Query 028303
Match_columns 210
No_of_seqs 150 out of 1881
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 15:25:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.6E-42 5.3E-47 260.6 20.0 168 5-172 12-179 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 3.7E-37 1.3E-41 229.7 23.9 174 3-176 5-178 (206)
3 3cpj_B GTP-binding protein YPT 100.0 2.1E-37 7.3E-42 234.0 19.1 178 1-178 8-185 (223)
4 1vg8_A RAS-related protein RAB 100.0 1.9E-35 6.5E-40 220.3 21.5 197 4-210 6-207 (207)
5 2bme_A RAB4A, RAS-related prot 100.0 2.7E-34 9.4E-39 210.6 24.1 177 3-179 7-183 (186)
6 2ew1_A RAS-related protein RAB 100.0 2.1E-34 7E-39 214.4 23.4 172 3-174 23-194 (201)
7 2bov_A RAla, RAS-related prote 100.0 2.8E-34 9.6E-39 213.8 24.2 169 4-173 12-181 (206)
8 1zbd_A Rabphilin-3A; G protein 100.0 5.2E-34 1.8E-38 212.1 25.3 174 1-174 3-176 (203)
9 3tkl_A RAS-related protein RAB 100.0 6.2E-34 2.1E-38 210.3 25.5 171 4-174 14-184 (196)
10 2o52_A RAS-related protein RAB 100.0 1.4E-34 4.8E-39 215.0 22.0 178 1-178 20-197 (200)
11 2fu5_C RAS-related protein RAB 100.0 5.9E-35 2E-39 213.7 19.0 172 3-174 5-176 (183)
12 2hup_A RAS-related protein RAB 100.0 2.4E-34 8.2E-39 214.0 22.4 171 2-172 25-196 (201)
13 2oil_A CATX-8, RAS-related pro 100.0 8.7E-34 3E-38 209.3 24.6 172 2-173 21-192 (193)
14 2a5j_A RAS-related protein RAB 100.0 5.7E-34 1.9E-38 210.1 23.1 171 3-173 18-188 (191)
15 2gf9_A RAS-related protein RAB 100.0 7.9E-34 2.7E-38 209.0 23.7 170 2-171 18-187 (189)
16 1z0f_A RAB14, member RAS oncog 100.0 7.3E-34 2.5E-38 206.7 22.7 168 2-169 11-178 (179)
17 2f7s_A C25KG, RAS-related prot 100.0 3.3E-34 1.1E-38 215.4 19.7 177 1-177 20-207 (217)
18 3tw8_B RAS-related protein RAB 100.0 2.1E-33 7E-38 204.7 22.9 172 3-175 6-177 (181)
19 2efe_B Small GTP-binding prote 100.0 2.2E-33 7.6E-38 204.7 22.8 167 4-170 10-176 (181)
20 3t5g_A GTP-binding protein RHE 100.0 9.5E-34 3.2E-38 206.9 20.7 170 1-171 1-171 (181)
21 3dz8_A RAS-related protein RAB 100.0 1.1E-34 3.7E-39 214.0 15.5 170 3-172 20-189 (191)
22 1z08_A RAS-related protein RAB 100.0 9.2E-34 3.1E-38 204.7 20.0 167 2-168 2-168 (170)
23 1r2q_A RAS-related protein RAB 100.0 2.7E-33 9.4E-38 201.9 22.4 164 4-167 4-167 (170)
24 3clv_A RAB5 protein, putative; 100.0 5.1E-33 1.7E-37 206.3 24.2 169 1-172 2-207 (208)
25 1z0j_A RAB-22, RAS-related pro 100.0 5.6E-33 1.9E-37 200.4 23.6 165 3-167 3-167 (170)
26 2g6b_A RAS-related protein RAB 100.0 4E-33 1.4E-37 203.2 22.9 169 2-170 6-175 (180)
27 2fg5_A RAB-22B, RAS-related pr 100.0 1.5E-33 5.1E-38 208.1 20.6 167 3-169 20-186 (192)
28 1g16_A RAS-related protein SEC 100.0 1.6E-33 5.5E-38 203.3 20.3 166 4-170 1-166 (170)
29 2il1_A RAB12; G-protein, GDP, 100.0 2.4E-33 8E-38 207.1 20.9 168 3-170 23-191 (192)
30 1z2a_A RAS-related protein RAB 100.0 2.5E-33 8.5E-38 201.9 20.4 166 3-169 2-167 (168)
31 3kkq_A RAS-related protein M-R 100.0 9.2E-33 3.1E-37 202.0 23.6 165 4-169 16-182 (183)
32 1ek0_A Protein (GTP-binding pr 100.0 6E-33 2.1E-37 200.1 22.2 163 5-167 2-167 (170)
33 3bc1_A RAS-related protein RAB 100.0 9.5E-33 3.2E-37 203.3 23.4 172 3-174 8-190 (195)
34 3cph_A RAS-related protein SEC 100.0 1.3E-32 4.4E-37 205.9 23.2 171 3-174 17-187 (213)
35 2p5s_A RAS and EF-hand domain 100.0 3E-33 1E-37 207.6 19.4 166 3-168 25-196 (199)
36 3oes_A GTPase rhebl1; small GT 100.0 1.9E-33 6.6E-38 208.9 17.8 173 1-174 19-192 (201)
37 2fn4_A P23, RAS-related protei 100.0 2.3E-32 7.8E-37 199.2 23.0 168 4-172 7-175 (181)
38 2y8e_A RAB-protein 6, GH09086P 100.0 1E-32 3.4E-37 200.7 21.0 164 5-168 13-176 (179)
39 2nzj_A GTP-binding protein REM 100.0 1.8E-32 6E-37 198.8 22.1 168 4-172 2-172 (175)
40 2iwr_A Centaurin gamma 1; ANK 100.0 2.6E-32 9E-37 198.7 22.8 167 1-174 2-174 (178)
41 1wms_A RAB-9, RAB9, RAS-relate 100.0 3.6E-32 1.2E-36 197.7 23.1 166 3-169 4-174 (177)
42 4dsu_A GTPase KRAS, isoform 2B 100.0 5.6E-32 1.9E-36 198.5 24.3 168 5-174 3-171 (189)
43 2j0v_A RAC-like GTP-binding pr 100.0 1.6E-33 5.4E-38 210.9 16.1 169 1-171 4-182 (212)
44 1z06_A RAS-related protein RAB 100.0 1.9E-32 6.4E-37 201.6 21.2 165 4-168 18-187 (189)
45 3q85_A GTP-binding protein REM 100.0 1.5E-32 5.1E-37 198.2 20.1 164 6-169 2-167 (169)
46 3cbq_A GTP-binding protein REM 100.0 9.6E-33 3.3E-37 204.4 19.5 166 4-169 21-188 (195)
47 3c5c_A RAS-like protein 12; GD 100.0 1.3E-32 4.3E-37 202.4 19.9 163 4-168 19-185 (187)
48 2atv_A RERG, RAS-like estrogen 100.0 3.7E-32 1.3E-36 201.2 22.0 169 1-171 23-193 (196)
49 2hxs_A RAB-26, RAS-related pro 100.0 7.3E-33 2.5E-37 201.5 17.5 167 3-169 3-173 (178)
50 3reg_A RHO-like small GTPase; 100.0 4E-32 1.4E-36 200.6 21.4 166 3-170 20-189 (194)
51 3ihw_A Centg3; RAS, centaurin, 100.0 9.6E-32 3.3E-36 197.3 23.2 162 3-171 17-182 (184)
52 1x3s_A RAS-related protein RAB 100.0 8.3E-32 2.8E-36 198.6 22.9 165 5-170 14-179 (195)
53 1u8z_A RAS-related protein RAL 100.0 5E-32 1.7E-36 194.8 21.2 163 5-168 3-166 (168)
54 2yc2_C IFT27, small RAB-relate 100.0 2.8E-33 9.4E-38 208.6 15.1 174 1-174 15-197 (208)
55 2a9k_A RAS-related protein RAL 100.0 1E-31 3.5E-36 196.7 23.2 167 5-172 17-184 (187)
56 1ky3_A GTP-binding protein YPT 100.0 1.4E-32 4.7E-37 200.5 18.4 169 3-171 5-180 (182)
57 2gf0_A GTP-binding protein DI- 100.0 1.5E-32 5.1E-37 203.3 18.8 163 4-168 6-170 (199)
58 1c1y_A RAS-related protein RAP 100.0 6E-32 2E-36 194.5 21.3 161 6-167 3-165 (167)
59 1kao_A RAP2A; GTP-binding prot 100.0 6.8E-32 2.3E-36 193.9 21.1 162 6-168 3-165 (167)
60 3q72_A GTP-binding protein RAD 100.0 5.1E-32 1.7E-36 194.9 20.2 163 6-170 2-165 (166)
61 3q3j_B RHO-related GTP-binding 100.0 3.6E-32 1.2E-36 204.2 19.3 168 4-173 25-207 (214)
62 2q3h_A RAS homolog gene family 100.0 1.2E-31 4E-36 199.1 21.1 168 3-172 17-198 (201)
63 2atx_A Small GTP binding prote 100.0 1.4E-31 4.8E-36 197.6 21.0 163 4-168 16-192 (194)
64 2g3y_A GTP-binding protein GEM 100.0 1.1E-31 3.9E-36 200.8 20.4 167 3-170 34-204 (211)
65 1m7b_A RND3/RHOE small GTP-bin 100.0 1.5E-31 5E-36 196.1 19.3 165 3-169 4-183 (184)
66 2f9l_A RAB11B, member RAS onco 100.0 1.3E-30 4.6E-35 193.3 24.1 174 2-175 1-174 (199)
67 1gwn_A RHO-related GTP-binding 100.0 2.7E-31 9.3E-36 198.1 18.9 164 4-169 26-204 (205)
68 2erx_A GTP-binding protein DI- 100.0 6E-31 2E-35 190.0 20.0 162 5-167 2-165 (172)
69 2ce2_X GTPase HRAS; signaling 100.0 3.4E-30 1.2E-34 184.7 23.1 161 6-168 3-164 (166)
70 3con_A GTPase NRAS; structural 100.0 2.6E-30 8.9E-35 190.1 22.9 165 5-171 20-185 (190)
71 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.1E-30 3.9E-35 191.0 20.8 162 5-168 4-179 (186)
72 2gco_A H9, RHO-related GTP-bin 100.0 1.4E-30 5E-35 193.4 21.4 164 4-169 23-200 (201)
73 2fv8_A H6, RHO-related GTP-bin 100.0 1.6E-30 5.3E-35 194.1 21.2 164 4-169 23-200 (207)
74 2j1l_A RHO-related GTP-binding 100.0 8.6E-31 2.9E-35 196.6 19.7 164 5-170 33-210 (214)
75 4djt_A GTP-binding nuclear pro 100.0 1.9E-31 6.7E-36 200.4 16.2 170 4-173 9-179 (218)
76 3bwd_D RAC-like GTP-binding pr 100.0 5.4E-32 1.9E-36 197.5 12.6 166 1-168 3-180 (182)
77 3t1o_A Gliding protein MGLA; G 100.0 1.3E-31 4.4E-36 197.8 14.7 168 2-173 10-196 (198)
78 3l0i_B RAS-related protein RAB 100.0 8.2E-34 2.8E-38 210.6 1.1 166 3-168 30-195 (199)
79 2cjw_A GTP-binding protein GEM 100.0 4.1E-30 1.4E-34 189.8 20.9 167 4-171 4-174 (192)
80 4gzl_A RAS-related C3 botulinu 100.0 2E-30 6.8E-35 193.2 17.3 162 4-167 28-203 (204)
81 3gj0_A GTP-binding nuclear pro 100.0 1.1E-30 3.7E-35 196.8 14.3 164 4-170 13-176 (221)
82 1oix_A RAS-related protein RAB 100.0 6E-29 2E-33 183.4 22.8 165 3-167 26-190 (191)
83 4bas_A ADP-ribosylation factor 100.0 2.5E-30 8.7E-35 191.3 14.3 163 4-172 15-192 (199)
84 1r8s_A ADP-ribosylation factor 100.0 3.7E-30 1.3E-34 184.7 10.9 156 7-169 1-162 (164)
85 1m2o_B GTP-binding protein SAR 100.0 6.6E-29 2.3E-33 183.0 17.8 155 5-166 22-189 (190)
86 1upt_A ARL1, ADP-ribosylation 100.0 1.2E-29 4.1E-34 183.2 13.5 159 4-169 5-169 (171)
87 1zd9_A ADP-ribosylation factor 100.0 4E-29 1.4E-33 183.7 16.4 160 4-169 20-185 (188)
88 1f6b_A SAR1; gtpases, N-termin 100.0 2.6E-29 8.8E-34 186.4 15.4 155 5-166 24-196 (198)
89 2h57_A ADP-ribosylation factor 100.0 9.4E-29 3.2E-33 181.9 18.1 159 4-168 19-186 (190)
90 1ksh_A ARF-like protein 2; sma 100.0 1.2E-28 4E-33 180.6 18.3 160 4-170 16-181 (186)
91 1zj6_A ADP-ribosylation factor 100.0 1E-28 3.6E-33 181.2 16.0 162 4-172 14-181 (187)
92 2wkq_A NPH1-1, RAS-related C3 100.0 7.9E-28 2.7E-32 191.3 21.4 163 5-169 154-330 (332)
93 2b6h_A ADP-ribosylation factor 100.0 2.2E-29 7.6E-34 185.8 10.9 158 4-168 27-190 (192)
94 2zej_A Dardarin, leucine-rich 100.0 1.5E-29 5.3E-34 185.4 9.9 163 6-169 2-178 (184)
95 1fzq_A ADP-ribosylation factor 100.0 2.5E-28 8.7E-33 178.5 15.8 159 4-169 14-178 (181)
96 2h17_A ADP-ribosylation factor 100.0 1.6E-28 5.3E-33 179.5 14.4 156 4-166 19-180 (181)
97 1moz_A ARL1, ADP-ribosylation 100.0 3.8E-28 1.3E-32 177.3 15.5 161 4-171 16-182 (183)
98 3th5_A RAS-related C3 botulinu 99.9 5.9E-31 2E-35 195.9 0.0 162 4-167 28-203 (204)
99 2x77_A ADP-ribosylation factor 100.0 3.1E-29 1.1E-33 184.3 9.2 159 4-169 20-184 (189)
100 3llu_A RAS-related GTP-binding 100.0 1.8E-28 6.1E-33 181.4 11.5 161 4-167 18-195 (196)
101 2wji_A Ferrous iron transport 100.0 3E-27 1E-31 170.2 14.9 153 6-167 3-163 (165)
102 2fh5_B SR-beta, signal recogni 99.9 1.4E-27 4.6E-32 178.9 12.7 158 4-166 5-213 (214)
103 2qu8_A Putative nucleolar GTP- 99.9 1.2E-26 4.2E-31 175.5 17.8 169 4-175 27-211 (228)
104 2lkc_A Translation initiation 99.9 5.7E-27 1.9E-31 170.2 12.7 160 4-172 6-174 (178)
105 3c5h_A Glucocorticoid receptor 99.9 4.3E-28 1.5E-32 186.5 6.7 164 3-168 16-254 (255)
106 3r7w_A Gtpase1, GTP-binding pr 99.9 9.9E-27 3.4E-31 183.4 14.2 162 5-170 2-182 (307)
107 1svi_A GTP-binding protein YSX 99.9 3.3E-26 1.1E-30 168.7 13.9 158 3-167 20-193 (195)
108 3o47_A ADP-ribosylation factor 99.9 1.9E-26 6.4E-31 183.4 12.4 158 5-169 164-327 (329)
109 2wjg_A FEOB, ferrous iron tran 99.9 4.6E-26 1.6E-30 167.0 13.1 157 5-170 6-170 (188)
110 2cxx_A Probable GTP-binding pr 99.9 3.1E-26 1.1E-30 168.0 11.4 156 7-171 2-186 (190)
111 3lvq_E ARF-GAP with SH3 domain 99.9 2.4E-25 8.2E-30 186.3 17.6 163 4-173 320-488 (497)
112 2dyk_A GTP-binding protein; GT 99.9 8E-26 2.8E-30 161.4 12.4 150 7-167 2-160 (161)
113 3r7w_B Gtpase2, GTP-binding pr 99.9 3.4E-27 1.2E-31 185.2 3.8 159 8-173 1-178 (331)
114 3a1s_A Iron(II) transport prot 99.9 3E-25 1E-29 170.8 14.5 156 4-168 3-166 (258)
115 2gj8_A MNME, tRNA modification 99.9 7.4E-26 2.5E-30 164.1 10.1 153 5-167 3-164 (172)
116 3iev_A GTP-binding protein ERA 99.9 1E-24 3.5E-29 172.0 16.9 161 3-167 7-180 (308)
117 3dpu_A RAB family protein; roc 99.9 3.9E-26 1.3E-30 192.6 8.8 164 3-170 38-209 (535)
118 3pqc_A Probable GTP-binding pr 99.9 8.8E-25 3E-29 160.8 13.6 155 4-168 21-193 (195)
119 3b1v_A Ferrous iron uptake tra 99.9 2.5E-25 8.6E-30 172.3 10.9 153 5-167 2-162 (272)
120 3iby_A Ferrous iron transport 99.9 2.6E-25 9E-30 170.9 10.2 151 7-166 2-164 (256)
121 4dhe_A Probable GTP-binding pr 99.9 8E-25 2.7E-29 164.7 11.1 165 4-172 27-214 (223)
122 3k53_A Ferrous iron transport 99.9 2.4E-24 8E-29 167.1 12.9 155 6-168 3-165 (271)
123 3i8s_A Ferrous iron transport 99.9 1.2E-24 4E-29 169.0 9.1 154 6-168 3-168 (274)
124 1nrj_B SR-beta, signal recogni 99.9 9.8E-25 3.4E-29 163.7 6.5 143 4-155 10-170 (218)
125 2hjg_A GTP-binding protein ENG 99.9 1.5E-23 5.3E-28 172.6 14.0 160 5-170 174-350 (436)
126 4dcu_A GTP-binding protein ENG 99.9 5.1E-23 1.7E-27 170.4 14.1 163 4-172 193-372 (456)
127 2e87_A Hypothetical protein PH 99.9 1.8E-22 6E-27 162.3 16.5 163 5-172 166-339 (357)
128 1mky_A Probable GTP-binding pr 99.9 5.3E-23 1.8E-27 169.6 12.5 179 7-195 2-195 (439)
129 3gee_A MNME, tRNA modification 99.9 6.8E-23 2.3E-27 169.7 13.0 156 6-168 233-397 (476)
130 1wf3_A GTP-binding protein; GT 99.9 5E-23 1.7E-27 161.6 11.5 154 5-167 6-171 (301)
131 1cip_A Protein (guanine nucleo 99.9 4.6E-23 1.6E-27 164.7 9.6 119 54-172 192-347 (353)
132 1s0u_A EIF-2-gamma, translatio 99.9 1.5E-21 5.2E-26 159.4 18.0 161 1-167 3-196 (408)
133 1lnz_A SPO0B-associated GTP-bi 99.9 1E-22 3.4E-27 162.2 9.2 157 7-168 159-329 (342)
134 3sjy_A Translation initiation 99.9 6.3E-21 2.1E-25 155.6 19.8 163 2-167 4-190 (403)
135 2hjg_A GTP-binding protein ENG 99.9 1.2E-23 4.3E-28 173.1 3.9 178 7-195 4-190 (436)
136 2ywe_A GTP-binding protein LEP 99.9 1.7E-21 5.8E-26 164.8 16.7 162 1-168 1-183 (600)
137 1xzp_A Probable tRNA modificat 99.9 5.9E-22 2E-26 164.2 13.6 154 6-170 243-406 (482)
138 3qq5_A Small GTP-binding prote 99.9 2.6E-23 8.8E-28 169.6 5.0 156 4-168 32-195 (423)
139 3cb4_D GTP-binding protein LEP 99.9 2E-21 7E-26 164.5 16.0 159 4-168 2-181 (599)
140 3lxx_A GTPase IMAP family memb 99.9 3.1E-21 1.1E-25 146.8 14.8 161 4-168 27-213 (239)
141 1kk1_A EIF2gamma; initiation o 99.9 1.8E-21 6.1E-26 159.1 14.1 159 3-167 7-198 (410)
142 1wb1_A Translation elongation 99.9 2.4E-21 8.2E-26 161.1 14.7 155 5-168 18-188 (482)
143 3ohm_A Guanine nucleotide-bind 99.9 2.4E-22 8.2E-27 158.5 8.2 118 54-171 166-320 (327)
144 2xtz_A Guanine nucleotide-bind 99.9 1.1E-21 3.7E-26 156.7 11.8 121 53-173 181-349 (354)
145 3p26_A Elongation factor 1 alp 99.9 1.1E-21 3.8E-26 163.4 11.5 154 4-159 31-228 (483)
146 2qtf_A Protein HFLX, GTP-bindi 99.9 1.4E-20 4.9E-25 151.1 17.4 160 8-170 181-355 (364)
147 3t5d_A Septin-7; GTP-binding p 99.9 6.8E-22 2.3E-26 153.5 8.8 160 3-166 5-201 (274)
148 3j2k_7 ERF3, eukaryotic polype 99.9 8.2E-21 2.8E-25 156.3 15.6 153 4-161 15-217 (439)
149 3lxw_A GTPase IMAP family memb 99.9 5.5E-21 1.9E-25 146.2 13.3 164 4-169 19-208 (247)
150 1zcb_A G alpha I/13; GTP-bindi 99.9 1.5E-21 5.1E-26 156.5 9.7 120 54-173 200-357 (362)
151 1mky_A Probable GTP-binding pr 99.9 3.4E-20 1.2E-24 152.8 18.0 160 5-170 179-356 (439)
152 3geh_A MNME, tRNA modification 99.8 1.3E-21 4.5E-26 161.5 8.3 153 5-169 223-384 (462)
153 1ega_A Protein (GTP-binding pr 99.8 1.8E-21 6.1E-26 152.9 8.7 156 5-167 7-173 (301)
154 4dcu_A GTP-binding protein ENG 99.8 2.9E-22 1E-26 165.8 4.2 180 6-195 23-210 (456)
155 2xtp_A GTPase IMAP family memb 99.8 5E-21 1.7E-25 147.4 10.8 161 5-169 21-208 (260)
156 4fid_A G protein alpha subunit 99.8 3.3E-21 1.1E-25 152.5 9.5 120 50-169 156-328 (340)
157 2qag_A Septin-2, protein NEDD5 99.8 6E-22 2.1E-26 159.2 5.0 167 4-176 35-240 (361)
158 2ged_A SR-beta, signal recogni 99.8 1E-20 3.4E-25 139.1 10.9 115 4-127 46-172 (193)
159 3izy_P Translation initiation 99.8 4.5E-23 1.5E-27 172.3 -2.0 159 5-168 3-167 (537)
160 2c78_A Elongation factor TU-A; 99.8 2.4E-21 8.2E-26 158.1 7.9 148 4-155 9-180 (405)
161 1jny_A EF-1-alpha, elongation 99.8 2.6E-21 8.8E-26 159.2 7.8 157 1-161 1-205 (435)
162 1d2e_A Elongation factor TU (E 99.8 6.1E-21 2.1E-25 155.3 9.9 158 5-166 2-192 (397)
163 2elf_A Protein translation elo 99.8 7.4E-21 2.5E-25 153.1 10.3 147 8-170 23-181 (370)
164 3tr5_A RF-3, peptide chain rel 99.8 1E-20 3.4E-25 158.6 9.7 115 5-125 12-148 (528)
165 1g7s_A Translation initiation 99.8 3.5E-20 1.2E-24 157.1 13.1 160 5-171 4-220 (594)
166 1zun_B Sulfate adenylate trans 99.8 4.8E-20 1.6E-24 151.7 13.3 154 4-161 22-216 (434)
167 1azs_C GS-alpha; complex (lyas 99.8 1.2E-19 4E-24 146.7 14.8 119 55-173 217-389 (402)
168 1r5b_A Eukaryotic peptide chai 99.8 5.2E-21 1.8E-25 158.6 5.1 155 4-160 41-243 (467)
169 3avx_A Elongation factor TS, e 99.8 7.4E-20 2.5E-24 162.3 10.0 159 4-166 294-483 (1289)
170 3izq_1 HBS1P, elongation facto 99.8 1.4E-20 4.6E-25 160.3 4.9 156 4-159 165-362 (611)
171 1pui_A ENGB, probable GTP-bind 99.8 2.7E-19 9.2E-24 133.1 11.3 156 4-168 24-198 (210)
172 2aka_B Dynamin-1; fusion prote 99.8 7.2E-20 2.5E-24 143.5 8.0 161 5-168 25-252 (299)
173 1f60_A Elongation factor EEF1A 99.8 1.7E-19 5.9E-24 149.1 10.2 154 1-159 1-202 (458)
174 1zo1_I IF2, translation initia 99.8 1.5E-21 5.3E-26 161.8 -2.6 155 5-165 3-163 (501)
175 2dy1_A Elongation factor G; tr 99.8 2.5E-18 8.5E-23 148.0 14.8 117 4-124 7-139 (665)
176 3def_A T7I23.11 protein; chlor 99.8 4.4E-18 1.5E-22 131.1 14.6 126 5-132 35-172 (262)
177 1udx_A The GTP-binding protein 99.8 5.3E-18 1.8E-22 138.0 12.9 160 7-170 158-326 (416)
178 3t34_A Dynamin-related protein 99.8 9.2E-19 3.1E-23 140.8 7.8 155 6-162 34-254 (360)
179 2j69_A Bacterial dynamin-like 99.8 7E-18 2.4E-22 145.8 13.6 162 5-169 68-325 (695)
180 3mca_A HBS1, elongation factor 99.8 3.9E-20 1.3E-24 157.1 -0.7 149 4-157 175-371 (592)
181 1dar_A EF-G, elongation factor 99.8 7.1E-18 2.4E-22 145.6 13.1 116 4-125 10-143 (691)
182 2h5e_A Peptide chain release f 99.8 1.1E-17 3.8E-22 140.2 13.7 117 5-125 12-148 (529)
183 2qnr_A Septin-2, protein NEDD5 99.8 2.7E-19 9.4E-24 140.4 3.6 164 4-172 16-217 (301)
184 1h65_A Chloroplast outer envel 99.8 7.1E-18 2.4E-22 130.5 11.4 125 5-132 38-175 (270)
185 1jwy_B Dynamin A GTPase domain 99.7 1.3E-17 4.4E-22 131.7 11.4 161 5-168 23-261 (315)
186 2rdo_7 EF-G, elongation factor 99.7 1.3E-16 4.3E-21 138.1 17.4 118 4-125 8-148 (704)
187 2xex_A Elongation factor G; GT 99.7 3.6E-17 1.2E-21 141.3 13.3 116 4-125 8-141 (693)
188 1wxq_A GTP-binding protein; st 99.7 4.5E-18 1.5E-22 138.0 6.0 85 7-91 1-114 (397)
189 2qag_C Septin-7; cell cycle, c 99.7 1.1E-17 3.7E-22 136.3 7.0 157 5-165 30-223 (418)
190 1u0l_A Probable GTPase ENGC; p 99.7 5.9E-18 2E-22 132.9 3.6 133 21-164 32-168 (301)
191 2wsm_A Hydrogenase expression/ 99.7 4.1E-17 1.4E-21 122.3 5.5 156 5-171 29-216 (221)
192 3vqt_A RF-3, peptide chain rel 99.7 8.9E-16 3.1E-20 129.2 12.6 115 5-125 30-166 (548)
193 1jal_A YCHF protein; nucleotid 99.7 2.8E-15 9.7E-20 119.6 14.8 146 7-152 3-240 (363)
194 1n0u_A EF-2, elongation factor 99.6 8.3E-16 2.8E-20 135.3 10.6 117 4-124 17-163 (842)
195 2x2e_A Dynamin-1; nitration, h 99.6 3.5E-16 1.2E-20 125.4 6.3 158 5-165 30-254 (353)
196 2hf9_A Probable hydrogenase ni 99.6 1.3E-17 4.5E-22 125.4 -3.2 153 5-168 37-223 (226)
197 2qpt_A EH domain-containing pr 99.6 1.7E-15 5.8E-20 127.7 7.6 119 4-125 63-232 (550)
198 3p32_A Probable GTPase RV1496/ 99.6 1.3E-15 4.4E-20 122.2 6.2 104 55-169 172-284 (355)
199 2dby_A GTP-binding protein; GD 99.6 7.6E-15 2.6E-19 117.7 10.1 156 7-162 2-255 (368)
200 4a9a_A Ribosome-interacting GT 99.6 1.4E-13 4.8E-18 110.4 16.2 152 6-161 72-240 (376)
201 3j25_A Tetracycline resistance 99.5 3.2E-15 1.1E-19 128.1 4.4 115 7-125 3-133 (638)
202 4fn5_A EF-G 1, elongation fact 99.5 4.1E-13 1.4E-17 116.5 17.0 117 4-124 11-150 (709)
203 1yrb_A ATP(GTP)binding protein 99.5 1.3E-13 4.3E-18 105.8 10.8 111 55-168 109-256 (262)
204 2www_A Methylmalonic aciduria 99.5 3.3E-13 1.1E-17 107.8 13.1 103 55-169 167-279 (349)
205 2p67_A LAO/AO transport system 99.5 2.4E-14 8.2E-19 114.2 5.7 103 55-168 149-260 (341)
206 3zvr_A Dynamin-1; hydrolase, D 99.5 5.6E-14 1.9E-18 121.3 8.0 156 5-166 50-275 (772)
207 2yv5_A YJEQ protein; hydrolase 99.4 8.7E-13 3E-17 103.4 7.7 97 65-164 66-164 (302)
208 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 2.3E-11 7.9E-16 98.1 15.3 85 6-90 20-127 (392)
209 2qm8_A GTPase/ATPase; G protei 99.3 1.8E-12 6.2E-17 103.1 7.8 104 54-168 147-260 (337)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 1.1E-12 3.7E-17 105.7 5.8 88 5-92 21-130 (396)
211 3l82_B F-box only protein 4; T 99.3 6.2E-12 2.1E-16 92.1 6.2 104 62-168 109-222 (227)
212 3l2o_B F-box only protein 4; s 99.1 1.5E-10 5E-15 88.8 8.7 105 62-169 194-308 (312)
213 3h2y_A GTPase family protein; 99.0 5.8E-10 2E-14 89.6 8.0 96 64-166 55-157 (368)
214 1puj_A YLQF, conserved hypothe 98.9 1.6E-09 5.4E-14 84.0 6.8 125 60-194 4-134 (282)
215 2j37_W Signal recognition part 98.9 1.9E-09 6.4E-14 89.7 6.9 151 5-166 100-310 (504)
216 2qag_B Septin-6, protein NEDD5 98.9 3.3E-08 1.1E-12 80.4 13.8 139 7-150 43-217 (427)
217 3ec1_A YQEH GTPase; atnos1, at 98.9 1.6E-09 5.4E-14 87.1 6.0 98 63-167 56-160 (369)
218 3ec1_A YQEH GTPase; atnos1, at 98.9 1.5E-10 5E-15 93.2 -1.1 136 7-153 163-315 (369)
219 3sop_A Neuronal-specific septi 98.8 1.4E-08 4.9E-13 78.1 8.5 137 6-147 2-178 (270)
220 1tq4_A IIGP1, interferon-induc 98.8 1.1E-07 3.7E-12 77.3 12.6 154 7-167 70-251 (413)
221 3h2y_A GTPase family protein; 98.8 1.3E-09 4.3E-14 87.7 0.7 133 7-148 161-309 (368)
222 1puj_A YLQF, conserved hypothe 98.5 8E-08 2.7E-12 74.4 5.3 58 5-66 119-176 (282)
223 3dm5_A SRP54, signal recogniti 98.5 2E-07 6.7E-12 76.2 7.3 86 55-150 183-274 (443)
224 3cnl_A YLQF, putative uncharac 98.5 6.1E-08 2.1E-12 74.3 2.6 57 7-67 100-156 (262)
225 3cnl_A YLQF, putative uncharac 98.4 3.1E-08 1.1E-12 75.9 0.6 94 62-166 4-98 (262)
226 3kl4_A SRP54, signal recogniti 98.3 2.2E-07 7.6E-12 75.8 3.1 87 54-150 179-273 (433)
227 2v3c_C SRP54, signal recogniti 98.3 2.9E-06 9.8E-11 69.5 9.1 84 54-148 180-271 (432)
228 1f5n_A Interferon-induced guan 98.3 1E-06 3.4E-11 74.6 6.1 63 4-66 36-102 (592)
229 1j8m_F SRP54, signal recogniti 98.2 4.9E-06 1.7E-10 64.8 7.9 92 54-158 180-280 (297)
230 1t9h_A YLOQ, probable GTPase E 98.1 7.4E-07 2.5E-11 69.6 2.0 88 71-161 79-169 (307)
231 3szr_A Interferon-induced GTP- 98.1 7.2E-06 2.5E-10 70.0 8.0 25 7-31 46-70 (608)
232 3e70_C DPA, signal recognition 98.0 2E-05 6.8E-10 62.2 8.0 91 56-158 213-309 (328)
233 2rcn_A Probable GTPase ENGC; Y 97.9 3E-05 1E-09 61.7 8.2 83 76-162 128-212 (358)
234 1bif_A 6-phosphofructo-2-kinas 97.9 1E-06 3.4E-11 73.1 -1.6 109 5-118 38-156 (469)
235 3q5d_A Atlastin-1; G protein, 97.6 0.00011 3.6E-09 60.3 6.0 25 5-29 66-90 (447)
236 1ye8_A Protein THEP1, hypothet 97.5 5.6E-05 1.9E-09 54.3 3.3 24 7-30 1-24 (178)
237 2xxa_A Signal recognition part 97.4 0.00037 1.3E-08 57.0 7.5 84 54-148 183-273 (433)
238 3asz_A Uridine kinase; cytidin 97.4 0.0001 3.5E-09 54.0 3.5 29 1-29 1-29 (211)
239 1kgd_A CASK, peripheral plasma 97.4 0.0001 3.6E-09 52.8 3.2 22 8-29 7-28 (180)
240 2j41_A Guanylate kinase; GMP, 97.4 0.00012 4E-09 53.4 3.4 30 1-30 1-30 (207)
241 1t9h_A YLOQ, probable GTPase E 97.3 4.7E-05 1.6E-09 59.4 1.2 23 8-30 175-197 (307)
242 1lvg_A Guanylate kinase, GMP k 97.3 0.00011 3.9E-09 53.5 3.2 22 8-29 6-27 (198)
243 1zp6_A Hypothetical protein AT 97.3 0.00016 5.5E-09 52.1 3.6 25 5-29 8-32 (191)
244 2rcn_A Probable GTPase ENGC; Y 97.3 0.00018 6.1E-09 57.3 4.1 24 8-31 217-240 (358)
245 3a00_A Guanylate kinase, GMP k 97.3 0.00014 4.8E-09 52.4 3.1 21 9-29 4-24 (186)
246 3tr0_A Guanylate kinase, GMP k 97.3 0.00015 5.2E-09 52.7 3.2 22 8-29 9-30 (205)
247 2yv5_A YJEQ protein; hydrolase 97.3 0.00049 1.7E-08 53.6 6.1 22 8-30 167-188 (302)
248 1znw_A Guanylate kinase, GMP k 97.2 0.00017 5.8E-09 52.9 3.1 23 8-30 22-44 (207)
249 4eun_A Thermoresistant glucoki 97.2 0.00018 6.2E-09 52.4 3.3 25 5-29 28-52 (200)
250 1s96_A Guanylate kinase, GMP k 97.2 0.0002 6.7E-09 53.2 3.2 23 8-30 18-40 (219)
251 1z6g_A Guanylate kinase; struc 97.2 0.00021 7.3E-09 52.9 3.1 23 8-30 25-47 (218)
252 1htw_A HI0065; nucleotide-bind 97.2 0.00023 8E-09 50.0 3.1 23 8-30 35-57 (158)
253 4gp7_A Metallophosphoesterase; 97.2 0.00018 6.1E-09 51.1 2.6 20 8-27 11-30 (171)
254 2ffh_A Protein (FFH); SRP54, s 97.2 0.00098 3.3E-08 54.3 7.2 85 55-149 181-271 (425)
255 3ney_A 55 kDa erythrocyte memb 97.1 0.00031 1.1E-08 51.2 3.6 23 7-29 20-42 (197)
256 3tif_A Uncharacterized ABC tra 97.1 0.00025 8.4E-09 53.2 3.0 23 8-30 33-55 (235)
257 3c8u_A Fructokinase; YP_612366 97.1 0.00025 8.7E-09 52.0 2.9 25 5-29 21-45 (208)
258 3tau_A Guanylate kinase, GMP k 97.1 0.0003 1E-08 51.6 3.3 24 7-30 9-32 (208)
259 2pcj_A ABC transporter, lipopr 97.1 0.00029 1E-08 52.4 2.9 23 8-30 32-54 (224)
260 1knq_A Gluconate kinase; ALFA/ 97.0 0.00052 1.8E-08 48.6 4.0 24 6-29 8-31 (175)
261 2onk_A Molybdate/tungstate ABC 97.0 0.00035 1.2E-08 52.5 3.2 23 8-30 26-48 (240)
262 1kag_A SKI, shikimate kinase I 97.0 0.00038 1.3E-08 49.2 3.2 23 7-29 5-27 (173)
263 2bdt_A BH3686; alpha-beta prot 97.0 0.00038 1.3E-08 50.1 3.1 21 8-28 4-24 (189)
264 1ex7_A Guanylate kinase; subst 97.0 0.00039 1.3E-08 50.2 3.2 21 9-29 4-24 (186)
265 1sgw_A Putative ABC transporte 97.0 0.00038 1.3E-08 51.4 3.0 23 8-30 37-59 (214)
266 3gfo_A Cobalt import ATP-bindi 97.0 0.00037 1.3E-08 53.5 3.0 23 8-30 36-58 (275)
267 1b0u_A Histidine permease; ABC 97.0 0.00037 1.3E-08 53.1 3.0 23 8-30 34-56 (262)
268 1y63_A LMAJ004144AAA protein; 97.0 0.00054 1.9E-08 49.1 3.6 28 2-29 6-33 (184)
269 2qor_A Guanylate kinase; phosp 97.0 0.00045 1.5E-08 50.4 3.2 23 7-29 13-35 (204)
270 2i3b_A HCR-ntpase, human cance 97.0 0.00043 1.5E-08 50.1 3.0 22 8-29 3-24 (189)
271 1g6h_A High-affinity branched- 97.0 0.00041 1.4E-08 52.8 3.0 23 8-30 35-57 (257)
272 2cbz_A Multidrug resistance-as 97.0 0.00045 1.6E-08 51.8 3.2 22 8-29 33-54 (237)
273 1cke_A CK, MSSA, protein (cyti 97.0 0.00052 1.8E-08 50.7 3.4 22 7-28 6-27 (227)
274 4g1u_C Hemin import ATP-bindin 97.0 0.00041 1.4E-08 53.0 2.9 23 8-30 39-61 (266)
275 3lw7_A Adenylate kinase relate 96.9 0.00049 1.7E-08 48.4 3.1 20 7-26 2-21 (179)
276 2olj_A Amino acid ABC transpor 96.9 0.00045 1.5E-08 52.7 3.0 23 8-30 52-74 (263)
277 1qf9_A UMP/CMP kinase, protein 96.9 0.00073 2.5E-08 48.4 4.1 28 1-28 1-28 (194)
278 1mv5_A LMRA, multidrug resista 96.9 0.0005 1.7E-08 51.8 3.3 23 8-30 30-52 (243)
279 2pze_A Cystic fibrosis transme 96.9 0.00051 1.7E-08 51.3 3.3 23 8-30 36-58 (229)
280 1ji0_A ABC transporter; ATP bi 96.9 0.00046 1.6E-08 51.9 3.0 23 8-30 34-56 (240)
281 2ff7_A Alpha-hemolysin translo 96.9 0.00051 1.7E-08 51.9 3.2 23 8-30 37-59 (247)
282 1vpl_A ABC transporter, ATP-bi 96.9 0.00047 1.6E-08 52.4 3.0 23 8-30 43-65 (256)
283 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00051 1.7E-08 52.0 3.2 22 8-29 31-52 (250)
284 2qi9_C Vitamin B12 import ATP- 96.9 0.00048 1.7E-08 52.1 3.0 23 8-30 28-50 (249)
285 2bbw_A Adenylate kinase 4, AK4 96.9 0.00057 2E-08 51.4 3.4 21 7-27 28-48 (246)
286 2zu0_C Probable ATP-dependent 96.9 0.00055 1.9E-08 52.3 3.2 22 8-29 48-69 (267)
287 3kb2_A SPBC2 prophage-derived 96.9 0.00062 2.1E-08 47.9 3.3 22 8-29 3-24 (173)
288 2eyu_A Twitching motility prot 96.9 0.00056 1.9E-08 52.1 3.2 22 8-29 27-48 (261)
289 1ly1_A Polynucleotide kinase; 96.9 0.00074 2.5E-08 47.9 3.6 22 7-28 3-24 (181)
290 3b85_A Phosphate starvation-in 96.9 0.00038 1.3E-08 51.2 2.2 22 8-29 24-45 (208)
291 2ihy_A ABC transporter, ATP-bi 96.9 0.00058 2E-08 52.6 3.3 23 8-30 49-71 (279)
292 2ghi_A Transport protein; mult 96.9 0.00059 2E-08 52.0 3.2 23 8-30 48-70 (260)
293 3uie_A Adenylyl-sulfate kinase 96.9 0.0005 1.7E-08 50.0 2.7 24 6-29 25-48 (200)
294 3fb4_A Adenylate kinase; psych 96.9 0.00059 2E-08 50.1 3.1 22 7-28 1-22 (216)
295 2v9p_A Replication protein E1; 96.9 0.00065 2.2E-08 52.9 3.3 22 8-29 128-149 (305)
296 1nn5_A Similar to deoxythymidy 96.9 0.00068 2.3E-08 49.6 3.3 25 4-28 7-31 (215)
297 2ixe_A Antigen peptide transpo 96.9 0.00057 2E-08 52.4 3.0 23 8-30 47-69 (271)
298 2nq2_C Hypothetical ABC transp 96.8 0.00059 2E-08 51.7 3.0 23 8-30 33-55 (253)
299 3dl0_A Adenylate kinase; phosp 96.8 0.00064 2.2E-08 50.0 3.1 22 7-28 1-22 (216)
300 2if2_A Dephospho-COA kinase; a 96.8 0.00068 2.3E-08 49.3 3.2 22 7-28 2-23 (204)
301 2yz2_A Putative ABC transporte 96.8 0.00061 2.1E-08 52.0 3.0 23 8-30 35-57 (266)
302 3ec2_A DNA replication protein 96.8 0.00066 2.3E-08 48.4 2.9 23 7-29 39-61 (180)
303 3vaa_A Shikimate kinase, SK; s 96.8 0.00079 2.7E-08 48.9 3.3 22 7-28 26-47 (199)
