Query 028305
Match_columns 210
No_of_seqs 154 out of 1721
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 09:26:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 4.6E-44 9.9E-49 242.7 20.4 179 6-191 3-182 (205)
2 KOG0394 Ras-related GTPase [Ge 100.0 1.5E-43 3.2E-48 237.1 18.2 203 8-210 5-210 (210)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 1.6E-41 3.5E-46 229.4 19.0 194 10-210 3-200 (200)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 8.8E-41 1.9E-45 226.0 18.9 169 11-185 21-189 (221)
5 KOG0078 GTP-binding protein SE 100.0 1.9E-40 4.2E-45 228.3 20.4 175 8-189 8-182 (207)
6 KOG0080 GTPase Rab18, small G 100.0 1.5E-39 3.3E-44 213.1 18.0 175 7-187 6-180 (209)
7 KOG0098 GTPase Rab2, small G p 100.0 1.8E-39 3.8E-44 218.0 17.5 175 8-189 2-176 (216)
8 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 8.2E-39 1.8E-43 229.8 21.9 195 13-210 1-201 (201)
9 cd04121 Rab40 Rab40 subfamily. 100.0 9.7E-38 2.1E-42 220.9 22.3 176 10-193 4-179 (189)
10 KOG0087 GTPase Rab11/YPT3, sma 100.0 5.7E-38 1.2E-42 215.1 17.9 174 7-187 9-182 (222)
11 KOG0079 GTP-binding protein H- 100.0 9.5E-39 2.1E-43 206.6 13.0 191 10-210 6-198 (198)
12 cd04120 Rab12 Rab12 subfamily. 100.0 4.1E-37 8.8E-42 219.6 22.3 167 13-185 1-167 (202)
13 cd04112 Rab26 Rab26 subfamily. 100.0 8.8E-37 1.9E-41 217.6 21.1 190 13-210 1-191 (191)
14 cd04125 RabA_like RabA-like su 100.0 1.8E-36 3.9E-41 215.6 22.0 187 13-210 1-187 (188)
15 cd04110 Rab35 Rab35 subfamily. 100.0 3E-36 6.4E-41 216.0 22.7 192 10-210 4-199 (199)
16 KOG0086 GTPase Rab4, small G p 100.0 2.4E-37 5.2E-42 201.3 14.1 180 6-192 3-182 (214)
17 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 3.3E-36 7.1E-41 212.1 21.1 168 9-182 2-181 (182)
18 PLN03110 Rab GTPase; Provision 100.0 6.9E-36 1.5E-40 216.4 23.1 174 5-185 5-178 (216)
19 cd04133 Rop_like Rop subfamily 100.0 6.3E-36 1.4E-40 209.5 20.8 163 13-181 2-173 (176)
20 KOG0095 GTPase Rab30, small G 100.0 1.4E-36 3E-41 197.0 14.6 170 9-185 4-173 (213)
21 KOG0093 GTPase Rab3, small G p 100.0 1.9E-36 4.1E-41 195.7 15.1 169 10-185 19-187 (193)
22 cd04118 Rab24 Rab24 subfamily. 100.0 3.2E-35 6.8E-40 210.1 22.8 190 13-210 1-193 (193)
23 cd04131 Rnd Rnd subfamily. Th 100.0 1.8E-35 3.9E-40 208.0 21.0 164 12-181 1-176 (178)
24 cd04144 Ras2 Ras2 subfamily. 100.0 8.2E-36 1.8E-40 212.4 19.4 188 14-210 1-188 (190)
25 KOG0091 GTPase Rab39, small G 100.0 1.2E-36 2.7E-41 200.0 13.5 174 10-188 6-180 (213)
26 cd04122 Rab14 Rab14 subfamily. 100.0 2.7E-35 5.8E-40 205.6 20.8 164 12-182 2-165 (166)
27 cd04126 Rab20 Rab20 subfamily. 100.0 1.5E-35 3.4E-40 213.7 20.1 188 13-210 1-220 (220)
28 cd01875 RhoG RhoG subfamily. 100.0 3.6E-35 7.7E-40 209.1 21.4 166 11-182 2-178 (191)
29 cd04109 Rab28 Rab28 subfamily. 100.0 4.3E-35 9.4E-40 212.4 21.6 167 13-183 1-168 (215)
30 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.1E-34 2.3E-39 210.4 22.4 171 9-185 10-192 (232)
31 cd01867 Rab8_Rab10_Rab13_like 100.0 8.8E-35 1.9E-39 203.2 20.8 165 11-182 2-166 (167)
32 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 8.6E-35 1.9E-39 203.9 20.6 167 12-185 2-168 (172)
33 cd01874 Cdc42 Cdc42 subfamily. 100.0 6.5E-35 1.4E-39 205.0 20.1 163 12-180 1-174 (175)
34 cd04132 Rho4_like Rho4-like su 100.0 7.5E-35 1.6E-39 207.1 20.6 182 13-210 1-186 (187)
35 cd04111 Rab39 Rab39 subfamily. 100.0 1.6E-34 3.5E-39 208.4 22.2 171 12-188 2-173 (211)
36 PLN03108 Rab family protein; P 100.0 2.1E-34 4.6E-39 207.9 22.6 170 9-185 3-172 (210)
37 PTZ00369 Ras-like protein; Pro 100.0 9.4E-35 2E-39 206.8 20.2 171 10-187 3-173 (189)
38 cd04116 Rab9 Rab9 subfamily. 100.0 2.4E-34 5.2E-39 201.6 21.0 168 9-179 2-169 (170)
39 cd04117 Rab15 Rab15 subfamily. 100.0 2E-34 4.3E-39 200.1 20.2 160 13-179 1-160 (161)
40 PLN03071 GTP-binding nuclear p 100.0 2.7E-34 5.8E-39 208.3 21.5 167 9-185 10-176 (219)
41 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.6E-34 7.8E-39 199.9 20.8 164 12-182 2-165 (166)
42 cd01865 Rab3 Rab3 subfamily. 100.0 5.9E-34 1.3E-38 198.6 21.3 162 13-181 2-163 (165)
43 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 5.5E-34 1.2E-38 199.4 21.0 165 14-182 2-166 (170)
44 cd04128 Spg1 Spg1p. Spg1p (se 100.0 3.8E-34 8.3E-39 202.0 20.3 167 13-185 1-170 (182)
45 cd04127 Rab27A Rab27a subfamil 100.0 4.2E-34 9.1E-39 202.1 20.5 167 11-183 3-179 (180)
46 cd01864 Rab19 Rab19 subfamily. 100.0 4.4E-34 9.6E-39 199.3 20.2 163 11-179 2-164 (165)
47 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 7.2E-34 1.6E-38 205.1 21.8 167 13-185 2-180 (222)
48 cd04119 RJL RJL (RabJ-Like) su 100.0 7E-34 1.5E-38 198.7 19.9 166 13-181 1-167 (168)
49 PF00071 Ras: Ras family; Int 100.0 5.4E-34 1.2E-38 198.2 19.2 161 14-181 1-161 (162)
50 cd01868 Rab11_like Rab11-like. 100.0 8.5E-34 1.8E-38 197.8 20.2 163 11-180 2-164 (165)
51 cd01871 Rac1_like Rac1-like su 100.0 1E-33 2.2E-38 198.7 20.0 161 13-179 2-173 (174)
52 cd04136 Rap_like Rap-like subf 100.0 1E-33 2.2E-38 197.0 19.3 161 13-180 2-162 (163)
53 cd04134 Rho3 Rho3 subfamily. 100.0 1.8E-33 3.8E-38 200.2 20.9 166 14-185 2-178 (189)
54 cd00877 Ran Ran (Ras-related n 100.0 2.3E-33 5E-38 195.6 21.0 161 13-183 1-161 (166)
55 cd01866 Rab2 Rab2 subfamily. 100.0 3.1E-33 6.7E-38 195.5 21.2 166 10-182 2-167 (168)
56 KOG0097 GTPase Rab14, small G 100.0 6E-34 1.3E-38 183.4 15.6 196 8-210 7-215 (215)
