BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028305
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 244 bits (623), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 117/177 (66%), Positives = 141/177 (79%), Gaps = 3/177 (1%)
Query: 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWD 67
+++ LLKVI+LGDSGVGKTSLMNQYV KFS QYKATIGADF+TKE+ +DD+LVT+QIWD
Sbjct: 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWD 63
Query: 68 TAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLL 127
TAGQERFQSLG AFYRGADCCVLV+DV TF++L +WR+EFL QA P + E PFV+L
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 128 GNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNE 184
GNKID + +R V K+A WC + NIPYFETSAKE N+++AF +A ALK E
Sbjct: 124 GNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 243 bits (621), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 122/205 (59%), Positives = 151/205 (73%), Gaps = 5/205 (2%)
Query: 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWD 67
+++ LLKVI+LGDSGVGKTSLMNQYV KFS QYKATIGADF+TKE+ +DD+LVT+QIWD
Sbjct: 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWD 63
Query: 68 TAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLL 127
TAGQERFQSLG AFYRGADCCVLV+DV TF++L +WR+EFL QA P + E PFV+L
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 128 GNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEHKD 187
GNKID + +R V K+A WC + NIPYFETSAKE N+++AF +A ALK E +
Sbjct: 124 GNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 188 IYYQ--PQGISETVSEVEQRGGCAC 210
Y P+ I +E + +C
Sbjct: 181 ELYNEFPEPIKLDKNERAKASAESC 205
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 243 bits (619), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 117/177 (66%), Positives = 141/177 (79%), Gaps = 3/177 (1%)
Query: 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWD 67
+++ LLKVI+LGDSGVGKTSLMNQYV KFS QYKATIGADF+TKE+ +DD+LVT+QIWD
Sbjct: 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWD 63
Query: 68 TAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLL 127
TAGQERFQSLG AFYRGADCCVLV+DV TF++L +WR+EFL QA P + E PFV+L
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 128 GNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNE 184
GNKID + +R V K+A WC + NIPYFETSAKE N+++AF +A ALK E
Sbjct: 124 GNKIDFE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 241 bits (614), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 116/177 (65%), Positives = 140/177 (79%), Gaps = 3/177 (1%)
Query: 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWD 67
+++ LLKVI+LGDSGVGKTSLMNQYV KFS QYKATIGADF+TKE+ +DD+LVT+QIWD
Sbjct: 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWD 63
Query: 68 TAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLL 127
TAG ERFQSLG AFYRGADCCVLV+DV TF++L +WR+EFL QA P + E PFV+L
Sbjct: 64 TAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 128 GNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNE 184
GNKID + +R V K+A WC + NIPYFETSAKE N+++AF +A ALK E
Sbjct: 124 GNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 219 bits (559), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 106/176 (60%), Positives = 137/176 (77%), Gaps = 2/176 (1%)
Query: 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD-DKLVTLQIW 66
+++N+LKVI+LGDSGVGKTSLM++YV +K+SQQYKATIGADF+TKE+ +D DK+ T+Q+W
Sbjct: 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVW 63
Query: 67 DTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVL 126
DTAGQERFQSLG AFYRGADCCVLVYDV +FE++++WR+EFL A+ E PFV+
Sbjct: 64 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123
Query: 127 LGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
LGNKID + S ++V +K A E G+IP F TSAK N+D AF +A AL+
Sbjct: 124 LGNKIDAE-ESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 89/165 (53%), Positives = 120/165 (72%), Gaps = 3/165 (1%)
Query: 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDT 68
+ +L KVI+LGD GVGK+SLMN+YV NKF Q TIG +F+ K+L++D VT+QIWDT
Sbjct: 6 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 65
Query: 69 AGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLG 128
AGQERF+SL + FYRG+DCC+L + V+ ++F++L NW++EF+ AD E E+ PFV+LG
Sbjct: 66 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 125
Query: 129 NKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
NKID S R V ++A WC G+ PYFETSAK+ N+ AF
Sbjct: 126 NKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 89/165 (53%), Positives = 120/165 (72%), Gaps = 3/165 (1%)
Query: 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDT 68
+ +L KVI+LGD GVGK+SLMN+YV NKF Q TIG +F+ K+L++D VT+QIWDT
Sbjct: 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 69 AGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLG 128
AGQERF+SL + FYRG+DCC+L + V+ ++F++L NW++EF+ AD E E+ PFV+LG
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 129 NKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
NKID S R V ++A WC G+ PYFETSAK+ N+ AF
Sbjct: 124 NKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/162 (54%), Positives = 120/162 (74%), Gaps = 3/162 (1%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
LLKVI+LGD GVGK+SLMN+YV NKF Q TIG +F+ ++L++D + VTLQIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+SL + FYRGADCC+L + V+ +++FE+L NW++EF+ AD + E PFV+LGNK+
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
D + R V ++A WC G+ PY ETSAK+D N+ AF
Sbjct: 127 DKE---DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 118/165 (71%), Gaps = 3/165 (1%)
Query: 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDT 68
+ +L K+I+LGD GVGK+SLMN+YV NKF Q TIG +F+ K+L++D VT+QIWDT
Sbjct: 8 KSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 67
Query: 69 AGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLG 128
AGQERF+SL + FYRG+DCC+L + V+ ++F++L NW++EF+ AD E E+ PFV+LG
Sbjct: 68 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 127
Query: 129 NKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
NK D R V ++A WC G+ PYFETSAK+ N+ AF
Sbjct: 128 NKTDI---KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 107/162 (66%), Gaps = 7/162 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L KV+++GDSGVGK++L++++ N+F+ + K+TIG +F T+ +Q+D K + QIWDTAGQ
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ER++ + SA+YRGA +LVYD+ T+E+++ W +E AD +L+GNK
Sbjct: 65 ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN----IVIMLVGNK- 119
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+D R VP +A + A + N+ + ETSA + N++EAF
Sbjct: 120 -SDLRHLRAVPTDEARAF-AEKNNLSFIETSALDSTNVEEAF 159
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 113/181 (62%), Gaps = 8/181 (4%)
Query: 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70
+L K++++GDSGVGK+SL+ ++ N FS Y TIG DF + ++++ + V LQIWDTAG
Sbjct: 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAG 67
Query: 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130
QERF+++ S +YRG ++VYDV ++F +++ W E + D + C +L+GNK
Sbjct: 68 QERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD----DVCR-ILVGNK 122
Query: 131 IDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEHKDIYY 190
D +VV + A ++ G I FETSAKE+ N++E F C+ E+ L+ + ++
Sbjct: 123 --NDDPERKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVLRAKKDNLAK 179
Query: 191 Q 191
Q
Sbjct: 180 Q 180
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70
+++K++++GDSGVGK+ L+ ++V +KF+ + TIG DF K + ++ K V LQ+WDTAG
Sbjct: 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 78
Query: 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130
QERF+++ +A+YRGA +LVYDV ++TF +++ W K + ++ +L+GNK
Sbjct: 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQW----FKTVNEHANDEAQLLLVGNK 134
Query: 131 IDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEI 179
D + +RVV + E A IP+ E+SAK D N++E F +A++
Sbjct: 135 SDME---TRVVTADQG-EALAKELGIPFIESSAKNDDNVNEIFFTLAKL 179
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70
+++K++++GDSGVGK+ L+ ++V +KF+ + TIG DF K + ++ K V LQIWDTAG
Sbjct: 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130
QERF+++ +A+YRGA +LVYD+ ++TF +++ W K + ++ +L+GNK
Sbjct: 62 QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQW----FKTVNEHANDEAQLLLVGNK 117
Query: 131 IDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEI 179
D + +RVV + E A IP+ E+SAK D N++E F +A++
Sbjct: 118 SDME---TRVVTADQG-EALAKELGIPFIESSAKNDDNVNEIFFTLAKL 162
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 106/165 (64%), Gaps = 7/165 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L KV+++GDSGVGK++L++++ N+F+ + K+TIG +F T+ +Q+D K + QIWDTAGQ
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ER++++ SA+YRGA +LVYD+ T+E+++ W +E AD +L+GNK
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN----IVIMLVGNK- 143
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCV 176
+D R VP +A + G + + ETSA + N++ AF +
Sbjct: 144 -SDLRHLRAVPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTI 186
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 106/165 (64%), Gaps = 7/165 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L KV+++GDSGVGK++L++++ N+F+ + K+TIG +F T+ +Q+D K + QIWDTAGQ
Sbjct: 20 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ER++++ SA+YRGA +LVYD+ T+E+++ W +E AD +L+GNK
Sbjct: 80 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN----IVIMLVGNK- 134
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCV 176
+D R VP +A + G + + ETSA + N++ AF +
Sbjct: 135 -SDLRHLRAVPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTI 177
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70
+++K++++GDSGVGK+ L+ ++V +KF+ + TIG DF K + ++ K V LQ+WDTAG
Sbjct: 6 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 65
Query: 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130
QERF+++ +A+YRGA +LVYDV ++TF +++ W K + ++ +L+GNK
Sbjct: 66 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQW----FKTVNEHANDEAQLLLVGNK 121
Query: 131 IDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEI 179
D + +RVV + E A IP+ E+SAK D N++E F +A++
Sbjct: 122 SDME---TRVVTADQG-EALAKELGIPFIESSAKNDDNVNEIFFTLAKL 166
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 109/169 (64%), Gaps = 8/169 (4%)
Query: 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70
++ K++++GDSGVGK+ L+ ++V +KF+ + TIG DF K + ++ K V LQIWDTAG
Sbjct: 2 SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130
QERF+++ +A+YRGA +LVYD+ ++TF +++ W K + ++ +L+GNK
Sbjct: 62 QERFRTITTAYYRGAXGIILVYDITDERTFTNIKQW----FKTVNEHANDEAQLLLVGNK 117
Query: 131 IDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEI 179
D + +RVV + E A IP+ E+SAK D N++E F +A++
Sbjct: 118 SDXE---TRVVTADQG-EALAKELGIPFIESSAKNDDNVNEIFFTLAKL 162
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 110/166 (66%), Gaps = 7/166 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K++++GDSGVGK+ L+ ++ + +++ Y +TIG DF + +++D K + LQIWDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+++ S++YRGA ++VYDV Q+++ +++ W L++ D E +L+GNK
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQW----LQEIDRYASENVNKLLVGNK- 123
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
+D + +VV A E+ G IP+ ETSAK N+++AF+ +A
Sbjct: 124 -SDLTTKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMA 167
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 110/166 (66%), Gaps = 7/166 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K++++GDSGVGK+ L+ ++ + +++ Y +TIG DF + +++D K + LQIWDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+++ S++YRGA ++VYDV Q+++ +++ W L++ D E +L+GNK
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQW----LQEIDRYASENVNKLLVGNK- 123
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
+D + +VV A E+ G IP+ ETSAK N+++AF+ +A
Sbjct: 124 -SDLTTKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMA 167
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 109/169 (64%), Gaps = 8/169 (4%)
Query: 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70
++ K++++GDSGVGK+ L+ ++V +KF+ + TIG DF K + ++ K V LQ+WDTAG
Sbjct: 2 SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 61
Query: 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130
QERF+++ +A+YRGA +LVYDV ++TF +++ W K + ++ +L+GNK
Sbjct: 62 QERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQW----FKTVNEHANDEAQLLLVGNK 117
Query: 131 IDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEI 179
D + +RVV + E A IP+ E+SAK D N++E F +A++
Sbjct: 118 SDXE---TRVVTADQG-EALAKELGIPFIESSAKNDDNVNEIFFTLAKL 162
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 113/174 (64%), Gaps = 7/174 (4%)
Query: 4 SVNMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTL 63
S+N + L K++++GDSGVGK+ L+ ++ + +++ Y +TIG DF + +++D K + L
Sbjct: 8 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 67
Query: 64 QIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACP 123
QIWDTAGQERF+++ S++YRGA ++VYDV Q++F +++ W +E + A E
Sbjct: 68 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVN 123
Query: 124 FVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
+L+GNK D + +VV A E+ G IP+ ETSAK N++++F+ +A
Sbjct: 124 KLLVGNKCDLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 174
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 112/174 (64%), Gaps = 7/174 (4%)
Query: 4 SVNMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTL 63
S+N + L K++++GDSGVGK L+ ++ + +++ Y +TIG DF + +++D K + L
Sbjct: 8 SMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 67
Query: 64 QIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACP 123
QIWDTAGQERF+++ S++YRGA ++VYDV Q++F +++ W L++ D E
Sbjct: 68 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW----LQEIDRYASENVN 123
Query: 124 FVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
+L+GNK D + +VV A E+ G IP+ ETSAK N++++F+ +A
Sbjct: 124 KLLVGNKCDLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 174
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 105/165 (63%), Gaps = 7/165 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L KV+++GDSGVGK++L++++ N+F+ + K+TIG +F T+ +Q+D K + QIWDTAG
Sbjct: 8 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ER++++ SA+YRGA +LVYD+ T+E+++ W +E AD +L+GNK
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN----IVIMLVGNK- 122
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCV 176
+D R VP +A + G + + ETSA + N++ AF +
Sbjct: 123 -SDLRHLRAVPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTI 165
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 109/166 (65%), Gaps = 7/166 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K++++GDSGVGK+ L+ ++ + +++ Y +TIG DF + +++D K + LQIWDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+++ S++YRGA ++VYDV Q++F +++ W L++ D E +L+GNK
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW----LQEIDRYASENVNKLLVGNKC 121
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
D + +VV A E+ G IP+ ETSAK N++++F+ +A
Sbjct: 122 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 164
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 109/166 (65%), Gaps = 7/166 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K++++GDSGVGK+ L+ ++ + +++ Y +TIG DF + +++D K + LQIWDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+++ S++YRGA ++VYDV Q++F +++ W L++ D E +L+GNK
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW----LQEIDRYASENVNKLLVGNKC 121
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
D + +VV A E+ G IP+ ETSAK N++++F+ +A
Sbjct: 122 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 164
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 109/166 (65%), Gaps = 7/166 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K++++GDSGVGK+ L+ ++ + +++ Y +TIG DF + +++D K + LQIWDTAGQ
Sbjct: 25 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+++ S++YRGA ++VYDV Q++F +++ W L++ D E +L+GNK
Sbjct: 85 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW----LQEIDRYASENVNKLLVGNKC 140
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
D + +VV A E+ G IP+ ETSAK N++++F+ +A
Sbjct: 141 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 183
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 105/165 (63%), Gaps = 7/165 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L KV+++GDSGVGK++L++++ N+F+ + K+TIG +F T+ +Q+D K + QIWDTAG
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ER++++ SA+YRGA +LVYD+ T+E+++ W +E AD +L+GNK
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN----IVIMLVGNK- 143
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCV 176
+D R VP +A + G + + ETSA + N++ AF +
Sbjct: 144 -SDLRHLRAVPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTI 186
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 104/165 (63%), Gaps = 7/165 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L KV+++GDSGVGK++L++++ N+F+ + K+TIG +F T+ +Q+D K + QIWDTAG
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ER++++ SA+YRGA +LVYD+ T+E+++ W +E AD L+GNK
Sbjct: 65 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN----IVIXLVGNK- 119
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCV 176
+D R VP +A + G + + ETSA + N++ AF +
Sbjct: 120 -SDLRHLRAVPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTI 162
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 104/165 (63%), Gaps = 7/165 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L KV+++GDSGVGK++L++++ N+F+ + K+TIG +F T+ +Q+D K + QIWDTAG
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ER++++ SA+YRGA +LVYD+ T+E+++ W +E AD L+GNK
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN----IVIXLVGNK- 125
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCV 176
+D R VP +A + G + + ETSA + N++ AF +
Sbjct: 126 -SDLRHLRAVPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTI 168
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 108/164 (65%), Gaps = 7/164 (4%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GDSGVGK+ L+ ++ + +++ Y +TIG DF + +++D K + LQIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
F+++ S++YRGA ++VYDV Q++F +++ W L++ D E +L+GNK D
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW----LQEIDRYASENVNKLLVGNKCDL 116
Query: 134 DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
+ +VV A E+ G IP+ ETSAK N++++F+ +A
Sbjct: 117 --TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 157
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 110/174 (63%), Gaps = 7/174 (4%)
Query: 4 SVNMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTL 63
S N + L K++++GDSGVGK+ L+ ++ + +++ Y +TIG DF + +++D K + L
Sbjct: 25 SXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 84
Query: 64 QIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACP 123
QIWDTAGQERF+++ S++YRGA ++VYDV Q++F +++ W L++ D E