304 1jjv_A Dephospho-COA kinase; P 96.8 0.00089 3.1E-08 48.8 3.6 22 7-28 3-24 (206)
305 3t61_A Gluconokinase; PSI-biol 96.8 0.00074 2.5E-08 49.1 3.1 23 7-29 19-41 (202)
306 3sr0_A Adenylate kinase; phosp 96.8 0.00082 2.8E-08 49.3 3.2 22 7-28 1-22 (206)
307 2pjz_A Hypothetical protein ST 96.8 0.00079 2.7E-08 51.3 3.3 23 8-30 32-54 (263)
308 1qhx_A CPT, protein (chloramph 96.8 0.00084 2.9E-08 47.6 3.2 23 7-29 4-26 (178)
309 4a74_A DNA repair and recombin 96.8 0.00076 2.6E-08 49.8 3.1 23 8-30 27-49 (231)
310 2ehv_A Hypothetical protein PH 96.8 0.00079 2.7E-08 50.4 3.2 20 8-27 32-51 (251)
311 2jaq_A Deoxyguanosine kinase; 96.8 0.00086 2.9E-08 48.5 3.3 21 8-28 2-22 (205)
312 3aez_A Pantothenate kinase; tr 96.8 0.00078 2.7E-08 52.7 3.2 25 5-29 89-113 (312)
313 2jeo_A Uridine-cytidine kinase 96.8 0.00099 3.4E-08 50.1 3.7 25 5-29 24-48 (245)
314 3lnc_A Guanylate kinase, GMP k 96.7 0.00049 1.7E-08 51.2 1.8 22 8-29 29-51 (231)
315 3cm0_A Adenylate kinase; ATP-b 96.7 0.0012 4.2E-08 47.1 3.8 23 6-28 4-26 (186)
316 1u0l_A Probable GTPase ENGC; p 96.7 0.00099 3.4E-08 51.8 3.5 24 8-31 171-194 (301)
317 1nks_A Adenylate kinase; therm 96.7 0.0011 3.7E-08 47.5 3.5 22 7-28 2-23 (194)
318 1np6_A Molybdopterin-guanine d 96.7 0.00099 3.4E-08 47.5 3.2 23 7-29 7-29 (174)
319 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00088 3E-08 53.3 3.1 23 8-30 32-54 (359)
320 2v54_A DTMP kinase, thymidylat 96.7 0.0013 4.4E-08 47.7 3.8 24 6-29 4-27 (204)
321 1e4v_A Adenylate kinase; trans 96.7 0.00099 3.4E-08 48.9 3.2 22 7-28 1-22 (214)
322 2plr_A DTMP kinase, probable t 96.7 0.0014 4.7E-08 47.7 3.8 24 6-29 4-27 (213)
323 2bbs_A Cystic fibrosis transme 96.7 0.00098 3.3E-08 51.6 3.1 23 8-30 66-88 (290)
324 2qt1_A Nicotinamide riboside k 96.7 0.0016 5.6E-08 47.4 4.1 25 5-29 20-44 (207)
325 1z47_A CYSA, putative ABC-tran 96.6 0.0011 3.6E-08 52.8 3.2 23 8-30 43-65 (355)
326 1lw7_A Transcriptional regulat 96.6 0.0009 3.1E-08 53.4 2.8 25 6-30 170-194 (365)
327 3co5_A Putative two-component 96.6 0.0041 1.4E-07 42.6 5.9 23 7-29 28-50 (143)
328 3tlx_A Adenylate kinase 2; str 96.6 0.0015 5E-08 49.2 3.8 24 5-28 28-51 (243)
329 2rhm_A Putative kinase; P-loop 96.6 0.0014 5E-08 46.9 3.7 23 6-28 5-27 (193)
330 3tui_C Methionine import ATP-b 96.6 0.0011 3.8E-08 52.9 3.2 23 8-30 56-78 (366)
331 1kht_A Adenylate kinase; phosp 96.6 0.0012 4.2E-08 47.2 3.3 22 7-28 4-25 (192)
332 2yyz_A Sugar ABC transporter, 96.6 0.0011 3.8E-08 52.8 3.2 23 8-30 31-53 (359)
333 3trf_A Shikimate kinase, SK; a 96.6 0.0013 4.6E-08 46.9 3.4 22 7-28 6-27 (185)
334 3nh6_A ATP-binding cassette SU 96.6 0.00069 2.4E-08 52.8 1.9 22 8-29 82-103 (306)
335 3rlf_A Maltose/maltodextrin im 96.6 0.0011 3.9E-08 53.1 3.2 23 8-30 31-53 (381)
336 2it1_A 362AA long hypothetical 96.6 0.0012 4E-08 52.7 3.2 23 8-30 31-53 (362)
337 2f1r_A Molybdopterin-guanine d 96.6 0.00058 2E-08 48.6 1.3 22 8-29 4-25 (171)
338 1ukz_A Uridylate kinase; trans 96.6 0.0019 6.4E-08 46.9 4.1 24 5-28 14-37 (203)
339 2x8a_A Nuclear valosin-contain 96.6 0.0012 4.1E-08 50.6 3.1 22 8-29 46-67 (274)
340 2pt5_A Shikimate kinase, SK; a 96.6 0.0014 4.9E-08 45.9 3.3 21 8-28 2-22 (168)
341 1aky_A Adenylate kinase; ATP:A 96.6 0.0014 4.9E-08 48.2 3.3 23 6-28 4-26 (220)
342 3jvv_A Twitching mobility prot 96.6 0.0012 4.2E-08 52.5 3.1 22 8-29 125-146 (356)
343 3iij_A Coilin-interacting nucl 96.6 0.0014 4.9E-08 46.6 3.2 22 7-28 12-33 (180)
344 1g29_1 MALK, maltose transport 96.6 0.0013 4.4E-08 52.7 3.2 23 8-30 31-53 (372)
345 1v43_A Sugar-binding transport 96.6 0.0013 4.5E-08 52.6 3.2 23 8-30 39-61 (372)
346 1rz3_A Hypothetical protein rb 96.6 0.002 6.9E-08 46.8 4.0 24 5-28 21-44 (201)
347 1via_A Shikimate kinase; struc 96.5 0.0014 4.7E-08 46.5 3.0 22 8-29 6-27 (175)
348 1uj2_A Uridine-cytidine kinase 96.5 0.0016 5.4E-08 49.2 3.5 26 3-28 19-44 (252)
349 1tev_A UMP-CMP kinase; ploop, 96.5 0.0018 6.3E-08 46.3 3.6 23 6-28 3-25 (196)
350 3tqc_A Pantothenate kinase; bi 96.5 0.0021 7.1E-08 50.4 4.1 25 5-29 91-115 (321)
351 2cdn_A Adenylate kinase; phosp 96.5 0.0017 5.7E-08 47.1 3.3 23 6-28 20-42 (201)
352 1rj9_A FTSY, signal recognitio 96.5 0.0015 5.2E-08 50.9 3.1 84 56-149 186-281 (304)
353 2xb4_A Adenylate kinase; ATP-b 96.5 0.0017 5.8E-08 48.1 3.3 21 8-28 2-22 (223)
354 3b9q_A Chloroplast SRP recepto 96.5 0.0016 5.3E-08 50.7 3.2 22 7-28 101-122 (302)
355 1sq5_A Pantothenate kinase; P- 96.5 0.0015 5.2E-08 50.9 3.1 24 6-29 80-103 (308)
356 1zd8_A GTP:AMP phosphotransfer 96.5 0.0016 5.6E-08 48.2 3.2 23 6-28 7-29 (227)
357 1gvn_B Zeta; postsegregational 96.5 0.002 6.7E-08 49.8 3.7 25 5-29 32-56 (287)
358 1vht_A Dephospho-COA kinase; s 96.5 0.0022 7.5E-08 47.1 3.8 23 6-28 4-26 (218)
359 2kjq_A DNAA-related protein; s 96.5 0.001 3.4E-08 46.2 1.8 23 8-30 38-60 (149)
360 1ixz_A ATP-dependent metallopr 96.5 0.0017 5.8E-08 48.9 3.2 23 8-30 51-73 (254)
361 4e22_A Cytidylate kinase; P-lo 96.5 0.002 6.9E-08 48.7 3.6 21 7-27 28-48 (252)
362 3d31_A Sulfate/molybdate ABC t 96.4 0.0011 3.6E-08 52.7 2.0 23 8-30 28-50 (348)
363 2ze6_A Isopentenyl transferase 96.4 0.0018 6.3E-08 48.9 3.2 21 8-28 3-23 (253)
364 3gd7_A Fusion complex of cysti 96.4 0.0017 5.7E-08 52.4 3.1 22 8-29 49-70 (390)
365 2gza_A Type IV secretion syste 96.4 0.0016 5.6E-08 51.9 3.0 22 8-29 177-198 (361)
366 2ewv_A Twitching motility prot 96.4 0.0019 6.4E-08 51.8 3.3 23 7-29 137-159 (372)
367 1uf9_A TT1252 protein; P-loop, 96.4 0.0026 8.8E-08 46.0 3.8 25 5-29 7-31 (203)
368 2pbr_A DTMP kinase, thymidylat 96.4 0.0021 7.3E-08 46.0 3.2 21 8-28 2-22 (195)
369 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0016 5.4E-08 51.4 2.6 23 8-30 173-195 (330)
370 2c95_A Adenylate kinase 1; tra 96.4 0.0021 7.1E-08 46.2 3.1 23 6-28 9-31 (196)
371 1odf_A YGR205W, hypothetical 3 96.4 0.0028 9.7E-08 49.0 4.0 24 5-28 30-53 (290)
372 2z0h_A DTMP kinase, thymidylat 96.4 0.0022 7.6E-08 46.1 3.2 22 8-29 2-23 (197)
373 1zak_A Adenylate kinase; ATP:A 96.4 0.0017 5.9E-08 47.9 2.7 22 7-28 6-27 (222)
374 1jbk_A CLPB protein; beta barr 96.4 0.0025 8.4E-08 45.2 3.4 23 7-29 44-66 (195)
375 2yvu_A Probable adenylyl-sulfa 96.4 0.003 1E-07 45.2 3.8 24 6-29 13-36 (186)
376 3be4_A Adenylate kinase; malar 96.4 0.0022 7.7E-08 47.1 3.2 23 6-28 5-27 (217)
377 1xjc_A MOBB protein homolog; s 96.3 0.0024 8.3E-08 45.2 3.2 23 7-29 5-27 (169)
378 1p9r_A General secretion pathw 96.3 0.002 7E-08 52.4 3.1 23 8-30 169-191 (418)
379 3kta_A Chromosome segregation 96.3 0.0023 7.9E-08 45.5 3.1 21 8-28 28-48 (182)
380 2bwj_A Adenylate kinase 5; pho 96.3 0.0026 9E-08 45.8 3.3 23 7-29 13-35 (199)
381 1oxx_K GLCV, glucose, ABC tran 96.3 0.001 3.6E-08 52.9 1.2 23 8-30 33-55 (353)
382 3umf_A Adenylate kinase; rossm 96.3 0.0026 8.8E-08 47.0 3.2 21 9-29 32-52 (217)
383 2pez_A Bifunctional 3'-phospho 96.3 0.0026 9E-08 45.2 3.2 24 6-29 5-28 (179)
384 1in4_A RUVB, holliday junction 96.3 0.0023 8E-08 50.4 3.1 22 8-29 53-74 (334)
385 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0025 8.6E-08 46.9 3.1 22 8-29 25-46 (235)
386 1iy2_A ATP-dependent metallopr 96.3 0.0032 1.1E-07 48.1 3.8 23 8-30 75-97 (278)
387 2vp4_A Deoxynucleoside kinase; 96.3 0.0017 5.8E-08 48.3 2.1 24 6-29 20-43 (230)
388 1e6c_A Shikimate kinase; phosp 96.3 0.0028 9.6E-08 44.6 3.2 21 8-28 4-24 (173)
389 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0032 1.1E-07 47.8 3.7 23 6-28 4-26 (260)
390 2wwf_A Thymidilate kinase, put 96.3 0.0032 1.1E-07 45.8 3.6 23 6-28 10-32 (212)
391 1gtv_A TMK, thymidylate kinase 96.3 0.00096 3.3E-08 48.8 0.8 21 8-28 2-22 (214)
392 2p5t_B PEZT; postsegregational 96.2 0.0021 7.2E-08 48.5 2.6 25 5-29 31-55 (253)
393 1ak2_A Adenylate kinase isoenz 96.2 0.003 1E-07 47.0 3.4 24 6-29 16-39 (233)
394 2og2_A Putative signal recogni 96.2 0.0026 8.8E-08 50.7 3.2 22 7-28 158-179 (359)
395 2oap_1 GSPE-2, type II secreti 96.2 0.0024 8.4E-08 53.3 3.1 23 8-30 262-284 (511)
396 4ido_A Atlastin-1; GTPase, GTP 96.2 0.01 3.4E-07 48.6 6.5 24 4-27 65-88 (457)
397 2iyv_A Shikimate kinase, SK; t 96.2 0.0031 1E-07 45.0 3.1 21 8-28 4-24 (184)
398 1zuh_A Shikimate kinase; alpha 96.2 0.0036 1.2E-07 43.9 3.4 23 6-28 7-29 (168)
399 2npi_A Protein CLP1; CLP1-PCF1 96.2 0.0026 9E-08 52.4 3.1 22 8-29 140-161 (460)
400 2yhs_A FTSY, cell division pro 96.1 0.003 1E-07 52.3 3.2 92 55-158 376-479 (503)
401 2grj_A Dephospho-COA kinase; T 96.1 0.0044 1.5E-07 44.9 3.8 26 4-29 10-35 (192)
402 3r20_A Cytidylate kinase; stru 96.1 0.0034 1.1E-07 46.9 3.2 23 6-28 9-31 (233)
403 2obl_A ESCN; ATPase, hydrolase 96.1 0.0034 1.2E-07 49.8 3.3 23 8-30 73-95 (347)
404 1nij_A Hypothetical protein YJ 96.1 0.0023 7.8E-08 50.1 2.2 25 6-30 4-28 (318)
405 1cr0_A DNA primase/helicase; R 96.1 0.0033 1.1E-07 48.5 3.1 22 8-29 37-58 (296)
406 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.004 1.4E-07 43.1 3.2 19 9-27 26-44 (149)
407 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0037 1.3E-07 52.6 3.5 23 8-30 49-71 (538)
408 2vli_A Antibiotic resistance p 96.1 0.0021 7.2E-08 45.7 1.8 24 6-29 5-28 (183)
409 3nwj_A ATSK2; P loop, shikimat 96.1 0.0033 1.1E-07 47.5 2.9 22 7-28 49-70 (250)
410 1lv7_A FTSH; alpha/beta domain 96.1 0.0041 1.4E-07 46.9 3.4 24 6-29 45-68 (257)
411 2p65_A Hypothetical protein PF 96.1 0.003 1E-07 44.6 2.5 23 7-29 44-66 (187)
412 1m7g_A Adenylylsulfate kinase; 96.0 0.0039 1.3E-07 45.6 3.1 23 6-28 25-47 (211)
413 3ozx_A RNAse L inhibitor; ATP 96.0 0.0034 1.2E-07 52.8 3.0 23 8-30 27-49 (538)
414 3bos_A Putative DNA replicatio 96.0 0.0044 1.5E-07 45.8 3.4 24 6-29 52-75 (242)
415 1n0w_A DNA repair protein RAD5 96.0 0.0041 1.4E-07 46.2 3.2 22 8-29 26-47 (243)
416 4eaq_A DTMP kinase, thymidylat 96.0 0.0041 1.4E-07 46.3 3.2 24 6-29 26-49 (229)
417 2cvh_A DNA repair and recombin 96.0 0.0042 1.4E-07 45.4 3.1 21 8-28 22-42 (220)
418 3euj_A Chromosome partition pr 96.0 0.004 1.4E-07 51.5 3.2 21 8-28 31-51 (483)
419 2w58_A DNAI, primosome compone 95.9 0.0051 1.8E-07 44.5 3.4 23 7-29 55-77 (202)
420 3u61_B DNA polymerase accessor 95.9 0.048 1.6E-06 42.4 9.2 21 9-29 51-71 (324)
421 3j16_B RLI1P; ribosome recycli 95.9 0.0042 1.4E-07 53.0 3.2 24 8-31 105-128 (608)
422 2f6r_A COA synthase, bifunctio 95.9 0.0052 1.8E-07 47.2 3.5 23 6-28 75-97 (281)
423 4dzz_A Plasmid partitioning pr 95.9 0.023 7.9E-07 40.9 6.8 85 55-146 76-162 (206)
424 1svm_A Large T antigen; AAA+ f 95.9 0.0047 1.6E-07 49.6 3.1 22 7-28 170-191 (377)
425 3b60_A Lipid A export ATP-bind 95.9 0.0046 1.6E-07 52.5 3.2 23 8-30 371-393 (582)
426 1ltq_A Polynucleotide kinase; 95.8 0.0062 2.1E-07 47.0 3.6 22 7-28 3-24 (301)
427 2dpy_A FLII, flagellum-specifi 95.8 0.0053 1.8E-07 50.3 3.3 23 8-30 159-181 (438)
428 3b5x_A Lipid A export ATP-bind 95.8 0.0053 1.8E-07 52.1 3.3 23 8-30 371-393 (582)
429 3gmt_A Adenylate kinase; ssgci 95.8 0.0066 2.2E-07 45.2 3.3 25 4-28 6-30 (230)
430 3bk7_A ABC transporter ATP-bin 95.8 0.0056 1.9E-07 52.2 3.3 23 8-30 119-141 (607)
431 1njg_A DNA polymerase III subu 95.7 0.0062 2.1E-07 44.7 3.1 22 8-29 47-68 (250)
432 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.0059 2E-07 48.7 3.2 19 9-27 26-44 (365)
433 3n70_A Transport activator; si 95.7 0.0065 2.2E-07 41.6 3.0 24 7-30 25-48 (145)
434 1yqt_A RNAse L inhibitor; ATP- 95.7 0.0064 2.2E-07 51.1 3.5 24 8-31 314-337 (538)
435 3b9p_A CG5977-PA, isoform A; A 95.7 0.006 2E-07 46.9 3.1 24 6-29 54-77 (297)
436 1tue_A Replication protein E1; 95.7 0.0052 1.8E-07 44.9 2.5 22 8-29 60-81 (212)
437 3t15_A Ribulose bisphosphate c 95.7 0.0071 2.4E-07 46.7 3.4 24 6-29 36-59 (293)
438 2chg_A Replication factor C sm 95.7 0.0067 2.3E-07 44.0 3.1 22 8-29 40-61 (226)
439 3h4m_A Proteasome-activating n 95.7 0.0069 2.4E-07 46.3 3.3 24 6-29 51-74 (285)
440 3ozx_A RNAse L inhibitor; ATP 95.7 0.0057 1.9E-07 51.4 3.0 24 8-31 296-319 (538)
441 3bk7_A ABC transporter ATP-bin 95.7 0.0068 2.3E-07 51.7 3.5 24 8-31 384-407 (607)
442 1a7j_A Phosphoribulokinase; tr 95.7 0.0033 1.1E-07 48.6 1.4 27 1-28 1-27 (290)
443 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.008 2.7E-07 45.2 3.6 24 6-29 39-62 (262)
444 1nlf_A Regulatory protein REPA 95.7 0.0065 2.2E-07 46.5 3.1 21 8-28 32-52 (279)
445 3cf0_A Transitional endoplasmi 95.6 0.0067 2.3E-07 47.0 3.1 23 7-29 50-72 (301)
446 3ake_A Cytidylate kinase; CMP 95.6 0.01 3.4E-07 42.9 3.8 21 8-28 4-24 (208)
447 1q3t_A Cytidylate kinase; nucl 95.5 0.0092 3.1E-07 44.4 3.4 23 6-28 16-38 (236)
448 2yl4_A ATP-binding cassette SU 95.5 0.0048 1.7E-07 52.5 2.0 22 8-29 372-393 (595)
449 3j16_B RLI1P; ribosome recycli 95.5 0.0078 2.7E-07 51.3 3.2 23 9-31 381-403 (608)
450 2qmh_A HPR kinase/phosphorylas 95.5 0.0083 2.8E-07 43.6 2.9 24 7-30 35-58 (205)
451 3qf4_B Uncharacterized ABC tra 95.5 0.0054 1.8E-07 52.3 2.2 23 8-30 383-405 (598)
452 1l8q_A Chromosomal replication 95.5 0.0081 2.8E-07 46.9 3.1 23 7-29 38-60 (324)
453 3pfi_A Holliday junction ATP-d 95.5 0.037 1.3E-06 43.3 6.9 23 7-29 56-78 (338)
454 3zvl_A Bifunctional polynucleo 95.5 0.0081 2.8E-07 48.8 3.1 23 7-29 259-281 (416)
455 2px0_A Flagellar biosynthesis 95.5 0.0085 2.9E-07 46.4 3.1 85 55-149 183-273 (296)
456 4a82_A Cystic fibrosis transme 95.4 0.0046 1.6E-07 52.5 1.6 22 8-29 369-390 (578)
457 4b4t_K 26S protease regulatory 95.4 0.0091 3.1E-07 48.7 3.2 25 5-29 205-229 (428)
458 3syl_A Protein CBBX; photosynt 95.4 0.0099 3.4E-07 45.9 3.3 22 7-28 68-89 (309)
459 4b4t_M 26S protease regulatory 95.4 0.0093 3.2E-07 48.7 3.1 25 5-29 214-238 (434)
460 1d2n_A N-ethylmaleimide-sensit 95.4 0.013 4.6E-07 44.4 3.9 25 5-29 63-87 (272)
461 1sxj_E Activator 1 40 kDa subu 95.4 0.0078 2.7E-07 47.4 2.6 22 8-29 38-59 (354)
462 3qf4_A ABC transporter, ATP-bi 95.3 0.0062 2.1E-07 51.8 2.1 22 8-29 371-392 (587)
463 3qks_A DNA double-strand break 95.3 0.011 3.7E-07 43.1 3.2 19 9-27 26-44 (203)
464 2dr3_A UPF0273 protein PH0284; 95.3 0.01 3.5E-07 44.1 3.1 21 8-28 25-45 (247)
465 2qby_A CDC6 homolog 1, cell di 95.3 0.0096 3.3E-07 47.2 3.1 23 7-29 46-68 (386)
466 1vma_A Cell division protein F 95.3 0.011 3.6E-07 46.1 3.2 86 55-150 187-284 (306)
467 1sxj_C Activator 1 40 kDa subu 95.3 0.01 3.5E-07 46.7 3.1 23 8-30 48-70 (340)
468 3crm_A TRNA delta(2)-isopenten 95.3 0.012 4.2E-07 46.1 3.4 23 7-29 6-28 (323)
469 1pzn_A RAD51, DNA repair and r 95.3 0.01 3.6E-07 47.0 3.1 23 8-30 133-155 (349)
470 1ofh_A ATP-dependent HSL prote 95.3 0.011 3.9E-07 45.4 3.2 23 7-29 51-73 (310)
471 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.011 3.7E-07 46.3 3.1 23 7-29 46-68 (322)
472 4fcw_A Chaperone protein CLPB; 95.2 0.011 3.9E-07 45.5 3.1 23 7-29 48-70 (311)
473 4b4t_L 26S protease subunit RP 95.2 0.011 3.8E-07 48.3 3.1 25 5-29 214-238 (437)
474 1qhl_A Protein (cell division 95.2 0.0015 5.3E-08 48.6 -1.8 23 9-31 30-52 (227)
475 2ga8_A Hypothetical 39.9 kDa p 95.2 0.014 5E-07 46.2 3.6 23 6-28 24-46 (359)
476 1fnn_A CDC6P, cell division co 95.2 0.013 4.4E-07 46.6 3.4 23 8-30 46-68 (389)
477 3d3q_A TRNA delta(2)-isopenten 95.2 0.012 4.1E-07 46.4 3.1 23 7-29 8-30 (340)
478 3eie_A Vacuolar protein sortin 95.2 0.013 4.4E-07 45.8 3.3 24 6-29 51-74 (322)
479 4b4t_J 26S protease regulatory 95.2 0.012 4.2E-07 47.5 3.1 25 5-29 181-205 (405)
480 3ld9_A DTMP kinase, thymidylat 95.1 0.017 5.9E-07 42.7 3.7 25 4-28 19-43 (223)
481 3a8t_A Adenylate isopentenyltr 95.1 0.014 4.7E-07 46.0 3.3 22 8-29 42-63 (339)
482 3ea0_A ATPase, para family; al 95.1 0.19 6.5E-06 37.1 9.6 91 54-152 118-208 (245)
483 3cwq_A Para family chromosome 95.1 0.12 4.1E-06 37.6 8.2 86 54-146 67-153 (209)
484 3exa_A TRNA delta(2)-isopenten 95.1 0.014 4.8E-07 45.5 3.3 23 7-29 4-26 (322)
485 4f4c_A Multidrug resistance pr 95.1 0.014 4.6E-07 54.3 3.7 22 8-29 1107-1128(1321)
486 2iw3_A Elongation factor 3A; a 95.1 0.015 5.2E-07 52.1 3.7 24 8-31 463-486 (986)
487 1p5z_B DCK, deoxycytidine kina 95.0 0.01 3.4E-07 45.0 2.1 25 5-29 23-47 (263)
488 1sxj_D Activator 1 41 kDa subu 95.0 0.015 5E-07 45.7 3.1 22 8-29 60-81 (353)
489 3tqf_A HPR(Ser) kinase; transf 94.9 0.02 6.8E-07 40.6 3.4 24 7-30 17-40 (181)
490 2r62_A Cell division protease 94.9 0.0067 2.3E-07 45.9 1.1 23 7-29 45-67 (268)
491 1c9k_A COBU, adenosylcobinamid 94.9 0.017 5.8E-07 41.3 3.1 21 9-29 2-22 (180)
492 2v1u_A Cell division control p 94.9 0.013 4.6E-07 46.4 2.8 24 6-29 44-67 (387)
493 3cr8_A Sulfate adenylyltranfer 94.9 0.0096 3.3E-07 50.2 2.0 24 6-29 369-392 (552)
494 2iw3_A Elongation factor 3A; a 94.9 0.0081 2.8E-07 53.8 1.6 23 8-30 701-723 (986)
495 4b4t_I 26S protease regulatory 94.9 0.016 5.5E-07 47.1 3.2 25 5-29 215-239 (437)
496 3uk6_A RUVB-like 2; hexameric 94.9 0.015 5.2E-07 46.0 3.1 22 8-29 72-93 (368)
497 2ocp_A DGK, deoxyguanosine kin 94.9 0.021 7.1E-07 42.6 3.6 23 7-29 3-25 (241)
498 3m6a_A ATP-dependent protease 94.8 0.015 5.3E-07 48.9 3.1 22 8-29 110-131 (543)
499 1tf7_A KAIC; homohexamer, hexa 94.8 0.015 5.3E-07 48.6 3.1 20 9-28 42-63 (525)
500 2qp9_X Vacuolar protein sortin 94.8 0.017 5.7E-07 45.9 3.1 23 7-29 85-107 (355)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.6e-42 Score=260.55 Aligned_cols=168 Identities=41% Similarity=0.702 Sum_probs=146.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
+.+||+|+|++|+|||||+++|..+.|...+.+|.+.++....+.+++..+.+.||||+|++.|..++..+++.+|++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 45899999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
|||++++.+++++..|+..+......++|+++|+||+|+.+.+.++.+++++++..++++|+++||++|.||+++|+.|+
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~ 171 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHH
Confidence 99999999999999999999888778899999999999998889999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 028303 165 AKILQNIQ 172 (210)
Q Consensus 165 ~~~~~~~~ 172 (210)
+.+.....
T Consensus 172 ~~i~~~~~ 179 (216)
T 4dkx_A 172 AALPGMES 179 (216)
T ss_dssp HHC-----
T ss_pred HHHHhhhc
Confidence 88765443
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=3.7e-37 Score=229.73 Aligned_cols=174 Identities=48% Similarity=0.876 Sum_probs=159.7
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 57789999999999999999999999999888888888888888888999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888776668999999999999887778888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccc
Q 028303 163 TAAKILQNIQEGAL 176 (210)
Q Consensus 163 l~~~~~~~~~~~~~ 176 (210)
|.+.+.........
T Consensus 165 l~~~i~~~~~~~~~ 178 (206)
T 2bcg_Y 165 MARQIKESMSQQNL 178 (206)
T ss_dssp HHHHHHHHCCHHHH
T ss_pred HHHHHHHHHhhccc
Confidence 99999877665543
No 3
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-37 Score=233.99 Aligned_cols=178 Identities=49% Similarity=0.841 Sum_probs=148.1
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (210)
|.+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 8 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (223)
T 3cpj_B 8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV 87 (223)
T ss_dssp --CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred CCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence 34567899999999999999999999999998888888888888888889998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 160 (210)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus 88 ~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 167 (223)
T 3cpj_B 88 GALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAF 167 (223)
T ss_dssp EEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887766689999999999998777788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccc
Q 028303 161 IKTAAKILQNIQEGALDA 178 (210)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~ 178 (210)
++|.+.+.....+...+.
T Consensus 168 ~~l~~~i~~~~~~~~~~~ 185 (223)
T 3cpj_B 168 EELINTIYQKVSKHQMDL 185 (223)
T ss_dssp HHHHHHHTTCC-------
T ss_pred HHHHHHHHHHhhhcccCc
Confidence 999999988777666554
No 4
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.9e-35 Score=220.34 Aligned_cols=197 Identities=36% Similarity=0.613 Sum_probs=154.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 56799999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCeEEEEecCCCCCHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQNVEE 158 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~ 158 (210)
+|||++++.++..+..|+..+..... .+.|+++|+||+|+. ......+++..++. ..+++++++||+++.|+++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999888766543 478999999999997 44566788888887 6678999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCcccccCCCCCCCCCCCCCcccCCCccC
Q 028303 159 AFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPSGARDGTVSQRGGCCS 210 (210)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 210 (210)
+|++|.+.+.....+.......+..+.+. .....++++++|||
T Consensus 165 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~c~c 207 (207)
T 1vg8_A 165 AFQTIARNALKQETEVELYNEFPEPIKLD---------KNERAKASAESCSC 207 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCC--------------------------
T ss_pred HHHHHHHHHHHhccccccccCCCccccCC---------cccccccCCCCCCC
Confidence 99999999988776554333333333322 01112366788976
No 5
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.7e-34 Score=210.56 Aligned_cols=177 Identities=59% Similarity=0.990 Sum_probs=159.6
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 35679999999999999999999999999888888888888888888999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+...++..++...+++++++||+++.|++++|++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999998887776678999999999999776778888899999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccc
Q 028303 163 TAAKILQNIQEGALDAV 179 (210)
Q Consensus 163 l~~~~~~~~~~~~~~~~ 179 (210)
|.+.+.+...+......
T Consensus 167 l~~~~~~~~~~~~~~~~ 183 (186)
T 2bme_A 167 CARKILNKIESGELDPE 183 (186)
T ss_dssp HHHHHHHHHHSCC----
T ss_pred HHHHHHHHhhhcCCCcc
Confidence 99999988777655443
No 6
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-34 Score=214.43 Aligned_cols=172 Identities=47% Similarity=0.847 Sum_probs=157.0
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
+++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 46789999999999999999999999999888888888888888888999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 182 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD 182 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888776668999999999999877778888899999989999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 028303 163 TAAKILQNIQEG 174 (210)
Q Consensus 163 l~~~~~~~~~~~ 174 (210)
|.+.+.....+.
T Consensus 183 l~~~i~~~~~~~ 194 (201)
T 2ew1_A 183 LACRLISEARQN 194 (201)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHhhc
Confidence 999988765443
No 7
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=213.77 Aligned_cols=169 Identities=35% Similarity=0.534 Sum_probs=150.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 3568999999999999999999999998887777766555 345678888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 170 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 170 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999988877653 57999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 028303 163 TAAKILQNIQE 173 (210)
Q Consensus 163 l~~~~~~~~~~ 173 (210)
|.+.+.....+
T Consensus 171 l~~~i~~~~~~ 181 (206)
T 2bov_A 171 LMREIRARKME 181 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHcccc
Confidence 99998876543
No 8
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=5.2e-34 Score=212.12 Aligned_cols=174 Identities=41% Similarity=0.781 Sum_probs=160.1
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (210)
+++++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 45678899999999999999999999999988888888888888888888999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 160 (210)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999998877665689999999999998877788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 028303 161 IKTAAKILQNIQEG 174 (210)
Q Consensus 161 ~~l~~~~~~~~~~~ 174 (210)
++|.+.+.+..++.
T Consensus 163 ~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 163 ERLVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998887664
No 9
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=6.2e-34 Score=210.33 Aligned_cols=171 Identities=51% Similarity=0.918 Sum_probs=158.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 56799999999999999999999999998888889899999888999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 173 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988777789999999999998888888899999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 028303 164 AAKILQNIQEG 174 (210)
Q Consensus 164 ~~~~~~~~~~~ 174 (210)
.+.+.......
T Consensus 174 ~~~i~~~~~~~ 184 (196)
T 3tkl_A 174 AAEIKKRMGPG 184 (196)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHhccc
Confidence 99998876654
No 10
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=215.05 Aligned_cols=178 Identities=59% Similarity=0.982 Sum_probs=150.4
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (210)
|.+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 35678899999999999999999999999888888888888888888888998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 160 (210)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+...++..++...+++++++||+++.|++++|
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 179 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998887766789999999999998777788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccc
Q 028303 161 IKTAAKILQNIQEGALDA 178 (210)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~ 178 (210)
++|.+.+.....+.....
T Consensus 180 ~~l~~~i~~~~~~~~~~~ 197 (200)
T 2o52_A 180 LKCARTILNKIDSGELDP 197 (200)
T ss_dssp HHHHHHHHHHHHTTSSCG
T ss_pred HHHHHHHHHHHhcCCCCc
Confidence 999999998877665443
No 11
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=5.9e-35 Score=213.68 Aligned_cols=172 Identities=48% Similarity=0.932 Sum_probs=128.8
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 56789999999999999999999999888777778888888888888899899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888776668999999999999877778889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 028303 163 TAAKILQNIQEG 174 (210)
Q Consensus 163 l~~~~~~~~~~~ 174 (210)
|.+.+.....+.
T Consensus 165 l~~~i~~~~~~~ 176 (183)
T 2fu5_C 165 LARDIKAKMDKN 176 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999998876654
No 12
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=214.00 Aligned_cols=171 Identities=44% Similarity=0.818 Sum_probs=147.4
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
.+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 45678999999999999999999999999888888888888888888889988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAF 160 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~ 160 (210)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...++ +++++||+++.|++++|
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 184 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998877667899999999999987777888899999999999 99999999999999999
Q ss_pred HHHHHHHHHHHh
Q 028303 161 IKTAAKILQNIQ 172 (210)
Q Consensus 161 ~~l~~~~~~~~~ 172 (210)
++|.+.+.....
