consensus 143 --~~~~~~sa~~~~----------~i~~~~~~l~~~ 166 (210)
++++++|+.++. ++..+++.|...
T Consensus 166 ~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 166 DDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred CceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 679999999985 455555555443
No 220
>COG2262 HflX GTPases [General function prediction only]
Probab=99.75 E-value=9.9e-17 Score=127.15 Aligned_cols=164 Identities=19% Similarity=0.088 Sum_probs=121.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc--------hhhhhhHHhh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE--------SFRSITRSYY 76 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~ 76 (210)
....|.++|.+++|||||+|+|++.........+.+.+.....+.+.+ ...+.+.||.|.- ..........
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 457899999999999999999998887766666666766666677765 3457789999942 1122233445
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (210)
Q Consensus 77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 156 (210)
..+|+++.|+|++++.....+..-...+........|+|+|.||+|+..... ....+....-..+.+||+++.|+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~gl 344 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGEGL 344 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCcCH
Confidence 6899999999999998878887777777776556799999999999754332 11111111114789999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 028303 157 EEAFIKTAAKILQNIQEG 174 (210)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~ 174 (210)
+.+.+.|.+.+.......
T Consensus 345 ~~L~~~i~~~l~~~~~~~ 362 (411)
T COG2262 345 DLLRERIIELLSGLRTEV 362 (411)
T ss_pred HHHHHHHHHHhhhcccce
Confidence 999999988887665443
No 221
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.74 E-value=7.4e-17 Score=132.02 Aligned_cols=148 Identities=18% Similarity=0.152 Sum_probs=98.2
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCC------CC--------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRF------QP--------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF 68 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (210)
..+.++|+++|+.++|||||+++|++... .. ......+.+.......++.....+.+|||||++.|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 35679999999999999999999974210 00 00011234444444555555667899999999988
Q ss_pred hhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEecCCCCCCCCCC---HHHHHHHHHHcC--
Q 028303 69 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVS---KEEGEQFAKENG-- 142 (210)
Q Consensus 69 ~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~-- 142 (210)
.......+..+|++++|+|+.++.... ....+..+... ++|.+ +++||+|+.+..... .++++.++...+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 877777778899999999998743222 22333333322 56765 689999986432211 234556666554
Q ss_pred ---CeEEEEecCCCC
Q 028303 143 ---LLFLEASARTAQ 154 (210)
Q Consensus 143 ---~~~~~~sa~~~~ 154 (210)
++++++|+.++.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 165 GDDTPIIRGSALKAL 179 (394)
T ss_pred ccCccEEECcccccc
Confidence 689999999874
No 222
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.1e-16 Score=134.13 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=114.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc------hhhhhhHHh-h-c
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE------SFRSITRSY-Y-R 77 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~~~~~~~~-~-~ 77 (210)
..+|+++|+||+|||||+|+|++....-..-+..+.+.....+...+.. +++.|.||-- .-+.....+ + .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 3569999999999999999999988766666666777777666666654 7899999922 112223333 3 4
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157 (210)
Q Consensus 78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 157 (210)
++|+++-|+|+++-+.--.+ ..++.+ -+.|+++++|++|..+++.+.. +.+++.+..++|+++++|+.|.|++
T Consensus 81 ~~D~ivnVvDAtnLeRnLyl---tlQLlE---~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYL---TLQLLE---LGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHHHHHH---HHHHHH---cCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCHH
Confidence 67999999999986531111 122222 3789999999999876554432 3567778889999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028303 158 EAFIKTAAKILQNI 171 (210)
Q Consensus 158 ~~~~~l~~~~~~~~ 171 (210)
++...+.+...+..
T Consensus 154 ~l~~~i~~~~~~~~ 167 (653)
T COG0370 154 ELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHhccccc
Confidence 99998876544443
No 223
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.73 E-value=1.8e-17 Score=135.78 Aligned_cols=163 Identities=26% Similarity=0.322 Sum_probs=120.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+|+|+.|+||||||-.|....+.+.-++......-+....- ..+..++.|++..+.-.......++++|++++
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtP--e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTP--ENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCc--CcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 5699999999999999999999999887765554332222222222 23447899998776666667788999999999
Q ss_pred EEECCChhhHHHHHH-HHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHH-HHHHHHHcC-Ce-EEEEecCCCCCHHH
Q 028303 85 VYDITRRETFNHLSS-WLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEE-GEQFAKENG-LL-FLEASARTAQNVEE 158 (210)
Q Consensus 85 V~d~~~~~s~~~~~~-~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~~-~~~~sa~~~~~i~~ 158 (210)
||+++++++.+.+.. |+..+++..+ .++|+|+|+||+|.......+.+. ...+...+. +. .++|||++..++.+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e 165 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE 165 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence 999999999999885 5555555543 679999999999997655554333 333333322 22 78999999999999
Q ss_pred HHHHHHHHHHH
Q 028303 159 AFIKTAAKILQ 169 (210)
Q Consensus 159 ~~~~l~~~~~~ 169 (210)
+|.+..+.++.
T Consensus 166 ~fYyaqKaVih 176 (625)
T KOG1707|consen 166 LFYYAQKAVIH 176 (625)
T ss_pred hhhhhhheeec
Confidence 99987776654
No 224
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=2.6e-16 Score=122.09 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=80.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCC---------C-----------CceeEEEEEEEEECCEEEEEEEEecCCcc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD---------L-----------TIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 66 (210)
-+|+++|++|+|||||+++|+...-..... . ..+.+.......+....+++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 369999999999999999997532111000 0 11333444444555666789999999999
Q ss_pred hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
.|.......++.+|++|+|+|++++... ....++..... .++|+++++||+|+.+
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 8888777888999999999999875432 22333333322 3789999999999865
No 225
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.73 E-value=3.5e-17 Score=123.51 Aligned_cols=163 Identities=19% Similarity=0.274 Sum_probs=101.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEecCCcchhhh-----hhHHhhccccE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRS-----ITRSYYRGAAG 81 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~ 81 (210)
||+++|+.+|||||+.+.+.+.-.+.+ ....+.+.......+ ....+.+.+||+||+..+.. .....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999998888776543222 222233333333333 23356899999999875544 35778899999
Q ss_pred EEEEEECCChhhHHHHHHHHH---HHHhhcCCCCeEEEEEecCCCCCCC--CCCH----HHHHHHHHHcC---CeEEEEe
Q 028303 82 ALLVYDITRRETFNHLSSWLE---DARQHANPNMSIMLVGNKCDLAHRR--AVSK----EEGEQFAKENG---LLFLEAS 149 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~---~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~----~~~~~~~~~~~---~~~~~~s 149 (210)
+|||+|+...+..+++..+.. .+... .+++.+.++++|+|+..+. .... +.+.+.+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999995444444444433 33333 3689999999999985321 1111 22333344445 7799999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhh
Q 028303 150 ARTAQNVEEAFIKTAAKILQNIQE 173 (210)
Q Consensus 150 a~~~~~i~~~~~~l~~~~~~~~~~ 173 (210)
..+ +.+-+.+..+++.+.+..+.
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~~~ 181 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNLST 181 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTHCC
T ss_pred CcC-cHHHHHHHHHHHHHcccHHH
Confidence 998 68888888888888766554
No 226
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.73 E-value=2.4e-16 Score=119.36 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc------------eeEEE--EEE----------------------EEEC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI------------GVEFG--ARM----------------------VTID 51 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~------------~~~~~--~~~----------------------~~~~ 51 (210)
||+++|+.++|||||+++|....+........ +.+.. ... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999999765533211100 00000 000 0011
Q ss_pred CEEEEEEEEecCCcchhhhhhHHhhc--cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303 52 GRPIKLQIWDTAGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (210)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (210)
.....+.++||||++.|.......+. .+|++++|+|+..+..-. ...++..+.. .++|+++|+||+|+.++...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA---LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence 22346889999999988775555554 789999999998764322 2233333333 26899999999998543211
Q ss_pred --CHHHHHHHHHH--------------------------cCCeEEEEecCCCCCHHHHHHHHHH
Q 028303 130 --SKEEGEQFAKE--------------------------NGLLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 130 --~~~~~~~~~~~--------------------------~~~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
..+++.+++.. ..+++|.+|+.+|+|++++...|..
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 11222223221 1247999999999999998877643
No 227
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=5e-16 Score=112.64 Aligned_cols=157 Identities=18% Similarity=0.206 Sum_probs=108.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC----------cchhhhhhH
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSITR 73 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~ 73 (210)
+...-|+++|.+++|||||||+|++++-..-...|.|.+.....+.+++. +.+.|.|| .+.+..+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 45578999999999999999999998755555666677888887877764 66999999 334445566
Q ss_pred Hhhcc---ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH----cCCe--
Q 028303 74 SYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE----NGLL-- 144 (210)
Q Consensus 74 ~~~~~---~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~-- 144 (210)
.|+.. -.++++++|+..+....+. .++..+.. .++|+++++||+|........ ......+.. ....
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~~ 173 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQW 173 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccce
Confidence 66653 3589999999887554332 22333333 389999999999976533322 111222222 1222
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Q 028303 145 FLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 145 ~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
++..|+..+.|++++...|.+.+.
T Consensus 174 ~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 174 VVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EEEEecccccCHHHHHHHHHHHhh
Confidence 778899999999998888877654
No 228
>CHL00071 tufA elongation factor Tu
Probab=99.72 E-value=3.9e-16 Score=128.24 Aligned_cols=149 Identities=16% Similarity=0.114 Sum_probs=99.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (210)
...++|+++|++++|||||+++|++..... ......+.+.......+.....++.++||||+..|.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 567999999999999999999998642110 001112444444444454455678899999999888
Q ss_pred hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCC---CHHHHHHHHHHcC---
Q 028303 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV---SKEEGEQFAKENG--- 142 (210)
Q Consensus 70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~--- 142 (210)
......+..+|++++|+|+..+..- .....+..+... ++| +|+++||+|+.+.... ..+++..++...+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~ 165 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG 165 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8778888899999999999875332 222333333322 678 7788999998643221 1124555555433
Q ss_pred --CeEEEEecCCCCCH
Q 028303 143 --LLFLEASARTAQNV 156 (210)
Q Consensus 143 --~~~~~~sa~~~~~i 156 (210)
++++++|+.++.++
T Consensus 166 ~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 166 DDIPIVSGSALLALEA 181 (409)
T ss_pred CcceEEEcchhhcccc
Confidence 67999999998753
No 229
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=5.7e-16 Score=126.51 Aligned_cols=159 Identities=20% Similarity=0.197 Sum_probs=119.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC-EEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
..+-|+++|+...|||||+..+-............+.+.....+..+. ..-.+.|+||||++.|..++..-..-+|.+|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 346789999999999999999999888777777777777777766652 2336889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEecCCCC
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG---------LLFLEASARTAQ 154 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~~~ 154 (210)
+|++++++---+.+ ..++.++ ..+.|+++.+||+|.++.. ......-..+++ ..++++||++|+
T Consensus 84 LVVa~dDGv~pQTi-EAI~hak---~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 84 LVVAADDGVMPQTI-EAINHAK---AAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEccCCcchhHH-HHHHHHH---HCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 99999985321111 1222333 3489999999999987432 233333333333 458999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 028303 155 NVEEAFIKTAAKILQN 170 (210)
Q Consensus 155 ~i~~~~~~l~~~~~~~ 170 (210)
|++++++.++-.....
T Consensus 157 Gi~eLL~~ill~aev~ 172 (509)
T COG0532 157 GIDELLELILLLAEVL 172 (509)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999987666555
No 230
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.72 E-value=2.7e-16 Score=120.58 Aligned_cols=156 Identities=18% Similarity=0.196 Sum_probs=110.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc----hhhhh---hHHhhccc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----SFRSI---TRSYYRGA 79 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~---~~~~~~~~ 79 (210)
..|.++|.|++|||||+++|...+-......+++......++.+++.. .+.+-|.||.- ....+ ....+..+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhh
Confidence 468899999999999999999876544444444555555555555433 48889999932 11122 23345688
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCC
Q 028303 80 AGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTA 153 (210)
Q Consensus 80 d~~i~V~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~ 153 (210)
+.++||+|++.+ ..++.+...+.++..+.+ .+.|.++|+||+|+++... ....+++....- .++++||+.+
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~---~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK---NLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH---HHHHHHHHHcCCCcEEEeeeccc
Confidence 999999999988 777777777666655544 5789999999999853221 113455555443 3899999999
Q ss_pred CCHHHHHHHHHHH
Q 028303 154 QNVEEAFIKTAAK 166 (210)
Q Consensus 154 ~~i~~~~~~l~~~ 166 (210)
+++.+++..|.+.
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 353 EGLEELLNGLREL 365 (366)
T ss_pred cchHHHHHHHhhc
Confidence 9999999887654
No 231
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.72 E-value=6.4e-16 Score=115.11 Aligned_cols=159 Identities=11% Similarity=0.064 Sum_probs=92.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcee---EEEEEEEEECCEEEEEEEEecCCcchhhhh-----hHHhhc
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV---EFGARMVTIDGRPIKLQIWDTAGQESFRSI-----TRSYYR 77 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~ 77 (210)
.++|+++|++|+|||||+|.|.+.........+.+. +.....+.... ...+.+|||||....... ....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 378999999999999999999986553322222121 11111111111 236889999997543222 222356
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-----------CCHHHHHHHHH----HcC
Q 028303 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-----------VSKEEGEQFAK----ENG 142 (210)
Q Consensus 78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~----~~~ 142 (210)
.+|++++|.+.. .. ..-..++..+... +.|+++|+||+|+..... ...++.++.+. ..+
T Consensus 80 ~~d~~l~v~~~~-~~--~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 80 EYDFFIIISSTR-FS--SNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CcCEEEEEeCCC-CC--HHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 789888885432 11 1122344444443 579999999999832111 11122222222 212
Q ss_pred ---CeEEEEecC--CCCCHHHHHHHHHHHHHHHH
Q 028303 143 ---LLFLEASAR--TAQNVEEAFIKTAAKILQNI 171 (210)
Q Consensus 143 ---~~~~~~sa~--~~~~i~~~~~~l~~~~~~~~ 171 (210)
-++|.+|+. .+.++..+.+.|+..+.+..
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 358999998 56888888888877776543
No 232
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.71 E-value=1.9e-16 Score=119.46 Aligned_cols=113 Identities=22% Similarity=0.210 Sum_probs=78.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC----------------CCCCceeEEEEEEEEEC--------CEEEEEEEEecC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPV----------------HDLTIGVEFGARMVTID--------GRPIKLQIWDTA 63 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 63 (210)
+|+++|+.++|||||+.+|+....... .....++......+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999975431100 00011111112222232 347789999999
Q ss_pred CcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (210)
Q Consensus 64 G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (210)
|++.|......+++.+|++++|+|+.++........ +..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEECCCcc
Confidence 999999999999999999999999998765443222 222222 368999999999975
No 233
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=5.3e-16 Score=119.71 Aligned_cols=159 Identities=21% Similarity=0.180 Sum_probs=109.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc-----chhhh----hhHHh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ-----ESFRS----ITRSY 75 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----~~~~~----~~~~~ 75 (210)
....|+|.|+||+|||||++.++..+......|+++-.....++.. +..+++++||||. ++.+. ...+.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~--~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER--GYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec--CCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 4578999999999999999999998876666666566665555443 4467899999992 11111 12222
Q ss_pred hccccEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCC
Q 028303 76 YRGAAGALLVYDITR--RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASART 152 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~ 152 (210)
-+-.++++|++|.+. +.+.+.-...+..+.... +.|+++|+||.|..+... .+++.......+. ....+++..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEEK--LEEIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchhH--HHHHHHHHHhhccccccceeeee
Confidence 334679999999986 455666667778887776 489999999999865333 2344444443333 366788888
Q ss_pred CCCHHHHHHHHHHHHHH
Q 028303 153 AQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 153 ~~~i~~~~~~l~~~~~~ 169 (210)
+.+.+.+-..+......
T Consensus 321 ~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 321 GCGLDKLREEVRKTALE 337 (346)
T ss_pred hhhHHHHHHHHHHHhhc
Confidence 88888777776665443
No 234
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.70 E-value=3.3e-16 Score=129.51 Aligned_cols=152 Identities=17% Similarity=0.146 Sum_probs=103.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCC---------------------------C--CCCCCceeEEEEEEEEECCEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ---------------------------P--VHDLTIGVEFGARMVTIDGRP 54 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~~~ 54 (210)
.+.++|+++|+.++|||||+.+|+...-. . ......+.+.......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 46799999999999999999988642110 0 000122344444445556666
Q ss_pred EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCC
Q 028303 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRR 127 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~ 127 (210)
..+.++|+||++.|.......+..+|++|+|+|+.++.- + ......+..+... ++| +|+++||+|+.+..
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~~~~ 161 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDATTPK 161 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCCchh
Confidence 789999999999999999999999999999999987421 0 2233333333322 564 68889999975211
Q ss_pred ------CCCHHHHHHHHHHcC-----CeEEEEecCCCCCHHH
Q 028303 128 ------AVSKEEGEQFAKENG-----LLFLEASARTAQNVEE 158 (210)
Q Consensus 128 ------~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~ 158 (210)
....+++..++...+ ++++++|+.+|+|+.+
T Consensus 162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 111345666666655 6799999999999854
No 235
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.70 E-value=2e-16 Score=122.86 Aligned_cols=114 Identities=19% Similarity=0.152 Sum_probs=78.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-----C-----------CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQP-----V-----------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (210)
+|+++|++++|||||+++|+...-.. . .....+.+.......+.....++.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999997421100 0 0011123333333333334567889999999988888
Q ss_pred hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
+...++.+|++++|+|+.++..... ...+..+.. .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 9999999999999999987543222 233333332 3689999999999864
No 236
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.70 E-value=4.4e-16 Score=129.75 Aligned_cols=153 Identities=20% Similarity=0.152 Sum_probs=97.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC------------CC-------------------CceeEEEEEEEEECC
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------------DL-------------------TIGVEFGARMVTIDG 52 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------~~-------------------~~~~~~~~~~~~~~~ 52 (210)
...++|+++|+.++|||||+.+|+...-.... .. ..+.+.......+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 45699999999999999999999754211100 00 112223333333444
Q ss_pred EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028303 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 132 (210)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 132 (210)
...++.+|||||++.|.......+..+|++++|+|+..+..-..... +..+.... ..|+|+++||+|+.+......+
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~l~~~lg--~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SFIATLLG--IKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HHHHHHhC--CCceEEEEEeeccccchhHHHH
Confidence 45678899999999887766667799999999999987532211111 11222221 2478899999998643222222
Q ss_pred HHH----HHHHHc----CCeEEEEecCCCCCHHHH
Q 028303 133 EGE----QFAKEN----GLLFLEASARTAQNVEEA 159 (210)
Q Consensus 133 ~~~----~~~~~~----~~~~~~~sa~~~~~i~~~ 159 (210)
++. .+.... .++++++|++++.|+++.
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 222 223332 367999999999999864
No 237
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.70 E-value=5.8e-16 Score=120.72 Aligned_cols=143 Identities=17% Similarity=0.250 Sum_probs=92.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh----
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---- 70 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---- 70 (210)
..++|+|+|.+|+|||||+|+|++..+... ...+.........+..++..+.+.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 368999999999999999999998876544 233444555555566678788999999999432211
Q ss_pred ----------------------hhHHhhc--cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303 71 ----------------------ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (210)
Q Consensus 71 ----------------------~~~~~~~--~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (210)
.+...+. .+|+++|+++.+... +.... +..+.... .++|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D--~~~lk~l~-~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLD--IEFMKRLS-KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHH--HHHHHHHh-ccCCEEEEEECCCcCCH
Confidence 0101222 467888888876421 11110 22222222 26899999999998542
Q ss_pred --CCCCHHHHHHHHHHcCCeEEEEecC
Q 028303 127 --RAVSKEEGEQFAKENGLLFLEASAR 151 (210)
Q Consensus 127 --~~~~~~~~~~~~~~~~~~~~~~sa~ 151 (210)
.....+.+.+.+..+++++|.....
T Consensus 159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 2233455667788889998876553
No 238
>PLN03126 Elongation factor Tu; Provisional
Probab=99.70 E-value=1.2e-15 Score=126.78 Aligned_cols=148 Identities=16% Similarity=0.105 Sum_probs=98.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCC------CCC--------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR------FQP--------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (210)
.+.++|+++|+.++|||||+++|+... ... ......+.+.......++.....+.++|+||++.|.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 457999999999999999999998521 100 011122344443333444445578899999999998
Q ss_pred hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCC---CHHHHHHHHHHc----
Q 028303 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV---SKEEGEQFAKEN---- 141 (210)
Q Consensus 70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~---- 141 (210)
......+..+|++++|+|+.++.... ...++..+... ++| +|+++||+|+.+.... ..+++..++...
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~ 234 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG 234 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 88888888999999999999764322 23334433333 677 7789999998642211 112444555543
Q ss_pred -CCeEEEEecCCCCC
Q 028303 142 -GLLFLEASARTAQN 155 (210)
Q Consensus 142 -~~~~~~~sa~~~~~ 155 (210)
.++++++|+.++.+
T Consensus 235 ~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 235 DDIPIISGSALLALE 249 (478)
T ss_pred CcceEEEEEcccccc
Confidence 46799999988754
No 239
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.69 E-value=1.1e-15 Score=116.61 Aligned_cols=162 Identities=20% Similarity=0.188 Sum_probs=107.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh------------hh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------------SI 71 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------------~~ 71 (210)
.+..+|+|+|+|++|||||.|.+.+.+..+......+++....-+... ...++.++||||--.-. ..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 467899999999999999999999999988887776666655544333 45689999999921100 11
Q ss_pred hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-------------CC--HHHHH-
Q 028303 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-------------VS--KEEGE- 135 (210)
Q Consensus 72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~--~~~~~- 135 (210)
....+..+|.+++|+|+++....-+ ...+..+..+. .+|-|+|.||.|.....- .+ .-+.+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 2234567899999999996322111 12333444443 689999999999743211 11 11111
Q ss_pred HHHHHc---------CC----eEEEEecCCCCCHHHHHHHHHHHHHH
Q 028303 136 QFAKEN---------GL----LFLEASARTAQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 136 ~~~~~~---------~~----~~~~~sa~~~~~i~~~~~~l~~~~~~ 169 (210)
.+.... +. .+|.+||+.|+|++++-++|+..+..
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 111111 01 28999999999999999988766543
No 240
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.69 E-value=5.7e-16 Score=127.12 Aligned_cols=149 Identities=21% Similarity=0.181 Sum_probs=94.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCC-------------------------------CCCceeEEEEEEEEECCEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH-------------------------------DLTIGVEFGARMVTIDGRPI 55 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 55 (210)
++|+++|+.++|||||+.+|+...-.... ....+.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999999643211000 00112223333333434455
Q ss_pred EEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH---
Q 028303 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE--- 132 (210)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~--- 132 (210)
++.+|||||++.|.......+..+|++++|+|+..+...... ..+..+.... ..++++++||+|+.+......+
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence 788999999999887777788999999999999875432222 1222222221 2368889999998643221112
Q ss_pred -HHHHHHHHcC---CeEEEEecCCCCCHHH
Q 028303 133 -EGEQFAKENG---LLFLEASARTAQNVEE 158 (210)
Q Consensus 133 -~~~~~~~~~~---~~~~~~sa~~~~~i~~ 158 (210)
+...+....+ ++++++||++|+|+++
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 2233334333 4699999999999885
No 241
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=1.7e-16 Score=123.65 Aligned_cols=115 Identities=21% Similarity=0.236 Sum_probs=77.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-----C-----------ceeEEEEEEEEECCEEEEEEEEecCCcchhhhh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----T-----------IGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (210)
+|+++|++|+|||||+++|+.......... + .+.+.......+....+.+.+|||||...+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 589999999999999999975432111000 0 011111112222223467889999999888888
Q ss_pred hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (210)
Q Consensus 72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (210)
+..+++.+|++++|+|++++........| ..+.. .++|.++++||+|....
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC
Confidence 88899999999999999986544333222 23332 36899999999998653
No 242
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.69 E-value=1e-15 Score=126.71 Aligned_cols=152 Identities=18% Similarity=0.141 Sum_probs=101.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCC--CC---------------------------CCCCCceeEEEEEEEEECCEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF--QP---------------------------VHDLTIGVEFGARMVTIDGRP 54 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (210)
.+.++|+++|+.++|||||+.+|+...- .. ......+.+.......+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 5679999999999999999999875210 00 000112344444445556666
Q ss_pred EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCe-EEEEEecCCCCC--
Q 028303 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLSSWLEDARQHANPNMS-IMLVGNKCDLAH-- 125 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~-- 125 (210)
..+.|+||||+..|.......+..+|++++|+|+..+.. + ......+..+... ++| +|+++||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTVN 161 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccch
Confidence 789999999999998888888999999999999987531 0 1233333333333 566 678999999532
Q ss_pred CCCCC----HHHHHHHHHHc-----CCeEEEEecCCCCCHHH
Q 028303 126 RRAVS----KEEGEQFAKEN-----GLLFLEASARTAQNVEE 158 (210)
Q Consensus 126 ~~~~~----~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~ 158 (210)
..+.. .+++..++... .++++++|+.+|+|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11111 23344444433 36799999999999864
No 243
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.69 E-value=1.2e-15 Score=128.35 Aligned_cols=116 Identities=20% Similarity=0.182 Sum_probs=81.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCceeEEEEEEEEECCEEEEEEEEecCC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 64 (210)
..-+|+++|++++|||||+++|+...-... .....+.++......+....+.+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 446999999999999999999974211000 001123334444444455567899999999
Q ss_pred cchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (210)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (210)
+..|......+++.+|++|+|+|++++... ....++..... .++|+++++||+|+.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 999988788889999999999999875422 23334433332 379999999999974
No 244
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.68 E-value=6.4e-16 Score=127.65 Aligned_cols=163 Identities=17% Similarity=0.142 Sum_probs=103.8
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCC---CCCCCC--CceeEEEEEE-------------EEECC------------
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRF---QPVHDL--TIGVEFGARM-------------VTIDG------------ 52 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~-------------~~~~~------------ 52 (210)
.+..++|+++|+...|||||+.+|++... .++... |...-+.... ...+.
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 36779999999999999999999996432 111111 1111111000 00000
Q ss_pred ----EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303 53 ----RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (210)
Q Consensus 53 ----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (210)
....+.++|+||++.|.......+..+|++++|+|+.++..-......+..+.... -.|+|+++||+|+.+...
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHHH
Confidence 02368899999999998888888889999999999997421122223333222221 236889999999864221
Q ss_pred --CCHHHHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 129 --VSKEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 129 --~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
...++++++... ...+++++||+++.|++.+++.|.+.+
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 112333343332 357899999999999999888887644
No 245
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=5.2e-16 Score=126.46 Aligned_cols=160 Identities=21% Similarity=0.237 Sum_probs=115.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC-------------CCCceeEEEEEE--E-EECCEEEEEEEEecCCcch
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-------------DLTIGVEFGARM--V-TIDGRPIKLQIWDTAGQES 67 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-------------~~~~~~~~~~~~--~-~~~~~~~~~~i~D~~G~~~ 67 (210)
++.-++.++.+...|||||..+|+...-.... ....+++....+ + ..++..+.++++||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 45568899999999999999999754221000 011123332222 2 2236668999999999999
Q ss_pred hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-CCHHHHHHHHHHcCCeEE
Q 028303 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAKENGLLFL 146 (210)
Q Consensus 68 ~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~ 146 (210)
|.......+..||++++|+|+..+..-+.+..++..+.. +..+|.|+||+|++..+. .-..+..+.+.....+++
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence 999999999999999999999998776666666655543 688999999999976432 122344555555566799
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 028303 147 EASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 147 ~~sa~~~~~i~~~~~~l~~~~ 167 (210)
.+||++|.++.++|+.|++.+
T Consensus 214 ~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred EEEeccCccHHHHHHHHHhhC
Confidence 999999999999777766654
No 246
>PRK00049 elongation factor Tu; Reviewed
Probab=99.68 E-value=2.8e-15 Score=122.69 Aligned_cols=147 Identities=17% Similarity=0.157 Sum_probs=97.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCC------C--------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ------P--------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (210)
.+.++|+++|+.++|||||+++|++.... . ......+.+.......+.....++.++||||+..|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 46799999999999999999999863110 0 001122444444445554455678899999998888
Q ss_pred hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEecCCCCCCCCC---CHHHHHHHHHHc----
Q 028303 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAV---SKEEGEQFAKEN---- 141 (210)
Q Consensus 70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~---- 141 (210)
......+..+|++++|+|+.++... ....++..+... ++|.+ +++||+|+.+.... ...++..++...