57 cd04124 RabL2 RabL2 subfamily. 100.0 3.7E-33 7.9E-38 193.8 20.9 160 13-183 1-160 (161)
58 cd04175 Rap1 Rap1 subgroup. T 100.0 2.3E-33 5.1E-38 195.4 19.6 163 12-181 1-163 (164)
59 cd04106 Rab23_lke Rab23-like s 100.0 2.5E-33 5.4E-38 194.9 19.2 159 13-179 1-161 (162)
60 cd01862 Rab7 Rab7 subfamily. 100.0 6.8E-33 1.5E-37 194.5 21.1 170 13-184 1-170 (172)
61 cd04113 Rab4 Rab4 subfamily. 100.0 3.6E-33 7.9E-38 193.9 19.4 160 13-179 1-160 (161)
62 smart00175 RAB Rab subfamily o 100.0 1E-32 2.2E-37 192.1 20.4 163 13-182 1-163 (164)
63 smart00176 RAN Ran (Ras-relate 100.0 1.1E-32 2.4E-37 196.5 20.4 156 18-183 1-156 (200)
64 smart00173 RAS Ras subfamily o 100.0 9.1E-33 2E-37 192.5 19.5 162 13-181 1-162 (164)
65 cd04103 Centaurin_gamma Centau 100.0 7E-33 1.5E-37 191.4 18.7 157 13-179 1-157 (158)
66 cd04142 RRP22 RRP22 subfamily. 100.0 9.2E-33 2E-37 197.2 19.9 171 13-186 1-179 (198)
67 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.4E-32 3.1E-37 190.9 20.0 161 12-180 1-161 (162)
68 cd04176 Rap2 Rap2 subgroup. T 100.0 1.1E-32 2.3E-37 191.9 19.3 162 12-180 1-162 (163)
69 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.9E-32 4.1E-37 191.9 20.5 163 12-180 2-168 (170)
70 PLN03118 Rab family protein; P 100.0 4.3E-32 9.4E-37 196.3 22.8 169 9-184 11-180 (211)
71 cd01861 Rab6 Rab6 subfamily. 100.0 1.7E-32 3.8E-37 190.5 19.5 160 13-179 1-160 (161)
72 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3E-32 6.5E-37 189.8 20.2 162 12-180 2-163 (164)
73 cd04140 ARHI_like ARHI subfami 100.0 3.3E-32 7.1E-37 189.8 20.0 162 13-179 2-163 (165)
74 cd04130 Wrch_1 Wrch-1 subfamil 100.0 4.3E-32 9.4E-37 190.6 20.2 161 13-179 1-172 (173)
75 cd01892 Miro2 Miro2 subfamily. 100.0 2.2E-32 4.7E-37 191.2 18.2 165 10-182 2-167 (169)
76 smart00174 RHO Rho (Ras homolo 100.0 4.1E-32 8.8E-37 191.0 19.6 162 15-182 1-173 (174)
77 cd04143 Rhes_like Rhes_like su 100.0 4.1E-32 8.9E-37 199.5 20.1 167 13-182 1-172 (247)
78 KOG0088 GTPase Rab21, small G 100.0 3.1E-33 6.7E-38 183.1 12.4 170 9-185 10-179 (218)
79 cd01873 RhoBTB RhoBTB subfamil 100.0 5.5E-32 1.2E-36 192.6 19.7 160 12-179 2-194 (195)
80 cd01860 Rab5_related Rab5-rela 100.0 9.2E-32 2E-36 187.2 20.3 162 12-180 1-162 (163)
81 cd04101 RabL4 RabL4 (Rab-like4 100.0 8.5E-32 1.8E-36 187.6 19.5 160 13-180 1-163 (164)
82 cd04177 RSR1 RSR1 subgroup. R 100.0 1.8E-31 4E-36 186.6 20.3 164 12-181 1-164 (168)
83 KOG0081 GTPase Rab27, small G 100.0 6.3E-34 1.4E-38 186.5 6.9 175 9-189 6-189 (219)
84 KOG0083 GTPase Rab26/Rab37, sm 100.0 8E-34 1.7E-38 180.9 6.9 162 17-185 2-164 (192)
85 cd04123 Rab21 Rab21 subfamily. 100.0 2.3E-31 5E-36 184.9 20.0 161 13-180 1-161 (162)
86 cd04135 Tc10 TC10 subfamily. 100.0 2.6E-31 5.6E-36 186.9 20.3 163 13-181 1-174 (174)
87 cd01863 Rab18 Rab18 subfamily. 100.0 2.7E-31 5.9E-36 184.5 19.8 160 13-179 1-160 (161)
88 cd04148 RGK RGK subfamily. Th 100.0 5.2E-31 1.1E-35 191.4 20.1 165 13-185 1-167 (221)
89 cd04114 Rab30 Rab30 subfamily. 100.0 1.2E-30 2.5E-35 182.7 21.2 164 10-180 5-168 (169)
90 cd04129 Rho2 Rho2 subfamily. 100.0 1.1E-30 2.4E-35 185.6 21.0 167 13-185 2-177 (187)
91 cd01870 RhoA_like RhoA-like su 100.0 7.9E-31 1.7E-35 184.5 19.8 162 13-180 2-174 (175)
92 cd04146 RERG_RasL11_like RERG/ 100.0 2.9E-31 6.3E-36 185.0 17.1 162 14-181 1-164 (165)
93 cd04147 Ras_dva Ras-dva subfam 100.0 6.2E-31 1.3E-35 188.4 18.6 188 14-208 1-188 (198)
94 cd00154 Rab Rab family. Rab G 100.0 1.8E-30 4E-35 179.5 19.0 159 13-178 1-159 (159)
95 cd04139 RalA_RalB RalA/RalB su 100.0 4.4E-30 9.5E-35 178.8 19.7 163 13-182 1-163 (164)
96 KOG0395 Ras-related GTPase [Ge 100.0 7E-30 1.5E-34 180.8 18.1 168 11-185 2-169 (196)
97 KOG0393 Ras-related small GTPa 100.0 9.1E-31 2E-35 181.3 13.2 170 10-185 2-183 (198)
98 cd04137 RheB Rheb (Ras Homolog 100.0 2E-29 4.3E-34 178.2 19.8 166 13-185 2-167 (180)
99 PTZ00132 GTP-binding nuclear p 100.0 3.1E-29 6.7E-34 181.9 21.1 169 7-185 4-172 (215)
100 cd00876 Ras Ras family. The R 100.0 1.1E-29 2.4E-34 176.0 17.9 159 14-179 1-159 (160)
101 smart00177 ARF ARF-like small 100.0 2.5E-30 5.5E-35 181.8 14.7 159 10-180 11-173 (175)
102 cd00157 Rho Rho (Ras homology) 100.0 2E-29 4.3E-34 176.7 19.2 160 13-178 1-170 (171)
103 cd04149 Arf6 Arf6 subfamily. 100.0 1.7E-30 3.6E-35 181.5 13.3 157 10-178 7-167 (168)
104 cd01893 Miro1 Miro1 subfamily. 100.0 1.4E-29 3E-34 176.7 17.7 163 13-182 1-165 (166)
105 cd04158 ARD1 ARD1 subfamily. 100.0 7.9E-30 1.7E-34 178.4 16.4 160 14-185 1-165 (169)
106 PLN00223 ADP-ribosylation fact 100.0 5.4E-30 1.2E-34 180.8 15.0 162 10-183 15-180 (181)
107 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.5E-29 3.3E-34 179.0 17.3 166 12-185 3-174 (183)
108 cd04150 Arf1_5_like Arf1-Arf5- 100.0 5.4E-30 1.2E-34 177.4 13.5 154 13-178 1-158 (159)
109 PTZ00133 ADP-ribosylation fact 100.0 1.5E-29 3.2E-34 178.8 14.9 162 10-183 15-180 (182)
110 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 5.7E-30 1.2E-34 178.2 11.8 155 14-178 1-163 (164)
111 cd04154 Arl2 Arl2 subfamily. 100.0 4.9E-29 1.1E-33 175.1 14.1 158 9-178 11-172 (173)
112 cd04102 RabL3 RabL3 (Rab-like3 100.0 3.6E-28 7.9E-33 173.2 18.2 166 13-179 1-198 (202)
113 cd04157 Arl6 Arl6 subfamily. 100.0 7.2E-29 1.6E-33 172.4 13.6 156 14-178 1-161 (162)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2.8E-28 6E-33 171.3 13.9 156 11-178 14-173 (174)