T Consensus 185 ~~l~~~i~~~~~ 196 (201)
T 2hup_A 185 LRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcc
Confidence 999998876543
No 13
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.7e-34 Score=209.33 Aligned_cols=172 Identities=47% Similarity=0.818 Sum_probs=157.3
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
.+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 45678999999999999999999999999988888888888888888889999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||+++.|++++|+
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE 180 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999988776666899999999999987677788889999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 028303 162 KTAAKILQNIQE 173 (210)
Q Consensus 162 ~l~~~~~~~~~~ 173 (210)
+|.+.+.++..+
T Consensus 181 ~l~~~i~~~~~~ 192 (193)
T 2oil_A 181 TVLKEIFAKVSK 192 (193)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhc
Confidence 999998876543
No 14
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=5.7e-34 Score=210.13 Aligned_cols=171 Identities=81% Similarity=1.255 Sum_probs=152.9
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
..+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 45789999999999999999999999998888888888888888888999899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN 177 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776678999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 028303 163 TAAKILQNIQE 173 (210)
Q Consensus 163 l~~~~~~~~~~ 173 (210)
|.+.+.++..+
T Consensus 178 l~~~i~~~~~~ 188 (191)
T 2a5j_A 178 TAKEIYRKIQQ 188 (191)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999877654
No 15
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=7.9e-34 Score=208.98 Aligned_cols=170 Identities=41% Similarity=0.785 Sum_probs=155.8
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 34678999999999999999999999999888888888888888888889889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...+++++++||+++.|++++|+
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE 177 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999988877656899999999999987777788889999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 028303 162 KTAAKILQNI 171 (210)
Q Consensus 162 ~l~~~~~~~~ 171 (210)
+|.+.+.++.
T Consensus 178 ~l~~~i~~~~ 187 (189)
T 2gf9_A 178 RLVDVICEKM 187 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887664
No 16
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=7.3e-34 Score=206.72 Aligned_cols=168 Identities=68% Similarity=1.111 Sum_probs=153.9
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 34678999999999999999999999999888888888888888888889989999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
+|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...+++++++||+++.|++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999988887767899999999999987777888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028303 162 KTAAKILQ 169 (210)
Q Consensus 162 ~l~~~~~~ 169 (210)
+|.+.+.+
T Consensus 171 ~l~~~i~~ 178 (179)
T 1z0f_A 171 EAAKKIYQ 178 (179)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99987753
No 17
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=3.3e-34 Score=215.38 Aligned_cols=177 Identities=37% Similarity=0.714 Sum_probs=154.1
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCE----------EEEEEEEecCCcchhhh
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR----------PIKLQIWDTAGQESFRS 70 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~ 70 (210)
+.+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++. .+.+.+|||||++.+..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 35678899999999999999999999999887777777777777777777665 78899999999999999
Q ss_pred hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEe
Q 028303 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS 149 (210)
Q Consensus 71 ~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (210)
.+..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++|
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 179 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS 179 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEB
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 999999999999999999999999999998887765443 5799999999999987777888899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 028303 150 ARTAQNVEEAFIKTAAKILQNIQEGALD 177 (210)
Q Consensus 150 a~~~~~i~~~~~~l~~~~~~~~~~~~~~ 177 (210)
|+++.|++++|++|.+.+.++..+....
T Consensus 180 a~~g~gi~~l~~~l~~~i~~~~~~~~~~ 207 (217)
T 2f7s_A 180 AATGQNVEKAVETLLDLIMKRMEQCVEK 207 (217)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCCCc
Confidence 9999999999999999998877665433
No 18
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=204.70 Aligned_cols=172 Identities=46% Similarity=0.779 Sum_probs=155.3
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
+++.++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999998888888889999888899999989999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNC 164 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999998887654 47899999999999887788888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q 028303 163 TAAKILQNIQEGA 175 (210)
Q Consensus 163 l~~~~~~~~~~~~ 175 (210)
|.+.+.....+..
T Consensus 165 l~~~~~~~~~~~~ 177 (181)
T 3tw8_B 165 ITELVLRAKKDNL 177 (181)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhh
Confidence 9999888766543
No 19
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.2e-33 Score=204.74 Aligned_cols=167 Identities=40% Similarity=0.759 Sum_probs=152.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
.+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 46799999999999999999999999988888888888888888888998999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..++++.++...+++++++||+++.|++++|++|
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 169 (181)
T 2efe_B 90 IVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI 169 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999888766789999999999998777788889999999999999999999999999999999
Q ss_pred HHHHHHH
Q 028303 164 AAKILQN 170 (210)
Q Consensus 164 ~~~~~~~ 170 (210)
.+.+...
T Consensus 170 ~~~~~~~ 176 (181)
T 2efe_B 170 ARRLPRV 176 (181)
T ss_dssp HHTCC--
T ss_pred HHHHHhc
Confidence 8877554
No 20
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=9.5e-34 Score=206.92 Aligned_cols=170 Identities=32% Similarity=0.455 Sum_probs=152.1
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (210)
|.....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 79 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDIN 79 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCS
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCC
Confidence 6777889999999999999999999999988888888877777 666788999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 028303 81 GALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159 (210)
Q Consensus 81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 159 (210)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 159 (181)
T 3t5g_A 80 GYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 159 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Confidence 99999999999999999999988866543 57999999999999888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 160 FIKTAAKILQNI 171 (210)
Q Consensus 160 ~~~l~~~~~~~~ 171 (210)
|+.|.+.+....
T Consensus 160 ~~~l~~~~~~~~ 171 (181)
T 3t5g_A 160 FRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999887654
No 21
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-34 Score=214.01 Aligned_cols=170 Identities=41% Similarity=0.792 Sum_probs=156.4
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
+++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 46789999999999999999999999998888888888888888888888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 179 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFER 179 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999887888889999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 028303 163 TAAKILQNIQ 172 (210)
Q Consensus 163 l~~~~~~~~~ 172 (210)
|.+.+.+..+
T Consensus 180 l~~~i~~~~~ 189 (191)
T 3dz8_A 180 LVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhcc
Confidence 9999887654
No 22
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=9.2e-34 Score=204.69 Aligned_cols=167 Identities=35% Similarity=0.706 Sum_probs=145.1
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
.+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 35678999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
+++|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999999999888776556799999999999987777888899999999999999999999999999999
Q ss_pred HHHHHHH
Q 028303 162 KTAAKIL 168 (210)
Q Consensus 162 ~l~~~~~ 168 (210)
+|.+.+.
T Consensus 162 ~l~~~~~ 168 (170)
T 1z08_A 162 DLCKRMI 168 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998775
No 23
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=2.7e-33 Score=201.94 Aligned_cols=164 Identities=43% Similarity=0.796 Sum_probs=151.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
.+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999999988888888888888888888998999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999998887766789999999999997767778888999999999999999999999999999999
Q ss_pred HHHH
Q 028303 164 AAKI 167 (210)
Q Consensus 164 ~~~~ 167 (210)
.+.+
T Consensus 164 ~~~~ 167 (170)
T 1r2q_A 164 AKKL 167 (170)
T ss_dssp HHTS
T ss_pred HHHH
Confidence 8754
No 24
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=5.1e-33 Score=206.33 Aligned_cols=169 Identities=36% Similarity=0.647 Sum_probs=151.4
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEE--------------------------
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP-------------------------- 54 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 54 (210)
|..++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 788889999999999999999999999999888888888888887777777655
Q ss_pred -----------EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCC
Q 028303 55 -----------IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123 (210)
Q Consensus 55 -----------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 123 (210)
+.+.+|||||++.+...+..+++.+|++++|+|++++.++..+..|+..+.... +.|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-
Confidence 889999999999999999999999999999999999999999999998887765 489999999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028303 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172 (210)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 172 (210)
........+++.+++...+++++++||+++.|++++|++|.+.+.++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 207 (208)
T 3clv_A 159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207 (208)
T ss_dssp CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 5556778899999999999999999999999999999999999887654
No 25
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=5.6e-33 Score=200.45 Aligned_cols=165 Identities=40% Similarity=0.739 Sum_probs=152.5
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 56789999999999999999999999998888888888888888888999899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
++|||++++.++..+..|+..+........|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999988876678999999999999877778888899999999999999999999999999999
Q ss_pred HHHHH
Q 028303 163 TAAKI 167 (210)
Q Consensus 163 l~~~~ 167 (210)
|.+.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98765
No 26
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4e-33 Score=203.20 Aligned_cols=169 Identities=45% Similarity=0.844 Sum_probs=144.9
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (210)
.++..++|+|+|++|+|||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 4567899999999999999999999999885 356777788888877788999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 160 (210)
++|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998887766789999999999998877788888999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 028303 161 IKTAAKILQN 170 (210)
Q Consensus 161 ~~l~~~~~~~ 170 (210)
++|.+.+.+.
T Consensus 166 ~~l~~~~~~~ 175 (180)
T 2g6b_A 166 TAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 9999887644
No 27
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-33 Score=208.10 Aligned_cols=167 Identities=37% Similarity=0.665 Sum_probs=152.3
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
+++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 46789999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...+++++++||+++.|++++|++
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 179 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQG 179 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999988776668999999999999776777888999999999999999999999999999999
Q ss_pred HHHHHHH
Q 028303 163 TAAKILQ 169 (210)
Q Consensus 163 l~~~~~~ 169 (210)
|.+.+.+
T Consensus 180 l~~~i~~ 186 (192)
T 2fg5_A 180 ISRQIPP 186 (192)
T ss_dssp HHHTCC-
T ss_pred HHHHHHh
Confidence 9887654
No 28
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.6e-33 Score=203.28 Aligned_cols=166 Identities=48% Similarity=0.895 Sum_probs=144.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 35799999999999999999999999988888888888888887888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
+|+|++++.++..+..|+..+......+.|+++|+||+|+ ..+....+++..++...+++++++||+++.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999888876678999999999999 445567788889999999999999999999999999999
Q ss_pred HHHHHHH
Q 028303 164 AAKILQN 170 (210)
Q Consensus 164 ~~~~~~~ 170 (210)
.+.+.++
T Consensus 160 ~~~~~~~ 166 (170)
T 1g16_A 160 AKLIQEK 166 (170)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9988654
No 29
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=207.10 Aligned_cols=168 Identities=45% Similarity=0.802 Sum_probs=146.1
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999988888888888888888888999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~ 161 (210)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++++.++... +++++++||+++.|++++|+
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 182 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL 182 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999998888776668999999999999877778888888888874 78999999999999999999
Q ss_pred HHHHHHHHH
Q 028303 162 KTAAKILQN 170 (210)
Q Consensus 162 ~l~~~~~~~ 170 (210)
+|.+.+.++
T Consensus 183 ~l~~~i~~~ 191 (192)
T 2il1_A 183 KLVDDILKK 191 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988653
No 30
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2.5e-33 Score=201.91 Aligned_cols=166 Identities=37% Similarity=0.610 Sum_probs=150.6
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 45689999999999999999999999998888888888888888888899889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 99999999999999999988887655 57899999999999876777888899999999999999999999999999999
Q ss_pred HHHHHHH
Q 028303 163 TAAKILQ 169 (210)
Q Consensus 163 l~~~~~~ 169 (210)
|.+.+.+
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988753
No 31
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=9.2e-33 Score=202.01 Aligned_cols=165 Identities=33% Similarity=0.540 Sum_probs=150.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
.+.+||+|+|++|+|||||+++|.+..+...+.++.+..+ .....+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999988888888877776 666788999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecC-CCCCHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR-TAQNVEEAFI 161 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~-~~~~i~~~~~ 161 (210)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||+ ++.|++++|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~ 174 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHH
Confidence 9999999999999999988886643 3678999999999998888889999999999999999999999 9999999999
Q ss_pred HHHHHHHH
Q 028303 162 KTAAKILQ 169 (210)
Q Consensus 162 ~l~~~~~~ 169 (210)
.|.+.+.+
T Consensus 175 ~l~~~i~~ 182 (183)
T 3kkq_A 175 DLVRVIRQ 182 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99988764
No 32
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=6e-33 Score=200.15 Aligned_cols=163 Identities=42% Similarity=0.761 Sum_probs=149.1
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999999888888888888888888899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC---CCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR---RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
|+|++++.++..+..|+..+......+.|+++|+||+|+.+. ..+..+++..++...+++++++||+++.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999888776678999999999999654 56777888899999999999999999999999999
Q ss_pred HHHHHH
Q 028303 162 KTAAKI 167 (210)
Q Consensus 162 ~l~~~~ 167 (210)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 988654
No 33
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=9.5e-33 Score=203.33 Aligned_cols=172 Identities=38% Similarity=0.723 Sum_probs=153.5
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEE-EEEEEECCE---------EEEEEEEecCCcchhhhhh
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG-ARMVTIDGR---------PIKLQIWDTAGQESFRSIT 72 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~~~ 72 (210)
+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++. ...+.+++. .+.+.+|||||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 467899999999999999999999999988888888888777 555666655 7899999999999999999
Q ss_pred HHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecC
Q 028303 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR 151 (210)
Q Consensus 73 ~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 151 (210)
..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+..+++.+++...+++++++||+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 167 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA 167 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence 9999999999999999999999999999988877654 679999999999998777778888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Q 028303 152 TAQNVEEAFIKTAAKILQNIQEG 174 (210)
Q Consensus 152 ~~~~i~~~~~~l~~~~~~~~~~~ 174 (210)
++.|++++|++|.+.+.++..+.
T Consensus 168 ~~~~v~~l~~~l~~~~~~~~~~~ 190 (195)
T 3bc1_A 168 NGTNISHAIEMLLDLIMKRMERS 190 (195)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999998776553
No 34
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-32 Score=205.89 Aligned_cols=171 Identities=47% Similarity=0.891 Sum_probs=152.6
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 35679999999999999999999999998888888888888888888999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
|+|||++++.++..+..|+..+......+.|+++|+||+|+ .......+++..++...+++++++||+++.|++++|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998888776667999999999999 44556778888899988999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 028303 163 TAAKILQNIQEG 174 (210)
Q Consensus 163 l~~~~~~~~~~~ 174 (210)
|.+.+.....+.
T Consensus 176 l~~~~~~~~~~~ 187 (213)
T 3cph_A 176 LAKLIQEKIDSN 187 (213)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhh
Confidence 999888776443
No 35
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=207.62 Aligned_cols=166 Identities=38% Similarity=0.683 Sum_probs=138.8
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 45679999999999999999999999998888888888888888888999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC------CCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA------HRRAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 156 (210)
|+|||++++.++..+..|+..+......+.|+++|+||+|+. ..+.+..+++..++...+++++++||+++.|+
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv 184 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence 999999999999999999988877665679999999999995 34567788889999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 157 EEAFIKTAAKIL 168 (210)
Q Consensus 157 ~~~~~~l~~~~~ 168 (210)
+++|++|.+.+.
T Consensus 185 ~el~~~l~~~i~ 196 (199)
T 2p5s_A 185 VEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999998775
No 36
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=208.93 Aligned_cols=173 Identities=30% Similarity=0.456 Sum_probs=145.0
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (210)
|.....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 4556789999999999999999999999999888888877666 555666777889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 028303 81 GALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159 (210)
Q Consensus 81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 159 (210)
++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999988876533 57899999999999887888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 028303 160 FIKTAAKILQNIQEG 174 (210)
Q Consensus 160 ~~~l~~~~~~~~~~~ 174 (210)
|+.|.+.+.......
T Consensus 178 ~~~l~~~i~~~~~~~ 192 (201)
T 3oes_A 178 FTKVIQEIARVENSY 192 (201)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999887665443
No 37
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=2.3e-32 Score=199.16 Aligned_cols=168 Identities=33% Similarity=0.570 Sum_probs=150.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 45699999999999999999999999888888888777665 55778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 165 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ 165 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 999999999999999998888544 3467999999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 028303 163 TAAKILQNIQ 172 (210)
Q Consensus 163 l~~~~~~~~~ 172 (210)
|.+.+.....
T Consensus 166 l~~~~~~~~~ 175 (181)
T 2fn4_A 166 LVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhhc
Confidence 9998876554
No 38
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=1e-32 Score=200.69 Aligned_cols=164 Identities=41% Similarity=0.734 Sum_probs=150.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999999999888888888888888888899988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
|+|++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|.
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999888776666899999999999987777888889999999999999999999999999999998
Q ss_pred HHHH
Q 028303 165 AKIL 168 (210)
Q Consensus 165 ~~~~ 168 (210)
+.+.
T Consensus 173 ~~~~ 176 (179)
T 2y8e_A 173 AALP 176 (179)
T ss_dssp HTCC
T ss_pred HHHh
Confidence 7653
No 39
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=198.82 Aligned_cols=168 Identities=32% Similarity=0.444 Sum_probs=136.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch--hhhhhHHhhccccE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--FRSITRSYYRGAAG 81 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~ 81 (210)
++.++|+|+|++|+|||||+++|.+..+...+. +.+.+.....+.+++..+.+.+|||||++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 457999999999999999999999988765544 346666667778899889999999999987 56677888999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 160 (210)
+++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999988887653 2578999999999998877788888889998899999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 028303 161 IKTAAKILQNIQ 172 (210)
Q Consensus 161 ~~l~~~~~~~~~ 172 (210)
++|.+.+..+..
T Consensus 161 ~~l~~~~~~~~~ 172 (175)
T 2nzj_A 161 EGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhc
Confidence 999998876544
No 40
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.6e-32 Score=198.72 Aligned_cols=167 Identities=19% Similarity=0.305 Sum_probs=141.5
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (210)
|...+.+||+|+|++|+|||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+|||||++. ..+++.+|
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d 74 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD 74 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence 666778999999999999999999999998876 566666444 55677888899999999999876 46778899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEecCCCC--CCCCCCHHHHHHHHHHc-CCeEEEEecCCCC
Q 028303 81 GALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLA--HRRAVSKEEGEQFAKEN-GLLFLEASARTAQ 154 (210)
Q Consensus 81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~ 154 (210)
++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+. ..+.+..+++.+++... +++++++||+++.
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL 154 (178)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence 99999999999999999997766654432 578999999999994 45667888899988876 6899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhc
Q 028303 155 NVEEAFIKTAAKILQNIQEG 174 (210)
Q Consensus 155 ~i~~~~~~l~~~~~~~~~~~ 174 (210)
|++++|+.|.+.+.....+.
T Consensus 155 ~i~~lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 155 NVDRVFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhh
Confidence 99999999999998776554
No 41
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=3.6e-32 Score=197.66 Aligned_cols=166 Identities=37% Similarity=0.678 Sum_probs=146.1
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 35679999999999999999999999998888888888888888888999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCeEEEEecCCCCCHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQNVE 157 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~ 157 (210)
++|||++++.++..+..|+..+..... .+.|+++|+||+|+. ......+++.+++. ..+++++++||+++.|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 162 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999988876543 578999999999997 45667788888888 567899999999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 158 EAFIKTAAKILQ 169 (210)
Q Consensus 158 ~~~~~l~~~~~~ 169 (210)
++|++|.+.+..
T Consensus 163 ~l~~~l~~~~~~ 174 (177)
T 1wms_A 163 AAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 42
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=5.6e-32 Score=198.51 Aligned_cols=168 Identities=33% Similarity=0.579 Sum_probs=145.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+|+|++|+|||||+++|.+..+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 569999999999999999999999998777777754 4444557788999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....+++..++...+++++++||+++.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988877543 5799999999999974 4567788899999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 028303 164 AAKILQNIQEG 174 (210)
Q Consensus 164 ~~~~~~~~~~~ 174 (210)
.+.+.....+.
T Consensus 161 ~~~~~~~~~~~ 171 (189)
T 4dsu_A 161 VREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhc
Confidence 99988776554
No 43
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.6e-33 Score=210.93 Aligned_cols=169 Identities=33% Similarity=0.619 Sum_probs=143.8
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (210)
|...+.++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 82 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGAD 82 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCS
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCC
Confidence 6666789999999999999999999999988877777776555 344667888889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCCC--------CCHHHHHHHHHHcCC-eEEEEec
Q 028303 81 GALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRA--------VSKEEGEQFAKENGL-LFLEASA 150 (210)
Q Consensus 81 ~~i~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~sa 150 (210)
++|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+... +..+++..++...++ +++++||
T Consensus 83 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (212)
T 2j0v_A 83 IFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS 161 (212)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence 999999999999999987 7888877654 4789999999999865432 367888889988886 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 028303 151 RTAQNVEEAFIKTAAKILQNI 171 (210)
Q Consensus 151 ~~~~~i~~~~~~l~~~~~~~~ 171 (210)
+++.|++++|++|++.+....
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 162 KTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp TTCTTHHHHHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHhhhh
Confidence 999999999999999887543
No 44
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.9e-32 Score=201.59 Aligned_cols=165 Identities=42% Similarity=0.787 Sum_probs=147.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh-hhhHHhhccccEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-SITRSYYRGAAGA 82 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~ 82 (210)
...+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+. .++..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 456999999999999999999999999888888888888888888899988999999999999988 8899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCC---CCHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA---QNVEE 158 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~---~~i~~ 158 (210)
|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++ .++.+
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence 99999999999999999998887765 467999999999999877778888899999999999999999999 99999
Q ss_pred HHHHHHHHHH
Q 028303 159 AFIKTAAKIL 168 (210)
Q Consensus 159 ~~~~l~~~~~ 168 (210)
+|++|.+.+.
T Consensus 178 l~~~l~~~i~ 187 (189)
T 1z06_A 178 IFMTLAHKLK 187 (189)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 45
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.5e-32 Score=198.21 Aligned_cols=164 Identities=27% Similarity=0.406 Sum_probs=133.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh-hhHHhhccccEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-ITRSYYRGAAGALL 84 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~ 84 (210)
.+||+|+|++|+|||||+++|.+.........+.+.+.....+.+++..+.+.+||+||++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998877766666667777777788999999999999999998876 77788899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999998877654 479999999999998778889999999999999999999999999999999999
Q ss_pred HHHHHH
Q 028303 164 AAKILQ 169 (210)
Q Consensus 164 ~~~~~~ 169 (210)
.+.+..
T Consensus 162 ~~~i~~ 167 (169)
T 3q85_A 162 VRQIRL 167 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988765
No 46
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=9.6e-33 Score=204.44 Aligned_cols=166 Identities=28% Similarity=0.394 Sum_probs=142.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh-hhHHhhccccEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-ITRSYYRGAAGA 82 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~ 82 (210)
+..+||+|+|++|+|||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.+|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 5679999999999999999999976544333344445556666678899999999999999987765 778889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus 101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~ 180 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE 180 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHH
Confidence 999999999999999999988876543 5799999999999988778888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028303 162 KTAAKILQ 169 (210)
Q Consensus 162 ~l~~~~~~ 169 (210)
.|++.+..
T Consensus 181 ~l~~~i~~ 188 (195)
T 3cbq_A 181 GAVRQIRL 188 (195)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988754
No 47
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=202.43 Aligned_cols=163 Identities=33% Similarity=0.493 Sum_probs=141.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..+ ..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 46799999999999999999999999988888888776663 44678888999999999999988775 67889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEec-CCCCCHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA-RTAQNVEEA 159 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa-~~~~~i~~~ 159 (210)
+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++|| +++.|++++
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~l 176 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHV 176 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHH
Confidence 99999999999999999988876532 57899999999999877778889999999999999999999 899999999
Q ss_pred HHHHHHHHH
Q 028303 160 FIKTAAKIL 168 (210)
Q Consensus 160 ~~~l~~~~~ 168 (210)
|+.|.+.+.
T Consensus 177 f~~l~~~i~ 185 (187)
T 3c5c_A 177 FHEAVREAR 185 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998775
No 48
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.7e-32 Score=201.18 Aligned_cols=169 Identities=37% Similarity=0.508 Sum_probs=147.2
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (210)
|.....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d 100 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGE 100 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCS
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCC
Confidence 4445679999999999999999999999998888888776655 44467888889999999999988 778889999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCC-CHHH
Q 028303 81 GALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEE 158 (210)
Q Consensus 81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~ 158 (210)
++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++. |+++
T Consensus 101 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~ 180 (196)
T 2atv_A 101 GFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITE 180 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHH
Confidence 99999999999999999999888876543 589999999999998777788899999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHH
Q 028303 159 AFIKTAAKILQNI 171 (210)
Q Consensus 159 ~~~~l~~~~~~~~ 171 (210)
+|++|.+.+.+..
T Consensus 181 l~~~l~~~i~~~~ 193 (196)
T 2atv_A 181 IFYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887654
No 49
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=7.3e-33 Score=201.50 Aligned_cols=167 Identities=36% Similarity=0.548 Sum_probs=146.0
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC-EEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
..+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 35679999999999999999999999888766667777777777788876 67899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC--CCCe-EEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHAN--PNMS-IMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 158 (210)
+|+|||++++.++..+..|+..+..... .+.| +++|+||+|+.+.+.+..+++..++...+++++++||+++.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999888766432 2345 889999999987777888899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 028303 159 AFIKTAAKILQ 169 (210)
Q Consensus 159 ~~~~l~~~~~~ 169 (210)
+|++|.+.+..
T Consensus 163 l~~~l~~~~~~ 173 (178)
T 2hxs_A 163 CFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999887743
No 50
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=4e-32 Score=200.60 Aligned_cols=166 Identities=28% Similarity=0.520 Sum_probs=146.4
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
....+||+|+|++|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 4567999999999999999999999999888888887776664 467888999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCCC--CCCCHHHHHHHHHHcCCe-EEEEecCCCCCHHH
Q 028303 83 LLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR--RAVSKEEGEQFAKENGLL-FLEASARTAQNVEE 158 (210)
Q Consensus 83 i~V~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~ 158 (210)
|+|||++++.++..+ ..|+..+... ..+.|+++|+||+|+.+. ..+..+++..++...++. ++++||+++.|+++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence 999999999999997 5677777654 357899999999999753 667888999999999988 99999999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 159 AFIKTAAKILQN 170 (210)
Q Consensus 159 ~~~~l~~~~~~~ 170 (210)
+|++|.+.+...
T Consensus 178 l~~~l~~~i~~~ 189 (194)
T 3reg_A 178 VFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHHhc
Confidence 999999887654
No 51
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=9.6e-32 Score=197.27 Aligned_cols=162 Identities=19% Similarity=0.337 Sum_probs=141.7
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
....+||+|+|++|+|||||+++|++..+...+.++ ...+ ...+.+++..+.+.+|||+|++.+. +++.+|++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 346799999999999999999999999988777776 3333 4667889999999999999998776 77889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCC--CCCCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLA--HRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEE 158 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~ 158 (210)
++|||++++.++..+..|+..+..... .+.|+++|+||+|+. ..+.+..+++.+++...+ ++++++||+++.|+++
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~ 169 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVER 169 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHH
Confidence 999999999999999999999877643 578999999999994 456788889999999986 8999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028303 159 AFIKTAAKILQNI 171 (210)
Q Consensus 159 ~~~~l~~~~~~~~ 171 (210)
+|++|.+.+....
T Consensus 170 lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 170 VFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 52
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.3e-32 Score=198.62 Aligned_cols=165 Identities=50% Similarity=0.859 Sum_probs=149.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 46999999999999999999999999988888888888888888899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ..+..+++..++...+++++++||+++.|++++|++|
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 172 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999888876543 5789999999999943 4567788899999999999999999999999999999
Q ss_pred HHHHHHH
Q 028303 164 AAKILQN 170 (210)
Q Consensus 164 ~~~~~~~ 170 (210)
.+.+.+.
T Consensus 173 ~~~~~~~ 179 (195)
T 1x3s_A 173 VEKIIQT 179 (195)
T ss_dssp HHHHHTS
T ss_pred HHHHHhh
Confidence 9988753
No 53
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=5e-32 Score=194.82 Aligned_cols=163 Identities=36% Similarity=0.558 Sum_probs=143.1
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+|+|++|+|||||+++|.+..+...+.++.+.... ..+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 3689999999999999999999999887777777665553 446788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999888877654 579999999999998777788889999999999999999999999999999999
Q ss_pred HHHHH
Q 028303 164 AAKIL 168 (210)
Q Consensus 164 ~~~~~ 168 (210)
.+.+.
T Consensus 162 ~~~i~ 166 (168)
T 1u8z_A 162 MREIR 166 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 54
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=2.8e-33 Score=208.58 Aligned_cols=174 Identities=29% Similarity=0.488 Sum_probs=116.5
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCceeEEEEEEEEECCE--EEEEEEEecCCcchhhhhhHHhh
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTIDGR--PIKLQIWDTAGQESFRSITRSYY 76 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~ 76 (210)
|+....++|+|+|++|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+|||||++.+...+..++
T Consensus 15 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 94 (208)
T 2yc2_C 15 ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYW 94 (208)
T ss_dssp CSEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTC
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHH
Confidence 34456799999999999999999999998 777777778777777777888876 88999999999999999999999
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEecCCCCC-CCCCCHHHHHHHHHHcCCeEEEEecCC
Q 028303 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAH-RRAVSKEEGEQFAKENGLLFLEASART 152 (210)
Q Consensus 77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~ 152 (210)
+.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++..++...+++++++||++
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 174 (208)
T 2yc2_C 95 NGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANP 174 (208)
T ss_dssp CCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC--
T ss_pred hhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCC
Confidence 999999999999999999999999999887765 5899999999999987 677888999999999999999999999
Q ss_pred -CCCHHHHHHHHHHHHHHHHhhc
Q 028303 153 -AQNVEEAFIKTAAKILQNIQEG 174 (210)
Q Consensus 153 -~~~i~~~~~~l~~~~~~~~~~~ 174 (210)
+.|++++|++|.+.+.+...+.
T Consensus 175 ~~~gi~~l~~~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 175 PGKDADAPFLSIATTFYRNYEDK 197 (208)
T ss_dssp -----CHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988776654
No 55
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=1e-31 Score=196.68 Aligned_cols=167 Identities=35% Similarity=0.541 Sum_probs=149.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 569999999999999999999999988777777766555 3446788888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 175 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 175 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999888877654 579999999999998777788889999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 028303 164 AAKILQNIQ 172 (210)
Q Consensus 164 ~~~~~~~~~ 172 (210)
.+.+.++..
T Consensus 176 ~~~i~~~~~ 184 (187)
T 2a9k_A 176 MREIRARKM 184 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999876554
No 56
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.4e-32 Score=200.50 Aligned_cols=169 Identities=36% Similarity=0.650 Sum_probs=134.9
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4568999999999999999999999999888888887777777777776 556789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEecCCCCC-CCCCCHHHHHHHHH-HcCCeEEEEecCCCCC
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAH-RRAVSKEEGEQFAK-ENGLLFLEASARTAQN 155 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~ 155 (210)
+|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ...+..+++..++. ..+.+++++||+++.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999988876543 5789999999999954 34567788888888 4678899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 028303 156 VEEAFIKTAAKILQNI 171 (210)
Q Consensus 156 i~~~~~~l~~~~~~~~ 171 (210)
++++|++|.+.+.++.
T Consensus 165 i~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 165 VDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999887654
No 57
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-32 Score=203.34 Aligned_cols=163 Identities=29% Similarity=0.441 Sum_probs=141.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+|+|++|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 46799999999999999999999999887777777665544 34667888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ..+..+++..++..++++++++||+++.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 99999999999999888877766543 3689999999999975 45667888889999999999999999999999999
Q ss_pred HHHHHHH
Q 028303 162 KTAAKIL 168 (210)
Q Consensus 162 ~l~~~~~ 168 (210)
+|.+.+.
T Consensus 164 ~l~~~~~ 170 (199)
T 2gf0_A 164 ELLTLET 170 (199)
T ss_dssp HHHHHCS
T ss_pred HHHHHHh
Confidence 9987664
No 58
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=6e-32 Score=194.48 Aligned_cols=161 Identities=37% Similarity=0.599 Sum_probs=143.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
.++|+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999999999888888887766554 4466788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHHH
Q 028303 86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~l 163 (210)
||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++... +.+++++||+++.|++++|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 99999999999999988887653 357999999999999877778888899999887 7899999999999999999999
Q ss_pred HHHH
Q 028303 164 AAKI 167 (210)
Q Consensus 164 ~~~~ 167 (210)
.+.+
T Consensus 162 ~~~i 165 (167)
T 1c1y_A 162 VRQI 165 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=6.8e-32 Score=193.94 Aligned_cols=162 Identities=33% Similarity=0.550 Sum_probs=144.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
.++|+|+|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999988877777765444 55677888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303 86 YDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 999999999999999888876543 5799999999999987777888889999999999999999999999999999998
Q ss_pred HHHH
Q 028303 165 AKIL 168 (210)
Q Consensus 165 ~~~~ 168 (210)
+.+.
T Consensus 162 ~~~~ 165 (167)
T 1kao_A 162 RQMN 165 (167)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 60
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=5.1e-32 Score=194.89 Aligned_cols=163 Identities=28% Similarity=0.412 Sum_probs=123.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
.+||+|+|++|+|||||+++|.+...... .++.+.++ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999997765433 33334444 34567889999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303 86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
||++++.++..+..|+..+.... ..+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999998887653 35799999999999988888889999999999999999999999999999999999
Q ss_pred HHHHHH
Q 028303 165 AKILQN 170 (210)
Q Consensus 165 ~~~~~~ 170 (210)
+.+..+
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988654
No 61
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=3.6e-32 Score=204.18 Aligned_cols=168 Identities=24% Similarity=0.449 Sum_probs=144.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 35699999999999999999999999998888888877763 44667888889999999999999999999999999999
Q ss_pred EEEECCChhhHHH-HHHHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEe
Q 028303 84 LVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEAS 149 (210)
Q Consensus 84 ~V~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 149 (210)
+|||++++.++.. +..|+..+.... .+.|+++|+||+|+.+. +.+..+++..++...++ +++++|
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 182 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS 182 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec
Confidence 9999999999998 688988887764 57999999999999653 66888999999999999 999999
Q ss_pred cCCCCC-HHHHHHHHHHHHHHHHhh
Q 028303 150 ARTAQN-VEEAFIKTAAKILQNIQE 173 (210)
Q Consensus 150 a~~~~~-i~~~~~~l~~~~~~~~~~ 173 (210)
|+++.| ++++|+.|.+.+......
T Consensus 183 A~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 183 AFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp TTTCHHHHHHHHHHHHHHHHC----
T ss_pred cCCCcccHHHHHHHHHHHHhccCcC
Confidence 999998 999999999988765443
No 62
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=199.11 Aligned_cols=168 Identities=30% Similarity=0.510 Sum_probs=138.0
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 45679999999999999999999999888777777766554 44567888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEE
Q 028303 83 LLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEA 148 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 148 (210)
|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+ ...+..+++..++...+. +++++
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC 174 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence 9999999999999987 6888777654 3789999999999965 356777889999988887 89999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHh
Q 028303 149 SARTAQNVEEAFIKTAAKILQNIQ 172 (210)
Q Consensus 149 sa~~~~~i~~~~~~l~~~~~~~~~ 172 (210)
||+++.|++++|++|.+.+.+...
T Consensus 175 Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 175 SALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred ecCCCCCHHHHHHHHHHHHhcccc
Confidence 999999999999999998876644
No 63
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-31 Score=197.61 Aligned_cols=163 Identities=28% Similarity=0.558 Sum_probs=143.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 4679999999999999999999999988877777766555 344667777889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEe
Q 028303 84 LVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEAS 149 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 149 (210)
+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+. +.+..+++..++...++ +++++|
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 999999999999987 7888877654 37899999999999753 46778889999998887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 028303 150 ARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 150 a~~~~~i~~~~~~l~~~~~ 168 (210)
|+++.|++++|++|.+.++
T Consensus 174 a~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 174 ALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998775
No 64
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-31 Score=200.85 Aligned_cols=167 Identities=27% Similarity=0.364 Sum_probs=138.6
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCC--CCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch-hhhhhHHhhccc
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSITRSYYRGA 79 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~ 79 (210)
.++.+||+|+|++|+|||||+++|.+... ...+ ++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 45679999999999999999999996433 3333 3345566667778899999999999999876 455667778899
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303 80 AGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158 (210)
Q Consensus 80 d~~i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 158 (210)
|++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|+++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999988776542 24799999999999987677888888888888899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 159 AFIKTAAKILQN 170 (210)
Q Consensus 159 ~~~~l~~~~~~~ 170 (210)
+|+.|.+.+...
T Consensus 193 lf~~l~~~i~~~ 204 (211)
T 2g3y_A 193 LFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987543
No 65
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1.5e-31 Score=196.08 Aligned_cols=165 Identities=27% Similarity=0.500 Sum_probs=142.2
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 467899999999999999999999999988877888766653 3467788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEE
Q 028303 83 LLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEA 148 (210)
Q Consensus 83 i~V~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 148 (210)
|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. +.++.+++..++..++ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 67887776653 47899999999999642 5577888999998877 789999
Q ss_pred ecC-CCCCHHHHHHHHHHHHHH
Q 028303 149 SAR-TAQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 149 sa~-~~~~i~~~~~~l~~~~~~ 169 (210)
||+ ++.|++++|+.|.+.++.
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 999 689999999999988763
No 66
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=100.00 E-value=1.3e-30 Score=193.34 Aligned_cols=174 Identities=52% Similarity=0.876 Sum_probs=153.4
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccE
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 81 (210)
++++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++
T Consensus 1 m~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 80 (199)
T 2f9l_A 1 MYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG 80 (199)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSE
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCE
Confidence 35778999999999999999999999999888888888888888888899999999999999999999899999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 028303 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 82 ~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 161 (210)
+++|+|+++..++.++..|+..+......+.|+++++||+|+.+......++++.++...++.++++|++++.+++++|+
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 81 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999988888877665555789999999999987677778889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 028303 162 KTAAKILQNIQEGA 175 (210)
Q Consensus 162 ~l~~~~~~~~~~~~ 175 (210)
.|.+.+.....+..
T Consensus 161 ~l~~~~~~~~~~~~ 174 (199)
T 2f9l_A 161 NILTEIYRIVSQKQ 174 (199)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhhcc
Confidence 99999987765443
No 67
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-31 Score=198.12 Aligned_cols=164 Identities=27% Similarity=0.510 Sum_probs=142.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
+..+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 56799999999999999999999999988877888776653 44667888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEEe
Q 028303 84 LVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENG-LLFLEAS 149 (210)
Q Consensus 84 ~V~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~s 149 (210)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+ .+.+..+++..++...+ ++++++|
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 183 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence 99999999999998 67888776654 4789999999999964 24577888999998877 6899999
Q ss_pred cC-CCCCHHHHHHHHHHHHHH
Q 028303 150 AR-TAQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 150 a~-~~~~i~~~~~~l~~~~~~ 169 (210)
|+ ++.|++++|+.|.+.++.
T Consensus 184 Ak~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 184 ALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTTCHHHHHHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHHHHhh
Confidence 99 689999999999998764
No 68
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=6e-31 Score=189.99 Aligned_cols=162 Identities=31% Similarity=0.455 Sum_probs=141.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+|+|++|+|||||+++|.+..+...+.++.+.++. ..+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4689999999999999999999998887777777665543 345678888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+...++..++...+++++++||+++.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999888887766532 47899999999999877777888888899988999999999999999999999
Q ss_pred HHHHH
Q 028303 163 TAAKI 167 (210)
Q Consensus 163 l~~~~ 167 (210)
|.+.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98754
No 69
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.98 E-value=3.4e-30 Score=184.72 Aligned_cols=161 Identities=34% Similarity=0.596 Sum_probs=141.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEE
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V 85 (210)
.++|+++|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 58999999999999999999999988777777755444 44567888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 028303 86 YDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....+++.+++...+++++++|++++.|+++++++|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999888876653 4799999999999976 45667888899999999999999999999999999999
Q ss_pred HHHH
Q 028303 165 AKIL 168 (210)
Q Consensus 165 ~~~~ 168 (210)
+.+.