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 7777788999999999999875332 223333333332 67876 57999998642211 112344444443
Q ss_pred -CCeEEEEecCCCC
Q 028303 142 -GLLFLEASARTAQ 154 (210)
Q Consensus 142 -~~~~~~~sa~~~~ 154 (210)
.++++++|+.++.
T Consensus 166 ~~~~iv~iSa~~g~ 179 (396)
T PRK00049 166 DDTPIIRGSALKAL 179 (396)
T ss_pred cCCcEEEeeccccc
Confidence 3679999999875
No 247
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.67 E-value=5.7e-15 Score=113.76 Aligned_cols=153 Identities=23% Similarity=0.181 Sum_probs=110.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh-------hhhhHHhhcc
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-------RSITRSYYRG 78 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 78 (210)
..+++++|+|++|||||+++|++........++++.+..+..+.+++ ..+++.|+||.-+- .......++.
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 46899999999999999999999887776666667777777777776 45789999983211 1345567899
Q ss_pred ccEEEEEEECCChhh-HHHHHHHHHH------------------------------------------------------
Q 028303 79 AAGALLVYDITRRET-FNHLSSWLED------------------------------------------------------ 103 (210)
Q Consensus 79 ~d~~i~V~d~~~~~s-~~~~~~~~~~------------------------------------------------------ 103 (210)
+|++|+|+|+..... .+-+...+..
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999986554 3333333320
Q ss_pred --------H---HhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 104 --------A---RQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 104 --------~---~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
+ ......-+|.++|.||.|+.. .++...+.+.. .++++||+.+.|++++.+.|.+.+
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 0 000011479999999999743 44555555444 689999999999999988877654
No 248
>PLN03127 Elongation factor Tu; Provisional
Probab=99.65 E-value=6.4e-15 Score=121.86 Aligned_cols=144 Identities=15% Similarity=0.117 Sum_probs=91.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhC------CCCCC--------CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDK------RFQPV--------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (210)
.+.++|+++|+.++|||||+++|.+. ..... .....+.+.......++....++.++||||+..|.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 45699999999999999999999732 10000 01112344444445555555678899999999887
Q ss_pred hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCCC---HHHHHHHHHHc----
Q 028303 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS---KEEGEQFAKEN---- 141 (210)
Q Consensus 70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~---- 141 (210)
......+..+|++++|+|+.++.... ....+..+... ++| +|+++||+|+.+..... .+++.+++...
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~ 214 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPG 214 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77777777899999999998753322 22333333332 678 47889999986422211 11233333322
Q ss_pred -CCeEEEEecC
Q 028303 142 -GLLFLEASAR 151 (210)
Q Consensus 142 -~~~~~~~sa~ 151 (210)
.++++++|+.
T Consensus 215 ~~vpiip~Sa~ 225 (447)
T PLN03127 215 DEIPIIRGSAL 225 (447)
T ss_pred CcceEEEeccc
Confidence 3678888875
No 249
>PRK13351 elongation factor G; Reviewed
Probab=99.65 E-value=3e-15 Score=130.51 Aligned_cols=118 Identities=17% Similarity=0.163 Sum_probs=82.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCC-------------CCCC---CceeEEEEEEEEECCEEEEEEEEecCCcch
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-------------VHDL---TIGVEFGARMVTIDGRPIKLQIWDTAGQES 67 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (210)
+...+|+|+|+.++|||||+++|+...-.. .+.+ ..+.+.......+......+.+|||||+..
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 345799999999999999999998532100 0000 011222222222333457889999999999
Q ss_pred hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 68 ~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
+...+..+++.+|++++|+|++++........| ..+.. .++|+++++||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 998899999999999999999987665544333 33332 3789999999999853
No 250
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.65 E-value=1.1e-14 Score=99.40 Aligned_cols=106 Identities=21% Similarity=0.167 Sum_probs=69.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh---------hhhhHHhhc
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF---------RSITRSYYR 77 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~ 77 (210)
+|+|+|.+|+|||||+|+|++..... ...+..+.......+.+++.. +.++||||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 68999999999999999999864322 122222333333445566655 469999995321 112333448
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEec
Q 028303 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120 (210)
Q Consensus 78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 120 (210)
.+|++++|+|++++.. +.....+..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999887422 22333344442 47899999998
No 251
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=9.9e-15 Score=119.11 Aligned_cols=155 Identities=19% Similarity=0.143 Sum_probs=118.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
...-|.+||+..-|||||+..|-+..........++.......+.++.+ -.++|.||||+..|..++..-..-.|.+++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 4467899999999999999999999887777777777777777777744 578999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEecCCCCC
Q 028303 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG---------LLFLEASARTAQN 155 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~~~~ 155 (210)
|+.++|+--- +....+......++|+|+.+||+|.++ .+.+.+.+-...++ +.++++||++|.|
T Consensus 231 VVAadDGVmp----QT~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 231 VVAADDGVMP----QTLEAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEccCCccH----hHHHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 9999985321 222222222334899999999999764 33344444433333 4689999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 156 VEEAFIKTAAKI 167 (210)
Q Consensus 156 i~~~~~~l~~~~ 167 (210)
++.+.+.+.-+.
T Consensus 304 l~~L~eaill~A 315 (683)
T KOG1145|consen 304 LDLLEEAILLLA 315 (683)
T ss_pred hHHHHHHHHHHH
Confidence 999888765443
No 252
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.65 E-value=9.9e-15 Score=122.83 Aligned_cols=117 Identities=19% Similarity=0.195 Sum_probs=82.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCceeEEEEEEEEECCEEEEEEEEecC
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTA 63 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 63 (210)
....+|+|+|++++|||||+++|+...-... .....+.+.......++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 3456999999999999999999863211000 00122444444445556667889999999
Q ss_pred CcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (210)
Q Consensus 64 G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (210)
|+..|.......++.+|++|+|+|+++... .....++..... .++|+++++||+|+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 999888877778899999999999987522 223344443332 368999999999974
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.64 E-value=5.3e-15 Score=127.76 Aligned_cols=152 Identities=20% Similarity=0.156 Sum_probs=95.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCC------------CCC-------------------CceeEEEEEEEEECC
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV------------HDL-------------------TIGVEFGARMVTIDG 52 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------------~~~-------------------~~~~~~~~~~~~~~~ 52 (210)
...++|+++|++++|||||+++|+...-.-. ... ..+.+.......+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 3468999999999999999999986432111 000 012222222233333
Q ss_pred EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028303 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 132 (210)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 132 (210)
...++.++||||++.|.......+..+|++++|+|+..+..... ...+..+.... ..|+++++||+|+.+......+
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~~~ 178 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLLG--IRHVVLAVNKMDLVDYDQEVFD 178 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHhC--CCeEEEEEEecccccchhHHHH
Confidence 44567899999999887766677889999999999987543221 12222222221 2578899999998642221122
Q ss_pred ----HHHHHHHHcC---CeEEEEecCCCCCHHH
Q 028303 133 ----EGEQFAKENG---LLFLEASARTAQNVEE 158 (210)
Q Consensus 133 ----~~~~~~~~~~---~~~~~~sa~~~~~i~~ 158 (210)
++..+....+ ++++++||+++.|+.+
T Consensus 179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 2233334444 4589999999999874
No 254
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.64 E-value=8.4e-15 Score=115.94 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=54.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEE---------------------ECC-EEEEEEEEecCCc-
Q 028303 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT---------------------IDG-RPIKLQIWDTAGQ- 65 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G~- 65 (210)
|+++|.+++|||||+++|++........+..+.+....... +++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 58999999999999999998875332222222222222111 122 3367999999997
Q ss_pred ---chhhhhhHH---hhccccEEEEEEECC
Q 028303 66 ---ESFRSITRS---YYRGAAGALLVYDIT 89 (210)
Q Consensus 66 ---~~~~~~~~~---~~~~~d~~i~V~d~~ 89 (210)
+.+..+... .++.+|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 444444444 489999999999997
No 255
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.64 E-value=1.1e-14 Score=108.43 Aligned_cols=159 Identities=17% Similarity=0.167 Sum_probs=93.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CCceeEEEEEEEEECCEEEEEEEEecCCcchhhh--------h---hH
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------I---TR 73 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~---~~ 73 (210)
++|+++|.+|+|||||+|.+++........ ...+.........+.+ ..+.++||||...... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999886544332 1222333333333444 4688999999543211 1 12
Q ss_pred HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCC------CHHHHHHHHHHcCCeE
Q 028303 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAV------SKEEGEQFAKENGLLF 145 (210)
Q Consensus 74 ~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~ 145 (210)
...+..|++++|+++.+ .+..+ ...+..+..... .-.++++++|+.|......+ .....+.+....+-.+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 23467899999999987 22222 222333333322 12578899999996543211 1123344444445556
Q ss_pred EEEecC-----CCCCHHHHHHHHHHHHHH
Q 028303 146 LEASAR-----TAQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 146 ~~~sa~-----~~~~i~~~~~~l~~~~~~ 169 (210)
+..+.+ .+.++.++++.+.+.+..
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 555543 456677777666665544
No 256
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.7e-15 Score=105.56 Aligned_cols=155 Identities=18% Similarity=0.244 Sum_probs=113.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
.+.-|++++|-.++|||||++.|.+++....-+ | .+.....+.+. +.+++.+|.+|+...+..|..++..+|+++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP-T--lHPTSE~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP-T--LHPTSEELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCC-C--cCCChHHheec--CceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 445689999999999999999999887644322 2 12222224444 467889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHH---HHc--------------CCeE
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFA---KEN--------------GLLF 145 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~---~~~--------------~~~~ 145 (210)
+.+|+.+.+.+.+.+..+..+..... ..+|+++.+||+|.+... +.++.+... +.. .+.+
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev 170 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV 170 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence 99999999999888877776655442 579999999999987533 444433211 111 1236
Q ss_pred EEEecCCCCCHHHHHHHHHH
Q 028303 146 LEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 146 ~~~sa~~~~~i~~~~~~l~~ 165 (210)
+.||...+.+.-+.|.++.+
T Consensus 171 fmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 171 FMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEEEEEccCccceeeeehhh
Confidence 77887777777777766544
No 257
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=4.9e-15 Score=111.92 Aligned_cols=161 Identities=19% Similarity=0.259 Sum_probs=106.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEE-EEECCEEEEEEEEecCCcch-------hhhhhHHh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM-VTIDGRPIKLQIWDTAGQES-------FRSITRSY 75 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~ 75 (210)
...++|+++|.+|+|||||+|+|+.....+...-..+.+..... ..+++ -.+.|||+||-++ +..+...+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 35689999999999999999999976655544222222222221 23344 3578999999543 66778888
Q ss_pred hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC-------CCCHHHHHHHHHH--------
Q 028303 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR-------AVSKEEGEQFAKE-------- 140 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------~~~~~~~~~~~~~-------- 140 (210)
+...|++++++++.++.---+...|...+... .+.++++++|.+|....- ......++++...
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999875433333333333222 247999999999985421 1111112222211
Q ss_pred --cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 141 --NGLLFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 141 --~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
.-.|++.++...+.|++++...++..+.
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1246788888999999999988887765
No 258
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1.5e-14 Score=112.27 Aligned_cols=164 Identities=17% Similarity=0.120 Sum_probs=108.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh----hhhhH---Hhhccc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----RSITR---SYYRGA 79 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~---~~~~~~ 79 (210)
.-|.++|.|++|||||++.++..+--....++++....-..+.+.. .-.|.+=|.||.-+- ..+-. ..+.++
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 3478999999999999999998765444444445555555555532 335778999993211 11222 345578
Q ss_pred cEEEEEEECCChh---hHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe-EEEEecCCC
Q 028303 80 AGALLVYDITRRE---TFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTA 153 (210)
Q Consensus 80 d~~i~V~d~~~~~---s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~ 153 (210)
.++++|+|++..+ ..++......++..+.. .+.|.++|+||+|+....+........+....+.. .+.+|+.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 8999999998643 35555556666655543 57899999999997543322222233333333333 222999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 028303 154 QNVEEAFIKTAAKILQNI 171 (210)
Q Consensus 154 ~~i~~~~~~l~~~~~~~~ 171 (210)
.+++++...+.+.+....
T Consensus 319 ~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 319 EGLDELLRALAELLEETK 336 (369)
T ss_pred cCHHHHHHHHHHHHHHhh
Confidence 999999999888877775
No 259
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.61 E-value=3.7e-15 Score=108.02 Aligned_cols=116 Identities=22% Similarity=0.365 Sum_probs=71.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEE-CCEEEEEEEEecCCcchhhhhhHH---hhccccE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRS---YYRGAAG 81 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~ 81 (210)
.-.|+++|+.|+|||+|+.+|..+...+..... ..... +.+ ......+.++|+||+...+..... +...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~---~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA---YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE---CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce---EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 357899999999999999999998553333322 11111 112 123336789999999987764444 4788999
Q ss_pred EEEEEECCC-hhhHHHHHHHHHHHHhhc---CCCCeEEEEEecCCCCC
Q 028303 82 ALLVYDITR-RETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 82 ~i~V~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~ 125 (210)
+|||+|++. ......+..++..+.... ....|++|+.||.|+..
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 999999985 344555555544443222 36799999999999854
No 260
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=1.9e-14 Score=115.82 Aligned_cols=159 Identities=23% Similarity=0.240 Sum_probs=114.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCC---------------CCCCCCCceeEEEEEEEEE---CCEEEEEEEEecCCc
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF---------------QPVHDLTIGVEFGARMVTI---DGRPIKLQIWDTAGQ 65 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 65 (210)
++.-+..++.+-..|||||..||+...- .-+.....++......+.+ ++..+.++++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 4455788999999999999999975311 1112222233333333322 557899999999999
Q ss_pred chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe-
Q 028303 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL- 144 (210)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~- 144 (210)
-.|.......+..|.+.++|+|++.+..-+.+.+.+..+.. +.-+|.|+||+|++.... ..-..++-+-.+++
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~ 160 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDA 160 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCc
Confidence 99998888888899999999999998776777776666644 678999999999976332 12222333334543
Q ss_pred --EEEEecCCCCCHHHHHHHHHHHHH
Q 028303 145 --FLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 145 --~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
.+.+|||+|.|++++++.|++++.
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred chheeEecccCCCHHHHHHHHHhhCC
Confidence 789999999999998888777654
No 261
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.9e-14 Score=114.31 Aligned_cols=155 Identities=19% Similarity=0.133 Sum_probs=104.1
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCC--C---------------C------------CCCCCceeEEEEEEEEECCE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRF--Q---------------P------------VHDLTIGVEFGARMVTIDGR 53 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~---------------~------------~~~~~~~~~~~~~~~~~~~~ 53 (210)
..+.++++++|+..+|||||+-+|+...- . . ....-.+.+.......++..
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 46779999999999999999999864310 0 0 01112245555555566666
Q ss_pred EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHH------HHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH------LSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~------~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 127 (210)
.+.++|+|+||+..|-......+.++|+.|+|+|+.+++.... .+......+.. + -..+||++||+|..+-.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-G-i~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-G-IKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-C-CceEEEEEEcccccccC
Confidence 7789999999999999988889999999999999998742111 22222222222 1 24678889999987644
Q ss_pred CCCHHHHHH----HHHHc-----CCeEEEEecCCCCCHHHH
Q 028303 128 AVSKEEGEQ----FAKEN-----GLLFLEASARTAQNVEEA 159 (210)
Q Consensus 128 ~~~~~~~~~----~~~~~-----~~~~~~~sa~~~~~i~~~ 159 (210)
+...+++.. +.+.. .++|+++|+..|+|+.+.
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 333343332 22222 366999999999987653
No 262
>PRK12739 elongation factor G; Reviewed
Probab=99.59 E-value=5.2e-14 Score=122.68 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=81.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCC-----C-------------CCCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-----P-------------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (210)
+...+|+++|++++|||||+++|+...-. . +.....+.+.....+.++ ..++.+|||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCH
Confidence 45679999999999999999999752110 0 011222333333334444 457889999999
Q ss_pred chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
..+...+...++.+|++++|+|+.++...... ..+..+.. .++|+|+++||+|+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 88888888999999999999999886443322 22333332 3689999999999863
No 263
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.58 E-value=1.4e-14 Score=96.45 Aligned_cols=136 Identities=21% Similarity=0.189 Sum_probs=95.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc----hhhhhhHHhhccccEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----SFRSITRSYYRGAAGAL 83 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 83 (210)
|++++|..|+|||||.+.|.+... .+..|.. +.++... .+||||.- .+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQA-------ve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQA-------VEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccce-------eeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999997753 2333322 2232222 57999943 22223344557899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~ 162 (210)
+|-.++++++.-. ..+.... ..|+|-|++|.|+.+ ..+.+..+.+..+-|. ++|++|+.++.|+++++++
T Consensus 70 ~v~~and~~s~f~-----p~f~~~~--~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDIG--VKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccCC-----ccccccc--ccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 9999999865211 1111111 456999999999986 3345667788888775 4999999999999999998
Q ss_pred HHH
Q 028303 163 TAA 165 (210)
Q Consensus 163 l~~ 165 (210)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 865
No 264
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.58 E-value=5e-14 Score=122.78 Aligned_cols=114 Identities=19% Similarity=0.114 Sum_probs=80.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCC-----CC-------------CCCceeEEEEEEEEECCEEEEEEEEecCCcch
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-----VH-------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (210)
.-+|+++|++++|||||+++|+...-.. .. ....+.......+.++ ...+.+|||||+..
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG~~~ 87 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPGHVD 87 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCCCcc
Confidence 4599999999999999999997422110 00 1112233333333343 56789999999998
Q ss_pred hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 68 ~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
+...+...++.+|++++|+|+.++...... .++..+.. .++|+++++||+|+..
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 888888899999999999999986544433 22333332 3689999999999865
No 265
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.57 E-value=2.1e-13 Score=111.15 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=56.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEE---------------------C-CEEEEEEEEecCC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI---------------------D-GRPIKLQIWDTAG 64 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G 64 (210)
++|+++|.|++|||||+++|++........+..+.+.......+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999988765422233333333322221 1 1235789999999
Q ss_pred c----chhhhhhHHh---hccccEEEEEEECC
Q 028303 65 Q----ESFRSITRSY---YRGAAGALLVYDIT 89 (210)
Q Consensus 65 ~----~~~~~~~~~~---~~~~d~~i~V~d~~ 89 (210)
. +....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2333444444 88999999999996
No 266
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=2.4e-14 Score=115.63 Aligned_cols=167 Identities=22% Similarity=0.207 Sum_probs=106.4
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch-hhh--------hhHHh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRS--------ITRSY 75 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~--------~~~~~ 75 (210)
.-++|+++|+||+|||||+|.|......-..+.+ +++....+..++-..+.+.|.||+|-.+ -.. .....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-GTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC-CcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 3489999999999999999999998776654443 4444444444444456788999999554 111 23345
Q ss_pred hccccEEEEEEECCC--hhhHHHHHHHHHHHHhhcC------CCCeEEEEEecCCCCCC-CCCCHHHHHHHHHHc---CC
Q 028303 76 YRGAAGALLVYDITR--RETFNHLSSWLEDARQHAN------PNMSIMLVGNKCDLAHR-RAVSKEEGEQFAKEN---GL 143 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~--~~s~~~~~~~~~~~~~~~~------~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~---~~ 143 (210)
+..+|++++|+|+.. -++...+...+........ ...|++++.||.|+... ...... ...+.... ..
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccCccc
Confidence 678999999999943 3332233333333322111 24789999999998653 111110 11111111 12
Q ss_pred e-EEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 028303 144 L-FLEASARTAQNVEEAFIKTAAKILQNIQE 173 (210)
Q Consensus 144 ~-~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 173 (210)
+ +.++|+++++++.++.+.|...+......
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~~ 455 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERLVVS 455 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHhhcC
Confidence 3 45699999999999999988877766653
No 267
>PRK09866 hypothetical protein; Provisional
Probab=99.56 E-value=5.5e-13 Score=112.00 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=72.7
Q ss_pred EEEEEecCCcch-----hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC
Q 028303 56 KLQIWDTAGQES-----FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 130 (210)
Q Consensus 56 ~~~i~D~~G~~~-----~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 130 (210)
++.++||||-.. ........+..+|+++||+|+....+..+. .....+... ....|+++|+||+|+.++....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~-~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAV-GQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence 567899999643 233344578999999999999875433321 223333332 2235999999999986433333
Q ss_pred HHHHHHHHH----HcC---CeEEEEecCCCCCHHHHHHHHHH
Q 028303 131 KEEGEQFAK----ENG---LLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 131 ~~~~~~~~~----~~~---~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
.+.+..+.. ... ..+|++||+.+.|++++++.|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 455555432 212 35999999999999999998876
No 268
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.54 E-value=2.6e-13 Score=107.98 Aligned_cols=119 Identities=21% Similarity=0.260 Sum_probs=84.9
Q ss_pred EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCCh----------hhHHHHHHHHHHHHhhcC-CCCeEEEEEecC
Q 028303 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLSSWLEDARQHAN-PNMSIMLVGNKC 121 (210)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~ 121 (210)
..+.+.+||++|+...+..|..++.+++++|||+|+++. ..+.+....+..+..... .+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 456789999999999999999999999999999999874 223333334444333222 578999999999
Q ss_pred CCCCC----------------CCCCHHHHHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303 122 DLAHR----------------RAVSKEEGEQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (210)
Q Consensus 122 D~~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 171 (210)
|+..+ ...+.+.+..+... ..+..+.++|.+-.++..+|+.+.+.++...
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 96321 12234455444432 1234568889999999999999888887765
No 269
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4.9e-13 Score=97.31 Aligned_cols=113 Identities=17% Similarity=0.267 Sum_probs=78.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhc---cccEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR---GAAGAL 83 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~i 83 (210)
-.|+++|+.+||||+|+-+|..+.+..... .++.....+.+.... ++++|.||+...+.-...+++ .+-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 468999999999999999998875433322 223333334444333 789999999988876666666 788999
Q ss_pred EEEECCCh-hhHHHHHHHHHHHHhhc---CCCCeEEEEEecCCCC
Q 028303 84 LVYDITRR-ETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLA 124 (210)
Q Consensus 84 ~V~d~~~~-~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~ 124 (210)
||+|+... ....++..++..+.... ..+.|++++.||.|+.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 99998753 23444555544443333 4678999999999984
No 270
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.51 E-value=2.3e-13 Score=119.00 Aligned_cols=117 Identities=19% Similarity=0.200 Sum_probs=81.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhC---------------CCCCC---CCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDK---------------RFQPV---HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (210)
++..+|+++|+.++|||||+++|+.. .+.+. ...|.........+.+++..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34579999999999999999999752 11111 1112222222223345677789999999999
Q ss_pred chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (210)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (210)
..|.......++.+|++++|+|+.++........| ..+.. .+.|+++++||+|..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK---ENVKPVLFINKVDRL 151 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH---cCCCEEEEEEChhcc
Confidence 99888888999999999999999875432222222 22222 367889999999985
No 271
>PRK12740 elongation factor G; Reviewed
Probab=99.51 E-value=5.1e-13 Score=116.41 Aligned_cols=107 Identities=21% Similarity=0.221 Sum_probs=74.0
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCC------------------CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhH
Q 028303 12 IGDTGVGKSCLLLQFTDKRFQPV------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR 73 (210)
Q Consensus 12 ~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 73 (210)
+|++++|||||+++|+...-... .....+.......+.+ ..+.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--~~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--KGHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--CCEEEEEEECCCcHHHHHHHH
Confidence 69999999999999964321100 0112222222233333 356799999999998888888
Q ss_pred HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (210)
Q Consensus 74 ~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (210)
..+..+|++++|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 889999999999999987654433332 33322 368999999999975
No 272
>PRK00007 elongation factor G; Reviewed
Probab=99.50 E-value=5.3e-13 Score=116.36 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=79.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCC--C---C-------------CCCCceeEEEEEEEEECCEEEEEEEEecCCcc
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ--P---V-------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 66 (210)
...+|+++|++++|||||+++|+...-. . . .....+.+.....+.+. ..++.++||||+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG~~ 86 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPGHV 86 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCCcH
Confidence 3569999999999999999999742110 0 0 11122333333334444 4678899999998
Q ss_pred hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
.+.......++.+|++++|+|+..+....... .+..+.. .++|+++++||+|+..
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence 88777888889999999999998765433332 2333333 2689999999999875
No 273
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.49 E-value=1.7e-12 Score=115.79 Aligned_cols=145 Identities=26% Similarity=0.259 Sum_probs=99.0
Q ss_pred CHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEE----------------EEEEEEecCCcchhhhhhHHhhccccE
Q 028303 18 GKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP----------------IKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 18 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
+||||+.++.+..........++.+.....+..+... -.+.+|||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999988876666665666555555544211 127899999999998888888889999
Q ss_pred EEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC----------------HHHHH----HH-
Q 028303 82 ALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS----------------KEEGE----QF- 137 (210)
Q Consensus 82 ~i~V~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----------------~~~~~----~~- 137 (210)
+++|+|++++ .++..+ ..+.. .++|+++++||+|+....... .++.. ++
T Consensus 553 vlLVVDa~~Gi~~qT~e~I----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAI----NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHH----HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999873 333332 22222 268999999999985321100 01110 00
Q ss_pred --HHH---------------cCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 028303 138 --AKE---------------NGLLFLEASARTAQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 138 --~~~---------------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 169 (210)
+.. ..++++++||++|+|+++++..|..+...
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~ 674 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK 674 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence 111 13579999999999999999887655443
No 274
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.49 E-value=2.7e-12 Score=99.17 Aligned_cols=160 Identities=16% Similarity=0.306 Sum_probs=116.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC--CEEEEEEEEecCCcchhhhhhHHhhccc----c
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--GRPIKLQIWDTAGQESFRSITRSYYRGA----A 80 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~----d 80 (210)
-+|+|+|+.++|||||+.+|-+.. ...+..+..+....+.-+ +...++.+|-.-|+-....+....+... .
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 479999999999999999998775 344444555555444332 2334788999999887777777777655 3
Q ss_pred EEEEEEECCChhh-HHHHHHHHHHHHhhcC--------------------------------------------------
Q 028303 81 GALLVYDITRRET-FNHLSSWLEDARQHAN-------------------------------------------------- 109 (210)
Q Consensus 81 ~~i~V~d~~~~~s-~~~~~~~~~~~~~~~~-------------------------------------------------- 109 (210)
++|++.|+++|.. ++.+..|...+..+..
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l 209 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL 209 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence 8999999999955 4556666553322111
Q ss_pred -----------CCCeEEEEEecCCC----CCCCCCC-------HHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 110 -----------PNMSIMLVGNKCDL----AHRRAVS-------KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 110 -----------~~~p~ivv~nK~D~----~~~~~~~-------~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
.++|++||.||+|. +.+.+.. ...++.||..++..++.+|++...|++-+..+|.++.
T Consensus 210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 16899999999998 2222221 2346788999999999999999999999999998876
Q ss_pred HH
Q 028303 168 LQ 169 (210)
Q Consensus 168 ~~ 169 (210)
.-
T Consensus 290 yG 291 (473)
T KOG3905|consen 290 YG 291 (473)
T ss_pred cC
Confidence 53
No 275
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.48 E-value=3.9e-13 Score=108.89 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=117.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc-----hhhh----hhHHh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-----SFRS----ITRSY 75 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~----~~~~~ 75 (210)
..-+++|+|.|++|||||++.++.........++++......+ ++.+..+|+++||||.- ..+. .....