115 cd04156 ARLTS1 ARLTS1 subfamil 100.0 3.7E-28 8.1E-33 168.5 13.1 154 14-178 1-159 (160)
116 cd04161 Arl2l1_Arl13_like Arl2 100.0 4E-28 8.7E-33 169.4 12.8 157 14-178 1-166 (167)
117 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.1E-27 2.3E-32 165.9 14.6 153 14-178 1-157 (158)
118 cd04151 Arl1 Arl1 subfamily. 100.0 7.4E-28 1.6E-32 166.7 13.2 153 14-178 1-157 (158)
119 cd04160 Arfrp1 Arfrp1 subfamil 100.0 8.4E-28 1.8E-32 167.9 13.4 154 14-178 1-166 (167)
120 cd00879 Sar1 Sar1 subfamily. 100.0 2.8E-27 6.1E-32 168.6 15.2 158 10-179 17-189 (190)
121 PF00025 Arf: ADP-ribosylation 100.0 2.9E-27 6.2E-32 166.0 14.0 160 9-180 11-175 (175)
122 PLN00023 GTP-binding protein; 100.0 2E-26 4.3E-31 171.9 19.2 150 8-157 17-191 (334)
123 smart00178 SAR Sar1p-like memb 100.0 5.5E-27 1.2E-31 166.1 14.9 158 10-179 15-183 (184)
124 KOG4252 GTP-binding protein [S 100.0 4.3E-29 9.3E-34 167.0 3.4 169 9-185 17-185 (246)
125 cd04159 Arl10_like Arl10-like 99.9 9.7E-27 2.1E-31 160.9 13.7 154 14-178 1-158 (159)
126 PTZ00099 rab6; Provisional 99.9 9E-26 1.9E-30 158.2 17.9 143 35-184 3-145 (176)
127 cd01897 NOG NOG1 is a nucleola 99.9 3.7E-26 8.1E-31 159.7 16.0 156 14-181 2-168 (168)
128 cd04171 SelB SelB subfamily. 99.9 3.6E-26 7.8E-31 159.0 15.0 155 13-178 1-163 (164)
129 cd01890 LepA LepA subfamily. 99.9 4.7E-26 1E-30 160.8 15.7 155 14-180 2-176 (179)
130 KOG0073 GTP-binding ADP-ribosy 99.9 5.6E-26 1.2E-30 149.9 14.7 166 9-183 13-180 (185)
131 cd01898 Obg Obg subfamily. Th 99.9 4.6E-26 9.9E-31 159.5 15.3 160 14-179 2-169 (170)
132 PRK12299 obgE GTPase CgtA; Rev 99.9 1.6E-25 3.6E-30 170.6 18.0 168 11-184 157-331 (335)
133 cd04155 Arl3 Arl3 subfamily. 99.9 3.8E-26 8.3E-31 160.4 13.1 159 8-178 10-172 (173)
134 TIGR00231 small_GTP small GTP- 99.9 4.2E-25 9.2E-30 152.5 17.7 158 12-177 1-160 (161)
135 TIGR02528 EutP ethanolamine ut 99.9 7.3E-26 1.6E-30 154.0 12.0 135 14-177 2-141 (142)
136 cd01878 HflX HflX subfamily. 99.9 2.1E-25 4.6E-30 160.6 14.9 158 9-180 38-204 (204)
137 TIGR00436 era GTP-binding prot 99.9 8.4E-25 1.8E-29 163.5 15.8 167 14-197 2-177 (270)
138 COG1100 GTPase SAR1 and relate 99.9 5.3E-24 1.2E-28 155.0 18.4 170 12-185 5-189 (219)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2E-24 4.4E-29 150.8 15.3 159 14-181 2-166 (168)
140 PF02421 FeoB_N: Ferrous iron 99.9 3.6E-25 7.8E-30 149.9 10.9 148 13-176 1-156 (156)
141 cd01879 FeoB Ferrous iron tran 99.9 2.8E-24 6E-29 148.6 15.0 148 17-180 1-156 (158)
142 TIGR02729 Obg_CgtA Obg family 99.9 4.8E-24 1E-28 162.5 16.5 163 11-180 156-328 (329)
143 PRK15494 era GTPase Era; Provi 99.9 5.7E-24 1.2E-28 163.2 16.9 170 9-197 49-229 (339)
144 cd01889 SelB_euk SelB subfamil 99.9 2.3E-24 5E-29 153.7 13.6 161 13-181 1-186 (192)
145 PRK03003 GTP-binding protein D 99.9 4.8E-24 1E-28 170.7 16.6 166 10-185 209-386 (472)
146 cd00882 Ras_like_GTPase Ras-li 99.9 1.4E-23 3E-28 143.7 16.4 154 17-177 1-156 (157)
147 cd01891 TypA_BipA TypA (tyrosi 99.9 3.1E-24 6.8E-29 153.3 13.4 162 13-183 3-190 (194)
148 TIGR03156 GTP_HflX GTP-binding 99.9 7E-24 1.5E-28 162.9 16.1 155 10-179 187-350 (351)
149 PRK04213 GTP-binding protein; 99.9 2.7E-24 5.8E-29 154.6 11.6 156 10-184 7-195 (201)
150 KOG0075 GTP-binding ADP-ribosy 99.9 7.8E-25 1.7E-29 142.0 7.8 164 11-181 19-182 (186)
151 cd00881 GTP_translation_factor 99.9 9.9E-24 2.1E-28 150.0 14.0 157 14-180 1-186 (189)
152 KOG0070 GTP-binding ADP-ribosy 99.9 1E-23 2.2E-28 142.8 12.7 167 8-183 13-180 (181)
153 TIGR00450 mnmE_trmE_thdF tRNA 99.9 4.9E-23 1.1E-27 162.5 17.5 154 10-184 201-363 (442)
154 TIGR03594 GTPase_EngA ribosome 99.9 3.9E-23 8.5E-28 164.4 17.0 165 10-184 170-347 (429)
155 cd04164 trmE TrmE (MnmE, ThdF, 99.9 8.6E-23 1.9E-27 140.9 15.6 146 13-180 2-156 (157)
156 PRK12297 obgE GTPase CgtA; Rev 99.9 1.6E-22 3.5E-27 157.9 18.6 164 12-185 158-331 (424)
157 PF08477 Miro: Miro-like prote 99.9 2.6E-23 5.7E-28 137.1 12.1 114 14-132 1-119 (119)
158 TIGR00475 selB selenocysteine- 99.9 1.1E-22 2.3E-27 165.7 17.5 160 13-185 1-170 (581)
159 PRK12298 obgE GTPase CgtA; Rev 99.9 1.4E-22 3.1E-27 157.4 17.3 167 12-184 159-336 (390)
160 cd01895 EngA2 EngA2 subfamily. 99.9 1.1E-22 2.3E-27 142.7 15.2 157 12-179 2-173 (174)
161 cd01881 Obg_like The Obg-like 99.9 3.7E-23 8E-28 145.5 12.6 159 17-179 1-175 (176)
162 PRK11058 GTPase HflX; Provisio 99.9 1.3E-22 2.8E-27 159.3 16.7 161 12-185 197-366 (426)
163 PRK05291 trmE tRNA modificatio 99.9 8.2E-23 1.8E-27 162.1 15.2 149 11-182 214-371 (449)
164 TIGR00487 IF-2 translation ini 99.9 4E-22 8.7E-27 161.8 19.3 156 10-179 85-248 (587)
165 PRK03003 GTP-binding protein D 99.9 1.4E-22 3E-27 162.3 16.4 155 11-182 37-200 (472)
166 TIGR03598 GTPase_YsxC ribosome 99.9 7.5E-23 1.6E-27 144.4 13.1 154 6-170 12-179 (179)
167 PRK00089 era GTPase Era; Revie 99.9 2.4E-22 5.2E-27 152.2 16.5 172 11-197 4-184 (292)
168 TIGR01393 lepA GTP-binding pro 99.9 1.8E-22 3.8E-27 164.6 16.7 159 11-181 2-180 (595)
169 PRK12296 obgE GTPase CgtA; Rev 99.9 2.3E-22 5E-27 158.9 16.7 170 10-185 157-344 (500)
170 cd01894 EngA1 EngA1 subfamily. 99.9 1.3E-22 2.9E-27 140.0 13.3 147 16-179 1-156 (157)
171 PRK00454 engB GTP-binding prot 99.9 3.1E-22 6.6E-27 143.3 14.8 163 6-180 18-193 (196)