T Consensus 161 ~~~~ 164 (166)
T 2ce2_X 161 REIR 164 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8774
No 70
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.98 E-value=2.6e-30 Score=190.12 Aligned_cols=165 Identities=35% Similarity=0.595 Sum_probs=134.4
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+|+|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 458999999999999999999999988777777655444 4456788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.. .....+++++++...+++++++||+++.|++++|++|
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 177 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999888876543 5789999999999976 4567788999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028303 164 AAKILQNI 171 (210)
Q Consensus 164 ~~~~~~~~ 171 (210)
.+.+.+..
T Consensus 178 ~~~~~~~~ 185 (190)
T 3con_A 178 VREIRQYR 185 (190)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99887643
No 71
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.98 E-value=1.1e-30 Score=191.03 Aligned_cols=162 Identities=31% Similarity=0.602 Sum_probs=141.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 468999999999999999999999988777777766554 3446788899999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEec
Q 028303 85 VYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASA 150 (210)
Q Consensus 85 V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa 150 (210)
|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+. +.+..+++..++...+. +++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 99999999999987 6877776654 37899999999998653 46677888899998887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 028303 151 RTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 151 ~~~~~i~~~~~~l~~~~~ 168 (210)
+++.|++++|++|.+.+.
T Consensus 162 ~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TTCTTHHHHHHHHHHHHS
T ss_pred CCccCHHHHHHHHHHHHh
Confidence 999999999999988775
No 72
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.98 E-value=1.4e-30 Score=193.44 Aligned_cols=164 Identities=32% Similarity=0.576 Sum_probs=142.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...+||+|+|++|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 457999999999999999999999999888777776666543 3678888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEe
Q 028303 84 LVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEAS 149 (210)
Q Consensus 84 ~V~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 149 (210)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++..++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 56777776543 47899999999999764 45777888999998887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 028303 150 ARTAQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 150 a~~~~~i~~~~~~l~~~~~~ 169 (210)
|+++.|++++|++|.+.+++
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999988753
No 73
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=1.6e-30 Score=194.12 Aligned_cols=164 Identities=29% Similarity=0.561 Sum_probs=137.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...+||+|+|++|+|||||+++|.+..+...+.++.+..+... +.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 4578999999999999999999999998877777766665544 678888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEe
Q 028303 84 LVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEAS 149 (210)
Q Consensus 84 ~V~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 149 (210)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++..++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999988 56777776543 47899999999999654 45677888889988887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 028303 150 ARTAQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 150 a~~~~~i~~~~~~l~~~~~~ 169 (210)
|+++.|++++|++|.+.++.
T Consensus 181 A~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 74
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.98 E-value=8.6e-31 Score=196.57 Aligned_cols=164 Identities=30% Similarity=0.589 Sum_probs=122.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 469999999999999999999999888777777765444 4456788889999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEec
Q 028303 85 VYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASA 150 (210)
Q Consensus 85 V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa 150 (210)
|||++++.++..+. .|+..+.... .+.|+++|+||+|+... +.+..+++..++...++ +++++||
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 99999999999987 6877776654 47899999999999654 25677888999999887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 028303 151 RTAQNVEEAFIKTAAKILQN 170 (210)
Q Consensus 151 ~~~~~i~~~~~~l~~~~~~~ 170 (210)
+++.|++++|+.|.+.+.+.
T Consensus 191 ~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988754
No 75
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=1.9e-31 Score=200.36 Aligned_cols=170 Identities=31% Similarity=0.484 Sum_probs=146.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC-EEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
+..+||+|+|++|+|||||+++|++..+...+.++.+.+.....+...+ ..+.+.+|||||++.+..++..+++.+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 4679999999999999999999999888877777777777666655543 347899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 168 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH 168 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999999998877667999999999999887778888888999889999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 028303 163 TAAKILQNIQE 173 (210)
Q Consensus 163 l~~~~~~~~~~ 173 (210)
|.+.+......
T Consensus 169 l~~~~~~~~~~ 179 (218)
T 4djt_A 169 LARIFTGRPDL 179 (218)
T ss_dssp HHHHHHCCTTC
T ss_pred HHHHHhccccc
Confidence 99988665433
No 76
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.98 E-value=5.4e-32 Score=197.54 Aligned_cols=166 Identities=31% Similarity=0.611 Sum_probs=125.8
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (210)
|...+.+||+|+|++|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 81 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC-CCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE-EEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence 556678999999999999999999999998877777765544332 2445666778899999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCCC----------CCHHHHHHHHHHcCC-eEEEE
Q 028303 81 GALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRA----------VSKEEGEQFAKENGL-LFLEA 148 (210)
Q Consensus 81 ~~i~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~ 148 (210)
++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+... +..+++..++...+. +++++
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 160 (182)
T 3bwd_D 82 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC 160 (182)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999987 6888777654 3789999999999865433 467888889988886 89999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 028303 149 SARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 149 sa~~~~~i~~~~~~l~~~~~ 168 (210)
||+++.|++++|+.|.+.++
T Consensus 161 Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 161 SSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CTTTCTTHHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999988764
No 77
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=1.3e-31 Score=197.83 Aligned_cols=168 Identities=20% Similarity=0.262 Sum_probs=135.3
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------CCCceeEEEEEEE-EECCEEEEEEEEecCCcchhh
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------DLTIGVEFGARMV-TIDGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~~ 69 (210)
..++.+||+|+|++|+|||||++.+.+. +...+ .++.+.++....+ .+++..+.+.+|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3467899999999999999999766654 33332 2343444443333 456778899999999999999
Q ss_pred hhhHHhhccccEEEEEEECC------ChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC
Q 028303 70 SITRSYYRGAAGALLVYDIT------RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL 143 (210)
Q Consensus 70 ~~~~~~~~~~d~~i~V~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 143 (210)
.++..+++.+|++|+|||++ +..++..+..|+..+. ....+.|+++|+||+|+.+ ....+++.+++...++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCC
Confidence 99999999999999999999 4566777777776662 2235799999999999976 3778889999999998
Q ss_pred -eEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 028303 144 -LFLEASARTAQNVEEAFIKTAAKILQNIQE 173 (210)
Q Consensus 144 -~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 173 (210)
+++++||+++.|++++|++|.+.+.+...+
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999887654
No 78
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=8.2e-34 Score=210.64 Aligned_cols=166 Identities=52% Similarity=0.943 Sum_probs=141.2
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 35789999999999999999999999888887778888888888888999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999987776668999999999999877777777788899999999999999999999999999
Q ss_pred HHHHHH
Q 028303 163 TAAKIL 168 (210)
Q Consensus 163 l~~~~~ 168 (210)
|.+.+.
T Consensus 190 l~~~l~ 195 (199)
T 3l0i_B 190 MAAEIK 195 (199)
T ss_dssp HTTTTT
T ss_pred HHHHHH
Confidence 987664
No 79
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=4.1e-30 Score=189.83 Aligned_cols=167 Identities=27% Similarity=0.378 Sum_probs=136.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCC--CCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch-hhhhhHHhhcccc
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSITRSYYRGAA 80 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d 80 (210)
++.+||+|+|++|+|||||+++|.+.. +...+ ++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999999643 33333 3345566666778899999999999999876 4556777888999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 028303 81 GALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159 (210)
Q Consensus 81 ~~i~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 159 (210)
++++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988776653 357899999999999776677888888888888899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 160 FIKTAAKILQNI 171 (210)
Q Consensus 160 ~~~l~~~~~~~~ 171 (210)
|+.|.+.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886544
No 80
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=2e-30 Score=193.22 Aligned_cols=162 Identities=30% Similarity=0.566 Sum_probs=137.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...+||+|+|++|+|||||+++|.+..+...+.++.+.. ....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE-EEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce-eEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 356999999999999999999999998887777776543 4445677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEEe
Q 028303 84 LVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENGL-LFLEAS 149 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 149 (210)
+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.. .+..+++..++...+. +++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 999999999999987 6777776654 578999999999986543 3677888899998886 599999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 028303 150 ARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 150 a~~~~~i~~~~~~l~~~~ 167 (210)
|+++.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 81
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=1.1e-30 Score=196.84 Aligned_cols=164 Identities=30% Similarity=0.589 Sum_probs=145.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...+||+|+|++|+|||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 46799999999999999999998877777777788888888888889999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 163 (210)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+.... .+...++...+++++++||+++.|++++|++|
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 169 (221)
T 3gj0_A 93 IMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 169 (221)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999887764 47899999999999764432 35666788889999999999999999999999
Q ss_pred HHHHHHH
Q 028303 164 AAKILQN 170 (210)
Q Consensus 164 ~~~~~~~ 170 (210)
.+.+...
T Consensus 170 ~~~l~~~ 176 (221)
T 3gj0_A 170 ARKLIGD 176 (221)
T ss_dssp HHHHHTC
T ss_pred HHHHHhC
Confidence 9988654
No 82
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=6e-29 Score=183.40 Aligned_cols=165 Identities=55% Similarity=0.920 Sum_probs=149.4
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
+++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 45679999999999999999999999999888889989888888899999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
++|+|+++..+++++..|+..+......+.|+++++||+|+.+......++++.++...++.++++|++++.+++++|+.
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~ 185 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT 185 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999988888888776655557899999999999876677788899999999999999999999999999999
Q ss_pred HHHHH
Q 028303 163 TAAKI 167 (210)
Q Consensus 163 l~~~~ 167 (210)
|.+.+
T Consensus 186 l~~~i 190 (191)
T 1oix_A 186 ILTEI 190 (191)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98765
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=2.5e-30 Score=191.33 Aligned_cols=163 Identities=15% Similarity=0.266 Sum_probs=129.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
.+.++|+|+|++|+|||||+++|.+..+.. .+.++.+.... .+ +...+.+.+|||||++.+..++..+++.+|++
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 467999999999999999999999999887 67777664433 23 34457899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC--------CCCeEEEEEecCCCCCCCCCCHHHHHHH------HHHcCCeEEEE
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHAN--------PNMSIMLVGNKCDLAHRRAVSKEEGEQF------AKENGLLFLEA 148 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~~ 148 (210)
|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.. ..++.... +...+++++++
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPFVIFAS 168 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCEEEEEC
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCeeEEEEe
Confidence 999999999999999988887765421 278999999999997642 22322221 13466789999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHh
Q 028303 149 SARTAQNVEEAFIKTAAKILQNIQ 172 (210)
Q Consensus 149 sa~~~~~i~~~~~~l~~~~~~~~~ 172 (210)
||+++.|++++|++|.+.+.....
T Consensus 169 Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 169 NGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred eCCCccCHHHHHHHHHHHHHHHhc
Confidence 999999999999999998877643
No 84
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=3.7e-30 Score=184.73 Aligned_cols=156 Identities=19% Similarity=0.325 Sum_probs=121.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEE
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~ 86 (210)
+||+|+|++|+|||||+++|.+..+.. +.+|.+. ....+.. ..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999887754 3445442 2233333 3467999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Q 028303 87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 160 (210)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...++...... ..+++++++||+++.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 9999999999988888776532 257899999999999653 22333332221 134569999999999999999
Q ss_pred HHHHHHHHH
Q 028303 161 IKTAAKILQ 169 (210)
Q Consensus 161 ~~l~~~~~~ 169 (210)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999887653
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=6.6e-29 Score=182.99 Aligned_cols=155 Identities=21% Similarity=0.255 Sum_probs=126.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+++|++|+|||||+++|.+..+.. +.++.+.. ...+.+++ +.+.+|||||++.+..++..+++.+|++++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45799999999999999999999988753 44554543 34556666 778999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH------------cCCeEEEEecC
Q 028303 85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------------NGLLFLEASAR 151 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa~ 151 (210)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ....+++.+.+.. .+++++++||+
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV 174 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence 999999999999999988876542 25799999999999976 4566666665542 34679999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028303 152 TAQNVEEAFIKTAAK 166 (210)
Q Consensus 152 ~~~~i~~~~~~l~~~ 166 (210)
++.|++++|++|.+.
T Consensus 175 ~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 175 MRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTBSHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999998753
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1.2e-29 Score=183.18 Aligned_cols=159 Identities=22% Similarity=0.322 Sum_probs=126.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+|+|++|+|||||+++|.+..+.. +.++.+.. ...+.++ ...+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 356999999999999999999999888754 44454433 3344555 467899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVE 157 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~ 157 (210)
+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.. ..++..... ...+++++++||+++.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 99999999999998888877765432 578999999999996642 223333222 2235679999999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 158 EAFIKTAAKILQ 169 (210)
Q Consensus 158 ~~~~~l~~~~~~ 169 (210)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999988753
No 87
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=4e-29 Score=183.72 Aligned_cols=160 Identities=18% Similarity=0.292 Sum_probs=128.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+|+|++|+|||||+++|.+..+...+.++.+.++.. +... .+.+.+|||||++.+...+..+++.+|++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 457999999999999999999999998887777777766543 3333 567899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 157 (210)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++...... ..+++++++||+++.|++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 9999999999999998888776542 2579999999999996532 2333322221 234578999999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 158 EAFIKTAAKILQ 169 (210)
Q Consensus 158 ~~~~~l~~~~~~ 169 (210)
++|++|.+.+.+
T Consensus 174 ~l~~~l~~~~~~ 185 (188)
T 1zd9_A 174 ITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999886643
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=2.6e-29 Score=186.38 Aligned_cols=155 Identities=23% Similarity=0.294 Sum_probs=121.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+++|++|+|||||+++|.+..+. .+.+|.+.+ ...+.+++ +.+.+|||||++.+..++..+++.+|++++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 4589999999999999999999988764 344454443 34456666 678999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----------------cCCeEE
Q 028303 85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----------------NGLLFL 146 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 146 (210)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ .+..+++.+++.. .+++++
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence 999999999999999988876542 25799999999999975 5667777777653 245799
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q 028303 147 EASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 147 ~~sa~~~~~i~~~~~~l~~~ 166 (210)
++||++|.|++++|++|.+.
T Consensus 177 ~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 177 MCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998754
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=9.4e-29 Score=181.90 Aligned_cols=159 Identities=18% Similarity=0.274 Sum_probs=128.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCC-CCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 82 (210)
...++|+|+|++|+|||||+++|.+.. +...+.++.+ .....+.+++ +.+.+|||||++.+...+..+++.+|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 456999999999999999999999887 4555556655 3344455554 6789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCC
Q 028303 83 LLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQ 154 (210)
Q Consensus 83 i~V~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~ 154 (210)
|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ....+++.+.+. ..+++++++||+++.
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGE 172 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence 999999999999999998888776533 4789999999999965 344566666553 235679999999999
Q ss_pred CHHHHHHHHHHHHH
Q 028303 155 NVEEAFIKTAAKIL 168 (210)
Q Consensus 155 ~i~~~~~~l~~~~~ 168 (210)
|++++|++|.+.+.
T Consensus 173 gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 173 GLQEGVDWLQDQIQ 186 (190)
T ss_dssp THHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=1.2e-28 Score=180.64 Aligned_cols=160 Identities=21% Similarity=0.303 Sum_probs=128.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+|+|++|+|||||+++|.+.. ...+.++.+.. ...+.++ .+.+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999888 55666665643 3344455 467899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 157 (210)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..+++.+... ..+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999988888776542 2579999999999997642 3344443332 235679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028303 158 EAFIKTAAKILQN 170 (210)
Q Consensus 158 ~~~~~l~~~~~~~ 170 (210)
++|++|.+.+.+.
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887543
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1e-28 Score=181.22 Aligned_cols=162 Identities=24% Similarity=0.346 Sum_probs=124.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+|+|++|+|||||+++|.+..+. .+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999988775 444454432 33344554 67899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 157 (210)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ....+++.+... ..+++++++||+++.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999988886642 25799999999999965 334455554433 235689999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 028303 158 EAFIKTAAKILQNIQ 172 (210)
Q Consensus 158 ~~~~~l~~~~~~~~~ 172 (210)
++|++|.+.+....+
T Consensus 167 ~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLE 181 (187)
T ss_dssp HHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999987654433
No 92
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=7.9e-28 Score=191.28 Aligned_cols=163 Identities=31% Similarity=0.580 Sum_probs=142.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 458999999999999999999999988888777766555 4456788889999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEec
Q 028303 85 VYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASA 150 (210)
Q Consensus 85 V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa 150 (210)
|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. ..+..+++..++...++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999987 67777766543 7899999999998543 56778889999999887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 028303 151 RTAQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 151 ~~~~~i~~~~~~l~~~~~~ 169 (210)
+++.|++++|+.|.+.++.
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999987753
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=2.2e-29 Score=185.81 Aligned_cols=158 Identities=18% Similarity=0.307 Sum_probs=118.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+|+|++|+|||||+++|.+..+.. +.+|.+ .....+... .+.+.+|||||++.+...+..+++.+|++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 457999999999999999999999877653 333433 233334444 467899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 157 (210)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||+++.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 9999999999999998888776532 257999999999999653 22333332221 224569999999999999
Q ss_pred HHHHHHHHHHH
Q 028303 158 EAFIKTAAKIL 168 (210)
Q Consensus 158 ~~~~~l~~~~~ 168 (210)
++|++|.+.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=1.5e-29 Score=185.38 Aligned_cols=163 Identities=23% Similarity=0.414 Sum_probs=120.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCceeEEEEEEEEE---CCEEEEEEEEecCCcchhhhhhHHhhcccc
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTI---DGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 80 (210)
.+||+|+|++|+|||||+++|.+. .+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++.+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 455556677777766555443 335678999999999999999999999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC---HHHHHHHHHHcCCe----EEEEecCC
Q 028303 81 GALLVYDITRR-ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS---KEEGEQFAKENGLL----FLEASART 152 (210)
Q Consensus 81 ~~i~V~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~sa~~ 152 (210)
++++|||++++ .++..+..|+..+.... .+.|+++|+||+|+.+..... .+.+..++...+++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999997 57889999998886653 478999999999986543322 22334555556676 99999999
Q ss_pred CC-CHHHHHHHHHHHHHH
Q 028303 153 AQ-NVEEAFIKTAAKILQ 169 (210)
Q Consensus 153 ~~-~i~~~~~~l~~~~~~ 169 (210)
+. +++++++.|.+.+.+
T Consensus 161 ~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 161 ESDALAKLRKTIINESLN 178 (184)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHhc
Confidence 96 888888888776543
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=2.5e-28 Score=178.48 Aligned_cols=159 Identities=21% Similarity=0.303 Sum_probs=123.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
+..++|+++|++|+|||||+++|.+..+. .+.++.+. ....+.++ .+.+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999999987542 23344443 23344555 467899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 157 (210)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..+++.+... ..+++++++||+++.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 9999999999999988887765432 2578999999999997543 2333333221 234579999999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 158 EAFIKTAAKILQ 169 (210)
Q Consensus 158 ~~~~~l~~~~~~ 169 (210)
++|++|.+.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 96
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=1.6e-28 Score=179.45 Aligned_cols=156 Identities=25% Similarity=0.346 Sum_probs=123.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+|+|++|+|||||+++|.+..+ ..+.++.+... ..+.+++ +.+.+|||||++.+...+..+++.+|++|
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3569999999999999999999999877 34444444333 3344554 67899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 157 (210)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||+++.|++
T Consensus 94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 171 (181)
T 2h17_A 94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 171 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999998888776542 257999999999999652 33455544432 234579999999999999
Q ss_pred HHHHHHHHH
Q 028303 158 EAFIKTAAK 166 (210)
Q Consensus 158 ~~~~~l~~~ 166 (210)
++|++|.+.
T Consensus 172 ~l~~~l~~~ 180 (181)
T 2h17_A 172 QGLEWMMSR 180 (181)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999998764
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=3.8e-28 Score=177.34 Aligned_cols=161 Identities=22% Similarity=0.323 Sum_probs=124.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+|+|++|+|||||+++|.+..+ ..+.++.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998776 4444554533 33344554 67899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVE 157 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~ 157 (210)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+.... .+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999888876543 357999999999999653 334444444322 23479999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028303 158 EAFIKTAAKILQNI 171 (210)
Q Consensus 158 ~~~~~l~~~~~~~~ 171 (210)
++|++|.+.+.+++
T Consensus 169 ~l~~~l~~~~~~~q 182 (183)
T 1moz_A 169 EGLDWLIDVIKEEQ 182 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999886543
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=5.9e-31 Score=195.87 Aligned_cols=162 Identities=31% Similarity=0.593 Sum_probs=135.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4579999999999999999999998888777666655444 334566777888999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEEe
Q 028303 84 LVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENGL-LFLEAS 149 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 149 (210)
+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.. .+..+++..++...++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999998887 6777665543 378999999999996542 4555667778888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 028303 150 ARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 150 a~~~~~i~~~~~~l~~~~ 167 (210)
|+++.|++++|+.|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=3.1e-29 Score=184.28 Aligned_cols=159 Identities=19% Similarity=0.299 Sum_probs=125.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
.+.++|+|+|++|+|||||+++|.+..+.. +.++.+.. ...+.++ .+.+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999998877643 34454432 3334455 467899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVE 157 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~ 157 (210)
+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.. ..++..... ...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 99999999999998888877765432 579999999999996542 223333222 2234579999999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 158 EAFIKTAAKILQ 169 (210)
Q Consensus 158 ~~~~~l~~~~~~ 169 (210)
++|++|.+.+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (189)
T 2x77_A 173 EGMDWLVERLRE 184 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=1.8e-28 Score=181.44 Aligned_cols=161 Identities=24% Similarity=0.301 Sum_probs=120.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEecCCcchhhhhh---HHhhccc
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSIT---RSYYRGA 79 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~---~~~~~~~ 79 (210)
++.+||+|+|++|+|||||++++.+... .........+.......+. +..+.+.+|||||++.+.... ..+++.+
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 96 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT 96 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence 4679999999999999999998887532 2222211222222222332 566789999999999987776 8999999
Q ss_pred cEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC-------CCCCCHHHHHHHHH----HcCCeEE
Q 028303 80 AGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-------RRAVSKEEGEQFAK----ENGLLFL 146 (210)
Q Consensus 80 d~~i~V~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------~~~~~~~~~~~~~~----~~~~~~~ 146 (210)
|++|+|||++++ +++..+..|+..+... ..+.|+++|+||+|+.+ .+.+..+++..++. ..+++++
T Consensus 97 ~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 175 (196)
T 3llu_A 97 GALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFY 175 (196)
T ss_dssp SEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEE
T ss_pred CEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceE
Confidence 999999999997 6667777777766433 35799999999999854 23344455667777 6678999
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 028303 147 EASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 147 ~~sa~~~~~i~~~~~~l~~~~ 167 (210)
++||++ .|++++|+.|++.+
T Consensus 176 e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 176 LTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EECTTS-THHHHHHHHHHHHT
T ss_pred EEEech-hhHHHHHHHHHHHh
Confidence 999999 99999999998765
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=3e-27 Score=170.20 Aligned_cols=153 Identities=21% Similarity=0.204 Sum_probs=114.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh------hhhHHhhc--
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------SITRSYYR-- 77 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-- 77 (210)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||++.+. .+...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 48999999999999999999998766544444444444555555665 468899999988764 34455654
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157 (210)
Q Consensus 78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 157 (210)
.+|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+.+...+.. ++..++...+++++++||+++.|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999998643 3446655544 2689999999999865433332 3667777888999999999999999
Q ss_pred HHHHHHHHHH
Q 028303 158 EAFIKTAAKI 167 (210)
Q Consensus 158 ~~~~~l~~~~ 167 (210)
++|++|.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=1.4e-27 Score=178.86 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=114.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCE-EEEEEEEecCCcchhhh-hhHHhhccccE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR-PIKLQIWDTAGQESFRS-ITRSYYRGAAG 81 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d~ 81 (210)
...++|+|+|++|+|||||+++|++..+...+.++ +..... +.+++. .+.+.+|||||++.+.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 45799999999999999999999999887766543 333333 555543 57899999999999988 78889999999
Q ss_pred EEEEEECCChh-hHHHHHHHHHHH-Hhh--cCCCCeEEEEEecCCCCCCCCCCHHHHHH----HHH--------------
Q 028303 82 ALLVYDITRRE-TFNHLSSWLEDA-RQH--ANPNMSIMLVGNKCDLAHRRAVSKEEGEQ----FAK-------------- 139 (210)
Q Consensus 82 ~i~V~d~~~~~-s~~~~~~~~~~~-~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~-------------- 139 (210)
+|+|||+++.. ++.....++..+ ... ...+.|+++|+||+|+.+... .++..+ ...
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~s~~~ 159 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--AKLIQQQLEKELNTLRVTRSAAPSTLD 159 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--HHHHHHHHHHHHHHHHHHCC-------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--HHHHHHHHHHHHHHHhccchhcccccc
Confidence 99999999854 455555544433 321 235789999999999975432 121111 111
Q ss_pred -------------------Hc--CCeEEEEecCCC------CCHHHHHHHHHHH
Q 028303 140 -------------------EN--GLLFLEASARTA------QNVEEAFIKTAAK 166 (210)
Q Consensus 140 -------------------~~--~~~~~~~sa~~~------~~i~~~~~~l~~~ 166 (210)
.. .++|+++||+++ .|++++|++|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1.2e-26 Score=175.48 Aligned_cols=169 Identities=18% Similarity=0.101 Sum_probs=118.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCc------chh---hhhhHH
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ------ESF---RSITRS 74 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~---~~~~~~ 74 (210)
...++|+|+|++|+|||||+++|++..+.....+..+.+.....+...+ ..+.+|||||+ +.. ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 3569999999999999999999998876432222223333333333443 57899999998 331 112334
Q ss_pred hhccccEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH---HHHHHHHHcC--CeEEE
Q 028303 75 YYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE---EGEQFAKENG--LLFLE 147 (210)
Q Consensus 75 ~~~~~d~~i~V~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~ 147 (210)
++..+|++|+|||++++.++. ....|+..+... ..+.|+++|+||+|+.+...+..+ .+..++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 577889999999999987754 223445444432 137899999999999876666544 4556666666 88999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhhcc
Q 028303 148 ASARTAQNVEEAFIKTAAKILQNIQEGA 175 (210)
Q Consensus 148 ~sa~~~~~i~~~~~~l~~~~~~~~~~~~ 175 (210)
+||+++.|++++|++|.+.+.+...+..
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~~~~~ 211 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQAESI 211 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987765543
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=5.7e-27 Score=170.23 Aligned_cols=160 Identities=19% Similarity=0.186 Sum_probs=120.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
+..++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++. .+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 46789999999999999999999999887776666665665556667764 4679999999999999889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEecCCCC
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG---------LLFLEASARTAQ 154 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~~~ 154 (210)
+|+|++++...... .++..+ ...+.|+++|+||+|+.+. ..++......... ++++++||+++.
T Consensus 84 ~v~d~~~~~~~~~~-~~l~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (178)
T 2lkc_A 84 LVVAADDGVMPQTV-EAINHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE 156 (178)
T ss_dssp EEEETTCCCCHHHH-HHHHHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred EEEECCCCCcHHHH-HHHHHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence 99999884322222 112222 2247899999999999653 2333433333221 479999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 028303 155 NVEEAFIKTAAKILQNIQ 172 (210)
Q Consensus 155 ~i~~~~~~l~~~~~~~~~ 172 (210)
|++++|++|.+.+.....
T Consensus 157 gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 157 GLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHhhhhhcc
Confidence 999999999887765433
No 105
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.94 E-value=4.3e-28 Score=186.55 Aligned_cols=164 Identities=27% Similarity=0.419 Sum_probs=120.9
Q ss_pred CCceEEEEEEcCC---------CCCHHHHHHHHHh---CCCCCCCCCCc-eeEEEEEE--------------EEECCEEE
Q 028303 3 YDYLFKYIIIGDT---------GVGKSCLLLQFTD---KRFQPVHDLTI-GVEFGARM--------------VTIDGRPI 55 (210)
Q Consensus 3 ~~~~~~i~v~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~ 55 (210)
..+.+||+|+|.+ |+|||||+++|++ ..+...+.++. +.++.... ..+++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3567999999999 9999999999998 45555555543 22221111 12456778
Q ss_pred EEEEEe-----------------------cCCcchhhhhhHHhhc---------------------cccEEEEEEECCCh
Q 028303 56 KLQIWD-----------------------TAGQESFRSITRSYYR---------------------GAAGALLVYDITRR 91 (210)
Q Consensus 56 ~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~V~d~~~~ 91 (210)
.+.||| ++|++.+..++..+++ ++|++|+|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 899999 6666766667777776 79999999999998
Q ss_pred --hhHHHHHHHHHHHHhh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 92 --ETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 92 --~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+ +++..++.. .+++++++||+++.|++++|++|.+.+
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999888665 2357999999999998654333 567777776 478999999999999999999998876
Q ss_pred H
Q 028303 168 L 168 (210)
Q Consensus 168 ~ 168 (210)
.
T Consensus 254 ~ 254 (255)
T 3c5h_A 254 D 254 (255)
T ss_dssp H
T ss_pred c
Confidence 3
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=9.9e-27 Score=183.44 Aligned_cols=162 Identities=20% Similarity=0.341 Sum_probs=127.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh-----hhhhHHhh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-----RSITRSYY 76 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~ 76 (210)
..+||+|+|++|+|||||+++|++..... .+.+|.+.... .+.+++ .+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 46899999999999999999999873322 33445444444 344444 678999999999988 67888999
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEecCCCCC--CCC----CCHHHHHHHHHHcC---CeE
Q 028303 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAH--RRA----VSKEEGEQFAKENG---LLF 145 (210)
Q Consensus 77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 145 (210)
+.+|++|+|||++++.++.++..|...+.... ..++|+++|+||+|+.+ .+. ...+++.+++..++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877765554332 35799999999999976 333 44567788888886 789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHH
Q 028303 146 LEASARTAQNVEEAFIKTAAKILQN 170 (210)
Q Consensus 146 ~~~sa~~~~~i~~~~~~l~~~~~~~ 170 (210)
+++||++ .++.++|..+++.+...
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~~ 182 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIPN 182 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred EEeeecC-ChHHHHHHHHHHHHcCC
Confidence 9999999 89999998887765443
No 107
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=3.3e-26 Score=168.70 Aligned_cols=158 Identities=15% Similarity=0.203 Sum_probs=109.1
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC----------cchhhhhh
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSIT 72 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 72 (210)
....++|+|+|++|+|||||+++|.+..+.....++.+.+.......+++ .+.+||||| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34679999999999999999999999876555555555555555455544 578999999 77777778
Q ss_pred HHhhccc---cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCH--HHHHH-HHHHcCCeEE
Q 028303 73 RSYYRGA---AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK--EEGEQ-FAKENGLLFL 146 (210)
Q Consensus 73 ~~~~~~~---d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~ 146 (210)
..+++.+ |++++|+|++++.+..... ++..+.. .+.|+++|+||+|+.+...... +++.+ +....+.+++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 8888777 9999999999877665542 1222222 3789999999999976443321 22332 2222457899
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 028303 147 EASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 147 ~~sa~~~~~i~~~~~~l~~~~ 167 (210)
++||+++.|++++|++|.+.+
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEccCCCCHHHHHHHHHHHh
Confidence 999999999999999998765
No 108
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=183.42 Aligned_cols=158 Identities=19% Similarity=0.305 Sum_probs=118.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+|+|++|+|||||+++|.+..+.... +|.+... ..+... .+.+.||||||++.+..++..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4579999999999999999999988764432 3333332 223333 4678999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVEE 158 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~ 158 (210)
|||++++.++..+..|+..+..... .++|+++|+||+|+.+.. ..+++...... .+++++++||+++.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 9999999999999888777654432 579999999999997533 23333333222 245699999999999999
Q ss_pred HHHHHHHHHHH
Q 028303 159 AFIKTAAKILQ 169 (210)
Q Consensus 159 ~~~~l~~~~~~ 169 (210)
+|+.|.+.+.+
T Consensus 317 l~~~l~~~l~~ 327 (329)
T 3o47_A 317 GLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=4.6e-26 Score=167.00 Aligned_cols=157 Identities=20% Similarity=0.197 Sum_probs=121.1
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh------hhhHHhhc-
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------SITRSYYR- 77 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 77 (210)
..++|+|+|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||++.+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 468999999999999999999998765444445555566666666665 568899999988764 34555654
Q ss_pred -cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303 78 -GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (210)
Q Consensus 78 -~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 156 (210)
.+|++++|+|+++ +.....|+..+.. .+.|+++|+||+|+.+...+. .++..++...+++++++||+++.|+
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence 4899999999876 3445566666654 378999999999986544333 3466778888899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028303 157 EEAFIKTAAKILQN 170 (210)
Q Consensus 157 ~~~~~~l~~~~~~~ 170 (210)
+++|++|.+.+...
T Consensus 157 ~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 157 EELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998877543
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=3.1e-26 Score=167.98 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=113.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC-----------cchhhhhhHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG-----------QESFRSITRSY 75 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 75 (210)
++|+|+|++|+|||||+++|.+..+...+.++.+... ..+.+. .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999887666555443322 233333 578999999 66777777777
Q ss_pred hcc-ccEEEEEEECCChhhHHHH-HHHHHH---------HHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe
Q 028303 76 YRG-AAGALLVYDITRRETFNHL-SSWLED---------ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 144 (210)
Q Consensus 76 ~~~-~d~~i~V~d~~~~~s~~~~-~~~~~~---------~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 144 (210)
++. ++++++|+++.+..++..+ ..|... +......+.|+++|+||+|+.+.. .+++.+++...+++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 6655555555556666665 344431 122222478999999999997544 56677788877764
Q ss_pred -------EEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303 145 -------FLEASARTAQNVEEAFIKTAAKILQNI 171 (210)
Q Consensus 145 -------~~~~sa~~~~~i~~~~~~l~~~~~~~~ 171 (210)
++++||+++.|++++|++|.+.+....
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 799999999999999999998876543
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=2.4e-25 Score=186.30 Aligned_cols=163 Identities=19% Similarity=0.343 Sum_probs=125.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 83 (210)
...++|+|+|.+|+|||||+++|++..+.. +.+|.+..... +. ...+.+.+|||||++.+..++..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET--VT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEE--EE--SSSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEEE--EE--eCCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 456999999999999999999999988544 34455544432 33 34468999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 028303 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (210)
Q Consensus 84 ~V~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 157 (210)
+|||++++.++..+..|+..+..... .++|+|+|+||+|+.+. ...++...... ..+++++++||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 99999999999999988888765432 57999999999999653 23333333221 123459999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 028303 158 EAFIKTAAKILQNIQE 173 (210)
Q Consensus 158 ~~~~~l~~~~~~~~~~ 173 (210)
++|++|.+.+.+..++
T Consensus 473 ~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLAA 488 (497)
T ss_dssp HHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999887655544
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=8e-26 Score=161.45 Aligned_cols=150 Identities=19% Similarity=0.179 Sum_probs=106.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcch-------hhhhhHHhhcc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-------FRSITRSYYRG 78 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 78 (210)
+||+++|++|+|||||+++|.+..+.. ...++.+.+.....+..++. .+.+|||||... +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 689999999999999999999887542 22233344444455556664 678999999876 34566778899
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHH
Q 028303 79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVE 157 (210)
Q Consensus 79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 157 (210)
+|++++|+|++++.+... .++..+... .+.|+++|+||+|+.+.. +++.+++ ..++ +++++||+++.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998644322 222222222 268999999999996542 3334444 5566 79999999999999
Q ss_pred HHHHHHHHHH
Q 028303 158 EAFIKTAAKI 167 (210)
Q Consensus 158 ~~~~~l~~~~ 167 (210)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999988754
No 113
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=3.4e-27 Score=185.21 Aligned_cols=159 Identities=18% Similarity=0.243 Sum_probs=119.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh---hhHHhhccccE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---ITRSYYRGAAG 81 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ 81 (210)
||+++|+.|+|||||++++.+..... ...+|.+.++.. ++ ..+++++|||+|++.|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999987654322 234555555432 33 347899999999999964 46889999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCC-------CCCCHHHHHHHHHH----cCCeEEEE
Q 028303 82 ALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-------RAVSKEEGEQFAKE----NGLLFLEA 148 (210)
Q Consensus 82 ~i~V~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 148 (210)
+|+|||+++. .....+..|+..+... .+++|+++++||+|+..+ +.+..++++++++. .++.|+++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 3333333344444333 357999999999999753 23555666777775 57889999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHhh
Q 028303 149 SARTAQNVEEAFIKTAAKILQNIQE 173 (210)
Q Consensus 149 sa~~~~~i~~~~~~l~~~~~~~~~~ 173 (210)
||++ .++.++|..+++.+.+..+.
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~~~ 178 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPELSF 178 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTHHH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhHHH
Confidence 9998 68999999999887766554
No 114
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=3e-25 Score=170.83 Aligned_cols=156 Identities=21% Similarity=0.195 Sum_probs=118.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh------hhHHhh-
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS------ITRSYY- 76 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~- 76 (210)
...++|+|+|++|+|||||+++|++..+.....+..+.+.....+...+ ..+.+|||||...+.. +...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4578999999999999999999998776443344445554444454444 6789999999876654 234454
Q ss_pred -ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303 77 -RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (210)
Q Consensus 77 -~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 155 (210)
..+|++++|+|+++.++.. .|...+.. .+.|+++|+||+|+.+...+.. ++..++..++++++++||+++.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence 5899999999999876432 34444443 3789999999999865444442 36778888899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028303 156 VEEAFIKTAAKIL 168 (210)
Q Consensus 156 i~~~~~~l~~~~~ 168 (210)
++++|+.|.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988653
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=7.4e-26 Score=164.11 Aligned_cols=153 Identities=22% Similarity=0.239 Sum_probs=111.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh------h--hHHh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS------I--TRSY 75 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~--~~~~ 75 (210)
..++|+|+|++|+|||||+++|.+..... ...++.+.++....+.+++. .+.+|||||++.+.. . ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 45899999999999999999999876432 22233344555556667764 478999999864321 1 1245
Q ss_pred hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 155 (210)
++.+|++++|+|++++.++. ...|+..+......++|+++|+||+|+.+... .++...+.+++++||+++.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 78999999999999987765 34676666665545799999999999854221 11122456899999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 156 VEEAFIKTAAKI 167 (210)
Q Consensus 156 i~~~~~~l~~~~ 167 (210)
++++|+.|.+.+
T Consensus 153 v~~l~~~l~~~~ 164 (172)
T 2gj8_A 153 VDVLRNHLKQSM 164 (172)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 116
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=1e-24 Score=171.97 Aligned_cols=161 Identities=17% Similarity=0.088 Sum_probs=122.4
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-ceeEEEEEEEEECCEEEEEEEEecCCcchhh----------hh
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-IGVEFGARMVTIDGRPIKLQIWDTAGQESFR----------SI 71 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~ 71 (210)
..+.-.|+++|.+|+|||||+|+|++..+......+ .+..........+ ....+.+|||||...+. ..