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 4568899999999999999999987766655555455444443 45556789999999931 1111 11222
Q ss_pred hccccEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHH---HHHHHHHcCCeEEEEec
Q 028303 76 YRGAAGALLVYDITR--RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE---GEQFAKENGLLFLEASA 150 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~sa 150 (210)
.+--.+|+|+.|++. +.|...-...|..+..... +.|+|+|+||+|......++.+. ...+....+++++++|+
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~ 323 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC 323 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence 333347999999986 4566666667777766553 67999999999997666655443 23334444589999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhc
Q 028303 151 RTAQNVEEAFIKTAAKILQNIQEG 174 (210)
Q Consensus 151 ~~~~~i~~~~~~l~~~~~~~~~~~ 174 (210)
.+.+|+-++-...++.++...=++
T Consensus 324 ~~eegVm~Vrt~ACe~LLa~RVE~ 347 (620)
T KOG1490|consen 324 VQEEGVMDVRTTACEALLAARVEQ 347 (620)
T ss_pred cchhceeeHHHHHHHHHHHHHHHH
Confidence 999999998887777766655443
No 276
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.48 E-value=3.2e-12 Score=102.60 Aligned_cols=119 Identities=19% Similarity=0.244 Sum_probs=83.9
Q ss_pred EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChh----------hHHHHHHHHHHHHhhcC-CCCeEEEEEecCC
Q 028303 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLSSWLEDARQHAN-PNMSIMLVGNKCD 122 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D 122 (210)
...+.+||.+|+...+..|..++.+++++|||+|+++.+ .+......+..+..... .+.|+++++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 456789999999999999999999999999999999742 23344444444433222 5789999999999
Q ss_pred CCCC--------------C-CCCHHHHHHHHHH-----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028303 123 LAHR--------------R-AVSKEEGEQFAKE-----------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172 (210)
Q Consensus 123 ~~~~--------------~-~~~~~~~~~~~~~-----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 172 (210)
+..+ . ..+.+.+..+... ..+..+.++|.+-.++..+|+.+...++....
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 7321 1 1233444443332 12345688899999999999998888777654
No 277
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.47 E-value=1.7e-12 Score=99.68 Aligned_cols=118 Identities=20% Similarity=0.271 Sum_probs=71.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CceeEEEEEEEEECCEEEEEEEEecCCcchhh--h--------hh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--S--------IT 72 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~--------~~ 72 (210)
+..++|+|+|.+|+|||||+|+|++......... ..+..........++ ..+.+|||||..+.. . ..
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 4579999999999999999999999875443222 223333333333444 568899999965442 1 11
Q ss_pred HHhhc--cccEEEEEEECCChh-hHHHHHHHHHHHHhhcCC--CCeEEEEEecCCCC
Q 028303 73 RSYYR--GAAGALLVYDITRRE-TFNHLSSWLEDARQHANP--NMSIMLVGNKCDLA 124 (210)
Q Consensus 73 ~~~~~--~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~ 124 (210)
..++. ..|+++||..++... ...+ ...+..+....+. -.++++|.||+|..
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 22332 568888887666432 1111 1223333322221 25799999999985
No 278
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.46 E-value=1.2e-12 Score=98.58 Aligned_cols=161 Identities=18% Similarity=0.182 Sum_probs=88.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CCceeEEEEEEEEECCEEEEEEEEecCCcchhh-------h-h---hH
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------S-I---TR 73 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~-~---~~ 73 (210)
++|+|+|.+|+||||++|.+++........ ...+.........+++ ..+.++||||..+.. . + ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999988755442 2223333344445666 457799999932211 1 1 11
Q ss_pred HhhccccEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC-------HHHHHHHHHHcCCeE
Q 028303 74 SYYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-------KEEGEQFAKENGLLF 145 (210)
Q Consensus 74 ~~~~~~d~~i~V~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~~ 145 (210)
...+..|++++|+.+..... ...+..++..+.... .-..++||+|..|......+. ....+.+....+-.|
T Consensus 79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~ 157 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRY 157 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence 23457899999999983211 112222333332211 124688889988865443311 012344555556678
Q ss_pred EEEecC------CCCCHHHHHHHHHHHHHHH
Q 028303 146 LEASAR------TAQNVEEAFIKTAAKILQN 170 (210)
Q Consensus 146 ~~~sa~------~~~~i~~~~~~l~~~~~~~ 170 (210)
+..+.+ ....+.++|+.+-+.+...
T Consensus 158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 158 HVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 777766 2245666666655554443
No 279
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.8e-13 Score=104.33 Aligned_cols=163 Identities=18% Similarity=0.151 Sum_probs=111.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCceeEEEEEEE------------------EEC------CEEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMV------------------TID------GRPIK 56 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~------------------~~~------~~~~~ 56 (210)
+..++|.++|+..-|||||.++|++-- +.++.....++....... ... .-..+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 468999999999999999999998642 111111111111111100 001 12347
Q ss_pred EEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC--CCCHHHH
Q 028303 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR--AVSKEEG 134 (210)
Q Consensus 57 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~ 134 (210)
+.|.|.||++-......+-..-.|+.++|++++.+..-...+..+..+.... -..+|++-||+|+..+. ..+.+++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 8999999999888777776677899999999998655445555555544443 34788999999996432 2345566
Q ss_pred HHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 135 EQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 135 ~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
++|.+. .+.+++++||..+.|++-+++.|.+.+.
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 666664 3678999999999999998888776654
No 280
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.45 E-value=3.4e-12 Score=99.70 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=70.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh-------hHHhh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-------TRSYY 76 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~ 76 (210)
..++|+|+|.+|+||||++|+|++........ .+.+.+........+ ..++.+|||||..+.... ...++
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 56899999999999999999999876533211 111222222222334 357899999996543221 11112
Q ss_pred --ccccEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCC
Q 028303 77 --RGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVS 130 (210)
Q Consensus 77 --~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~ 130 (210)
...|+++||..++.......-...+..+....+ .-.++|+++|+.|.......+
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 258999999665432111111122222222221 125789999999975433333
No 281
>PTZ00258 GTP-binding protein; Provisional
Probab=99.45 E-value=3.3e-12 Score=103.24 Aligned_cols=86 Identities=21% Similarity=0.184 Sum_probs=59.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEecCCcch-
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES- 67 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~- 67 (210)
...++|+++|.|++|||||+|+|++........+..+.+.....+.+.+. ..++.++|+||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 34689999999999999999999887654444444455555555544432 23588999999432
Q ss_pred ------hhhhhHHhhccccEEEEEEECC
Q 028303 68 ------FRSITRSYYRGAAGALLVYDIT 89 (210)
Q Consensus 68 ------~~~~~~~~~~~~d~~i~V~d~~ 89 (210)
........++.+|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112334567899999999973
No 282
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.45 E-value=1.3e-12 Score=105.07 Aligned_cols=173 Identities=18% Similarity=0.168 Sum_probs=116.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCC--CC------------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRF--QP------------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 71 (210)
.-+|+++.+...|||||+..|+.+.- .+ .-..-.+++.-.+...+..+.++++|+||||+..|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 35799999999999999999986531 11 01112356666665556667789999999999999999
Q ss_pred hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-CCHHHHHHHHHH-------cCC
Q 028303 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAKE-------NGL 143 (210)
Q Consensus 72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~ 143 (210)
....+.-+|++++++|+.++.- ...+... ......+.+.|+|+||+|.+..+. .-..+...++.+ +++
T Consensus 85 VERvl~MVDgvlLlVDA~EGpM-PQTrFVl---kKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPM-PQTRFVL---KKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCC-CchhhhH---HHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 9999999999999999998532 1122222 222234778899999999876443 223444455444 356
Q ss_pred eEEEEecCCCC------CHHHHHHHHHHHHHHHHhhccccccccC
Q 028303 144 LFLEASARTAQ------NVEEAFIKTAAKILQNIQEGALDAVNDS 182 (210)
Q Consensus 144 ~~~~~sa~~~~------~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 182 (210)
|++..|++.|. +-.+-+.-|.+.+++..|.+.-+.+.|-
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~Pl 205 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPL 205 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCe
Confidence 78888988763 2222344555555666666655444444
No 283
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.45 E-value=2.8e-12 Score=105.63 Aligned_cols=160 Identities=21% Similarity=0.294 Sum_probs=121.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...+++.|+|+.++|||.|++.++++.+...+..+....+......+.+..-.+.+-|.+-. ....+.... ..+|+++
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 46799999999999999999999999988877777777777777777776667778887654 222222222 7899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe-EEEEecCCCCCHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIK 162 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~ 162 (210)
++||.+++.++..+...++..... .+.|+++|++|+|+.+..+...-+..+++.+++++ -..+|.+.... .++|..
T Consensus 501 ~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~k 577 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIK 577 (625)
T ss_pred EecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence 999999999999988776665544 48999999999999765544333347889988876 44556664333 788887
Q ss_pred HHHHHH
Q 028303 163 TAAKIL 168 (210)
Q Consensus 163 l~~~~~ 168 (210)
|...+.
T Consensus 578 L~~~A~ 583 (625)
T KOG1707|consen 578 LATMAQ 583 (625)
T ss_pred HHHhhh
Confidence 776543
No 284
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.44 E-value=2.6e-12 Score=97.13 Aligned_cols=168 Identities=16% Similarity=0.187 Sum_probs=97.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-------c-----eeEEEEEE-EEE--------------------
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-------I-----GVEFGARM-VTI-------------------- 50 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------~-----~~~~~~~~-~~~-------------------- 50 (210)
+..+-|+|+|..|||||||++||.........++- . +.+..... +.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 45678999999999999999999765433322210 0 00000000 000
Q ss_pred ---------------CCEEEEEEEEecCCcchhhh------hhHHhh--ccccEEEEEEECCChhh-HHHHHHHHHHHHh
Q 028303 51 ---------------DGRPIKLQIWDTAGQESFRS------ITRSYY--RGAAGALLVYDITRRET-FNHLSSWLEDARQ 106 (210)
Q Consensus 51 ---------------~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~d~~i~V~d~~~~~s-~~~~~~~~~~~~~ 106 (210)
....+.+.++|||||-+... +....+ ...-++++|+|.....+ .-.+.+++.....
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 01234578999999754332 222222 23457888888654222 1223333333334
Q ss_pred hcCCCCeEEEEEecCCCCCCCCCC--------HHHHH--------------------HHHHHcCCeEEEEecCCCCCHHH
Q 028303 107 HANPNMSIMLVGNKCDLAHRRAVS--------KEEGE--------------------QFAKENGLLFLEASARTAQNVEE 158 (210)
Q Consensus 107 ~~~~~~p~ivv~nK~D~~~~~~~~--------~~~~~--------------------~~~~~~~~~~~~~sa~~~~~i~~ 158 (210)
..+.+.|.|++.||.|+.+..... .+++. +|+. ++..+-+|+.+|.|+++
T Consensus 177 lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~--~lrtv~VSs~tG~G~dd 254 (366)
T KOG1532|consen 177 LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYR--SLRTVGVSSVTGEGFDD 254 (366)
T ss_pred HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHh--hCceEEEecccCCcHHH
Confidence 445689999999999986432110 01111 1111 45688999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 028303 159 AFIKTAAKILQNIQE 173 (210)
Q Consensus 159 ~~~~l~~~~~~~~~~ 173 (210)
+|..+.+.+-....+
T Consensus 255 f~~av~~~vdEy~~~ 269 (366)
T KOG1532|consen 255 FFTAVDESVDEYEEE 269 (366)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999887777655543
No 285
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.42 E-value=6.8e-12 Score=93.38 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=65.4
Q ss_pred EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028303 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 134 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 134 (210)
....++++.|.......... -+|.+|.|+|+.+..+... .+...+ ...-++++||+|+.+......+.+
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 34567788774322222211 2578999999988766322 111122 122389999999975323334444
Q ss_pred HHHHHH--cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 135 EQFAKE--NGLLFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 135 ~~~~~~--~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
.+.+.. .+.+++++|+++|+|+.+++++|.+.++
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 444443 4678999999999999999999987643
No 286
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.42 E-value=7e-12 Score=103.74 Aligned_cols=164 Identities=17% Similarity=0.291 Sum_probs=113.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC--CEEEEEEEEecCCcchhhhhhHHhhccc----c
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--GRPIKLQIWDTAGQESFRSITRSYYRGA----A 80 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~----d 80 (210)
-.|+|+|..++|||||+.+|.+.. ...++.+.++....+.-+ ....++++|-..|...+..+....+... -
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 479999999999999999987643 344455666655543322 1234789999998877777777766543 2
Q ss_pred EEEEEEECCChhhH-HHHHHHHHHHHhhc---------------------------------------------------
Q 028303 81 GALLVYDITRRETF-NHLSSWLEDARQHA--------------------------------------------------- 108 (210)
Q Consensus 81 ~~i~V~d~~~~~s~-~~~~~~~~~~~~~~--------------------------------------------------- 108 (210)
++++|+|.+.|..+ +.+..|+..+..+.
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 89999999998664 34444443111000
Q ss_pred -----------CCCCeEEEEEecCCCC----CCCCC-------CHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303 109 -----------NPNMSIMLVGNKCDLA----HRRAV-------SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 109 -----------~~~~p~ivv~nK~D~~----~~~~~-------~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
..++|++||++|+|.. .+... ..+.++.+|..+++.++.+|++...+++-++.+|...
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~ 262 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR 262 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence 0148999999999963 11111 1234677888899999999999999999999998887
Q ss_pred HHHHHhh
Q 028303 167 ILQNIQE 173 (210)
Q Consensus 167 ~~~~~~~ 173 (210)
+...-..
T Consensus 263 l~~~~f~ 269 (472)
T PF05783_consen 263 LYGFPFK 269 (472)
T ss_pred hccCCCC
Confidence 7654443
No 287
>PRK13768 GTPase; Provisional
Probab=99.41 E-value=2.5e-12 Score=99.27 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=69.6
Q ss_pred EEEEEecCCcchhh---hhhHHhhcc-----ccEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303 56 KLQIWDTAGQESFR---SITRSYYRG-----AAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR 126 (210)
Q Consensus 56 ~~~i~D~~G~~~~~---~~~~~~~~~-----~d~~i~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (210)
.+.+||+||+.+.. ..+..+.+. .+++++|+|+.......+.. .++..+......+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 57899999976543 333333332 88999999997654333322 2222221111247899999999998654
Q ss_pred CCCCHHHHHH----------------------------HHHHcC--CeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 127 RAVSKEEGEQ----------------------------FAKENG--LLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 127 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
... ++... .+...+ .+++++|++++.|++++.++|.+.+
T Consensus 178 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 178 EEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 321 11111 122223 5789999999999999999987765
No 288
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.40 E-value=1e-11 Score=108.96 Aligned_cols=116 Identities=19% Similarity=0.165 Sum_probs=78.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------C-----CCceeEEEE--EEEEECCEEEEEEEEecCCcc
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------D-----LTIGVEFGA--RMVTIDGRPIKLQIWDTAGQE 66 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~-----~~~~~~~~~--~~~~~~~~~~~~~i~D~~G~~ 66 (210)
..-+|+++|+.++|||||+.+|+...-.... . ...+..... ..+.+++....+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4458999999999999999999753211000 0 001111111 122334456789999999999
Q ss_pred hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (210)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (210)
.|.......++.+|++++|+|+..+........| ..+... +.|.|+++||+|..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHHc---CCCeEEEEECchhh
Confidence 9988888899999999999999876433322222 222222 56889999999975
No 289
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.39 E-value=7.2e-12 Score=86.01 Aligned_cols=114 Identities=29% Similarity=0.423 Sum_probs=81.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+..+.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999998777654433 3322 222334556778899999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 157 (210)
++.++..++..+ |...+....+.+.|.++++||.|+.++.....++... ++++|++++.++.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~~--------~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGLE--------FAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHHH--------HHHHhCCCcchhh
Confidence 999999888765 7766665555678899999999985444444433333 4466888888874
No 290
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.38 E-value=1.3e-12 Score=100.38 Aligned_cols=96 Identities=22% Similarity=0.270 Sum_probs=77.0
Q ss_pred chhhhhhHHhhccccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe
Q 028303 66 ESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 144 (210)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 144 (210)
+.+..+...+++++|++++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+......+.+. .+...+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~-~~~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLD-IYRNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHH-HHHHCCCe
Confidence 566777788999999999999999877 88899998876643 37899999999999654443333343 44457889
Q ss_pred EEEEecCCCCCHHHHHHHHHH
Q 028303 145 FLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 145 ~~~~sa~~~~~i~~~~~~l~~ 165 (210)
++++||+++.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999988764
No 291
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.38 E-value=7.9e-12 Score=97.56 Aligned_cols=151 Identities=22% Similarity=0.212 Sum_probs=106.1
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCC-----------------CC--------------CCCCceeEEEEEEEEE
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-----------------PV--------------HDLTIGVEFGARMVTI 50 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------------~~--------------~~~~~~~~~~~~~~~~ 50 (210)
.....++++-+|...=||||||-||+.+... .. .....+++.......+
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 4456789999999999999999999754210 00 0001255555555556
Q ss_pred CCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHH--HHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303 51 DGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS--SWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (210)
Q Consensus 51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (210)
.-.+.+|.+-||||++.|-+....-...+|+.|+++|+..+-. +..+ .++..+.. -..+++.+||+|+.+..+
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl-~QTrRHs~I~sLLG----IrhvvvAVNKmDLvdy~e 156 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVL-EQTRRHSFIASLLG----IRHVVVAVNKMDLVDYSE 156 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhH-HHhHHHHHHHHHhC----CcEEEEEEeeecccccCH
Confidence 5666789999999999999988888889999999999966432 2222 23333332 246788899999988666
Q ss_pred CCHHHHH----HHHHHcCC---eEEEEecCCCCCHH
Q 028303 129 VSKEEGE----QFAKENGL---LFLEASARTAQNVE 157 (210)
Q Consensus 129 ~~~~~~~----~~~~~~~~---~~~~~sa~~~~~i~ 157 (210)
...+++. .|+.++++ .++++||..|+|+.
T Consensus 157 ~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 157 EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 5555443 46666654 48999999998864
No 292
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.38 E-value=3.6e-12 Score=113.21 Aligned_cols=117 Identities=20% Similarity=0.160 Sum_probs=80.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCC----------------CCCCCceeEEEEEEEEE--------------CCE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP----------------VHDLTIGVEFGARMVTI--------------DGR 53 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~~ 53 (210)
+..-+|+|+|+.++|||||+.+|+...-.. +.....+.......+.+ ...
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 455799999999999999999997543110 00001112211222222 123
Q ss_pred EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (210)
.+.++++||||+.+|.......++.+|++|+|+|+.++.......-|. .+.. .++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHH---CCCCEEEEEECCccc
Confidence 567899999999999998899999999999999999875433333332 3322 378999999999986
No 293
>PTZ00416 elongation factor 2; Provisional
Probab=99.37 E-value=4.8e-12 Score=112.23 Aligned_cols=117 Identities=23% Similarity=0.219 Sum_probs=79.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCC----------------CCCCCceeEEEEEEEEEC--------CEEEEEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP----------------VHDLTIGVEFGARMVTID--------GRPIKLQI 59 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i 59 (210)
+..-+|+++|+.++|||||+++|+...-.. +.....++......+.+. +....+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 345699999999999999999998632110 000011111112222332 22567899
Q ss_pred EecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303 60 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (210)
Q Consensus 60 ~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (210)
+||||+..+.......++.+|++|+|+|+.++...... ..+..+.. .+.|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH---cCCCEEEEEEChhhh
Confidence 99999999988888899999999999999986443332 23333333 268999999999985
No 294
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=5.4e-11 Score=92.77 Aligned_cols=172 Identities=19% Similarity=0.205 Sum_probs=103.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCC----CCCCC---CCCceeEEEEEEEEE-------CCEEEEEEEEecCCcchhh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR----FQPVH---DLTIGVEFGARMVTI-------DGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~----~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~ 69 (210)
..++++.++|+..+|||||.++|.... |..+. ....+.+..-..+.+ .+..+++.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 456999999999999999999997532 22111 112222222222222 3456788999999998777
Q ss_pred hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC--CCCCHHH-HHHHHHH---c--
Q 028303 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR--RAVSKEE-GEQFAKE---N-- 141 (210)
Q Consensus 70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~-~~~~~~~---~-- 141 (210)
+.......-.|..++|+|+..+-..+.....+- -...+ ...|+|+||.|...+ +....++ .+...+. .
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLii--g~~~c--~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLII--GELLC--KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhh--hhhhc--cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 666666677799999999987654444433221 11221 245777888886432 2222222 2222221 1
Q ss_pred --CCeEEEEecCCCCCHHHHHHHHHHHHHHHHhhcccccc
Q 028303 142 --GLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAV 179 (210)
Q Consensus 142 --~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 179 (210)
+.|++++|+.+|.--.+.+..|.+.+.++..+...+..
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~ 200 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEE 200 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCC
Confidence 37899999999955555555556666666555544433
No 295
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.35 E-value=1.5e-11 Score=98.43 Aligned_cols=156 Identities=12% Similarity=0.138 Sum_probs=75.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC---CCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhH-----Hhh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD---LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR-----SYY 76 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-----~~~ 76 (210)
..++|+|+|.+|+|||||||.|.+-...+... ....++.....+..+... .+.+||.||-.-...... .-+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 46899999999999999999997643322111 111222222223333222 478999999543322222 235
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCC-------CCCCCCCH----HHHHHHHHH----c
Q 028303 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL-------AHRRAVSK----EEGEQFAKE----N 141 (210)
Q Consensus 77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~-------~~~~~~~~----~~~~~~~~~----~ 141 (210)
...|.+|++.+-.=.. .++ .....+... +.|+++|-||+|. ...+..+. +++++.+.+ .
T Consensus 113 ~~yD~fiii~s~rf~~--ndv-~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 113 YRYDFFIIISSERFTE--NDV-QLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GG-SEEEEEESSS--H--HHH-HHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccCEEEEEeCCCCch--hhH-HHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 5678877766632221 121 122333333 7899999999996 11122222 334443332 2
Q ss_pred CC---eEEEEecCCC--CCHHHHHHHHHHHH
Q 028303 142 GL---LFLEASARTA--QNVEEAFIKTAAKI 167 (210)
Q Consensus 142 ~~---~~~~~sa~~~--~~i~~~~~~l~~~~ 167 (210)
++ ++|.+|..+- .++..+.+.|.+.+
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL 217 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDL 217 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence 33 4899998874 34556555555443
No 296
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.35 E-value=5.2e-11 Score=95.37 Aligned_cols=83 Identities=19% Similarity=0.137 Sum_probs=56.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEE---------------EEEEEEecCCcch----
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP---------------IKLQIWDTAGQES---- 67 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~---- 67 (210)
++|+++|.|++|||||+|+|++........+..+.+.....+.+.+.. ..+.+.|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999887433333443444444444444321 2589999999432
Q ss_pred hhh---hhHHhhccccEEEEEEECC
Q 028303 68 FRS---ITRSYYRGAAGALLVYDIT 89 (210)
Q Consensus 68 ~~~---~~~~~~~~~d~~i~V~d~~ 89 (210)
... .....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 111 2333467899999999984
No 297
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.34 E-value=5.1e-11 Score=90.49 Aligned_cols=140 Identities=16% Similarity=0.151 Sum_probs=82.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
....|+++|++|+|||||++.+.+...........+. ..+ ......++.++||||.- .. ....++.+|++++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVll 109 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLL 109 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEEE
Confidence 4567999999999999999999865321111111111 111 12235568899999863 22 2344688999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEecCCCCCCCCC---CHHHHHH-HHHH--cCCeEEEEecCCCCCH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAV---SKEEGEQ-FAKE--NGLLFLEASARTAQNV 156 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~-~~~~--~~~~~~~~sa~~~~~i 156 (210)
|+|+..+..... ...+..+.. .+.|.+ +|+||.|+.+.... ..++++. +..+ .+.+++.+||++...+
T Consensus 110 viDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 110 LIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred EEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 999986543222 223333332 256754 59999998642211 1122222 2211 2467999999987544
No 298
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=9.4e-12 Score=105.00 Aligned_cols=165 Identities=19% Similarity=0.175 Sum_probs=110.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC------------C----EEEEEEEEecCCcchhh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID------------G----RPIKLQIWDTAGQESFR 69 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~i~D~~G~~~~~ 69 (210)
.+-+||+|+..+|||-|+..+.+.........+.+..+....+... . +---+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 3568999999999999999999876655444443333333333221 1 11146799999999999
Q ss_pred hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC----CCCCH------------HH
Q 028303 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR----RAVSK------------EE 133 (210)
Q Consensus 70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~------------~~ 133 (210)
.++......||++|+|+|+.++---+.+ .-++.++. ++.|+||.+||+|..-. ..... .+
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqti-ESi~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~E 630 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTI-ESINLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNE 630 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchh-HHHHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHH
Confidence 9999999999999999999875222222 22333333 37999999999996310 00000 01
Q ss_pred --------HHHHHHH-c-------------CCeEEEEecCCCCCHHHHHHHHHHHHHHHHhhc
Q 028303 134 --------GEQFAKE-N-------------GLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174 (210)
Q Consensus 134 --------~~~~~~~-~-------------~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 174 (210)
+.+|+.+ + -+.++++||..|+||.+++.+|+++....+.+.
T Consensus 631 F~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k 693 (1064)
T KOG1144|consen 631 FKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK 693 (1064)
T ss_pred HHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 0111111 0 124679999999999999999999888877654
No 299
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.33 E-value=2.3e-12 Score=98.29 Aligned_cols=109 Identities=20% Similarity=0.180 Sum_probs=59.8
Q ss_pred EEEEEecCCcchhhhhhHHhh--------ccccEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303 56 KLQIWDTAGQESFRSITRSYY--------RGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (210)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~V~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (210)
.+.++|||||.++...+.... ...-++++++|+....+ ...+..++..+......+.|.|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 578999999998887655544 33458899999874332 222333333332222237999999999999652
Q ss_pred CCCCHHHH----------------------HHHHH---HcC-C-eEEEEecCCCCCHHHHHHHHHHHH
Q 028303 127 RAVSKEEG----------------------EQFAK---ENG-L-LFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 127 ~~~~~~~~----------------------~~~~~---~~~-~-~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
. .+.. ..++. ..+ + .++++|+.+++++.+++..+-+.+
T Consensus 172 ~---~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 Y---LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp H---HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred h---hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 2 1111 11111 112 3 699999999999999998876654
No 300
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.32 E-value=1.2e-10 Score=92.26 Aligned_cols=124 Identities=22% Similarity=0.284 Sum_probs=85.9
Q ss_pred ECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhh-------HHHHHHHHHHHHhhcC----CCCeEEEEE
Q 028303 50 IDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET-------FNHLSSWLEDARQHAN----PNMSIMLVG 118 (210)
Q Consensus 50 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s-------~~~~~~~~~~~~~~~~----~~~p~ivv~ 118 (210)
+.-+...+.++|+|||...+.-|..++.+++++|||+++++.+. ...+..-+..+..... .+.++|+++
T Consensus 190 F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFL 269 (354)
T KOG0082|consen 190 FTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFL 269 (354)
T ss_pred EEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEe
Confidence 33344678899999999999999999999999999999986432 2223333333333222 578999999
Q ss_pred ecCCCCCC--------------CC-CCHHHHHHHHHH--------c--CCeEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 028303 119 NKCDLAHR--------------RA-VSKEEGEQFAKE--------N--GLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173 (210)
Q Consensus 119 nK~D~~~~--------------~~-~~~~~~~~~~~~--------~--~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 173 (210)
||.|+-++ .. ...+++..+... . .+.++.+.|.+-.+|+.+|..+.+.+.....+
T Consensus 270 NK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk 349 (354)
T KOG0082|consen 270 NKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLK 349 (354)
T ss_pred ecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 99998322 11 233444443332 1 34466778889999999999999988877654
No 301
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.30 E-value=3.4e-11 Score=90.40 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=84.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCC-------CC----CCcee-EEEEEEEEECC--------------------
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-------HD----LTIGV-EFGARMVTIDG-------------------- 52 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-------~~----~~~~~-~~~~~~~~~~~-------------------- 52 (210)
....|+|+|+.|+|||||++++........ .. .+... ......+.+.+
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 467899999999999999999975411100 00 00000 00000011100
Q ss_pred EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028303 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 132 (210)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 132 (210)
....+.++++.|.-. ... .+....+..+.|+|+.+.+... .... .. ...|.++++||+|+.+.......
