BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028304
(210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99JH1|RP25L_MOUSE Ribonuclease P protein subunit p25-like protein OS=Mus musculus
GN=Rpp25l PE=2 SV=1
Length = 163
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 9/136 (6%)
Query: 1 MDRYQRV-------EKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAM 53
M++Y+R P + P D E+R+ ++R+ + A+ L+ + +VF
Sbjct: 1 MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGS 60
Query: 54 GRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPL--EEGLLPLETTRHVSMITIT 111
GRA K V+ E++KRR+ GLHQ T + D+W P + GL PL RHV + +
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120
Query: 112 LSKKELNRSSVGYQPP 127
LS+ L+ S GYQPP
Sbjct: 121 LSRDPLDPSECGYQPP 136
>sp|Q8N5L8|RP25L_HUMAN Ribonuclease P protein subunit p25-like protein OS=Homo sapiens
GN=RPP25L PE=1 SV=1
Length = 163
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 7 VEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVEL 66
P + P D E+R+ ++R+ + A+ L+ + +VF GRA K V+ E+
Sbjct: 14 APSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEI 73
Query: 67 IKRRIVGLHQNTVIGSTDITDTWEPL--EEGLLPLETTRHVSMITITLSKKELNRSSVGY 124
+KRR+ GLHQ T + D+W P + GL PL RHV + + LS+ L+ + GY
Sbjct: 74 VKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGY 133
Query: 125 QPP 127
QPP
Sbjct: 134 QPP 136
>sp|Q2KIR4|RP25L_BOVIN Ribonuclease P protein subunit p25-like protein OS=Bos taurus
GN=RPP25L PE=2 SV=1
Length = 163
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 10 PKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKR 69
P + P D E+R+ + ++R+ + A+ L+ + +VF GRA K V+ E++KR
Sbjct: 17 PMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76
Query: 70 RIVGLHQNTVIGSTDITDTWEPL--EEGLLPLETTRHVSMITITLSKKELNRSSVGYQPP 127
R+ GL+Q T + D+W P + GL PL HV + + LS+ L+ + GYQPP
Sbjct: 77 RVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVLLSRDPLDPNEYGYQPP 136
>sp|Q9BUL9|RPP25_HUMAN Ribonuclease P protein subunit p25 OS=Homo sapiens GN=RPP25 PE=1
SV=1
Length = 199
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 21 IRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVI 80
+R+ ++R+ + +A + + + IVF GRA KTVT E++KRR+ GLHQ T +
Sbjct: 38 MRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97
Query: 81 GSTDITDTWEPLEEG----------LLPLETTRHVSMITITLSKKELNRSSVGYQPPLP 129
+ + W+ L G L ++V + I LSK L+ GYQPP P
Sbjct: 98 RYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNP 156
>sp|Q5PPN2|RPP25_RAT Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25
PE=2 SV=1
Length = 199
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 21 IRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVI 80
+R+ ++R+ + +A + + + IVF GRA KTVT E++KRR+ GLHQ T +
Sbjct: 38 MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97
Query: 81 GSTDITDTWEPL----------EEGLLPLETTRHVSMITITLSKKELNRSSVGYQPP 127
+ + W+ L + L ++V + I LSK L+ +GYQPP
Sbjct: 98 RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154
>sp|Q91WE3|RPP25_MOUSE Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2
SV=1
Length = 199
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 21 IRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVI 80
+R+ ++R+ + +A + + + IVF GRA KTVT E++KRR+ GLHQ T +
Sbjct: 38 MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97
Query: 81 GSTDITDTWEPL----------EEGLLPLETTRHVSMITITLSKKELNRSSVGYQPP 127
+ + W+ L + L ++V + I LSK L+ +GYQPP
Sbjct: 98 RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154
>sp|Q9YAX2|ALBA2_AERPE DNA/RNA-binding protein Alba 2 OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=albA2 PE=1 SV=1