172 PF00009 GTP_EFTU: Elongation 99.9 5.2E-23 1.1E-27 146.2 10.6 162 11-181 2-187 (188)
173 cd01888 eIF2_gamma eIF2-gamma 99.9 1.9E-22 4E-27 144.9 13.0 163 13-181 1-199 (203)
174 PRK00093 GTP-binding protein D 99.9 7E-22 1.5E-26 157.5 17.5 165 10-184 171-347 (435)
175 cd04163 Era Era subfamily. Er 99.9 8.1E-22 1.8E-26 137.2 15.0 156 12-179 3-167 (168)
176 COG1159 Era GTPase [General fu 99.9 5.5E-22 1.2E-26 144.5 14.2 173 9-197 3-185 (298)
177 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 1.6E-22 3.6E-27 136.8 10.5 167 9-185 7-173 (216)
178 PRK15467 ethanolamine utilizat 99.9 2.7E-22 5.9E-27 138.4 11.5 143 14-184 3-150 (158)
179 PRK09518 bifunctional cytidyla 99.9 6.6E-22 1.4E-26 165.2 15.8 165 11-185 449-625 (712)
180 PRK05306 infB translation init 99.9 1.8E-21 3.8E-26 161.7 17.4 161 9-180 287-451 (787)
181 CHL00189 infB translation init 99.9 1.2E-21 2.6E-26 161.3 15.9 162 10-180 242-409 (742)
182 PRK00093 GTP-binding protein D 99.9 3.7E-21 8E-26 153.3 15.6 148 13-179 2-160 (435)
183 KOG1673 Ras GTPases [General f 99.9 4.9E-21 1.1E-25 125.6 13.1 174 7-186 15-191 (205)
184 KOG0071 GTP-binding ADP-ribosy 99.9 3E-21 6.6E-26 124.4 11.8 159 10-180 15-177 (180)
185 cd00880 Era_like Era (E. coli 99.9 4.2E-21 9.1E-26 132.6 13.4 154 17-179 1-162 (163)
186 TIGR00491 aIF-2 translation in 99.9 5.9E-21 1.3E-25 154.8 16.1 161 11-182 3-217 (590)
187 cd04105 SR_beta Signal recogni 99.9 8.2E-21 1.8E-25 136.2 15.1 121 14-136 2-124 (203)
188 PRK12317 elongation factor 1-a 99.9 4.4E-21 9.6E-26 152.1 14.8 161 7-174 1-198 (425)
189 KOG3883 Ras family small GTPas 99.9 2.2E-20 4.7E-25 122.2 15.3 169 10-185 7-179 (198)
190 PRK05433 GTP-binding protein L 99.9 5.7E-21 1.2E-25 155.9 15.6 161 10-182 5-185 (600)
191 TIGR00437 feoB ferrous iron tr 99.9 7.5E-21 1.6E-25 155.2 15.8 146 19-180 1-154 (591)
192 PRK09554 feoB ferrous iron tra 99.9 2.1E-20 4.5E-25 156.0 18.5 153 12-180 3-167 (772)
193 KOG4423 GTP-binding protein-li 99.9 1.8E-23 3.9E-28 141.0 -0.0 180 9-189 22-202 (229)
194 TIGR03594 GTPase_EngA ribosome 99.9 9.8E-21 2.1E-25 150.8 15.4 152 14-182 1-161 (429)
195 TIGR00483 EF-1_alpha translati 99.9 1.1E-20 2.5E-25 149.8 14.5 158 9-173 4-199 (426)
196 cd01876 YihA_EngB The YihA (En 99.9 1.9E-20 4E-25 130.6 13.7 153 14-179 1-169 (170)
197 COG1160 Predicted GTPases [Gen 99.9 4.1E-20 9E-25 141.9 16.3 165 11-185 177-355 (444)
198 KOG0076 GTP-binding ADP-ribosy 99.9 1.9E-21 4.1E-26 129.9 7.6 167 6-183 11-189 (197)
199 PRK09518 bifunctional cytidyla 99.8 7.6E-20 1.6E-24 152.9 18.0 156 10-182 273-437 (712)
200 COG0486 ThdF Predicted GTPase 99.8 4.6E-20 9.9E-25 142.0 15.0 155 10-183 215-378 (454)
201 cd01896 DRG The developmentall 99.8 1.1E-19 2.4E-24 132.8 16.0 155 14-180 2-225 (233)
202 COG1160 Predicted GTPases [Gen 99.8 2.7E-20 5.9E-25 142.8 12.9 150 13-181 4-165 (444)
203 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.2E-19 2.5E-24 129.1 14.8 149 12-170 2-172 (195)
204 PRK10512 selenocysteinyl-tRNA- 99.8 1.2E-19 2.7E-24 148.4 16.8 160 14-182 2-167 (614)
205 TIGR03680 eif2g_arch translati 99.8 2.9E-20 6.3E-25 146.2 12.6 167 9-181 1-196 (406)
206 PRK10218 GTP-binding protein; 99.8 1.4E-19 3E-24 147.3 16.8 162 11-181 4-195 (607)
207 cd04166 CysN_ATPS CysN_ATPS su 99.8 5.7E-20 1.2E-24 132.5 12.6 150 14-172 1-185 (208)
208 PRK04000 translation initiatio 99.8 6.1E-20 1.3E-24 144.4 13.2 168 7-181 4-201 (411)
209 PF10662 PduV-EutP: Ethanolami 99.8 7.3E-20 1.6E-24 121.3 10.9 136 14-177 3-142 (143)
210 PRK04004 translation initiatio 99.8 2.4E-19 5.2E-24 146.0 16.1 161 10-181 4-218 (586)
211 KOG1423 Ras-like GTPase ERA [C 99.8 2E-19 4.2E-24 131.0 13.6 171 8-186 68-276 (379)
212 TIGR01394 TypA_BipA GTP-bindin 99.8 1.1E-19 2.3E-24 148.1 13.6 161 13-182 2-192 (594)
213 cd04168 TetM_like Tet(M)-like 99.8 2.4E-19 5.2E-24 131.2 14.0 114 14-135 1-130 (237)
214 cd01883 EF1_alpha Eukaryotic e 99.8 8.9E-20 1.9E-24 132.5 11.1 148 14-170 1-194 (219)
215 COG2229 Predicted GTPase [Gene 99.8 1.8E-18 3.9E-23 117.2 15.8 160 6-179 4-176 (187)
216 COG0218 Predicted GTPase [Gene 99.8 1E-18 2.3E-23 120.9 14.3 164 6-182 18-198 (200)
217 PRK12735 elongation factor Tu; 99.8 6.6E-19 1.4E-23 138.2 15.1 166 5-180 5-202 (396)
218 KOG0074 GTP-binding ADP-ribosy 99.8 1.4E-19 3.1E-24 116.9 9.2 165 7-178 12-176 (185)
219 PRK12736 elongation factor Tu; 99.8 1.1E-18 2.4E-23 136.8 15.9 165 7-181 7-201 (394)
220 TIGR00485 EF-Tu translation el 99.8 1.6E-18 3.5E-23 136.1 15.9 165 8-182 8-198 (394)
221 KOG1489 Predicted GTP-binding 99.8 1.7E-18 3.7E-23 126.7 13.5 161 11-179 195-365 (366)
222 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.8E-18 3.9E-23 125.5 13.5 157 14-178 1-220 (224)
223 CHL00071 tufA elongation facto 99.8 5.5E-18 1.2E-22 133.6 17.2 156 4-169 4-181 (409)
224 KOG0072 GTP-binding ADP-ribosy 99.8 1.7E-19 3.7E-24 116.9 6.5 164 11-183 17-181 (182)
225 COG0370 FeoB Fe2+ transport sy 99.8 1.9E-18 4.1E-23 138.5 13.6 158 12-185 3-168 (653)
226 cd04167 Snu114p Snu114p subfam 99.8 2.3E-18 5E-23 124.7 12.6 149 14-170 2-192 (213)
227 cd04169 RF3 RF3 subfamily. Pe 99.8 9.4E-18 2E-22 124.8 15.5 116 13-136 3-138 (267)
228 cd04104 p47_IIGP_like p47 (47- 99.8 1.1E-17 2.4E-22 119.6 14.9 162 12-185 1-188 (197)
229 KOG1707 Predicted Ras related/ 99.8 5.5E-19 1.2E-23 138.4 8.5 168 9-181 6-175 (625)