T Consensus 101 ~~~d~IiIEt~G~l~-~~~--~~~~~~~~~i~Vvd~~~~d~~~--~~~~-~~-----~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 101 DDIDLLFIENVGNLV-CPA--DFDLGEHMRVVLLSVTEGDDKP--LKYP-GM-----FKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCCEEEEecCCCcC-CCc--ccccccCeEEEEEecCcccchh--hhhH-hH-----HhhCCEEEEEHHHccccchhhHH
Confidence 123456667766210 000 1112234556677776543211 1111 11 14578999999999653333334
Q ss_pred HHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 133 EGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 133 ~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
+..+.+... ..+++++|++++.|++++++++.++.
T Consensus 170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 454444443 37899999999999999999998753
No 302
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.29 E-value=6.3e-11 Score=94.18 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=70.9
Q ss_pred EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CH
Q 028303 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SK 131 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~ 131 (210)
.+.+.|+||+|....... ....+|.+++|.+...++.+..+. ..+.. ..-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHHHH
Confidence 467889999996632222 466799999997754454443332 21221 223899999998653321 12
Q ss_pred HHHHHHHHH-------cCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhhcc
Q 028303 132 EEGEQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 175 (210)
Q Consensus 132 ~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~ 175 (210)
.+.+..+.. +..+++.+|++++.|++++++.|.+.+....+++.
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~ 267 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGE 267 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCCh
Confidence 223333322 23579999999999999999999988765554443
No 303
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.29 E-value=8.5e-11 Score=85.18 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=44.0
Q ss_pred EEEEEecCCcc----hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecC
Q 028303 56 KLQIWDTAGQE----SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121 (210)
Q Consensus 56 ~~~i~D~~G~~----~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 121 (210)
.+.|+||||.. .....+..+++.+|++|+|.+++...+......+....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 36899999953 23356778889999999999999866555544444444333 34588999984
No 304
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=9.2e-12 Score=91.86 Aligned_cols=147 Identities=19% Similarity=0.294 Sum_probs=91.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh-----hhHHhhccc
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-----ITRSYYRGA 79 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~ 79 (210)
.-||+++|.+|+||||+=-.++.+..+. ....+.++++......+-| +..+.+||++|++.+-. .....++++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 3589999999999999754444332111 2222333444444444444 45789999999985544 344577899
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEecCCCCCCCC--CCHHHH----HHHHHHcCCeEEEEecC
Q 028303 80 AGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRRA--VSKEEG----EQFAKENGLLFLEASAR 151 (210)
Q Consensus 80 d~~i~V~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~--~~~~~~----~~~~~~~~~~~~~~sa~ 151 (210)
+++|+|||++..+-..++..+...+.... .+...+++.++|.|+..... ...++. +.+....++.++++|..
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 99999999998877677766665443333 26678888999999964322 111111 12222234556777766
Q ss_pred CC
Q 028303 152 TA 153 (210)
Q Consensus 152 ~~ 153 (210)
+.
T Consensus 163 De 164 (295)
T KOG3886|consen 163 DE 164 (295)
T ss_pred hH
Confidence 53
No 305
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.26 E-value=1.1e-10 Score=90.59 Aligned_cols=81 Identities=21% Similarity=0.150 Sum_probs=55.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEecCCcch----hh
Q 028303 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES----FR 69 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~----~~ 69 (210)
|+++|.|++|||||+|+|++........+..+.+.....+.+.+. ...+.++|+||... ..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999998764443444454555555555442 12589999999432 11
Q ss_pred h---hhHHhhccccEEEEEEECC
Q 028303 70 S---ITRSYYRGAAGALLVYDIT 89 (210)
Q Consensus 70 ~---~~~~~~~~~d~~i~V~d~~ 89 (210)
. .....++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 2 2233467899999999873
No 306
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.25 E-value=3.1e-10 Score=91.26 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=85.4
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC----CCC-------------CCCCC---Cce-eEE---EEEEE-EECCEEEEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK----RFQ-------------PVHDL---TIG-VEF---GARMV-TIDGRPIKLQI 59 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~----~~~-------------~~~~~---~~~-~~~---~~~~~-~~~~~~~~~~i 59 (210)
-.+.|+|+|+.++|||||+++|.+. ... ..... +++ .-+ ....+ ..++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3588999999999999999999988 222 00111 111 111 11112 22455668889
Q ss_pred EecCCcchhhh-----------------------------hhHHhhc-cccEEEEEE-ECC--C---hhhHHHHHHHHHH
Q 028303 60 WDTAGQESFRS-----------------------------ITRSYYR-GAAGALLVY-DIT--R---RETFNHLSSWLED 103 (210)
Q Consensus 60 ~D~~G~~~~~~-----------------------------~~~~~~~-~~d~~i~V~-d~~--~---~~s~~~~~~~~~~ 103 (210)
+||+|...-.. -....+. .+|..++|. |.+ + ....+.-..++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999321111 1333444 789888888 764 1 1122333455666
Q ss_pred HHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCC
Q 028303 104 ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART 152 (210)
Q Consensus 104 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 152 (210)
+... ++|+++++|+.|.... ...+.+.++..+++++++.+|+..
T Consensus 176 Lk~~---~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 176 LKEL---NKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred HHhc---CCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHH
Confidence 6554 7999999999994221 133334455566788878787654
No 307
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=8.9e-11 Score=96.98 Aligned_cols=153 Identities=20% Similarity=0.216 Sum_probs=103.1
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCC-----------------------------CCCCCCCceeEEEEEEEEECCEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-----------------------------QPVHDLTIGVEFGARMVTIDGRPI 55 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 55 (210)
..++++|+|+..+|||||+-+|+...- ........+.+.......++-...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 458899999999999999999864310 011112234555555556666677
Q ss_pred EEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (210)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (210)
.++|.|+||+..|-.....-..++|+.++|+|++...- |+ ..+.....++... -..+||++||+|+.+-.+.
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCccHH
Confidence 89999999999999988888899999999999986321 11 1233333333332 3467888999998754444
Q ss_pred CHHHHHH----HHHH-c-----CCeEEEEecCCCCCHHHH
Q 028303 130 SKEEGEQ----FAKE-N-----GLLFLEASARTAQNVEEA 159 (210)
Q Consensus 130 ~~~~~~~----~~~~-~-----~~~~~~~sa~~~~~i~~~ 159 (210)
..+++.. |..+ - .+.|+++|+..|+|+-..
T Consensus 334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 4444443 3311 1 356999999999986544
No 308
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2e-10 Score=99.08 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=86.5
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCC-----CCC-----------CCCceeEEEEEEEEECCE-EEEEEEEecCCc
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-----PVH-----------DLTIGVEFGARMVTIDGR-PIKLQIWDTAGQ 65 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~ 65 (210)
.+..-+|.++|+-.+|||||..+++...-. ... ....+++........... .+.++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 456789999999999999999998643110 011 012244444444444444 588999999999
Q ss_pred chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
-+|.......++-+|++++|+|+..+-..+.-.-|+... . .++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~-~---~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD-K---YGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh-h---cCCCeEEEEECccccc
Confidence 999999999999999999999999875544444444333 2 3799999999999754
No 309
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.24 E-value=1e-10 Score=84.57 Aligned_cols=150 Identities=17% Similarity=0.105 Sum_probs=90.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEE-------------EEEEE----------------------
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA-------------RMVTI---------------------- 50 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~---------------------- 50 (210)
.+.|.|.|++|||||+|+.+++..-.......-.+.+.+. ..+.+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 4799999999999999999976542222111111111110 00000
Q ss_pred CCEEEEEEEEecCCcchhhhhhHHhhcccc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303 51 DGRPIKLQIWDTAGQESFRSITRSYYRGAA-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (210)
Q Consensus 51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d-~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (210)
......+.|++++|. . .....+.-.| .-|+|+|++.++.... +-...+. ..-++|+||.|+...-..
T Consensus 93 ~~~~~Dll~iEs~GN-L---~~~~sp~L~d~~~v~VidvteGe~~P~--K~gP~i~------~aDllVInK~DLa~~v~~ 160 (202)
T COG0378 93 DFPDLDLLFIESVGN-L---VCPFSPDLGDHLRVVVIDVTEGEDIPR--KGGPGIF------KADLLVINKTDLAPYVGA 160 (202)
T ss_pred cCCcCCEEEEecCcc-e---ecccCcchhhceEEEEEECCCCCCCcc--cCCCcee------EeeEEEEehHHhHHHhCc
Confidence 011134566666661 0 0111112234 8899999988753211 0000110 133799999999887777
Q ss_pred CHHHHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 130 SKEEGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 130 ~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
+.+...+-+++. +.+++++|.++|+|++++++++....
T Consensus 161 dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 161 DLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred cHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 777777766653 58899999999999999999987654
No 310
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.22 E-value=6.3e-10 Score=83.40 Aligned_cols=153 Identities=23% Similarity=0.210 Sum_probs=105.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch-------hhhhhHHhhcc
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-------FRSITRSYYRG 78 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 78 (210)
..+|+++|.|.+|||||+..++..........+.+.+..+..+.+++.+ +++.|.||.-+ ..+...+..+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEeec
Confidence 4689999999999999999999876655555555777777777888766 67899999321 12244556788
Q ss_pred ccEEEEEEECCChhhHHH-HHHHHHHHHhhcC------------------------------------------------
Q 028303 79 AAGALLVYDITRRETFNH-LSSWLEDARQHAN------------------------------------------------ 109 (210)
Q Consensus 79 ~d~~i~V~d~~~~~s~~~-~~~~~~~~~~~~~------------------------------------------------ 109 (210)
+|+++.|+|++..+.-.. +...+..+-.+..
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 999999999987543222 2222221111100
Q ss_pred -----------------CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 110 -----------------PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 110 -----------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
.-++++.|-||+| +++.++...++...+ -+.+|+..+.|++.+++.|-+.+
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHh
Confidence 1367777888888 577888888887655 34567788889888887765543
No 311
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.21 E-value=7.3e-10 Score=86.59 Aligned_cols=140 Identities=17% Similarity=0.227 Sum_probs=74.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC----------CCCceeEEEEEEEEECCEEEEEEEEecCCcch-------
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQES------- 67 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------- 67 (210)
..++|+|+|.+|+|||||+|.|++....... ..+.........+.-++..+.+.++||||...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999987543332 12333444444455577888999999999321
Q ss_pred -----------hhhhhH---------HhhccccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303 68 -----------FRSITR---------SYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (210)
Q Consensus 68 -----------~~~~~~---------~~~~~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (210)
+..... ..=..+|+++|.++.+... .-.++ ..++.. ...+++|.|+.|+|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di----~~mk~L-s~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI----EFMKRL-SKRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH----HHHHHH-TTTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH----HHHHHh-cccccEEeEEecccccCH
Confidence 011000 0012468999999986521 11222 222222 235899999999997432
Q ss_pred CCC--CHHHHHHHHHHcCCeEEEEe
Q 028303 127 RAV--SKEEGEQFAKENGLLFLEAS 149 (210)
Q Consensus 127 ~~~--~~~~~~~~~~~~~~~~~~~s 149 (210)
.+. -.+.+.+-+...++.+|...
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHHHHcCceeeccc
Confidence 111 11233444555677766533
No 312
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.1e-10 Score=87.71 Aligned_cols=175 Identities=17% Similarity=0.142 Sum_probs=113.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhC----------CCC----CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDK----------RFQ----PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (210)
.+.++|..+|+..-|||||..+++.- .+. .......+++.....+.++-.+..+...|+||+..|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 35699999999999999998887531 111 1111234556666555565555667889999999999
Q ss_pred hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEecCCCCCCCCC---CHHHHHHHHHHcCC--
Q 028303 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAHRRAV---SKEEGEQFAKENGL-- 143 (210)
Q Consensus 70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~-- 143 (210)
.....-..+.|+.|+|++++++.- ...+..+...++. ++|. ++++||+|+.++.+. -..+.+++...+++
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g 165 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG 165 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 888888889999999999998532 1222333333333 6755 456899999764332 23456777777764
Q ss_pred ---eEEEEecCC-CC---CHHHHHHHHHHHHHHHHhhccccccccC
Q 028303 144 ---LFLEASART-AQ---NVEEAFIKTAAKILQNIQEGALDAVNDS 182 (210)
Q Consensus 144 ---~~~~~sa~~-~~---~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 182 (210)
|++.-|+.. .+ .-.+-...|++.+-+..+....+.++|.
T Consensus 166 d~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dkPf 211 (394)
T COG0050 166 DDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDKPF 211 (394)
T ss_pred CCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcccccc
Confidence 466666553 12 2334445566667777776666655554
No 313
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3e-10 Score=91.11 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=85.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCC--C----------C-CC-------CCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKR--F----------Q-PV-------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~--~----------~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (210)
.-..+++-+|.+|||||..+|+--. . . .. ...-.++......+.++.....++|.||||+
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 3467899999999999999875210 0 0 00 0112256666666667777788999999999
Q ss_pred chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (210)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 127 (210)
+.|..-....+..+|..+.|+|+..+-- ....+.+...+. .++|++-++||.|...+.
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLFEVCRL---RDIPIFTFINKLDREGRD 149 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCcc-HHHHHHHHHHhh---cCCceEEEeeccccccCC
Confidence 9999999999999999999999987632 223334444333 489999999999976543
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.20 E-value=2.5e-10 Score=90.35 Aligned_cols=104 Identities=15% Similarity=0.049 Sum_probs=64.4
Q ss_pred EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHH
Q 028303 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 133 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 133 (210)
.+.+.|+||+|..... ......+|.++++.....+ +++..+...+. +.|.++++||+|+..........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence 4678899999854222 2346678888888554332 33433333332 46789999999986432211000
Q ss_pred ------HHHHHH---HcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 134 ------GEQFAK---ENGLLFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 134 ------~~~~~~---~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
...+.. .+..+++++|++++.|+++++++|.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 011111 12246899999999999999999988744
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.20 E-value=3.9e-10 Score=85.86 Aligned_cols=118 Identities=16% Similarity=0.190 Sum_probs=69.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCce-----e------EEEEEEEE------------------------
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-----V------EFGARMVT------------------------ 49 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-----~------~~~~~~~~------------------------ 49 (210)
....++|+|+.|+||||+++.+.+..+.+......+ . ......+.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 346899999999999999999998753322111110 0 00000010
Q ss_pred --------------ECC-EEEEEEEEecCCcch-------------hhhhhHHhhcc-ccEEEEEEECCChhhHHHHHHH
Q 028303 50 --------------IDG-RPIKLQIWDTAGQES-------------FRSITRSYYRG-AAGALLVYDITRRETFNHLSSW 100 (210)
Q Consensus 50 --------------~~~-~~~~~~i~D~~G~~~-------------~~~~~~~~~~~-~d~~i~V~d~~~~~s~~~~~~~ 100 (210)
+.+ ....+.++|+||... ...+...|+++ .+++++|+|+.....-.....+
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 000 013678999999632 11245567774 4599999998753322222222
Q ss_pred HHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 101 LEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 101 ~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
...+. ..+.|+++|+||.|..+
T Consensus 185 a~~ld---~~~~rti~ViTK~D~~~ 206 (240)
T smart00053 185 AKEVD---PQGERTIGVITKLDLMD 206 (240)
T ss_pred HHHHH---HcCCcEEEEEECCCCCC
Confidence 22222 23789999999999865
No 316
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.19 E-value=5e-11 Score=92.19 Aligned_cols=156 Identities=21% Similarity=0.179 Sum_probs=105.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc---------hhhhhhHHhh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE---------SFRSITRSYY 76 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~ 76 (210)
..-|.|+|.++||||||+++|++....+....+-+.+...+....+.++ .+.+.||.|.- .|+. .....
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~A-TLeeV 255 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQA-TLEEV 255 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHH-HHHHH
Confidence 4578999999999999999999777666655554555555555555544 46688999932 2222 33345
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe----EEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCC
Q 028303 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS----IMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART 152 (210)
Q Consensus 77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 152 (210)
..+|+++.|.|+++|.........+..+....-...| ++=|-||.|......... .++ .+.+|+++
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E--------~n~--~v~isalt 325 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE--------KNL--DVGISALT 325 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc--------cCC--cccccccc
Confidence 6789999999999997766655555555554322222 345667888654322211 112 56789999
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q 028303 153 AQNVEEAFIKTAAKILQNIQE 173 (210)
Q Consensus 153 ~~~i~~~~~~l~~~~~~~~~~ 173 (210)
|+|++++...+-..+.+...-
T Consensus 326 gdgl~el~~a~~~kv~~~t~~ 346 (410)
T KOG0410|consen 326 GDGLEELLKAEETKVASETTV 346 (410)
T ss_pred CccHHHHHHHHHHHhhhhhee
Confidence 999999999988887776553
No 317
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.15 E-value=2e-09 Score=91.24 Aligned_cols=120 Identities=15% Similarity=0.183 Sum_probs=72.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CceeEEEEEEEEECCEEEEEEEEecCCcchhh-------hh---h
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------SI---T 72 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~---~ 72 (210)
+..++|+|+|.+|+||||++|.|++......... ..+.........+++ ..+.++||||..... .+ .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 3468999999999999999999999864443221 222222222233444 468899999955321 11 1
Q ss_pred HHhhc--cccEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCC
Q 028303 73 RSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAH 125 (210)
Q Consensus 73 ~~~~~--~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~ 125 (210)
..++. .+|++++|..+........-..++..+....+ .-..+|||+|+.|...
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 12333 47999999987643222122234444443333 1246889999999864
No 318
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.6e-09 Score=87.25 Aligned_cols=155 Identities=17% Similarity=0.073 Sum_probs=105.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
.|+..|+-.-|||||++.+++.... +.....++.+... ...+.....+.++|.||++++-......+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~--~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGF--YYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeee--EeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 5788999999999999999976432 2233333344333 3344444478899999999999888888889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH---cCCeEEEEecCCCCCHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE---NGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~ 161 (210)
|++++++-..+.. +.+..+.... ....++|+||+|..+... ..+..++.... ...+++.+|+++++||+++-+
T Consensus 80 vV~~deGl~~qtg-EhL~iLdllg--i~~giivltk~D~~d~~r-~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMAQTG-EHLLILDLLG--IKNGIIVLTKADRVDEAR-IEQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcchhhH-HHHHHHHhcC--CCceEEEEeccccccHHH-HHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 9999765332222 2222222221 234589999999876431 11222233222 346789999999999999999
Q ss_pred HHHHHHH
Q 028303 162 KTAAKIL 168 (210)
Q Consensus 162 ~l~~~~~ 168 (210)
.|..+..
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9988875
No 319
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=9.7e-10 Score=92.18 Aligned_cols=116 Identities=19% Similarity=0.253 Sum_probs=84.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-----------------CceeEEEEEEEE---ECCEEEEEEEEecC
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----------------TIGVEFGARMVT---IDGRPIKLQIWDTA 63 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~i~D~~ 63 (210)
+...+|+++|+-.+|||+|+..|..+....-... ..++.....++- ..++.+-+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 4668999999999999999999987654332111 111111222221 25677789999999
Q ss_pred CcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCC
Q 028303 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123 (210)
Q Consensus 64 G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 123 (210)
|+-.|.......++.+|++++|+|+.++-.+..-+.....+. ...|+++|+||+|.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----ccCcEEEEEehhHH
Confidence 999999999999999999999999998876554433333332 36899999999996
No 320
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=8.2e-10 Score=82.32 Aligned_cols=163 Identities=20% Similarity=0.273 Sum_probs=98.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh---hhHHhhccccEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---ITRSYYRGAAGAL 83 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~~i 83 (210)
.+|+++|...|||||+-+.... +..+.......-+.....-.+.+..+.+.+||.||+-.+.. -....++.+-++|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFh-kMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeee-ccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 5699999999999997655443 33333222211111111122334556899999999865443 3456788999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEecCCCCCCC-C-CCHHHHH-----HHHH----HcCCeEEEEec
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRR-A-VSKEEGE-----QFAK----ENGLLFLEASA 150 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~-~-~~~~~~~-----~~~~----~~~~~~~~~sa 150 (210)
||+|+.+. ..+.+...-..+.+.. .+++.+=+++.|.|-..+. . .....+. ++++ ...+.|+.+|.
T Consensus 107 fvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 99999763 2233333322332222 2678888999999964321 1 1111111 1222 12344777777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh
Q 028303 151 RTAQNVEEAFIKTAAKILQNIQ 172 (210)
Q Consensus 151 ~~~~~i~~~~~~l~~~~~~~~~ 172 (210)
.+ ..+-+.|..+++.+.+++|
T Consensus 186 yD-HSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 186 YD-HSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred cc-hHHHHHHHHHHHHHhhhch
Confidence 65 7889999999999988877
No 321
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.1e-08 Score=81.17 Aligned_cols=84 Identities=21% Similarity=0.183 Sum_probs=60.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC----------------EEEEEEEEecCCcc---
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG----------------RPIKLQIWDTAGQE--- 66 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~--- 66 (210)
.++++++|.|++|||||+|.++.........|+.+++.......+.. ....+.++|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 36899999999999999999999886545555556666655544421 23468899999832
Q ss_pred ----hhhhhhHHhhccccEEEEEEECC
Q 028303 67 ----SFRSITRSYYRGAAGALLVYDIT 89 (210)
Q Consensus 67 ----~~~~~~~~~~~~~d~~i~V~d~~ 89 (210)
-.......-++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 22223445578999999999965
No 322
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.07 E-value=2.6e-09 Score=87.64 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=76.2
Q ss_pred EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhh----------HHHHHHHHHHHHhh-cCCCCeEEEEEecC
Q 028303 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET----------FNHLSSWLEDARQH-ANPNMSIMLVGNKC 121 (210)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s----------~~~~~~~~~~~~~~-~~~~~p~ivv~nK~ 121 (210)
....+.++|++|+...+..|..++..++++|||+++++.+. +.+....+..+... .-.+.|+|+++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 34568899999999999999999999999999999875321 22222333333222 11578999999999
Q ss_pred CCCC-----CC-------------CCCHHHHHHHHHHc------------CCeEEEEecCCCCCHHHHHHHHHHH
Q 028303 122 DLAH-----RR-------------AVSKEEGEQFAKEN------------GLLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 122 D~~~-----~~-------------~~~~~~~~~~~~~~------------~~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
|+.. .. ..+.+.+..++... .+.++.++|.+-.++..+|+.+.+-
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 9621 10 13345555554431 1235688888888898888887654
No 323
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.04 E-value=1.8e-09 Score=79.92 Aligned_cols=111 Identities=21% Similarity=0.114 Sum_probs=74.1
Q ss_pred hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcC
Q 028303 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENG 142 (210)
Q Consensus 68 ~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 142 (210)
+...+..+++.+|++++|+|+.++... |...+... ..+.|+++|+||+|+..... ..+....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 567888899999999999999875421 11122111 23679999999999864322 233333333 2233
Q ss_pred C---eEEEEecCCCCCHHHHHHHHHHHHHHHHhhccccccccCCcccccCCCCCCC
Q 028303 143 L---LFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPS 195 (210)
Q Consensus 143 ~---~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (210)
. .++++||+++.|++++++.|.+.+. .......+|.++.|+|+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~----------~~~~~~~~G~~nvGKSt 142 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK----------KGGDVYVVGATNVGKST 142 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh----------cCCcEEEEcCCCCCHHH
Confidence 2 5899999999999999999887763 11235566666655554
No 324
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=1.9e-09 Score=80.34 Aligned_cols=146 Identities=16% Similarity=0.216 Sum_probs=86.3
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCC---------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh-----
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP---------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----- 68 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----- 68 (210)
.-..++|+|+|.+|.|||||+|.|+...... ....|..+......+.-++..++++++||||..++
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence 3457899999999999999999997653322 23334455555555666778889999999993211
Q ss_pred -------------hh--------hhHHhhc--cccEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303 69 -------------RS--------ITRSYYR--GAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLA 124 (210)
Q Consensus 69 -------------~~--------~~~~~~~--~~d~~i~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (210)
.. .+...++ .+++.+|.+..+- .++..+. .++..+-. -+.+|-|+.|.|..
T Consensus 123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADTL 197 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeecccc
Confidence 11 1112222 3456666666653 2332222 12222222 35788889999963
Q ss_pred C--CCCCCHHHHHHHHHHcCCeEEEEecCCC
Q 028303 125 H--RRAVSKEEGEQFAKENGLLFLEASARTA 153 (210)
Q Consensus 125 ~--~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 153 (210)
. ++..-.+.+++-+..+++.+++--..+.
T Consensus 198 TleEr~~FkqrI~~el~~~~i~vYPq~~fde 228 (336)
T KOG1547|consen 198 TLEERSAFKQRIRKELEKHGIDVYPQDSFDE 228 (336)
T ss_pred cHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence 2 2222223455566667888776655543
No 325
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.03 E-value=1.5e-09 Score=84.33 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=40.8
Q ss_pred CeEEEEEecCCCCCCCCCCHHHHHHHHHH--cCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303 112 MSIMLVGNKCDLAHRRAVSKEEGEQFAKE--NGLLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 112 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
.+-++|+||+|+........+...+.++. ..++++++|+++++|+++++++|.++
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46699999999965333334444444443 35789999999999999999998764
No 326
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.99 E-value=1.7e-09 Score=77.46 Aligned_cols=94 Identities=15% Similarity=0.106 Sum_probs=63.6
Q ss_pred hhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEE
Q 028303 69 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEA 148 (210)
Q Consensus 69 ~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (210)
..+.....+++|++++|+|+.++....+. .+...+. ..+.|+++|+||+|+.+... ......+....+.+++++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~i 76 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVYV 76 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEEE
Confidence 45667788889999999999876432221 1112121 13689999999999853211 111112333456789999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 028303 149 SARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 149 sa~~~~~i~~~~~~l~~~~~ 168 (210)
|++++.|++++++.|.+.+.
T Consensus 77 Sa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 77 SAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EccccccHHHHHHHHHHHHh
Confidence 99999999999998877664
No 327
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.99 E-value=4.7e-09 Score=82.86 Aligned_cols=146 Identities=16% Similarity=0.251 Sum_probs=87.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh----
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---- 70 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---- 70 (210)
..++|+++|+.|+|||||+|.|++...... ..++.....+...+.-++..+.++++||||..++-.
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 468999999999999999999998733222 223444555555555677888999999999321111
Q ss_pred ----------hhHHh------------h--ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303 71 ----------ITRSY------------Y--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (210)
Q Consensus 71 ----------~~~~~------------~--~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (210)
....| + ..+|+++|.+..+.. .+..+. +..+... ...+.+|-|+.|+|....
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~D--Ie~Mk~l-s~~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLD--IEAMKRL-SKRVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHH--HHHHHHH-hcccCeeeeeeccccCCH
Confidence 01111 1 135788888876642 111111 1112222 235788999999997432
Q ss_pred CC--CCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303 127 RA--VSKEEGEQFAKENGLLFLEASARTAQNV 156 (210)
Q Consensus 127 ~~--~~~~~~~~~~~~~~~~~~~~sa~~~~~i 156 (210)
.+ .-.+.+.+....+++++|. ..+.+.-
T Consensus 178 ~El~~~K~~I~~~i~~~nI~vf~--pyd~e~~ 207 (373)
T COG5019 178 DELAEFKERIREDLEQYNIPVFD--PYDPEDD 207 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCceeC--CCCcccc
Confidence 22 2223455666677888875 3454443
No 328
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=7.4e-09 Score=82.24 Aligned_cols=144 Identities=17% Similarity=0.241 Sum_probs=85.1
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCC---------CCCCceeEEEEEEEEECCEEEEEEEEecCCcchh-------
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF------- 68 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------- 68 (210)
..++++++|+.|.|||||+|.|+...+... ...+.........+.-++..++++++||||..+.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 458999999999999999999987754432 1123344444444555778889999999993211
Q ss_pred -----------hh-------hhHHhhc--cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303 69 -----------RS-------ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (210)
Q Consensus 69 -----------~~-------~~~~~~~--~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (210)
+. +....+. .+|+.+|.+..+-. .+..+. +..+.. ....+.+|-|+.|+|......