Sbjct: 85 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW----LQEIDRYASENVN 140
Query: 124 FVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
+L+GNK D + +VV A E+ G IP+ ETSAK N++++F A
Sbjct: 141 KLLVGNKCDLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFXTXA 191
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 109/163 (66%), Gaps = 8/163 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQM-DDKLVTLQIWDTAG 70
L K++++GDSGVGK++L++++ ++F+ + K+TIG +F TK +Q+ ++K++ QIWDTAG
Sbjct: 7 LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130
QER++++ SA+YRGA +LVYD+ + +FE+++ W +E AD +L+GNK
Sbjct: 67 QERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSN----IVILLVGNK 122
Query: 131 IDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+D RV+ A ++ A + + + ETSA E N++ AF
Sbjct: 123 --SDLKHLRVINDNDATQY-AKKEKLAFIETSALEATNVELAF 162
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 105/171 (61%), Gaps = 6/171 (3%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
L+VI++G GVGKTSLM ++ + F + K+T+G DF K +++ K + LQIWDTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF S+ SA+YR A +LVYD+ ++TF+ L W +K D E +L+GNK+D
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKW----MKMIDKYASEDAELLLVGNKLD 142
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKN 183
+ + R + +++ ++ + + E SAK++ N+DE FL + + LK
Sbjct: 143 CE--TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 110/176 (62%), Gaps = 7/176 (3%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K+++LG+S VGK+SL+ ++V +F + ++TIGA F+T+ + +DD V +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R+ SL +YRGA ++VYD+ Q+TF + W +E +QA P + L GNK D
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASP----SIVIALAGNKAD 124
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEHKDI 188
+ R+V ++A + A ++ + ETSAK N+++ FL +A+ K+E +++
Sbjct: 125 L--ANKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNL 177
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 108/166 (65%), Gaps = 7/166 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K++++GDSGVGK+ L+ ++ + +++ Y +TIG DF + +++D K + LQIWDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+++ S++YRGA ++VYDV Q++F +++ W L++ D E +L+G I
Sbjct: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW----LQEIDRYASENVNKLLVG--I 121
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
D + +VV A E+ G IP+ ETSAK N++++F+ +A
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 166
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 107/170 (62%), Gaps = 8/170 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K++V+G+ VGK+S++ +Y F++ YK TIG DF+ +++Q++D+ V L +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
F ++ A+YRGA CVLV+ +++FE++ +WRE+ + A+ G+ P L+ NKID
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVV--AEVGD---IPTALVQNKID 120
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
S + + E A R + ++ TS KED N+ E F +AE L+
Sbjct: 121 LLDDSC---IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 106/166 (63%), Gaps = 7/166 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K++++GDSGVGKT ++ ++ + F+ + +TIG DF + +++D K + LQIWDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+++ +A+YRGA +LVYD+ +K+F++++NW ++ + ++LGNK
Sbjct: 66 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW----IRNIEEHASADVEKMILGNKC 121
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
D + R V +++ E A I + ETSAK + N++ AF +A
Sbjct: 122 DVN--DKRQVSKERG-EKLALDYGIKFMETSAKANINVENAFFTLA 164
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 101/166 (60%), Gaps = 7/166 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K+++LG+S VGK+SL+ ++V +F + ++TIGA F+T+ + +DD V +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R+ SL +YRGA ++VYD+ TF +NW +E +QA P L GNK D
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN----IVIALAGNKAD 119
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
S R V ++A + A ++ + ETSAK N++E F+ +A+
Sbjct: 120 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 162
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 106/167 (63%), Gaps = 7/167 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K++++GDSGVGKT ++ ++ + F+ + +TIG DF + +++D K + LQIWDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+++ +A+YRGA +LVYD+ +K+F++++NW + A + ++LGNK
Sbjct: 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK----MILGNKC 123
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
D + R V +++ E A I + ETSAK + N++ AF +A
Sbjct: 124 DVN--DKRQVSKERG-EKLALDYGIKFMETSAKANINVENAFFTLAR 167
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 105/171 (61%), Gaps = 7/171 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K+++LG+S VGK+SL+ ++V +F + ++TIGA F+T+ + +DD V +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R+ SL +YRGA ++VYD+ +++F +NW +E +QA P L GNK D
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKAD 123
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKN 183
+ R V ++A + A ++ + ETSAK N++E F+ +A+ KN
Sbjct: 124 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 105/171 (61%), Gaps = 7/171 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K+++LG+S VGK+SL+ ++V +F + ++TIGA F+T+ + +DD V +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R+ SL +YRGA ++VYD+ +++F +NW +E +QA P L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKAD 122
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKN 183
+ R V ++A + A ++ + ETSAK N++E F+ +A+ KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 118/195 (60%), Gaps = 13/195 (6%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K++++G+SGVGK+ L+ ++ + ++ Y +TIG DF K +++D K V LQIWDTAGQ
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+++ S++YRG+ ++VYDV Q++F ++ W L++ D +L+GNK
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW----LQEIDRYATSTVLKLLVGNKC 123
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEHKDIYYQ 191
D RVV A E+ A +P+ ETSA + N+++AFL +A + K+ Q
Sbjct: 124 DLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMAR-----QIKESMSQ 175
Query: 192 PQGISETVSEVEQRG 206
Q ++ET + E +G
Sbjct: 176 -QNLNETTQKKEDKG 189
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 120/213 (56%), Gaps = 28/213 (13%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K++++G+SGVGK+ L+ ++ + ++ Y +TIG DF K +++D K V LQIWDTAGQ
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+++ S++YRG+ ++VYDV Q++F ++ W L++ D +L+GNK
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW----LQEIDRYATSTVLKLLVGNKC 123
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA-------------E 178
D RVV A E+ A +P+ ETSA + N+++AFL +A E
Sbjct: 124 DLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE 180
Query: 179 IALKNEHK-DIYYQPQGISETVSEVEQRGGCAC 210
K E K ++ + Q ++ T GGC C
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNT-------GGCCC 206
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 7/166 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + + +++K V LQIWDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+++ S++YRGA ++VYDV + +F++++ W +E + A E +L+GNK
Sbjct: 69 ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA----MENVNKLLVGNKC 124
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
D S RVV + E G I + ETSAK N+++AF +A
Sbjct: 125 DL--VSKRVVTSDEGRELADSHG-IKFIETSAKNAYNVEQAFHTMA 167
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 106/184 (57%), Gaps = 19/184 (10%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K I++GD+GVGK+ L+ Q+ +F + TIG +F + + +D K + LQIWDTAGQ
Sbjct: 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFV--LLGN 129
E F+S+ ++YRGA +LVYD+ ++TF L +W E D +H + V L+GN
Sbjct: 81 ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLE------DARQHSSSNMVIMLIGN 134
Query: 130 KIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEHKDIY 189
K D + SR +++ E A + + ETSAK CN++EAF+ N K+IY
Sbjct: 135 KSDLE---SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFI--------NTAKEIY 183
Query: 190 YQPQ 193
+ Q
Sbjct: 184 RKIQ 187
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 105/171 (61%), Gaps = 7/171 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K+++LG+S VGK+SL+ ++V +F + ++TIGA F+T+ + +DD V +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R+ SL +YRGA ++VYD+ +++F +NW +E +QA P L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKAD 122
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKN 183
+ R V ++A + A ++ + ETSAK N++E F+ +A+ KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 105/171 (61%), Gaps = 7/171 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K+++LG+S VGK+SL+ ++V +F + ++TIGA F+T+ + +DD V +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R+ SL +YRGA ++VYD+ +++F +NW +E +QA P L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKAD 122
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKN 183
+ R V ++A + A ++ + ETSAK N++E F+ +A+ KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 105/171 (61%), Gaps = 7/171 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K+++LG+S VGK+SL+ ++V +F + ++TIGA F+T+ + +DD V +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R+ SL +YRGA ++VYD+ +++F +NW +E +QA P L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKAD 122
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKN 183
+ R V ++A + A ++ + ETSAK N++E F+ +A+ KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 105/162 (64%), Gaps = 7/162 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K++++GDSGVGK++L++++ N+F+ K+TIG +F T+ L+++ K + QIWDTAGQ
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ER++++ SA+YRGA ++VYD++ ++E+ +W E + AD + L+GNK
Sbjct: 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD----DNVAVGLIGNK- 127
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+D R VP +++ + A + + ETSA N+D+AF
Sbjct: 128 -SDLAHLRAVPTEESKTF-AQENQLLFTETSALNSENVDKAF 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 105/171 (61%), Gaps = 7/171 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K+++LG+S VGK+SL+ ++V +F + ++TIGA F+T+ + +DD V +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R+ SL +YRGA ++VYD+ +++F +NW +E +QA P L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKAD 122
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKN 183
+ R V ++A + A ++ + ETSAK N++E F+ +A+ KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 7/166 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K++++G+SGVGK+ L+ ++ + ++ Y +TIG DF K +++D K V LQIWDTAGQ
Sbjct: 21 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+++ S++YRG+ ++VYDV Q++F ++ W L++ D +L+GNK
Sbjct: 81 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW----LQEIDRYATSTVLKLLVGNKC 136
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
D RVV A E+ A +P+ ETSA + N+++AFL +A
Sbjct: 137 DLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMA 179
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 105/171 (61%), Gaps = 7/171 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K+++LG+S VGK+SL+ ++V +F + ++TIGA F+T+ + +DD V +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R+ SL +YRGA ++VYD+ +++F +NW +E +QA P L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKAD 122
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKN 183
+ R V ++A + A ++ + ETSAK N++E F+ +A+ KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 104/171 (60%), Gaps = 7/171 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K+++LG+S VGK+SL+ ++V +F + ++TIGA F+T+ + +DD V +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R+ SL +YRGA ++VYD+ +++F +NW +E +QA P L GNK D
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKAD 123
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKN 183
+ R V ++A + A ++ + ETSAK N++E F +A+ KN
Sbjct: 124 L--ANKRAVDFQEAQSY-ADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 100/166 (60%), Gaps = 7/166 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K+++LG+S VGK+SL+ ++V +F + ++TIGA F+T+ + +DD V +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R+ SL +YRGA ++VYD+ TF +NW +E +QA P L GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN----IVIALAGNKAD 121
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
S R V ++A + A ++ + ETSAK N++E F+ +A+
Sbjct: 122 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 164
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 100/166 (60%), Gaps = 7/166 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K+++LG+S VGK+SL+ ++V +F + ++TI A F+T+ + +DD V +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R+ SL +YRGA ++VYD+ TF +NW +E +QA P L GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN----IVIALAGNKAD 121
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
S R V ++A + A ++ + ETSAK N++E F+ +A+
Sbjct: 122 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 164
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 113/177 (63%), Gaps = 9/177 (5%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K++++GDSGVGK++L++++ ++F+ + K+TIG +F T+ +++++K + QIWDTAG
Sbjct: 10 LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ER++++ SA+YRGA ++VYD++ ++E+ +W E + AD + L+GNK
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENAD----DNVAVGLIGNK- 124
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF--LCVAEIALKNEHK 186
+D R VP +A + A + + ETSA N+D+AF L VA + ++H+
Sbjct: 125 -SDLAHLRAVPTDEAKNF-AMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQ 179
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 107/173 (61%), Gaps = 9/173 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K+++LG++ VGK+S++ ++V N F++ + TIGA F+T+ + +++ V +IWDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF SL +YR A ++VYDV ++F ++W +E +QA + L+GNKID
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNKID 119
Query: 133 T--DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE-IALK 182
+GG +V ++ E A + +FETSAK N+++ FL + E I LK
Sbjct: 120 XLQEGGERKVAREEG--EKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 119 bits (299), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K++++G++GVGKT L+ ++ F ATIG DF+ K ++++ + V LQIWDTAGQ
Sbjct: 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+S+ ++YR A+ +L YD+ +++F L W L++ + VL+GNKI
Sbjct: 86 ERFRSITQSYYRSANALILTYDITCEESFRCLPEW----LREIEQYASNKVITVLVGNKI 141
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
D R V Q++A E+ + ++ Y ETSAKE N+++ FL +A
Sbjct: 142 DL--AERREVSQQRAEEFSEAQ-DMYYLETSAKESDNVEKLFLDLA 184
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 119 bits (299), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 103/167 (61%), Gaps = 8/167 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKF-SQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
KV+++GDSGVGKT L+ ++ F + + +T+G DF K L +D V LQ+WDTAGQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+S+ A+YR A +L+YDV + +F+++Q W E + A +H+ +LLGNK+
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA---QHD-VALMLLGNKV 126
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
D+ RVV ++ E A +P+ ETSAK N+D AF +A+
Sbjct: 127 DS--AHERVVKREDG-EKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 170
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 119 bits (299), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K+++LG+S VGK+SL+ ++V +F + ++TIGA F+T+ + +DD V +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R+ SL +YRGA ++VYD+ +++F +NW +E +QA P L GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKAD 121
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
+ R V ++A + A ++ + ETSAK N++E F+ +A+
Sbjct: 122 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 164
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 94/161 (58%), Gaps = 7/161 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
LKV +LGD+GVGK+S++ ++V + F TIGA F+TK + ++L IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF SL +YRG+ V+VYD+ Q +F +L+ W +E LK+ P E + GNK D
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE-LKEHGP---ENIVMAIAGNKCD 139
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
R VP K A E+ G I ETSAK NI+E F
Sbjct: 140 LS--DIREVPLKDAKEYAESIGAI-VVETSAKNAINIEELF 177
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 7/162 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
KV++LG+ VGKTSL+ +Y NKF+ ++ T+GA F+TK+L + K V L IWDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF +LG +YR ++ +LVYD+ + +F+ ++NW +E K +E C ++GNKID
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG---NEIC-LCIVGNKID 122
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFL 174
+ R V ++A + G ++ TSAK++ I+E FL
Sbjct: 123 LE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFL 161
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 97/169 (57%), Gaps = 11/169 (6%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K I++GD+GVGK+ L+ Q+ +F + TIG +F + + +D K + LQIWDTAGQ
Sbjct: 10 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 69
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFV--LLGN 129
E F+S+ ++YRGA +LVYD+ + TF L W E D +H V L+GN
Sbjct: 70 ESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLE------DARQHSNSNMVIMLIGN 123
Query: 130 KIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
K D + SR +K+ E A + + ETSAK N++EAF+ A+
Sbjct: 124 KSDLE---SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 169
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 100/166 (60%), Gaps = 9/166 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
LKV +LGD+GVGK+S++ ++V + F TIGA F+TK +Q ++L IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF++L +YRG+ ++VYD+ ++TF +L+NW E + P + + GNK D
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNKCD 121
Query: 133 -TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
TD R V ++ A ++ I + ETSAK NI+E F+ ++
Sbjct: 122 LTD---VREVMERDAKDYADSIHAI-FVETSAKNAININELFIEIS 163
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 101/165 (61%), Gaps = 7/165 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
+ KV+++G+SGVGKT+L++++ N+FS + TIG +F T+ + + V QIWDTAG
Sbjct: 10 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 69
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ER++++ SA+YRGA +LV+D+ +T+ ++ W +E A+ +L+GNK
Sbjct: 70 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA----TIVVMLVGNK- 124
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCV 176
+D +R VP ++A + G + + ETSA + N++ AF V
Sbjct: 125 -SDLSQAREVPTEEARMFAENNG-LLFLETSALDSTNVELAFETV 167
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 99/166 (59%), Gaps = 9/166 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
LKV +LGD+GVGK+S+M ++V + F TIGA F+TK +Q ++L IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF++L +YRG+ ++VYD+ ++TF +L+NW E + P + + GNK D
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNKCD 122
