Query 028304
Match_columns 210
No_of_seqs 142 out of 348
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 15:26:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h9u_A DNA/RNA-binding protein 99.9 3.1E-26 1.1E-30 176.8 13.1 93 18-118 6-101 (102)
2 1nfj_A ALBA, conserved hypothe 99.9 3.6E-25 1.2E-29 166.9 12.5 86 17-114 2-89 (89)
3 2bky_A DNA/RNA-binding protein 99.9 8.9E-25 3E-29 167.2 13.4 89 15-115 6-97 (97)
4 1nh9_A MJA10B, DNA-binding pro 99.9 1E-24 3.4E-29 163.9 11.9 84 18-114 2-87 (87)
5 3toe_A MTH10B, DNA/RNA-binding 99.9 5.3E-23 1.8E-27 155.9 11.9 89 17-115 3-91 (91)
6 2bky_X DNA/RNA-binding protein 99.8 4.5E-21 1.5E-25 144.7 10.7 84 17-115 5-88 (89)
7 1vm0_A Unknown protein; struct 99.8 5.2E-18 1.8E-22 135.8 10.9 91 15-116 17-108 (130)
8 3iab_B Ribonucleases P/MRP pro 99.7 7.8E-16 2.7E-20 124.5 13.8 108 5-113 13-139 (140)
9 3iab_A Ribonucleases P/MRP pro 98.2 1.9E-05 6.6E-10 64.7 12.4 91 20-116 46-146 (158)
10 1b34_A Protein (small nuclear 92.3 0.025 8.4E-07 43.8 0.0 8 103-110 53-60 (119)
11 2pk2_A Cyclin-T1, protein TAT; 57.9 2.1 7.2E-05 38.2 0.0 7 171-177 315-321 (358)
12 2ek0_A Stage V sporulation pro 48.3 80 0.0027 23.3 12.0 51 19-71 2-53 (90)
13 2k9u_B Filamin-binding LIM pro 37.1 14 0.00049 21.4 1.3 14 101-114 6-19 (26)
14 3u5c_h Suppressor protein STM1 28.9 12 0.0004 32.9 0.0 16 153-168 236-251 (273)
15 4h1k_B Nuclear polyadenylated 24.6 37 0.0013 21.4 1.7 10 153-162 14-23 (38)
16 4gqb_C Histone H4 peptide; TIM 23.0 33 0.0011 19.6 1.2 12 151-162 3-14 (26)
17 1i96_V Translation initiation 21.5 2.3E+02 0.008 20.4 6.1 69 20-95 4-75 (89)
No 1
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=99.94 E-value=3.1e-26 Score=176.78 Aligned_cols=93 Identities=35% Similarity=0.543 Sum_probs=85.4
Q ss_pred CCEEEEcCCCchHHHHHHHH-HHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhc-CCce-eEEEEEEEEeeccceeccc
Q 028304 18 ENEIRITSQGRMRSYITYAM-TLLQERGSNEIVFKAMGRAINKTVTIVELIKRRI-VGLH-QNTVIGSTDITDTWEPLEE 94 (210)
Q Consensus 18 ~NeIrVt~k~~irnYV~~A~-~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi-~GLh-Q~t~I~tv~i~d~~eP~eE 94 (210)
+|+|+|++++.+ |||.+|+ .+|++ +.++|+|||+|+||+|||+||||||+|+ +||| |.++|++.++.|+|+ +
T Consensus 6 ~n~I~V~~k~~~-nyV~~a~~~ll~~-g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e---~ 80 (102)
T 2h9u_A 6 APEVRIGRKPVM-NYVLAILTTLMEQ-GTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTP---E 80 (102)
T ss_dssp CCEEECCSSCHH-HHHHHHHHHHTST-TCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECT---T
T ss_pred CCEEEEcCCCHH-HHHHHHHHHHHhC-CCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEecccc---C
Confidence 599999999985 9999999 99995 8999999999999999999999999999 8999 999999999998854 5
Q ss_pred CCCcceeeeeeeEEEEEEecccCC
Q 028304 95 GLLPLETTRHVSMITITLSKKELN 118 (210)
Q Consensus 95 Gl~~l~~~R~VS~I~ItLSk~~LD 118 (210)
|+. ++|+||+|+|+|+++|..