230 COG0532 InfB Translation initi 99.8 7.7E-18 1.7E-22 131.5 14.7 169 10-189 3-178 (509)
231 COG1084 Predicted GTPase [Gene 99.8 1.7E-17 3.7E-22 122.3 14.5 162 10-183 166-338 (346)
232 PLN03126 Elongation factor Tu; 99.8 2.9E-17 6.4E-22 130.8 17.0 151 8-168 77-249 (478)
233 PLN00043 elongation factor 1-a 99.8 1.4E-18 3E-23 137.7 9.2 153 9-171 4-203 (447)
234 COG2262 HflX GTPases [General 99.8 2.2E-17 4.8E-22 125.2 15.1 166 8-186 188-361 (411)
235 PRK00049 elongation factor Tu; 99.8 2.8E-17 6E-22 129.0 15.8 153 6-168 6-180 (396)
236 cd04170 EF-G_bact Elongation f 99.8 2E-17 4.4E-22 123.8 13.9 113 14-136 1-131 (268)
237 cd01850 CDC_Septin CDC/Septin. 99.8 4.1E-17 9E-22 121.9 15.5 144 11-164 3-185 (276)
238 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 3.8E-18 8.2E-23 123.3 9.1 165 14-185 1-180 (232)
239 PLN03127 Elongation factor Tu; 99.8 4.3E-17 9.4E-22 129.1 14.9 165 6-180 55-251 (447)
240 COG1163 DRG Predicted GTPase [ 99.7 1.7E-16 3.7E-21 116.8 16.0 161 8-181 59-289 (365)
241 PRK05124 cysN sulfate adenylyl 99.7 2.2E-17 4.7E-22 132.0 12.3 156 9-173 24-217 (474)
242 TIGR02034 CysN sulfate adenyly 99.7 2E-17 4.3E-22 130.2 11.9 150 13-171 1-187 (406)
243 cd01886 EF-G Elongation factor 99.7 4.3E-17 9.4E-22 121.4 13.0 141 14-165 1-159 (270)
244 PTZ00141 elongation factor 1- 99.7 5.9E-17 1.3E-21 128.6 14.4 154 9-171 4-203 (446)
245 cd01885 EF2 EF2 (for archaea a 99.7 3.6E-17 7.8E-22 118.2 11.7 113 14-134 2-138 (222)
246 KOG0462 Elongation factor-type 99.7 6E-17 1.3E-21 126.3 13.3 162 10-182 58-236 (650)
247 KOG1145 Mitochondrial translat 99.7 1.6E-16 3.4E-21 124.0 15.0 167 10-188 151-323 (683)
248 PRK05506 bifunctional sulfate 99.7 6.8E-17 1.5E-21 133.9 13.1 155 8-171 20-211 (632)
249 PTZ00327 eukaryotic translatio 99.7 7.1E-17 1.5E-21 127.8 11.9 167 8-181 30-233 (460)
250 PRK00741 prfC peptide chain re 99.7 2.4E-16 5.3E-21 127.1 14.5 119 9-135 7-145 (526)
251 cd01899 Ygr210 Ygr210 subfamil 99.7 3.3E-16 7.1E-21 118.8 14.4 164 15-184 1-272 (318)
252 PRK13351 elongation factor G; 99.7 1.9E-16 4E-21 132.6 13.3 118 9-136 5-140 (687)
253 COG0536 Obg Predicted GTPase [ 99.7 6.3E-16 1.4E-20 114.6 13.6 168 12-184 159-336 (369)
254 KOG1490 GTP-binding protein CR 99.7 9.8E-17 2.1E-21 124.0 9.3 173 9-188 165-348 (620)
255 PF01926 MMR_HSR1: 50S ribosom 99.7 6E-16 1.3E-20 101.4 11.5 106 14-130 1-116 (116)
256 COG5256 TEF1 Translation elong 99.7 9.8E-16 2.1E-20 116.3 12.9 158 8-172 3-202 (428)
257 COG0481 LepA Membrane GTPase L 99.7 1.7E-15 3.8E-20 116.6 14.1 166 8-183 5-188 (603)
258 COG3596 Predicted GTPase [Gene 99.7 5.3E-16 1.1E-20 112.0 9.6 168 8-185 35-226 (296)
259 PRK09602 translation-associate 99.7 5.9E-15 1.3E-19 115.2 15.6 83 13-95 2-113 (396)
260 KOG1191 Mitochondrial GTPase [ 99.7 1.3E-15 2.9E-20 117.6 11.2 172 10-185 266-454 (531)
261 TIGR00484 EF-G translation elo 99.7 2.9E-15 6.4E-20 125.3 14.2 147 9-166 7-171 (689)
262 KOG0077 Vesicle coat complex C 99.6 4.6E-16 1E-20 103.5 6.7 158 10-179 18-191 (193)
263 PF09439 SRPRB: Signal recogni 99.6 7E-16 1.5E-20 106.9 7.9 120 12-136 3-127 (181)
264 TIGR00503 prfC peptide chain r 99.6 4.1E-15 8.9E-20 120.1 12.7 120 9-136 8-147 (527)
265 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 2.2E-14 4.7E-19 102.6 15.1 166 13-185 1-188 (196)
266 KOG3905 Dynein light intermedi 99.6 1.5E-14 3.3E-19 106.6 13.7 171 11-185 51-294 (473)
267 PRK12739 elongation factor G; 99.6 9.9E-15 2.2E-19 122.1 13.2 118 9-136 5-140 (691)
268 PRK09866 hypothetical protein; 99.6 5.4E-14 1.2E-18 113.1 15.8 109 62-178 231-350 (741)
269 COG4917 EutP Ethanolamine util 99.6 5.2E-15 1.1E-19 94.0 7.3 138 14-179 3-144 (148)
270 PRK12740 elongation factor G; 99.6 3.4E-14 7.3E-19 118.9 13.7 109 18-136 1-127 (668)
271 PRK00007 elongation factor G; 99.6 1.8E-14 3.9E-19 120.5 11.9 147 9-166 7-171 (693)
272 PRK14845 translation initiatio 99.6 5.4E-14 1.2E-18 120.1 14.4 148 24-182 473-674 (1049)
273 COG2895 CysN GTPases - Sulfate 99.6 7.7E-14 1.7E-18 104.0 12.8 154 8-170 2-192 (431)
274 KOG1707 Predicted Ras related/ 99.6 1.7E-13 3.7E-18 108.0 15.0 168 5-183 418-585 (625)
275 PF05783 DLIC: Dynein light in 99.6 1.9E-13 4.1E-18 108.3 15.4 174 10-187 23-270 (472)
276 TIGR00490 aEF-2 translation el 99.6 2.8E-14 6E-19 119.8 11.3 118 10-135 17-152 (720)
277 KOG0090 Signal recognition par 99.5 3.9E-13 8.4E-18 93.5 11.5 162 11-179 37-237 (238)
278 PRK13768 GTPase; Provisional 99.5 2.2E-13 4.8E-18 100.8 10.7 116 62-181 98-247 (253)
279 PTZ00258 GTP-binding protein; 99.5 4.5E-13 9.8E-18 103.7 12.7 86 10-95 19-126 (390)
280 TIGR00101 ureG urease accessor 99.5 1E-12 2.2E-17 93.8 13.2 103 61-181 92-196 (199)
281 KOG1532 GTPase XAB1, interacts 99.5 1.2E-13 2.6E-18 99.7 8.2 172 8-185 15-268 (366)
282 COG1217 TypA Predicted membran 99.5 4.8E-13 1E-17 103.1 11.8 161 11-180 4-194 (603)
283 PF03029 ATP_bind_1: Conserved 99.5 1.7E-14 3.7E-19 105.4 3.8 115 62-180 92-236 (238)
284 PRK09435 membrane ATPase/prote 99.5 1.1E-12 2.4E-17 99.8 13.6 111 60-185 148-264 (332)
285 cd01853 Toc34_like Toc34-like 99.5 2E-12 4.3E-17 95.2 14.2 125 8-136 27-164 (249)
286 KOG0458 Elongation factor 1 al 99.5 3.7E-13 7.9E-18 106.2 9.9 165 3-172 168-373 (603)
287 PRK07560 elongation factor EF- 99.5 6.3E-13 1.4E-17 111.9 11.7 118 10-135 18-153 (731)