Query: 133 -TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
TD R V ++ A ++ I + ETSAK NI+E F+ ++
Sbjct: 123 LTD---VREVMERDAKDYADSIHAI-FVETSAKNAININELFIEIS 164
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 101/162 (62%), Gaps = 7/162 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
KV++LG+ VGKTSL+ +Y NKF+ ++ T+ A F+TK+L + K V L IWDTAGQE
Sbjct: 21 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF +LG +YR ++ +LVYD+ + +F+ ++NW +E K +E C ++GNKID
Sbjct: 81 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG---NEIC-LCIVGNKID 136
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFL 174
+ R V ++A + G ++ TSAK++ I+E FL
Sbjct: 137 LE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFL 175
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 101/165 (61%), Gaps = 7/165 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
+ KV+++G+SGVGKT+L++++ N+FS + TIG +F T+ + + V QIWDTAG
Sbjct: 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ER++++ SA+YRGA +LV+D+ +T+ ++ W +E A+ +L+GNK
Sbjct: 85 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA----TIVVMLVGNK- 139
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCV 176
+D +R VP ++A + G + + ETSA + N++ AF V
Sbjct: 140 -SDLSQAREVPTEEARMFAENNG-LLFLETSALDSTNVELAFETV 182
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 101/162 (62%), Gaps = 7/162 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
KV++LG+ VGKTSL+ +Y NKF+ ++ T+ A F+TK+L + K V L IWDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF +LG +YR ++ +LVYD+ + +F+ ++NW +E K +E C ++GNKID
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG---NEIC-LCIVGNKID 122
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFL 174
+ R V ++A + G ++ TSAK++ I+E FL
Sbjct: 123 LE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFL 161
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 101/162 (62%), Gaps = 7/162 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
+ K++++G+S VGKTS + +Y + F+ + +T+G DF K + +K V LQIWDTAGQ
Sbjct: 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ER++++ +A+YRGA +L+YD+ +++F ++Q+W Q + +L+GNK
Sbjct: 83 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW----ATQIKTYSWDNAQVILVGNKC 138
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
D + RVVP +K + A + +FE SAKE+ ++ +AF
Sbjct: 139 DME--EERVVPTEKG-QLLAEQLGFDFFEASAKENISVRQAF 177
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 100/162 (61%), Gaps = 7/162 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
+ K++++G+S VGKTS + +Y + F+ + +T+G DF K + +DK + LQIWDTAGQ
Sbjct: 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ER++++ +A+YRGA +L+YD+ +++F ++Q+W Q + +L+GNK
Sbjct: 65 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS----TQIKTYSWDNAQVLLVGNKC 120
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
D + RVV ++ + + G +FE SAK++ N+ + F
Sbjct: 121 DME--DERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTF 159
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 7/170 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K +V+G +G GK+ L++Q++ NKF Q TIG +F ++ + + K V LQIWDTAGQ
Sbjct: 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+S+ ++YRGA +LVYD+ ++T+ SL W + A P +L GNK
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN----IVVILCGNKK 140
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIAL 181
D D R V +A + A + + ETSA N++EAFL A L
Sbjct: 141 DLD--PEREVTFLEASRF-AQENELMFLETSALTGENVEEAFLKCARTIL 187
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 6/166 (3%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K++++GD+ VGKT ++ ++ FS++ +TIG DF K L++ K V LQIWDTAGQ
Sbjct: 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+++ ++YR A+ +L YD+ + +F S+ +W E+ K A + +L+GNK
Sbjct: 89 ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ----LLIGNK- 143
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
+D R V +A + + ETSAK+ N++EAFL VA
Sbjct: 144 -SDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 188
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 101/172 (58%), Gaps = 17/172 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K+++ GD+ VGK+S + + N+F + AT+G DF K L +D + LQ+WDTAGQER
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
F+S+ +++R AD +L+YDV +K+F +++ W + + HE P +L+GNK D
Sbjct: 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW----VDMIEDAAHETVPIMLVGNKADI 145
Query: 134 DGGSS----RVVP----QKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
++ + VP +K A+ + A + ETSAK+ NI EA L +A
Sbjct: 146 RDTAATEGQKCVPGHFGEKLAMTYGAL-----FCETSAKDGSNIVEAVLHLA 192
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 96/164 (58%), Gaps = 7/164 (4%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K+++LGD G GK+SL+ ++V ++F + ++TIGA F ++ L ++D V +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
+ SL +YRGA ++V+DV Q +FE + W +E Q +P L GNK +
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN----MVMALAGNK--S 127
Query: 134 DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
D +R V + A + G + + ETSAK N+ E F +A
Sbjct: 128 DLLDARKVTAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIA 170
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 106/181 (58%), Gaps = 16/181 (8%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDK----------LV 61
L+K++ LGDSGVGKT+ + +Y NKF+ ++ T+G DF K + + + V
Sbjct: 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 62 TLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEA 121
LQ+WDTAGQERF+SL +AF+R A +L++D+ Q++F +++NW + A E
Sbjct: 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCEN 141
Query: 122 CPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIAL 181
VL+GNK D R V +++A E G IPYFETSA N+++A + ++ +
Sbjct: 142 PDIVLIGNKADLP--DQREVNERQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIM 198
Query: 182 K 182
K
Sbjct: 199 K 199
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 113 bits (282), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 97/162 (59%), Gaps = 7/162 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
+ K++++G+S VGKTS + +Y + F+ + +T+G DF K + DK + LQIWDTAGQ
Sbjct: 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ER++++ +A+YRGA +L+YD+ Q++F ++Q+W Q + +L+GNK
Sbjct: 82 ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDW----ATQIKTYSWDNAQVILVGNKC 137
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
D + RVVP + G +FE SAKE+ N+ + F
Sbjct: 138 DLE--DERVVPAEDGRRLADDLG-FEFFEASAKENINVKQVF 176
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 106/185 (57%), Gaps = 16/185 (8%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDK----------LV 61
L+K++ LGDSGVGKT+ + +Y NKF+ ++ T+G DF K + D + V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 62 TLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEA 121
LQ+WDTAG ERF+SL +AF+R A +L++D+ Q++F +++NW + A E
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCEN 127
Query: 122 CPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIAL 181
VL+GNK D R V +++A E G IPYFETSA N++++ + ++ +
Sbjct: 128 PDIVLIGNKADLP--DQREVNERQARELAEKYG-IPYFETSAATGQNVEKSVETLLDLIM 184
Query: 182 KNEHK 186
K K
Sbjct: 185 KRMEK 189
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 106/185 (57%), Gaps = 16/185 (8%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDK----------LV 61
L+K++ LGDSGVGKT+ + +Y NKF+ ++ T+G DF K + D + V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 62 TLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEA 121
LQ+WDTAG ERF+SL +AF+R A +L++D+ Q++F +++NW + A E
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCEN 127
Query: 122 CPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIAL 181
VL+GNK D R V +++A E G IPYFETSA N++++ + ++ +
Sbjct: 128 PDIVLIGNKADLP--DQREVNERQARELAEKYG-IPYFETSAATGQNVEKSVETLLDLIM 184
Query: 182 KNEHK 186
K K
Sbjct: 185 KRMEK 189
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 103/178 (57%), Gaps = 8/178 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K +V+G++G GK+ L++Q++ KF TIG +F +K + + K V LQIWDTAGQ
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+S+ ++YRGA +LVYD+ ++T+ +L NW L A + +L GNK
Sbjct: 70 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNKK 125
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFL-CVAEIALKNEHKDI 188
D D + R V +A + A + + ETSA N++EAF+ C +I K E ++
Sbjct: 126 DLD--ADREVTFLEASRF-AQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL 180
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 98/165 (59%), Gaps = 7/165 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++ LG+ VGKTSL+ +++Y+ F Y+ATIG DF++K + ++D+ V LQ+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF+SL ++ R + V+VYD+ +F+ W ++ + + G +L+GNK
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV--RTERGSD--VIIMLVGNK-- 115
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
TD R V ++ E A N+ + ETSAK N+ + F VA
Sbjct: 116 TDLADKRQVSIEEG-ERKAKELNVMFIETSAKAGYNVKQLFRRVA 159
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 7/165 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++ LG+ VGKTSL+ +++Y+ F Y+ATIG DF++K + ++D+ V LQ+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF+SL ++ R + V+VYD+ +F W ++ + + G +L+GNK
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV--RTERGSD--VIIMLVGNK-- 128
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
TD R V ++ E A N+ + ETSAK N+ + F VA
Sbjct: 129 TDLSDKRQVSTEEG-ERKAKELNVMFIETSAKAGYNVKQLFRRVA 172
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 104/185 (56%), Gaps = 16/185 (8%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDK----------LV 61
L+K++ LGDSGVGKT+ + +Y NKF+ ++ T+G DF K + D + V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 62 TLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEA 121
LQ+WDTAG ERF+SL +AF+R A +L +D+ Q++F +++NW + A E
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANA---YCEN 127
Query: 122 CPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIAL 181
VL+GNK D R V +++A E G IPYFETSA N++++ + ++
Sbjct: 128 PDIVLIGNKADLP--DQREVNERQARELAEKYG-IPYFETSAATGQNVEKSVETLLDLIX 184
Query: 182 KNEHK 186
K K
Sbjct: 185 KRXEK 189
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 104/185 (56%), Gaps = 16/185 (8%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDK----------LV 61
L+K++ LGDSGVGKT+ + +Y NKF+ ++ T+G DF K + D + V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 62 TLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEA 121
LQ+WDTAG ERF+SL +AF+R A +L +D+ Q++F +++NW + A E
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANA---YCEN 127
Query: 122 CPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIAL 181
VL+GNK D R V +++A E G IPYFETSA N++++ + ++
Sbjct: 128 PDIVLIGNKADLP--DQREVNERQARELAEKYG-IPYFETSAATGQNVEKSVETLLDLIX 184
Query: 182 KNEHK 186
K K
Sbjct: 185 KRXEK 189
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 100/167 (59%), Gaps = 7/167 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++G+S VGKTS + +Y + F+ + +T+G DF K + +DK + LQIWDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R++++ +A+YRGA +L YD+ +++F ++Q+W Q + +L+GNK D
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWS----TQIKTYSWDNAQVLLVGNKCD 124
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEI 179
+ RVV ++ + + G +FE SAK++ N+ + F + ++
Sbjct: 125 XE--DERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDV 168
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 104/187 (55%), Gaps = 16/187 (8%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD----------DKLV 61
L+K + LGDSGVGKTS++ QY KF+ ++ T+G DF K + + +
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 62 TLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEA 121
LQ+WDTAG ERF+SL +AF+R A +L++D+ +++F +++NW + A E
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA---YSEN 127
Query: 122 CPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIAL 181
VL GNK D + R V +++A E A + IPYFETSA NI A + ++ +
Sbjct: 128 PDIVLCGNKSDLE--DQRAVKEEEARE-LAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184
Query: 182 KNEHKDI 188
K + +
Sbjct: 185 KRMERSV 191
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 98/165 (59%), Gaps = 7/165 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++ LG+ VGKTSL+ +++Y+ F Y+ATIG DF++K + ++D+ + LQ+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF+SL ++ R + V+VYD+ +F+ W ++ + + G +L+GNK
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV--RTERGSD--VIIMLVGNK-- 120
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
TD R V ++ E A N+ + ETSAK N+ + F VA
Sbjct: 121 TDLADKRQVSIEEG-ERKAKELNVMFIETSAKAGYNVKQLFRRVA 164
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 100/170 (58%), Gaps = 7/170 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++ LG+ VGKTSL+ +++Y+ F Y+ATIG DF++K + ++D+ V LQ+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF+SL ++ R + V+VYD+ +F+ W ++ + + G +L+GNK
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDV--RTERGSD--VIIMLVGNK-- 116
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
TD R + ++ E A ++ + ETSAK N+ + F VA L+
Sbjct: 117 TDLADKRQITIEEG-EQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 101/172 (58%), Gaps = 7/172 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
+ K I++GD GVGK+ L++Q+ KF TIG +F T+ +++ + + LQIWDTAGQ
Sbjct: 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+++ ++YRGA ++VYD+ + T+ L +W + +P +L+GNK
Sbjct: 75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN----TVIILIGNKA 130
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKN 183
D + + R V ++A ++ G + + E SAK N+++AFL A+ +N
Sbjct: 131 DLE--AQRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQN 179
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 97/165 (58%), Gaps = 7/165 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++ LG+ VGKTSL+ +++Y+ F Y+ATIG DF++K + ++D+ V LQ+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF+SL ++ R + V+VYD+ +F+ W ++ + + G +L+GNK
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV--RTERGSD--VIIMLVGNK-- 120
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
TD R V ++ E A N+ + ETSAK N+ + F VA
Sbjct: 121 TDLADKRQVSIEEG-ERKAKELNVMFIETSAKAGYNVKQLFRRVA 164
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 8/169 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K +V+G++G GK+ L++Q++ KF TIG +F +K + + K V LQIWDTAGQ
Sbjct: 11 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+S+ ++YRGA +LVYD+ ++T+ +L NW L A + +L GNK
Sbjct: 71 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNKK 126
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFL-CVAEI 179
D D + R V +A + A + + ETSA +++EAF+ C +I
Sbjct: 127 DLD--ADREVTFLEASRF-AQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 96/164 (58%), Gaps = 7/164 (4%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++ LG+ VGKTS++ ++ Y+ F Y++TIG DF++K L +D+ V LQ+WDTAGQER
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
F+SL ++ R + ++VYD+ +++FE+ W ++ L + + L+GNK T
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE----RGKDVIIALVGNK--T 116
Query: 134 DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
D G R V ++ + A N + ETSAK NI F A
Sbjct: 117 DLGDLRKVTYEEGXQ-KAQEYNTXFHETSAKAGHNIKVLFKKTA 159
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 113/208 (54%), Gaps = 23/208 (11%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++ LG+ VGKTSL+ +++Y+ F Y+ATIG DF++K + ++D+ + LQ+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF+SL ++ R + V+VYD+ +F+ W ++ + + G +L+GNK
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV--RTERGSD--VIIMLVGNK-- 127
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA------EIALKNEHK 186
TD R V ++ E A N+ + ETSAK N+ + F VA E +
Sbjct: 128 TDLADKRQVSIEEG-ERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRE 186
Query: 187 DI----YYQPQGISETVSEVEQRGGCAC 210
D+ +PQ + VSE GGC+C
Sbjct: 187 DMIDIKLEKPQ--EQPVSE----GGCSC 208
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 7/165 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++ LG+ VGKTSL+ +++Y+ F Y+ATIG DF++K + ++D+ V LQ+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF+SL ++ R + V+VYD+ +F+ W ++ + +L+GNK
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLVGNK-- 130
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
TD R V ++ E A N+ + ETSAK N+ + F VA
Sbjct: 131 TDLADKRQVSIEEG-ERKAKELNVMFIETSAKAGYNVKQLFRRVA 174
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 100/172 (58%), Gaps = 7/172 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
+ K I++GD GVGK+ L++Q+ KF TIG +F T+ +++ + + LQIWDTAGQ
Sbjct: 30 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 89
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
RF+++ ++YRGA ++VYD+ + T+ L +W + +P +L+GNK
Sbjct: 90 GRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN----TVIILIGNKA 145
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKN 183
D + + R V ++A ++ G + + E SAK N+++AFL A+ +N
Sbjct: 146 DLE--AQRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQN 194
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 98/169 (57%), Gaps = 8/169 (4%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L K +V+G++G GK+ L++Q++ KF TIG +F +K + + K V LQIWDTAG
Sbjct: 8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
ERF+S+ ++YRGA +LVYD+ ++T+ +L NW L A + +L GNK
Sbjct: 68 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNKK 123
Query: 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFL-CVAEI 179
D D + R V +A + A + + ETSA +++EAF+ C +I
Sbjct: 124 DLD--ADREVTFLEASRF-AQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 90/152 (59%), Gaps = 7/152 (4%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
LK++++G+SGVGK+SL+ ++ + F + ATIG DF K + +D L IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF++L ++YRGA +LVYDV + TF L NW E + L+GNKID
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND---IVNXLVGNKID 132
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAK 164
+ +R V + + L++ A + + + E SAK
Sbjct: 133 KE---NREVDRNEGLKF-ARKHSXLFIEASAK 160
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 82/118 (69%), Gaps = 4/118 (3%)
Query: 15 VIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERF 74
++++GDSGVGK+ L+ ++ + +++ Y +TIG DF + +++D K + LQIWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 75 QSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+++ S++YRGA ++VYDV Q++F +++ W L++ D E +L+GNK D
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQW----LQEIDRYASENVNKLLVGNKCD 114
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 99/174 (56%), Gaps = 10/174 (5%)
Query: 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDT 68
R + K+IV+GDS VGKT L ++ +F + +ATIG DF + + +D + + +Q+WDT
Sbjct: 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDT 76