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~-l~~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKK-LSKKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHH-HhccccccceeeccccCCHHH
Confidence 11 1112222 56788888876542 111111 111111 123678999999999754222
Q ss_pred --CCHHHHHHHHHHcCCeEEEEecCC
Q 028303 129 --VSKEEGEQFAKENGLLFLEASART 152 (210)
Q Consensus 129 --~~~~~~~~~~~~~~~~~~~~sa~~ 152 (210)
.-...+.+-+...++++|......
T Consensus 176 l~~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 176 LNQFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred HHHHHHHHHHHHHHcCcceecCCCCc
Confidence 122334555566677766554443
No 329
>PRK12289 GTPase RsgA; Reviewed
Probab=98.93 E-value=3e-09 Score=85.50 Aligned_cols=91 Identities=23% Similarity=0.238 Sum_probs=66.0
Q ss_pred hhHHhhccccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEe
Q 028303 71 ITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS 149 (210)
Q Consensus 71 ~~~~~~~~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (210)
+....+.++|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+|+..... .+.....+...+++++++|
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~iS 156 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFIS 156 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEEE
Confidence 4445688999999999998865 33455666655432 3789999999999854221 1222334456788899999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 028303 150 ARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 150 a~~~~~i~~~~~~l~~~ 166 (210)
++++.|++++++.|...
T Consensus 157 A~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 157 VETGIGLEALLEQLRNK 173 (352)
T ss_pred cCCCCCHHHHhhhhccc
Confidence 99999999999888643
No 330
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.91 E-value=7.7e-09 Score=85.19 Aligned_cols=164 Identities=19% Similarity=0.331 Sum_probs=117.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
+.+|+.++|..++|||+|+++++...+.....+. +-. ...++.+++....+.+.|.+|... ..+...+|++||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~-~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGR-FKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCc-Ccc-ceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 4589999999999999999999988876654443 222 334455777777788889888332 345567999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCC--CCCCCHHHHHHHHHH-cCCeEEEEecCCCCCHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAH--RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~~ 160 (210)
||.+.+..+++.+..+...+.... ...+|+++++++.-... .+.+...++++++.. ..+.+|+..+..|.++..+|
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 999999888888877665554332 24688888887765432 223334445544444 45779999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 028303 161 IKTAAKILQNIQEGA 175 (210)
Q Consensus 161 ~~l~~~~~~~~~~~~ 175 (210)
+.+..++........
T Consensus 182 ~~~~~k~i~~~~~qq 196 (749)
T KOG0705|consen 182 QEVAQKIVQLRKYQQ 196 (749)
T ss_pred HHHHHHHHHHHhhhh
Confidence 998888877655443
No 331
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.6e-08 Score=79.08 Aligned_cols=175 Identities=20% Similarity=0.146 Sum_probs=119.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhC----------CCCC----CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDK----------RFQP----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (210)
.+.++|.-+|+..-|||||-.+++.- ++.+ ......+++....++.++-....+.-.|+||+.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 35689999999999999998777531 1111 112245677777777776666677788999999999
Q ss_pred hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC---CCHHHHHHHHHHcC----
Q 028303 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA---VSKEEGEQFAKENG---- 142 (210)
Q Consensus 70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~---- 142 (210)
.....-..+.|+.|+|+.++|+.- ...+..+...++..- ..+++++||.|+.++.+ .-.-+++++...++
T Consensus 132 KNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd 208 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD 208 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 888878889999999999999642 233444444444421 35677799999974332 22345677777765
Q ss_pred -CeEEEEecC---CC----CCHHHHHHHHHHHHHHHHhhccccccccC
Q 028303 143 -LLFLEASAR---TA----QNVEEAFIKTAAKILQNIQEGALDAVNDS 182 (210)
Q Consensus 143 -~~~~~~sa~---~~----~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 182 (210)
+|++.-||. .+ .+. +....|++.+-+.++....+.+.+.
T Consensus 209 ~~PvI~GSAL~ALeg~~peig~-~aI~kLldavDsyip~P~R~~~~pF 255 (449)
T KOG0460|consen 209 NTPVIRGSALCALEGRQPEIGL-EAIEKLLDAVDSYIPTPERDLDKPF 255 (449)
T ss_pred CCCeeecchhhhhcCCCccccH-HHHHHHHHHHhccCCCcccccCCCc
Confidence 467776654 33 233 4466677788888887777777665
No 332
>PRK12288 GTPase RsgA; Reviewed
Probab=98.90 E-value=7e-09 Score=83.39 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=66.3
Q ss_pred hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC-CCHHHHHHHHHHcCCeEEEEecCCCC
Q 028303 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAKENGLLFLEASARTAQ 154 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~ 154 (210)
..++|.+++|++.....++..+..|+..+.. .++|+++|+||+|+..... ....+....+...+.+++++|++++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4568999999999887888888888765543 3689999999999964321 11223334455678899999999999
Q ss_pred CHHHHHHHHHH
Q 028303 155 NVEEAFIKTAA 165 (210)
Q Consensus 155 ~i~~~~~~l~~ 165 (210)
|++++++.|..
T Consensus 195 GideL~~~L~~ 205 (347)
T PRK12288 195 GLEELEAALTG 205 (347)
T ss_pred CHHHHHHHHhh
Confidence 99999988864
No 333
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.87 E-value=2e-09 Score=81.67 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=63.5
Q ss_pred EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028303 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 134 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 134 (210)
+.+.|++|.|-..... ....-+|.+++|....-++..+.++.=+.++ .-++|+||.|.+... ....+.
T Consensus 122 ~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNKaD~~gA~-~~~~~l 189 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNKADRPGAD-RTVRDL 189 (266)
T ss_dssp -SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE--SHHHHH-HHHHHH
T ss_pred CCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeCCChHHHH-HHHHHH
Confidence 5577888876322211 2356789999999987776655544333222 338999999953211 111222
Q ss_pred HHHHHH-------cCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 028303 135 EQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173 (210)
Q Consensus 135 ~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 173 (210)
+..... +..+++.+||.++.|++++.+.|.++.......
T Consensus 190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~s 235 (266)
T PF03308_consen 190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKES 235 (266)
T ss_dssp HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 222221 235799999999999999999988766555444
No 334
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.84 E-value=4.4e-08 Score=75.56 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=67.8
Q ss_pred EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHH
Q 028303 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 133 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 133 (210)
.+.+.|++|.|-..... ....-+|.+++|.-..-++..+.++.=+.++ --|+|+||.|..... ....+
T Consensus 143 G~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vINKaD~~~A~-~a~r~ 210 (323)
T COG1703 143 GYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVINKADRKGAE-KAARE 210 (323)
T ss_pred CCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEeccChhhHH-HHHHH
Confidence 45678888877432222 2345688888888776666655555433332 237999999953311 11111
Q ss_pred ---HHHHHH------HcCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhhc
Q 028303 134 ---GEQFAK------ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174 (210)
Q Consensus 134 ---~~~~~~------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 174 (210)
+.++.. .+.-+++.+||..++|++++++.+.++....-..+
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg 260 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG 260 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence 111111 12356999999999999999999888776655544
No 335
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.83 E-value=2.4e-08 Score=78.55 Aligned_cols=87 Identities=18% Similarity=0.128 Sum_probs=66.2
Q ss_pred HHhhccccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecC
Q 028303 73 RSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR 151 (210)
Q Consensus 73 ~~~~~~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 151 (210)
...+.++|.+++|+|+.++. ++..+..|+..+... ++|+++|+||+|+.+... .......+...+.+++++|++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence 34578899999999999887 777777777766543 689999999999965311 112233445567899999999
Q ss_pred CCCCHHHHHHHHH
Q 028303 152 TAQNVEEAFIKTA 164 (210)
Q Consensus 152 ~~~~i~~~~~~l~ 164 (210)
++.|+++++..|.
T Consensus 148 ~g~gi~~L~~~L~ 160 (287)
T cd01854 148 TGEGLDELREYLK 160 (287)
T ss_pred CCccHHHHHhhhc
Confidence 9999999888765
No 336
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.82 E-value=1.5e-08 Score=76.51 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=51.9
Q ss_pred EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCCh-------hhHHHHHHHHHHHHhhc----CCCCeEEEEEecC
Q 028303 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR-------ETFNHLSSWLEDARQHA----NPNMSIMLVGNKC 121 (210)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~-------~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~ 121 (210)
..+.++++|.+|+...+..|..++..+.++|||+..+.. .+-..++..++.+.... -..+.+|+++||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 346799999999999999999999999999999988752 12233333333222221 2467899999999
Q ss_pred CC
Q 028303 122 DL 123 (210)
Q Consensus 122 D~ 123 (210)
|+
T Consensus 280 Dl 281 (379)
T KOG0099|consen 280 DL 281 (379)
T ss_pred HH
Confidence 97
No 337
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.81 E-value=2.6e-08 Score=80.82 Aligned_cols=112 Identities=24% Similarity=0.260 Sum_probs=77.6
Q ss_pred cchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHH----HHHH
Q 028303 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ----FAKE 140 (210)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~ 140 (210)
.+.|..+...+.+.++++++|+|+.+... .|...+..... +.|+++|+||+|+.... ...+.+.+ ++..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~-~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVG-GNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhC-CCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence 56788888888899999999999977542 23333333322 57999999999986432 33344443 4555
Q ss_pred cCC---eEEEEecCCCCCHHHHHHHHHHHHHHHHhhccccccccCCcccccCCCCCC
Q 028303 141 NGL---LFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGP 194 (210)
Q Consensus 141 ~~~---~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (210)
.++ .++++||+++.|++++++.|.+.. + ......+|.++.|+|
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~-----~------~~~v~~vG~~nvGKS 168 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKAR-----N------KKDVYVVGVTNVGKS 168 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHHh-----C------CCeEEEECCCCCCHH
Confidence 665 489999999999999999986541 1 124667777776654
No 338
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.80 E-value=1.5e-08 Score=71.40 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=39.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (210)
+++++|.+|+|||||+|+|.+......... .+.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSAT-PGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCC-CCcccceEEEEeCC---CEEEEECCCc
Confidence 799999999999999999998876533222 23344444455554 4679999995
No 339
>PRK00098 GTPase RsgA; Reviewed
Probab=98.79 E-value=2.7e-08 Score=78.71 Aligned_cols=85 Identities=21% Similarity=0.182 Sum_probs=63.1
Q ss_pred hhccccEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCC
Q 028303 75 YYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA 153 (210)
Q Consensus 75 ~~~~~d~~i~V~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 153 (210)
.+.++|++++|+|+.++.+... +..|+..+.. .++|+++|+||+|+.+... ...+....+...+.+++++|++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4689999999999988765444 4556555543 3789999999999953221 122344556667889999999999
Q ss_pred CCHHHHHHHH
Q 028303 154 QNVEEAFIKT 163 (210)
Q Consensus 154 ~~i~~~~~~l 163 (210)
.|++++++.|
T Consensus 153 ~gi~~L~~~l 162 (298)
T PRK00098 153 EGLDELKPLL 162 (298)
T ss_pred ccHHHHHhhc
Confidence 9999998876
No 340
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.79 E-value=3.3e-08 Score=70.75 Aligned_cols=112 Identities=18% Similarity=0.084 Sum_probs=66.6
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 028303 80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159 (210)
Q Consensus 80 d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 159 (210)
|++++|+|+.++.+.... ++.. ......+.|+++|+||+|+...... .+....+.......++.+|++++.+++++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 789999999887654322 2221 1112236899999999998532110 01111222233556899999999999999
Q ss_pred HHHHHHHHHHHHhhccccc--cccC-CcccccCCCCCCC
Q 028303 160 FIKTAAKILQNIQEGALDA--VNDS-GIKVGYGRGQGPS 195 (210)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~ 195 (210)
++.+.+............. .... ...+|-+..|+++
T Consensus 77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKst 115 (155)
T cd01849 77 ESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSS 115 (155)
T ss_pred HHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHH
Confidence 9998876543332221111 1112 5567777766655
No 341
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.77 E-value=3.9e-08 Score=74.23 Aligned_cols=84 Identities=19% Similarity=0.146 Sum_probs=56.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc-------hhhhhhHHhhccc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-------SFRSITRSYYRGA 79 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~~~~~~~~~ 79 (210)
.+|.++|.|.+||||++..+.+...........+.+.....+.+.+ .++++.|.||.- -.........+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4899999999999999999998765444333334333333333444 357899999932 1122444567789
Q ss_pred cEEEEEEECCChh
Q 028303 80 AGALLVYDITRRE 92 (210)
Q Consensus 80 d~~i~V~d~~~~~ 92 (210)
+++++|+|+..|-
T Consensus 138 nli~~vld~~kp~ 150 (358)
T KOG1487|consen 138 NLIFIVLDVLKPL 150 (358)
T ss_pred cEEEEEeeccCcc
Confidence 9999999986653
No 342
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.75 E-value=3e-08 Score=72.07 Aligned_cols=55 Identities=27% Similarity=0.350 Sum_probs=39.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 64 (210)
.++++|+|.||+|||||+|+|.+......... .+.+.....+.++. .+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~-pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGAT-PGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCC-CCeEcceEEEEeCC---CEEEEECcC
Confidence 47999999999999999999998765443332 24444444444432 477999998
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.74 E-value=4.3e-08 Score=70.30 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=38.4
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 64 (210)
..++|+++|.+|+|||||+|+|.+.........+ +.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~-g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP-GETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC-CeeEeEEEEEcCC---CEEEEECcC
Confidence 3578999999999999999999987654433322 3333333333332 256999998
No 344
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.70 E-value=9.8e-08 Score=76.78 Aligned_cols=83 Identities=20% Similarity=0.099 Sum_probs=60.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCceeEEEEEEEEECCE---------------EEEEEEEecCCcch---
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES--- 67 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~--- 67 (210)
++++++|.|++|||||++.|++... .....+..+.......+.+++. ...+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999876 4444454455555555555442 23678999999432
Q ss_pred ----hhhhhHHhhccccEEEEEEECC
Q 028303 68 ----FRSITRSYYRGAAGALLVYDIT 89 (210)
Q Consensus 68 ----~~~~~~~~~~~~d~~i~V~d~~ 89 (210)
........++.+|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2224455678999999999984
No 345
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=2.5e-07 Score=73.32 Aligned_cols=122 Identities=16% Similarity=0.252 Sum_probs=80.1
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc-eeEEEEEEEE------ECCEE---------------------
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-GVEFGARMVT------IDGRP--------------------- 54 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~--------------------- 54 (210)
++...-|+++|+=..||||||+.|+...++.....+. +++.....+. ++|..
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 4456779999999999999999999998865433321 1111111111 11111
Q ss_pred ------------EEEEEEecCCcc-----------hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCC
Q 028303 55 ------------IKLQIWDTAGQE-----------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN 111 (210)
Q Consensus 55 ------------~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~ 111 (210)
-.++++||||.- .|.....-++..+|.+|++||+..-+--++....+..++.+ .
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---E 211 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---E 211 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---c
Confidence 147899999921 33345666788999999999998766555555555555544 3
Q ss_pred CeEEEEEecCCCCCCC
Q 028303 112 MSIMLVGNKCDLAHRR 127 (210)
Q Consensus 112 ~p~ivv~nK~D~~~~~ 127 (210)
-.+-||+||.|..+..
T Consensus 212 dkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDTQ 227 (532)
T ss_pred ceeEEEeccccccCHH
Confidence 4577889999976533
No 346
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.6e-08 Score=78.02 Aligned_cols=166 Identities=18% Similarity=0.202 Sum_probs=104.1
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCC---CCCC--CCCCceeEEEEEE-EE-------------------------
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKR---FQPV--HDLTIGVEFGARM-VT------------------------- 49 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~---~~~~--~~~~~~~~~~~~~-~~------------------------- 49 (210)
|+.+-+++|.-+|+...||||+++++.+-. |-.+ ...|...-+.... +.
T Consensus 33 isRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c 112 (466)
T KOG0466|consen 33 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPC 112 (466)
T ss_pred hhheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCc
Confidence 355678999999999999999999986531 1110 0011100000000 00
Q ss_pred ----ECCE---EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCC
Q 028303 50 ----IDGR---PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (210)
Q Consensus 50 ----~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (210)
..++ -..+.+.|+||++.......+-..-.|+.++++..++.-.-....+.+..+.... -..++++-||+|
T Consensus 113 ~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiD 190 (466)
T KOG0466|consen 113 DRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKID 190 (466)
T ss_pred ccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhh
Confidence 0110 1257899999999877766666666899999988776322222233333332221 247889999999
Q ss_pred CCCCCCC--CHHHHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 123 LAHRRAV--SKEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 123 ~~~~~~~--~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
+..+.+. ..+++..|... .++|++++||.-..|++-+.++|.+.+.
T Consensus 191 li~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 191 LIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 9654432 23445556554 3578999999999999999998877654
No 347
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.68 E-value=8.9e-08 Score=69.69 Aligned_cols=121 Identities=13% Similarity=0.017 Sum_probs=72.3
Q ss_pred hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 028303 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL 146 (210)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 146 (210)
.........+.++|++++|+|+.++....+. .+...+ .+.|+++|+||+|+.+... .....++.......++
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi 79 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVL 79 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEE
Confidence 3344556778899999999999876432211 111111 2568999999999853211 1122233334445689
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHhhccc--cccccCCcccccCCCCCCC
Q 028303 147 EASARTAQNVEEAFIKTAAKILQNIQEGAL--DAVNDSGIKVGYGRGQGPS 195 (210)
Q Consensus 147 ~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 195 (210)
.+|++++.|++++.+.+...+....+.... .........+|.+..|+++
T Consensus 80 ~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKst 130 (171)
T cd01856 80 FVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKST 130 (171)
T ss_pred EEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHH
Confidence 999999999999999988776432221111 1111124556666655544
No 348
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.67 E-value=7.8e-08 Score=73.32 Aligned_cols=155 Identities=16% Similarity=0.096 Sum_probs=92.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CceeEEEEEEEEECCEEEEEEEEecCC----------cchhhhhh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSIT 72 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 72 (210)
+..+.++++|.+++|||||++.++..+....... ..+.+.....+.+.. .+.+.|.|| .+++....
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHhH
Confidence 3458999999999999999999987765443333 445555555555554 456889999 23444455
Q ss_pred HHhhcccc---EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC----CCHHHHHH-------HH
Q 028303 73 RSYYRGAA---GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA----VSKEEGEQ-------FA 138 (210)
Q Consensus 73 ~~~~~~~d---~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~-------~~ 138 (210)
..|+.+-+ -+++.+|++.+..-.+.. .++.+.+ .++|+.+|+||+|...... -....+.. ..
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~~-~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~ 286 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTDNP-EIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV 286 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCChH-HHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence 55554332 566677776543211111 1112222 3899999999999742111 00011111 11
Q ss_pred HHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303 139 KENGLLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 139 ~~~~~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
.....+++.+|+.++.|++.++-.+.+
T Consensus 287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 287 FLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred eeccCCceeeecccccCceeeeeehhh
Confidence 122345677999999999888765544
No 349
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1e-07 Score=81.37 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=84.2
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCC--------------CCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRF--------------QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (210)
..+..-+|+++.+...|||||...|....- ..+...+.+++.....+..-.+.+.+.++|+||+-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 445677899999999999999999975421 111222334444444444555678899999999999
Q ss_pred hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCC
Q 028303 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123 (210)
Q Consensus 68 ~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 123 (210)
|.+......+-+|+.++++|+..+.-.+...- +++..-.+..+++|+||+|.
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~~v----lrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAV----LRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHHHH----HHHHHHccCceEEEEehhhh
Confidence 99999999999999999999988654333222 22222235678899999994
No 350
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.67 E-value=1.7e-07 Score=73.38 Aligned_cols=125 Identities=15% Similarity=0.140 Sum_probs=75.2
Q ss_pred CCcc-hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc
Q 028303 63 AGQE-SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 141 (210)
Q Consensus 63 ~G~~-~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 141 (210)
||+- .........+..+|++++|+|+..+.+..+. ++..+. .+.|+++|+||+|+.+... .....+.+...
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHHc
Confidence 4442 2334556678899999999999876543221 111111 2579999999999853211 11222233334
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHHHHhhcccc---ccccCCcccccCCCCCCC
Q 028303 142 GLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD---AVNDSGIKVGYGRGQGPS 195 (210)
Q Consensus 142 ~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 195 (210)
+.+++.+|++++.++.++.+.|.+.+.......... ...-....+|.++.|+|+
T Consensus 77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSs 133 (276)
T TIGR03596 77 GIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKST 133 (276)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHH
Confidence 567899999999999999988877765443221111 111125666777765554
No 351
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.66 E-value=1e-07 Score=68.34 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=65.4
Q ss_pred HhhccccEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecC
Q 028303 74 SYYRGAAGALLVYDITRRET--FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR 151 (210)
Q Consensus 74 ~~~~~~d~~i~V~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 151 (210)
..+..+|++++|+|+.++.. ...+..++ .. ...+.|+++|+||+|+...... ......+........+.+|++
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYL---KK-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHH---Hh-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence 34678999999999998643 22222222 22 2335899999999998532210 111222222222335789999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccccccCCcccccCCCCCCC
Q 028303 152 TAQNVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPS 195 (210)
Q Consensus 152 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (210)
.+.+++++++.|.+.... ... ........+|.++.|+|+
T Consensus 79 ~~~~~~~L~~~l~~~~~~-~~~----~~~~~v~~~G~~nvGKSt 117 (157)
T cd01858 79 NPFGKGSLIQLLRQFSKL-HSD----KKQISVGFIGYPNVGKSS 117 (157)
T ss_pred ccccHHHHHHHHHHHHhh-hcc----ccceEEEEEeCCCCChHH
Confidence 999999999988765331 110 001113356777766654
No 352
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=9.9e-07 Score=74.79 Aligned_cols=143 Identities=20% Similarity=0.187 Sum_probs=85.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEE--------------------------------------
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR-------------------------------------- 46 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 46 (210)
...||++.|..++||||++|+++..+.-+......+.-+...
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 468999999999999999999987665444333221111100
Q ss_pred -----EEEECCEE-----EEEEEEecCCc---chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe
Q 028303 47 -----MVTIDGRP-----IKLQIWDTAGQ---ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS 113 (210)
Q Consensus 47 -----~~~~~~~~-----~~~~i~D~~G~---~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p 113 (210)
.+.++... -.+.+.|.||- .+...-.......+|++|||..+.+.-+.... .++..... .+..
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~---~Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE---EKPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc---cCCc
Confidence 01111110 14578899994 45556677788899999999999876443332 23333322 2445
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHcCC--------eEEEEecC
Q 028303 114 IMLVGNKCDLAHRRAVSKEEGEQFAKENGL--------LFLEASAR 151 (210)
Q Consensus 114 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~sa~ 151 (210)
++|+.||+|.....+...++++.-..++.+ .+|+||++
T Consensus 264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 666678889865544444444333223221 37888855
No 353
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.66 E-value=3.1e-07 Score=73.13 Aligned_cols=158 Identities=16% Similarity=0.114 Sum_probs=94.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--------------CceeEEEEEEEEECC------------------
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--------------TIGVEFGARMVTIDG------------------ 52 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~------------------ 52 (210)
..+.+.+.|+.+.|||||+-.|.-.....-.-. ..+.+.+...+-+++
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v 195 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV 195 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence 458899999999999999888865433221111 111122222222221
Q ss_pred ---EEEEEEEEecCCcchhhhh--hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303 53 ---RPIKLQIWDTAGQESFRSI--TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (210)
Q Consensus 53 ---~~~~~~i~D~~G~~~~~~~--~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 127 (210)
.+--+.+.||.|++.|-+. ....-.+.|..++|+.++++.+.- .+..+-.+... +.|+|+++||+|+..+.
T Consensus 196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a~---~lPviVvvTK~D~~~dd 271 (527)
T COG5258 196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALAM---ELPVIVVVTKIDMVPDD 271 (527)
T ss_pred hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhhh---cCCEEEEEEecccCcHH
Confidence 1234789999999988763 444557899999999999875421 12222222222 79999999999985432
Q ss_pred CC--CHHHHHHHHH----------------------Hc---CCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 128 AV--SKEEGEQFAK----------------------EN---GLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 128 ~~--~~~~~~~~~~----------------------~~---~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
.. ..+++....+ +. -+|+|.+|+-+++|.+- ++.+..++
T Consensus 272 r~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl-L~e~f~~L 337 (527)
T COG5258 272 RFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL-LDEFFLLL 337 (527)
T ss_pred HHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH-HHHHHHhC
Confidence 11 1122222111 11 25799999999999954 33333333
No 354
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.64 E-value=1.7e-07 Score=73.32 Aligned_cols=85 Identities=20% Similarity=0.143 Sum_probs=63.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC---------------EEEEEEEEecCCcc---
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG---------------RPIKLQIWDTAGQE--- 66 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~--- 66 (210)
..++++++|.|++|||||+|.|++....+...|..+++.....+.+.. ....++++|++|.-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 457999999999999999999999988877777777777666555532 23478999999832
Q ss_pred -hhhh---hhHHhhccccEEEEEEECC
Q 028303 67 -SFRS---ITRSYYRGAAGALLVYDIT 89 (210)
Q Consensus 67 -~~~~---~~~~~~~~~d~~i~V~d~~ 89 (210)
.-.. -...-++.+|+++-|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 1122 3344568899999999864
No 355
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.62 E-value=1.3e-07 Score=68.87 Aligned_cols=57 Identities=26% Similarity=0.372 Sum_probs=40.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (210)
..++++++|.+++|||||+++|.+..+.... ...+.+.....+.++ ..+.+|||||-
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3478999999999999999999987764322 222344444444444 34679999994
No 356
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.61 E-value=7.1e-06 Score=57.94 Aligned_cols=147 Identities=18% Similarity=0.179 Sum_probs=77.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecC-Cc-----------------
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA-GQ----------------- 65 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~----------------- 65 (210)
...++|++.|+||+||||++.++.+.-....+.- .-+....+.-+++..-|.+.|+. |.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv---gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKV---GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCcee---eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 3468999999999999999999885533222211 12222334456666667777765 31
Q ss_pred ----chhhh----hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH
Q 028303 66 ----ESFRS----ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137 (210)
Q Consensus 66 ----~~~~~----~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 137 (210)
+.+.. .....++.+|++| +|---+- ......+...+....+.+.|+|.++.+.+. ....+ .
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpM-Elks~~f~~~ve~vl~~~kpliatlHrrsr----~P~v~----~ 148 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPM-ELKSKKFREAVEEVLKSGKPLIATLHRRSR----HPLVQ----R 148 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccch-hhccHHHHHHHHHHhcCCCcEEEEEecccC----ChHHH----H
Confidence 11111 1223334456544 4532211 111234445555555567898888877653 11112 2
Q ss_pred HHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 138 AKENGLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 138 ~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
+...+..+++ .+.+|-+.++..++..+
T Consensus 149 ik~~~~v~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 149 IKKLGGVYVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred hhhcCCEEEE---EccchhhHHHHHHHHHh
Confidence 2333333333 35555557777766654
No 357
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.59 E-value=1.9e-07 Score=73.11 Aligned_cols=57 Identities=28% Similarity=0.450 Sum_probs=40.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (210)
..++++|+|.+|+|||||+|+|.+......... .+.+.....+.++. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~-~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNR-PGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeecceEEEEeCC---CEEEEECCCc
Confidence 458899999999999999999998765443322 23444444455543 4679999996
No 358
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.58 E-value=2.9e-06 Score=70.53 Aligned_cols=134 Identities=20% Similarity=0.327 Sum_probs=84.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC------Cc--------------------------------------
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TI-------------------------------------- 39 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~-------------------------------------- 39 (210)
++..+|+|+|+..+||||.+..+......+-... +.
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 5678999999999999999998865432221110 00
Q ss_pred --------eeEEEEE--EEEECCEEE-EEEEEecCC-------------cchhhhhhHHhhccccEEEEEEECCChhhHH
Q 028303 40 --------GVEFGAR--MVTIDGRPI-KLQIWDTAG-------------QESFRSITRSYYRGAAGALLVYDITRRETFN 95 (210)
Q Consensus 40 --------~~~~~~~--~~~~~~~~~-~~~i~D~~G-------------~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~ 95 (210)
+.+.+.. .+.+.|-.+ +..+.|.|| .+....+...+..+.+++|+++--- |.+
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVD 462 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVD 462 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---Ccc
Confidence 1122211 122322222 567899999 2334456778889999999998421 122
Q ss_pred HHHHHH-HHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028303 96 HLSSWL-EDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE 140 (210)
Q Consensus 96 ~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 140 (210)
.-+... ..+......+...|+|+||+|+.+....+...++++...