T Consensus 81 g~~---~~r~vS~IeI~Lsk~~~~ 101 (102)
T 2h9u_A 81 GQT---RTRRVSSIEICLEKAGES 101 (102)
T ss_dssp SCE---EEEEEEEEEEEEEECSSC
T ss_pred Ccc---ceeEeeeEEEEEEccCCC
Confidence 643 799999999999998753
No 2
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=99.93 E-value=3.6e-25 Score=166.92 Aligned_cols=86 Identities=31% Similarity=0.588 Sum_probs=78.7
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhc-CCce-eEEEEEEEEeeccceeccc
Q 028304 17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRI-VGLH-QNTVIGSTDITDTWEPLEE 94 (210)
Q Consensus 17 ~~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi-~GLh-Q~t~I~tv~i~d~~eP~eE 94 (210)
++|+|+|++++ +.+||.+|+.+|++ |.++|+|||+|+||+|||+||||||+|+ +||| |.++|+|.++.| +|
T Consensus 2 ~~n~I~V~~k~-v~~yV~~~~~~l~~-g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~-----e~ 74 (89)
T 1nfj_A 2 AEHVVYVGNKP-VMNYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELES-----EQ 74 (89)
T ss_dssp -CEEEECCSSC-HHHHHHHHHHHHHT-TCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCC-----BT
T ss_pred CCCEEEEcCCC-HHHHHHHHHHHHhC-CCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEc-----CC
Confidence 57999999999 66999999999995 8999999999999999999999999999 9999 999999888765 45
Q ss_pred CCCcceeeeeeeEEEEEEec
Q 028304 95 GLLPLETTRHVSMITITLSK 114 (210)
Q Consensus 95 Gl~~l~~~R~VS~I~ItLSk 114 (210)
| .+|+||+|+|+|++
T Consensus 75 g-----~~r~vs~IeI~L~k 89 (89)
T 1nfj_A 75 G-----RRSNVSTIEIVLAK 89 (89)
T ss_dssp T-----BCCEEEEEEEEEEC
T ss_pred C-----cEEEeeEEEEEEEC
Confidence 6 78999999999985
No 3
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=99.92 E-value=8.9e-25 Score=167.23 Aligned_cols=89 Identities=37% Similarity=0.595 Sum_probs=79.6
Q ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcC-C-c-eeEEEEEEEEeecccee
Q 028304 15 PIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIV-G-L-HQNTVIGSTDITDTWEP 91 (210)
Q Consensus 15 p~~~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~-G-L-hQ~t~I~tv~i~d~~eP 91 (210)
+.++|+|+|++++ +.+||.+|+.+|++ |.++|+|||+|+||+|||+||||||+|+. + | ||.++|++.++.|
T Consensus 6 ~~~~n~I~V~~k~-v~~YV~~a~~ll~~-g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~---- 79 (97)
T 2bky_A 6 PTPSNVVLIGKKP-VMNYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTS---- 79 (97)
T ss_dssp ---CCEEECCSSC-HHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEE----
T ss_pred CCCCCEEEEcCcC-HHHHHHHHHHHHhC-CCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEec----
Confidence 5578999999999 78999999999995 89999999999999999999999999994 4 8 8999999999876
Q ss_pred cccCCCcceeeeeeeEEEEEEecc
Q 028304 92 LEEGLLPLETTRHVSMITITLSKK 115 (210)
Q Consensus 92 ~eEGl~~l~~~R~VS~I~ItLSk~ 115 (210)
+|| .+|+||+|+|+|+++
T Consensus 80 -e~G-----~~r~vS~IeI~L~k~ 97 (97)
T 2bky_A 80 -QDG-----RQSRVSTIEIAIRKK 97 (97)
T ss_dssp -TTS-----CEEEEEEEEEEEEEC
T ss_pred -CCC-----cEEEeeEEEEEEEcC
Confidence 456 789999999999974
No 4
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=99.92 E-value=1e-24 Score=163.89 Aligned_cols=84 Identities=31% Similarity=0.562 Sum_probs=73.5
Q ss_pred CCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhc-CCce-eEEEEEEEEeeccceecccC
Q 028304 18 ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRI-VGLH-QNTVIGSTDITDTWEPLEEG 95 (210)
Q Consensus 18 ~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi-~GLh-Q~t~I~tv~i~d~~eP~eEG 95 (210)