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 345678999999999999999999998876433222 2222222223333 14678899999985433 56
Q ss_pred hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CeEEEEe
Q 028303 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEAS 149 (210)
Q Consensus 72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s 149 (210)
...+++.+|++++|+|++++.+..+...|+..+... +.|+++|+||+|+........+.+..+....+ .+++++|
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS 162 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS 162 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 677889999999999999988877777777766653 68999999999997444445566667777765 7899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 028303 150 ARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 150 a~~~~~i~~~~~~l~~~~ 167 (210)
|+++.|++++|+.|.+.+
T Consensus 163 A~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 163 ALKGANLDELVKTILKYL 180 (308)
T ss_dssp TTTTBSHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 999999999999988766
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=3.9e-26 Score=192.56 Aligned_cols=164 Identities=19% Similarity=0.254 Sum_probs=124.0
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEE------EE--ECCEEEEEEEEecCCcchhhhhhHH
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM------VT--IDGRPIKLQIWDTAGQESFRSITRS 74 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~i~D~~G~~~~~~~~~~ 74 (210)
....+||+|+|.+|+|||||+++|++..+...+.++.+.++.... +. .++..+.+.+||+||++.+..+...
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456799999999999999999999999888777777777665442 11 1234578999999999999999999
Q ss_pred hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 028303 75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ 154 (210)
Q Consensus 75 ~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 154 (210)
+++.+|++|+|+|+++. +.+..|+..+.... .+.|+++|+||+|+.+...+..++++.++...+++++++||+++.
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 99999999999999865 45667777777664 368999999999998877788888888888889999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 028303 155 NVEEAFIKTAAKILQN 170 (210)
Q Consensus 155 ~i~~~~~~l~~~~~~~ 170 (210)
|++++++.|.+.+...
T Consensus 194 gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 194 GVESIAKSLKSAVLHP 209 (535)
T ss_dssp -CTTHHHHHHHHHTCT
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999998877543
No 118
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=8.8e-25 Score=160.77 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=111.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC----------cchhhhhhH
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSITR 73 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~ 73 (210)
...++|+|+|++|+|||||+++|++.... ...++.+.+........+. .+.+||||| ++.+..++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence 45689999999999999999999998743 3333334444433333333 467999999 666777777
Q ss_pred Hhhccc---cEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEecCCCCCCC--CCCHHHHHHHHHHc-CCeE
Q 028303 74 SYYRGA---AGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRR--AVSKEEGEQFAKEN-GLLF 145 (210)
Q Consensus 74 ~~~~~~---d~~i~V~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~-~~~~ 145 (210)
.+++.+ |++++|+|+++..+... +..|+.. . +.|+++|+||+|+.+.. ....+++..++... .+++
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI 170 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce
Confidence 777766 99999999987644322 2233322 2 68999999999986532 22334555566553 4789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q 028303 146 LEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 146 ~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
+++||+++.|++++|++|.+.+.
T Consensus 171 ~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 171 IPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999988764
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=2.5e-25 Score=172.28 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=114.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh------hhhHHhhc-
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------SITRSYYR- 77 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 77 (210)
..++|+++|++|+|||||+++|++........+. .+.......+.. ...+.+|||||+..+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg--~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPG--VTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSC--CCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCC--CcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 4689999999999999999999987643333332 233333344555 5678999999988765 45566665
Q ss_pred -cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303 78 -GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (210)
Q Consensus 78 -~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 156 (210)
.+|++++|+|+++.+.. ..|...+.. .+.|+++++||+|+.+...+. .++..++..++++++++||+++.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999886543 345444444 378999999999986543333 3456777888999999999999999
Q ss_pred HHHHHHHHHHH
Q 028303 157 EEAFIKTAAKI 167 (210)
Q Consensus 157 ~~~~~~l~~~~ 167 (210)
+++|+.|.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=2.6e-25 Score=170.90 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=115.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh----------hhHHhh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----------ITRSYY 76 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 76 (210)
.+|+|+|++|||||||+|+|++........++.+.+.....+.+++. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998765545556566666666777764 688999999876653 455666
Q ss_pred --ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 028303 77 --RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ 154 (210)
Q Consensus 77 --~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 154 (210)
..+|++|+|+|+++.+....+..+ +. ..+.|+++|+||+|+.+...... ....+....+++++++||+++.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 899999999999986554443332 22 23789999999999864333221 2445677789999999999999
Q ss_pred CHHHHHHHHHHH
Q 028303 155 NVEEAFIKTAAK 166 (210)
Q Consensus 155 ~i~~~~~~l~~~ 166 (210)
|++++|+.|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998764
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=8e-25 Score=164.65 Aligned_cols=165 Identities=15% Similarity=0.122 Sum_probs=109.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC-CEEEEEEEEecCCc----------chhhhhh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQ----------ESFRSIT 72 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~~~~~ 72 (210)
...++|+|+|++|+|||||+++|++...........+.+.......+. .....+.+|||||. +.+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 456899999999999999999999986322222222233333333443 33457889999994 4445566
Q ss_pred HHhhcc---ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHH-------
Q 028303 73 RSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKE------- 140 (210)
Q Consensus 73 ~~~~~~---~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~------- 140 (210)
..+++. +|++++|+|++++.+.. ...++..+.. .+.|+++|+||+|+...... ..++..+.+..
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~ 182 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA 182 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence 666665 78899999998754422 2234444433 36899999999998653321 11222233333
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028303 141 NGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172 (210)
Q Consensus 141 ~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 172 (210)
...+++++||+++.|++++|++|.+.+.....
T Consensus 183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 183 GKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp SCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred CCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 45779999999999999999999988765443
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=2.4e-24 Score=167.08 Aligned_cols=155 Identities=21% Similarity=0.190 Sum_probs=118.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh------hhHHhh--c
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS------ITRSYY--R 77 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~ 77 (210)
.++|+|+|++|+|||||+++|++..+.....++.+.+.....+.+.+. .+.+|||||...+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 589999999999999999999998775555556666666666666664 488999999877665 455555 6
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157 (210)
Q Consensus 78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 157 (210)
.+|++++|+|+++... ...++..+.... ..|+++|+||+|+.+....... ...+...++++++++|++++.|++
T Consensus 81 ~~d~vi~v~D~~~~~~---~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 81 NADVIVDIVDSTCLMR---NLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp CCSEEEEEEEGGGHHH---HHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred CCcEEEEEecCCcchh---hHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence 8999999999988642 233444444331 2899999999998543333222 566777889999999999999999
Q ss_pred HHHHHHHHHHH
Q 028303 158 EAFIKTAAKIL 168 (210)
Q Consensus 158 ~~~~~l~~~~~ 168 (210)
++++.+.+.+.
T Consensus 155 ~l~~~i~~~~~ 165 (271)
T 3k53_A 155 ELKRMIALMAE 165 (271)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=1.2e-24 Score=169.00 Aligned_cols=154 Identities=17% Similarity=0.148 Sum_probs=114.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh----------hhHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----------ITRSY 75 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~ 75 (210)
.++|+|+|++|+|||||+|+|++..+.....++.+.+.....+...+ ..+.+|||||...+.. ....+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 58999999999999999999999876444445555566555565555 3577999999876552 23333
Q ss_pred h--ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCC
Q 028303 76 Y--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA 153 (210)
Q Consensus 76 ~--~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 153 (210)
+ +.+|++++|+|+++.+....+..+ +... ++|+++|+||+|+.+..... .....+....+++++++||+++
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence 3 799999999999986654443333 3333 78999999999985433322 1245677778899999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 028303 154 QNVEEAFIKTAAKIL 168 (210)
Q Consensus 154 ~~i~~~~~~l~~~~~ 168 (210)
.|++++++.|.+.+.
T Consensus 154 ~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 154 RGIEALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999998876543
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=9.8e-25 Score=163.69 Aligned_cols=143 Identities=20% Similarity=0.280 Sum_probs=105.2
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcc--
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG-- 78 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-- 78 (210)
...++|+|+|++|+|||||+++|.+..+... +.++.+. +.....+.+|||||++.+...+..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET---------TGGGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE---------EeeCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999876542 2222221 1234578899999999998888888877
Q ss_pred --ccEEEEEEECC-ChhhHHHHHHHHHHHHhh----cCCCCeEEEEEecCCCCCCCCCC------HHHHHHHHHHcCCeE
Q 028303 79 --AAGALLVYDIT-RRETFNHLSSWLEDARQH----ANPNMSIMLVGNKCDLAHRRAVS------KEEGEQFAKENGLLF 145 (210)
Q Consensus 79 --~d~~i~V~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~ 145 (210)
+|++|+|+|++ ++.++..+..|+..+... ...+.|+++|+||+|+....... .+++..++...++.+
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSL 160 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 89999999999 888888888887777554 23579999999999997655433 345666666667789
Q ss_pred EEEecCCCCC
Q 028303 146 LEASARTAQN 155 (210)
Q Consensus 146 ~~~sa~~~~~ 155 (210)
+++|++++.+
T Consensus 161 ~~~Sa~~~~~ 170 (218)
T 1nrj_B 161 NEVERKINEE 170 (218)
T ss_dssp HC--------
T ss_pred cccccccccc
Confidence 9999998765
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=1.5e-23 Score=172.60 Aligned_cols=160 Identities=17% Similarity=0.127 Sum_probs=115.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCCc----------chhhhhhH
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----------ESFRSITR 73 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~ 73 (210)
..++|+++|++|+|||||+|+|++.... ....++.+.+.....+.+++. .+.+|||||+ +.+..+..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence 5689999999999999999999988753 222333344444455666665 4789999997 44554443
Q ss_pred -HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-H----cCCeEEE
Q 028303 74 -SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-E----NGLLFLE 147 (210)
Q Consensus 74 -~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~ 147 (210)
.+++.+|++++|+|++++.+..+. .|...+.. .+.|+++|+||+|+.+......++..+... . .++++++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 478899999999999998877665 45555543 378999999999997655544444433222 2 3678999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 028303 148 ASARTAQNVEEAFIKTAAKILQN 170 (210)
Q Consensus 148 ~sa~~~~~i~~~~~~l~~~~~~~ 170 (210)
+||++|.|++++|+.+.+.+...
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998877654
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=5.1e-23 Score=170.39 Aligned_cols=163 Identities=17% Similarity=0.132 Sum_probs=119.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCC----------cchhhhhh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSIT 72 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 72 (210)
+..++|+++|.+++|||||+++|.+.... ....++.+.+.....+..++. .+.+||||| ++.+....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 35689999999999999999999976532 222333344443444556664 688999999 67777665
Q ss_pred H-HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-----CCeEE
Q 028303 73 R-SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-----GLLFL 146 (210)
Q Consensus 73 ~-~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~ 146 (210)
. .+++.+|++++|+|++++..... ..|...+.. .+.|+++|+||+|+.+......+++.+.+... .++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 5 47899999999999998644222 334444433 37899999999999877777777777777664 57899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHh
Q 028303 147 EASARTAQNVEEAFIKTAAKILQNIQ 172 (210)
Q Consensus 147 ~~sa~~~~~i~~~~~~l~~~~~~~~~ 172 (210)
++||++|.|++++|+.|.+.+.....
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999987765543
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=1.8e-22 Score=162.31 Aligned_cols=163 Identities=18% Similarity=0.158 Sum_probs=119.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh---------hhhHHh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR---------SITRSY 75 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~ 75 (210)
..++|+++|++|+|||||+++|.+........+..+.......+... ...+.+|||||..... ......
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 45899999999999999999999876432222222333333333334 3568899999974321 112234
Q ss_pred hccccEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCC
Q 028303 76 YRGAAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA 153 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 153 (210)
...+|++++|+|++++. ++.....|+..+..... +.|+++|+||+|+..... .+++..++...+++++++||++|
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g 320 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALKG 320 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTTT
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCCC
Confidence 45789999999998876 66777788887766543 789999999999865332 24566677777889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 028303 154 QNVEEAFIKTAAKILQNIQ 172 (210)
Q Consensus 154 ~~i~~~~~~l~~~~~~~~~ 172 (210)
+|+++++++|.+.+.....
T Consensus 321 ~gi~~l~~~i~~~l~~~~~ 339 (357)
T 2e87_A 321 TGIDLVKEEIIKTLRPLAE 339 (357)
T ss_dssp BTHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh
Confidence 9999999999998866543
No 128
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=5.3e-23 Score=169.55 Aligned_cols=179 Identities=20% Similarity=0.162 Sum_probs=113.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcch---------hhhhhHHhh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---------FRSITRSYY 76 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 76 (210)
.+|+++|.+|+|||||+|+|++..... ...+..+.+.....+.+++. .+.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 479999999999999999999887542 33334444555556667765 478999999653 334567789
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHH-HHHHHHcCC-eEEEEecCCCC
Q 028303 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG-EQFAKENGL-LFLEASARTAQ 154 (210)
Q Consensus 77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~sa~~~~ 154 (210)
+.+|++++|+|+.++.+..+ .++..+... .+.|+++|+||+|+.+. . ..++ .+++ ..++ +++++||++|.
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~ 151 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNI 151 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTB
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCC
Confidence 99999999999987654332 122222222 26899999999997431 0 1223 3443 4565 68999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccc---cccccCCcccccCCCCCCC
Q 028303 155 NVEEAFIKTAAKILQNIQEGAL---DAVNDSGIKVGYGRGQGPS 195 (210)
Q Consensus 155 ~i~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 195 (210)
|+.++++.|.+.+.....+... .......+.+|.++.|||+
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKST 195 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKST 195 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHH
T ss_pred CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHH
Confidence 9999999998877542111001 1111235677777766553
No 129
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=6.8e-23 Score=169.67 Aligned_cols=156 Identities=19% Similarity=0.132 Sum_probs=98.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhh--------HHhh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSIT--------RSYY 76 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~ 76 (210)
.++|+|+|++|+|||||+|+|++.... ....++.+.+.....+.+++ +.+.+|||||...+...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 488999999999999999999987543 22333335555555566666 468899999987665433 3367
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 028303 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (210)
Q Consensus 77 ~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 156 (210)
+.+|++++|+|++++.++..+..+...+.... +.|+++|+||+|+...... ....+......+++++||+++.|+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCH
Confidence 89999999999999877654433333333322 6899999999999764432 223343332468999999999999
Q ss_pred HHHHHHHHHHHH
Q 028303 157 EEAFIKTAAKIL 168 (210)
Q Consensus 157 ~~~~~~l~~~~~ 168 (210)
++++++|.+.+.
T Consensus 386 ~eL~~~i~~~~~ 397 (476)
T 3gee_A 386 DTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988775
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=5e-23 Score=161.62 Aligned_cols=154 Identities=21% Similarity=0.157 Sum_probs=106.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCceeEEEEEEEEECCEEEEEEEEecCCcch--------hhhhhHHh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSY 75 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 75 (210)
...+|+|+|.+|+|||||+|+|++..+..... +..+.......+..+ ..++.+|||||... +......+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 35689999999999999999999988764322 221222222222233 46789999999765 45566778
Q ss_pred hccccEEEEEEECCChhhHHHHHHHH-HHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCeEEEEecCC
Q 028303 76 YRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN--GLLFLEASART 152 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~ 152 (210)
++.+|++++|+|++++.+.. ..|+ ..+... ..+.|+++|+||+|+.+... +....+..+ ..+++++||++
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALD 156 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTC
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCC
Confidence 89999999999999865433 2343 344332 23689999999999864322 022233322 35689999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028303 153 AQNVEEAFIKTAAKI 167 (210)
Q Consensus 153 ~~~i~~~~~~l~~~~ 167 (210)
+.|++++++.|.+.+
T Consensus 157 g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 157 ERQVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999987654
No 131
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.88 E-value=4.6e-23 Score=164.68 Aligned_cols=119 Identities=18% Similarity=0.254 Sum_probs=99.2
Q ss_pred EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCC----------hhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCC
Q 028303 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHA-NPNMSIMLVGNKCD 122 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 122 (210)
.+.+.+||++|++.++..|..++++++++|||||+++ ..++.+...|+..+.... ..+.|+|+++||.|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 5789999999999999999999999999999999999 456888888888876542 25799999999999
Q ss_pred CCCCC---------------CCCHHHHHHHHH-----------HcCCeEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028303 123 LAHRR---------------AVSKEEGEQFAK-----------ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172 (210)
Q Consensus 123 ~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 172 (210)
+.++. .++.+++..++. ..++.++++||+++.|+.++|+++.+.+.....
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l 347 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL 347 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence 85322 356788888886 346779999999999999999999998876543
No 132
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=1.5e-21 Score=159.43 Aligned_cols=161 Identities=19% Similarity=0.175 Sum_probs=105.3
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCC--CceeEEEEEEEEE-------------C--C----EEEE
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDL--TIGVEFGARMVTI-------------D--G----RPIK 56 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~ 56 (210)
|.....++|+++|+.++|||||+++|++.. +..+..+ |....+....+.. + + ....
T Consensus 3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 82 (408)
T 1s0u_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR 82 (408)
T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence 345677999999999999999999999543 2233333 3333333333221 1 1 1368
Q ss_pred EEEEecCCcchhhhhhHHhhccccEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CC
Q 028303 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VS 130 (210)
Q Consensus 57 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~ 130 (210)
+.+|||||++.|...+...+..+|++|+|+|++++ .+.+.+. .+.... ..|+++++||+|+.+... ..
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l~--~~~iivv~NK~Dl~~~~~~~~~ 156 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEILG--IDKIIIVQNKIDLVDEKQAEEN 156 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHTT--CCCEEEEEECTTSSCTTTTTTH
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHcC--CCeEEEEEEccCCCCHHHHHHH
Confidence 99999999999988888888889999999999964 3333332 222221 248999999999976433 23
Q ss_pred HHHHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 131 KEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 131 ~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
.+++.+++.. .+++++++||+++.|++++++.|.+.+
T Consensus 157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 4566666664 357899999999999999999987654
No 133
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=1e-22 Score=162.17 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=115.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch----hhhhhHHhhc---cc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSITRSYYR---GA 79 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~---~~ 79 (210)
.+|+|+|.+++|||||+++|++........+..+.......+.+++ ...+.+|||||..+ +..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 4689999999999999999998764322222223333333344543 24688999999643 3334445544 59
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CeEEEEecCC
Q 028303 80 AGALLVYDITR---RETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASART 152 (210)
Q Consensus 80 d~~i~V~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~ 152 (210)
|++|+|+|+++ ..++..+..|+..+..+.. .+.|+++|+||+|+.... +....+..... .+++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7788888888888877542 478999999999986422 34556666655 6799999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 028303 153 AQNVEEAFIKTAAKIL 168 (210)
Q Consensus 153 ~~~i~~~~~~l~~~~~ 168 (210)
+.|++++++.|.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 314 REGLRELLFEVANQLE 329 (342)
T ss_dssp SSTTHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999988764
No 134
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.88 E-value=6.3e-21 Score=155.57 Aligned_cols=163 Identities=15% Similarity=0.120 Sum_probs=114.7
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEE-------EE---------EE---CCEEEEEEEEec
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR-------MV---------TI---DGRPIKLQIWDT 62 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~i~D~ 62 (210)
...+.++|+++|++++|||||+++|++.......... ..+.... .+ .. ......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 3467799999999999999999999975433211100 0000000 00 00 122368999999
Q ss_pred CCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHH
Q 028303 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKE 140 (210)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~ 140 (210)
||++.+...+...+..+|++++|+|++++.+......++..+.... ..|+++++||+|+.+.... ..+++.+++..
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999776666777776665543 2589999999998653211 11223333322
Q ss_pred c---CCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 141 N---GLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 141 ~---~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
. +++++++||+++.|++++++.|.+.+
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 2 57899999999999999999988754
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=1.2e-23 Score=173.14 Aligned_cols=178 Identities=17% Similarity=0.100 Sum_probs=110.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc--------hhhhhhHHhhcc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE--------SFRSITRSYYRG 78 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 78 (210)
++|+++|.+|+|||||+|+|++..+... ..+.+.+.......+......+.+|||||.+ .+...+..+++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 6899999999999999999998766432 2233444433334444444578999999985 566677888999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCCCCHH
Q 028303 79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVE 157 (210)
Q Consensus 79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 157 (210)
+|++|+|+|+.++.+..+ .++..+.. ..+.|+++|+||+|+.+... ++.+++ ..++ +++++||++|.|+.
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~ 153 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLG 153 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence 999999999998766443 23333322 24789999999999864321 111222 3344 68999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCcccccCCCCCCC
Q 028303 158 EAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPS 195 (210)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (210)
++++.+.+.+... ++...+....+.+.+|..+.||++
T Consensus 154 ~L~~~i~~~l~~~-~~~~~~~~~~ki~lvG~~nvGKSS 190 (436)
T 2hjg_A 154 DLLDAVAEHFKNI-PETKYNEEVIQFCLIGRPNVGKSS 190 (436)
T ss_dssp HHHHHHHHTGGGC-CSSCCCTTCEEEEEECSTTSSHHH
T ss_pred HHHHHHHHhcCcc-ccccccccCcEEEEEcCCCCCHHH
Confidence 9999988776421 111011112236677887766654
No 136
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.88 E-value=1.7e-21 Score=164.76 Aligned_cols=162 Identities=23% Similarity=0.258 Sum_probs=114.2
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCC--CCC-----CCCC------CceeEEE--EEEEEE---CCEEEEEEEEec
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKR--FQP-----VHDL------TIGVEFG--ARMVTI---DGRPIKLQIWDT 62 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~-----~~~~------~~~~~~~--~~~~~~---~~~~~~~~i~D~ 62 (210)
|..++..+|+++|+.++|||||+++|+... ... .... ..+.+.. ...+.+ ++..+.++||||
T Consensus 1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT 80 (600)
T 2ywe_A 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT 80 (600)
T ss_dssp CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence 555678899999999999999999997531 110 0000 1111211 111212 455688999999
Q ss_pred CCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC
Q 028303 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG 142 (210)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 142 (210)
||+..|...+...++.+|++|+|+|++++.+......|..... .++|+++|+||+|+.... ..+...++....+
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg 154 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLG 154 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSC
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhC
Confidence 9999999999999999999999999999877777766665443 378999999999997533 1233444555556
Q ss_pred C---eEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 143 L---LFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 143 ~---~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
+ +++++||++|.|++++|+.|.+.+.
T Consensus 155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 155 LDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp CCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 5 3899999999999999998877653
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=5.9e-22 Score=164.20 Aligned_cols=154 Identities=21% Similarity=0.174 Sum_probs=114.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc-hhhh--------hhHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-SFRS--------ITRSY 75 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~ 75 (210)
.++|+|+|.+|+|||||+|+|++.... ....++.+.+.....+.+++. .+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 389999999999999999999987643 223333355555556667764 57899999987 5432 24567
Q ss_pred hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 155 (210)
++.+|++++|+|++++.++.+.. ++..+ .+.|+++|+||+|+.+. ...+++..++. .+.+++++||+++.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 88999999999999887765543 22222 26899999999999653 34455555432 446899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028303 156 VEEAFIKTAAKILQN 170 (210)
Q Consensus 156 i~~~~~~l~~~~~~~ 170 (210)
+++++++|.+.+...
T Consensus 392 i~eL~~~l~~~~~~~ 406 (482)
T 1xzp_A 392 LEKLEESIYRETQEI 406 (482)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999977643
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.87 E-value=2.6e-23 Score=169.65 Aligned_cols=156 Identities=14% Similarity=0.133 Sum_probs=113.0
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh-------hHHh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-------TRSY 75 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~ 75 (210)
...++|+|+|+.++|||||+++|++..+.. ...+..+.+.....+.+.+. ..+.+|||||++.+..+ ...+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 356899999999999999999999887632 22333344444555555543 26889999998876543 4567
Q ss_pred hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 155 (210)
++.+|++|+|+|+.... ....|+..+... +.|+++|+||+|+...... +...++...++++++++||+++.|
T Consensus 111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~g 182 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKG 182 (423)
T ss_dssp HTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred HhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCC
Confidence 88999999999994332 345566666554 7899999999999765543 556666667788999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028303 156 VEEAFIKTAAKIL 168 (210)
Q Consensus 156 i~~~~~~l~~~~~ 168 (210)
++++|+.|.+.+.
T Consensus 183 I~eL~~~L~~~l~ 195 (423)
T 3qq5_A 183 FDDIGKTISEILP 195 (423)
T ss_dssp TTTHHHHHHHHSC
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988774
No 139
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.87 E-value=2e-21 Score=164.49 Aligned_cols=159 Identities=21% Similarity=0.237 Sum_probs=110.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCC--C-----CCCC------CCceeEEEEEE--EEE---CCEEEEEEEEecCCc
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF--Q-----PVHD------LTIGVEFGARM--VTI---DGRPIKLQIWDTAGQ 65 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-----~~~~------~~~~~~~~~~~--~~~---~~~~~~~~i~D~~G~ 65 (210)
++..+|+++|+.++|||||+++|+.... . .... ...+.+..... +.+ ++..+.++||||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 3468999999999999999999986321 0 0000 11223332222 222 455689999999999
Q ss_pred chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCe-
Q 028303 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL- 144 (210)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~- 144 (210)
..|...+...++.+|++|+|+|++++.+......|..... .++|+++|+||+|+.... ..+...++....++.
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~ 155 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDA 155 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999877666666655443 278999999999997533 223344555555653
Q ss_pred --EEEEecCCCCCHHHHHHHHHHHHH
Q 028303 145 --FLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 145 --~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
++++||++|.|++++++.|.+.+.
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCC
Confidence 899999999999999998877653
No 140
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=3.1e-21 Score=146.82 Aligned_cols=161 Identities=14% Similarity=0.122 Sum_probs=104.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CceeEEEEEEEEECCEEEEEEEEecCCc-----------chhhh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMVTIDGRPIKLQIWDTAGQ-----------ESFRS 70 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~~~ 70 (210)
...++|+|+|++|+|||||+++|++..+.....+ +.+.........+++ ..+.+|||||. +.+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 4569999999999999999999999887655544 334444444455665 35789999993 34444
Q ss_pred hhHHhhccccEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC------HHHHHHHHHHcC
Q 028303 71 ITRSYYRGAAGALLVYDITRRET--FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS------KEEGEQFAKENG 142 (210)
Q Consensus 71 ~~~~~~~~~d~~i~V~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~ 142 (210)
.+..+++.+|++|+|+|+++... ...+..+...+... ...|+++|+||+|+.....+. .+.++.++...+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 55566678899999999876433 12222222222111 135999999999986543332 235677778888
Q ss_pred CeEEEEecCCC-----CCHHHHHHHHHHHHH
Q 028303 143 LLFLEASARTA-----QNVEEAFIKTAAKIL 168 (210)
Q Consensus 143 ~~~~~~sa~~~-----~~i~~~~~~l~~~~~ 168 (210)
..++.++...+ .++.++|+.+.+.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 88888877644 577888877766553
No 141
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=1.8e-21 Score=159.14 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=110.5
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCC--CceeEEEEEEEEE-------------C--C----EEEEEE
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDL--TIGVEFGARMVTI-------------D--G----RPIKLQ 58 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 58 (210)
....++|+++|+.++|||||+++|++.. +..+... |....+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999999643 2222223 3333333332211 1 1 136899
Q ss_pred EEecCCcchhhhhhHHhhccccEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CCHH
Q 028303 59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKE 132 (210)
Q Consensus 59 i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~ 132 (210)
+|||||++.|.......+..+|++|+|+|++++ .+.+.+. .+.... ..|+++++||+|+.+... ...+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHHHHHHH
Confidence 999999999988888888899999999999964 3333332 222221 257999999999865321 1233
Q ss_pred HHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 028303 133 EGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 133 ~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
++.+++.. ..++++++||+++.|++++++.|.+.+
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 45555543 357899999999999999999887654
No 142
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.87 E-value=2.4e-21 Score=161.06 Aligned_cols=155 Identities=18% Similarity=0.156 Sum_probs=110.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhc
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR 77 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 77 (210)
..++|+++|+.++|||||+++|++.. ...+.....+.+.....+.+++ ..+.+|||||++.|...+...+.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence 46899999999999999999999876 2222222333333333344454 57899999999999999999999
Q ss_pred cccEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHHc----CCeEEEE
Q 028303 78 GAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKEN----GLLFLEA 148 (210)
Q Consensus 78 ~~d~~i~V~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~~~~ 148 (210)
.+|++|+|+|++++ .+.+.+ ..+.. .++|+++++||+|+.+... ...+++.+++... .++++++
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred hCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 99999999999983 333332 22222 2688999999999865211 1223455566555 5789999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 028303 149 SARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 149 sa~~~~~i~~~~~~l~~~~~ 168 (210)
||+++.|++++++.|.+.+.
T Consensus 169 SA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 169 SAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999988775
No 143
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.87 E-value=2.4e-22 Score=158.46 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=96.9
Q ss_pred EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECC----------ChhhHHHHHHHHHHHHhhcC-CCCeEEEEEecCC
Q 028303 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCD 122 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D 122 (210)
.+.+++||++|++.++..|..+++.++++|||+|++ +..++.+...|+..+..... .+.|+++++||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 478999999999999999999999999999999665 56667777777777754432 5799999999999
Q ss_pred CCCCC----------------CCCHHHHHHHHH----------HcCCeEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303 123 LAHRR----------------AVSKEEGEQFAK----------ENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (210)
Q Consensus 123 ~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 171 (210)
+.+++ ..+.+++.+++. ..++.++++||+++.||+.+|..+.+.+++..
T Consensus 246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 85432 467788887753 34567889999999999999999999988754
No 144
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.87 E-value=1.1e-21 Score=156.72 Aligned_cols=121 Identities=16% Similarity=0.209 Sum_probs=95.3
Q ss_pred EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECC----------ChhhHHHHHHHHHHHHhhc-CCCCeEEEEEecC
Q 028303 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHA-NPNMSIMLVGNKC 121 (210)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 121 (210)
..+.+.+|||+|++.++.+|..+++.++++|||||++ +..++.+...|+..+.... ..++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5789999999999999999999999999999999998 7788888888888876543 2579999999999
Q ss_pred CCCCCCC--C-------------------CHHHHHHHHHH----------------cCCeEEEEecCCCCCHHHHHHHHH
Q 028303 122 DLAHRRA--V-------------------SKEEGEQFAKE----------------NGLLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 122 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
|+.+++. . +.+++..++.. ..+.++++||+++.|++++|+.+.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843211 1 14566666443 123468999999999999999999
Q ss_pred HHHHHHHhh
Q 028303 165 AKILQNIQE 173 (210)
Q Consensus 165 ~~~~~~~~~ 173 (210)
+.+.....+
T Consensus 341 ~~I~~~~l~ 349 (354)
T 2xtz_A 341 ETLRRRNLL 349 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988766543
No 145
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=1.1e-21 Score=163.41 Aligned_cols=154 Identities=15% Similarity=0.107 Sum_probs=99.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCceeEEEEEEEEECCEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMVTIDGRP 54 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 54 (210)
...++|+++|++++|||||+++|++....-. .....+.+.......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 3569999999999999999999976511000 00011222222233344445
Q ss_pred EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHH------HHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH------LSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~------~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (210)
..+.||||||++.|...+..++..+|++|+|+|++++.+... .......+... ...|+|+|+||+|+.+...
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence 678999999999999999999999999999999998754322 22222222222 1246999999999976433
Q ss_pred CCHHHHHH----HHHHc-----CCeEEEEecCCCCCHHHH
Q 028303 129 VSKEEGEQ----FAKEN-----GLLFLEASARTAQNVEEA 159 (210)
Q Consensus 129 ~~~~~~~~----~~~~~-----~~~~~~~sa~~~~~i~~~ 159 (210)
...+++.. ++... .++++++||++|.|++++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 33333333 33332 457999999999999853
No 146
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.86 E-value=1.4e-20 Score=151.10 Aligned_cols=160 Identities=24% Similarity=0.141 Sum_probs=107.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc---------hhhhhhHHhhcc
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE---------SFRSITRSYYRG 78 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~ 78 (210)
.|+++|++|+|||||+++|++........+..+.+.....+.+++. .+.+|||+|.- .+... ...+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHH-HHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHH-HHHHHh
Confidence 3999999999999999999988764333333344455556777773 57899999962 23332 235788
Q ss_pred ccEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC-CHHHHHHHHHHc---CCeEEEEecCC
Q 028303 79 AAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKEN---GLLFLEASART 152 (210)
Q Consensus 79 ~d~~i~V~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~sa~~ 152 (210)
+|++++|+|++++. ....+..|...+......+.|+++|+||+|+...... ..+.+..++... ..+++++|+++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999999876 5555555655555544457899999999998653210 011232333444 23689999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028303 153 AQNVEEAFIKTAAKILQN 170 (210)
Q Consensus 153 ~~~i~~~~~~l~~~~~~~ 170 (210)
+.|++++++.|.+.+...
T Consensus 338 g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQL 355 (364)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhccc
Confidence 999999999998876543
No 147
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=6.8e-22 Score=153.45 Aligned_cols=160 Identities=16% Similarity=0.218 Sum_probs=92.1
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC--------CCCceeEEEEEEEEECCEEEEEEEEecCCcc-------h
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-------S 67 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~ 67 (210)
....++|+|+|.+|+|||||+|+|++....... .++.+.+.....+..++..+.+.+|||||.. .
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 345799999999999999999999877654432 3455555555555556666789999999973 2
Q ss_pred hhhhh-------HHhhcc-------------ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303 68 FRSIT-------RSYYRG-------------AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (210)
Q Consensus 68 ~~~~~-------~~~~~~-------------~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 127 (210)
+..+. ..++.. +|+++++++.+.......-..++..+.. ++|+|+|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 33332 333333 7789999977652211111223333322 68999999999985422
Q ss_pred CC--CHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303 128 AV--SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 128 ~~--~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
.. ..+.+.+.+...+++++++|+++++++.++++.|.+.
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 21 1123455566678899999999999999988887653
No 148
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=8.2e-21 Score=156.27 Aligned_cols=153 Identities=23% Similarity=0.183 Sum_probs=103.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCCceeEEEEEEEEECC
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF-------------------------------QPVHDLTIGVEFGARMVTIDG 52 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 52 (210)
...++|+++|++++|||||+++|+.... ..+.....+.+.... .+..
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~--~~~~ 92 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRA--YFET 92 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEE--EEec
Confidence 3568999999999999999999965421 111112233333333 3333
Q ss_pred EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhH------HHHHHHHHHHHhhcCCCCe-EEEEEecCCCCC
Q 028303 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF------NHLSSWLEDARQHANPNMS-IMLVGNKCDLAH 125 (210)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 125 (210)
....+.||||||++.|...+...+..+|++|+|+|++++... ......+..+.. .++| +|+++||+|+..
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCcc
Confidence 445799999999999999999999999999999999986421 112222222222 2567 899999999853
Q ss_pred CC------CCCHHHHHHHHHHcC------CeEEEEecCCCCCHHHHHH
Q 028303 126 RR------AVSKEEGEQFAKENG------LLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 126 ~~------~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~~ 161 (210)
.. ....+++..++...+ ++++++||++|.|+.++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 21 111233444554443 5799999999999999765
No 149
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.86 E-value=5.5e-21 Score=146.17 Aligned_cols=164 Identities=16% Similarity=0.091 Sum_probs=103.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc--eeEEEEEEEEECCEEEEEEEEecCCc--------chhhhhhH
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI--GVEFGARMVTIDGRPIKLQIWDTAGQ--------ESFRSITR 73 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~ 73 (210)
...++|+|+|.+|+|||||+|+|++.........+. +..........++ ..+.+|||||. +.+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 457999999999999999999999988765444332 2222333344454 46889999995 33333333
Q ss_pred Hh----hccccEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC------CHHHHHHHHHHcC
Q 028303 74 SY----YRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV------SKEEGEQFAKENG 142 (210)
Q Consensus 74 ~~----~~~~d~~i~V~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~ 142 (210)
.+ .+.+|++++|+|+++.... ..+..++..+......+.|+|+++||.|+.+.... ..+..+.+....+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 33 3899999999999863221 12223333332221136799999999999653211 1134566777777
Q ss_pred CeEEEEecCC-----CCCHHHHHHHHHHHHHH
Q 028303 143 LLFLEASART-----AQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 143 ~~~~~~sa~~-----~~~i~~~~~~l~~~~~~ 169 (210)
..++.++... +.++.++++.|.+.+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 7787777665 46888888887776654
No 150
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.85 E-value=1.5e-21 Score=156.46 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=92.3
Q ss_pred EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCC----------hhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCC
Q 028303 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHA-NPNMSIMLVGNKCD 122 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 122 (210)
.+.+.+|||+|++.+...|..+++.++++|||+|+++ ..++.+...|+..+.... ..+.|+|+++||.|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 4789999999999999999999999999999999999 678888888888876542 25799999999999
Q ss_pred CCCCC----------------CCCHHHHHHHHH-----------HcCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 028303 123 LAHRR----------------AVSKEEGEQFAK-----------ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173 (210)
Q Consensus 123 ~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 173 (210)
+.++. ..+.+++..++. ...+.++++||+++.|++++|+++.+.+.+...+
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l~ 357 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK 357 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHHH
Confidence 85321 256777877762 3357789999999999999999999988776543
No 151
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=3.4e-20 Score=152.78 Aligned_cols=160 Identities=21% Similarity=0.118 Sum_probs=107.1
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhh------------
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI------------ 71 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------------ 71 (210)
..++|+|+|++|+|||||+++|.+..... ...++.+.+.....+.+++. .+.+|||+|.......
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 45899999999999999999999876421 22222234444455667775 4679999997433221
Q ss_pred hHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHH-H----HcCCeEE
Q 028303 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-K----ENGLLFL 146 (210)
Q Consensus 72 ~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~~~~ 146 (210)
...+++.+|++++|+|++++.+..+. .+...+.. .+.|+++++||+|+.+......++..+.. . ...++++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 13467789999999999986655442 22222222 37899999999999765444444443222 2 2357899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHH
Q 028303 147 EASARTAQNVEEAFIKTAAKILQN 170 (210)
Q Consensus 147 ~~sa~~~~~i~~~~~~l~~~~~~~ 170 (210)
++||++|.|++++|+.+.+.+...
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999998876553
No 152
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.85 E-value=1.3e-21 Score=161.45 Aligned_cols=153 Identities=21% Similarity=0.187 Sum_probs=101.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhh--------HHh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSIT--------RSY 75 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 75 (210)
..++|+++|++|+|||||+|+|.+..+.. ...++.+.+.....+.+++. .+.+|||||...+...+ ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence 35799999999999999999999875432 22233344444444566664 57899999976554332 235
Q ss_pred hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 028303 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 155 (210)
++.+|++++|+|++++.+... ..|+..+. ..|+++|+||+|+....... ....+. ...+++++||+++.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 788999999999998766444 34444432 36999999999997644332 111111 356799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028303 156 VEEAFIKTAAKILQ 169 (210)
Q Consensus 156 i~~~~~~l~~~~~~ 169 (210)
++++++.|.+.+..