T Consensus 463 AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred hhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence 222222 223334446788999999999988777777888887764
No 359
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.58 E-value=2.7e-07 Score=72.71 Aligned_cols=58 Identities=26% Similarity=0.391 Sum_probs=41.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 66 (210)
..++++|+|.+|+|||||+|+|.+........ ..+.+.....+.++. .+.++||||--
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 45899999999999999999999876544322 224444444454443 46799999953
No 360
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.57 E-value=2.5e-07 Score=66.22 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=38.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 64 (210)
...+++++|.+++|||||+++|.+..... ..++.+.+.....+..+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 35788999999999999999999765332 233334444333333333 578999998
No 361
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=8.7e-08 Score=76.93 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=89.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCC--------CCCCC--------CCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKR--------FQPVH--------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (210)
-+|.++.+-.+||||...|++.-. ..... ....+++.....+.++.+..++.++||||+-.|.-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 478999999999999988875321 11111 11236778888888899999999999999999999
Q ss_pred hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 71 ~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
....+++-.|+++.|||.+.+..-+.+.-|++ ..+.++|-+.++||+|...
T Consensus 118 everclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence 99999999999999999998755455555543 3345899999999999743
No 362
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.57 E-value=3.5e-07 Score=72.04 Aligned_cols=126 Identities=14% Similarity=0.131 Sum_probs=77.1
Q ss_pred cCCcc-hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028303 62 TAGQE-SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE 140 (210)
Q Consensus 62 ~~G~~-~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 140 (210)
.||+- .........+..+|++++|+|+.++.+..+ .++..... +.|+++|+||+|+.+... .+...+++..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----NKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 35543 223345667789999999999987654322 11222211 579999999999853211 1222233334
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhhcc-ccccc--cCCcccccCCCCCCC
Q 028303 141 NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA-LDAVN--DSGIKVGYGRGQGPS 195 (210)
Q Consensus 141 ~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~ 195 (210)
.+.+++.+|++++.+++++.+.+.+.+........ ..... -..+.+|.++.|+|+
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSs 136 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKST 136 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHH
Confidence 45778999999999999999888777654432111 11111 126677888766654
No 363
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.56 E-value=1.5e-07 Score=69.58 Aligned_cols=55 Identities=22% Similarity=0.310 Sum_probs=38.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCC-------CCCCCceeEEEEEEEEECCEEEEEEEEecCC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 64 (210)
.+++++|.+|+|||||+|+|.+..... ......+++.....+.++. .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 579999999999999999999864321 1112224555555555543 467999999
No 364
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.52 E-value=1.3e-06 Score=80.82 Aligned_cols=112 Identities=20% Similarity=0.253 Sum_probs=68.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCC------CCCceeEEEEEEEEECCEEEEEEEEecCCcc--------hhhhhhHH
Q 028303 9 YIIIGDTGVGKSCLLLQFTDKRFQPVH------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE--------SFRSITRS 74 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~ 74 (210)
.+|+|++|+||||+++.- +..++-.. ....+.+.. ..+.+.+.- .++||+|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~~a---vliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTDEA---VLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecCCE---EEEcCCCccccCCCcccccHHHHHH
Confidence 589999999999999886 33332111 111111222 123333333 389999921 12233444
Q ss_pred hh---------ccccEEEEEEECCChh-----h----HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 75 YY---------RGAAGALLVYDITRRE-----T----FNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 75 ~~---------~~~d~~i~V~d~~~~~-----s----~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
++ +-.|++|+++|+.+-- . -..++..+.++....+...|+++++||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 33 2368999999987521 1 13455566667777778899999999999853
No 365
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.52 E-value=2.5e-07 Score=73.93 Aligned_cols=56 Identities=23% Similarity=0.402 Sum_probs=44.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (210)
.++++|+|.|++|||||||+|.+.........+ |.+.....+.++.. +.++||||-
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P-G~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP-GTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC-ceecceEEEEcCCC---eEEecCCCc
Confidence 478999999999999999999998874444333 77777777777654 679999994
No 366
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.51 E-value=3e-06 Score=68.64 Aligned_cols=142 Identities=19% Similarity=0.278 Sum_probs=77.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------CC----CCceeEEE---EEEEEE-CCEEEEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------HD----LTIGVEFG---ARMVTI-DGRPIKLQIW 60 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~----~~~~~~~~---~~~~~~-~~~~~~~~i~ 60 (210)
.+-|+|+||..+|||||++||...-.-++ .. .|....+. ...+.+ ++..+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 47799999999999999999965321111 00 01111111 112333 5677899999
Q ss_pred ecCCcc-------------------------hhhhh----hHHhhc-ccc-EEEEEEECC--C--hhhHHH-HHHHHHHH
Q 028303 61 DTAGQE-------------------------SFRSI----TRSYYR-GAA-GALLVYDIT--R--RETFNH-LSSWLEDA 104 (210)
Q Consensus 61 D~~G~~-------------------------~~~~~----~~~~~~-~~d-~~i~V~d~~--~--~~s~~~-~~~~~~~~ 104 (210)
|+.|.- .|... ....++ .+. ++++.-|-+ + ++.+.. -....+.+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 998810 00000 000111 111 444444433 2 222222 22334444
Q ss_pred HhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCC
Q 028303 105 RQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART 152 (210)
Q Consensus 105 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 152 (210)
... +.|+++++|-.+--. ....+.+.++..+++++++++++..
T Consensus 177 k~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 177 KEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred HHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHH
Confidence 444 789999999887422 3334556667777899988888664
No 367
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.51 E-value=4.3e-07 Score=63.93 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=53.0
Q ss_pred hHHhhccccEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEe
Q 028303 72 TRSYYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS 149 (210)
Q Consensus 72 ~~~~~~~~d~~i~V~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (210)
....+..+|++++|+|+.++.+.. .+..++... ..+.|+++|+||+|+.++.. ..+..+.+...+..++++|
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iS 78 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFS 78 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence 345678999999999999876533 233333222 13689999999999854221 2334455656677899999
Q ss_pred cCCCCC
Q 028303 150 ARTAQN 155 (210)
Q Consensus 150 a~~~~~ 155 (210)
++++.+
T Consensus 79 a~~~~~ 84 (141)
T cd01857 79 ALKENA 84 (141)
T ss_pred ecCCCc
Confidence 998764
No 368
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.50 E-value=1.5e-07 Score=67.22 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=33.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCC------CCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (210)
.++++|++|+|||||+|.|.+....... ....-++.....+.++... .++||||...+.
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~ 101 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG 101 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence 5799999999999999999987432211 1111122223334554433 489999975543
No 369
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.47 E-value=5.3e-06 Score=63.01 Aligned_cols=87 Identities=16% Similarity=0.085 Sum_probs=54.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCceeEEEEEEEEEC---CEEEEEEEEecCCcchhhh------hh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTID---GRPIKLQIWDTAGQESFRS------IT 72 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~D~~G~~~~~~------~~ 72 (210)
.+..-|.|+|++++|||+|+|+|++. .+...... ...+......... +....+.++||+|...... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~-~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTS-QQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCC-CCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 35677999999999999999999998 55432221 1222222222222 2346789999999543222 22
Q ss_pred HHhhcc--ccEEEEEEECCCh
Q 028303 73 RSYYRG--AAGALLVYDITRR 91 (210)
Q Consensus 73 ~~~~~~--~d~~i~V~d~~~~ 91 (210)
...+.. ++++||..+.+..
T Consensus 84 ~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 84 LFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHhCEEEEeccCccc
Confidence 333333 8899988887653
No 370
>PRK13796 GTPase YqeH; Provisional
Probab=98.47 E-value=1.5e-06 Score=70.78 Aligned_cols=109 Identities=24% Similarity=0.305 Sum_probs=68.3
Q ss_pred hhhhhhHHhhcccc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH----HHHc
Q 028303 67 SFRSITRSYYRGAA-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF----AKEN 141 (210)
Q Consensus 67 ~~~~~~~~~~~~~d-~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~ 141 (210)
.+...... +...+ .+++|+|+.+.. ..|...+..... +.|+++|+||+|+... ....+.+..+ +...
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 44444333 34445 999999998743 223333433322 5799999999999642 2333334333 4455
Q ss_pred CC---eEEEEecCCCCCHHHHHHHHHHHHHHHHhhccccccccCCcccccCCCCCC
Q 028303 142 GL---LFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGP 194 (210)
Q Consensus 142 ~~---~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (210)
++ .++.+||+++.|++++++.|.+.. . ......+|.++.|+|
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~----~-------~~~v~vvG~~NvGKS 174 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR----E-------GRDVYVVGVTNVGKS 174 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc----C-------CCeEEEEcCCCCcHH
Confidence 55 589999999999999999986642 1 112555666665554
No 371
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2.7e-06 Score=71.02 Aligned_cols=135 Identities=18% Similarity=0.173 Sum_probs=80.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
+.+-++|+||||+||||||+.|...-. ..+...-..+. ..+.++..+++++.+|. .... .....+-+|++++
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPi-TvvsgK~RRiTflEcp~--Dl~~-miDvaKIaDLVlL 139 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPI-TVVSGKTRRITFLECPS--DLHQ-MIDVAKIADLVLL 139 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCce-EEeecceeEEEEEeChH--HHHH-HHhHHHhhheeEE
Confidence 567888999999999999988874311 00111111111 23567788999999993 3333 2334577999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCCCCHHHHHHHHHH-------cCCeEEEEecCC
Q 028303 85 VYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVSKEEGEQFAKE-------NGLLFLEASART 152 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~ 152 (210)
++|.+-+--.+ ...+++.+..+ +.| ++-|+|+.|+.... -....++.-.+. .++.+|.+|...
T Consensus 140 lIdgnfGfEME-TmEFLnil~~H---GmPrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 140 LIDGNFGFEME-TMEFLNILISH---GMPRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred EeccccCceeh-HHHHHHHHhhc---CCCceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 99987542222 23444555544 444 45678999986533 223333332221 267777777554
No 372
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.42 E-value=2.2e-06 Score=61.52 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=37.7
Q ss_pred EEEEEEEecCCcchhhhhhHH--------hhccccEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEecCCC
Q 028303 54 PIKLQIWDTAGQESFRSITRS--------YYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDL 123 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~--------~~~~~d~~i~V~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 123 (210)
.....++|++|-.+....... ..-..|.+++++|+.+... ..+...+..++... + ++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d---~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---D---RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---C---EEEEecccC
Confidence 346678999996544443322 2234689999999865432 12222333444332 2 678999995
No 373
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.42 E-value=8.3e-07 Score=66.17 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=81.1
Q ss_pred CCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhH-------HHH---HHHHHHHHhhc-CCCCeEEEEEe
Q 028303 51 DGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-------NHL---SSWLEDARQHA-NPNMSIMLVGN 119 (210)
Q Consensus 51 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~-------~~~---~~~~~~~~~~~-~~~~p~ivv~n 119 (210)
+-..+.+.+.|.+|+..-...|..++.++..++|++.++..+.. +.+ ...+..+..+. =.+.++|+++|
T Consensus 195 dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLN 274 (359)
T KOG0085|consen 195 DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN 274 (359)
T ss_pred chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEec
Confidence 34455678999999999999999999999888888877653321 111 22233332221 15789999999
Q ss_pred cCCCCCC----------------CCCCHHHHHHHHHHc----C------CeEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 028303 120 KCDLAHR----------------RAVSKEEGEQFAKEN----G------LLFLEASARTAQNVEEAFIKTAAKILQNIQE 173 (210)
Q Consensus 120 K~D~~~~----------------~~~~~~~~~~~~~~~----~------~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 173 (210)
|.|+.++ ...+.+.+++|..+. + +.-.++-|.+-+||.-+|..+...+++...+
T Consensus 275 KkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~Lk 354 (359)
T KOG0085|consen 275 KKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK 354 (359)
T ss_pred hhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhhH
Confidence 9998543 223344455655542 1 1123566778899999999988888776543
No 374
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.40 E-value=8.6e-07 Score=63.42 Aligned_cols=56 Identities=27% Similarity=0.358 Sum_probs=36.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 64 (210)
...+++++|.+|+|||||+|.|.+.......... +.+.....+.++ ..+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~-~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVP-GTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCC-CcccceEEEEec---CCEEEEECCC
Confidence 4578999999999999999999987643322211 122222223333 2477999998
No 375
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.40 E-value=4.7e-06 Score=66.43 Aligned_cols=143 Identities=22% Similarity=0.194 Sum_probs=78.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCC--------CC-------------CCceeEEEEEEEEE-------------C
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------HD-------------LTIGVEFGARMVTI-------------D 51 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------~~-------------~~~~~~~~~~~~~~-------------~ 51 (210)
.-.|+++|++|+||||++..|...-.... .. ...+..+....... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999988854311000 00 00011111100000 1
Q ss_pred CEEEEEEEEecCCcchhhh--------hhHH----hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 028303 52 GRPIKLQIWDTAGQESFRS--------ITRS----YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119 (210)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~--------~~~~----~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~n 119 (210)
...+.+.++||||...... +... .....+..++|+|++.+.. .+... ...... --+.-+|+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a-~~f~~~---~~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQA-KAFHEA---VGLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHH-HHHHhh---CCCCEEEEE
Confidence 2345788999999643222 1111 1234678999999996432 22221 111111 124468899
Q ss_pred cCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303 120 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 120 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 160 (210)
|.|....- -.+...+...++|+..++ +|++++++-
T Consensus 268 KlD~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 268 KLDGTAKG----GVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 99954322 234555666789988887 777776654
No 376
>PRK14974 cell division protein FtsY; Provisional
Probab=98.38 E-value=8.8e-07 Score=70.88 Aligned_cols=95 Identities=14% Similarity=0.042 Sum_probs=56.0
Q ss_pred EEEEEEecCCcchhhhh----hHHh--hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303 55 IKLQIWDTAGQESFRSI----TRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (210)
+.+.++||+|....... .... .-..|.+++|+|+..+.........+.. .. -.--+++||.|....-.
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~---~~---~~~giIlTKlD~~~~~G 296 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNE---AV---GIDGVILTKVDADAKGG 296 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHh---cC---CCCEEEEeeecCCCCcc
Confidence 45889999996533221 1111 1257899999999765432222222221 11 13468899999744322
Q ss_pred CCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 129 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
.+...+...+.|+..++ +|++++++..
T Consensus 297 ----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 297 ----AALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred ----HHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 23444555688888776 7888877653
No 377
>PRK12288 GTPase RsgA; Reviewed
Probab=98.36 E-value=8.1e-07 Score=71.56 Aligned_cols=58 Identities=26% Similarity=0.354 Sum_probs=36.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc------eeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI------GVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (210)
++|+|.+|+|||||+|+|.+........... -++.....+.+++.. .++||||..++.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 6899999999999999999765432211110 122233334454332 389999986654
No 378
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.35 E-value=8.5e-06 Score=67.11 Aligned_cols=86 Identities=9% Similarity=-0.030 Sum_probs=47.6
Q ss_pred EEEEEEEecCCcchhhhhhH----Hh--hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303 54 PIKLQIWDTAGQESFRSITR----SY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~----~~--~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 127 (210)
.+.+.|+||+|......... .. ...+|-+++|+|++-+....+....+. .. -.+.-+|+||.|....-
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~---~~---~~~~g~IlTKlD~~arg 255 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK---DS---VDVGSVIITKLDGHAKG 255 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH---hc---cCCcEEEEECccCCCCc
Confidence 46788999999654332111 11 235688999999986543322222222 11 23567899999964322
Q ss_pred CCCHHHHHHHHHHcCCeEEEEe
Q 028303 128 AVSKEEGEQFAKENGLLFLEAS 149 (210)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~s 149 (210)
. .+.......+.|+.+++
T Consensus 256 G----~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 256 G----GALSAVAATKSPIIFIG 273 (429)
T ss_pred c----HHhhhHHHHCCCeEEEc
Confidence 1 12334444566655443
No 379
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.31 E-value=1.6e-05 Score=62.09 Aligned_cols=95 Identities=17% Similarity=0.069 Sum_probs=56.3
Q ss_pred EEEEEEEecCCcchhhhhhH-------Hhh-----ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecC
Q 028303 54 PIKLQIWDTAGQESFRSITR-------SYY-----RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~-------~~~-----~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 121 (210)
.+.+.++||||......... ... ..+|.+++|+|++.... .+.. ...+.... -+.-+|+||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~-~~~f~~~~---~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQ-AKVFNEAV---GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHH-HHHHHhhC---CCCEEEEEcc
Confidence 35788999999754333211 111 23889999999985432 2221 22222211 2456889999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 122 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 160 (210)
|..... -.+.......++|+..++ +|++++++.
T Consensus 228 De~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 228 DGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 974432 234455556688888777 677776654
No 380
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=2.9e-06 Score=67.49 Aligned_cols=151 Identities=21% Similarity=0.251 Sum_probs=91.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----------------C-------ceeEEEEEEEEE----------C
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL----------------T-------IGVEFGARMVTI----------D 51 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------~-------~~~~~~~~~~~~----------~ 51 (210)
..++++|+|...+|||||+--|+.+....-.-. | .+.+.......+ +
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 458999999999999999988875533221110 1 011111111111 1
Q ss_pred CEEEEEEEEecCCcchhhhhhHHhhc--cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303 52 GRPIKLQIWDTAGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (210)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (210)
...--++++|.+|+..|.......+. -.|..++|+++..+..+. .+..+..+... ++|++++++|+|+.....+
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccccchhH
Confidence 11124789999999998875555444 357899999998765432 23333444443 7999999999999654221
Q ss_pred C------------------------HHHHHHHHHH----cCCeEEEEecCCCCCHHHH
Q 028303 130 S------------------------KEEGEQFAKE----NGLLFLEASARTAQNVEEA 159 (210)
Q Consensus 130 ~------------------------~~~~~~~~~~----~~~~~~~~sa~~~~~i~~~ 159 (210)
. .+++...+++ +-+|+|-+|...|++++-+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 1 1122222222 2357999999999998643
No 381
>PRK01889 GTPase RsgA; Reviewed
Probab=98.28 E-value=4.5e-06 Score=67.72 Aligned_cols=84 Identities=15% Similarity=0.166 Sum_probs=57.5
Q ss_pred hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 155 (210)
..++|.+++|+++..+.....+..++..+... ++|.++|+||+|+.+......+....+ ..+.+++.+|++++.+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG 184 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence 57889999999997544444555555554443 678899999999964311011112222 3467899999999999
Q ss_pred HHHHHHHHH
Q 028303 156 VEEAFIKTA 164 (210)
Q Consensus 156 i~~~~~~l~ 164 (210)
++++..+|.
T Consensus 185 l~~L~~~L~ 193 (356)
T PRK01889 185 LDVLAAWLS 193 (356)
T ss_pred HHHHHHHhh
Confidence 999888763
No 382
>PRK12289 GTPase RsgA; Reviewed
Probab=98.26 E-value=1.7e-06 Score=69.80 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=35.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc------eeEEEEEEEEECCEEEEEEEEecCCcch
Q 028303 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI------GVEFGARMVTIDGRPIKLQIWDTAGQES 67 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (210)
++|+|++|+|||||+|+|.+........... -++.....+.+++.. .++||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 7999999999999999999765432211110 022333334454322 4899999854
No 383
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.24 E-value=9.1e-06 Score=64.84 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=87.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCC----------------C--CCCCceeEEEEEE------------------EE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP----------------V--HDLTIGVEFGARM------------------VT 49 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~--~~~~~~~~~~~~~------------------~~ 49 (210)
.++|+|+|...+|||||+-.|++..... + .....+.+.--.. ..
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 4799999999999999987776542211 1 1111111111000 00
Q ss_pred -ECCEEEEEEEEecCCcchhhhh--hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303 50 -IDGRPIKLQIWDTAGQESFRSI--TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (210)
Q Consensus 50 -~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (210)
.++..-.++++|.+|++.|-.. ....-+..|.-++++-++.+.- --..+.+-..... .+|+++|++|+|+...
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgLALaL---~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGLALAL---HVPVFVVVTKIDMCPA 288 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhhhhhh---cCcEEEEEEeeccCcH
Confidence 0112224789999999988763 3334456788888887765421 1112222222222 6899999999998643
Q ss_pred CCCCH--HHHHHHHH--------------------------HcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 127 RAVSK--EEGEQFAK--------------------------ENGLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 127 ~~~~~--~~~~~~~~--------------------------~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
..... .....+.+ +.-+++|.+|-.+|.|++ ++..++..+
T Consensus 289 NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~-LLkmFLNll 356 (641)
T KOG0463|consen 289 NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP-LLKMFLNLL 356 (641)
T ss_pred HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH-HHHHHHhhc
Confidence 22111 11111111 113578999999999985 344444443
No 384
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=8.9e-06 Score=62.35 Aligned_cols=60 Identities=25% Similarity=0.459 Sum_probs=45.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC----CCceeEEEEEEEEECCEEEEEEEEecCC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD----LTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~G 64 (210)
..++|+-+|..|.|||||++.|++..+..... +..........+.-.+..+++++.||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 46899999999999999999999987754433 3334444444444466778999999998
No 385
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.20 E-value=3.5e-06 Score=64.86 Aligned_cols=57 Identities=28% Similarity=0.381 Sum_probs=35.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCC------CceeEEEEEEEEECCEEEEEEEEecCCcchh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRPIKLQIWDTAGQESF 68 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (210)
.++++|++|+|||||+|+|.+......... ..-++.....+.+.+. .++||||...+
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~ 184 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEF 184 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCcccc
Confidence 578999999999999999997643221111 0012222233444332 59999997543
No 386
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.16 E-value=3.7e-06 Score=65.53 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQP------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (210)
..+++|++|+|||||+|+|....... ......=++.....+.++++.. ++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence 46899999999999999998642211 1111111233334456653332 89999986544
No 387
>PRK13796 GTPase YqeH; Provisional
Probab=98.15 E-value=3.8e-06 Score=68.35 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=37.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCC----CCCCCceeEEEEEEEEECCEEEEEEEEecCCcc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 66 (210)
.++.|+|.+|+|||||+|+|....... ......+++.....+.+++. ..++||||-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 478999999999999999998643111 11122244444455555443 3599999964
No 388
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.14 E-value=6.5e-06 Score=66.94 Aligned_cols=125 Identities=14% Similarity=0.145 Sum_probs=64.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCC----CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhH--------H
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR--------S 74 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~ 74 (210)
.+++++|.+|+|||||+|+|++..... ......+++.....+.+++ .+.++||||......+.. .
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~~~~~~~~l~~~~l~~ 231 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIINSHQMAHYLDKKDLKY 231 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCChhHhhhhcCHHHHhh
Confidence 479999999999999999999754211 1112223444444444432 245999999654332111 1
Q ss_pred h--hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028303 75 Y--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE 140 (210)
Q Consensus 75 ~--~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 140 (210)
. -+......+.++....-.+..+. ++..+ ......+.+.+++.+..+.. ..+.+.++..+
T Consensus 232 ~~~~~~i~~~~~~l~~~q~~~~ggl~-~~d~~---~~~~~~~~~~~~~~~~~h~t--~~~~a~~~~~~ 293 (360)
T TIGR03597 232 ITPKKEIKPKTYQLNPNQTLFLGGLA-RFDYL---KGEKTSFTFYVSNELNIHRT--KLENADELYNK 293 (360)
T ss_pred cCCCCccCceEEEeCCCCEEEEceEE-EEEEe---cCCceEEEEEccCCceeEee--chhhhHHHHHh
Confidence 1 12345666666654422221111 01111 11245566667776654432 23445555444
No 389
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=7.4e-06 Score=68.82 Aligned_cols=117 Identities=20% Similarity=0.204 Sum_probs=81.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCC-----CCCCC-----------CCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKR-----FQPVH-----------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~-----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (210)
.-+|.+.-+-.+||||+-.+.+... ..+.. ....+++.......+...++++.++||||+-.|-
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 3468888889999999988865221 00000 0112444444444455557889999999999998
Q ss_pred hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (210)
Q Consensus 70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (210)
-.....++-.|+.++|+++..+-.-+...-|.+ +.++ ++|-|.++||+|....
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry---~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY---NVPRICFINKMDRMGA 171 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc---CCCeEEEEehhhhcCC
Confidence 888899999999999999987644344444443 3333 7999999999997543
No 390
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.09 E-value=8e-06 Score=60.14 Aligned_cols=111 Identities=15% Similarity=0.170 Sum_probs=60.2
Q ss_pred EEEEEecCCcchhhhh---hHHh---hcc---ccEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 56 KLQIWDTAGQESFRSI---TRSY---YRG---AAGALLVYDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 56 ~~~i~D~~G~~~~~~~---~~~~---~~~---~d~~i~V~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
.+.++|+|||-+.... .+.. +++ --+++|++|..= -++...+...+..+.....-.+|.|=|++|+|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 4679999998655442 1121 222 125666666431 12223333333333333334789999999999854
Q ss_pred CCCCCHHHHHH-------------------------------HHHHcC-CeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 126 RRAVSKEEGEQ-------------------------------FAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 126 ~~~~~~~~~~~-------------------------------~~~~~~-~~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
. .+.++.+. +...++ +.+++....+.+++..++..|-..+.
T Consensus 179 ~--~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 179 D--KNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred h--hhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 3 11111111 111122 45778888888888888877665554
No 391
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.08 E-value=7.7e-06 Score=64.47 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=38.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC------CceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (210)
-.++++|++|+|||||+|.|.+......... ...++.....+...+.. .++||||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence 4689999999999999999998654322111 11123333334444222 489999987653
No 392
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.05 E-value=6.5e-05 Score=56.42 Aligned_cols=76 Identities=29% Similarity=0.293 Sum_probs=45.5
Q ss_pred EEEEEec-CCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCC-CeEEEEEecCCCCCCCCCCHHH
Q 028303 56 KLQIWDT-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKCDLAHRRAVSKEE 133 (210)
Q Consensus 56 ~~~i~D~-~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~~~~~~~~~~ 133 (210)
.+.+.|| +|-+.|.+ ...+.+|.+|.|+|.+-. ++............. + .++.+|+||+|-. ...
T Consensus 135 e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~-sl~taeri~~L~~el---g~k~i~~V~NKv~e~------e~~ 201 (255)
T COG3640 135 EVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYK-SLRTAERIKELAEEL---GIKRIFVVLNKVDEE------EEL 201 (255)
T ss_pred cEEEEecccchhhhcc---ccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHh---CCceEEEEEeeccch------hHH
Confidence 4556676 45555544 556789999999998753 343333322222222 4 6899999999943 233
Q ss_pred HHHHHHHcCCe
Q 028303 134 GEQFAKENGLL 144 (210)
Q Consensus 134 ~~~~~~~~~~~ 144 (210)
....+...+.+
T Consensus 202 ~~~~~~~~~~~ 212 (255)
T COG3640 202 LRELAEELGLE 212 (255)
T ss_pred HHhhhhccCCe
Confidence 44445555544
No 393
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=3.7e-05 Score=70.16 Aligned_cols=112 Identities=23% Similarity=0.269 Sum_probs=63.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC-CCCCC----CCCCceeEEEEEEEEECCEEEEEEEEecCCcc--------hhhhhhHHh
Q 028303 9 YIIIGDTGVGKSCLLLQFTDK-RFQPV----HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE--------SFRSITRSY 75 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~ 75 (210)
.+|+|++|+||||++..--.. ++.+. .....+ +.+. ...+.+. -.++||+|.- .....|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~c-dwwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNC-DWWFTDE---AVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCC-Cccc-Ccccccc---eEEEcCCcceecccCcchhhHHHHHHH
Confidence 379999999999987543211 11111 111111 1111 1223332 3488998821 222344433
Q ss_pred ---------hccccEEEEEEECCCh------hh---HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 76 ---------YRGAAGALLVYDITRR------ET---FNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 76 ---------~~~~d~~i~V~d~~~~------~s---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
.+-.|++|+.+|+.+- +- ...++..+.++........|+++++||.|+..