Length = 102
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 20 EIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTV 79
E+RI + M +Y+ +T L E+G+N++V KA GR IN+ V VE++++R +N
Sbjct: 8 EVRIGRKPVM-NYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKR---FAKNIE 63
Query: 80 IGSTDITDTWEPLEEGLLPLETTRHVSMITITLSK 114
I I D+ E + TR VS I I L K
Sbjct: 64 IKDIKI-DSQEIEVQTPEGQTRTRRVSSIEICLEK 97
>sp|P60849|ALBA1_SULSO DNA/RNA-binding protein Alba 1 OS=Sulfolobus solfataricus (strain
ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=albA1 PE=1
SV=2
Length = 97
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 14 TPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRR 70
TP N + I + M +Y+ A+TLL + G +EIV KA GRAI+K V VE+++ R
Sbjct: 5 TPTPSNVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNR 59
>sp|P60848|ALBA1_SULSH DNA/RNA-binding protein Alba 1 OS=Sulfolobus shibatae GN=albA1
PE=1 SV=2
Length = 97
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 14 TPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRR 70
TP N + I + M +Y+ A+TLL + G +EIV KA GRAI+K V VE+++ R
Sbjct: 5 TPTPSNVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNR 59
>sp|P60851|ALBA_NANEQ DNA/RNA-binding protein Alba OS=Nanoarchaeum equitans (strain
Kin4-M) GN=albA PE=3 SV=1
Length = 90
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 34 TYAMTLLQE--RGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEP 91
Y M ++ + +G+NE+V KA GR I++ V + E +++R + G D+ D
Sbjct: 13 NYVMAVVMQFMQGANEVVIKARGRNISRAVDVAERVRKRFLA-------GQVDVGDIKID 65
Query: 92 LEEGLLPLE-TTRHVSMITITLSKK 115
EE + P R VS I I L KK
Sbjct: 66 SEEVVDPATGQKRTVSTIEIKLVKK 90
>sp|Q971T8|ALBA1_SULTO DNA/RNA-binding protein Alba 1 OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=albA1 PE=3 SV=1
Length = 99
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 14 TPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRR 70
TP N + + + M +Y+ A+TLL + G +EI+ KA GRAI+K V VE+++ R
Sbjct: 6 TPTPSNVVLVGKKPVM-NYVLAALTLLNQ-GVSEIIIKARGRAISKAVDTVEIVRNR 60
>sp|Q9YAW1|ALBA1_AERPE DNA/RNA-binding protein Alba 1 OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=albA1 PE=3 SV=2
Length = 94
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 31 SYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWE 90
+Y+ A+ LL E G+ E+V KA GR I V VE++K + +N VI +I E
Sbjct: 20 NYVMAALKLLNEEGAPEVVIKARGRNICNAVDTVEMLKNLFI---KNLVIKKVNIYS--E 74
Query: 91 PLEEGLLPLETTRHVSMITITLSK 114
L+ E + VS I I ++K
Sbjct: 75 SLDS-----EGKKKVSAIEIVVAK 93
>sp|A4YHK0|ALBA_METS5 DNA/RNA-binding protein Alba OS=Metallosphaera sedula (strain
ATCC 51363 / DSM 5348) GN=albA PE=3 SV=1
Length = 98
Score = 38.1 bits (87), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 31 SYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRR 70
+Y+ A+TLL + G EI+ KA GRAI+K V VE+++ R
Sbjct: 21 NYVLAALTLLNQ-GVPEIIIKARGRAISKAVDTVEIVRNR 59
>sp|Q4J973|ALBA_SULAC DNA/RNA-binding protein Alba OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=albA PE=3 SV=1
Length = 97
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 31 SYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRR 70
+Y+ A+TLL + G +EI KA GRAI+K V VE+++ R
Sbjct: 20 NYVLAALTLLNQ-GVSEITIKARGRAISKAVDTVEIVRNR 58
>sp|A8A8V6|ALBA_IGNH4 DNA/RNA-binding protein Alba OS=Ignicoccus hospitalis (strain
KIN4/I / DSM 18386 / JCM 14125) GN=albA PE=3 SV=1
Length = 97
Score = 37.0 bits (84), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 12 AETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRR 70
A+ P NE+R+ + M +Y+ +TLL + G + I KA GRAI+K V VE+++ R