T Consensus 371 i~eL~~~i~~~~~~ 384 (462)
T 3geh_A 371 IDSLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887653
No 153
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.85 E-value=1.8e-21 Score=152.90 Aligned_cols=156 Identities=19% Similarity=0.126 Sum_probs=103.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCceeEEEEEEEEECCEEEEEEEEecCCcc-h--------hhhhhHH
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-S--------FRSITRS 74 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~--------~~~~~~~ 74 (210)
...+|+++|++|+|||||+++|++..+.... .+..+.......+..+ ...+.+|||||.. . +......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 3468999999999999999999998754321 1111111122223333 3578899999987 2 2233455
Q ss_pred hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-eEEEEecCCC
Q 028303 75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTA 153 (210)
Q Consensus 75 ~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~ 153 (210)
+++.+|++++|+|+++ -+ ....++..... ..+.|+++++||+|+........+.+..+....+. .++++||+++
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCCCEEEEEEEEETTC-CC--HHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 6788999999999977 22 22223322222 23689999999999865222222334445544565 6899999999
Q ss_pred CCHHHHHHHHHHHH
Q 028303 154 QNVEEAFIKTAAKI 167 (210)
Q Consensus 154 ~~i~~~~~~l~~~~ 167 (210)
.|++++++.|.+.+
T Consensus 160 ~~v~~l~~~i~~~l 173 (301)
T 1ega_A 160 LNVDTIAAIVRKHL 173 (301)
T ss_dssp TTHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999887643
No 154
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.85 E-value=2.9e-22 Score=165.85 Aligned_cols=180 Identities=16% Similarity=0.055 Sum_probs=112.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCC--------cchhhhhhHHhhc
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG--------QESFRSITRSYYR 77 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~~~ 77 (210)
..+|+|+|.+|+|||||+|+|++..+... ..+.+.+.......+......+.+||||| ++.+...+..+++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 47899999999999999999998766432 22334455444455555556789999999 7777788889999
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157 (210)
Q Consensus 78 ~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 157 (210)
.+|++|+|+|..++.+.. ..++..+... .+.|+++|+||+|+.+.. ....++........+++||+++.|+.
T Consensus 102 ~ad~il~VvD~~~~~~~~--d~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~~lg~~~~~~iSA~~g~gv~ 173 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTAA--DEEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFYSLGFGEPYPISGTHGLGLG 173 (456)
T ss_dssp HCSEEEEEEESSSCSCHH--HHHHHHHHTT--CCSCEEEEEECC-------------CCSGGGSSSSEEECCTTTCTTHH
T ss_pred hCCEEEEEEeCCCCCChH--HHHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHHHcCCCceEEeecccccchH
Confidence 999999999988754322 2333333322 478999999999985422 11122222212246799999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCcccccCCCCCCC
Q 028303 158 EAFIKTAAKILQNIQEGALDAVNDSGIKVGYGRGQGPS 195 (210)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (210)
++++.+.+.+... ..........+.+.+|....|+++
T Consensus 174 ~L~~~i~~~l~~~-~~~~~~~~~~ki~ivG~~~vGKSs 210 (456)
T 4dcu_A 174 DLLDAVAEHFKNI-PETKYNEEVIQFCLIGRPNVGKSS 210 (456)
T ss_dssp HHHHHHHTTGGGS-CSSCCCTTCEEEEEECSTTSSHHH
T ss_pred HHHHHHHhhcccc-cccccccccceeEEecCCCCCHHH
Confidence 9999987765321 111111112225667777766553
No 155
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.85 E-value=5e-21 Score=147.37 Aligned_cols=161 Identities=15% Similarity=0.107 Sum_probs=104.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCC-ceeEEEEEEEEECCEEEEEEEEecCCcchhhh-----------h
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLT-IGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-----------I 71 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~ 71 (210)
..++|+|+|++|+|||||+++|++..... ...++ .+.........+++ ..+.+|||||...+.. .
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999887433 33332 33344444455555 4588999999765422 2
Q ss_pred hHHhhccccEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCeEEEEEe-cCCCCCCCCCCH-------HHHHHHHHHcC
Q 028303 72 TRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGN-KCDLAHRRAVSK-------EEGEQFAKENG 142 (210)
Q Consensus 72 ~~~~~~~~d~~i~V~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~~~ 142 (210)
...+++.+|++++|+|+++.... ..+..++..+.... ...|+++++| |+|+.... ... +++..++...+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhC
Confidence 23467899999999999862221 22223333322111 1356777776 99997432 111 22444555554
Q ss_pred Ce---E--EEEecCCCCCHHHHHHHHHHHHHH
Q 028303 143 LL---F--LEASARTAQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 143 ~~---~--~~~sa~~~~~i~~~~~~l~~~~~~ 169 (210)
.. + +++||+++.|++++|+.|.+.+..
T Consensus 177 ~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 177 GRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 33 2 688999999999999999988765
No 156
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.85 E-value=3.3e-21 Score=152.50 Aligned_cols=120 Identities=17% Similarity=0.233 Sum_probs=96.8
Q ss_pred ECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECC----------ChhhHHHHHHHHHHHHhhcC-CCCeEEEEE
Q 028303 50 IDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHAN-PNMSIMLVG 118 (210)
Q Consensus 50 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~ 118 (210)
+....+.+++||++|++.++.+|..+++.++++|||+|++ +..++.+...|+..+..... .++|+++++
T Consensus 156 ~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~ 235 (340)
T 4fid_A 156 FVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFL 235 (340)
T ss_dssp EESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEE
T ss_pred EEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEE
Confidence 3334578999999999999999999999999999999998 67778888888887765432 579999999
Q ss_pred ecCCCCCCC---------------CCCHHHHHHHHHH-c--------------------------CCeEEEEecCCCCCH
Q 028303 119 NKCDLAHRR---------------AVSKEEGEQFAKE-N--------------------------GLLFLEASARTAQNV 156 (210)
Q Consensus 119 nK~D~~~~~---------------~~~~~~~~~~~~~-~--------------------------~~~~~~~sa~~~~~i 156 (210)
||+|+.+++ ..+.+++.+++.. . .+.++++||++..++
T Consensus 236 NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv 315 (340)
T 4fid_A 236 NKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI 315 (340)
T ss_dssp ECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred ECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence 999984311 1245666555443 1 366889999999999
Q ss_pred HHHHHHHHHHHHH
Q 028303 157 EEAFIKTAAKILQ 169 (210)
Q Consensus 157 ~~~~~~l~~~~~~ 169 (210)
+.+|..+.+.+++
T Consensus 316 ~~vF~~v~~~Il~ 328 (340)
T 4fid_A 316 KRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999988
No 157
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.84 E-value=6e-22 Score=159.18 Aligned_cols=167 Identities=16% Similarity=0.276 Sum_probs=93.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCC-CCC--------CCceeEEEEEEEEECCEEEEEEEEecCCc-------ch
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHD--------LTIGVEFGARMVTIDGRPIKLQIWDTAGQ-------ES 67 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 67 (210)
...++|+|+|++|+|||||+++|++..... .+. ++.+.......+..++..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 346899999999999999999987754332 221 33333333333444566778999999998 55
Q ss_pred hhhhhH-------Hhhccc-------------cEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCC
Q 028303 68 FRSITR-------SYYRGA-------------AGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR 126 (210)
Q Consensus 68 ~~~~~~-------~~~~~~-------------d~~i~V~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (210)
+..++. .+++.+ |+++|+++.. ..++..+. .++..+ ..++|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 666655 555443 3455555532 23333333 233222 357899999999998754
Q ss_pred CCCCH--HHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhhccc
Q 028303 127 RAVSK--EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 176 (210)
Q Consensus 127 ~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~ 176 (210)
..+.. +++..++...+++++++||+++.+ ++.|..+.+.+.+..|....
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~vv 240 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFSVV 240 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCEEC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCCEe
Confidence 43332 456666667789999999999999 89999999988877765443
No 158
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1e-20 Score=139.05 Aligned_cols=115 Identities=22% Similarity=0.325 Sum_probs=87.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhcc--
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG-- 78 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-- 78 (210)
...++|+|+|++|+|||||+++|.+..+... ..++.+ .+.....+.+|||||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 4568999999999999999999999876441 111111 12234568899999999888877777766
Q ss_pred --ccEEEEEEECC-ChhhHHHHHHHHHHHHhhc----CCCCeEEEEEecCCCCCCC
Q 028303 79 --AAGALLVYDIT-RRETFNHLSSWLEDARQHA----NPNMSIMLVGNKCDLAHRR 127 (210)
Q Consensus 79 --~d~~i~V~d~~-~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~ 127 (210)
+|++|+|+|++ +..++..+..|+..+.... ..+.|+++|+||+|+.+..
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 8889988888887775442 3579999999999997644
No 159
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.84 E-value=4.5e-23 Score=172.30 Aligned_cols=159 Identities=21% Similarity=0.235 Sum_probs=113.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+++|++++|||||+++|.+..+.....++.+.++....+..++ ...+.||||||++.|...+..+++.+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 468899999999999999999998766555555544444433333322 2368899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC-HHHHHHH---HHHc--CCeEEEEecCCCCCHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-KEEGEQF---AKEN--GLLFLEASARTAQNVEE 158 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~sa~~~~~i~~ 158 (210)
|+|++++........ +..+. ..++|+++++||+|+.+..... ..+.... +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~e~-l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTVES-IQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHHHH-HHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHHHH-HHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 999998654433322 22332 2478999999999996532211 1222111 1111 35799999999999999
Q ss_pred HHHHHHHHHH
Q 028303 159 AFIKTAAKIL 168 (210)
Q Consensus 159 ~~~~l~~~~~ 168 (210)
+++.|...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999887654
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.84 E-value=2.4e-21 Score=158.15 Aligned_cols=148 Identities=18% Similarity=0.146 Sum_probs=103.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhC--------CCCCCC--C-----CCceeEEEEEEEEECCEEEEEEEEecCCcchh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDK--------RFQPVH--D-----LTIGVEFGARMVTIDGRPIKLQIWDTAGQESF 68 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~--------~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (210)
...++|+++|++++|||||+++|++. .+.... . ...+.+.......++.....+.+|||||++.|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45699999999999999999999873 111100 0 01223333333444444567899999999999
Q ss_pred hhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCC---CCHHHHHHHHHHcC--
Q 028303 69 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRA---VSKEEGEQFAKENG-- 142 (210)
Q Consensus 69 ~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~-- 142 (210)
...+...+..+|++|+|+|++++... ....++..+... ++| +++++||+|+.+... ...+++.+++...+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 99899999999999999999986543 334555554443 678 889999999974211 11234556666654
Q ss_pred ---CeEEEEecCCCCC
Q 028303 143 ---LLFLEASARTAQN 155 (210)
Q Consensus 143 ---~~~~~~sa~~~~~ 155 (210)
++++++||+++.|
T Consensus 165 ~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 165 GDEVPVIRGSALLALE 180 (405)
T ss_dssp TTTSCEEECCHHHHHH
T ss_pred ccCCCEEEccHHHhhh
Confidence 6799999999877
No 161
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.84 E-value=2.6e-21 Score=159.23 Aligned_cols=157 Identities=19% Similarity=0.240 Sum_probs=104.4
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhC--CCCCCC---------------------------CCCceeEEEEEEEEEC
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVH---------------------------DLTIGVEFGARMVTID 51 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~ 51 (210)
|.....++|+++|++++|||||+++|+.. .+.... ....+.+.......++
T Consensus 1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~ 80 (435)
T 1jny_A 1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE 80 (435)
T ss_dssp ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence 55667899999999999999999999864 222110 0001222222222344
Q ss_pred CEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHH-------HHHHHHhhcCCCC-eEEEEEecCCC
Q 028303 52 GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-------WLEDARQHANPNM-SIMLVGNKCDL 123 (210)
Q Consensus 52 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~-------~~~~~~~~~~~~~-p~ivv~nK~D~ 123 (210)
.....+.+|||||++.|...+..++..+|++|+|+|+++ .+++.... ++..+.. .+. |+++++||+|+
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~---~~~~~iivviNK~Dl 156 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNKMDL 156 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEECGGG
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH---cCCCeEEEEEEcccC
Confidence 445679999999999999999999999999999999998 55654332 2222222 244 68999999999
Q ss_pred CCCC------CCCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHHHH
Q 028303 124 AHRR------AVSKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 124 ~~~~------~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~~ 161 (210)
.+.. ....+++..++...+ ++++++||++|.|+.++++
T Consensus 157 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 157 TEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp SSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred CCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 6521 112345666776655 6799999999999986543
No 162
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.84 E-value=6.1e-21 Score=155.33 Aligned_cols=158 Identities=18% Similarity=0.136 Sum_probs=107.4
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCC-------CCCC-------CCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKR-------FQPV-------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (210)
..++|+++|++++|||||+++|++.. +... .....+.+.......++.....+.+|||||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998741 1100 000122333333344444456789999999999988
Q ss_pred hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCC---CCHHHHHHHHHHcC----
Q 028303 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRA---VSKEEGEQFAKENG---- 142 (210)
Q Consensus 71 ~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~---- 142 (210)
.+...+..+|++|+|+|++++...+.. .++..+.. .++| +++++||+|+.+... ...+++++++...+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 888999999999999999986433322 33333333 2678 689999999864211 11235666776655
Q ss_pred -CeEEEEecCCCCC----------HHHHHHHHHHH
Q 028303 143 -LLFLEASARTAQN----------VEEAFIKTAAK 166 (210)
Q Consensus 143 -~~~~~~sa~~~~~----------i~~~~~~l~~~ 166 (210)
++++++||+++.| +.++++.|.+.
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~ 192 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence 5899999999764 66666665543
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=7.4e-21 Score=153.15 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEE
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d 87 (210)
+|+++|++++|||||+++|+ ..+.+.......+......+.+|||||++.|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999998 11222222223344444579999999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEe-cCCCCCCCCCC--HHHHHHHHHHc---CCeEEE--EecCC---CCC
Q 028303 88 ITRRETFNHLSSWLEDARQHANPNMSI-MLVGN-KCDLAHRRAVS--KEEGEQFAKEN---GLLFLE--ASART---AQN 155 (210)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~--~~~~~~~~~~~---~~~~~~--~sa~~---~~~ 155 (210)
++. .......++..+... ++|. ++++| |+|+ +..... .+++++++... .+++++ +||++ +.|
T Consensus 93 -~~g-~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQG-LDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TTC-CCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CCC-CcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 543 344455555555443 5777 88999 9998 432211 13445555443 368999 99999 999
Q ss_pred HHHHHHHHHHHHHHH
Q 028303 156 VEEAFIKTAAKILQN 170 (210)
Q Consensus 156 i~~~~~~l~~~~~~~ 170 (210)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999998887654
No 164
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.83 E-value=1e-20 Score=158.56 Aligned_cols=115 Identities=20% Similarity=0.148 Sum_probs=82.1
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCC-----------------C-----CCCCceeEEEEEEEEECCEEEEEEEEec
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------V-----HDLTIGVEFGARMVTIDGRPIKLQIWDT 62 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 62 (210)
...+|+|+|++++|||||+++|+...... . .....+.......+.+. .+.+.||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEEC
Confidence 46899999999999999999996211100 0 00011112222223333 467899999
Q ss_pred CCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
||+..+...+..+++.+|++|+|+|++++........| ..+.. .++|+++|+||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 99999999999999999999999999987666555444 33332 3789999999999864
No 165
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.83 E-value=3.5e-20 Score=157.07 Aligned_cols=160 Identities=23% Similarity=0.198 Sum_probs=106.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEEC----------------CEEEEEEEEecCCcchh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID----------------GRPIKLQIWDTAGQESF 68 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~ 68 (210)
..++|+++|++++|||||+++|.+..+........+.+........+ .....+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45899999999999999999998765433221111111111111110 01125889999999999
Q ss_pred hhhhHHhhccccEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC------------HH-
Q 028303 69 RSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS------------KE- 132 (210)
Q Consensus 69 ~~~~~~~~~~~d~~i~V~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------------~~- 132 (210)
...+...++.+|++|+|+|+++ +.++..+. .+.. .++|+++++||+|+....... .+
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999888999999999999999 55544433 2222 378999999999996422110 01
Q ss_pred ----------HHHHHHHHcC---------------CeEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303 133 ----------EGEQFAKENG---------------LLFLEASARTAQNVEEAFIKTAAKILQNI 171 (210)
Q Consensus 133 ----------~~~~~~~~~~---------------~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 171 (210)
+....+...+ ++++++||++|.|+++++++|...+....
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 1111222222 37999999999999999999988776443
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.83 E-value=4.8e-20 Score=151.65 Aligned_cols=154 Identities=19% Similarity=0.155 Sum_probs=104.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCC---CCC---------CCCC-------------------ceeEEEEEEEEECC
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF---QPV---------HDLT-------------------IGVEFGARMVTIDG 52 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~---------~~~~-------------------~~~~~~~~~~~~~~ 52 (210)
...++|+++|++++|||||+++|++... ... ...+ .+.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3568999999999999999999986541 100 0011 01111112222333
Q ss_pred EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-eEEEEEecCCCCCCCCC--
Q 028303 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-SIMLVGNKCDLAHRRAV-- 129 (210)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~~-- 129 (210)
....+.+|||||++.|...+..++..+|++|+|+|++++... ....++..+... +. |+++|+||+|+.+....
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence 345789999999999999888899999999999999986432 233344433332 34 68999999999753211
Q ss_pred --CHHHHHHHHHHcC-----CeEEEEecCCCCCHHHHHH
Q 028303 130 --SKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI 161 (210)
Q Consensus 130 --~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~~ 161 (210)
..+++..++...+ ++++++||++|.|++++++
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 1244556666666 6799999999999988543
No 167
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.83 E-value=1.2e-19 Score=146.68 Aligned_cols=119 Identities=13% Similarity=0.162 Sum_probs=96.9
Q ss_pred EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCC----------hhhHHHHHHHHHHHHhhc-CCCCeEEEEEecCCC
Q 028303 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDL 123 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~ 123 (210)
+.+.+|||+|++.+...|..+++.++++|||||+++ ..++.++..|+..+.... ..++|+++|+||+|+
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL 296 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence 789999999999999999999999999999999999 888999999998887653 367999999999998
Q ss_pred CCCCC---C---------------------------CHHHHHHHH-----HH--------cCCeEEEEecCCCCCHHHHH
Q 028303 124 AHRRA---V---------------------------SKEEGEQFA-----KE--------NGLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 124 ~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~sa~~~~~i~~~~ 160 (210)
.+.+. . +.+++..++ .. ..+.++++||+++.||+++|
T Consensus 297 ~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF 376 (402)
T 1azs_C 297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 376 (402)
T ss_dssp HHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred hhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence 43221 1 135565553 22 24567899999999999999
Q ss_pred HHHHHHHHHHHhh
Q 028303 161 IKTAAKILQNIQE 173 (210)
Q Consensus 161 ~~l~~~~~~~~~~ 173 (210)
..+.+.++....+
T Consensus 377 ~~v~~~I~~~~l~ 389 (402)
T 1azs_C 377 NDCRDIIQRMHLR 389 (402)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998888766543
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.82 E-value=5.2e-21 Score=158.60 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=90.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCC--CCC-----------------------------CCCCCceeEEEEEEEEECC
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--FQP-----------------------------VHDLTIGVEFGARMVTIDG 52 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 52 (210)
...++|+++|+.++|||||+++|+... +.. +.....+.......+..+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 456899999999999999999997521 110 000111112211223333
Q ss_pred EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChh---hHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCC-
Q 028303 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRR- 127 (210)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~- 127 (210)
...+.||||||++.|...+...+..+|++|+|+|++++. +|....++...+......++| +|+++||+|+....
T Consensus 120 -~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 120 -HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp -SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred -CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 357899999999999998888999999999999999863 222111222222222223677 99999999995421
Q ss_pred -----CCCHHHHHHHHHHc-------CCeEEEEecCCCCCHHHHH
Q 028303 128 -----AVSKEEGEQFAKEN-------GLLFLEASARTAQNVEEAF 160 (210)
Q Consensus 128 -----~~~~~~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~ 160 (210)
....+++..++... +++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11123456666655 4569999999999998766
No 169
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.81 E-value=7.4e-20 Score=162.27 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=106.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCC-------CCC-------CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR-------FQP-------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (210)
...++|+++|++++|||||+++|++.. +.. ....+.+.+.....+.++.....+.||||||++.|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 456999999999999999999998641 100 011122333333333444445678999999999999
Q ss_pred hhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCCCC---CCHHHHHHHHHHcC---
Q 028303 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRA---VSKEEGEQFAKENG--- 142 (210)
Q Consensus 70 ~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~--- 142 (210)
......+..+|++|+|+|++++... ....++..+... ++| +|+++||+|+.+... ...+++.+++...+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~ 449 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 449 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence 8888999999999999999986432 233444444433 678 789999999975221 11245666676655
Q ss_pred --CeEEEEecCCC--------CCHHHHHHHHHHH
Q 028303 143 --LLFLEASARTA--------QNVEEAFIKTAAK 166 (210)
Q Consensus 143 --~~~~~~sa~~~--------~~i~~~~~~l~~~ 166 (210)
++++++||+++ .|+.++++.|.+.
T Consensus 450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred cceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 68999999998 3466666665543
No 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.4e-20 Score=160.34 Aligned_cols=156 Identities=14% Similarity=0.085 Sum_probs=100.9
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC------------C-----------------CceeEEEEEEEEECCEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD------------L-----------------TIGVEFGARMVTIDGRP 54 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~------------~-----------------~~~~~~~~~~~~~~~~~ 54 (210)
...++|+++|++++|||||+++|++........ . ..+.+.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 346899999999999999999998663221110 0 01222222222233344
Q ss_pred EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhH---HHHHHHHHHHHhhcCCC-CeEEEEEecCCCCCCCCCC
Q 028303 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLSSWLEDARQHANPN-MSIMLVGNKCDLAHRRAVS 130 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~---~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~~~~~~~ 130 (210)
..+.||||||++.+...+..+++.+|++|+|+|++++... .....+...+......+ .|+|+|+||+|+.+.....
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 6789999999999999999999999999999999875310 00111222221111224 3599999999997533222
Q ss_pred HH----HHHHHHHHc-----CCeEEEEecCCCCCHHHH
Q 028303 131 KE----EGEQFAKEN-----GLLFLEASARTAQNVEEA 159 (210)
Q Consensus 131 ~~----~~~~~~~~~-----~~~~~~~sa~~~~~i~~~ 159 (210)
.+ ++..++... .++++++||++|.|+.++
T Consensus 325 ~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 22 333344433 358999999999999876
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.80 E-value=2.7e-19 Score=133.14 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=98.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch----------hhhhhH
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----------FRSITR 73 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~ 73 (210)
....+|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ .+.+|||||... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4557999999999999999999998764443344444444333333433 467999999742 233333
Q ss_pred Hhh---ccccEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHHcC--Ce
Q 028303 74 SYY---RGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKENG--LL 144 (210)
Q Consensus 74 ~~~---~~~d~~i~V~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~ 144 (210)
.++ ..++++++|+|++++.+... +..|+ .. .+.|+++++||+|+....+ ...+.+..++.... +.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 344 46899999999988654432 22222 11 3689999999999754211 11244555555543 46
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Q 028303 145 FLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 145 ~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
++++|++++.+++++++.|.+.+.
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC
T ss_pred eEEEeecCCCCHHHHHHHHHHHHh
Confidence 789999999999999999887653
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.80 E-value=7.2e-20 Score=143.47 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=101.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC------CCc-----------------e---eEEE--------------
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD------LTI-----------------G---VEFG-------------- 44 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~------~~~-----------------~---~~~~-------------- 44 (210)
..++|+|+|.+|+|||||+++|++..+.+... ++. + .+..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999988753221 110 0 0000
Q ss_pred ---------EEEEEEC-CEEEEEEEEecCCcc-------------hhhhhhHHhhccccEEE-EEEECCChhhHHHHHHH
Q 028303 45 ---------ARMVTID-GRPIKLQIWDTAGQE-------------SFRSITRSYYRGAAGAL-LVYDITRRETFNHLSSW 100 (210)
Q Consensus 45 ---------~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~V~d~~~~~s~~~~~~~ 100 (210)
...+.+. .....+.+|||||.. .+......+++.++.++ +|+|+++..+......+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 0000000 002468999999953 34556777888888666 79999875443333233
Q ss_pred HHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc--C-CeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 101 LEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN--G-LLFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 101 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~-~~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
...+ ...+.|+++|+||+|+.+......+.+....... + .+++++||+++.|++++++.|.+...
T Consensus 185 ~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 185 AKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp HHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 3333 2347899999999999764432333222110011 2 35789999999999999999887433
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.80 E-value=1.7e-19 Score=149.12 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=102.5
Q ss_pred CCC-CceEEEEEEcCCCCCHHHHHHHHHhC--CCCCC-----------------------------CCCCceeEEEEEEE
Q 028303 1 MSY-DYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV-----------------------------HDLTIGVEFGARMV 48 (210)
Q Consensus 1 m~~-~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~ 48 (210)
|.. ...++|+++|++++|||||+++|++. .+... .....+.+... .
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~--~ 78 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL--W 78 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC--E
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE--E
Confidence 553 45699999999999999999999864 11110 00111222222 2
Q ss_pred EECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCe-EEEEEecC
Q 028303 49 TIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLSSWLEDARQHANPNMS-IMLVGNKC 121 (210)
Q Consensus 49 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~ 121 (210)
.++.....+.+|||||++.|...+..++..+|++|+|+|++++.. |+ ....++..+.. .++| +|+++||+
T Consensus 79 ~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~ 155 (458)
T 1f60_A 79 KFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKM 155 (458)
T ss_dssp EEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECG
T ss_pred EEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcc
Confidence 233344679999999999999999999999999999999997632 21 22223322222 2565 89999999
Q ss_pred CCCCCCC----CCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHH
Q 028303 122 DLAHRRA----VSKEEGEQFAKENG-----LLFLEASARTAQNVEEA 159 (210)
Q Consensus 122 D~~~~~~----~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~ 159 (210)
|+.+... ...+++..++...+ ++++++||+++.|+.++
T Consensus 156 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 156 DSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 9963211 11234555666554 68999999999998754
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.79 E-value=1.5e-21 Score=161.83 Aligned_cols=155 Identities=18% Similarity=0.194 Sum_probs=105.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (210)
..++|+++|++++|||||+++|.+..+.....+..+.+.....+..++ ..+.||||||++.|...+...+..+|++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 467899999999999999999987654433333223222222222333 467899999999999999889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CCHH--HHHHHHHHc--CCeEEEEecCCCCCHHH
Q 028303 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKE--EGEQFAKEN--GLLFLEASARTAQNVEE 158 (210)
Q Consensus 85 V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~--~~~~~~~~~--~~~~~~~sa~~~~~i~~ 158 (210)
|+|++++...... .++..+.. .++|+++++||+|+.+... +..+ +...++..+ .++++++||++|.|+++
T Consensus 81 VVda~~g~~~qT~-e~l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e 156 (501)
T 1zo1_I 81 VVAADDGVMPQTI-EAIQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE 156 (501)
T ss_dssp EEETTTBSCTTTH-HHHHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred EeecccCccHHHH-HHHHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence 9999884321111 22222222 3789999999999964211 1000 000011122 26899999999999999
Q ss_pred HHHHHHH
Q 028303 159 AFIKTAA 165 (210)
Q Consensus 159 ~~~~l~~ 165 (210)
+|+.|..
T Consensus 157 Lle~I~~ 163 (501)
T 1zo1_I 157 LLDAILL 163 (501)
T ss_dssp HHHHTTT
T ss_pred hhhhhhh
Confidence 9999864
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.78 E-value=2.5e-18 Score=147.96 Aligned_cols=117 Identities=16% Similarity=0.117 Sum_probs=82.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----------------CceeEEEEEEEEECCEEEEEEEEecCCcch
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL----------------TIGVEFGARMVTIDGRPIKLQIWDTAGQES 67 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (210)
+...+|+++|++|+|||||+++|.+......... ..+.++......+....+.+++|||||++.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 4567999999999999999999985432211100 011222222222333356789999999999
Q ss_pred hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (210)
Q Consensus 68 ~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (210)
+...+..+++.+|++++|+|++++..... ..++..+... ++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---cCCEEEEecCCchh
Confidence 99999999999999999999987644332 3444444432 78999999999986
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.78 E-value=4.4e-18 Score=131.13 Aligned_cols=126 Identities=17% Similarity=0.128 Sum_probs=84.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhc------
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR------ 77 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------ 77 (210)
..++|+|+|++|+|||||+++|++....... .+..+.......+..++ ..+.+|||||++.+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 4699999999999999999999998753322 22223333334445555 47889999999877654444433
Q ss_pred ---cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCC--CeEEEEEecCCCCCCCCCCHH
Q 028303 78 ---GAAGALLVYDITRRETFNHLSSWLEDARQHANPN--MSIMLVGNKCDLAHRRAVSKE 132 (210)
Q Consensus 78 ---~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~~~~~ 132 (210)
.+|++++|++++.......-..|+..+......+ .|+++|+||+|+........+
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e 172 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE 172 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence 7899999999876442222235566665543322 499999999998654444433
No 177
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.76 E-value=5.3e-18 Score=137.97 Aligned_cols=160 Identities=16% Similarity=0.097 Sum_probs=108.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch----hhhhhH---Hhhccc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSITR---SYYRGA 79 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~---~~~~~~ 79 (210)
..|+|+|++|||||||+++|++........+..+.......+.+++ ...+.+||+||... +..+.. ..+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3589999999999999999998743211112112222233344443 24678999999632 112222 234579
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 028303 80 AGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157 (210)
Q Consensus 80 d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 157 (210)
+.+++|+|++ ...+..+..+...+..... ...|.++++||+|+... ...+++.+.+...+..++.+||+++.+++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 9999999998 4556666666665544321 25799999999998653 23344555555567889999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028303 158 EAFIKTAAKILQN 170 (210)
Q Consensus 158 ~~~~~l~~~~~~~ 170 (210)
++++.|.+.+...
T Consensus 314 eL~~~i~~~l~~~ 326 (416)
T 1udx_A 314 ALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888653
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=9.2e-19 Score=140.81 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=102.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEE---------------------------------------
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR--------------------------------------- 46 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------- 46 (210)
..+|+|+|++|||||||+++|++..+.+....+.+......
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 45999999999999999999999877444333221000000
Q ss_pred -------------EEEE-CCEEEEEEEEecCCcchh-------------hhhhHHhhccccEEEEEEECCChhhHHHHHH
Q 028303 47 -------------MVTI-DGRPIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLSS 99 (210)
Q Consensus 47 -------------~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~ 99 (210)
.+.+ ......+.+|||||...+ ..+...+++.+|++|+|+|..+.+... ..
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~ 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence 0000 001225789999997765 557778899999999999876533211 23
Q ss_pred HHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 028303 100 WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (210)
Q Consensus 100 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 162 (210)
|+..+......+.|+++|+||+|+.+......+.+..+....+.+|++++++.+.++++.+..
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 444444444457899999999999765554444444444445678999999987776655443
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.76 E-value=7e-18 Score=145.78 Aligned_cols=162 Identities=14% Similarity=0.170 Sum_probs=106.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCcee------------EEE---------------------------
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGV------------EFG--------------------------- 44 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~------------~~~--------------------------- 44 (210)
..++|+|+|.+|+|||||+|+|++....+... +++.. +..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 46899999999999999999999987655322 22100 000
Q ss_pred --------------EEEEEECCEE--EEEEEEecCCcch---hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHH
Q 028303 45 --------------ARMVTIDGRP--IKLQIWDTAGQES---FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDAR 105 (210)
Q Consensus 45 --------------~~~~~~~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~ 105 (210)
...+.++... ..+.||||||... ....+..+++.+|++++|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0001111100 2478999999654 33456678899999999999998877766655544433
Q ss_pred hhcCCCCeEEEEEecCCCCCCCCCCHH----------HHHHH----HHH---------cCCeEEEEecC-----------
Q 028303 106 QHANPNMSIMLVGNKCDLAHRRAVSKE----------EGEQF----AKE---------NGLLFLEASAR----------- 151 (210)
Q Consensus 106 ~~~~~~~p~ivv~nK~D~~~~~~~~~~----------~~~~~----~~~---------~~~~~~~~sa~----------- 151 (210)
. .+.|+++|+||+|+......+.+ .+... ... ...+++++||+
T Consensus 228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 2 36789999999998643311111 12111 111 12368999999
Q ss_pred ---CCCCHHHHHHHHHHHHHH
Q 028303 152 ---TAQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 152 ---~~~~i~~~~~~l~~~~~~ 169 (210)
++.|++++++.|.+.+..
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHH
Confidence 999999999998886654
No 180
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.76 E-value=3.9e-20 Score=157.08 Aligned_cols=149 Identities=23% Similarity=0.205 Sum_probs=81.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCCceeEEEEEEEEECC
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF-------------------------------QPVHDLTIGVEFGARMVTIDG 52 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 52 (210)
...++|+++|++++|||||+++|+.... ..+.. .+++.......+..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~--~GiTid~~~~~~~~ 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERA--RGVTMDVASTTFES 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhc--CCeeEEeeEEEEEe
Confidence 3568999999999999999999964210 00011 12233333333344
Q ss_pred EEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChh---hH---HHHHHHHHHHHhhcCCCCe-EEEEEecCCCCC
Q 028303 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TF---NHLSSWLEDARQHANPNMS-IMLVGNKCDLAH 125 (210)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 125 (210)
....+.||||||++.|...+...+..+|++|+|+|++++. .+ ......+..+... ++| +|+|+||+|+.+
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~ 329 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMS 329 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGT
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEecccccc
Confidence 4567899999999999988888899999999999998642 11 1112222222222 565 899999999865
Q ss_pred CCCCC----HHHHHHHH-HHcCC-----eEEEEecCCCCCHH
Q 028303 126 RRAVS----KEEGEQFA-KENGL-----LFLEASARTAQNVE 157 (210)
Q Consensus 126 ~~~~~----~~~~~~~~-~~~~~-----~~~~~sa~~~~~i~ 157 (210)
..... .+++..++ ...++ +++++||++|.|+.
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 22111 12334444 33343 69999999999998
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.75 E-value=7.1e-18 Score=145.63 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=82.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCC--C------CCC----------CCCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--F------QPV----------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (210)
+...+|+|+|++|+|||||+++|+... + ... .....+.......+.+. .+.+.+|||||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 87 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDTPGH 87 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEEECCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEEEECcCc
Confidence 467899999999999999999998421 1 000 00111122222223333 467899999999
Q ss_pred chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
..+...+..+++.+|++|+|+|++++.+......|.. +.. .++|+++|+||+|+..
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 9999999999999999999999999877666655543 333 2789999999999864
No 182
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.75 E-value=1.1e-17 Score=140.24 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=78.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC--------------------CCCceeEEEEEEEEECCEEEEEEEEecCC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------------DLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 64 (210)
...+|+++|++++|||||+++|+........ ....+.+.......+....+.+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 4689999999999999999999864211100 00111221111122223346789999999
Q ss_pred cchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
++.|......+++.+|++|+|+|++++.... ...++..+. ..++|+++++||+|+..
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 9999988889999999999999999864322 222333222 24789999999999864
No 183
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.75 E-value=2.7e-19 Score=140.39 Aligned_cols=164 Identities=16% Similarity=0.258 Sum_probs=86.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhC-CCCCCC--------CCCceeEEEEEEEEECCEEEEEEEEecCCc-------ch
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDK-RFQPVH--------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQ-------ES 67 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 67 (210)
...++|+|+|++|+|||||+++|.+. .+.... .++.........+..++....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 35689999999999999999999875 333222 111111111111222344568899999998 44
Q ss_pred hhhhhH-------Hhhccc-------------cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303 68 FRSITR-------SYYRGA-------------AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (210)
Q Consensus 68 ~~~~~~-------~~~~~~-------------d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 127 (210)
+..+.. .+++.. ++++|+.+.+.. +++.+. ...+... ..+.|+++|+||.|+....
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAI-HNKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHH-TTTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCCHH
Confidence 554443 343332 345555554321 122222 1222222 2367999999999986533
Q ss_pred CC--CHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 028303 128 AV--SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172 (210)
Q Consensus 128 ~~--~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 172 (210)
.. ..+++.+++..++++++++||+++ +++++|..+.+.+.+..|
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 32 235677888889999999999999 999999999888764433
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.75 E-value=7.1e-18 Score=130.48 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=80.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhH-------Hh-
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR-------SY- 75 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~- 75 (210)
..++|+|+|.+|+|||||+++|++..+..... ...+.......+... ...+.+|||||...+..... .+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 46999999999999999999999887643221 111222222223333 45789999999876543221 11
Q ss_pred -hccccEEEEEEECCChhhHHH-HHHHHHHHHhhcCCC--CeEEEEEecCCCCCCCCCCHH
Q 028303 76 -YRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPN--MSIMLVGNKCDLAHRRAVSKE 132 (210)
Q Consensus 76 -~~~~d~~i~V~d~~~~~s~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~~~~~ 132 (210)
.+.+|++++|+|++... +.. ...|+..+......+ .|+++|+||+|+........+
T Consensus 116 ~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~ 175 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD 175 (270)
T ss_dssp TTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred hcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHH
Confidence 34789999999987532 222 235555555443322 699999999998654443443
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.74 E-value=1.3e-17 Score=131.65 Aligned_cols=161 Identities=14% Similarity=0.159 Sum_probs=95.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcee-----EEEEE---------------------------------
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV-----EFGAR--------------------------------- 46 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-----~~~~~--------------------------------- 46 (210)
..++|+|+|++|+|||||+|+|++..+.+......+. .....
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 4579999999999999999999998763322110000 00000
Q ss_pred -------------------EEE-ECCEEEEEEEEecCCcch-------------hhhhhHHhhccccEEEEEEECCChh-
Q 028303 47 -------------------MVT-IDGRPIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYDITRRE- 92 (210)
Q Consensus 47 -------------------~~~-~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~V~d~~~~~- 92 (210)
.+. .......+.+|||||... +......+++.+|++++|+|..+..
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 000 001123688999999653 4456777889999999999974322
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCC------CCCHHHHHHHHHHH
Q 028303 93 TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART------AQNVEEAFIKTAAK 166 (210)
Q Consensus 93 s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~------~~~i~~~~~~l~~~ 166 (210)
.......+...+ ...+.|+++|+||+|+........+.+.......+..++++++.. +.|+.++++.+.+.
T Consensus 183 ~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~ 259 (315)
T 1jwy_B 183 ANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILY 259 (315)
T ss_dssp TTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHH
Confidence 111111222222 234789999999999975443223322211111225577776554 67888888877665
Q ss_pred HH
Q 028303 167 IL 168 (210)
Q Consensus 167 ~~ 168 (210)
+.
T Consensus 260 ~~ 261 (315)
T 1jwy_B 260 FK 261 (315)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.73 E-value=1.3e-16 Score=138.05 Aligned_cols=118 Identities=18% Similarity=0.139 Sum_probs=82.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCC--CCCC-----------C-----CCCceeEEEEEEEEEC-----CEEEEEEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV-----------H-----DLTIGVEFGARMVTID-----GRPIKLQIW 60 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~~-----~~~~~~~i~ 60 (210)
+...+|+|+|+.++|||||+++|+... +... + ....+.......+.+. +..+.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 456899999999999999999997531 1100 0 0111122222223332 233789999
Q ss_pred ecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 61 D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
||||+..|...+..+++.+|++|+|+|++++........|. .+.. .++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH---cCCCEEEEEeCCCccc
Confidence 99999999999999999999999999999876554444443 2322 3789999999999854
No 187
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.73 E-value=3.6e-17 Score=141.32 Aligned_cols=116 Identities=20% Similarity=0.205 Sum_probs=82.6
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhC--CCCCC---C-------------CCCceeEEEEEEEEECCEEEEEEEEecCCc
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV---H-------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 65 (210)
+...+|+|+|++|+|||||+++|+.. .+... . ....+.......+.+. ...+.||||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCC
Confidence 46789999999999999999999852 21100 0 0111111112223334 367899999999
Q ss_pred chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
..+...+..+++.+|++++|+|++++.+......|.. +.. .+.|+++|+||+|+..