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 2346899999998752 11 12244455666666667899999999999854
No 394
>PRK00098 GTPase RsgA; Reviewed
Probab=98.02 E-value=1.2e-05 Score=63.73 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=35.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc------eeEEEEEEEEECCEEEEEEEEecCCcch
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI------GVEFGARMVTIDGRPIKLQIWDTAGQES 67 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (210)
.++++|++|+|||||+|.|.+........... -++.....+.+++. ..++||||...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 57899999999999999999765432211110 12222333334432 25899999754
No 395
>PRK13695 putative NTPase; Provisional
Probab=98.02 E-value=0.00016 Score=52.64 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
++|+|+|++|+|||||+..+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999987543
No 396
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=0.00014 Score=59.08 Aligned_cols=139 Identities=15% Similarity=0.092 Sum_probs=71.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCCceeEEE----------------EEEEEE-----------CCEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGVEFG----------------ARMVTI-----------DGRPIK 56 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~----------------~~~~~~-----------~~~~~~ 56 (210)
-.++|+|++|+||||++.+|...-... ......+.+.+ .....+ ......
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 467899999999999999987542110 00000001010 000001 012346
Q ss_pred EEEEecCCcchhhhhhH---Hhhc---cccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCC--CeEEEEEecCCCCCCC
Q 028303 57 LQIWDTAGQESFRSITR---SYYR---GAAGALLVYDITRRE-TFNHLSSWLEDARQHANPN--MSIMLVGNKCDLAHRR 127 (210)
Q Consensus 57 ~~i~D~~G~~~~~~~~~---~~~~---~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~ 127 (210)
+.++||+|......... ..+. ...-.++|++++... ....+...+.......... -+-=+|+||.|-..
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-- 295 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-- 295 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC--
Confidence 78999999664433211 1122 234568899988643 3333333233222111000 12357789999643
Q ss_pred CCCHHHHHHHHHHcCCeEEEEe
Q 028303 128 AVSKEEGEQFAKENGLLFLEAS 149 (210)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~s 149 (210)
..=.+..++...+.|+..++
T Consensus 296 --~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 --NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred --CccHHHHHHHHHCcCeEEEe
Confidence 23345566677778866664
No 397
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.97 E-value=7.2e-05 Score=55.61 Aligned_cols=85 Identities=19% Similarity=0.047 Sum_probs=48.7
Q ss_pred EEEEEEecCCcchhhhh----hHHh--hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303 55 IKLQIWDTAGQESFRSI----TRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (210)
+.+.++||+|....... ...+ ....+-+++|++++.... .+... ....... + +-=+++||.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~-~~~~~~~--~-~~~lIlTKlDet~--- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQA-LAFYEAF--G-IDGLILTKLDETA--- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHH-HHHHHHS--S-TCEEEEESTTSSS---
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHH-HHHhhcc--c-CceEEEEeecCCC---
Confidence 45789999996544331 1111 125678999999987543 22221 1222221 1 2246799999633
Q ss_pred CCHHHHHHHHHHcCCeEEEEe
Q 028303 129 VSKEEGEQFAKENGLLFLEAS 149 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s 149 (210)
..-.+..++...+.|+-.++
T Consensus 155 -~~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 155 -RLGALLSLAYESGLPISYIT 174 (196)
T ss_dssp -TTHHHHHHHHHHTSEEEEEE
T ss_pred -CcccceeHHHHhCCCeEEEE
Confidence 23446677777888876665
No 398
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=0.00043 Score=58.50 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=50.6
Q ss_pred EEEEEEEecCCcchhhhhhHH---hhc--cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303 54 PIKLQIWDTAGQESFRSITRS---YYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~---~~~--~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (210)
.+.+.|+||+|.......... .+. .....++|++.... ...+...+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~--- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG--- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc---
Confidence 457889999996433321110 011 12356777877642 2233333333322 235679999999632
Q ss_pred CCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303 129 VSKEEGEQFAKENGLLFLEASARTAQNV 156 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i 156 (210)
..-.+.......+.++..++ +|..+
T Consensus 499 -~lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 499 -RFGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred -chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 33456666777788876664 44555
No 399
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.95 E-value=1.2e-05 Score=66.41 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=40.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 66 (210)
..+.|++||.|++||||+||.|.+.+...... |.|.+..-.++.+.. .+.|.|+||.-
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~-TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSS-TPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeeeec-CCCCcceeEEEEcCC---CceecCCCCcc
Confidence 36999999999999999999999987644322 224444434444433 35689999943
No 400
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=5.1e-05 Score=62.52 Aligned_cols=138 Identities=19% Similarity=0.126 Sum_probs=71.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc-----------------------eeEEEEEEEE-------ECCEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-----------------------GVEFGARMVT-------IDGRPIK 56 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~-------~~~~~~~ 56 (210)
-.|+|+|++|+||||++..|.+........... +.......-. ..-....
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d 271 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH 271 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence 479999999999999999887531100000000 0000000000 0011235
Q ss_pred EEEEecCCcchhhh----hhHHhh--ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC
Q 028303 57 LQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 130 (210)
Q Consensus 57 ~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 130 (210)
+.++||+|...... ....+. ...+-.++|+|++.... .+..++..+... -+-=+|+||.|-.. .
T Consensus 272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~--~~~~~~~~f~~~----~~~~~I~TKlDEt~----~ 341 (420)
T PRK14721 272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD--TLDEVISAYQGH----GIHGCIITKVDEAA----S 341 (420)
T ss_pred EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH--HHHHHHHHhcCC----CCCEEEEEeeeCCC----C
Confidence 67999999554322 122221 22456789999985321 232322222211 13357899999643 2
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303 131 KEEGEQFAKENGLLFLEASARTAQNV 156 (210)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~sa~~~~~i 156 (210)
.=.+..++...++++..++ +|.++
T Consensus 342 ~G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 342 LGIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred ccHHHHHHHHhCCCEEEEE--CCCCc
Confidence 2345566777788866664 45565
No 401
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.93 E-value=4.7e-05 Score=55.13 Aligned_cols=135 Identities=22% Similarity=0.258 Sum_probs=62.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEec-CCc---------------------
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT-AGQ--------------------- 65 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~--------------------- 65 (210)
+|++.|++|+|||||++++...-..... +. .-+....+.-++...-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~-~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGL-PV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCG-GE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCC-cc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 6899999999999999998754311110 11 1111222223333444444444 221
Q ss_pred -chhhh----hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecC-CCCCCCCCCHHHHHHHHH
Q 028303 66 -ESFRS----ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC-DLAHRRAVSKEEGEQFAK 139 (210)
Q Consensus 66 -~~~~~----~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~~ 139 (210)
+.+.. .....+..+| ++|+|=--+- ......|...+......+.|+|.++.+. +. .-...+..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~m-El~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKM-ELKSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STT-CCC-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchh-hhcCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence 11111 1222223445 6777732110 0011234444444444578988888766 32 12344555
Q ss_pred HcCCeEEEEecCCCCCH
Q 028303 140 ENGLLFLEASARTAQNV 156 (210)
Q Consensus 140 ~~~~~~~~~sa~~~~~i 156 (210)
..++.+++++..+.+.+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 56788999877666554
No 402
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.92 E-value=9e-05 Score=53.88 Aligned_cols=83 Identities=16% Similarity=0.058 Sum_probs=44.7
Q ss_pred EEEEEEEecCCcchhhh----hhHHhh--ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303 54 PIKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 127 (210)
...+.++|++|...... ....+. ...+.+++|+|+...... ..+...+.... + ..-+|+||.|.....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~--~-~~~viltk~D~~~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL--G-ITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC--C-CCEEEEECCcCCCCc
Confidence 34577899999743221 111111 348999999998754332 22233332222 2 346778999975422
Q ss_pred CCCHHHHHHHHHHcCCeEE
Q 028303 128 AVSKEEGEQFAKENGLLFL 146 (210)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~ 146 (210)
-.+...+...++|+.
T Consensus 156 ----g~~~~~~~~~~~p~~ 170 (173)
T cd03115 156 ----GAALSIRAVTGKPIK 170 (173)
T ss_pred ----chhhhhHHHHCcCeE
Confidence 223335555565543
No 403
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.92 E-value=0.0001 Score=57.61 Aligned_cols=90 Identities=22% Similarity=0.171 Sum_probs=64.1
Q ss_pred HhhccccEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCC
Q 028303 74 SYYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART 152 (210)
Q Consensus 74 ~~~~~~d~~i~V~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 152 (210)
...-+.|-.++|+.+.+|+- ...+..++-.+.. .++..++++||+|+.+....-.++....+...+.+++.+|+++
T Consensus 75 p~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~ 151 (301)
T COG1162 75 PPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKN 151 (301)
T ss_pred CcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcC
Confidence 33445778888888888764 3334444333333 3677888999999976554333456678888999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 028303 153 AQNVEEAFIKTAAK 166 (210)
Q Consensus 153 ~~~i~~~~~~l~~~ 166 (210)
++++.++.+.+...
T Consensus 152 ~~~~~~l~~~l~~~ 165 (301)
T COG1162 152 GDGLEELAELLAGK 165 (301)
T ss_pred cccHHHHHHHhcCC
Confidence 99999988876544
No 404
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.91 E-value=0.00022 Score=56.97 Aligned_cols=85 Identities=11% Similarity=0.109 Sum_probs=47.8
Q ss_pred EEEEEEecCCcchhhhhhHHhhc--------cccEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 55 IKLQIWDTAGQESFRSITRSYYR--------GAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~V~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
....++++.|-.....+...+.. ..+.++.|+|+.+.... .+......++... + ++++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A---D---~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA---D---RILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC---C---EEEEeccccCC
Confidence 45678889997766655544422 24789999999764321 1111122223221 2 78999999865
Q ss_pred CCCCCHHHHHHHHHHc--CCeEEEEe
Q 028303 126 RRAVSKEEGEQFAKEN--GLLFLEAS 149 (210)
Q Consensus 126 ~~~~~~~~~~~~~~~~--~~~~~~~s 149 (210)
.. +.++...... .++++.++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec
Confidence 32 3444444433 45565543
No 405
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.00018 Score=54.61 Aligned_cols=161 Identities=20% Similarity=0.288 Sum_probs=95.4
Q ss_pred eEEEEEEcCCCC--CHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEE--EEEEEecCCcchhhhhhHHhhccccE
Q 028303 6 LFKYIIIGDTGV--GKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPI--KLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 6 ~~~i~v~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
...++|+|-.|+ ||.+|+.+|....+...........+... +++.+.+ .+.+.-.+--+++.-.......-..+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgw--tid~kyysadi~lcishicde~~lpn~~~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGW--TIDNKYYSADINLCISHICDEKFLPNAEIAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeece--EecceeeecceeEEeecccchhccCCcccccceee
Confidence 356889999998 99999999988777665555444444333 3444333 12211111111111111112233468
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC---------------------------CC------
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR---------------------------RA------ 128 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---------------------------~~------ 128 (210)
++.|||.+....+..+..|+..-.... .+ -.+.++||+|.... ..
T Consensus 82 ~vmvfdlse~s~l~alqdwl~htdins-fd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg 159 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDALQDWLPHTDINS-FD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG 159 (418)
T ss_pred EEEEEeccchhhhHHHHhhcccccccc-ch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence 999999999999999988876432211 11 22455899885311 00
Q ss_pred -----------CCHHHHHHHHHHcCCeEEEEecCCC------------CCHHHHHHHHHHHHHHH
Q 028303 129 -----------VSKEEGEQFAKENGLLFLEASARTA------------QNVEEAFIKTAAKILQN 170 (210)
Q Consensus 129 -----------~~~~~~~~~~~~~~~~~~~~sa~~~------------~~i~~~~~~l~~~~~~~ 170 (210)
.....+.+|+.++++.+++.++.+. .|+..+|..|-..+...
T Consensus 160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpg 224 (418)
T KOG4273|consen 160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPG 224 (418)
T ss_pred ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCcc
Confidence 0112346688888999999888532 46888888777665543
No 406
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.90 E-value=0.00014 Score=51.56 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=35.7
Q ss_pred EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCC
Q 028303 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (210)
.+.+.|+||+|..... ..++..+|.+++|...+-.+...-++- ..+. .--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~------~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA--GIME------IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh--hHhh------hcCEEEEeCCC
Confidence 4578899998864222 347788999999988773332222211 2221 12378899987
No 407
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.89 E-value=0.00037 Score=55.69 Aligned_cols=88 Identities=16% Similarity=0.088 Sum_probs=51.8
Q ss_pred EEEEEEecCCcchhhhhhHHhhc--------cccEEEEEEECCChhhHHH-HH-HHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303 55 IKLQIWDTAGQESFRSITRSYYR--------GAAGALLVYDITRRETFNH-LS-SWLEDARQHANPNMSIMLVGNKCDLA 124 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~V~d~~~~~s~~~-~~-~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (210)
....++++.|-.....+...+.. ..|+++-|+|+.+...... +. ....++.. -=++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCC
Confidence 45568888886655443333332 3478999999987543222 22 22233322 227999999997
Q ss_pred CCCCCCHHHHHHHHHHc--CCeEEEEec
Q 028303 125 HRRAVSKEEGEQFAKEN--GLLFLEASA 150 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~--~~~~~~~sa 150 (210)
+... .+..+...... .++++.++.
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence 6543 34445555543 466777776
No 408
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=0.00017 Score=58.72 Aligned_cols=139 Identities=19% Similarity=0.132 Sum_probs=72.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCC---------CCC------------CCceeEEEEEEE--E----E---C-CEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP---------VHD------------LTIGVEFGARMV--T----I---D-GRPI 55 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~---------~~~------------~~~~~~~~~~~~--~----~---~-~~~~ 55 (210)
-.|+|+|++|+||||++..|...-... ... ...+..+....- . + . ...+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 578999999999999999985321100 000 000111110000 0 0 0 0135
Q ss_pred EEEEEecCCcchhhhh----hHHhh--ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303 56 KLQIWDTAGQESFRSI----TRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (210)
Q Consensus 56 ~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (210)
.+.|+||+|....... ....+ ...+.+++|+|++-.. .++......+... + .-=+|+||.|-...
T Consensus 322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~---~-idglI~TKLDET~k--- 392 (436)
T PRK11889 322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI---H-IDGIVFTKFDETAS--- 392 (436)
T ss_pred CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC---C-CCEEEEEcccCCCC---
Confidence 7889999996543221 22222 2357789999986432 1223333333221 1 23578999996442
Q ss_pred CHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303 130 SKEEGEQFAKENGLLFLEASARTAQNVE 157 (210)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 157 (210)
.=.+..++...++|+..++ +|.++.
T Consensus 393 -~G~iLni~~~~~lPIsyit--~GQ~VP 417 (436)
T PRK11889 393 -SGELLKIPAVSSAPIVLMT--DGQDVK 417 (436)
T ss_pred -ccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 2335566667788866554 344443
No 409
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.87 E-value=6.8e-05 Score=54.88 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=41.5
Q ss_pred EEEEEEecCCcchhhhh--hHH---hhccccEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303 55 IKLQIWDTAGQESFRSI--TRS---YYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~--~~~---~~~~~d~~i~V~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (210)
....++.+.|-.....+ ... ..-..+.+|.|+|+.+.....++.. +..++... + ++++||+|+....
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A---D---vIvlnK~D~~~~~- 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA---D---VIVLNKIDLVSDE- 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----S---EEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc---C---EEEEeccccCChh-
Confidence 45667888885554444 111 1224579999999977533333333 23333221 2 7899999985533
Q ss_pred CCHHHHHHHHHH
Q 028303 129 VSKEEGEQFAKE 140 (210)
Q Consensus 129 ~~~~~~~~~~~~ 140 (210)
...+..++..+.
T Consensus 158 ~~i~~~~~~ir~ 169 (178)
T PF02492_consen 158 QKIERVREMIRE 169 (178)
T ss_dssp --HHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 122444444443
No 410
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.80 E-value=4.9e-05 Score=63.10 Aligned_cols=85 Identities=16% Similarity=0.046 Sum_probs=47.7
Q ss_pred EEEEEecCCcchhhhhh------HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303 56 KLQIWDTAGQESFRSIT------RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (210)
Q Consensus 56 ~~~i~D~~G~~~~~~~~------~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (210)
.+.|+||+|........ ....-.+|.+++|+|++.... .......+.... + ..-+|+||.|....-
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~---av~~a~~F~~~l--~-i~gvIlTKlD~~a~~-- 248 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ---AKNQAKAFHEAV--G-IGGIIITKLDGTAKG-- 248 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH---HHHHHHHHHhcC--C-CCEEEEecccCCCcc--
Confidence 68899999965443211 112346789999999977532 222222222111 1 235788999964322
Q ss_pred CHHHHHHHHHHcCCeEEEEec
Q 028303 130 SKEEGEQFAKENGLLFLEASA 150 (210)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~sa 150 (210)
=.+.......+.|+.+++.
T Consensus 249 --G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 249 --GGALSAVAETGAPIKFIGT 267 (437)
T ss_pred --cHHHHHHHHHCcCEEEEec
Confidence 2244455566777665543
No 411
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.80 E-value=0.0019 Score=46.40 Aligned_cols=142 Identities=7% Similarity=0.039 Sum_probs=95.5
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEec-CCcchhhhhhHHhhcccc
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT-AGQESFRSITRSYYRGAA 80 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~~~~~~~~~~~~~~~d 80 (210)
...+...|+++|..+.++..|...+...... .. +++++--. |=..+ ....-+..|
T Consensus 11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~~--------~~------------l~Vh~a~sLPLp~e----~~~lRprID 66 (176)
T PF11111_consen 11 PELNTATILLVGTEEALLQQLAEAMLEEDKE--------FK------------LKVHLAKSLPLPSE----NNNLRPRID 66 (176)
T ss_pred CCcceeEEEEecccHHHHHHHHHHHHhhccc--------ee------------EEEEEeccCCCccc----ccCCCceeE
Confidence 4456789999999999999999999953210 11 11111110 00011 111235789
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 160 (210)
.++|++|.+..-++..++.-+..+....=.+ .+.++.+-....+...+...++.+++..+..+++...-...++...+-
T Consensus 67 lIVFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lA 145 (176)
T PF11111_consen 67 LIVFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLA 145 (176)
T ss_pred EEEEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHH
Confidence 9999999999988888877665553322223 455666667666667788899999999999999999888877766666
Q ss_pred HHHHHHHH
Q 028303 161 IKTAAKIL 168 (210)
Q Consensus 161 ~~l~~~~~ 168 (210)
+.|++.+.
T Consensus 146 qRLL~~lq 153 (176)
T PF11111_consen 146 QRLLRMLQ 153 (176)
T ss_pred HHHHHHHH
Confidence 66555443
No 412
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.78 E-value=0.0007 Score=55.08 Aligned_cols=132 Identities=17% Similarity=0.115 Sum_probs=70.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc---eeEEEEE---------------EEEE------------CCEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI---GVEFGAR---------------MVTI------------DGRPIK 56 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~---------------~~~~------------~~~~~~ 56 (210)
=.|+++||+|+||||-+-+|...-......... +++.+.. .+.+ .-..+.
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d 283 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCD 283 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCC
Confidence 458999999999999988876543311111111 1111100 0000 123457
Q ss_pred EEEEecCCcchhhhh----hHHhhccc--cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC
Q 028303 57 LQIWDTAGQESFRSI----TRSYYRGA--AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 130 (210)
Q Consensus 57 ~~i~D~~G~~~~~~~----~~~~~~~~--d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 130 (210)
+.|+||.|...++.. ...++..+ .-+.+|++++... .++...+..+... + .-=+++||.|-.. +
T Consensus 284 ~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~---~-i~~~I~TKlDET~----s 353 (407)
T COG1419 284 VILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLF---P-IDGLIFTKLDETT----S 353 (407)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccC---C-cceeEEEcccccC----c
Confidence 889999997655543 33344333 3667788887542 3455555444332 1 1137789999533 2
Q ss_pred HHHHHHHHHHcCCeEEEE
Q 028303 131 KEEGEQFAKENGLLFLEA 148 (210)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~ 148 (210)
.=.........+.|+..+
T Consensus 354 ~G~~~s~~~e~~~PV~Yv 371 (407)
T COG1419 354 LGNLFSLMYETRLPVSYV 371 (407)
T ss_pred hhHHHHHHHHhCCCeEEE
Confidence 233444555556664444
No 413
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00014 Score=60.22 Aligned_cols=131 Identities=23% Similarity=0.273 Sum_probs=81.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCC------------CCCC--CCCCceeEEEEEEEEE----------------CCEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKR------------FQPV--HDLTIGVEFGARMVTI----------------DGRP 54 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~------------~~~~--~~~~~~~~~~~~~~~~----------------~~~~ 54 (210)
+.-++-|+.+...|||||...|.... |... .....+++.....+.. ++..
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 34567899999999999999986431 1110 0001122222222211 3456
Q ss_pred EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC-CCCCCHHH
Q 028303 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-RRAVSKEE 133 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~ 133 (210)
+.+.++|.||+-.|.+.....++-.|+.++|+|..++.-.+.-.-..+.+.. .+.-+++.||+|..- +-+.+.++
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~Ee 173 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQEE 173 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHHH
Confidence 7889999999999999999999999999999999876433222222333332 234468899999631 23455555
Q ss_pred HHHHHH
Q 028303 134 GEQFAK 139 (210)
Q Consensus 134 ~~~~~~ 139 (210)
..+.+.
T Consensus 174 Lyqtf~ 179 (842)
T KOG0469|consen 174 LYQTFQ 179 (842)
T ss_pred HHHHHH
Confidence 444333
No 414
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.73 E-value=0.00089 Score=48.94 Aligned_cols=86 Identities=16% Similarity=0.071 Sum_probs=45.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEE--EecC-CcchhhhhhHHhhccccEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQI--WDTA-GQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~D~~-G~~~~~~~~~~~~~~~d~~i~ 84 (210)
.++++|++|+|||||++.+.+...+.. +. +.+++..+.+.. .+.+ |+...-.+....+.+.+++++
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~-----G~------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNG-----DN------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCC-----cE------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 578999999999999999997643211 11 223332221111 1122 333444456666677766555
Q ss_pred EE--ECCChhhHHHHHHHHHHH
Q 028303 85 VY--DITRRETFNHLSSWLEDA 104 (210)
Q Consensus 85 V~--d~~~~~s~~~~~~~~~~~ 104 (210)
== ..-|+.+...+..++..+
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~ 117 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRL 117 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHH
Confidence 21 122344444455555444
No 415
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00031 Score=61.87 Aligned_cols=139 Identities=16% Similarity=0.087 Sum_probs=72.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCC--C-CCceeEEEE----------------EEEEE-----------CCEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH--D-LTIGVEFGA----------------RMVTI-----------DGRPIKL 57 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~--~-~~~~~~~~~----------------~~~~~-----------~~~~~~~ 57 (210)
-|+|+|++|+||||.+..|...-..... . .-.+.+.+. ..... .-....+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 5799999999999999998754211100 0 000000000 00000 0123467
Q ss_pred EEEecCCcchhhh----hhHHh--hccccEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC
Q 028303 58 QIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRR-ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 130 (210)
Q Consensus 58 ~i~D~~G~~~~~~----~~~~~--~~~~d~~i~V~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 130 (210)
.|+||+|...... ..... ....+-+++|+|++.. ..+.++...|..... . -+-=+|+||.|-...
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~---~-~i~glIlTKLDEt~~---- 338 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAG---E-DVDGCIITKLDEATH---- 338 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhccc---C-CCCEEEEeccCCCCC----
Confidence 8999999433222 11111 2245678999998753 333333333322110 0 133578999996432
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303 131 KEEGEQFAKENGLLFLEASARTAQNV 156 (210)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~sa~~~~~i 156 (210)
.=.+..+....++|+..++ +|++|
T Consensus 339 ~G~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 339 LGPALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred ccHHHHHHHHHCCCeEEEe--cCCCC
Confidence 2335556667788876664 45666
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.70 E-value=0.00031 Score=58.24 Aligned_cols=87 Identities=16% Similarity=0.033 Sum_probs=49.1
Q ss_pred EEEEEEEecCCcchhhhh----hHH--hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303 54 PIKLQIWDTAGQESFRSI----TRS--YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~----~~~--~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 127 (210)
.+.+.|+||+|....... ... ..-..|.+++|+|+..+.. ...+...+.... + ..-+|+||.|-....
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~---~~~~a~~f~~~v--~-i~giIlTKlD~~~~~ 255 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQD---AVNTAKTFNERL--G-LTGVVLTKLDGDARG 255 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHH---HHHHHHHHHhhC--C-CCEEEEeCccCcccc
Confidence 356889999995433221 111 1235788999999876532 223333332221 1 235779999953322
Q ss_pred CCCHHHHHHHHHHcCCeEEEEec
Q 028303 128 AVSKEEGEQFAKENGLLFLEASA 150 (210)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~sa 150 (210)
-.+.......++|+.++..
T Consensus 256 ----G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 256 ----GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ----cHHHHHHHHHCcCEEEEeC
Confidence 2255666667788666554
No 417
>PRK10867 signal recognition particle protein; Provisional
Probab=97.70 E-value=0.00036 Score=57.93 Aligned_cols=87 Identities=15% Similarity=0.041 Sum_probs=47.7
Q ss_pred EEEEEEEecCCcchhhh----hhHHh--hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303 54 PIKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 127 (210)
.+.+.|+||+|...... ..... .-..+.+++|+|+..+.. .......+.... + ..-+|+||.|-....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~---av~~a~~F~~~~--~-i~giIlTKlD~~~rg 256 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQD---AVNTAKAFNEAL--G-LTGVILTKLDGDARG 256 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHH---HHHHHHHHHhhC--C-CCEEEEeCccCcccc
Confidence 35688999999543222 11111 125678899999876533 222222222211 1 235778999963322
Q ss_pred CCCHHHHHHHHHHcCCeEEEEec
Q 028303 128 AVSKEEGEQFAKENGLLFLEASA 150 (210)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~sa 150 (210)
. .+.......++|+.++..
T Consensus 257 G----~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 257 G----AALSIRAVTGKPIKFIGT 275 (433)
T ss_pred c----HHHHHHHHHCcCEEEEeC
Confidence 1 255566666777666554
No 418
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=5.8e-05 Score=60.77 Aligned_cols=153 Identities=21% Similarity=0.147 Sum_probs=90.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCC-------------------C------------CCCCCCCceeEEEEEEEEECCE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKR-------------------F------------QPVHDLTIGVEFGARMVTIDGR 53 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~-------------------~------------~~~~~~~~~~~~~~~~~~~~~~ 53 (210)
..++++++|+..+||||+-..+.... . .++....-+.......+ .-.
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F--Ete 155 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF--ETE 155 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE--Eec
Confidence 45899999999999999865553210 0 00111111222222222 222
Q ss_pred EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhh---HHH---HHHHHHHHHhhcCCCCeEEEEEecCCCCCC-
Q 028303 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FNH---LSSWLEDARQHANPNMSIMLVGNKCDLAHR- 126 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s---~~~---~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~- 126 (210)
..++.+.|.||+..|-.....-..++|..++|+++...+- |+. .+......... .-...|+++||+|-+..
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~--gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA--GVKHLIVLINKMDDPTVN 233 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh--ccceEEEEEEeccCCccC
Confidence 3468899999999998887788889999999999864321 111 11111111111 13577899999996431
Q ss_pred -CCCCHHH----HHHHHHHc------CCeEEEEecCCCCCHHHHHH
Q 028303 127 -RAVSKEE----GEQFAKEN------GLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 127 -~~~~~~~----~~~~~~~~------~~~~~~~sa~~~~~i~~~~~ 161 (210)
.....++ ...+.... ...++++|..+|.++.+..+
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1111222 22333322 24589999999999887653
No 419
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.67 E-value=0.00048 Score=57.81 Aligned_cols=102 Identities=18% Similarity=0.083 Sum_probs=54.7
Q ss_pred EEEEEecCCcchhhh---hhHHhhcc---ccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303 56 KLQIWDTAGQESFRS---ITRSYYRG---AAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (210)
Q Consensus 56 ~~~i~D~~G~~~~~~---~~~~~~~~---~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (210)
.+.++||+|...... .....+.. ..-.++|+|++... .+..+...+.. ....-+|+||.|-..