Query: 69 AGQERFQ-SLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLL 127
AGQERF+ S+ +YR V VYD+ +F SL W EE + + P +L+
Sbjct: 77 AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILV 133
Query: 128 GNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK---EDCNIDEAFLCVAE 178
GNK D S+ VP A ++ A ++P FETSAK ++ +++ F+ +A
Sbjct: 134 GNKCDLR--SAIQVPTDLAQKF-ADTHSMPLFETSAKNPNDNDHVEAIFMTLAH 184
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 88/157 (56%), Gaps = 7/157 (4%)
Query: 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDT 68
R + K+IV+GDS VGKT L ++ +F + +ATIG DF + + +D + + +Q+WDT
Sbjct: 26 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDT 85
Query: 69 AGQERFQ-SLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLL 127
AGQERF+ S+ +YR V VYD +F SL W EE + + P +L+
Sbjct: 86 AGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAND---IPRILV 142
Query: 128 GNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK 164
GNK D S+ VP A ++ A + P FETSAK
Sbjct: 143 GNKCDLR--SAIQVPTDLAQKF-ADTHSXPLFETSAK 176
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 91/170 (53%), Gaps = 10/170 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKL-VTLQIWDTAGQ 71
LK++VLGD GKTSL + F +QYK TIG DF + + + L VTLQIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFV-LLGNK 130
+ + GA +LVYD+ ++FE+L++W K ++ E E P V L+GNK
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSE--ESETQPLVALVGNK 124
Query: 131 IDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIA 180
ID + R + +K L +C G +F SAK D FLC ++A
Sbjct: 125 IDLE--HMRTIKPEKHLRFCQENGFSSHF-VSAKTG---DSVFLCFQKVA 168
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ +F ++Y AT+G + + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+F L +Y A C ++++DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 125
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
R V K + + N+ Y++ SAK + N ++ FL +A
Sbjct: 126 I---KDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 10/165 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ +F ++Y AT+G + + + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+F L +Y A C ++++DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 130
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
R V K + + N+ Y++ SAK + N ++ FL +A
Sbjct: 131 I---KDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLA 170
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ +F ++Y AT+G + + + +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+F L +Y A C ++++DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 118
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
R V K + + N+ Y++ SAK + N ++ FL +A
Sbjct: 119 I---KDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLAR 159
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 10/165 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ +F ++Y AT+G + + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+F L +Y A C ++++DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 125
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
R V K + + N+ Y++ SAK + N ++ FL +A
Sbjct: 126 I---KDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLA 165
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 10/165 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ +F ++Y AT+G + + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+F L +Y A C ++++DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 125
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
R V K + + N+ Y++ SAK + N ++ FL +A
Sbjct: 126 I---KDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLA 165
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 95/180 (52%), Gaps = 10/180 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ +F ++Y AT+G + + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+F L +Y A C ++++DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 125
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEHKDIYYQP 192
R V K + + N+ Y++ SAK + N ++ FL +A + + + + P
Sbjct: 126 I---KDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++V+G GVGK++L Q + N F +Y TI D K++ +D + L I DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 64
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
+ ++ + R + + V+ +N K+FE + ++RE+ + D E P VL+GNK D
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS---EDVPMVLVGNKSDL 121
Query: 134 DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEHK 186
SR V K+A + G IP+ ETSAK +D+AF + K++ K
Sbjct: 122 ---PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 14/164 (8%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++VLG GVGK++L Q+V F ++Y TI D K++++D + L+I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
F ++ + + LVY + Q TF LQ+ RE+ L+ D E P +L+GNK D
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT---EDVPMILVGNKCDL 120
Query: 134 DGGSSRVV----PQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+ RVV Q A +WC N + E+SAK N++E F
Sbjct: 121 E--DERVVGKEQGQNLARQWC----NCAFLESSAKSKINVNEIF 158
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 14/164 (8%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++VLG GVGK++L Q+V F +Y TI D K++++D + L+I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTI-EDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
F ++ + + LVY + Q TF LQ+ RE+ L+ D E P +L+GNK D
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT---EDVPMILVGNKCDL 120
Query: 134 DGGSSRVV----PQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+ RVV Q A +WC N + E+SAK N++E F
Sbjct: 121 E--DERVVGKEQGQNLARQWC----NCAFLESSAKSKINVNEIF 158
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ +F ++Y AT+G + + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+F L +Y A C ++ +DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 125
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
R V K + + N+ Y++ SAK + N ++ FL +A
Sbjct: 126 I---KDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLA 165
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 89/166 (53%), Gaps = 10/166 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ +F ++Y T+G + + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+F L +Y A C ++++DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 125
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
R V K + + N+ Y++ SAK + N ++ FL +A
Sbjct: 126 I---KDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 90/165 (54%), Gaps = 10/165 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ +F ++Y AT+G + + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
++ L +Y A C ++++DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 125
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
R V K + + N+ Y++ SAK + N ++ FL +A
Sbjct: 126 I---KDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLA 165
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ +F ++Y T+G + + + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+F L +Y A C ++++DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 125
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
R V K + + N+ Y++ SAK + N ++ FL +A
Sbjct: 126 I---KDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLA 165
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 8/160 (5%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++V+G GVGK++L Q + N F +Y TI D K++ +D + L I DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 64
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
+ ++ + R + + V+ +N K+FE + ++RE+ + D E P VL+GNK D
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS---EDVPMVLVGNKCDL 121
Query: 134 DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
SR V K+A + G IP+ ETSAK +D+AF
Sbjct: 122 ---PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAF 157
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 11/165 (6%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L KVI++G GVGK++L Q++Y++F + Y+ T AD K++ +D + V + I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 72
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
E + ++ ++R + + V+ + ++F + ++RE+ L+ E E PF+L+GNK
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR---VKEDENVPFLLVGNKS 129
Query: 132 DTDGGSSRVVPQKK--ALEWCAYRGNIPYFETSAKEDCNIDEAFL 174
D + V + K A +W N+ Y ETSAK N+D+ F
Sbjct: 130 DLEDKRQVSVEEAKNRAEQW-----NVNYVETSAKTRANVDKVFF 169
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 11/165 (6%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L KVI++G GVGK++L Q++Y++F + Y+ T AD K++ +D + V + I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
E + ++ ++R + + V+ + ++F + ++RE+ L+ E E PF+L+GNK
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR---VKEDENVPFLLVGNKS 133
Query: 132 DTDGGSSRVVPQKK--ALEWCAYRGNIPYFETSAKEDCNIDEAFL 174
D + V + K A +W N+ Y ETSAK N+D+ F
Sbjct: 134 DLEDKRQVSVEEAKNRAEQW-----NVNYVETSAKTRANVDKVFF 173
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 11/165 (6%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L KVI++G GVGK++L Q++Y++F + Y+ T AD K++ +D + V + I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 64
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
E + ++ ++R + + V+ + ++F + ++RE+ L+ E E PF+L+GNK
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR---VKEDENVPFLLVGNKS 121
Query: 132 DTDGGSSRVVPQKK--ALEWCAYRGNIPYFETSAKEDCNIDEAFL 174
D + V + K A +W N+ Y ETSAK N+D+ F
Sbjct: 122 DLEDKRQVSVEEAKNRAEQW-----NVNYVETSAKTRANVDKVFF 161
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++VLG GVGK++L Q+V F ++Y TI D K++++D + L+I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQ 63
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
F ++ + + LVY + Q TF LQ+ RE+ L+ D + P +L+GNK D
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDD---VPMILVGNKCDL 120
Query: 134 DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+ RVV +++ N + E+SAK N++E F
Sbjct: 121 E--DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 94/180 (52%), Gaps = 10/180 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ +F ++Y AT+G + + + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+F L +Y A C ++++DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 127
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEHKDIYYQP 192
R V K + + N+ Y++ SAK + N ++ FL +A + + + + P
Sbjct: 128 I---KDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 182
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 94/180 (52%), Gaps = 10/180 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ +F ++Y AT+G + + + +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+F L +Y A C ++++DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 121
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEHKDIYYQP 192
R V K + + N+ Y++ SAK + N ++ FL +A + + + + P
Sbjct: 122 I---KDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 176
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++VLG GVGK++L Q+V F ++Y TI D K++++D + L+I DTAG E+
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQ 65
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
F ++ + + LVY + Q TF LQ+ RE+ L+ D + P +L+GNK D
Sbjct: 66 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDD---VPMILVGNKCDL 122
Query: 134 DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+ RVV +++ N + E+SAK N++E F
Sbjct: 123 E--DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 11/165 (6%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L KVI++G GVGK++L Q++Y++F + Y+ T AD K++ +D + V + I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
E + ++ ++R + + V+ + ++F + ++RE+ L+ E E PF+L+GNK
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR---VKEDENVPFLLVGNKS 119
Query: 132 DTDGGSSRVVPQKK--ALEWCAYRGNIPYFETSAKEDCNIDEAFL 174
D + V + K A +W N+ Y ETSAK N+D+ F
Sbjct: 120 DLEDKRQVSVEEAKNRADQW-----NVNYVETSAKTRANVDKVFF 159
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ +F ++Y AT+G + + + +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+F L +Y A C ++++DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 125
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
R V K + + N+ Y++ SAK + N ++ FL +A
Sbjct: 126 I---KDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLA 165
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 10/192 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ +F ++Y ATIG + + + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+F L +Y A C ++++DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 127
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEHKDIYYQP 192
R V K + N+ Y++ SAK + N ++ FL +A N + P
Sbjct: 128 V---KERKVKAKTIT--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASP 182
Query: 193 QGISETVSEVEQ 204
V EQ
Sbjct: 183 ALAPPEVQVDEQ 194
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 10/166 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ +F ++Y ATIG + + + +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+F L +Y A C ++++DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 120
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
R V K + N+ Y++ SAK + N ++ FL +A
Sbjct: 121 V---KERKVKAKTIT--FHRKKNLQYYDISAKSNYNFEKPFLWLAR 161
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ + ++Y AT+G + + + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+F L +Y A C ++++DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 130
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
R V K + + N+ Y++ SAK + N ++ FL +A
Sbjct: 131 I---KDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLA 170
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 10/166 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
K++++GD G GKT+ + +++ +F ++Y ATIG + + + +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+F L +Y A C ++++DV + T++++ NW + ++ E P VL GNK+D
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVD 119
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
R V K + N+ Y++ SAK + N ++ FL +A
Sbjct: 120 V---KERKVKAKTIT--FHRKKNLQYYDISAKSNYNFEKPFLWLAR 160
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 91/176 (51%), Gaps = 9/176 (5%)
Query: 6 NMKRRNL-LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGA-DFVTKELQMDDKLVTL 63
+M+RR L K+ ++GD GVGKT+ +N+ + +F + Y AT+GA + L ++
Sbjct: 4 SMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKF 63
Query: 64 QIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACP 123
+WDTAGQE+ L +Y GA +L +DV + T ++L W +EF QA G P
Sbjct: 64 NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF--QAVVGNE--AP 119
Query: 124 FVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEI 179
V+ NKID +R KK + N YFE SAK N FL +A I
Sbjct: 120 IVVCANKIDI---KNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARI 172
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 8/160 (5%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++V+G GVGK++L Q + N F +Y TI D K++ +D + L I DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
+ ++ + R + + V+ +N K+FE + +RE+ + D + P VL+GNK D
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL 120
Query: 134 DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
G R V ++A + G IPY ETSAK +++AF
Sbjct: 121 AG---RTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 94/167 (56%), Gaps = 14/167 (8%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L KVI++G GVGK++L Q++Y++F + Y+ T AD K++ +D + V + I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 65
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
E + ++ ++R + +LV+ + ++F + +RE+ L+ E + P +++GNK
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRV--KAEEDKIPLLVVGNKS 123
Query: 132 DTDGGSSRVVP----QKKALEWCAYRGNIPYFETSAKEDCNIDEAFL 174
D + R VP + KA EW + Y ETSAK N+D+ F
Sbjct: 124 DLE--ERRQVPVEEARSKAEEW-----GVQYVETSAKTRANVDKVFF 163
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 94/167 (56%), Gaps = 14/167 (8%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L KVI++G GVGK++L Q++Y++F + Y+ T AD K++ +D + V + I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 61
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
E + ++ ++R + +LV+ + ++F + +RE+ L+ E + P +++GNK
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRV--KAEEDKIPLLVVGNKS 119
Query: 132 DTDGGSSRVVP----QKKALEWCAYRGNIPYFETSAKEDCNIDEAFL 174
D + R VP + KA EW + Y ETSAK N+D+ F
Sbjct: 120 DLE--ERRQVPVEEARSKAEEW-----GVQYVETSAKTRANVDKVFF 159
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 94/165 (56%), Gaps = 11/165 (6%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L KVI++G GVGK++L Q++Y++F + Y+ T AD K++ +D + V + I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 64
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
E + ++ ++R + + V+ + ++F + ++RE+ L+ E E PF+L+GNK
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR---VKEDENVPFLLVGNKS 121
Query: 132 DTDGGSSRVVPQKK--ALEWCAYRGNIPYFETSAKEDCNIDEAFL 174
D + V + K A +W N+ Y ETSAK N+D+ F
Sbjct: 122 DLEDKRQVSVEEAKNRAEQW-----NVNYVETSAKTRANVDKVFF 161
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 8/160 (5%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++V+G GVGK++L Q + N F +Y TI D K++ +D + L I DTAGQE
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
+ ++ + R + + V+ +N K+FE + +RE+ + D + P VL+GNK D
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL 120
Query: 134 DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
++R V ++A + G IPY ETSAK +++AF
Sbjct: 121 ---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 8/160 (5%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++V+G GVGK++L Q + N F +Y TI D K++ +D + L I DTAGQE
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
+ ++ + R + + V+ +N K+FE + +RE+ + D + P VL+GNK D
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL 120
Query: 134 DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
++R V ++A + G IPY ETSAK +++AF
Sbjct: 121 ---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 8/160 (5%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++V+G GVGK++L Q + N F +Y TI D K++ +D + L I DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
+ ++ + R + + V+ +N K+FE + +RE+ + D + P VL+GNK D
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL 120
Query: 134 DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
++R V ++A + G IPY ETSAK +++AF
Sbjct: 121 ---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 13/188 (6%)
Query: 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQI 65
+M +K + +GD VGKT ++ Y NKF Y T+ +F + + +D ++V L +
Sbjct: 3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGL 61
Query: 66 WDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFES-LQNWREEFLKQADPGEHEACPF 124
WDTAGQE + L YRGAD VL + + + ++E+ L+ W E L++ P P
Sbjct: 62 WDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPE-LRRFAPN----VPI 116