+|+|+|+++ ++.+||.+|+.+|++ + ++|+|||+|+||+|||+|||+||+|+ +||| |.++|+|.++.| +||
T Consensus 2 ~n~I~V~~k-~v~~YV~~~~~~l~~-g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~-----e~g 73 (87)
T 1nh9_A 2 DNVVLIGKK-PVMNYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKN-----PDG 73 (87)
T ss_dssp CSEEEECSS-CHHHHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC-----------
T ss_pred CCEEEEeCc-chHHHHHHHHHHhcC-C-CEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEc-----CCC
Confidence 699999999 788999999999997 7 99999999999999999999999999 8899 999999998876 355
Q ss_pred CCcceeeeeeeEEEEEEec
Q 028304 96 LLPLETTRHVSMITITLSK 114 (210)
Q Consensus 96 l~~l~~~R~VS~I~ItLSk 114 (210)
.+|+||+|+|+|++
T Consensus 74 -----~~r~vS~IeI~L~k 87 (87)
T 1nh9_A 74 -----REVNVSTIEIVLAK 87 (87)
T ss_dssp ------CCCEEEEEEEEEC
T ss_pred -----cEEEeeEEEEEEEC
Confidence 78999999999985
No 5
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.89 E-value=5.3e-23 Score=155.93 Aligned_cols=89 Identities=31% Similarity=0.481 Sum_probs=80.0
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeeccceecccCC
Q 028304 17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGL 96 (210)
Q Consensus 17 ~~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~t~I~tv~i~d~~eP~eEGl 96 (210)
++|.|+|++|+-+ +||.+++.+|++ |.++|+|||+|+||+|||++||+||+|+.+ .++++++++.++|.+.++|
T Consensus 3 ~~~vv~vg~Kpv~-~YV~~~i~~~n~-g~~eV~ikA~G~aIskAVdvaei~k~R~~~---~v~v~~I~I~se~~~~e~G- 76 (91)
T 3toe_A 3 EENVVYIGNKPVM-NYVLAVVTQMNG-GTSEVILKARGIAISRAVDVAEIVRNRFIP---DIQIENIDICTEEIIGNEG- 76 (91)
T ss_dssp --CCEECCSSCHH-HHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHTCT---TCEEEEEEEEEEEEECTTS-
T ss_pred ccCEEEECCCcHH-HHHHHHHHHHhC-CCCEEEEEEehhHHHHHHHHHHHHHHhccC---CcEEEEEEeeeEEeecCCC-
Confidence 4799999999955 999999999995 899999999999999999999999999842 3599999999999999999
Q ss_pred CcceeeeeeeEEEEEEecc
Q 028304 97 LPLETTRHVSMITITLSKK 115 (210)
Q Consensus 97 ~~l~~~R~VS~I~ItLSk~ 115 (210)
.+|+||+|+|+|+++
T Consensus 77 ----~~r~VS~IeI~L~k~ 91 (91)
T 3toe_A 77 ----TATNVSAIEIQLRKD 91 (91)
T ss_dssp ----SEEEEEEEEEEEEC-
T ss_pred ----ceeEeeEEEEEEECC
Confidence 799999999999974
No 6
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A
Probab=99.85 E-value=4.5e-21 Score=144.74 Aligned_cols=84 Identities=19% Similarity=0.293 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeeccceecccCC
Q 028304 17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGL 96 (210)
Q Consensus 17 ~~NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~t~I~tv~i~d~~eP~eEGl 96 (210)
++|.|+|+++ ++.|||.+|+.+|++ +.++|+|||+|+||+|||+|||+||+|+.+.+|..+ +++..+ +
T Consensus 5 ~~~iv~vg~k-pv~nYV~~~~~~ln~-g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~---i~i~se-----~-- 72 (89)
T 2bky_X 5 LNEIVVRKTK-NVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVN---VQTGSE-----V-- 72 (89)
T ss_dssp CEEEECCTTS-CHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEE---EEEEEE-----E--
T ss_pred CCCEEEECCC-CHHHHHHHHHHHHhC-CCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEE---EEeccc-----c--
Confidence 4678888887 577999999999995 899999999999999999999999999987765544 334322 1
Q ss_pred CcceeeeeeeEEEEEEecc
Q 028304 97 LPLETTRHVSMITITLSKK 115 (210)
Q Consensus 97 ~~l~~~R~VS~I~ItLSk~ 115 (210)
..+|+||+|+|+|++.