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~-------~~~~g~IlTKlDet~--- 405 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRG-------PGLAGCILTKLDEAA--- 405 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhcc-------CCCCEEEEeCCCCcc---
Confidence 567999999443322 11111221 23478899987532 22222222211 123457789999532
Q ss_pred CCHHHHHHHHHHcCCeEEEEecCCCCCH-HHHH----HHHHHHHHHH
Q 028303 129 VSKEEGEQFAKENGLLFLEASARTAQNV-EEAF----IKTAAKILQN 170 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i-~~~~----~~l~~~~~~~ 170 (210)
..-.+..+....++++..++ +|+++ +++. +.|++.++..
T Consensus 406 -~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~~ 449 (484)
T PRK06995 406 -SLGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAFCA 449 (484)
T ss_pred -cchHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHhcC
Confidence 33446667777788876664 45666 4433 3455555554
No 420
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.00034 Score=57.53 Aligned_cols=133 Identities=22% Similarity=0.166 Sum_probs=68.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCC-CCC---------CC--C----------CCceeEEEEEE-E-----EECCEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKR-FQP---------VH--D----------LTIGVEFGARM-V-----TIDGRPIKLQ 58 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~-~~~---------~~--~----------~~~~~~~~~~~-~-----~~~~~~~~~~ 58 (210)
.-++|+|++|+||||++.+|.... ... .. . ...+....... . .+....+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999886421 000 00 0 00011111000 0 0011245678
Q ss_pred EEecCCcchhhh----hhHHhhc-----cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303 59 IWDTAGQESFRS----ITRSYYR-----GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (210)
Q Consensus 59 i~D~~G~~~~~~----~~~~~~~-----~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (210)
++||+|...... .+..+++ ...-.++|+|++-... .+.......... -+-=+|+||.|-...
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~--~~~~~~~~f~~~----~~~glIlTKLDEt~~--- 374 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH--HTLTVLKAYESL----NYRRILLTKLDEADF--- 374 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH--HHHHHHHHhcCC----CCCEEEEEcccCCCC---
Confidence 999999653222 1122221 2346889999886532 222222222111 133588999996432
Q ss_pred CHHHHHHHHHHcCCeEEEEe
Q 028303 130 SKEEGEQFAKENGLLFLEAS 149 (210)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~s 149 (210)
.=.+...+...+.|+..++
T Consensus 375 -~G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 375 -LGSFLELADTYSKSFTYLS 393 (432)
T ss_pred -ccHHHHHHHHHCCCEEEEe
Confidence 2235556666777865554
No 421
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.62 E-value=0.00064 Score=44.94 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=48.6
Q ss_pred EEEEc-CCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303 9 YIIIG-DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (210)
Q Consensus 9 i~v~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d 87 (210)
|.+.| ..|+||||+...+...-.. ...+..- +..+. .+.+.++|+|+..... ....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~-------~d~d~-~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLL-------IDLDP-QYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEE-------EeCCC-CCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56666 6799999987666432211 1111111 11121 1678899999865332 3367788999999998
Q ss_pred CCChhhHHHHHHHHH
Q 028303 88 ITRRETFNHLSSWLE 102 (210)
Q Consensus 88 ~~~~~s~~~~~~~~~ 102 (210)
.+. .+...+..+++
T Consensus 71 ~~~-~s~~~~~~~~~ 84 (104)
T cd02042 71 PSP-LDLDGLEKLLE 84 (104)
T ss_pred CCH-HHHHHHHHHHH
Confidence 864 44555555444
No 422
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.60 E-value=0.00033 Score=49.08 Aligned_cols=106 Identities=11% Similarity=0.149 Sum_probs=60.4
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECC
Q 028303 10 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89 (210)
Q Consensus 10 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~ 89 (210)
+.-|.+|+|||++.-.+...-. .......-.+.. .......+.+.++|+|+.. .......+..+|.+++|.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 4567899999998666542211 000000000000 0001111678899999753 333456788999999999987
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCC
Q 028303 90 RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123 (210)
Q Consensus 90 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 123 (210)
. .++..+...+..+.... ...++.+|+|+++.
T Consensus 78 ~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 P-TSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred h-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 4 34444444444443332 24577899999974
No 423
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.60 E-value=6.1e-05 Score=60.52 Aligned_cols=58 Identities=26% Similarity=0.395 Sum_probs=42.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (210)
...++++|+|.|++||||+||+|...........+ |.+.....+..+. .+.|.|.||-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~p-GvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVP-GVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCc-cchhhhhheeccC---CceeccCCce
Confidence 35689999999999999999999988875543333 5555555454443 4668999993
No 424
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.55 E-value=0.0011 Score=55.15 Aligned_cols=91 Identities=19% Similarity=0.108 Sum_probs=51.4
Q ss_pred EEEEEEEecCCcchhhh----hhHHhhc---cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303 54 PIKLQIWDTAGQESFRS----ITRSYYR---GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~----~~~~~~~---~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (210)
.+.+.|+||+|...... ....++. ...-+++|++++-.. ..+...+..+... + +--+++||.|-..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~- 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETS- 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEecccccc-
Confidence 35788999999654331 2222333 334678888886532 2233333332211 2 2358899999633
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303 127 RAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (210)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 156 (210)
..-.+..++...+.|+..++ +|.++
T Consensus 372 ---~~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 372 ---SLGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred ---cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 22356677777888876664 45554
No 425
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.55 E-value=0.00059 Score=39.62 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=29.4
Q ss_pred hccccEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCeEEEEEecCC
Q 028303 76 YRGAAGALLVYDITR--RETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (210)
.+-.++++|++|++. +.+.+.-...+..++.... +.|+++|+||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 345689999999996 4456666667777776653 689999999998
No 426
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.54 E-value=0.00099 Score=42.94 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=44.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh-hHHhhccccEEEEEEE
Q 028303 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYD 87 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~V~d 87 (210)
+++.|..|+|||++...+...-... +.. ...++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~~----v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------GKR----VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------CCe----EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 6788999999999988876442210 001 12222 6779999986533321 2455668899999998
Q ss_pred CCCh
Q 028303 88 ITRR 91 (210)
Q Consensus 88 ~~~~ 91 (210)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 8754
No 427
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.54 E-value=0.0009 Score=46.39 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRF 31 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~ 31 (210)
-.+++.|++|+|||++++.+...-.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999999987643
No 428
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.0026 Score=52.18 Aligned_cols=91 Identities=12% Similarity=-0.004 Sum_probs=51.4
Q ss_pred EEEEEEEecCCcchhhh----hhHHhhcc--cc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303 54 PIKLQIWDTAGQESFRS----ITRSYYRG--AA-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~----~~~~~~~~--~d-~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (210)
.+.+.++||+|...... .....+.. .+ -.++|+|++... ..+...+...... -+-=+++||.|-...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCCc
Confidence 45788999999654332 11222222 23 588999998753 2333333333211 134588999996332
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303 127 RAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (210)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 156 (210)
.=.+..++...+.|+..++ +|.++
T Consensus 328 ----~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 328 ----VGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred ----chHHHHHHHHHCCCEEEEe--CCCCC
Confidence 2335556666777765553 45666
No 429
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00076 Score=54.80 Aligned_cols=85 Identities=13% Similarity=0.074 Sum_probs=46.8
Q ss_pred EEEEEEecCCcchhhhh----hHHhhc--cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303 55 IKLQIWDTAGQESFRSI----TRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (210)
+.+.|+||+|....... ...+.. ..+.+++|+++... ..++...+..+.. --+--+|+||.|-...
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~~----l~i~glI~TKLDET~~-- 357 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLAE----IPIDGFIITKMDETTR-- 357 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcCc----CCCCEEEEEcccCCCC--
Confidence 57889999997543321 122222 34677778876432 2233333322211 1233578999996432
Q ss_pred CCHHHHHHHHHHcCCeEEEEe
Q 028303 129 VSKEEGEQFAKENGLLFLEAS 149 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s 149 (210)
.=.+...+...+.|+..++
T Consensus 358 --~G~~Lsv~~~tglPIsylt 376 (407)
T PRK12726 358 --IGDLYTVMQETNLPVLYMT 376 (407)
T ss_pred --ccHHHHHHHHHCCCEEEEe
Confidence 2335566677788866664
No 430
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=0.0016 Score=50.86 Aligned_cols=138 Identities=18% Similarity=0.110 Sum_probs=73.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCC-----------C----------CCCCceeEEEEEEEE----------E-CCEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-----------V----------HDLTIGVEFGARMVT----------I-DGRP 54 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-----------~----------~~~~~~~~~~~~~~~----------~-~~~~ 54 (210)
-+++++|++|+||||++..+...-... . +....+..+... .. . ....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence 589999999999999988875431100 0 000011111110 00 0 1124
Q ss_pred EEEEEEecCCcchhhh----hhHHhh--ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303 55 IKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (210)
+.+.++||+|...... .+...+ ...+-+++|+|++... .++..+...+... .+-=+++||.|-...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~~----~~~~~I~TKlDet~~-- 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETAS-- 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCCC----CCCEEEEEeecCCCC--
Confidence 5788999999653322 111222 2456789999987432 1232333333221 233588999996442
Q ss_pred CCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303 129 VSKEEGEQFAKENGLLFLEASARTAQNVE 157 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 157 (210)
.=.+..++...+.|+..++ +|+++.
T Consensus 227 --~G~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 227 --SGELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred --ccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 2235556666788866554 344443
No 431
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.45 E-value=0.00013 Score=49.58 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 432
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.40 E-value=0.00018 Score=42.71 Aligned_cols=22 Identities=36% Similarity=0.444 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
..+|.|++|+|||||++++.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999987643
No 433
>PRK08118 topology modulation protein; Reviewed
Probab=97.39 E-value=0.00016 Score=52.39 Aligned_cols=24 Identities=46% Similarity=0.570 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.+|+|+|++|||||||.+.|....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998653
No 434
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.38 E-value=0.00094 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
--|++.|+.|+|||||++.+...-
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998764
No 435
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.38 E-value=0.004 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-.+|.|.-|||||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3678899999999999999864
No 436
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.38 E-value=0.00014 Score=54.60 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=36.8
Q ss_pred EEEEEEecCCcchhhhh------hHHhhccccEEEEEE---EC---CChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCC
Q 028303 55 IKLQIWDTAGQESFRSI------TRSYYRGAAGALLVY---DI---TRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~------~~~~~~~~d~~i~V~---d~---~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (210)
-...++|+|||-++... ....+...|.=+.++ |. ++|..+-. ..+..+.....-..|-|=|+.|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhH
Confidence 35679999997654431 222333455444444 43 34544322 222222222223678888999999
Q ss_pred CC
Q 028303 123 LA 124 (210)
Q Consensus 123 ~~ 124 (210)
+.
T Consensus 175 l~ 176 (290)
T KOG1533|consen 175 LL 176 (290)
T ss_pred HH
Confidence 84
No 437
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.36 E-value=0.00016 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.+|+|+|+|||||||+.++|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 438
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.36 E-value=0.00048 Score=55.19 Aligned_cols=127 Identities=17% Similarity=0.137 Sum_probs=78.5
Q ss_pred cCCc-chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028303 62 TAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE 140 (210)
Q Consensus 62 ~~G~-~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 140 (210)
.+|+ ..+.......+..+|+++-|+|+.+|.+.... .+..... +.|.++|+||.|+..... ..+..+.+..+
T Consensus 17 ~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~-----~l~~~v~-~k~~i~vlNK~DL~~~~~-~~~W~~~~~~~ 89 (322)
T COG1161 17 FPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP-----ELERIVK-EKPKLLVLNKADLAPKEV-TKKWKKYFKKE 89 (322)
T ss_pred CCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc-----cHHHHHc-cCCcEEEEehhhcCCHHH-HHHHHHHHHhc
Confidence 3664 36666788888999999999999998653221 1122221 345599999999965333 23334444444
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHH---HHHHHhhccccccccCCcccccCCCCCCC
Q 028303 141 NGLLFLEASARTAQNVEEAFIKTAAK---ILQNIQEGALDAVNDSGIKVGYGRGQGPS 195 (210)
Q Consensus 141 ~~~~~~~~sa~~~~~i~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (210)
.+...+.++++.+.+...+...+... ..+...+.......-....+|.++.|+|+
T Consensus 90 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSs 147 (322)
T COG1161 90 EGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKST 147 (322)
T ss_pred CCCccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHH
Confidence 46667888888887777666543333 33333333222222337888888877764
No 439
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.35 E-value=0.00026 Score=53.07 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=25.8
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
|..+...-|+|+|++|||||||++.+.+.
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 66777788999999999999999999864
No 440
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.35 E-value=0.0014 Score=43.66 Aligned_cols=100 Identities=15% Similarity=0.038 Sum_probs=56.8
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCCh
Q 028303 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 91 (210)
Q Consensus 12 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~ 91 (210)
=+..|+||||+...|...-........ ........... .+.++|+|+.... .....+..+|.++++.+.+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~-----~l~d~d~~~~~-D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~- 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRV-----LLVDLDLQFGD-DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL- 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcE-----EEEECCCCCCC-CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-
Confidence 456789999986666432111101111 00001111111 6789999986533 33456788999999998764
Q ss_pred hhHHHHHHHHHHHHhhcCC-CCeEEEEEec
Q 028303 92 ETFNHLSSWLEDARQHANP-NMSIMLVGNK 120 (210)
Q Consensus 92 ~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK 120 (210)
.+...+..+...+...... ...+.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4556666666666554433 3466677774
No 441
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.35 E-value=0.00018 Score=50.44 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (210)
|+++|++|||||||++.|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999844
No 442
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.32 E-value=0.0026 Score=44.80 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46899999999999999998764
No 443
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.32 E-value=0.0028 Score=46.21 Aligned_cols=85 Identities=28% Similarity=0.302 Sum_probs=59.6
Q ss_pred EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028303 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 132 (210)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 132 (210)
..+.+.++|+|+.... .....+..+|.+++++..+. .+...+..++..+... +.|+.+|+|++|.... ..+
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 4568899999976432 33456688999999999874 3555666666655543 5678899999996432 345
Q ss_pred HHHHHHHHcCCeEE
Q 028303 133 EGEQFAKENGLLFL 146 (210)
Q Consensus 133 ~~~~~~~~~~~~~~ 146 (210)
++++++...+++++
T Consensus 162 ~~~~~~~~~~~~vl 175 (179)
T cd03110 162 EIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHcCCCeE
Confidence 67778887787754
No 444
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.32 E-value=0.0003 Score=54.95 Aligned_cols=60 Identities=23% Similarity=0.362 Sum_probs=36.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCC----CCCCceeEEEEEE-EEECCEEEEEEEEecCCc
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----HDLTIGVEFGARM-VTIDGRPIKLQIWDTAGQ 65 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~ 65 (210)
..+++.|+|.||+|||||+|.+........ ...-.+.+..... +.+.... .+.+.||||-
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 458899999999999999998864432221 1111133333332 3343333 3779999993
No 445
>PRK07261 topology modulation protein; Provisional
Probab=97.31 E-value=0.00022 Score=51.86 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.+|+|+|++|||||||.+.|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998744
No 446
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.31 E-value=0.0017 Score=55.33 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-+++.||+||||||.++.|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3577999999999999998755
No 447
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.25 E-value=0.00037 Score=52.29 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=24.8
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
|+-.....|+|.|++|||||||.+.|...
T Consensus 1 ~~~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 1 MMMKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34456789999999999999999999865
No 448
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00026 Score=53.82 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDKRF 31 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~~~ 31 (210)
|.++|++|||||||++.+.+-..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 68999999999999999987643
No 449
>PRK10646 ADP-binding protein; Provisional
Probab=97.23 E-value=0.0027 Score=45.07 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
-|++-|+-|+|||||++.+...-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999997653
No 450
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.0012 Score=53.32 Aligned_cols=51 Identities=14% Similarity=0.129 Sum_probs=31.9
Q ss_pred CEEEEEEEEecCCcchhhh-----hh-HHhhccccEEEEEEECCChhhHHHHHHHHH
Q 028303 52 GRPIKLQIWDTAGQESFRS-----IT-RSYYRGAAGALLVYDITRRETFNHLSSWLE 102 (210)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~-----~~-~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~ 102 (210)
..++.+.|.||.|...... +. -.-.-..|-+|||.|++-+..-......++
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk 237 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK 237 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH
Confidence 3457899999999543222 11 112235799999999998766444444333
No 451
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.21 E-value=0.00032 Score=48.76 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57999999999999999998764
No 452
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.20 E-value=0.00043 Score=50.20 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=24.9
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
|+.....-+.|+|++|||||||++++...
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence 55666677899999999999999999865
No 453
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.20 E-value=0.00041 Score=42.37 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (210)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 454
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.18 E-value=0.0032 Score=45.83 Aligned_cols=44 Identities=27% Similarity=0.148 Sum_probs=27.9
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 80 d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
|++++|+|+.++.+..+ ..+...+. ....+.|+|+|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999988643221 12222211 1123579999999999854
No 455
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.019 Score=47.53 Aligned_cols=28 Identities=39% Similarity=0.432 Sum_probs=23.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCC
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF 31 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~ 31 (210)
+-.-+|+++||.|+|||||+..|++...
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl~ 638 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGKLD 638 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcCCC
Confidence 3456899999999999999999987643
No 456
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.14 E-value=0.00052 Score=51.11 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++||+|||||||++.+-+-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 47899999999999999998654
No 457
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.13 E-value=0.00046 Score=56.42 Aligned_cols=63 Identities=19% Similarity=0.065 Sum_probs=38.5
Q ss_pred EEEEEEecCCcchhhhhhH------HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCC
Q 028303 55 IKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 123 (210)
+.+.|+||+|.-..+...- ...-+.|=+++|+|+.-+..-.+....|+.-... .=+|+||.|-
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i------tGvIlTKlDG 251 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI------TGVILTKLDG 251 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC------ceEEEEcccC
Confidence 5788999999654443211 1233678999999999877655555544433211 1255666664
No 458
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.12 E-value=0.0092 Score=47.07 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=44.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcc--ccEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG--AAGALL 84 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--~d~~i~ 84 (210)
-.|+|.|++||||||+++.|-...+ .. +|-.....+..+....... .+.+.+
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~~~g~----------------~~----------~d~~~~~L~~~l~~~~~~~~~~~~~av 60 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALEDLGY----------------YC----------VDNLPPSLLPKLVELLAQSGGIRKVAV 60 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHHHcCC----------------eE----------ECCcCHHHHHHHHHHHHhcCCCCCeEE
Confidence 4689999999999999999952211 11 2222223333333333322 356788
Q ss_pred EEECCChhhHHHHHHHHHHHHhh
Q 028303 85 VYDITRRETFNHLSSWLEDARQH 107 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~ 107 (210)
++|+............+..+...
T Consensus 61 ~iD~r~~~~~~~~~~~~~~L~~~ 83 (288)
T PRK05416 61 VIDVRSRPFFDDLPEALDELRER 83 (288)
T ss_pred EEccCchhhHHHHHHHHHHHHHc
Confidence 88888765444555555555543
No 459
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.12 E-value=0.00091 Score=45.68 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
--|++-|+-|+|||||++.+...-
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999987653
No 460
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.11 E-value=0.0002 Score=57.69 Aligned_cols=83 Identities=19% Similarity=0.145 Sum_probs=51.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh--hhhHHhhccccE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--SITRSYYRGAAG 81 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~~~~~~~~~~d~ 81 (210)
...+-|+++|.|++||||+||.|-..+.....+.+ +.+.. +.+---.-++.++|+||--... ......++ +
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIp-GETKV---WQYItLmkrIfLIDcPGvVyps~dset~ivLk---G 377 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIP-GETKV---WQYITLMKRIFLIDCPGVVYPSSDSETDIVLK---G 377 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcccccccCCC-CcchH---HHHHHHHhceeEecCCCccCCCCCchHHHHhh---c
Confidence 35688999999999999999999988876654443 21111 1110112257799999954222 22333333 5
Q ss_pred EEEEEECCChhh
Q 028303 82 ALLVYDITRRET 93 (210)
Q Consensus 82 ~i~V~d~~~~~s 93 (210)
++=|-.+.+++.
T Consensus 378 vVRVenv~~pe~ 389 (572)
T KOG2423|consen 378 VVRVENVKNPED 389 (572)
T ss_pred eeeeeecCCHHH
Confidence 666777777653
No 461
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.11 E-value=0.00054 Score=52.18 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=24.6
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
|.....++|+|+|+|||||||+.+.|...
T Consensus 1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 1 MKLKGPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45556789999999999999999998653
No 462
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00054 Score=51.44 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDKRFQP 33 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~~~~~ 33 (210)
-+++||+|||||||...+.+.+...
T Consensus 33 haiMGPNGsGKSTLa~~i~G~p~Y~ 57 (251)
T COG0396 33 HAIMGPNGSGKSTLAYTIMGHPKYE 57 (251)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCce
Confidence 3799999999999999999986533
No 463
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.10 E-value=0.00043 Score=53.30 Aligned_cols=21 Identities=38% Similarity=0.446 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (210)
++++||+|||||||++.+.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999864
No 464
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.07 E-value=0.00047 Score=52.04 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~ 31 (210)
-++++||+|||||||++-+-+-..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 378999999999999999986543
No 465
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.06 E-value=0.00036 Score=50.21 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 466
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.06 E-value=0.0032 Score=44.21 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~ 31 (210)
-|++-|+-|+|||||.+.+...--
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHHcC
Confidence 478999999999999999976543
No 467
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.05 E-value=0.0006 Score=46.81 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (210)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998663
No 468
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.00035 Score=50.79 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.-++|.||+|+|||||+++|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999775
No 469
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.00059 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-.+++||+|||||||++.|-..
T Consensus 35 VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhh
Confidence 3589999999999999988643
No 470
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.04 E-value=0.00061 Score=50.19 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.|+|+|++|||||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999997653
No 471
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.03 E-value=0.0073 Score=50.97 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (210)
.+|.||+||||||.++-|...
T Consensus 113 LLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 113 LLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred EEEeCCCCCCchhHHHHHHHh
Confidence 578999999999999998754
No 472
>PRK06217 hypothetical protein; Validated
Probab=97.03 E-value=0.00063 Score=49.97 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999865
No 473
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.02 E-value=0.019 Score=41.56 Aligned_cols=84 Identities=12% Similarity=-0.025 Sum_probs=50.1
Q ss_pred EEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHH
Q 028303 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE 135 (210)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 135 (210)
.+.++|+|+.... .....+..+|.+|++++.+.. +...+..+...+.... .....+++|+.+..... ..+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence 6889999986433 244556889999999988753 4444545555544421 23567889999864321 112223
Q ss_pred HHHHHcCCeEE
Q 028303 136 QFAKENGLLFL 146 (210)
Q Consensus 136 ~~~~~~~~~~~ 146 (210)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 34444566654
No 474
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.01 E-value=0.00074 Score=46.41 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP 33 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~ 33 (210)
-.++++|++|+|||++++.+...-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 468999999999999999998765433
No 475
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.00 E-value=0.00068 Score=47.39 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (210)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999865
No 476
>PRK01889 GTPase RsgA; Reviewed
Probab=96.99 E-value=0.0008 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRF 31 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~ 31 (210)
-+++++|.+|+|||||++.|.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3689999999999999999997543
No 477
>PRK03839 putative kinase; Provisional
Probab=96.98 E-value=0.0007 Score=49.52 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
+|+|+|++||||||+.++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999765
No 478
>PRK04195 replication factor C large subunit; Provisional
Probab=96.96 E-value=0.019 Score=48.75 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.-.++|.|++|+||||+++.+...-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3468999999999999999998653
No 479
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.96 E-value=0.0076 Score=47.43 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=61.4
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc-------------------
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ------------------- 65 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------------------- 65 (210)
....++++|++|.|||+++++|....-... ... . ..+.+....+|..
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DED-A------------ERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 446799999999999999999997543221 111 0 0112333344331
Q ss_pred -----chhhhhhHHhhccccEEEEEEECCC---hhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCC
Q 028303 66 -----ESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHAN-PNMSIMLVGNKCD 122 (210)
Q Consensus 66 -----~~~~~~~~~~~~~~d~~i~V~d~~~---~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D 122 (210)
..........++...+=++|+|=-+ ..+...-+..++.++.... ..+|+|.||+.--
T Consensus 126 ~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 126 PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 1112233456777888889998543 1233334455555555443 5799999997543
No 480
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.96 E-value=0.00077 Score=49.23 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 028303 7 FKYIIIGDTGVGKSCLLLQFT 27 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~ 27 (210)
-.++|+|++|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999886
No 481
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.96 E-value=0.00071 Score=46.24 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (210)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 482
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.95 E-value=0.00067 Score=54.31 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (210)
++++||+|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998754
No 483
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.00072 Score=51.89 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-++|+||+|+|||||++.+++-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999984
No 484
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.93 E-value=0.00081 Score=49.10 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 485
>PRK14530 adenylate kinase; Provisional
Probab=96.93 E-value=0.00086 Score=50.59 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.+|+|+|+|||||||+.+.|...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999643
No 486
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.92 E-value=0.00085 Score=50.63 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57999999999999999999764
No 487
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.92 E-value=0.00086 Score=44.60 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 028303 7 FKYIIIGDTGVGKSCLLLQFT 27 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~ 27 (210)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357999999999999999976
No 488
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.90 E-value=0.00087 Score=48.94 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4799999999999999999874
No 489
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.90 E-value=0.0012 Score=49.38 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-.|+|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999875
No 490
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.88 E-value=0.00091 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (210)
|+|.|++|||||||++.|.+.-
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998653
No 491
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.88 E-value=0.025 Score=42.89 Aligned_cols=102 Identities=9% Similarity=0.096 Sum_probs=64.6
Q ss_pred EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028303 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 132 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 132 (210)
+.+.|+|+.|.... .....+..+|.+|+=.-.+..+..+. ...|+..+.......+|.-|+.|++.-.. ......
T Consensus 84 ~d~VlvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~~ 160 (231)
T PF07015_consen 84 FDFVLVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQR 160 (231)
T ss_pred CCEEEEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHHH
Confidence 56889999886532 24456668999998776664433222 33455555555557899999999987421 111122
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 133 EGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
.+.++.. ++|++.+......-+.+++.
T Consensus 161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 161 IISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHh--cCCccccccccHHHHHHHHH
Confidence 2333433 58888888888777777766
No 492
>PRK13949 shikimate kinase; Provisional
Probab=96.88 E-value=0.001 Score=48.22 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
+|+|+|++||||||+.+.|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988754
No 493
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.88 E-value=0.00098 Score=50.01 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999764
No 494
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.87 E-value=0.0012 Score=49.47 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=21.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
...-|+|+|++|||||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3456889999999999999999754
No 495
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.87 E-value=0.007 Score=45.05 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (210)
|+|+|++||||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987654
No 496
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.87 E-value=0.001 Score=49.76 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999764
No 497
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.86 E-value=0.001 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999764
No 498
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.86 E-value=0.0011 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999988754
No 499
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.86 E-value=0.00096 Score=49.25 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998764
No 500
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.85 E-value=0.00068 Score=59.10 Aligned_cols=120 Identities=20% Similarity=0.165 Sum_probs=73.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcee---------------EEE------------------------
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV---------------EFG------------------------ 44 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---------------~~~------------------------ 44 (210)
-....|+|+|..++||||.+..+.+..+.+-...-.+- +..
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 45578999999999999999999986543321110000 000
Q ss_pred --------------EEEEEEC-CEEEEEEEEecCCc-------------chhhhhhHHhhccccEEEEEEECCChhhHHH
Q 028303 45 --------------ARMVTID-GRPIKLQIWDTAGQ-------------ESFRSITRSYYRGAAGALLVYDITRRETFNH 96 (210)
Q Consensus 45 --------------~~~~~~~-~~~~~~~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~ 96 (210)
...+.+. -.-..+++.|.||. .....+...++...+.+|+.+...+-+ -.
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d--~a 184 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD--IA 184 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh--hh
Confidence 0011111 11125678899992 244457778888889899888876621 11
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 97 LSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 97 ~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
...++.........+...+-|++|.|+.+
T Consensus 185 ts~alkiarevDp~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 185 TSPALVVAREVDPGGSRTLEVITKFDFMD 213 (657)
T ss_pred cCHHHHHHHhhCCCccchhHHhhhHHhhh
Confidence 12345555555556678888888888743
Done!