Query: 125 VLLGNKIDT--DGG----SSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
VL+G K+D D G + V+ + E G Y E S+K N+ F +
Sbjct: 117 VLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 176
Query: 179 IALKNEHK 186
+ L+ +
Sbjct: 177 VVLQPPRR 184
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 8/162 (4%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + ++RE+ + D E P VL+GNK D SR V K
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDS---EDVPMVLVGNKSDL---PSRTVDTK 129
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEHK 186
+A + G IP+ ETSAK +D+AF + K++ K
Sbjct: 130 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 8/162 (4%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + ++RE+ + D E P VL+GNK D SR V K
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDS---EDVPMVLVGNKSDL---PSRTVDTK 129
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEHK 186
+A + G IP+ ETSAK +D+AF + K++ K
Sbjct: 130 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 15/185 (8%)
Query: 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIW 66
M +K + +GD VGKT ++ Y N F Y T+ +F + + +D V L +W
Sbjct: 1 MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLW 59
Query: 67 DTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFV 125
DTAGQE + L YRGAD +L + + + ++E++ + W E LK PG P V
Sbjct: 60 DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPE-LKHYAPG----IPIV 114
Query: 126 LLGNKIDT--------DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
L+G K+D D + + + E G + Y E S+K N+ F
Sbjct: 115 LVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAI 174
Query: 178 EIALK 182
+AL+
Sbjct: 175 RVALR 179
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 8/162 (4%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAG E + ++ + R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + ++RE+ + D E P VL+GNK D SR V K
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDS---EDVPMVLVGNKCDL---PSRTVDTK 146
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEHK 186
+A + G IP+ ETSAK +D+AF + K++ K
Sbjct: 147 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 187
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 23/189 (12%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+KV+++GD G GKTSL+ + F + Y T+ ++ LQ+ K V L IWDTAGQ+
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQN-WREE---FLKQADPGEHEACPFVLLG 128
+ L FY A +L +DV +F+++ N W E F K+ P +++G
Sbjct: 94 DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKV--------PIIVVG 145
Query: 129 NKIDTDGGSSRVVP-QKKALEWCAYR---------GNIPYFETSAKEDCNIDEAFLCVAE 178
K D S V ++ LE Y G + Y E SA+ N+ F AE
Sbjct: 146 CKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205
Query: 179 IALKNEHKD 187
+AL + ++
Sbjct: 206 VALSSRGRN 214
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 81/151 (53%), Gaps = 11/151 (7%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q+V F ++Y TI DF KE+++D L+I DTAG E+F S+ + +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+LVY + Q++F+ ++ R++ ++ +E P +L+GNK+D + +
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVK---RYEKVPVILVGNKVDLESEREVSSSEG 131
Query: 145 KAL--EWCAYRGNIPYFETSAKEDCNIDEAF 173
+AL EW P+ ETSAK +DE F
Sbjct: 132 RALAEEWGC-----PFMETSAKSKTMVDELF 157
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 47/214 (21%)
Query: 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQM---------- 56
M++++ K ++LG+S VGK+S++ + + F + TIGA F T + +
Sbjct: 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61
Query: 57 -------------------------DDKL--VTLQIWDTAGQERFQSLGSAFYRGADCCV 89
++ L + IWDTAGQER+ S+ +YRGA C +
Sbjct: 62 NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121
Query: 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEW 149
+V+D++ T + + W + ++ +L+ NKID + ++ +K
Sbjct: 122 VVFDISNSNTLDRAKTWVNQLKISSNY------IIILVANKIDKNKFQVDILEVQKY--- 172
Query: 150 CAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKN 183
A N+ + +TSAK NI F +AE KN
Sbjct: 173 -AQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D ++ L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 15/185 (8%)
Query: 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIW 66
M +K + +GD VGKT ++ Y N F Y T+ +F + + +D V L +W
Sbjct: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLW 59
Query: 67 DTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFV 125
DTAGQE + L YRGAD +L + + + ++E++ + W E L+ PG P +
Sbjct: 60 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAPG----VPII 114
Query: 126 LLGNKID--------TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
L+G K+D D + + + E G+ Y E S+K N+ F
Sbjct: 115 LVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAI 174
Query: 178 EIALK 182
++ L+
Sbjct: 175 KVVLQ 179
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 135
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAFLCV 176
+A + G IPY ETSAK +++AF +
Sbjct: 136 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTL 166
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F ++Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKSDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAFLCV 176
+A + G IPY ETSAK +++AF +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTL 159
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 133
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAF 161
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 133
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAF 161
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 15/186 (8%)
Query: 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQI 65
+M +K + +GD VGKT L+ Y N F Y T+ +F + + ++ V L +
Sbjct: 2 SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGL 60
Query: 66 WDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPF 124
WDTAGQE + L YRGAD +L + + + ++E++ + W E LK PG P
Sbjct: 61 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAPG----VPI 115
Query: 125 VLLGNKIDTDGGSSRVVPQKKALEWCAYRGN--------IPYFETSAKEDCNIDEAFLCV 176
VL+G K+D + A+ +G Y E S+K N+ F
Sbjct: 116 VLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAA 175
Query: 177 AEIALK 182
+ L+
Sbjct: 176 IRVVLQ 181
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAFLCV 176
+A + G IPY ETSAK +++AF +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTL 159
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI + K++ +D + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K +L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 7/158 (4%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q++ + F Y TI D TK+ +DD+ L I DTAGQE F ++ + R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTI-EDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ +LV+ V + +FE + ++ + L+ D E P +L+GNK D D R V Q+
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDE---FPMILIGNKADLD--HQRQVTQE 131
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
+ + A + + Y E SAK N+D+AF + + K
Sbjct: 132 EG-QQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GN+ D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNRCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y +I D K++ +D + L I DTAGQE + ++ + R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 134
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAFLCV 176
+A + G IPY ETSAK +++AF +
Sbjct: 135 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTL 165
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y +I D K++ +D + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DT GQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
+A + G IPY ETSAK +++AF +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAG+E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTA QE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKXDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAFLCV 176
+A + G IPY ETSAK +++AF +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTL 159
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTA QE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKXDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAFLCV 176
+A + G IPY ETSAK +++AF +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTL 159
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F ++ TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DT GQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
+A + G IPY ETSAK +++AF +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAFLCV 176
+A + G IPY ETSAK +++AF +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTL 159
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAG E + ++ + R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 133
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAF 161
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 8/150 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q+ F +Y TI ++ K ++D++ L + DTAGQE F ++ + R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
D ++VY V + +FE + + + L+ D E+ P +L+ NK+D R V +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKD---RESFPMILVANKVDL--MHLRKVTRD 144
Query: 145 KALEWCAYRGNIPYFETSAKE-DCNIDEAF 173
+ E A + NIPY ETSAK+ N+D+ F
Sbjct: 145 QGKE-MATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 8/150 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q+ F +Y TI D K ++D++ L + DTAGQE F ++ + R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTI-EDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
D ++VY V + +FE + + + L+ D E+ P +L+ NK+D R V +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKD---RESFPMILVANKVDL--MHLRKVTRD 144
Query: 145 KALEWCAYRGNIPYFETSAKE-DCNIDEAF 173
+ E A + NIPY ETSAK+ N+D+ F
Sbjct: 145 QGKE-MATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKCDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 8/150 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q+ F Y TI ++ K ++D++ L + DTAGQE F ++ + R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
D ++VY V + +FE + + + L+ D E+ P +L+ NK+D R V +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKD---RESFPMILVANKVDL--MHLRKVTRD 144
Query: 145 KALEWCAYRGNIPYFETSAKE-DCNIDEAF 173
+ E A + NIPY ETSAK+ N+D+ F
Sbjct: 145 QGKE-MATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 8/150 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q+ F Y TI ++ K ++D++ L + DTAGQE F ++ + R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
D ++VY V + +FE + + + L+ D E+ P +L+ NK+D R V +
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKD---RESFPMILVANKVDL--MHLRKVTRD 139
Query: 145 KALEWCAYRGNIPYFETSAKE-DCNIDEAF 173
+ E A + NIPY ETSAK+ N+D+ F
Sbjct: 140 QGKE-MATKYNIPYIETSAKDPPLNVDKTF 168
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F +Y TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+F + +RE+ + D + P VL+GNK D +R V K
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDD---VPMVLVGNKCDL---PTRTVDTK 146
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177
+A E G IP+ ETSAK +++AF +
Sbjct: 147 QAHELAKSYG-IPFIETSAKTRQGVEDAFYTLV 178
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q++ + F Y TI D TK +D L I DTAGQE F ++ + R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+LV+ +N +++F + + L+ D + P VL+GNK D + S R VP+
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKD---RDDFPVVLVGNKADLE--SQRQVPRS 135
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + A ++ YFE SAK N+DEAF
Sbjct: 136 EASAFGASH-HVAYFEASAKLRLNVDEAF 163
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K++L Q + N F + TI D K++ +D + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDECDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144
+ + V+ +N K+FE + +RE+ + D + P VL+GNK D ++R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKSDL---AARTVESR 128
Query: 145 KALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+A + G IPY ETSAK +++AF
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAF 156
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 24/194 (12%)
Query: 1 MDISVNMKRRNLLKVIVLGDSGVGKTSLMNQYVY--NKFSQQYKATIGADFVTKELQMDD 58
+DI+ ++ KV V+G++ VGK++L++ + +KF + Y T G + V + + D
Sbjct: 13 IDITATLR----CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPD 68
Query: 59 KLVTLQIW--DTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADP 116
V+++++ DTAG + ++ S ++ G +LV+DV+ ++FES + W E LK A P
Sbjct: 69 TTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARP 127
Query: 117 GEHEACPFVLLGNKIDTDGGSSRVVPQKK------ALEWCAYRGNIPYFETSAKEDC-NI 169
VL+ NK D + PQ+ A +W A + +F+ SA +
Sbjct: 128 DRERPLRAVLVANKTD-------LPPQRHQVRLDMAQDW-ATTNTLDFFDVSANPPGKDA 179
Query: 170 DEAFLCVAEIALKN 183
D FL +A +N
Sbjct: 180 DAPFLSIATTFYRN 193
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 6/163 (3%)
Query: 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70
N +V V G GVGK+SL+ ++V F + Y T+ D + + D + TLQI DT G
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-EDTYRQVISCDKSICTLQITDTTG 60
Query: 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130
+F ++ +LVY + +++ E L+ E+ + G+ E+ P +L+GNK
Sbjct: 61 SHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIK--GDVESIPIMLVGNK 118
Query: 131 IDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
D SR V +A E A + ETSAK + N+ E F
Sbjct: 119 CDE--SPSREVQSSEA-EALARTWKCAFMETSAKLNHNVKELF 158
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 7/165 (4%)
Query: 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTA 69
+ LK++V+GD VGKT L+ + + Y T+ +F + ++ ++ L +WDTA
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTA 79
Query: 70 GQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQN-WREEFLKQADPGEHEACPFVLLG 128
GQE + L Y +D +L + VN + +F+++ W E D + VL+G
Sbjct: 80 GQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT-----VLVG 134
Query: 129 NKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
K+D S V +++ + C G + Y E S+ ++E F
Sbjct: 135 LKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 7/165 (4%)
Query: 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTA 69
+ LK++V+GD VGKT L+ + + Y T+ +F + ++ ++ L +WDTA
Sbjct: 20 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTA 78
Query: 70 GQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQN-WREEFLKQADPGEHEACPFVLLG 128
GQE + L Y +D +L + VN + +F+++ W E D + VL+G
Sbjct: 79 GQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT-----VLVG 133
Query: 129 NKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
K+D S V +++ + C G + Y E S+ ++E F
Sbjct: 134 LKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 64
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E P +L+G K+
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 119
Query: 132 D 132
D
Sbjct: 120 D 120
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N FS +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 72
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E ++ P P +L+G K+
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCPN----TPIILVGTKL 127
Query: 132 D 132
D
Sbjct: 128 D 128
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ + ++F + Y T+ ++V ++++D K V L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 67
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 122
Query: 133 --TDGGSSRVVPQKK--------ALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
D + R + + K + G Y E SAK + E F AL+
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 66
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E P +L+G K+
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 121
Query: 132 D 132
D
Sbjct: 122 D 122
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E P +L+G K+
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 132 D 132
D
Sbjct: 118 D 118
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E ++ P P +L+G K+
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPE-VRHHCPNT----PIILVGTKL 117
Query: 132 D 132
D
Sbjct: 118 D 118
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ + ++F + Y T+ ++V ++++D K V L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 66
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 121
Query: 133 --TDGGSSR--------VVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
D + R V ++ + G Y E SAK + E F AL+
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ + ++F + Y T+ ++V ++++D K V L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 67
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 122
Query: 133 --TDGGSSR--------VVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
D + R V ++ + G Y E SAK + E F AL+
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ + ++F + Y T+ ++V ++++D K V L +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 68
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 123
Query: 133 --TDGGSSRVVPQKK--------ALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
D + R + + K + G Y E SAK + E F AL+
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ + ++F + Y T+ ++V ++++D K V L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 120
Query: 133 --TDGGSSRVVPQKK--------ALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
D + R + + K + G Y E SAK + E F AL+
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ + ++F + Y T+ ++V ++++D K V L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 67
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 122
Query: 133 --TDGGSSR--------VVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
D + R V ++ + G Y E SAK + E F AL+
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ + ++F + Y T+ ++V ++++D K V L +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 69
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 124
Query: 133 --TDGGSSR--------VVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
D + R V ++ + G Y E SAK + E F AL+
Sbjct: 125 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ + ++F + Y T+ ++V ++++D K V L +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 66
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 121
Query: 133 --TDGGSSR--------VVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
D + R V ++ + G Y E SAK + E F AL+
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E P +L+G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 132 D 132
D
Sbjct: 118 D 118
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E ++ P P +L+G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCPNT----PIILVGTKL 117
Query: 132 D 132
D
Sbjct: 118 D 118
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 7/120 (5%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ + ++F + Y T+ +++ ++++D K V L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQED 85
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFXPN----VPIILVGNKKD 140