T Consensus 73 ---~~~r~VS~IeI~L~k~ 88 (89)
T 2bky_X 73 ---RDRRRISYILLRLKRV 88 (89)
T ss_dssp ---ETTEEEEEEEEEEEEC
T ss_pred ---CcceEeeeEEEEEEec
Confidence 3689999999999974
No 7
>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A
Probab=99.75 E-value=5.2e-18 Score=135.83 Aligned_cols=91 Identities=25% Similarity=0.380 Sum_probs=70.8
Q ss_pred CCCCCEEEEcC-CCchHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeeccceecc
Q 028304 15 PIDENEIRITS-QGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLE 93 (210)
Q Consensus 15 p~~~NeIrVt~-k~~irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~t~I~tv~i~d~~eP~e 93 (210)
..++|+|+|+. +.++.+||.+|+.+|+ ++++|+|+|+|+||++||+||||||+|+-..++.+.+++.++.++
T Consensus 17 ~~~~N~I~Vs~~kkP~~nYV~~a~~~l~--g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~----- 89 (130)
T 1vm0_A 17 SQKKNRIQVSNTKKPLFFYVNLAKRYMQ--QYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDD----- 89 (130)
T ss_dssp --CTTEEECCCTTSCHHHHHHHHHHHHH--HHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC-------
T ss_pred CCCCCEEEEecCCCCceeHHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccC-----
Confidence 34689999996 3556699999999998 689999999999999999999999999655556666677776543
Q ss_pred cCCCcceeeeeeeEEEEEEeccc
Q 028304 94 EGLLPLETTRHVSMITITLSKKE 116 (210)
Q Consensus 94 EGl~~l~~~R~VS~I~ItLSk~~ 116 (210)
++ .++.++|.|+|+|.+.+
T Consensus 90 ~~----~r~v~~skIEI~L~k~~ 108 (130)
T 1vm0_A 90 AR----GRPVQKAKIEITLVKSE 108 (130)
T ss_dssp --------CEEEEEEEEEEEECT
T ss_pred CC----CcccccceEEEEEEecC
Confidence 11 14566799999999864
No 8
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=7.8e-16 Score=124.46 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=86.6
Q ss_pred eeccCCCCCCCCC----CCEEEEcCCCchHHHHHHHHHHHhh---CCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeE
Q 028304 5 QRVEKPKAETPID----ENEIRITSQGRMRSYITYAMTLLQE---RGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQN 77 (210)
Q Consensus 5 ~rV~kp~~~~p~~----~NeIrVt~k~~irnYV~~A~~lL~~---~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~ 77 (210)
+.+.++-+..|.. +|+|+|++++.+...+..|.+||++ .+.++|+|+|||+||+||+++|..++++. ++.-.
T Consensus 13 k~irk~P~~k~~s~~~~~~~iYV~skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~-~~~V~ 91 (140)
T 3iab_B 13 KRVTKHPSLKTLTHKQIHTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQK-NKKIE 91 (140)
T ss_dssp -CCEECCCCCCCCHHHHTTEEECCSSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTT-CCCEE
T ss_pred CccCCCCCCcCccccccCceEEEecCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcC-CEEEE
Confidence 4454443344433 7999999999999999999999985 26899999999999999999999999974 68888
Q ss_pred EEEEEEEeeccceecccC------------CCcceeeeeeeEEEEEEe
Q 028304 78 TVIGSTDITDTWEPLEEG------------LLPLETTRHVSMITITLS 113 (210)
Q Consensus 78 t~I~tv~i~d~~eP~eEG------------l~~l~~~R~VS~I~ItLS 113 (210)
+.++||.+.|+++|.++. .+...++|+||+|||.+.