288 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.7E-12 5.9E-17 96.0 13.4 124 8-135 34-167 (313)
289 cd01882 BMS1 Bms1. Bms1 is an 99.5 2E-12 4.4E-17 94.2 12.3 145 9-169 36-184 (225)
290 PF00735 Septin: Septin; Inte 99.5 1.5E-12 3.4E-17 97.4 11.8 141 11-160 3-180 (281)
291 PLN00116 translation elongatio 99.5 4.2E-13 9.1E-18 114.3 9.8 119 8-134 15-163 (843)
292 smart00010 small_GTPase Small 99.4 1.4E-12 3.1E-17 86.2 10.1 114 13-170 1-115 (124)
293 PF05049 IIGP: Interferon-indu 99.4 6.9E-13 1.5E-17 101.7 9.6 165 9-187 32-224 (376)
294 COG5257 GCD11 Translation init 99.4 7.1E-13 1.5E-17 97.8 8.7 168 10-183 8-204 (415)
295 TIGR00157 ribosome small subun 99.4 1.4E-12 3E-17 96.1 10.3 96 72-178 24-120 (245)
296 PTZ00416 elongation factor 2; 99.4 8.1E-13 1.8E-17 112.5 10.1 118 9-134 16-157 (836)
297 KOG0705 GTPase-activating prot 99.4 5.8E-13 1.3E-17 104.4 8.4 170 10-189 28-197 (749)
298 KOG0461 Selenocysteine-specifi 99.4 7.7E-12 1.7E-16 93.3 13.9 165 9-182 4-194 (522)
299 PRK09601 GTP-binding protein Y 99.4 7.6E-12 1.7E-16 95.9 14.2 83 13-95 3-107 (364)
300 PF04548 AIG1: AIG1 family; I 99.4 1.7E-12 3.8E-17 93.8 9.9 165 13-184 1-189 (212)
301 cd00066 G-alpha G protein alph 99.4 2.1E-11 4.5E-16 93.2 15.5 123 60-185 160-315 (317)
302 KOG3886 GTP-binding protein [S 99.4 1.2E-12 2.5E-17 92.3 6.8 152 12-166 4-164 (295)
303 TIGR00073 hypB hydrogenase acc 99.4 1.6E-11 3.4E-16 88.5 12.6 152 9-179 19-205 (207)
304 TIGR02836 spore_IV_A stage IV 99.4 2.3E-11 5E-16 93.6 13.7 163 9-184 14-237 (492)
305 TIGR00750 lao LAO/AO transport 99.4 2E-11 4.3E-16 92.8 13.1 107 60-181 126-238 (300)
306 COG0050 TufB GTPases - transla 99.4 2.9E-11 6.4E-16 88.4 12.7 192 5-204 5-220 (394)
307 KOG1144 Translation initiation 99.3 1.2E-11 2.5E-16 100.3 11.0 172 9-191 472-697 (1064)
308 COG3276 SelB Selenocysteine-sp 99.3 2.1E-11 4.6E-16 93.8 11.8 158 14-181 2-162 (447)
309 PF00350 Dynamin_N: Dynamin fa 99.3 5.6E-12 1.2E-16 88.0 8.1 63 62-131 102-168 (168)
310 COG4108 PrfC Peptide chain rel 99.3 1.1E-11 2.4E-16 95.1 9.5 121 10-138 10-150 (528)
311 KOG0410 Predicted GTP binding 99.3 5.7E-12 1.2E-16 93.2 7.6 166 8-187 174-347 (410)
312 smart00275 G_alpha G protein a 99.3 9.5E-11 2.1E-15 90.4 14.4 122 61-185 184-338 (342)
313 COG5019 CDC3 Septin family pro 99.3 7.8E-11 1.7E-15 88.8 13.2 144 8-160 19-200 (373)
314 cd01900 YchF YchF subfamily. 99.3 2E-11 4.3E-16 90.8 9.8 81 15-95 1-103 (274)
315 COG0480 FusA Translation elong 99.3 3.4E-11 7.4E-16 99.6 11.6 122 8-137 6-144 (697)
316 KOG2655 Septin family protein 99.3 3.4E-10 7.3E-15 86.0 14.2 151 7-166 16-202 (366)
317 TIGR00993 3a0901s04IAP86 chlor 99.2 3.3E-10 7.1E-15 92.1 13.4 121 10-135 116-250 (763)
318 COG0378 HypB Ni2+-binding GTPa 99.2 3.1E-11 6.7E-16 83.5 6.5 80 87-180 120-200 (202)
319 PF03308 ArgK: ArgK protein; 99.2 2.2E-11 4.8E-16 88.2 5.6 153 10-180 27-229 (266)
320 COG0012 Predicted GTPase, prob 99.2 1.1E-09 2.4E-14 83.2 13.4 84 12-95 2-108 (372)
321 KOG1486 GTP-binding protein DR 99.2 4.9E-09 1.1E-13 75.4 15.6 162 9-182 59-289 (364)
322 KOG0468 U5 snRNP-specific prot 99.2 2.2E-10 4.7E-15 92.1 9.5 117 9-133 125-261 (971)
323 KOG1547 Septin CDC10 and relat 99.2 8.3E-10 1.8E-14 78.7 11.4 150 7-166 41-228 (336)
324 KOG0082 G-protein alpha subuni 99.1 7.2E-10 1.6E-14 84.2 11.1 127 60-187 194-350 (354)
325 smart00053 DYNc Dynamin, GTPas 99.1 5.7E-10 1.2E-14 81.4 10.2 69 61-136 125-207 (240)
326 PRK10463 hydrogenase nickel in 99.1 4.3E-10 9.3E-15 83.8 9.4 58 121-179 230-287 (290)
327 COG5258 GTPBP1 GTPase [General 99.1 7.3E-10 1.6E-14 84.0 10.6 160 8-175 113-333 (527)
328 KOG0460 Mitochondrial translat 99.1 2.1E-09 4.6E-14 80.3 11.0 183 7-197 49-257 (449)
329 COG1703 ArgK Putative periplas 99.1 4.5E-09 9.8E-14 77.5 11.6 107 61-185 144-258 (323)
330 cd01855 YqeH YqeH. YqeH is an 99.0 2.2E-09 4.8E-14 76.4 8.6 95 74-181 24-125 (190)
331 KOG2486 Predicted GTPase [Gene 99.0 1.2E-09 2.6E-14 79.5 7.0 158 9-179 133-314 (320)
332 KOG3887 Predicted small GTPase 99.0 6E-09 1.3E-13 74.5 9.7 168 13-185 28-206 (347)
333 cd01859 MJ1464 MJ1464. This f 99.0 4.4E-09 9.6E-14 72.4 8.1 95 75-182 3-97 (156)
334 PRK12289 GTPase RsgA; Reviewed 98.9 9.4E-09 2E-13 79.4 10.1 89 79-179 84-173 (352)
335 cd01854 YjeQ_engC YjeQ/EngC. 98.9 8.6E-09 1.9E-13 77.9 9.5 88 79-178 73-161 (287)
336 PRK00098 GTPase RsgA; Reviewed 98.9 7.9E-09 1.7E-13 78.5 9.0 87 81-178 77-164 (298)
337 KOG1143 Predicted translation 98.9 1.4E-08 3E-13 77.1 9.7 155 11-173 166-380 (591)
338 PRK12288 GTPase RsgA; Reviewed 98.9 1.4E-08 3E-13 78.4 9.9 89 82-179 118-206 (347)
339 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 6.6E-09 1.4E-13 70.3 5.8 53 14-71 85-138 (141)
340 cd04178 Nucleostemin_like Nucl 98.8 8.9E-09 1.9E-13 71.8 5.7 56 10-70 115-171 (172)
341 TIGR03597 GTPase_YqeH ribosome 98.8 2E-08 4.4E-13 78.2 8.3 99 71-179 50-151 (360)
342 KOG1954 Endocytosis/signaling 98.8 2.8E-08 6E-13 75.3 8.4 119 11-136 57-226 (532)
343 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.5E-08 5.4E-13 68.8 6.9 55 11-70 101-156 (157)
344 cd01856 YlqF YlqF. Proteins o 98.7 3.1E-08 6.8E-13 69.3 6.6 57 10-71 113-170 (171)
345 cd01855 YqeH YqeH. YqeH is an 98.7 2.1E-08 4.6E-13 71.4 5.4 54 12-70 127-189 (190)