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E P +L+G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 132 D 132
D
Sbjct: 118 D 118
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E ++ P P +L+G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCPNT----PIILVGTKL 117
Query: 132 D 132
D
Sbjct: 118 D 118
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + ++E+++ W E + P +L+G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-----PSTPIILVGTKL 117
Query: 132 D 132
D
Sbjct: 118 D 118
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E ++ P P +L+G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCPNT----PIILVGTKL 117
Query: 132 D 132
D
Sbjct: 118 D 118
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E ++ P P +L+G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCPNT----PIILVGTKL 117
Query: 132 D 132
D
Sbjct: 118 D 118
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 89
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E P +L+G K+
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 144
Query: 132 D 132
D
Sbjct: 145 D 145
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 63
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E P +L+G K+
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PHTPILLVGTKL 118
Query: 132 D 132
D
Sbjct: 119 D 119
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 81
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E ++ P P +L+G K+
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCPNT----PIILVGTKL 136
Query: 132 D 132
D
Sbjct: 137 D 137
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E P +L+G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PHTPILLVGTKL 117
Query: 132 D 132
D
Sbjct: 118 D 118
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 68
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + ++E+++ W E + P +L+G K+
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-----PSTPIILVGTKL 123
Query: 132 D 132
D
Sbjct: 124 D 124
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 63
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E P +L+G K+
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PHTPILLVGTKL 118
Query: 132 D 132
D
Sbjct: 119 D 119
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
KV++LG VGKTSL +Q+V +FS+ Y T+ + +K + + L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID- 132
+ L +F G VLVY V +F+ +++ + K + P VL+GNK D
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESL---YQKLHEGHGKTRVPVVLVGNKADL 141
Query: 133 -TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166
+ V +K A W A + E+SA+E+
Sbjct: 142 SPEREVQAVEGKKLAESWGA-----TFMESSAREN 171
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 69
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + ++E+++ W E + P +L+G K+
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-----PSTPIILVGTKL 124
Query: 132 D 132
D
Sbjct: 125 D 125
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ ++F + Y T+ ++V ++++D K V L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 120
Query: 133 --TDGGSSR--------VVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
D + R V ++ + G Y E SAK + E F AL+
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ ++F + Y T+ ++V ++++D K V L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 63
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 118
Query: 133 --TDGGSSR--------VVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
D + R V ++ + G Y E SAK + E F AL+
Sbjct: 119 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 7/120 (5%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ + ++F + Y T+ +++ ++++D K V L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQED 85
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 140
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ ++F + Y T+ ++V ++++D K V L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 120
Query: 133 --TDGGSSR--------VVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
D + R V ++ + G Y E SAK + E F AL+
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ ++F + Y T+ ++V ++++D K V L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 120
Query: 133 --TDGGSSRVVPQKK--------ALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
D + R + + K + G Y E SAK + E F AL+
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ ++F + Y T+ ++V ++++D K V L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 63
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 118
Query: 133 --TDGGSSR--------VVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIAL 181
D + R V ++ + G Y E SAK + E F AL
Sbjct: 119 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 119
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 120 DLRDDPSTI 128
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 118 DLRDDPSTI 126
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 118 DLRDDPSTI 126
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 63
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 118
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 119 DLRDDPSTI 127
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 120
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 121 DLRDDPSTI 129
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 120
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 121 DLRDDPSTI 129
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 118 DLRDDPSTI 126
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 124
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 125 DLRDDPSTI 133
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 72
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 127
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 128 DLRDDPSTI 136
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 118 DLRDDPSTI 126
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 118 DLRDDPSTI 126
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 118 DLRDDPSTI 126
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 118 DLRDDPSTI 126
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ + ++F Y T+ ++V ++++D K V L +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 120
Query: 133 --TDGGSSRVV------PQKKA--LEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
D ++R + P K A + G Y E SAK + E F AL+
Sbjct: 121 LRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 118 DLRDDPSTI 126
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 118 DLRDDPSTI 126
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 66
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 121
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 122 DLRDDPSTI 130
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 119
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 120 DLRDDPSTI 128
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGK L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 69
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E P +L+G K+
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 124
Query: 132 D 132
D
Sbjct: 125 D 125
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 17/145 (11%)
Query: 1 MDISVNMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKL 60
MD + N+K K++V+GDS GKT+L++ + + F + Y T+ ++ T ++D +
Sbjct: 16 MDPNQNVK----CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQR 70
Query: 61 VTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFES-LQNWREEFLKQADPGEH 119
+ L +WDT+G + ++ Y +D ++ +D++ +T +S L+ W+ E
Sbjct: 71 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI--------Q 122
Query: 120 EACP---FVLLGNKIDTDGGSSRVV 141
E CP +L+G K D S +V
Sbjct: 123 EFCPNTKMLLVGCKSDLRTDVSTLV 147
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E ++ P P +L+G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCPNT----PIILVGTKL 117
Query: 132 D 132
D
Sbjct: 118 D 118
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E ++ P P +L+G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCPNT----PIILVGTKL 117
Query: 132 D 132
D
Sbjct: 118 D 118
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 17/145 (11%)
Query: 1 MDISVNMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKL 60
MD + N+K K++V+GDS GKT+L++ + + F + Y T+ ++ T ++D +
Sbjct: 21 MDPNQNVK----CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQR 75
Query: 61 VTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFES-LQNWREEFLKQADPGEH 119
+ L +WDT+G + ++ Y +D ++ +D++ +T +S L+ W+ E
Sbjct: 76 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI--------Q 127
Query: 120 EACP---FVLLGNKIDTDGGSSRVV 141
E CP +L+G K D S +V
Sbjct: 128 EFCPNTKMLLVGCKSDLRTDVSTLV 152
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 89
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E P +L+G K+
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 144
Query: 132 D 132
D
Sbjct: 145 D 145
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 65
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E P +L+G K+
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 120
Query: 132 D 132
D
Sbjct: 121 D 121
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 7/120 (5%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++V+GD GKT L+ + ++F + Y T+ ++V ++++D K V L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 85
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + V+ + E++ + W E +K P P +L+ NK D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPE-VKHFCPN----VPIILVANKKD 140
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 7/160 (4%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K+ +LG VGK+SL Q+V +F Y TI F TK + ++ + LQ+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
+ + + +LVY V K+FE ++ + L + P +L+GNK D
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 118
Query: 134 DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
RV+ ++ + A N + E+SAKE+ + F
Sbjct: 119 H--MERVISYEEG-KALAESWNAAFLESSAKENQTAVDVF 155
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 7/120 (5%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ ++F + Y T+ +++ ++++D K V L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQED 65
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 120
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 11/169 (6%)
Query: 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIW 66
M + K+ +LG VGK+SL Q+V +F Y TI F TK + ++ + LQ+
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLV 59
Query: 67 DTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVL 126
DTAGQ+ + + + +LVY V K+FE ++ + L + P +L
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIML 116
Query: 127 LGNKIDTDGGSSRVVP--QKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
+GNK D RV+ + KAL A N + E+SAKE+ + F
Sbjct: 117 VGNKKDLH--MERVISYEEGKAL---AESWNAAFLESSAKENQTAVDVF 160
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 89
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + + +FE+++ W E P +L+G K+
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 144
Query: 132 D 132
D
Sbjct: 145 D 145
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 9/164 (5%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L +V++LGD GVGKTSL + + K + +G D + L +D + TL + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFA-GKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 72 ERFQSLGS--AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGN 129
E+ S + +G V+VY + + +FES R + L++ +H P +L+GN
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQ-LRRTHQADH--VPIILVGN 119
Query: 130 KIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
K D V + +A CA + + ETSA N+ E F
Sbjct: 120 KADLARCREVSVEEGRA---CAVVFDCKFIETSATLQHNVAELF 160
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 7/160 (4%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K+ +LG VGK+SL Q+V +F Y TI F TK + ++ + LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
+ + + +LVY V K+FE ++ + L + P +L+GNK D
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 123
Query: 134 DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
RV+ ++ + A N + E+SAKE+ + F
Sbjct: 124 H--MERVISYEEG-KALAESWNAAFLESSAKENQTAVDVF 160
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 15/171 (8%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +++GD VGKTSL+ Y N + +Y T +F + + +D + V LQ+ DTAGQ+
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQD 79
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNK-- 130
F L Y D +L + V +F QN E+++ + +A P +L+G +
Sbjct: 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSF---QNVSEKWVPEIRCHCPKA-PIILVGTQSD 135
Query: 131 --------IDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
I+ D + VP++ A Y E SA N+ E F
Sbjct: 136 LREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTA 69
+ L+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTA
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTA 211
Query: 70 GQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLG 128
G E + L Y D ++ + + +F ++ W E ++ P P +L+G
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPE-VRHHCPN----TPIILVG 266
Query: 129 NKID 132
K+D
Sbjct: 267 TKLD 270
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTA 69
+ L+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTA
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTA 211
Query: 70 GQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLG 128
G E + L Y D ++ + + +F ++ W E ++ P P +L+G
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPE-VRHHCPN----TPIILVG 266
Query: 129 NKID 132
K+D
Sbjct: 267 TKLD 270
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTA 69
+ L+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTA
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTA 211
Query: 70 GQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLG 128
G E + L Y D ++ + + +F ++ W E ++ P P +L+G
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPE-VRHHCPN----TPIILVG 266
Query: 129 NKID 132
K+D
Sbjct: 267 TKLD 270
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 70/132 (53%), Gaps = 13/132 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++V+GDS GKT+L++ + + F + Y T+ ++ T ++D + + L +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 67
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFES-LQNWREEFLKQADPGEHEACP---FVLLGN 129
+ ++ Y +D ++ +D++ +T +S L+ W+ E E CP +L+G
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI--------QEFCPNTKMLLVGC 119
Query: 130 KIDTDGGSSRVV 141
K D S +V
Sbjct: 120 KSDLRTDVSTLV 131
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLRDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 118 DLRDDPSTI 126
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 19/177 (10%)
Query: 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQI 65
+M + +K+ + G +GVGK++L+ +++ +F +Y T+ + + + +DD++V+++I
Sbjct: 22 SMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEI 80
Query: 66 WDTAGQE-RFQSLGSAFYRGADCCVLVYDVNVQKTFES---LQNWREEFLKQADPGEHEA 121
DTAGQE Q G R + VLVYD+ + +FE L+N +E K +
Sbjct: 81 LDTAGQEDTIQREGH--MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN------ 132
Query: 122 CPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSA-KEDCNIDEAF--LC 175
+L+GNK D D SR V ++ E A ++E SA + NI E F LC
Sbjct: 133 VTLILVGNKADLD--HSRQVSTEEG-EKLATELACAFYECSACTGEGNITEIFYELC 186
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
+LK +V+GD VGKT L+ Y + F ++Y T+ D + + K L ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNK 130
E + L Y D ++ + V +F+++ + W E LK+ P PF+L+G +
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE-LKEYAPN----VPFLLIGTQ 131
Query: 131 ID 132
ID
Sbjct: 132 ID 133
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 17/180 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT L+ ++F + Y T+ ++V ++++D K V L +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGLED 68
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L Y D ++ + ++ + E++ + W E +K P P +L+GNK D
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 123
Query: 133 --TDGGSSR--------VVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182
D + R V ++ + G Y E SAK + E F AL+
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 20/187 (10%)
Query: 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQI 65
N RR K++++GD GKT L+ +F + Y T+ ++V ++++D + V L +
Sbjct: 7 NSIRR---KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVA-DVEVDGRRVELAL 62
Query: 66 WDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPF 124
WDTAGQE + L Y ++ ++ + +++ + E++Q W E L + P
Sbjct: 63 WDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC-----QGVPI 117
Query: 125 VLLGNKIDTDGGSSRV----------VPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFL 174
+L+G K+D + V ++ G Y+E SAK + E F
Sbjct: 118 ILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFE 177
Query: 175 CVAEIAL 181
+L
Sbjct: 178 AATRASL 184
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y + ++ + + + TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 118 DLRDDPSTI 126
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGK L+ Y NKF +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 124
Query: 132 D 132
D
Sbjct: 125 D 125
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 118 DLRDDPSTI 126
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NK +Y T+ ++ + + + TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 118 DLRDDPSTI 126
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y NKF +Y T+ ++ + + + TL ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 66
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131
+ L Y D ++ + V +FE++ + W E PF+L+G +I
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 121
Query: 132 DTDGGSSRV 140
D S +
Sbjct: 122 DLRDDPSTI 130
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 7/160 (4%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K+ +LG VGK+SL Q+V +F TI F TK + ++ + LQ+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
+ + + +LVY V K+FE ++ + L + P +L+GNK D
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 121
Query: 134 DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
RV+ ++ + A N + E+SAKE+ + F
Sbjct: 122 H--MERVISYEEG-KALAESWNAAFLESSAKENQTAVDVF 158
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 26/140 (18%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+K +V+GD VGKT L+ Y N F +Y T+ ++ + + +D K V L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 64
Query: 73 RFQSLGSAFY--------------RG-----ADCCVLVYDVNVQKTFESLQ-NWREEFLK 112
+ L Y RG AD ++ + + +FE+++ W E
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 113 QADPGEHEACPFVLLGNKID 132
P +L+G K+D
Sbjct: 125 HC-----PNTPIILVGTKLD 139