T Consensus 92 V~T~TV~vvDd~~~~~~~~~~~d~~~~d~d~e~~~rkR~vS~VeirIy 139 (140)
T 3iab_B 92 VYTKTIEVLDEVITEGQADIDMESDVEDDDKETQLKKRAVSGVELRIY 139 (140)
T ss_dssp EEEEEEEEEEECC--------------------CEEEEEEEEEEEEEE
T ss_pred EEeceEEEEEeeeecCCcccccccccccccccchheeeeeeeEEEEEe
Confidence 999999999999997654 567889999999999986
No 9
>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.9e-05 Score=64.74 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=70.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh-----CCCCeEEEEEcChhHHHHHHHHHHHHHhc----CCceeEEEEEEEEeeccce
Q 028304 20 EIRITSQGRMRSYITYAMTLLQE-----RGSNEIVFKAMGRAINKTVTIVELIKRRI----VGLHQNTVIGSTDITDTWE 90 (210)
Q Consensus 20 eIrVt~k~~irnYV~~A~~lL~~-----~g~~eVvIkA~G~AIsKAV~VAEILKrRi----~GLhQ~t~I~tv~i~d~~e 90 (210)
.+.|+++..|+..|+.-.++|+. ...+.|.|.|.|..|.|++++.||+|.++ ++|||++++.+.....
T Consensus 46 ~~kIsKNDnIK~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~--- 122 (158)
T 3iab_A 46 YHGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKR--- 122 (158)
T ss_dssp EEECCTTCCHHHHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC----
T ss_pred EEEeccCchHHHHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCC---
Confidence 34499999999999999998851 25689999999999999999999999987 3599999999886542
Q ss_pred ecccCCCc-ceeeeeeeEEEEEEeccc
Q 028304 91 PLEEGLLP-LETTRHVSMITITLSKKE 116 (210)
Q Consensus 91 P~eEGl~~-l~~~R~VS~I~ItLSk~~ 116 (210)
+|-++ ++++-+||-+-+.+++++
T Consensus 123 ---~grNELle~r~~vPILi~~i~~~~ 146 (158)
T 3iab_A 123 ---EGRNELQEERLKVPILVTMVSDSE 146 (158)
T ss_dssp ---------CCCCEEEEEEEEEEESSS
T ss_pred ---ccccHHHHhhcCCCEEEEEEeccc
Confidence 23223 456778888888888764
No 10
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=92.34 E-value=0.025 Score=43.80 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=3.4
Q ss_pred eeeeEEEE
Q 028304 103 RHVSMITI 110 (210)
Q Consensus 103 R~VS~I~I 110 (210)
+++..+.|
T Consensus 53 ~~lg~v~I 60 (119)
T 1b34_A 53 VQLETLSI 60 (119)
T ss_dssp EEEEEEEE
T ss_pred eEcceEEE
Confidence 44444433
No 11
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=57.94 E-value=2.1 Score=38.22 Aligned_cols=7 Identities=29% Similarity=0.714 Sum_probs=0.0
Q ss_pred Ccccccc
Q 028304 171 ISCYTCA 177 (210)
Q Consensus 171 ~~~~~~~ 177 (210)
.|||.|.