346 COG5192 BMS1 GTP-binding prote 98.7 4.1E-07 8.8E-12 72.8 12.8 154 8-180 65-226 (1077)
347 cd01858 NGP_1 NGP-1. Autoanti 98.7 7.4E-08 1.6E-12 66.4 7.7 92 80-181 4-95 (157)
348 KOG0463 GTP-binding protein GP 98.7 1.1E-07 2.4E-12 72.4 8.8 158 10-176 131-353 (641)
349 cd01851 GBP Guanylate-binding 98.7 3E-07 6.5E-12 67.0 10.2 88 9-97 4-104 (224)
350 KOG0467 Translation elongation 98.7 1E-07 2.2E-12 78.2 8.3 120 6-133 3-136 (887)
351 cd01859 MJ1464 MJ1464. This f 98.7 8.1E-08 1.8E-12 66.1 6.7 57 10-70 99-155 (156)
352 PRK09563 rbgA GTPase YlqF; Rev 98.7 1E-07 2.2E-12 72.2 7.4 58 10-72 119-177 (287)
353 TIGR00092 GTP-binding protein 98.7 8.3E-08 1.8E-12 74.1 6.9 83 13-95 3-108 (368)
354 COG1618 Predicted nucleotide k 98.6 3.8E-06 8.3E-11 56.7 13.7 148 10-181 3-176 (179)
355 cd01849 YlqF_related_GTPase Yl 98.6 2.8E-07 6.1E-12 63.4 8.6 84 86-181 1-85 (155)
356 cd01856 YlqF YlqF. Proteins o 98.6 1.4E-07 3E-12 66.0 7.1 99 68-181 2-101 (171)
357 KOG0465 Mitochondrial elongati 98.6 1.2E-07 2.7E-12 76.0 7.4 118 10-137 37-172 (721)
358 TIGR03596 GTPase_YlqF ribosome 98.6 1.2E-07 2.6E-12 71.4 7.0 57 10-71 116-173 (276)
359 KOG0466 Translation initiation 98.6 2.9E-08 6.3E-13 73.4 3.4 179 8-197 34-256 (466)
360 KOG0448 Mitofusin 1 GTPase, in 98.6 1.3E-06 2.8E-11 71.2 12.7 119 10-136 107-276 (749)
361 TIGR03348 VI_IcmF type VI secr 98.6 3.6E-07 7.7E-12 81.2 10.6 113 15-136 114-258 (1169)
362 KOG1487 GTP-binding protein DR 98.6 5.5E-07 1.2E-11 65.3 9.5 157 12-180 59-280 (358)
363 COG1161 Predicted GTPases [Gen 98.6 1.2E-07 2.6E-12 72.7 6.3 56 10-70 130-186 (322)
364 KOG1491 Predicted GTP-binding 98.6 2.3E-07 5E-12 69.6 7.3 86 10-95 18-125 (391)
365 cd01849 YlqF_related_GTPase Yl 98.6 1.5E-07 3.2E-12 64.8 5.9 56 10-70 98-154 (155)
366 KOG3859 Septins (P-loop GTPase 98.6 2.4E-07 5.2E-12 67.8 6.7 122 6-136 36-191 (406)
367 PF03193 DUF258: Protein of un 98.5 9.2E-08 2E-12 65.4 4.1 60 13-75 36-101 (161)
368 TIGR03596 GTPase_YlqF ribosome 98.5 5.5E-07 1.2E-11 67.8 7.8 101 68-183 4-105 (276)
369 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 6.5E-07 1.4E-11 60.5 6.6 77 79-168 6-84 (141)
370 TIGR01425 SRP54_euk signal rec 98.4 2E-06 4.3E-11 68.0 9.7 116 10-135 98-253 (429)
371 PRK10416 signal recognition pa 98.4 1.9E-06 4.1E-11 66.0 9.4 145 11-174 113-303 (318)
372 PRK14974 cell division protein 98.4 2.3E-06 5E-11 65.8 9.0 95 61-174 223-323 (336)
373 PRK12288 GTPase RsgA; Reviewed 98.4 7E-07 1.5E-11 69.1 6.2 22 15-36 208-229 (347)
374 cd03112 CobW_like The function 98.4 1.7E-06 3.7E-11 59.6 7.4 21 15-35 3-23 (158)
375 PRK13796 GTPase YqeH; Provisio 98.4 2.3E-06 5E-11 66.9 8.6 96 73-179 58-157 (365)
376 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.5E-06 3.3E-11 65.8 7.4 101 68-183 7-108 (287)
377 PRK01889 GTPase RsgA; Reviewed 98.4 3.4E-06 7.5E-11 65.7 9.4 84 82-177 110-193 (356)
378 KOG0459 Polypeptide release fa 98.4 2.1E-06 4.5E-11 66.0 7.5 161 7-174 74-279 (501)
379 TIGR00064 ftsY signal recognit 98.4 3.9E-06 8.5E-11 62.9 8.9 96 60-174 154-261 (272)
380 KOG0447 Dynamin-like GTP bindi 98.3 6.1E-06 1.3E-10 66.0 10.2 81 62-150 413-506 (980)
381 KOG0464 Elongation factor G [T 98.3 5.5E-07 1.2E-11 69.5 4.2 121 8-136 33-169 (753)
382 TIGR00157 ribosome small subun 98.3 1.1E-06 2.4E-11 65.0 5.5 23 14-36 122-144 (245)
383 TIGR03597 GTPase_YqeH ribosome 98.3 1.1E-06 2.4E-11 68.6 5.6 55 13-72 155-215 (360)
384 PF09547 Spore_IV_A: Stage IV 98.3 4E-05 8.7E-10 59.8 13.5 163 10-185 15-238 (492)
385 PRK13796 GTPase YqeH; Provisio 98.3 1.4E-06 3.1E-11 68.1 5.4 55 13-72 161-221 (365)
386 PRK12289 GTPase RsgA; Reviewed 98.3 1.7E-06 3.8E-11 67.0 5.6 23 14-36 174-196 (352)
387 COG1162 Predicted GTPases [Gen 98.2 1.9E-06 4.2E-11 64.4 5.1 59 14-75 166-230 (301)
388 PRK13695 putative NTPase; Prov 98.2 5.8E-05 1.2E-09 52.9 11.7 22 13-34 1-22 (174)
389 KOG1533 Predicted GTPase [Gene 98.2 1.7E-06 3.8E-11 61.8 3.1 110 61-176 97-248 (290)
390 cd01854 YjeQ_engC YjeQ/EngC. 98.1 5.9E-06 1.3E-10 62.6 6.0 60 13-75 162-227 (287)
391 KOG0085 G protein subunit Galp 98.1 2.3E-06 5.1E-11 61.1 3.3 123 61-186 199-354 (359)
392 PRK00098 GTPase RsgA; Reviewed 98.1 8.3E-06 1.8E-10 62.1 5.9 25 13-37 165-189 (298)
393 KOG1534 Putative transcription 98.1 1.5E-05 3.2E-10 56.3 6.4 119 62-184 99-254 (273)
394 PF03266 NTPase_1: NTPase; In 98.1 2.4E-05 5.3E-10 54.4 7.5 22 14-35 1-22 (168)
395 PRK14722 flhF flagellar biosyn 98.0 5.6E-05 1.2E-09 59.0 9.8 23 12-34 137-159 (374)
396 PRK11537 putative GTP-binding 98.0 0.00016 3.5E-09 55.5 12.1 22 14-35 6-27 (318)
397 PRK12727 flagellar biosynthesi 98.0 0.00018 3.9E-09 58.4 12.5 23 12-34 350-372 (559)
398 KOG1424 Predicted GTP-binding 98.0 8.6E-06 1.9E-10 64.5 4.9 55 12-71 314-369 (562)
399 PF00503 G-alpha: G-protein al 98.0 7.2E-05 1.6E-09 59.3 9.9 119 61-179 236-388 (389)
400 PF00448 SRP54: SRP54-type pro 98.0 8.2E-05 1.8E-09 53.1 9.2 84 61-162 84-174 (196)
401 cd03115 SRP The signal recogni 98.0 5.6E-05 1.2E-09 52.9 8.1 66 61-136 83-154 (173)
402 COG3523 IcmF Type VI protein s 98.0 5.2E-05 1.1E-09 66.7 9.3 114 15-136 128-271 (1188)
403 COG1162 Predicted GTPases [Gen 97.9 0.00012 2.7E-09 54.9 9.7 88 82-179 77-165 (301)
404 cd03114 ArgK-like The function 97.9 7.4E-05 1.6E-09 50.9 7.9 58 60-132 91-148 (148)
405 PRK00771 signal recognition pa 97.9 0.00015 3.2E-09 57.9 10.1 24 10-33 93-116 (437)