Sbjct: 3 AQIP-QSNEVRVGKKPVM-NYVLATLTLLNQ-GVDRIEIKARGRAISKAVDTVEIVRNR 58
>sp|O28323|ALBA2_ARCFU DNA/RNA-binding protein Alba 2 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=albA2 PE=1 SV=1
Length = 89
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 31 SYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRR 70
+Y+ +T L E G++E+V KA GRAI++ V + E+++ R
Sbjct: 15 NYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNR 53
>sp|Q57665|ALBA_METJA DNA/RNA-binding protein Alba OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=albA PE=1 SV=1
Length = 87
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 30 RSYITYAMTLLQERGSN-EIVFKAMGRAINKTVTIVELIKRR 70
+ + Y + +L + SN E++ KA G+AINK V + E+I+ R
Sbjct: 10 KPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNR 51
>sp|Q2NHL8|ALBA_METST DNA/RNA-binding protein Alba OS=Methanosphaera stadtmanae (strain
DSM 3091) GN=albA PE=3 SV=1
Length = 90
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 31 SYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWE 90
+Y+ +T + G E++ KA GRAI++ V + E+++ R + + + S DI+
Sbjct: 16 NYVLAVVTQMNS-GVTEVILKARGRAISRAVDVAEIVRNRFI---SDVDVKSIDISTEEI 71
Query: 91 PLEEGLLPLETTRHVSMITITLSK 114
EG T+ +VS I I LSK
Sbjct: 72 VGNEG-----TSSNVSAIEIRLSK 90
>sp|Q8TXF9|ALBA1_METKA DNA/RNA-binding protein Alba 1 OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=albA1 PE=3
SV=1
Length = 93
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRR 70
+EN + + S+ M +Y+ +T E G+NE+ KA GRAI++ V + E+++ R
Sbjct: 4 EENVVYVGSKPVM-NYVLACITQFNE-GANEVRIKARGRAISRAVDVAEIVRNR 55
>sp|P60850|ALBA_METMP DNA/RNA-binding protein Alba OS=Methanococcus maripaludis (strain
S2 / LL) GN=albA PE=3 SV=1
Length = 89
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 18 ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRR 70
+N + + ++G M +Y+ +T + E++ KA G+AI++ V + E++ +R
Sbjct: 2 DNIVYVGNKGVM-NYVLAVITQFNSENAQEVIVKARGKAISRAVDVEEMVTKR 53
>sp|Q9C5P1|SUVH7_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH7
OS=Arabidopsis thaliana GN=SUVH7 PE=2 SV=1
Length = 693
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 9 KPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIK 68
+PK D N +++TS+G S IT A T E G+ EIV M R + ++
Sbjct: 145 EPKKPKVYDPNSLKVTSRGNFDSEITEAET---ETGNQEIVDSVMMR--------FDAVR 193
Query: 69 RRIVGLHQNTVIGST 83
RR+ ++ I +T
Sbjct: 194 RRLCQINHPEDILTT 208
>sp|Q5KZ06|COBQ_GEOKA Cobyric acid synthase OS=Geobacillus kaustophilus (strain HTA426)
GN=cobQ PE=3 SV=1
Length = 503
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 54/122 (44%), Gaps = 20/122 (16%)
Query: 48 IVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTW---EPLEE----GLLPLE 100
I K G A ++ V++V K R+VGL + I D + PL E GLLP+E
Sbjct: 311 IYMKKRGLA-SRIVSLVNEGKARVVGLCGGYQMLGAVIRDPYGVETPLPEVKGLGLLPIE 369
Query: 101 TTRHVSMITI----TLSKKELNRSSVGYQ------PPLPAEQVKPLIEFDYDGEGSPNGP 150
TT + ITI L+ S GY+ PLP PLIE D EG+ +
Sbjct: 370 TTLERTKITIRTEGMLTWAGERFSVQGYEIHMGRSAPLPG--YAPLIEADGRHEGAKHSD 427
Query: 151 RR 152
R
Sbjct: 428 ER 429
>sp|Q800B9|NOD3B_XENTR Nodal homolog 3-B OS=Xenopus tropicalis GN=nodal3-B PE=1 SV=1
Length = 401
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 113 SKKELNRSSVGYQPPLPAEQVKP-------LIEFDYDGEGS 146
+KKE R VG PP P E++KP ++F G GS
Sbjct: 275 NKKEKTRMDVGTTPPKPVEEIKPKCRKVDMFVDFQKIGWGS 315
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,252,316
Number of Sequences: 539616
Number of extensions: 3493782
Number of successful extensions: 10258
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 10218
Number of HSP's gapped (non-prelim): 51
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)