T Consensus 315 ~~~~~~~ 321 (358)
T 2pk2_A 315 RPNYHCQ 321 (358)
T ss_dssp -------
T ss_pred ccceecH
Confidence 3556553
No 12
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=48.33 E-value=80 Score=23.33 Aligned_cols=51 Identities=24% Similarity=0.438 Sum_probs=37.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhCCCCeEEEEEcC-hhHHHHHHHHHHHHHhc
Q 028304 19 NEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMG-RAINKTVTIVELIKRRI 71 (210)
Q Consensus 19 NeIrVt~k~~irnYV~~A~~lL~~~g~~eVvIkA~G-~AIsKAV~VAEILKrRi 71 (210)
+.+.|.++++-...-..--..+.+ ...|.|.|.| .|++.||.-.-|-+.=+
T Consensus 2 e~LKVSs~S~P~~VAGAIA~~lRe--~~~veiqAIGa~AvNqAVKAIAIARg~l 53 (90)
T 2ek0_A 2 ETLRVSSKSRPNSVAGAIAAMLRT--KGEVEVQAIGPQAVNQAVKAIAIARGYI 53 (90)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHHH--HSEEEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCChHHHHHHHHHHHhc--CCceEEEEECHHHHHHHHHHHHHHHHhh
Confidence 468999999986665555557776 3599999999 58888887555544444
No 13
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=37.08 E-value=14 Score=21.41 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=12.3
Q ss_pred eeeeeeEEEEEEec
Q 028304 101 TTRHVSMITITLSK 114 (210)
Q Consensus 101 ~~R~VS~I~ItLSk 114 (210)
.+|.+|+|.|||..
T Consensus 6 eKR~aSSvFITLap 19 (26)
T 2k9u_B 6 EKRVASSVFITLAP 19 (26)
T ss_dssp SSSCEEEEEEEECC
T ss_pred hhheeeeEEEEecC
Confidence 57999999999974
No 14
>3u5c_h Suppressor protein STM1; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_h
Probab=28.86 E-value=12 Score=32.93 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=0.0
Q ss_pred CCCCCCCCCccccCCc
Q 028304 153 GRSGRGRSRGRGILCH 168 (210)
Q Consensus 153 grgg~g~~~g~~~~~~ 168 (210)
.|||||.-||++++++
T Consensus 236 ~rgg~g~~~~~~~~~~ 251 (273)
T 3u5c_h 236 RRGGRGARKGNNTANA 251 (273)
T ss_dssp ----------------
T ss_pred CcCCcccccCCCCCCC
Confidence 3555554445444443
No 15
>4h1k_B Nuclear polyadenylated RNA-binding protein NAB2; heat repeats, nuclear import, protein transport, importin, transportin; 3.04A {Saccharomyces cerevisiae}
Probab=24.62 E-value=37 Score=21.43 Aligned_cols=10 Identities=60% Similarity=1.106 Sum_probs=4.3
Q ss_pred CCCCCCCCCc
Q 028304 153 GRSGRGRSRG 162 (210)
Q Consensus 153 grgg~g~~~g 162 (210)
+||||+..||
T Consensus 14 ~RGgRgg~rg 23 (38)
T 4h1k_B 14 RRGGRGGNRG 23 (38)
T ss_pred CcCCcccccc
Confidence 3444443333
No 16
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=23.01 E-value=33 Score=19.56 Aligned_cols=12 Identities=42% Similarity=1.021 Sum_probs=6.1
Q ss_pred CCCCCCCCCCCc
Q 028304 151 RRGRSGRGRSRG 162 (210)
Q Consensus 151 ~rgrgg~g~~~g 162 (210)
|||.||.|-|.|
T Consensus 3 grgkggkglgkg 14 (26)
T 4gqb_C 3 GRGKGGKGLGKG 14 (26)
T ss_pred CCCcCCcccCcc
Confidence 455555554444
No 17
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=21.49 E-value=2.3e+02 Score=20.39 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=39.3
Q ss_pred EEEEcCCCc---hHHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeeccceecccC
Q 028304 20 EIRITSQGR---MRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEG 95 (210)
Q Consensus 20 eIrVt~k~~---irnYV~~A~~lL~~~g~~eVvIkA~G~AIsKAV~VAEILKrRi~GLhQ~t~I~tv~i~d~~eP~eEG 95 (210)
||+++.+.. +.-=+..|..+|++...=.|+|+=.|+.+...=.-.++|.+=...| ..++.++ -.|..||
T Consensus 4 Eikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l---~d~~~ve----~~pk~eG 75 (89)
T 1i96_V 4 SIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDL---KDLAVVE----MKPEMLG 75 (89)
T ss_pred EEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHh---hhheEEe----cCccccC
Confidence 566665433 3334677888998755667888888988764322233333322223 2345444 3566677
Done!