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 9999999999999999999999998776666555543 333 2789999999999864
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.72 E-value=4.5e-18 Score=138.03 Aligned_cols=85 Identities=22% Similarity=0.244 Sum_probs=47.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeE--EEEEEEE-------------------ECC-EEEEEEEEecCC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE--FGARMVT-------------------IDG-RPIKLQIWDTAG 64 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~-------------------~~~-~~~~~~i~D~~G 64 (210)
++|+++|.+|+|||||+|+|++........+..+.+ .....+. +++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999886322222211222 2211111 232 246899999999
Q ss_pred cch----hhhhhH---HhhccccEEEEEEECCCh
Q 028303 65 QES----FRSITR---SYYRGAAGALLVYDITRR 91 (210)
Q Consensus 65 ~~~----~~~~~~---~~~~~~d~~i~V~d~~~~ 91 (210)
... ...+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222333 346899999999999875
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=136.27 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=78.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCC--------CCCceeEEEEEEEEECCEEEEEEEEecCCcchhh-------
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------- 69 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------- 69 (210)
..++|+|+|++|+|||||+++|.+..+.... ..+.........+...+....+.+||++|...+.
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 4588999999999999999999988763221 1121111111111223344578999999976431
Q ss_pred hh------------------hHHhhccccEEEEEEECCCh-hhHHHHH-HHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303 70 SI------------------TRSYYRGAAGALLVYDITRR-ETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (210)
Q Consensus 70 ~~------------------~~~~~~~~d~~i~V~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (210)
.+ ...++..+++.+++|+.... .++.... .|+..+. .++|+|+|+||+|+.....+
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHH
Confidence 11 11233444443444433321 2222322 4444443 37899999999998654433
Q ss_pred CH--HHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 028303 130 SK--EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 130 ~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
.. +++.+.+...+++++++|++++.++.++|..+..
T Consensus 186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 32 5677778888999999999999999887766654
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.69 E-value=5.9e-18 Score=132.87 Aligned_cols=133 Identities=16% Similarity=0.130 Sum_probs=107.4
Q ss_pred HHHHHHHhCCCC-CCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChh-hHHHHH
Q 028303 21 CLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLS 98 (210)
Q Consensus 21 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~-s~~~~~ 98 (210)
+|+.++..+.|. ..+.+|.+..+. ..+..++ .+.+||+ ++.+..++..+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888887 788888885554 2222222 6889999 8999999999999999999999999987 688888
Q ss_pred HHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHHHHH
Q 028303 99 SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 99 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
.|+..+.. .++|+++|+||+|+.+...+ +++.+++..+. .+++++||+++.|++++|..+.
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 89887654 37899999999999654322 45667777766 8999999999999999998765
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.67 E-value=4.1e-17 Score=122.31 Aligned_cols=156 Identities=16% Similarity=0.101 Sum_probs=95.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEE------------EEEEEECC------------------EE
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG------------ARMVTIDG------------------RP 54 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~------------------~~ 54 (210)
...+|+++|++|+|||||+++|...............+.. .....++. ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4578999999999999999999865321111100000000 00011111 23
Q ss_pred EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028303 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 134 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 134 (210)
..+.+|||+|+-.... .+....+.+++|+|+.+.... ...+.. .. +.|+++|+||+|+........+++
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~---~~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPE---IF---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHH---HH---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhh---hh---hcCCEEEEecccCCcchhhHHHHH
Confidence 4678999998511110 111256789999998875321 111111 11 468899999999864333455666
Q ss_pred HHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 028303 135 EQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (210)
Q Consensus 135 ~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 171 (210)
...+... .++++++|++++.|+++++++|.+.+....
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 6666653 478999999999999999999988775543
No 192
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.66 E-value=8.9e-16 Score=129.24 Aligned_cols=115 Identities=18% Similarity=0.127 Sum_probs=81.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCC------------------C----CCCCCCCceeEEEEEEEEECCEEEEEEEEec
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKR------------------F----QPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 62 (210)
+.=+|+|+|+.++|||||..+|+... + ..+....+++......+.+. .+.++|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~--~~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR--DRVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET--TEEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC--CEEEEEEeC
Confidence 34689999999999999999996211 0 00111111222222233444 467899999
Q ss_pred CCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
||+.+|..-....++.+|++|+|+|+..+........|. .+..+ ++|.++++||+|...
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~-~a~~~---~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMD-VCRMR---ATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHH-HHHHT---TCCEEEEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHH-HHHHh---CCceEEEEecccchh
Confidence 999999999999999999999999999876555554453 33333 799999999999754
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.66 E-value=2.8e-15 Score=119.59 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=91.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEecCCcchhh--
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQESFR-- 69 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~-- 69 (210)
++|+++|.+|+|||||+|+|++........+..+.......+.+++. ...+.+|||||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987643322222222222222344442 1468999999987543
Q ss_pred --hh---hHHhhccccEEEEEEECCCh----------hhHHHHHHHHHHH------------------------------
Q 028303 70 --SI---TRSYYRGAAGALLVYDITRR----------ETFNHLSSWLEDA------------------------------ 104 (210)
Q Consensus 70 --~~---~~~~~~~~d~~i~V~d~~~~----------~s~~~~~~~~~~~------------------------------ 104 (210)
.+ ....++.+|++++|+|+++. +.+.++..+...+
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 22 33457899999999999862 2222222111111
Q ss_pred ----------H-------------------hh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCeEEEEecCC
Q 028303 105 ----------R-------------------QH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART 152 (210)
Q Consensus 105 ----------~-------------------~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 152 (210)
. .. .....|+++++|+.|..-......+.++.++...+.+++++||+.
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 0 00 012489999999999642222345677788888889999999763
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.63 E-value=8.3e-16 Score=135.33 Aligned_cols=117 Identities=21% Similarity=0.242 Sum_probs=85.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCC------------CCC----CCC--CCceeEEEEEEEE------------ECCE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR------------FQP----VHD--LTIGVEFGARMVT------------IDGR 53 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~------------~~~----~~~--~~~~~~~~~~~~~------------~~~~ 53 (210)
+...+|+|+|+.++|||||+++|+... +.. +.. .|.........+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 456899999999999999999998641 100 001 1222222222222 2344
Q ss_pred EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (210)
.+.++||||||+..|...+..+++.+|++|+|+|++++.+......|..... .++|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 7889999999999999999999999999999999999877777655554332 368999999999985
No 195
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.62 E-value=3.5e-16 Score=125.44 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=93.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEE----------------------------------------
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG---------------------------------------- 44 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 44 (210)
..++|+|+|.+++|||||+++|++..+.+......+....
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999998875322111000000
Q ss_pred ---------EEEEEEC-CEEEEEEEEecCCcc-------------hhhhhhHHhhcccc-EEEEEEECCChhhHHHHHHH
Q 028303 45 ---------ARMVTID-GRPIKLQIWDTAGQE-------------SFRSITRSYYRGAA-GALLVYDITRRETFNHLSSW 100 (210)
Q Consensus 45 ---------~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~~i~V~d~~~~~s~~~~~~~ 100 (210)
...+.+. .....+.||||||.. .+..+...+++..+ ++++|+|++....... +
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---~ 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---A 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---H
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---H
Confidence 0001110 012468999999953 34456666776555 5555667665322111 2
Q ss_pred HHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH--HHHcC-CeEEEEecCCCCCHHHHHHHHHH
Q 028303 101 LEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF--AKENG-LLFLEASARTAQNVEEAFIKTAA 165 (210)
Q Consensus 101 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~-~~~~~~sa~~~~~i~~~~~~l~~ 165 (210)
...+......+.|+++|+||+|+.+......+..... ....+ .+++++||+++.|++++++.+.+
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2223333345789999999999975433222211100 00012 24678999999999999998876
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.61 E-value=1.3e-17 Score=125.42 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=91.4
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEE------------EEEEEEC-CEE-----------------
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG------------ARMVTID-GRP----------------- 54 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 54 (210)
..++|+|+|++|+|||||+++|....+...+..+...++. ...+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999987654433334333322 1112221 111
Q ss_pred --EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028303 55 --IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 132 (210)
Q Consensus 55 --~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 132 (210)
..+.++|++|.-... ..+-...+..+.|+|+........ .+... . ..|.++|+||+|+.+......+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M---KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H---TTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH---h---hcCCEEEEeccccCchhHHHHH
Confidence 134445555421000 011112345566677532211100 00011 1 4688999999998654334567
Q ss_pred HHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 133 EGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 133 ~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
++..++... +++++++||+++.|++++|+.|.+.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 777777654 578999999999999999999987764
No 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.59 E-value=1.7e-15 Score=127.65 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=79.8
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCCceeEEEEEE---------------------------------
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDLTIGVEFGARM--------------------------------- 47 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~--------------------------------- 47 (210)
+..++|+|+|.+|+|||||+|+|++..+. ....+++........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999998764 122222111000000
Q ss_pred ---EEECCE-EEEEEEEecCCcch-----------hhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q 028303 48 ---VTIDGR-PIKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM 112 (210)
Q Consensus 48 ---~~~~~~-~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~ 112 (210)
..++.. ...+.+|||||... +...+..++..+|++++|+|+++.........++..+.. .+.
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~ 219 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HED 219 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCC
Confidence 000000 02578999999764 456677788999999999999885444445555555433 357
Q ss_pred eEEEEEecCCCCC
Q 028303 113 SIMLVGNKCDLAH 125 (210)
Q Consensus 113 p~ivv~nK~D~~~ 125 (210)
|+++|+||+|+..
T Consensus 220 pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 220 KIRVVLNKADMVE 232 (550)
T ss_dssp GEEEEEECGGGSC
T ss_pred CEEEEEECCCccC
Confidence 9999999999864
No 198
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.58 E-value=1.3e-15 Score=122.16 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=69.1
Q ss_pred EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC--HH
Q 028303 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KE 132 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~ 132 (210)
+.+.||||||... .....+..+|++++|+|....+....+.. .+ ...|+++|+||+|+.+..... .+
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---~~-----~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---GV-----LELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---TS-----GGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---hH-----hhcCCEEEEECCCCcChhHHHHHHH
Confidence 5688999999533 22344589999999999876544322221 01 135899999999985321111 11
Q ss_pred HHHHHHHH-------cCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 028303 133 EGEQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 133 ~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 169 (210)
+....... ++.+++++||+++.|++++++.|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 12222111 15789999999999999999999888765
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.58 E-value=7.6e-15 Score=117.72 Aligned_cols=156 Identities=17% Similarity=0.118 Sum_probs=94.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECC-------------------EEEEEEEEecCCcch
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-------------------RPIKLQIWDTAGQES 67 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~ 67 (210)
++|+++|.+|+|||||+++|++........+..+.........+++ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999998642211111111111111222321 235789999999765
Q ss_pred hh-------hhhHHhhccccEEEEEEECCCh----------hhHHHHHHHHHH---------------------------
Q 028303 68 FR-------SITRSYYRGAAGALLVYDITRR----------ETFNHLSSWLED--------------------------- 103 (210)
Q Consensus 68 ~~-------~~~~~~~~~~d~~i~V~d~~~~----------~s~~~~~~~~~~--------------------------- 103 (210)
.. ......++.+|++++|+|+++. +...++..+...
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 32 1233457899999999999852 112221110000
Q ss_pred ------------HHh-------------------hc-CCCCeEEEEEecCCC--CCC-CCCCHHHHHHHHHHcCCeEEEE
Q 028303 104 ------------ARQ-------------------HA-NPNMSIMLVGNKCDL--AHR-RAVSKEEGEQFAKENGLLFLEA 148 (210)
Q Consensus 104 ------------~~~-------------------~~-~~~~p~ivv~nK~D~--~~~-~~~~~~~~~~~~~~~~~~~~~~ 148 (210)
+.. .. ....|+++++||.|. .+. .....+.++.++...+.+++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 000 00 113799999999984 221 1234567788888888999999
Q ss_pred ecCCCCCHHHHHHH
Q 028303 149 SARTAQNVEEAFIK 162 (210)
Q Consensus 149 sa~~~~~i~~~~~~ 162 (210)
||+.+..+.++.+.
T Consensus 242 SAk~E~el~eL~~~ 255 (368)
T 2dby_A 242 SARLEAELAELSGE 255 (368)
T ss_dssp CHHHHHHHHTSCHH
T ss_pred echhHHHHHHhchH
Confidence 99987666655443
No 200
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.4e-13 Score=110.42 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=100.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcchh-------hhhhHHhhcc
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-------RSITRSYYRG 78 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 78 (210)
..+|+++|.|++|||||+|+|++........+..+.+.....+.+++. ++.++||||.... .......++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 468999999999999999999998755555555677777777777774 5779999995321 1223456788
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEecCCCCC--------CCCCCHHHHHHHHHHcCCeEEEE
Q 028303 79 AAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAH--------RRAVSKEEGEQFAKENGLLFLEA 148 (210)
Q Consensus 79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 148 (210)
+|++++|+|++++.. ........+.... -...|.++++||.|... ....+.++.+.+...+.+..-++
T Consensus 150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv 227 (376)
T 4a9a_A 150 CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI 227 (376)
T ss_dssp CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence 999999999998743 2222222222221 13568889999999632 23455667777666655443333
Q ss_pred ecCCCCCHHHHHH
Q 028303 149 SARTAQNVEEAFI 161 (210)
Q Consensus 149 sa~~~~~i~~~~~ 161 (210)
-...+...+++.+
T Consensus 228 ~~~~nv~eddl~d 240 (376)
T 4a9a_A 228 AFRCDATVDDLID 240 (376)
T ss_dssp EECSCCCHHHHHH
T ss_pred eecccCCHHHHHH
Confidence 3344555555544
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.53 E-value=3.2e-15 Score=128.13 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=81.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCC--C------CCC--CCC------CceeEEEEEEEEECCEEEEEEEEecCCcchhhh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKR--F------QPV--HDL------TIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~--~------~~~--~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (210)
-||+|+|+.++|||||..+|+... . ... ... ..+++.......+..+.+.++|+||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 478999999999999999986321 0 000 000 112333333333444556789999999999999
Q ss_pred hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 71 ~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
.....++.+|++|+|+|+..+-......-| ..+... ++|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc---CCCeEEEEecccccc
Confidence 999999999999999999987544443333 344443 689999999999753
No 202
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.52 E-value=4.1e-13 Score=116.52 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=81.1
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhC--------CCCC----------CCCCCceeEEEEEEEEEC-----CEEEEEEEE
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDK--------RFQP----------VHDLTIGVEFGARMVTID-----GRPIKLQIW 60 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~--------~~~~----------~~~~~~~~~~~~~~~~~~-----~~~~~~~i~ 60 (210)
++.=+|+|+|+.++|||||..+|+.. .... +....+++......+.+. ...+.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 34568999999999999999998621 1100 111111222223333332 235789999
Q ss_pred ecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC
Q 028303 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (210)
Q Consensus 61 D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (210)
||||+.+|.......++.+|++|+|+|+..+-......-|.... .. ++|.++++||+|..
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~-~~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQAN-KY---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH-HH---TCCEEEEEECSSST
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHH-Hc---CCCeEEEEcccccc
Confidence 99999999999999999999999999999876544444444443 33 78999999999974
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.50 E-value=1.3e-13 Score=105.85 Aligned_cols=111 Identities=16% Similarity=0.018 Sum_probs=67.6
Q ss_pred EEEEEEecCCcchhhhhhH------HhhccccEEEEEEECCChhhHHHHHHHHH-HHHhhcCCCCeEEEEEecCCCCCCC
Q 028303 55 IKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKCDLAHRR 127 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~V~d~~~~~s~~~~~~~~~-~~~~~~~~~~p~ivv~nK~D~~~~~ 127 (210)
+.+.+|||||......... ..+.. +++++|+|+.............. ........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4688999999876543321 23455 89999998764322222211111 1111111268999999999986432
Q ss_pred CCCHHHHHHH----------------------------HHHcC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 128 AVSKEEGEQF----------------------------AKENG--LLFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 128 ~~~~~~~~~~----------------------------~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
. .+++.++ +...+ .+++++||+++.|+++++++|.+.+.
T Consensus 188 ~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 E--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp H--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred c--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 1 1111111 22322 47899999999999999999877653
No 204
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.50 E-value=3.3e-13 Score=107.84 Aligned_cols=103 Identities=11% Similarity=0.034 Sum_probs=62.1
Q ss_pred EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028303 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 134 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 134 (210)
+.+.++||+|.... .......+|++++|+|+..+.....+.. .+ ...|.++|+||+|+.+.... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 46789999996422 2344678999999999987643222211 11 14588999999998531110 0011
Q ss_pred HHHHH----------HcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 028303 135 EQFAK----------ENGLLFLEASARTAQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 135 ~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 169 (210)
..+.. .+..+++.+|++++.|+++++++|.+.+..
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 12211 124578999999999999999999887643
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.48 E-value=2.4e-14 Score=114.17 Aligned_cols=103 Identities=14% Similarity=0.037 Sum_probs=64.9
Q ss_pred EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC--HH
Q 028303 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KE 132 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~ 132 (210)
+.+.||||||...... .....+|++++|+|+..+.....+.. .. .+.|.++|+||+|+.+..... .+
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 5688999999654433 24689999999999976543211111 11 135789999999986421111 01
Q ss_pred HHHHHHHHc-------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 133 EGEQFAKEN-------GLLFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 133 ~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
+........ ..+++++||+++.|++++++.|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 222222221 356899999999999999999988765
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.48 E-value=5.6e-14 Score=121.35 Aligned_cols=156 Identities=16% Similarity=0.148 Sum_probs=95.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcee---EE--------------------------------------
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV---EF-------------------------------------- 43 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~-------------------------------------- 43 (210)
..++|+|+|.+++|||||+|+|++..+.+......+. ..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4579999999999999999999998764322211110 00
Q ss_pred ----------EEEEEEECCEEEEEEEEecCCcch-------------hhhhhHHhh-ccccEEEEEEECCChhhHHHHHH
Q 028303 44 ----------GARMVTIDGRPIKLQIWDTAGQES-------------FRSITRSYY-RGAAGALLVYDITRRETFNHLSS 99 (210)
Q Consensus 44 ----------~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~V~d~~~~~s~~~~~~ 99 (210)
....+..++ ...+.|+||||... .......++ ..+|++++|+|++......+...
T Consensus 130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 000011111 12477999999432 223344444 57899999999987533222222
Q ss_pred HHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH----cC-CeEEEEecCCCCCHHHHHHHHHHH
Q 028303 100 WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE----NG-LLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 100 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
+...+ ...+.|+++|+||+|+.+....... ... ... .+ .+++.+||+++.|++++++.+.+.
T Consensus 209 ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEV---DPQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHH---CTTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHH---HhcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 22333 2347899999999999754433221 111 000 12 346789999999999998887763
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.38 E-value=8.7e-13 Score=103.43 Aligned_cols=97 Identities=19% Similarity=0.142 Sum_probs=78.6
Q ss_pred cchhhhhhHHhhccccEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC-HHHHHHHHHHcC
Q 028303 65 QESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-KEEGEQFAKENG 142 (210)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~V~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 142 (210)
++.+..+...++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+...+. .++...++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5667777778999999999999999986 78888888876654 378999999999996533212 345566777778
Q ss_pred CeEEEEecCCCCCHHHHHHHHH
Q 028303 143 LLFLEASARTAQNVEEAFIKTA 164 (210)
Q Consensus 143 ~~~~~~sa~~~~~i~~~~~~l~ 164 (210)
++++++||+++.|++++++.+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 9999999999999999998653
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.36 E-value=2.3e-11 Score=98.14 Aligned_cols=85 Identities=21% Similarity=0.227 Sum_probs=61.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCceeEEEEEEEEECCE---------------EEEEEEEecCCcch--
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES-- 67 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~-- 67 (210)
..+|+++|++|+|||||+|.|++... .....++.+.......+.+++. ...+.+||+||...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 46899999999999999999999765 3344444455555555556541 13578999999432
Q ss_pred -----hhhhhHHhhccccEEEEEEECCC
Q 028303 68 -----FRSITRSYYRGAAGALLVYDITR 90 (210)
Q Consensus 68 -----~~~~~~~~~~~~d~~i~V~d~~~ 90 (210)
........++.+|++++|+|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33345566789999999999863
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.35 E-value=1.8e-12 Score=103.08 Aligned_cols=104 Identities=8% Similarity=0.027 Sum_probs=62.8
Q ss_pred EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHH
Q 028303 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 133 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 133 (210)
.+.+.|+||+|...... .....+|++++|+|+..++....+... +. ..|.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence 34688999999653322 335789999999998754322111111 11 23557788999974322111111
Q ss_pred HHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 134 GEQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 134 ~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
.+.+... +..+++.+|++++.|++++++.|.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222221 1357889999999999999999888654
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=105.75 Aligned_cols=88 Identities=18% Similarity=0.132 Sum_probs=52.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCE---------------EEEEEEEecCCcchhh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQESFR 69 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~ 69 (210)
..++|+++|.+|+|||||+++|++........++.+.+.....+.+++. ...+.+||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3478999999999999999999988764444444444444444555442 2358999999976544
Q ss_pred h-------hhHHhhccccEEEEEEECCChh
Q 028303 70 S-------ITRSYYRGAAGALLVYDITRRE 92 (210)
Q Consensus 70 ~-------~~~~~~~~~d~~i~V~d~~~~~ 92 (210)
. .+..+++.+|++++|+|+.+..
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 4567789999999999997543
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.27 E-value=6.2e-12 Score=92.07 Aligned_cols=104 Identities=7% Similarity=-0.022 Sum_probs=68.6
Q ss_pred cCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHH---Hhhc--CCCCeEEEEEecC-CCCCCCCCCHHHHH
Q 028303 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA---RQHA--NPNMSIMLVGNKC-DLAHRRAVSKEEGE 135 (210)
Q Consensus 62 ~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~---~~~~--~~~~p~ivv~nK~-D~~~~~~~~~~~~~ 135 (210)
.+|++..+.+|..|+.++|++|||+|++|.+-.+ .+..+..+ .... ..++|++|++||. |++. ..+..++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence 3478899999999999999999999999875433 33333222 2221 1578999999995 6743 45555554
Q ss_pred HHHHH----cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 028303 136 QFAKE----NGLLFLEASARTAQNVEEAFIKTAAKIL 168 (210)
Q Consensus 136 ~~~~~----~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 168 (210)
+.... ....++.|||.+|+|+.+.++||.+.+.
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 43322 2345889999999999999999987654
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.15 E-value=1.5e-10 Score=88.82 Aligned_cols=105 Identities=6% Similarity=-0.053 Sum_probs=73.5
Q ss_pred cCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHH----HHHHhhc-CCCCeEEEEEec-CCCCCCCCCCHHHHH
Q 028303 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWL----EDARQHA-NPNMSIMLVGNK-CDLAHRRAVSKEEGE 135 (210)
Q Consensus 62 ~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~----~~~~~~~-~~~~p~ivv~nK-~D~~~~~~~~~~~~~ 135 (210)
.+|++..+.+|..|+.++|++|||+|++|.+.++ .+..+ ..+.... ..++|++|++|| .|++. ..+..++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence 4688999999999999999999999999876433 22222 2222211 258999999996 58754 44555554
Q ss_pred HHHHH----cCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 028303 136 QFAKE----NGLLFLEASARTAQNVEEAFIKTAAKILQ 169 (210)
Q Consensus 136 ~~~~~----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 169 (210)
+.... ....+..+||.+|+|+.+.++||.+.+.+
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 43322 23348899999999999999999887643
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.03 E-value=5.8e-10 Score=89.62 Aligned_cols=96 Identities=26% Similarity=0.331 Sum_probs=72.2
Q ss_pred CcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH----HH
Q 028303 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF----AK 139 (210)
Q Consensus 64 G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~ 139 (210)
..+.|...+..+.+..|++++|+|+.++. ..|...+..... +.|+++|+||+|+.... ...++..++ +.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 45788889999999999999999999864 344444444432 68999999999996533 233444433 55
Q ss_pred HcCC---eEEEEecCCCCCHHHHHHHHHHH
Q 028303 140 ENGL---LFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 140 ~~~~---~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
..+. +++.+||+++.|++++++.|.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6676 79999999999999999988664
No 214
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.93 E-value=1.6e-09 Score=83.99 Aligned_cols=125 Identities=10% Similarity=0.060 Sum_probs=81.1
Q ss_pred EecCCcc-hhhhhhHHhhccccEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHH
Q 028303 60 WDTAGQE-SFRSITRSYYRGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ 136 (210)
Q Consensus 60 ~D~~G~~-~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 136 (210)
-..||+. .........+.++|++++|+|+.++.+..+ +..++ .+.|.++|+||+|+.+.. ..+...+
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~~ 73 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWKE 73 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHHH
Confidence 3568875 555667778899999999999999876542 33332 368999999999996521 1122334
Q ss_pred HHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHHHhh---ccccccccCCcccccCCCCCC
Q 028303 137 FAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE---GALDAVNDSGIKVGYGRGQGP 194 (210)
Q Consensus 137 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 194 (210)
++...+++++.+||+++.|+.++++.+.+.+...... ............+|.++.|+|
T Consensus 74 ~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKS 134 (282)
T 1puj_A 74 HFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKS 134 (282)
T ss_dssp HHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHH
T ss_pred HHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchH
Confidence 4545578899999999999999999888776654321 111111122566777776664
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.91 E-value=1.9e-09 Score=89.67 Aligned_cols=151 Identities=11% Similarity=0.060 Sum_probs=82.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHH------hCCCCC----CCCCC-----------ceeEEEEEEEE-------------E
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFT------DKRFQP----VHDLT-----------IGVEFGARMVT-------------I 50 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~------~~~~~~----~~~~~-----------~~~~~~~~~~~-------------~ 50 (210)
....|+|+|.+|+||||++++|. +.+..- .+.+. .+..+...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998 332100 00000 00111110000 0
Q ss_pred CCEEEEEEEEecCCcchhhh-hhH---Hh--hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEecCCC
Q 028303 51 DGRPIKLQIWDTAGQESFRS-ITR---SY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDL 123 (210)
Q Consensus 51 ~~~~~~~~i~D~~G~~~~~~-~~~---~~--~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 123 (210)
....+.+.|+||||...... ++. .. ...+|.+++|+|+......... ...+.. .+|+ ++|+||+|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD----KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH----HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh----hcCceEEEEeCCcc
Confidence 00235688999999753221 111 11 2278999999999876432222 122222 1464 899999998
Q ss_pred CCCCCCCHHHHHHHHHHcCCeE------------------EEEecCCCCC-HHHHHHHHHHH
Q 028303 124 AHRRAVSKEEGEQFAKENGLLF------------------LEASARTAQN-VEEAFIKTAAK 166 (210)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~sa~~~~~-i~~~~~~l~~~ 166 (210)
..... .+.......+.|+ +.+|+..+.+ +.++++++.+.
T Consensus 253 ~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 64221 1222333444443 2357778888 88888877654
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.90 E-value=3.3e-08 Score=80.42 Aligned_cols=139 Identities=17% Similarity=0.240 Sum_probs=68.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CceeEEEEEEEEEC--CEEEEEEEEecCCcchh--------------
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMVTID--GRPIKLQIWDTAGQESF-------------- 68 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~-------------- 68 (210)
++++|+|++|+|||||++.|.+..+...... ..+.......+... +....+.++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 5799999999999999999998754321111 11111111222222 22236889999885321
Q ss_pred hhhh----HHh---------hcc--cc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCC--
Q 028303 69 RSIT----RSY---------YRG--AA-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-- 130 (210)
Q Consensus 69 ~~~~----~~~---------~~~--~d-~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-- 130 (210)
...+ ..+ ... +| +++|+.|...+-+..++ ..+... ..+.|+|+|.||+|........
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di----eilk~L-~~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL----VTMKKL-DSKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH----HHHHHT-CSCSEEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH----HHHHHH-hhCCCEEEEEcchhccchHHHHHH
Confidence 0111 111 011 23 36667777654332222 222222 2478999999999975322110
Q ss_pred HHHHHHHHHHcCCeEEEEec
Q 028303 131 KEEGEQFAKENGLLFLEASA 150 (210)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~sa 150 (210)
...+...+...+++++.+|.
T Consensus 198 ~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 198 KIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHcCCcEEecCC
Confidence 01122222234666666664
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.90 E-value=1.6e-09 Score=87.14 Aligned_cols=98 Identities=23% Similarity=0.219 Sum_probs=70.5
Q ss_pred CCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH----H
Q 028303 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF----A 138 (210)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~ 138 (210)
..++.|...+..+.+.++++++|+|+.++.+ .|...+.... .+.|+++|+||+|+.... ...+...++ +
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMA 128 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHH
Confidence 3478899999999899999999999999763 2333333332 268999999999996532 233444433 4
Q ss_pred HHcCC---eEEEEecCCCCCHHHHHHHHHHHH
Q 028303 139 KENGL---LFLEASARTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 139 ~~~~~---~~~~~sa~~~~~i~~~~~~l~~~~ 167 (210)
...+. .++.+||+++.|++++++.|.+..
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 55566 689999999999999999886653
No 218
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.87 E-value=1.5e-10 Score=93.17 Aligned_cols=136 Identities=17% Similarity=0.171 Sum_probs=76.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC-----CCCC-CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh--------hh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK-----RFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------IT 72 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~ 72 (210)
.+|+++|.+|+|||||+|+|++. .... ...+ +.+.....+.++.. +.++||||...... ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999986 2211 1111 22223333444432 67999999532221 11
Q ss_pred HHhh--ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHH-HHHHcCCeEEEEe
Q 028303 73 RSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ-FAKENGLLFLEAS 149 (210)
Q Consensus 73 ~~~~--~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~~~~~~~~s 149 (210)
..++ +..|.++++++....-.+..+.. +......+.|+++++||.|..+.... +.+.+ +.+..+..+.+.+
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~--~~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL--EKADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG--GGHHHHHHHHBTTTBCSSC
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH--HHHHHHHHHhcCCccCCCC
Confidence 2222 67889999999843210001100 11122346899999999998654332 22333 3344555555555
Q ss_pred cCCC
Q 028303 150 ARTA 153 (210)
Q Consensus 150 a~~~ 153 (210)
+...
T Consensus 312 ~~~~ 315 (369)
T 3ec1_A 312 KRYA 315 (369)
T ss_dssp GGGT
T ss_pred chhh
Confidence 4443
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.82 E-value=1.4e-08 Score=78.14 Aligned_cols=137 Identities=20% Similarity=0.217 Sum_probs=69.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-------CCceeEEEEEEEEEC--CEEEEEEEEecCCcchh-------h
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-------LTIGVEFGARMVTID--GRPIKLQIWDTAGQESF-------R 69 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~-------~ 69 (210)
.++++|+|++|+|||||++.|.+........ ...........+... +-...++++|++|.... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5899999999999999999998754322110 000000001111111 12236789999883210 0
Q ss_pred hh-------h----H----------HhhccccEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCC
Q 028303 70 SI-------T----R----------SYYRGAAGALLVYDIT-RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (210)
Q Consensus 70 ~~-------~----~----------~~~~~~d~~i~V~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 127 (210)
.+ . . ..+..+++.++++|.. .+-...+ ...+..+ ... .++|+|++|.|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L---~~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL---SKV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH---HTT-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH---Hhc-CcEEEEEeccccCCHH
Confidence 00 0 0 0112357888888854 3222112 1222222 223 8999999999975422
Q ss_pred CC--CHHHHHHHHHHcCCeEEE
Q 028303 128 AV--SKEEGEQFAKENGLLFLE 147 (210)
Q Consensus 128 ~~--~~~~~~~~~~~~~~~~~~ 147 (210)
.. ..+.+.+.+...++.+|+
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 11 112233445556776654
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.77 E-value=1.1e-07 Score=77.32 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=80.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc-eeE--EEEEEEEECCEEEEEEEEecCCcchhhhhhH-----Hhhcc
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-GVE--FGARMVTIDGRPIKLQIWDTAGQESFRSITR-----SYYRG 78 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-----~~~~~ 78 (210)
..++|+|++|||||||+|.+.+........... +.. ......... ....+.+||++|......... ..+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 478999999999999999999854322211111 110 001111111 111467999998532211111 12334
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCC-------CCCCCCHHHH----HHHH----HHcC-
Q 028303 79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA-------HRRAVSKEEG----EQFA----KENG- 142 (210)
Q Consensus 79 ~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~----~~~~----~~~~- 142 (210)
.+..++ ++...+. -..+. ....+.. .+.|+++|.||.|+. .-.....++. +++. .+.+
T Consensus 149 ~~~~~~-lS~G~~~-kqrv~-la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 149 YDFFII-ISATRFK-KNDID-IAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp CSEEEE-EESSCCC-HHHHH-HHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCeEE-eCCCCcc-HHHHH-HHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455554 7765211 11111 1112222 268999999999963 1122233333 3332 1222
Q ss_pred --CeEEEEec--CCCCCHHHHHHHHHHHH
Q 028303 143 --LLFLEASA--RTAQNVEEAFIKTAAKI 167 (210)
Q Consensus 143 --~~~~~~sa--~~~~~i~~~~~~l~~~~ 167 (210)
..++.+|+ ..+.+++++.+.+.+.+
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 35788999 45567888888776654
No 221
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.75 E-value=1.3e-09 Score=87.68 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=73.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCC-----CCCCCceeEEEEEEEEECCEEEEEEEEecCCcchhhh----h----hH
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----I----TR 73 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~----~~ 73 (210)
.+|+++|.+|+|||||+|+|++..... ......+.+.....+.+... +.++||||...... + ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 579999999999999999999863211 11122233334444444432 67999999543221 1 11
Q ss_pred Hh--hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCeEEEE
Q 028303 74 SY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEA 148 (210)
Q Consensus 74 ~~--~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~ 148 (210)
.+ .+..+.++++++.........+.. +......+.|+++++||.|..+... .+.+.+++. ..+..+.+.
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~--~~~~~~~~~~~~g~~l~p~ 309 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK--LEKADELYKNHAGDLLSPP 309 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE--HHHHHHHHHHHBTTTBCSS
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc--HHHHHHHHHHHhCCccCCC
Confidence 11 356788999998743210001100 1112234689999999999865332 344444444 345443333
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.54 E-value=8e-08 Score=74.39 Aligned_cols=58 Identities=28% Similarity=0.405 Sum_probs=35.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcc
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 66 (210)
..++|+++|.+|+|||||+|+|.+......... .+.+.....+.++. .+.+|||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 458999999999999999999998764332221 12222222233332 46799999954
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.52 E-value=2e-07 Score=76.23 Aligned_cols=86 Identities=15% Similarity=0.048 Sum_probs=52.0
Q ss_pred EEEEEEecCCcchhhh-----hhH-HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303 55 IKLQIWDTAGQESFRS-----ITR-SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~-----~~~-~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (210)
+.+.|+||+|...... +.. .....+|.+++|+|+.......+.. ..+... -.+..+|+||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~---~~i~gVIlTKlD~~~--- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA---TPIGSIIVTKLDGSA--- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS---CTTEEEEEECCSSCS---
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh---CCCeEEEEECCCCcc---
Confidence 5688999999543221 111 1233579999999998754432222 222222 235578999999743
Q ss_pred CCHHHHHHHHHHcCCeEEEEec
Q 028303 129 VSKEEGEQFAKENGLLFLEASA 150 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~sa 150 (210)
..-.+.......+.|+.+++.
T Consensus 254 -~gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 254 -KGGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp -SHHHHHHHHHTTCCCEEEEEC
T ss_pred -cccHHHHHHHHHCCCEEEEEc
Confidence 223345556667888877775
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.45 E-value=6.1e-08 Score=74.28 Aligned_cols=57 Identities=25% Similarity=0.412 Sum_probs=35.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (210)
++++++|.+|+|||||+|+|.+...... ..+.+.+.....+.++. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 5899999999999999999998765332 12223332222233322 467999999654
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.44 E-value=3.1e-08 Score=75.90 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=62.5
Q ss_pred cCCcc-hhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028303 62 TAGQE-SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE 140 (210)
Q Consensus 62 ~~G~~-~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 140 (210)
.||+. .........+.++|+++.|+|+.++.+..+.. +. + . +.|.++|+||+|+.+.. ..+...+++..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~~--~~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADEK--TTKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCHH--HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCHH--HHHHHHHHHHH
Confidence 36654 33345677789999999999999886643311 11 1 1 68999999999996521 11233445555
Q ss_pred cCCeEEEEecCCCCCHHHHHHHHHHH
Q 028303 141 NGLLFLEASARTAQNVEEAFIKTAAK 166 (210)
Q Consensus 141 ~~~~~~~~sa~~~~~i~~~~~~l~~~ 166 (210)
.+.++ .+|++++.|++++++.+...
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 67888 99999999999988876543
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.32 E-value=2.2e-07 Score=75.83 Aligned_cols=87 Identities=15% Similarity=0.057 Sum_probs=52.7
Q ss_pred EEEEEEEecCCcch--hhh----hhHH--hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCC
Q 028303 54 PIKLQIWDTAGQES--FRS----ITRS--YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (210)
Q Consensus 54 ~~~~~i~D~~G~~~--~~~----~~~~--~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (210)
.+.+.++||||... ... .... .....|.+++|+|+.......+.. ..+... -.+..+|+||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a---~~f~~~---~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA---SRFHQA---SPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH---HHHHHH---CSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH---HHHhcc---cCCcEEEEecccccc
Confidence 35677999999543 111 1111 112468999999998764433322 222222 235789999999742
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEEec
Q 028303 126 RRAVSKEEGEQFAKENGLLFLEASA 150 (210)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~sa 150 (210)
..-.+.......+.|+.+++.