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 13/123 (10%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT+++ + + + Y T+ ++ T L+ +++ V L +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 71
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFES-LQNWREEFLKQADPGEHEACP---FVLLGN 129
+ ++ Y +D +L +D++ +T +S L+ WR E L + CP +L+G
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL--------DYCPSTRVLLIGC 123
Query: 130 KID 132
K D
Sbjct: 124 KTD 126
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 13/123 (10%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT+++ + + + Y T+ ++ T L+ +++ V L +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFES-LQNWREEFLKQADPGEHEACP---FVLLGN 129
+ ++ Y +D +L +D++ +T +S L+ WR E L + CP +L+G
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL--------DYCPSTRVLLIGC 122
Query: 130 KID 132
K D
Sbjct: 123 KTD 125
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 9/159 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++ ++G GKT+ +N +F++ T+G F +++ + VT+++WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 78
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF+S+ + RG V + D Q+ E+ +N E D + + P ++LGNK D
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKN---ELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 133 TDGG-SSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170
G + + +K L R I + S KE NID
Sbjct: 136 LPGALDEKELIEKMNLSAIQDR-EICCYSISCKEKDNID 173
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 13/123 (10%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++++GD GKT+++ + + + Y T+ ++ T L+ +++ V L +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFES-LQNWREEFLKQADPGEHEACP---FVLLGN 129
+ ++ Y +D +L +D++ +T +S L+ WR E L + CP +L+G
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL--------DYCPSTRVLLIGC 139
Query: 130 KID 132
K D
Sbjct: 140 KTD 142
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 9/159 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++ ++G GKT+ +N +F++ T+G F +++ + VT+++WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 87
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF+S+ + RG V + D Q+ E+ +N E D + + P ++LGNK D
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKN---ELHNLLDKPQLQGIPVLVLGNKRD 144
Query: 133 TDGG-SSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170
G + + +K L R I + S KE NID
Sbjct: 145 LPGALDEKELIEKMNLSAIQDR-EICCYSISCKEKDNID 182
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 7/120 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++ ++G GKT+ +N +FS+ T+G F +++ + VT++IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGN--VTIKIWDIGGQP 78
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
RF+S+ + RG + V + D ++ E+ +N E D + + P ++LGNK D
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRN---ELHNLLDKPQLQGIPVLVLGNKRD 135
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 12/174 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
LKV ++G+ GK++L+++Y+ + Q+ ++ G F KE+ +D + L I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQE-ESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
Q F D V V+ + + +F+++ N+ FL+ P VL+G +
Sbjct: 79 ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNY---FLRLCSFRNASEVPMVLVGTQDA 130
Query: 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE--IALKNE 184
+ RV+ +A + Y+ET A N++ F VA+ +AL+ +
Sbjct: 131 ISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKK 184
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 19/155 (12%)
Query: 25 KTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84
K+SL+ ++V F Y TI D + + D + TLQI DT G +F ++
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTI-EDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID-----TDGGSSR 139
+LV+ V +++ E L + ++ G E P +L+GNK D D ++
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIK--GSVEDIPVMLVGNKCDETQREVDTREAQ 137
Query: 140 VVPQKKALEW-CAYRGNIPYFETSAKEDCNIDEAF 173
V Q EW CA + ETSAK + N+ E F
Sbjct: 138 AVAQ----EWKCA------FMETSAKMNYNVKELF 162
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQ--QYKATIGADFVTKELQMDDKL---VTLQI 65
N K+ ++G++G GKT+L+ Q K S AT+G D +Q+ DK + L +
Sbjct: 1 NRXKLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNV 60
Query: 66 WDTAGQERFQSLGSAFYRGADCCVLVYDVNV-QKTFESLQNWREEFLKQADPGEHEACPF 124
WD AG+E F S F + VYD++ Q ++ + W +A + P
Sbjct: 61 WDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARA-----SSSPV 115
Query: 125 VLLGNKIDTDGGSSR 139
+L+G +D R
Sbjct: 116 ILVGTHLDVSDEKQR 130
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 22/173 (12%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKF-------SQQYKATIGADFVTKELQMDDKLVTLQI 65
L++ VLGD+ GK+SL+++++ + S+QYK KE+ +D + + I
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK---------KEMLVDGQTHLVLI 58
Query: 66 WDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFV 125
+ AG + + F AD + V+ + + +F+++ + G
Sbjct: 59 REEAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRG-GLALA 112
Query: 126 LLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
L+G + S RVV +A CA Y+ET A N+D F VA+
Sbjct: 113 LVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQ 165
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQ--QYKATIGADFVTKELQMDDKL---VTLQIWDT 68
K+ ++G++G GKT+L+ Q K S AT+G D +Q+ DK + L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 69 AGQERFQSLGSAFYRGADCCVLVYDVNV-QKTFESLQNWREEFLKQADPGEHEACPFVLL 127
AG+E F S F + VYD++ Q ++ + W +A + P +L+
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARA-----SSSPVILV 116
Query: 128 GNKIDTDGGSSR 139
G +D R
Sbjct: 117 GTHLDVSDEKQR 128
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 9/183 (4%)
Query: 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQI 65
+M ++ KV++LG GVGK++L ++ +A + + +D + +L +
Sbjct: 1 SMSDESVYKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMV 58
Query: 66 WDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFV 125
+D Q+ + L D V+VY V + +FE R + L++A + + P +
Sbjct: 59 YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ-LRRAR--QTDDVPII 115
Query: 126 LLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFL-CVAEIALKNE 184
L+GNK D V + +A CA + + ETSA N+ F V +I L+ +
Sbjct: 116 LVGNKSDLVRSREVSVDEGRA---CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRD 172
Query: 185 HKD 187
K+
Sbjct: 173 SKE 175
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 14/182 (7%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQY-KATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
L+V++ G GKT+++NQ + S ++ AT+G + T E V ++D G
Sbjct: 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFE----KGRVAFTVFDMGGA 73
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQAD-----PGEHEACPFVL 126
++F+ L +Y D + V D + +++ + LK D PG PF+
Sbjct: 74 KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGR-VPFLF 132
Query: 127 LGNKIDTDGGSSRVVPQKKALEWCAYRGNIPY--FETSAKEDCNIDEAFLCVAEIALKNE 184
NK+D G+ + L+ G+ P+ F ++ + + E F + E A +
Sbjct: 133 FANKMDA-AGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191
Query: 185 HK 186
K
Sbjct: 192 GK 193
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 22/173 (12%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKF-------SQQYKATIGADFVTKELQMDDKLVTLQI 65
L++ VLGD+ GK+SL+++++ + S+QYK KE+ +D + + I
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK---------KEMLVDGQTHLVLI 58
Query: 66 WDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFV 125
+ AG + + F AD + V+ + + +F+++ + G
Sbjct: 59 REEAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRG-GLALA 112
Query: 126 LLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
L+G + S RVV +A A Y+ET A N+D F VA+
Sbjct: 113 LVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQ 165
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70
++ KV++LG GVGK++L ++ +A + + +D + +L ++D
Sbjct: 6 SVYKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWE 63
Query: 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130
Q+ + L D V+VY V + +FE R + L++A + + P +L+GNK
Sbjct: 64 QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ-LRRAR--QTDDVPIILVGNK 120
Query: 131 IDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFL-CVAEIALKNEHK 186
D V + +A CA + + ETSA N+ F V +I L+ + K
Sbjct: 121 SDLVRSREVSVDEGRA---CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 174
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKE------LQMDDKL--VTLQ 64
+KV ++GD GKTSL+ Q + F + T G + VTK+ L+ DD+L
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 65 IWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPF 124
WD GQE + F + +L+ D +T + W K P
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGG-----KSPV 153
Query: 125 VLLGNKIDTDGGSSRVVPQKK 145
+++ NKID + S + QKK
Sbjct: 154 IVVMNKIDEN--PSYNIEQKK 172
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70
++ KV++LG GVGK++L ++ +A + + +D + +L ++D
Sbjct: 1 SVYKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWE 58
Query: 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130
Q+ + L D V+VY V + +FE R + L++A + + P +L+GNK
Sbjct: 59 QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ-LRRAR--QTDDVPIILVGNK 115
Query: 131 IDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
D V + +A CA + + ETSA N+ F
Sbjct: 116 SDLVRSREVSVDEGRA---CAVVFDCKFIETSAALHHNVQALF 155
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 7/164 (4%)
Query: 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70
+ KV++LG+SGVGK++L + + ++ D + + +D + VTL ++D
Sbjct: 11 GVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 70
Query: 71 QERFQS-LGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGN 129
Q L + D ++V+ V +++F + E L+ H P +L+GN
Sbjct: 71 QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVP---ETLLRLRAGRPHHDLPVILVGN 127
Query: 130 KIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
K +D SR V ++ + + ETSA N E F
Sbjct: 128 K--SDLARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELF 168
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 18/179 (10%)
Query: 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTL---QIW- 66
+ KV+++G+SGVGK++L + + ++ D + + +D + VTL IW
Sbjct: 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWE 81
Query: 67 --DTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPF 124
D G R L + D ++V+ V +++F + E L+ H P
Sbjct: 82 QGDAGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVP---ETLLRLRAGRPHHDLPV 133
Query: 125 VLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFL-CVAEIALK 182
+L+GNK +D SR V ++ + + ETSA N E F V +I L+
Sbjct: 134 ILVGNK--SDLARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQIRLR 189
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 7/164 (4%)
Query: 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70
+ KV+++G+SGVGK++L + + ++ D + + +D + VTL ++D
Sbjct: 1 GVFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60
Query: 71 QERFQS-LGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGN 129
Q L + D ++V+ V +++F + E L+ H P +L+GN
Sbjct: 61 QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVP---ETLLRLRAGRPHHDLPVILVGN 117
Query: 130 KIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173
K +D SR V ++ + + ETSA N E F
Sbjct: 118 K--SDLARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELF 158
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 70/189 (37%), Gaps = 50/189 (26%)
Query: 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD--------- 57
MK R+ + V VLG GKT+L++ + + + I E+ MD
Sbjct: 1 MKIRSPI-VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDF 59
Query: 58 -------DKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVN------VQKTFESLQ 104
+ L L DT G E F +L AD +L+ D+N Q+ L+
Sbjct: 60 LKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILR 119
Query: 105 NWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK 164
+R PFV+ NKID G W + G P+ ET +K
Sbjct: 120 MYR--------------TPFVVAANKIDRIHG------------WRVHEGR-PFMETFSK 152
Query: 165 EDCNIDEAF 173
+D + +
Sbjct: 153 QDIQVQQKL 161
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
++++++G GKTS++ + + TIG + T E K ++ +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQD 72
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+ + L +Y+ + V D N + + + REE +K + E ++ NK D
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDR---DRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
KVI++G GKT+++ Q++ N+ TIG++ +E+ + + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIGSN--VEEIVVKN--THFLMWDIGGQES 72
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
+S + +Y + +LV D ++ + E L +EE + + ++ NK D
Sbjct: 73 LRSSWNTYYSNTEFIILVVD-SIDR--ERLAITKEELYRMLAHEDLRKAAVLIFANKQDM 129
Query: 134 DG 135
G
Sbjct: 130 KG 131
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 70/182 (38%), Gaps = 51/182 (28%)
Query: 15 VIVLGDSGVGKTSLMNQY----VYNKFSQQYKATIGA-------------DFVTKELQMD 57
V VLG GKT+L++ V ++ + IGA DF+ K+ +
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICGDFL-KKFSIR 66
Query: 58 DKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVN------VQKTFESLQNWREEFL 111
+ L L DT G E F +L AD +L+ D+N Q+ L+ +R
Sbjct: 67 ETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYR---- 122
Query: 112 KQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDE 171
PFV+ NKID G W + G P+ ET +K+D + +
Sbjct: 123 ----------TPFVVAANKIDRIHG------------WRVHEGR-PFXETFSKQDIQVQQ 159
Query: 172 AF 173
Sbjct: 160 KL 161
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ- 71
+ + +LG G GK++L +++ +F +Y + D + E +D + V L++ DTA
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNL-EDTYSSEETVDHQPVHLRVMDTADLD 80
Query: 72 -----ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVL 126
ER+ + AF ++VY V+ +++F+S ++ E A + + P +L
Sbjct: 81 TPRNCERYLNWAHAF-------LVVYSVDSRQSFDSSSSYLELLALHAKETQ-RSIPALL 132
Query: 127 LGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSA 163
LGNK+D R V + + + G + +FE SA
Sbjct: 133 LGNKLDM--AQYRQVTKAEGVALAGRFGCL-FFEVSA 166
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 12/148 (8%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
++++++G G GKT+++ + + TIG + T + K ++ +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVETVQY----KNISFTVWDVGGQD 55
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R +SL +YR + + V D N + RE + + E +++ NK D
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEA---REVMQRMLNEDELRNAAWLVFANKQD 112
Query: 133 -TDGGSSRVVPQKKALEWCAYRGNIPYF 159
+ S+ + +K L R P+F
Sbjct: 113 LPEAMSAAEITEKLGLHSIRNR---PWF 137
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 20/158 (12%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
++++++G GKT+++ + + TIG + T E + ++ +WD GQ+
Sbjct: 18 VRILMVGLDAAGKTTILYKVKLGEVVTTI-PTIGFNVETVEFRN----ISFTVWDVGGQD 72
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+ + L +Y D + V D N + E + + REE + + E + ++ NK D
Sbjct: 73 KIRPLWRHYYSNTDGLIFVVDSNDR---ERIDDAREELHRMINEEELKDAIILVFANKQD 129
Query: 133 T-DGGSSRVVPQKKAL------EW-----CAYRGNIPY 158
+ S+ V +K L W CA RG+ Y
Sbjct: 130 LPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLY 167
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
KVI++G GKT+++ Q+ N+ TIG++ +E+ +++ +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINN--TRFLMWDIGGQES 72
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+S + +Y + ++V D + E + REE K + ++ NK D
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 128
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
KVI++G GKT+++ Q+ N+ TIG++ +E+ +++ +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINN--TRFLMWDIGGQES 72
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+S + +Y + ++V D + E + REE K + ++ NK D
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 128
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
KVI++G GKT+++ Q+ N+ TIG++ +E+ +++ +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINN--TRFLMWDIGGQES 77
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+S + +Y + ++V D + E + REE K + ++ NK D
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 133
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
KVI++G GKT+++ Q+ N+ TIG++ +E+ +++ +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINN--TRFLMWDIGGQES 78
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+S + +Y + ++V D + E + REE K + ++ NK D
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 134
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 12/148 (8%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
++++++G G GKT+++ + + TIG + T + K ++ +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVETVQY----KNISFTVWDVGGQD 72
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R +SL +YR + + V D N + RE + + E +++ NK D
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEA---REVMQRMLNEDELRNAAWLVFANKQD 129
Query: 133 T-DGGSSRVVPQKKALEWCAYRGNIPYF 159
+ S+ + +K L R P+F
Sbjct: 130 LPEAMSAAEITEKLGLHSIRNR---PWF 154
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 12/148 (8%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
++++++G G GKT+++ + + TIG + T + K ++ +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVETVQY----KNISFTVWDVGGQD 72
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R +SL +YR + + V D N + RE + + E +++ NK D
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEA---REVMQRMLNEDELRNAVWLVFANKQD 129
Query: 133 T-DGGSSRVVPQKKALEWCAYRGNIPYF 159
+ S+ + +K L R P+F
Sbjct: 130 LPEAMSAAEITEKLGLHSIRNR---PWF 154
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 23/131 (17%)
Query: 15 VIVLGDSGVGKTSLMNQYVYNKFS--QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
++V G VGK+S MN V S Y T D V K +++ + + + DT G +
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTT-TDPVYKSMEL-HPIGPVTLVDTPGLD 94
Query: 73 RFQSLG--------SAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPF 124
LG FYR ADC +LV D + + N +E PF
Sbjct: 95 DVGELGRLRVEKARRVFYR-ADCGILVTDSAPTPYEDDVVNLFKEM----------EIPF 143
Query: 125 VLLGNKIDTDG 135
V++ NKID G
Sbjct: 144 VVVVNKIDVLG 154
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQY-VYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
+ V+ LG GKT+++N+ N SQ TIG F ++ + ++ ++D +GQ
Sbjct: 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQ 77
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
R+++L +Y+ + V D + + + + L D +H P + NK+
Sbjct: 78 GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDI-KHRRIPILFFANKM 136
Query: 132 DT-DGGSSRVVPQKKALE 148
D D +S V Q LE
Sbjct: 137 DLRDAVTSVKVSQLLCLE 154
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
++++++G GKT+++ + + TIG + T E K ++ +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQD 55
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+ + L +++ + V D N + E + REE ++ E ++ NK D
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 112
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
++++++G GKT+++ + + TIG + T E K ++ +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQD 220
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+ + L +++ + V D N + E + REE ++ E ++ NK D
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 277
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
++++++G GKT+++ + + TIG + T E K ++ +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQD 72
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+ + L +++ + V D N + E + REE ++ E ++ NK D
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 129
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
++++++G GKT+++ + + TIG + T E K ++ +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQD 71
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+ + L +++ + V D N + E + REE ++ E ++ NK D
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 128
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++++LG GKT+L+ Q S T F K +Q + L +WD GQ
Sbjct: 18 VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQ--SQGFKLNVWDIGGQR 72
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFE 101
+ + +++ D + V D +K FE
Sbjct: 73 KIRPYWRSYFENTDILIYVIDSADRKRFE 101
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++++LG GKT+L+ Q S T F K +Q L +WD GQ
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 71
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFE 101
+ + +++ D + V D +K FE
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADRKRFE 100
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++++LG GKT+L+ Q S T F K +Q + L +WD GQ
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQ--SQGFKLNVWDIGGQR 59
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFE 101
+ + +++ D + V D +K FE
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 15 VIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERF 74
V ++G GKT+L++ ++K ++Q I ++ ++DK +T DT G E F
Sbjct: 11 VTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITF--LDTPGHEAF 68
Query: 75 QSLGSAFYRGADCCVLVY---DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
++ + + D +LV D + +T E++ + K A+ P ++ NK+
Sbjct: 69 TTMRARGAQVTDIVILVVAADDGVMPQTVEAINHA-----KAAN------VPIIVAINKM 117
Query: 132 D-TDGGSSRV---------VPQKKALEWCAYRGNIPYFETSAKEDCNID---EAFLCVAE 178
D + RV VP+ EW G+ + + SAK +D E L V+E
Sbjct: 118 DKPEANPDRVMQELMEYNLVPE----EWG---GDTIFCKLSAKTKEGLDHLLEMILLVSE 170
Query: 179 I 179
+
Sbjct: 171 M 171
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 34/179 (18%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++++LG G GKT+++ + + TIG + T + K + Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNVET----VTYKNLKFQVWDLGGQT 57
Query: 73 RFQSLGSAFYRGADCCVLVYD------VNVQKTFESLQNWREEFLKQADPGEHEACPFVL 126
+ +Y D + V D + + K+ E + + E V+
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS---------ELVAMLEEEELRKAILVV 108
Query: 127 LGNKID-------TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
NK D ++ ++ +P K +W F+TSA + +DEA + E
Sbjct: 109 FANKQDMEQAMTPSEMANALGLPALKDRKW-------QIFKTSATKGTGLDEAMEWLVE 160
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
++++++G GKT+++ + + TIG + T E K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNICFTVWDVGGQD 72
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
R + L +++ + V D N + E +Q +E K E +L NK D
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDR---ERIQEVADELQKMLLVDELRDAVLLLFANKQD 129
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 34/179 (18%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++++LG G GKT+++ + + TIG + T + K + Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNVET----VTYKNLKFQVWDLGGLT 59
Query: 73 RFQSLGSAFYRGADCCVLVYD------VNVQKTFESLQNWREEFLKQADPGEHEACPFVL 126
+ +Y D + V D + + K+ E + + E V+
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS---------ELVAMLEEEELRKAILVV 110
Query: 127 LGNKID-------TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178
NK D ++ +S +P K +W F+TSA + +DEA + E
Sbjct: 111 FANKQDMEQAMTSSEMANSLGLPALKDRKW-------QIFKTSATKGTGLDEAMEWLVE 162
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++++LG GKT+++ + K Q F + + K V +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 55
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+ + L +Y G + V D + + + R+E + + E ++ NK D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 112
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++++LG GKT+++ + K Q F + + K V +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 55
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+ + L +Y G + V D + + + R+E + + E ++ NK D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 112
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++++LG GKT+++ + K Q F + + K V +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 67
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+ + L +Y G + V D + + + R+E + + E ++ NK D
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 124
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++++LG GKT+L+ Q S T F K +Q + L +WD G
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQ--SQGFKLNVWDIGGLR 59
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFE 101
+ + +++ D + V D +K FE
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++++LG GKT+++ + K Q F + + K V +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 68
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+ + L +Y G + V D + + + R+E + + E ++ NK D
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 125
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++++LG GKT+++ + K Q F + + K V +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 377
Query: 73 RFQSLGSAFYRGADCCVLVYD 93
+ + L +Y G + V D
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVD 398
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 11/133 (8%)
Query: 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGA--DFVTKELQMDDKLVTLQ 64
M N K++++G SG GK+S M +++ +S +GA D L+ + TL
Sbjct: 1 MSSNNRKKLLLMGRSGSGKSS-MRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNM-TLN 58
Query: 65 IWDTAGQERFQ-----SLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEH 119
+WD GQ+ F ++ + V+DV + + ++ + + LKQ
Sbjct: 59 LWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKA-LKQLRKYSP 117
Query: 120 EACPFVLLGNKID 132
+A FVLL +K+D
Sbjct: 118 DAKIFVLL-HKMD 129
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
++++++G GKT+++ + + TIG + T E K ++ +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQD 75
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQ-KTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
+ + L +++ + V D N + + E+ R+E + + E ++ NK
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA----RDELHRMLNEDELRDAVLLVFANKQ 131
Query: 132 D 132
D
Sbjct: 132 D 132
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
++++++G G GKT+++ + K + F + +Q + ++ +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVECVQYCN--ISFTVWDVGGQD 72
Query: 73 RFQSLGSAFYRGADCCVLVYDVN 95
R +SL +Y + + V D N
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSN 95
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 9/143 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
L++++LG GKT+++ KF+ + TI ++ + L IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILK-----KFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 73
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+S ++ D + V D ++ + Q + L + ++ NK D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQD 130
Query: 133 TDGGSSRVVPQKKALEWCAYRGN 155
G S Q +ALE + R +
Sbjct: 131 LPGALSXNAIQ-EALELDSIRSH 152
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
++++++G GKT+++ + + TIG + T E K + +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNICFTVWDVGGQD 84
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+ + L +++ + V D N + E +Q +E K E ++ NK D
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDR---ERVQESADELQKMLQEDELRDAVLLVFANKQD 141
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 36/183 (19%)
Query: 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATI----GADFVTKELQMDDKLVTLQI 65
R LKV ++G VGK+SL+N + SQ +A + G E Q+ + +Q+
Sbjct: 222 RTGLKVAIVGRPNVGKSSLLNAW-----SQSDRAIVTDLPGTTRDVVESQLVVGGIPVQV 276
Query: 66 WDTAG----QERFQSLGSAFYR-GADCCVLVYDVNVQKTFESLQNWR---EEFLKQADPG 117
DTAG ++ + +G R A+ LV T ++ W +E +Q
Sbjct: 277 LDTAGIRETSDQVEKIGVERSRQAANTADLVL-----LTIDAATGWTTGDQEIYEQV--- 328
Query: 118 EHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIP-YFETSAKEDCNIDEAFLCV 176
+H P +L+ NKID + +K+ + Y NI T+A + ID +
Sbjct: 329 KHR--PLILVMNKID--------LVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAI 378
Query: 177 AEI 179
EI
Sbjct: 379 LEI 381
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
+++ LG GKT+++ + K Q F + + K V +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQDK 56
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+ L +Y G + V D + + + R+E + + E ++ NK D
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREXRDAIILIFANKQD 112
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
L++++LG GKT+++ KF+ + TI ++ + L IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILK-----KFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 71
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+S ++ D + V D ++ + Q + L + ++ NK D
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQD 128
Query: 133 TDGGSS 138
G S
Sbjct: 129 LPGALS 134
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
L++++LG GKT+++ KF+ + TI ++ + L IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILK-----KFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 73
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+S ++ D + V D ++ + Q + L + ++ NK D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQD 130
Query: 133 TDGGSS 138
G S
Sbjct: 131 LPGALS 136
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
L++++LG G GKT+++ + + K TIG + T + K + L +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVET----LSYKNLKLNVWDLGGQT 73
Query: 73 RFQSLGSAFYRGADCCVLVYD 93
+ +Y + V D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVD 94
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADF--VTKELQMDDKLVTLQIWDTAGQ 71
K++ LG GKT+L++ ++ AT+ + ++EL + + + +D G
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGN--IKFTTFDLGGH 55
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
+ + L ++ + V + D + F+ R E + E + PFV+LGNKI
Sbjct: 56 IQARRLWKDYFPEVNGIVFLVDAADPERFDEA---RVELDALFNIAELKDVPFVILGNKI 112
Query: 132 DTDGGSS 138
D S
Sbjct: 113 DAPNAVS 119
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
K++ LG GKT+L++ ++ AT+ + ++ + +D G +
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 79
Query: 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133
+ L ++ + V + D + F+ R E + E + PFV+LGNKID
Sbjct: 80 ARRLWKDYFPEVNGIVFLVDAADPERFDEA---RVELDALFNIAELKDVPFVILGNKIDA 136
Query: 134 DGGSS 138
S
Sbjct: 137 PNAVS 141
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++++LG GKT+++ + K Q F + + K V +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGLD 58
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+ + L +Y G + V D + + + R+E + + E ++ NK D
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 115
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++++LG GKT+++ + K Q F + + K V +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGLD 57
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+ + L +Y G + V D + + + R+E + + E ++ NK D
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 114
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Query: 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72
+++++LG GKT+++ + K Q F + + K V +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGLD 68
Query: 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132
+ + L +Y G + V D + + + R+E + + E ++ NK D
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 125
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 8/127 (6%)
Query: 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71
+L++++LG GKT+++ KF+ + TI ++ + L IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILK-----KFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGL 55
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131
+ +S ++ D + V D ++ + Q + L + ++ NK
Sbjct: 56 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQ 112
Query: 132 DTDGGSS 138
D G S
Sbjct: 113 DLPGALS 119
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 12/92 (13%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDD--KLVTLQIWDTAGQ 71
K+I+ G+ GVGKT+L+ + V + K IG F T+E++ + K +I T G+
Sbjct: 2 KIIITGEPGVGKTTLVKKIV----ERLGKRAIG--FWTEEVRDPETKKRTGFRIITTEGK 55
Query: 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESL 103
++ S S F+ + V Y VNVQ FE L
Sbjct: 56 KKIFS--SKFF-TSKKLVGSYGVNVQ-YFEEL 83
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 14/96 (14%)
Query: 1 MDISVNMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATI---GADFVTKELQMD 57
+D +N++ + ++++G +GVGKT+ + + + +F QQ K+ + G F ++
Sbjct: 282 VDEPLNVEGKAPFVILMVGVNGVGKTTTIGK-LARQFEQQGKSVMLAAGDTFRAAAVEQ- 339
Query: 58 DKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYD 93
LQ+W GQ R A + GAD +++D
Sbjct: 340 -----LQVW---GQ-RNNIPVIAQHTGADSASVIFD 366
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73
++++LG G GKT+++ + + TIG + T + K + Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNVET----VTYKNLKFQVWDLGGLTS 63
Query: 74 FQSLGSAFYRGADCCVLVYD 93
+ +Y D + V D
Sbjct: 64 IRPYWRCYYSNTDAVIYVVD 83
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 15 VIVLGDSGVGKTSLMNQYVYNKFSQQY---KATIGADFVTKELQMDDKLVTL 63
V V G SG GK++L+N+ +Y +Q+ KA G + L+ DK++ +
Sbjct: 653 VAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDI 704
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 15 VIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERF 74
VI+ G +G GKT+ + Q++ + F Q +A VT+ ++ V ++ G+E
Sbjct: 79 VIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138
Query: 75 QSLG 78
+S G
Sbjct: 139 KSCG 142
>pdb|3IDX|H Chain H, Crystal Structure Of Hiv-Gp120 Core In Complex With
Cd4-Binding Site Antibody B13, Space Group C222
pdb|3IDY|H Chain H, Crystal Structure Of Hiv-Gp120 Core In Complex With
Cd4-Binding Site Antibody B13, Space Group C2221
pdb|3IDY|B Chain B, Crystal Structure Of Hiv-Gp120 Core In Complex With
Cd4-Binding Site Antibody B13, Space Group C2221
Length = 231
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 31/91 (34%), Gaps = 29/91 (31%)
Query: 145 KALEWCA---YRGNIPYFETSAKEDCNIDE--------------------AFLCVAEIAL 181
K LEW A Y G Y+ S K +I + C +I L
Sbjct: 43 KGLEWVALIKYDGRNKYYADSVKGRFSISRDNSKNTLYLEMNSLRAEDTAVYYCARDIGL 102
Query: 182 KNEHKDIY------YQPQGISETVSEVEQRG 206
K EH DI Y QG TVS +G
Sbjct: 103 KGEHYDILTAYGPDYWGQGALVTVSSASTKG 133
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 28.1 bits (61), Expect = 3.4, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 15 VIVLGDSGVGKTSLMNQYVYNKFSQQY---KATIGADFVTKELQMDDKLVTL 63
V V G SG GK++L+N+ +Y +Q+ KA G + L+ DK++ +
Sbjct: 351 VAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDI 402
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 28.1 bits (61), Expect = 3.5, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 15 VIVLGDSGVGKTSLMNQYVYNKFSQQY---KATIGADFVTKELQMDDKLVTL 63
V V G SG GK++L+N+ +Y +Q+ KA G + L+ DK++ +
Sbjct: 653 VAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDI 704
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 8 KRRNLLKVIVLGDSGVGKTSLMNQYV 33
K N + V+VLG GVGK+S +N +
Sbjct: 32 KDMNSMTVLVLGKGGVGKSSTVNSLI 57
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 8 KRRNLLKVIVLGDSGVGKTSLMNQYV 33
K N + V+VLG GVGK+S +N +
Sbjct: 32 KDMNSMTVLVLGKGGVGKSSTVNSLI 57
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 9/133 (6%)
Query: 23 VGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFY 82
GKT+++ KF+ + TI ++ + L IWD GQ+ +S ++
Sbjct: 29 AGKTTILK-----KFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYF 83
Query: 83 RGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVP 142
D + V D ++ + Q + L + ++ NK D G S
Sbjct: 84 ESTDGLIWVVDSADRQRXQDCQRELQSLLVEE---RLAGATLLIFANKQDLPGALSXNAI 140
Query: 143 QKKALEWCAYRGN 155
Q +ALE + R +
Sbjct: 141 Q-EALELDSIRSH 152
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 8 KRRNLLKVIVLGDSGVGKTSLMNQYV 33
K N + V+VLG GVGK+S +N +
Sbjct: 32 KDMNSMTVLVLGKGGVGKSSTVNSLI 57
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 8 KRRNLLKVIVLGDSGVGKTSLMNQYV 33
K N + V+VLG GVGK+S +N +
Sbjct: 31 KDMNSMTVLVLGKGGVGKSSTVNSLI 56
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 13/125 (10%)
Query: 14 KVIVLGDS----GVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTA 69
KV++ G + G K NQ+ + + + K G T +Q + + DT
Sbjct: 32 KVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQR-GISITTSVMQFPYHDCLVNLLDTP 90
Query: 70 GQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGN 129
G E F DCC++V D K E E + D P + N
Sbjct: 91 GHEDFSEDTYRTLTAVDCCLMVID--AAKGVEDRTRKLMEVTRLRD------TPILTFMN 142
Query: 130 KIDTD 134
K+D D
Sbjct: 143 KLDRD 147
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 13/125 (10%)
Query: 14 KVIVLGDS----GVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTA 69
KV++ G + G K NQ+ + + + K G T +Q + + DT
Sbjct: 32 KVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQR-GISITTSVMQFPYHDCLVNLLDTP 90
Query: 70 GQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGN 129
G E F DCC++V D K E E + D P + N
Sbjct: 91 GHEDFSEDTYRTLTAVDCCLMVID--AAKGVEDRTRKLMEVTRLRD------TPILTFMN 142
Query: 130 KIDTD 134
K+D D
Sbjct: 143 KLDRD 147
>pdb|3NYZ|A Chain A, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
pdb|3NYZ|B Chain B, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
pdb|3NZ1|A Chain A, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
Complexed With Transition State Analog 5-Nitro
Benzotriazole
Length = 261
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 15/81 (18%)
Query: 34 YNKFSQQYKATIGADFVTKELQMDDKLVTLQ-----------IWDTAGQERFQSLGSAFY 82
Y+KF ++Y +G T+E + TL+ +WD +E + A+
Sbjct: 69 YSKFMERY--AVGLAIATEEKYFNGSYETLRKIASSVSIPILMWDFIVKE--SQIDDAYN 124
Query: 83 RGADCCVLVYDVNVQKTFESL 103
GAD L+ + ++ ESL
Sbjct: 125 LGADTVALIVKILTERELESL 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,193,955
Number of Sequences: 62578
Number of extensions: 249944
Number of successful extensions: 1442
Number of sequences better than 100.0: 367
Number of HSP's better than 100.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 369
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)