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~ 273 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT 273 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC
T ss_pred ----cchHHHHHHHHHCCCEEEEEC
Confidence 233455566667899887775
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.30 E-value=2.9e-06 Score=69.47 Aligned_cols=84 Identities=14% Similarity=0.024 Sum_probs=48.8
Q ss_pred EEEEEEEecCCcchhhhhh----HHh--hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-e-EEEEEecCCCCC
Q 028303 54 PIKLQIWDTAGQESFRSIT----RSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-S-IMLVGNKCDLAH 125 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~~~ 125 (210)
.+.+.|+||||........ ... +..+|.+++|+|+..+.. .......+. ... | ..+|+||+|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence 3567899999965432211 111 226899999999876542 212222221 134 5 789999999743
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEE
Q 028303 126 RRAVSKEEGEQFAKENGLLFLEA 148 (210)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~ 148 (210)
. ...+..+....+.++..+
T Consensus 253 ~----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 K----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp T----THHHHHHHHHSSCCEEEE
T ss_pred c----hHHHHHHHHHHCCCEEEe
Confidence 1 123444566667776655
No 228
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.27 E-value=1e-06 Score=74.63 Aligned_cols=63 Identities=21% Similarity=0.114 Sum_probs=39.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CceeEEEEEEEE--E-CCEEEEEEEEecCCcc
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVT--I-DGRPIKLQIWDTAGQE 66 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~--~-~~~~~~~~i~D~~G~~ 66 (210)
.+.+.|+|+|.+|+|||||+|+|++....-.... +.+.+.....+. + ......+.++||||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 3568899999999999999999998764211111 112222222221 1 1223467899999954
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.19 E-value=4.9e-06 Score=64.81 Aligned_cols=92 Identities=15% Similarity=0.085 Sum_probs=55.9
Q ss_pred EEEEEEEecCCcch--hhh-hhH-----HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCC
Q 028303 54 PIKLQIWDTAGQES--FRS-ITR-----SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLA 124 (210)
Q Consensus 54 ~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 124 (210)
.+.+.++||||... ... +.. .....+|.+++|+|+..... .......+.. ..| ..+|+||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 34688999999765 322 211 13447899999999875422 2222222222 245 67889999964
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 158 (210)
. ....+..+....+.|+..++ .|+++++
T Consensus 253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 A----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp T----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred c----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 2 23345566777788887776 4555543
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.12 E-value=7.4e-07 Score=69.61 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=60.1
Q ss_pred hhHHhhccccEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHHcCCeEEE
Q 028303 71 ITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKENGLLFLE 147 (210)
Q Consensus 71 ~~~~~~~~~d~~i~V~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~ 147 (210)
+....+.++|.+++|+|+.+|... ..+..++.... ..++|.++|+||+|+.+... ...++..+.+...+.+++.
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~ 155 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 155 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence 444568899999999999977543 33333333222 23789999999999975422 0123445566666889999
Q ss_pred EecCCCCCHHHHHH
Q 028303 148 ASARTAQNVEEAFI 161 (210)
Q Consensus 148 ~sa~~~~~i~~~~~ 161 (210)
+|+.++.|++++++
T Consensus 156 ~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 156 TSSKDQDSLADIIP 169 (307)
T ss_dssp CCHHHHTTCTTTGG
T ss_pred EecCCCCCHHHHHh
Confidence 99998888776654
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.11 E-value=7.2e-06 Score=70.01 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCCC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKRF 31 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~ 31 (210)
..|+|+|++|||||||++.+.+...
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-
T ss_pred CeEEEECCCCChHHHHHHHHhCCCC
Confidence 3599999999999999999998743
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.00 E-value=2e-05 Score=62.17 Aligned_cols=91 Identities=11% Similarity=0.016 Sum_probs=51.7
Q ss_pred EEEEEecCCcchhhhhhH----H--hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC
Q 028303 56 KLQIWDTAGQESFRSITR----S--YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (210)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~----~--~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (210)
.+.++|++|......... . ..-..|-.++++|+..... +......+.... + ..++++||.|...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~---~~~~~~~~~~~~--~-it~iilTKlD~~a---- 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA---IVEQARQFNEAV--K-IDGIILTKLDADA---- 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHHS--C-CCEEEEECGGGCS----
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH---HHHHHHHHHHhc--C-CCEEEEeCcCCcc----
Confidence 356799999643222111 1 1124688999999776532 223333333222 2 3478889999632
Q ss_pred CHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303 130 SKEEGEQFAKENGLLFLEASARTAQNVEE 158 (210)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 158 (210)
..-.+.......+.|+..++ +|+++++
T Consensus 283 ~~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 283 RGGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 12345566677788888776 5555543
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.95 E-value=3e-05 Score=61.74 Aligned_cols=83 Identities=18% Similarity=0.171 Sum_probs=54.6
Q ss_pred hccccEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCC-CHHHHHHHHHHcCCeEEEEecCCC
Q 028303 76 YRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKENGLLFLEASARTA 153 (210)
Q Consensus 76 ~~~~d~~i~V~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~sa~~~ 153 (210)
+.++|.+++|.+. +|.. ...+..++...... ++|.++|+||+|+.+.... ..++....+...+++++.+|+.++
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 5788999988665 4543 33344444333333 6888999999999653210 012233445567889999999999
Q ss_pred CCHHHHHHH
Q 028303 154 QNVEEAFIK 162 (210)
Q Consensus 154 ~~i~~~~~~ 162 (210)
.+++++...
T Consensus 204 ~gl~~L~~~ 212 (358)
T 2rcn_A 204 DGLKPLEEA 212 (358)
T ss_dssp BTHHHHHHH
T ss_pred cCHHHHHHh
Confidence 999887654
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.87 E-value=1e-06 Score=73.07 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=60.4
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCceeEEEEEEEEECCEEEEEEEEecCCcch--hhhhh--------HH
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--FRSIT--------RS 74 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~~ 74 (210)
..+.|+++|.+||||||+.++|....... ...+.............+......+||..|.+. ....+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999997542211 111111000000000011112335789888732 22222 44
Q ss_pred hhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 028303 75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG 118 (210)
Q Consensus 75 ~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~ 118 (210)
++...++.++|+|.++. +......|+..+... +.+++++-
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~ 156 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE 156 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence 55567888999999987 445555666555543 34555544
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.57 E-value=0.00011 Score=60.31 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=22.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
+..-|.|+|++++|||+|+|+|++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 5677899999999999999999863
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.52 E-value=5.6e-05 Score=54.30 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.+++++|++|||||||++.+.+..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999988653
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.43 E-value=0.00037 Score=56.98 Aligned_cols=84 Identities=14% Similarity=0.046 Sum_probs=46.4
Q ss_pred EEEEEEEecCCcchhhh-hhH-----HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEecCCCCCC
Q 028303 54 PIKLQIWDTAGQESFRS-ITR-----SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHR 126 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 126 (210)
.+.+.|+||||...... +.. .....+|.+++|+|+....... .....+.. ..+ .-+|+||.|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~----~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE----ALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc----cCCCeEEEEecCCCCcc
Confidence 35688999999654322 111 1234688999999997653321 22222222 234 3478999997432
Q ss_pred CCCCHHHHHHHHHHcCCeEEEE
Q 028303 127 RAVSKEEGEQFAKENGLLFLEA 148 (210)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~ 148 (210)
. ..+..+....+.|+..+
T Consensus 256 ~----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 256 G----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp C----THHHHHHHHHCCCEEEE
T ss_pred H----HHHHHHHHHHCCCeEEE
Confidence 2 23334555556664444
No 238
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.40 E-value=0.0001 Score=54.04 Aligned_cols=29 Identities=31% Similarity=0.293 Sum_probs=22.2
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
|.......|+|+|++|||||||++.|.+.
T Consensus 1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 1 MSAPKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp ----CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 55555678999999999999999998764
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.37 E-value=0.0001 Score=52.80 Aligned_cols=22 Identities=23% Similarity=0.529 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5799999999999999999864
No 240
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.36 E-value=0.00012 Score=53.44 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=23.5
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHhCC
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
|.......|+|+|++||||||+++.|.+..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 555555679999999999999999998764
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.35 E-value=4.7e-05 Score=59.43 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|+|||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 68999999999999999998754
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.34 E-value=0.00011 Score=53.50 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++|+|++|||||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999863
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.31 E-value=0.00016 Score=52.05 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.--.|+|+|++|||||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3356899999999999999999875
No 244
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.30 E-value=0.00018 Score=57.30 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~ 31 (210)
.++|+|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 579999999999999999997654
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.28 E-value=0.00014 Score=52.37 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (210)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999864
No 246
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.27 E-value=0.00015 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-++|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4799999999999999999875
No 247
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.26 E-value=0.00049 Score=53.56 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|+|||||+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 47899999999999999999 54
No 248
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.24 E-value=0.00017 Score=52.88 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
-++|+|++|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998754
No 249
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.24 E-value=0.00018 Score=52.38 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.2
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
..-.|+|+|++|||||||++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3356899999999999999999754
No 250
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.20 E-value=0.0002 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
-++|+|++|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998754
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.18 E-value=0.00021 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|||||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999998753
No 252
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.17 E-value=0.00023 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|+.|||||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57999999999999999998765
No 253
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.17 E-value=0.00018 Score=51.14 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 028303 8 KYIIIGDTGVGKSCLLLQFT 27 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~ 27 (210)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 254
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.17 E-value=0.00098 Score=54.31 Aligned_cols=85 Identities=21% Similarity=0.106 Sum_probs=47.7
Q ss_pred EEEEEEecCCcchhhh-hhH-----HhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303 55 IKLQIWDTAGQESFRS-ITR-----SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (210)
+.+.|+||||...... +.. ...-.+|.+++|+|+..... .......+.... + ..-+|+||.|....
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~~l--~-i~GVIlTKlD~~~~-- 252 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDEKV--G-VTGLVLTKLDGDAR-- 252 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHHT--C-CCEEEEESGGGCSS--
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHhcC--C-ceEEEEeCcCCccc--
Confidence 4678999999643321 111 11235889999999875422 222222222211 1 24678999996422
Q ss_pred CCHHHHHHHHHHcCCeEEEEe
Q 028303 129 VSKEEGEQFAKENGLLFLEAS 149 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s 149 (210)
.-.+.......+.|+..+.
T Consensus 253 --~g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 253 --GGAALSARHVTGKPIYFAG 271 (425)
T ss_dssp --CHHHHHHHHHHCCCEEEEE
T ss_pred --HHHHHHHHHHHCCCEEEEe
Confidence 2234555666788866665
No 255
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.13 E-value=0.00031 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
--|+|+|++|+|||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35789999999999999999864
No 256
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.12 E-value=0.00025 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998764
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.10 E-value=0.00025 Score=51.96 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=21.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
....|+|+|++|||||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999998764
No 258
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.10 E-value=0.0003 Score=51.61 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
--|+|+|++|||||||++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358899999999999999998763
No 259
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.06 E-value=0.00029 Score=52.40 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998763
No 260
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.05 E-value=0.00052 Score=48.64 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
...|+|+|++||||||+.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457899999999999999998753
No 261
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.04 E-value=0.00035 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.03 E-value=0.00038 Score=49.17 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
..|+|+|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 263
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.03 E-value=0.00038 Score=50.08 Aligned_cols=21 Identities=43% Similarity=0.635 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (210)
.++|+|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999985
No 264
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.03 E-value=0.00039 Score=50.19 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (210)
|+|+||+|+|||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 265
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.00 E-value=0.00038 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998763
No 266
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.00 E-value=0.00037 Score=53.52 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998764
No 267
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.00 E-value=0.00037 Score=53.12 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|||||||++.+.+..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998764
No 268
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.97 E-value=0.00054 Score=49.15 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=23.0
Q ss_pred CCCceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.......|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3334568999999999999999998764
No 269
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.97 E-value=0.00045 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.-|+|+|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999764
No 270
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.97 E-value=0.00043 Score=50.13 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4799999999999999998764
No 271
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.96 E-value=0.00041 Score=52.75 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 272
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.96 E-value=0.00045 Score=51.83 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++|+|++|||||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 273
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.95 E-value=0.00052 Score=50.73 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
..|+|+|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 274
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.95 E-value=0.00041 Score=53.00 Aligned_cols=23 Identities=43% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|||||||++.+.+..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999764
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.94 E-value=0.00049 Score=48.41 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCHHHHHHHH
Q 028303 7 FKYIIIGDTGVGKSCLLLQF 26 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l 26 (210)
+.|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 276
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.94 E-value=0.00045 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|||||||++.+.+..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999998763
No 277
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.94 E-value=0.00073 Score=48.42 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=23.3
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHh
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
|+......|+|.|++||||||+.+.|..
T Consensus 1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 5555456899999999999999999864
No 278
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.94 E-value=0.0005 Score=51.79 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998763
No 279
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.94 E-value=0.00051 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998763
No 280
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.93 E-value=0.00046 Score=51.91 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998763
No 281
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.93 E-value=0.00051 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|||||||++.+.+..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998763
No 282
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.92 E-value=0.00047 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|||||||++.+.+..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 283
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.92 E-value=0.00051 Score=51.98 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++|+|++|||||||++.+.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999975
No 284
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.92 E-value=0.00048 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998764
No 285
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.91 E-value=0.00057 Score=51.39 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 028303 7 FKYIIIGDTGVGKSCLLLQFT 27 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~ 27 (210)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 286
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.90 E-value=0.00055 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++|+|++|||||||++.+.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999975
No 287
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.90 E-value=0.00062 Score=47.89 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.|+|+|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 288
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.89 E-value=0.00056 Score=52.10 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++|+|++|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999998764
No 289
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.88 E-value=0.00074 Score=47.88 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
..|+|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 290
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.88 E-value=0.00038 Score=51.18 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++++|++|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999876
No 291
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.88 E-value=0.00058 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|||||||++.+.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998764
No 292
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.87 E-value=0.00059 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|||||||++.+.+..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47999999999999999999753
No 293
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.87 E-value=0.0005 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.-.|+|+|++||||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998754
No 294
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.87 E-value=0.00059 Score=50.08 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 295
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.85 E-value=0.00065 Score=52.90 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999999865
No 296
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.85 E-value=0.00068 Score=49.58 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=21.7
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
.....|+|.|.+||||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999875
No 297
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.85 E-value=0.00057 Score=52.36 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|||||||++.+.+..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 298
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.84 E-value=0.00059 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 299
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.84 E-value=0.00064 Score=49.96 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
No 300
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.84 E-value=0.00068 Score=49.29 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 301
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.83 E-value=0.00061 Score=52.05 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998763
No 302
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.81 E-value=0.00066 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
No 303
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.81 E-value=0.00079 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 304
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.80 E-value=0.00089 Score=48.77 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
+.|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 305
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.80 E-value=0.00074 Score=49.08 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
..|+|+|++||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998754
No 306
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.78 E-value=0.00082 Score=49.32 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
+.|+|+|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 307
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.78 E-value=0.00079 Score=51.34 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 308
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.77 E-value=0.00084 Score=47.61 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
..|+|.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999864
No 309
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.77 E-value=0.00076 Score=49.81 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
-++|+|++|||||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998743
No 310
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.77 E-value=0.00079 Score=50.37 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 028303 8 KYIIIGDTGVGKSCLLLQFT 27 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~ 27 (210)
-++|+|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 311
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.77 E-value=0.00086 Score=48.54 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (210)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999975
No 312
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.76 E-value=0.00078 Score=52.68 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=21.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
...-|+|+|++|||||||++.|.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 3467899999999999999998864
No 313
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.76 E-value=0.00099 Score=50.08 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
....|+|+|++|||||||++.|.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998763
No 314
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.74 E-value=0.00049 Score=51.20 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=15.0
Q ss_pred EEEEEcCCCCCHHHHHHHHH-hC
Q 028303 8 KYIIIGDTGVGKSCLLLQFT-DK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~-~~ 29 (210)
-++|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 64
No 315
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.73 E-value=0.0012 Score=47.10 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
...|+|+|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999874
No 316
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.73 E-value=0.00099 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~ 31 (210)
.++++|++|||||||++.|.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 478999999999999999997654
No 317
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.73 E-value=0.0011 Score=47.50 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
..|+|.|++||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 318
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.71 E-value=0.00099 Score=47.52 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.-++++|++|+|||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45899999999999999999864
No 319
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.70 E-value=0.00088 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999999764
No 320
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.70 E-value=0.0013 Score=47.70 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
...|+|.|++||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999865
No 321
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.69 E-value=0.00099 Score=48.92 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.68 E-value=0.0014 Score=47.74 Aligned_cols=24 Identities=25% Similarity=0.120 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
...|+|.|++||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 367999999999999999999753
No 323
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.67 E-value=0.00098 Score=51.57 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998763
No 324
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.66 E-value=0.0016 Score=47.42 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
....|+|+|++||||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4467999999999999999999864
No 325
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.64 E-value=0.0011 Score=52.82 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
-++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999999764
No 326
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.64 E-value=0.0009 Score=53.44 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.-+++|+|++|||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999999998763
No 327
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.64 E-value=0.0041 Score=42.58 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 45899999999999999887643
No 328
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.64 E-value=0.0015 Score=49.16 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
..+.|+|+|++||||||+.++|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999964
No 329
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.64 E-value=0.0014 Score=46.92 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 330
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.64 E-value=0.0011 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
-++|+|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 36899999999999999998764
No 331
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.64 E-value=0.0012 Score=47.16 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 332
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.62 E-value=0.0011 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 36899999999999999998764
No 333
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.62 E-value=0.0013 Score=46.87 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999864
No 334
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.62 E-value=0.00069 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++|+|++|||||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999999865
No 335
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.62 E-value=0.0011 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 36899999999999999999764
No 336
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.61 E-value=0.0012 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999998764
No 337
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.61 E-value=0.00058 Score=48.62 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++|+|++|||||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.60 E-value=0.0019 Score=46.88 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
....|+|.|++||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999874
No 339
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.60 E-value=0.0012 Score=50.61 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++++|++|+|||+|++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999874
No 340
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.59 E-value=0.0014 Score=45.92 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (210)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999875
No 341
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.57 E-value=0.0014 Score=48.23 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
.+.|+|+|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 342
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.57 E-value=0.0012 Score=52.53 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.|+|+|++|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999998754
No 343
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.57 E-value=0.0014 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
..|+++|++||||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 344
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.56 E-value=0.0013 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 36899999999999999999764
No 345
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.56 E-value=0.0013 Score=52.65 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 36899999999999999998764
No 346
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.56 E-value=0.002 Score=46.83 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=21.0
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
....|+|+|++|||||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 347
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.55 E-value=0.0014 Score=46.48 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
+|+|+|++||||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998643
No 348
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.54 E-value=0.0016 Score=49.16 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=21.6
Q ss_pred CCceEEEEEEcCCCCCHHHHHHHHHh
Q 028303 3 YDYLFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
....+.|+|.|++||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998865
No 349
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.53 E-value=0.0018 Score=46.35 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 350
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.52 E-value=0.0021 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=21.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
..+-|+|+|++|||||||++.|.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999988654
No 351
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.51 E-value=0.0017 Score=47.14 Aligned_cols=23 Identities=17% Similarity=0.550 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
.+.|+|+|++||||||+.+.|..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 352
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.50 E-value=0.0015 Score=50.86 Aligned_cols=84 Identities=13% Similarity=0.014 Sum_probs=46.0
Q ss_pred EEEEEecCCcchhhh------------hhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCC
Q 028303 56 KLQIWDTAGQESFRS------------ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123 (210)
Q Consensus 56 ~~~i~D~~G~~~~~~------------~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 123 (210)
.+.+.|++|...... +.......++.+++++|+.......+ ....+.... + ..++++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~---~~~~~~~~~--~-~t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLE---QAKKFHEAV--G-LTGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHH---HHHHHHHHH--C-CSEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHH---HHHHHHHHc--C-CcEEEEECCcc
Confidence 356889999532211 11122345778889999876543222 222222221 2 34688899986
Q ss_pred CCCCCCCHHHHHHHHHHcCCeEEEEe
Q 028303 124 AHRRAVSKEEGEQFAKENGLLFLEAS 149 (210)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (210)
.... -.+.......+.|+.++.
T Consensus 260 ~a~g----g~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 TAKG----GVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp SCCC----TTHHHHHHHHCCCEEEEE
T ss_pred cccc----cHHHHHHHHHCCCeEEEe
Confidence 4321 223445556678876665
No 353
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.49 E-value=0.0017 Score=48.07 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (210)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 354
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.49 E-value=0.0016 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
--++++|++||||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 355
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.49 E-value=0.0015 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
...|+|+|++|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999864
No 356
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.48 E-value=0.0016 Score=48.18 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
...|+|+|++||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 357
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.48 E-value=0.002 Score=49.78 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
....|+|.|++||||||+.+.|...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999753
No 358
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.48 E-value=0.0022 Score=47.13 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
.+.|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999975
No 359
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.48 E-value=0.001 Score=46.19 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|+|||+|++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998643
No 360
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.47 E-value=0.0017 Score=48.93 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|+|||+|++.+.+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998653
No 361
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.46 E-value=0.002 Score=48.67 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHH
Q 028303 7 FKYIIIGDTGVGKSCLLLQFT 27 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~ 27 (210)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 362
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.44 E-value=0.0011 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 46899999999999999998764
No 363
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.43 E-value=0.0018 Score=48.95 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (210)
.|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 579999999999999999864
No 364
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.43 E-value=0.0017 Score=52.37 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++|+|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999875
No 365
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.42 E-value=0.0016 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++|+|++|||||||++.+.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999965
No 366
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.42 E-value=0.0019 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
=.++|+|++|||||||++.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999763
No 367
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.41 E-value=0.0026 Score=45.97 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=22.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
....|+|+|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999865
No 368
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.39 E-value=0.0021 Score=46.02 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (210)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 369
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.38 E-value=0.0016 Score=51.38 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|||||||++.+.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 370
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.38 E-value=0.0021 Score=46.19 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
...|+|+|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 371
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.38 E-value=0.0028 Score=48.97 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHh
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
....|+|+|++|||||||++.|..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988764
No 372
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.38 E-value=0.0022 Score=46.09 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-|+|.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 373
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.37 E-value=0.0017 Score=47.85 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 374
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.36 E-value=0.0025 Score=45.21 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988754
No 375
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.35 E-value=0.003 Score=45.17 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
...|+|+|.+||||||+.+.|...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467899999999999999998653
No 376
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.35 E-value=0.0022 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
.+.|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 377
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.34 E-value=0.0024 Score=45.23 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
..+.++|++|||||||+.+|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998753
No 378
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.33 E-value=0.002 Score=52.37 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.|+|+|++|||||||++.+.+..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999998753
No 379
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.33 E-value=0.0023 Score=45.52 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (210)
-.+|+|++|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999865
No 380
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.31 E-value=0.0026 Score=45.77 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
..|+|+|++||||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998753
No 381
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.30 E-value=0.001 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999999764
No 382
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.29 E-value=0.0026 Score=47.04 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (210)
|+|+|+|||||+|...+|...
T Consensus 32 I~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998743
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.29 E-value=0.0026 Score=45.15 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-..|+|+|.+||||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998753
No 384
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.28 E-value=0.0023 Score=50.39 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999865
No 385
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.28 E-value=0.0025 Score=46.95 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-++|+|++|+|||||++.+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998743
No 386
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.27 E-value=0.0032 Score=48.12 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|+|||||++.+.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 48999999999999999998653
No 387
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.26 E-value=0.0017 Score=48.33 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-.-|+|.|+.||||||+++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 357899999999999999999875
No 388
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.26 E-value=0.0028 Score=44.56 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (210)
.|+|.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 389
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.26 E-value=0.0032 Score=47.78 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 390
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.26 E-value=0.0032 Score=45.85 Aligned_cols=23 Identities=17% Similarity=-0.010 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999999874
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.26 E-value=0.00096 Score=48.76 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (210)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 392
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.25 E-value=0.0021 Score=48.54 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.6
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
....|+++|++||||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998754
No 393
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.24 E-value=0.003 Score=46.97 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
...|+|+|++||||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998643
No 394
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.24 E-value=0.0026 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
-.|+++|++||||||+++.|.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4689999999999999999865
No 395
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.22 E-value=0.0024 Score=53.28 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|||||||++.+.+..
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998754
No 396
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.20 E-value=0.01 Score=48.63 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=20.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHH
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFT 27 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~ 27 (210)
.+..-|.|+|+.++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 456778899999999999999654
No 397
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.20 E-value=0.0031 Score=44.96 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (210)
.|+|+|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 398
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.19 E-value=0.0036 Score=43.91 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
.-.|+|.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999864
No 399
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0026 Score=52.38 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++|+|++|||||||++.|.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999765
No 400
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.15 E-value=0.003 Score=52.31 Aligned_cols=92 Identities=16% Similarity=0.066 Sum_probs=49.1
Q ss_pred EEEEEEecCCcchhhhh-------hHHhh-----ccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCC
Q 028303 55 IKLQIWDTAGQESFRSI-------TRSYY-----RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~-------~~~~~-----~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (210)
+.+.|+||+|....... ..... ...+-+++|+|++.+.... .....+.... + ...+|+||.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al---~~ak~f~~~~--~-itgvIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV---SQAKLFHEAV--G-LTGITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH---HHHHHHHHHT--C-CSEEEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH---HHHHHHHhhc--C-CCEEEEEcCC
Confidence 34678999996422221 11111 1356889999987653221 2222222221 2 2357899999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 028303 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 158 (210)
-.. ..-.+..++...+.++.++. +|+++++
T Consensus 450 ~ta----kgG~~lsi~~~~~~PI~fig--~Ge~vdD 479 (503)
T 2yhs_A 450 GTA----KGGVIFSVADQFGIPIRYIG--VGERIED 479 (503)
T ss_dssp GCS----CCTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred Ccc----cccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence 532 12335566666788876654 4444443
No 401
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.15 E-value=0.0044 Score=44.86 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=22.5
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.+.+.|+|+|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35688999999999999999998754
No 402
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.14 E-value=0.0034 Score=46.94 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
.+.|++.|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999874
No 403
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.13 E-value=0.0034 Score=49.81 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
+++++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999874
No 404
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.10 E-value=0.0023 Score=50.12 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhCC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.--++|+|+.|||||||++.+.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4457899999999999999999764
No 405
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.09 E-value=0.0033 Score=48.53 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-++|+|++|+|||||++.+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 406
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.09 E-value=0.004 Score=43.12 Aligned_cols=19 Identities=47% Similarity=0.677 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 028303 9 YIIIGDTGVGKSCLLLQFT 27 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (210)
.+|+|++|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999875
No 407
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.08 E-value=0.0037 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 408
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.07 E-value=0.0021 Score=45.66 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=16.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
...|+|.|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999743
No 409
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.07 E-value=0.0033 Score=47.48 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
-.|+|+|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
No 410
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.07 E-value=0.0041 Score=46.89 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.-.+++.|++|+|||+|++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346899999999999999999764
No 411
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.05 E-value=0.003 Score=44.64 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999988754
No 412
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.05 E-value=0.0039 Score=45.61 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
...|+|+|++||||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
No 413
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.03 E-value=0.0034 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
-++++|++|||||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46899999999999999999864
No 414
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.02 E-value=0.0044 Score=45.78 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998753
No 415
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.02 E-value=0.0041 Score=46.20 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 416
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.01 E-value=0.0041 Score=46.27 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-.-|++.|++||||||+++.|...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467899999999999999999764
No 417
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.00 E-value=0.0042 Score=45.40 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (210)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 418
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.99 E-value=0.004 Score=51.54 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (210)
.++|+|++|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999875
No 419
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.95 E-value=0.0051 Score=44.46 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-.+++.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999988754
No 420
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.94 E-value=0.048 Score=42.37 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (210)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 456677999999999999754
No 421
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.0042 Score=52.97 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~ 31 (210)
.++|+|++|+|||||++.+.+...
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 479999999999999999997643
No 422
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.93 E-value=0.0052 Score=47.18 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
.+.|+|.|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999873
No 423
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.91 E-value=0.023 Score=40.91 Aligned_cols=85 Identities=9% Similarity=-0.017 Sum_probs=56.0
Q ss_pred EEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEecCCCCCCCCCCHH
Q 028303 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRRAVSKE 132 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~ 132 (210)
+.+.++|+|+.. .......+..+|.+++++..+... ..+......+.... ..+.++.+|+|++|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 567899999865 344556677899999999887654 55666666665443 245678999999995321 224
Q ss_pred HHHHHHHHcCCeEE
Q 028303 133 EGEQFAKENGLLFL 146 (210)
Q Consensus 133 ~~~~~~~~~~~~~~ 146 (210)
++.+.+...+.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 45555555555443
No 424
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.89 E-value=0.0047 Score=49.55 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 425
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.85 E-value=0.0046 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 58999999999999999998653
No 426
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.85 E-value=0.0062 Score=46.97 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 427
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.84 E-value=0.0053 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
+++++|++|||||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999764
No 428
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.79 E-value=0.0053 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 429
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.76 E-value=0.0066 Score=45.20 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=20.3
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
...++++|+|++||||||+..+|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998864
No 430
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.75 E-value=0.0056 Score=52.23 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 47999999999999999998864
No 431
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.73 E-value=0.0062 Score=44.75 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-++|.|++|+|||+|++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998653
No 432
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.73 E-value=0.0059 Score=48.74 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 028303 9 YIIIGDTGVGKSCLLLQFT 27 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (210)
.+|+|++|||||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999976
No 433
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.73 E-value=0.0065 Score=41.65 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
..|++.|++|+|||++.+.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999997653
No 434
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.73 E-value=0.0064 Score=51.13 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~ 31 (210)
.++|+|++|||||||++.+.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998643
No 435
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.72 E-value=0.006 Score=46.93 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.-.+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357899999999999999999864
No 436
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.71 E-value=0.0052 Score=44.93 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.+++.||||+|||+++..+...
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999998888753
No 437
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.70 E-value=0.0071 Score=46.70 Aligned_cols=24 Identities=29% Similarity=0.164 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
...+++.|+||+|||+|++.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356788899999999999998754
No 438
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.70 E-value=0.0067 Score=43.99 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988753
No 439
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.69 E-value=0.0069 Score=46.25 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999999764
No 440
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.69 E-value=0.0057 Score=51.43 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~ 31 (210)
.++|+|++|||||||++.+.+...
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999997643
No 441
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.67 E-value=0.0068 Score=51.71 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~ 31 (210)
.++|+|++|+|||||++.+.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998643
No 442
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.67 E-value=0.0033 Score=48.60 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=18.4
Q ss_pred CCCCceEEEEEEcCCCCCHHHHHHHHHh
Q 028303 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
|+... +.|+|.|++||||||+.+.|..
T Consensus 1 Ms~~~-~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 1 MSKKH-PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp -CTTS-CEEEEESCC---CCTHHHHHHH
T ss_pred CCCCc-eEEEEECCCCCCHHHHHHHHHH
Confidence 55433 5699999999999999998864
No 443
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.67 E-value=0.008 Score=45.17 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.-.+++.|++|+|||++++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999763
No 444
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.66 E-value=0.0065 Score=46.47 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (210)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 445
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.64 E-value=0.0067 Score=46.99 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-.|++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 45899999999999999999864
No 446
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.62 E-value=0.01 Score=42.94 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (210)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 447
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.53 E-value=0.0092 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
...|+|+|++||||||+.+.|..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998875
No 448
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.52 E-value=0.0048 Score=52.51 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++++|++|||||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 449
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.0078 Score=51.31 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDKRF 31 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~~~ 31 (210)
++|+|++|||||||++.+.+...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999998643
No 450
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.49 E-value=0.0083 Score=43.62 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
..|+++|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998653
No 451
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.49 E-value=0.0054 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++++|++|||||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999998653
No 452
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.49 E-value=0.0081 Score=46.89 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-.+++.|++|+|||+|++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998754
No 453
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.47 E-value=0.037 Score=43.27 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
..|+|.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999754
No 454
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.46 E-value=0.0081 Score=48.83 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.-|+|+|++||||||+.++|...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999753
No 455
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.45 E-value=0.0085 Score=46.41 Aligned_cols=85 Identities=12% Similarity=0.024 Sum_probs=47.8
Q ss_pred EEEEEEecCCcchhhhh----hHHhhc--cccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCC
Q 028303 55 IKLQIWDTAGQESFRSI----TRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (210)
..+.|+||+|....... ....+. ..+.+++|+|++.. ...+..+...+.. .+ ..-+|+||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccc--
Confidence 46789999996644321 112222 36788999988753 2233333222221 12 23466799997432
Q ss_pred CCHHHHHHHHHHcCCeEEEEe
Q 028303 129 VSKEEGEQFAKENGLLFLEAS 149 (210)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s 149 (210)
...+...+...++++..+.
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2356667777788765554
No 456
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.45 E-value=0.0046 Score=52.46 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++++|++|||||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5799999999999999988865
No 457
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.0091 Score=48.66 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.5
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
+.-.|++.||||+|||+|++++.+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3446999999999999999999864
No 458
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.41 E-value=0.0099 Score=45.89 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHh
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (210)
..+++.|++|+|||++++.+..
T Consensus 68 ~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999986654
No 459
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.0093 Score=48.67 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
+.-.|++.||||+|||+|++++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 4457999999999999999999864
No 460
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.37 E-value=0.013 Score=44.40 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
....+++.|++|+|||+|++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999999764
No 461
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.36 E-value=0.0078 Score=47.44 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.+++.|++|+||||+++.+.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998773
No 462
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.34 E-value=0.0062 Score=51.77 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++++|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998865
No 463
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.34 E-value=0.011 Score=43.08 Aligned_cols=19 Identities=47% Similarity=0.677 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 028303 9 YIIIGDTGVGKSCLLLQFT 27 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (210)
.+|+|++|+||||++..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999874
No 464
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.34 E-value=0.01 Score=44.10 Aligned_cols=21 Identities=29% Similarity=0.416 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 028303 8 KYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (210)
-++|+|++|+|||+|+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999877753
No 465
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.34 E-value=0.0096 Score=47.19 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-.++|.|++|+|||+|++.+...
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 466
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.31 E-value=0.011 Score=46.08 Aligned_cols=86 Identities=21% Similarity=0.133 Sum_probs=48.1
Q ss_pred EEEEEEecCCcchhhhhh-------HHh-----hccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCC
Q 028303 55 IKLQIWDTAGQESFRSIT-------RSY-----YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (210)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~-------~~~-----~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (210)
+.+.++||||........ ... ...++.+++|+|+.... +.+.. ...+.... + ..-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence 357899999963222110 111 13478899999987432 22222 12222221 2 2356789999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCeEEEEec
Q 028303 123 LAHRRAVSKEEGEQFAKENGLLFLEASA 150 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa 150 (210)
....- -.+.......+.|+.++..
T Consensus 261 ~~~~g----G~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTAKG----GITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCSCT----THHHHHHHHHCCCEEEEEC
T ss_pred Cccch----HHHHHHHHHHCCCEEEEeC
Confidence 64322 2366777778888777754
No 467
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.30 E-value=0.01 Score=46.70 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.+++.|++|+||||+++.+.+.-
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999987653
No 468
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.27 E-value=0.012 Score=46.05 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
..|+|+|++|||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998753
No 469
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.26 E-value=0.01 Score=47.02 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
-+.|+|++|+|||||++.+....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998753
No 470
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.25 E-value=0.011 Score=45.43 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
..+++.|++|+|||++++.+...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
No 471
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.24 E-value=0.011 Score=46.31 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-.|++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999999864
No 472
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.22 E-value=0.011 Score=45.54 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999998754
No 473
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.011 Score=48.26 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
+.-.|++.||||+|||+|++++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4467999999999999999999864
No 474
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.21 E-value=0.0015 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDKRF 31 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~~~ 31 (210)
++|+|++|||||||++.+.+...
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 36789999999999999876543
No 475
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.20 E-value=0.014 Score=46.20 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
..+|+++|++|+||||+.+.|..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 46799999999999999987654
No 476
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.19 E-value=0.013 Score=46.64 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|.|++|+|||+|++.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998653
No 477
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.18 E-value=0.012 Score=46.39 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.-|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999998753
No 478
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.17 E-value=0.013 Score=45.81 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
...|++.|++|+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999754
No 479
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.012 Score=47.46 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
+.-.|++.||||+|||.|++.+.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 4457999999999999999999864
No 480
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.14 E-value=0.017 Score=42.75 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=21.4
Q ss_pred CceEEEEEEcCCCCCHHHHHHHHHh
Q 028303 4 DYLFKYIIIGDTGVGKSCLLLQFTD 28 (210)
Q Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~ 28 (210)
....-|++.|..||||||+++.|..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999864
No 481
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.14 E-value=0.014 Score=46.03 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-|+|+|++|||||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 482
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.13 E-value=0.19 Score=37.07 Aligned_cols=91 Identities=12% Similarity=0.081 Sum_probs=59.3
Q ss_pred EEEEEEEecCCcchhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHHH
Q 028303 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 133 (210)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 133 (210)
.+.+.++|+|+.-. ......+..+|.+++|+..+ ..+...+...+..+.........+.+|+|+++... ....++
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~~ 192 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSDE 192 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHHH
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHHH
Confidence 35688999987542 34556678899999999875 45666777777766554333456789999998643 233333
Q ss_pred HHHHHHHcCCeEEEEecCC
Q 028303 134 GEQFAKENGLLFLEASART 152 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~sa~~ 152 (210)
+ ....+.+++..-..+
T Consensus 193 ~---~~~~~~~v~~~ip~~ 208 (245)
T 3ea0_A 193 I---EKVIGRPISKRIPQD 208 (245)
T ss_dssp H---HHHHTSCEEEEECCC
T ss_pred H---HHHhCCCeEEECCCC
Confidence 3 334567776654444
No 483
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.13 E-value=0.12 Score=37.59 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=55.6
Q ss_pred EEEEEEEecCCc-chhhhhhHHhhccccEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028303 54 PIKLQIWDTAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 132 (210)
Q Consensus 54 ~~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~V~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 132 (210)
.+.+.++|+|+. ... .....+..+|.+|+++..+. .+...+...+..+.... +.++.+|+|+.|.... ....
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~ 139 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGD 139 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHH
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHH
Confidence 356789999986 432 34456778999999998763 45566666666665532 4678899999986430 1134
Q ss_pred HHHHHHHHcCCeEE
Q 028303 133 EGEQFAKENGLLFL 146 (210)
Q Consensus 133 ~~~~~~~~~~~~~~ 146 (210)
++.+.+...+.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 55555555565543
No 484
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.12 E-value=0.014 Score=45.49 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.-|+|+||+|||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35789999999999999999754
No 485
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.10 E-value=0.014 Score=54.35 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
+|+++|++|||||||++.|.+-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7899999999999999999854
No 486
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.06 E-value=0.015 Score=52.09 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~ 31 (210)
.++|+|++|||||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999996543
No 487
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.98 E-value=0.01 Score=44.99 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
....|+|.|..||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999988754
No 488
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.98 E-value=0.015 Score=45.72 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998754
No 489
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.95 E-value=0.02 Score=40.64 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhCC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.-|++.|++|+||||+...|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 468999999999999999998753
No 490
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.94 E-value=0.0067 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-.+++.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34889999999999999998764
No 491
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.94 E-value=0.017 Score=41.28 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028303 9 YIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (210)
++|+|.++||||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999854
No 492
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.92 E-value=0.013 Score=46.40 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998754
No 493
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.91 E-value=0.0096 Score=50.16 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-..|+|+|++|||||||++.|.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 357899999999999999998865
No 494
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.90 E-value=0.0081 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (210)
.++|+|++|||||||++.|.+..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999764
No 495
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.89 E-value=0.016 Score=47.11 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHHhC
Q 028303 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
+.-.|++.||||+|||+|++++.+.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHH
Confidence 3457999999999999999999864
No 496
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.89 E-value=0.015 Score=46.00 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++|.|++|+|||+|++.+...
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 497
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.86 E-value=0.021 Score=42.55 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
..|++.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999999764
No 498
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.85 E-value=0.015 Score=48.87 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 028303 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (210)
.++++|++|+|||||++.+.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998754
No 499
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.84 E-value=0.015 Score=48.63 Aligned_cols=20 Identities=25% Similarity=0.630 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHH--HHh
Q 028303 9 YIIIGDTGVGKSCLLLQ--FTD 28 (210)
Q Consensus 9 i~v~G~~~~GKSsli~~--l~~ 28 (210)
++|+|++|||||||++. +.+
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~G 63 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNG 63 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
No 500
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.83 E-value=0.017 Score=45.88 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhC
Q 028303 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
Q Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (210)
-.|+|.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999864
Done!