406 KOG2485 Conserved ATP/GTP bind 97.9 2.7E-05 5.8E-10 58.2 5.0 61 9-71 140-206 (335)
407 PRK10867 signal recognition pa 97.9 0.00021 4.6E-09 57.0 10.3 86 61-163 184-275 (433)
408 COG0523 Putative GTPases (G3E 97.9 0.00065 1.4E-08 52.2 12.4 89 61-163 85-184 (323)
409 TIGR00959 ffh signal recogniti 97.8 0.00025 5.4E-09 56.6 10.4 86 61-163 183-274 (428)
410 PF06858 NOG1: Nucleolar GTP-b 97.8 0.00012 2.7E-09 40.5 6.0 45 83-132 12-58 (58)
411 cd02038 FleN-like FleN is a me 97.7 0.00032 6.9E-09 47.3 8.2 106 16-134 4-110 (139)
412 KOG2484 GTPase [General functi 97.7 3.1E-05 6.6E-10 59.7 3.4 56 10-70 250-306 (435)
413 KOG0469 Elongation factor 2 [T 97.7 0.00021 4.6E-09 57.0 7.9 117 9-133 16-162 (842)
414 PF05621 TniB: Bacterial TniB 97.7 1.9E-05 4.2E-10 59.2 2.0 108 7-131 56-190 (302)
415 PF13207 AAA_17: AAA domain; P 97.7 3.7E-05 8E-10 50.4 3.0 21 14-34 1-21 (121)
416 KOG3929 Uncharacterized conser 97.7 6.6E-06 1.4E-10 59.8 -0.6 153 9-165 42-236 (363)
417 KOG4273 Uncharacterized conser 97.7 0.00039 8.4E-09 50.6 8.1 114 13-136 5-124 (418)
418 PRK08118 topology modulation p 97.6 4.9E-05 1.1E-09 52.9 3.2 23 13-35 2-24 (167)
419 PF13671 AAA_33: AAA domain; P 97.6 4.8E-05 1E-09 51.4 2.9 20 15-34 2-21 (143)
420 PRK12726 flagellar biosynthesi 97.6 0.00052 1.1E-08 53.6 8.7 23 11-33 205-227 (407)
421 COG0563 Adk Adenylate kinase a 97.6 4.8E-05 1E-09 53.4 2.9 23 13-35 1-23 (178)
422 PRK14723 flhF flagellar biosyn 97.6 0.00044 9.4E-09 58.6 8.8 154 13-183 186-381 (767)
423 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00084 1.8E-08 41.7 8.1 69 15-97 2-71 (99)
424 TIGR00235 udk uridine kinase. 97.6 8.6E-05 1.9E-09 53.6 3.9 29 7-35 1-29 (207)
425 TIGR02475 CobW cobalamin biosy 97.6 0.0018 3.8E-08 50.4 11.2 21 15-35 7-27 (341)
426 PRK07261 topology modulation p 97.6 6.3E-05 1.4E-09 52.6 3.0 21 14-34 2-22 (171)
427 PF03215 Rad17: Rad17 cell cyc 97.6 0.0015 3.3E-08 53.5 11.2 90 86-180 133-229 (519)
428 PF13521 AAA_28: AAA domain; P 97.6 5.3E-05 1.1E-09 52.5 2.4 22 14-35 1-22 (163)
429 KOG0099 G protein subunit Galp 97.5 0.00029 6.4E-09 51.6 5.8 126 60-188 201-376 (379)
430 PRK05703 flhF flagellar biosyn 97.5 0.0015 3.2E-08 52.3 10.4 90 61-169 300-396 (424)
431 PRK12723 flagellar biosynthesi 97.5 0.0022 4.8E-08 50.6 11.2 140 11-169 173-351 (388)
432 cd02019 NK Nucleoside/nucleoti 97.5 0.00012 2.6E-09 42.9 3.0 21 15-35 2-22 (69)
433 PRK06995 flhF flagellar biosyn 97.5 0.00088 1.9E-08 54.2 8.8 22 13-34 257-278 (484)
434 COG1419 FlhF Flagellar GTP-bin 97.5 0.0014 2.9E-08 51.4 9.3 157 12-185 203-398 (407)
435 cd00009 AAA The AAA+ (ATPases 97.5 0.00083 1.8E-08 45.0 7.5 25 12-36 19-43 (151)
436 PF13555 AAA_29: P-loop contai 97.5 0.00014 3E-09 41.3 2.9 21 14-34 25-45 (62)
437 PRK10751 molybdopterin-guanine 97.4 0.00015 3.3E-09 50.5 3.5 26 10-35 4-29 (173)
438 COG1126 GlnQ ABC-type polar am 97.4 0.00011 2.4E-09 52.3 2.8 23 14-36 30-52 (240)
439 PF04665 Pox_A32: Poxvirus A32 97.4 0.00013 2.8E-09 53.4 3.1 27 9-35 10-36 (241)
440 KOG2423 Nucleolar GTPase [Gene 97.4 5.1E-05 1.1E-09 58.6 0.9 60 7-70 302-361 (572)
441 cd02042 ParA ParA and ParB of 97.4 0.0012 2.5E-08 42.0 7.1 82 15-108 2-84 (104)
442 PF00004 AAA: ATPase family as 97.4 0.00016 3.6E-09 47.9 3.1 21 15-35 1-21 (132)
443 PTZ00088 adenylate kinase 1; P 97.4 0.00017 3.7E-09 52.8 3.3 25 10-34 4-28 (229)
444 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00066 1.4E-08 45.1 5.8 23 13-35 23-45 (133)
445 PF00005 ABC_tran: ABC transpo 97.4 0.00018 4E-09 48.1 3.0 23 14-36 13-35 (137)
446 COG1136 SalX ABC-type antimicr 97.3 0.00016 3.6E-09 52.3 2.8 22 14-35 33-54 (226)
447 smart00382 AAA ATPases associa 97.3 0.00022 4.8E-09 47.5 3.2 26 13-38 3-28 (148)
448 COG3640 CooC CO dehydrogenase 97.3 0.0016 3.4E-08 47.2 7.5 63 62-134 135-198 (255)
449 PF03205 MobB: Molybdopterin g 97.3 0.00024 5.3E-09 47.8 3.2 23 14-36 2-24 (140)
450 PRK05480 uridine/cytidine kina 97.3 0.00029 6.3E-09 50.9 3.8 26 10-35 4-29 (209)
451 PF05729 NACHT: NACHT domain 97.3 0.00064 1.4E-08 46.8 5.3 22 15-36 3-24 (166)
452 PRK06217 hypothetical protein; 97.3 0.00023 4.9E-09 50.3 3.0 23 13-35 2-24 (183)
453 PRK14530 adenylate kinase; Pro 97.3 0.00023 5E-09 51.7 3.1 20 14-33 5-24 (215)
454 PF13238 AAA_18: AAA domain; P 97.3 0.00022 4.8E-09 47.0 2.8 21 15-35 1-21 (129)
455 COG1116 TauB ABC-type nitrate/ 97.3 0.00022 4.7E-09 52.0 2.9 22 15-36 32-53 (248)
456 PRK14738 gmk guanylate kinase; 97.3 0.00037 8.1E-09 50.2 4.1 28 8-35 9-36 (206)
457 cd00071 GMPK Guanosine monopho 97.3 0.00025 5.5E-09 47.6 3.0 21 15-35 2-22 (137)
458 PRK03839 putative kinase; Prov 97.3 0.00023 5E-09 50.1 2.8 22 14-35 2-23 (180)
459 COG0194 Gmk Guanylate kinase [ 97.3 0.00022 4.7E-09 49.7 2.5 25 12-36 4-28 (191)
460 PLN02200 adenylate kinase fami 97.3 0.00036 7.8E-09 51.3 3.8 26 9-34 40-65 (234)
461 PRK10646 ADP-binding protein; 97.2 0.0018 4E-08 44.0 6.9 22 14-35 30-51 (153)
462 PF02367 UPF0079: Uncharacteri 97.2 0.00067 1.4E-08 44.4 4.5 24 12-35 15-38 (123)
463 cd01131 PilT Pilus retraction 97.2 0.0012 2.5E-08 47.4 6.2 22 15-36 4-25 (198)
464 cd03111 CpaE_like This protein 97.2 0.0045 9.8E-08 39.5 8.2 63 62-130 44-106 (106)
465 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00028 6.1E-09 49.9 2.9 21 13-33 4-24 (188)
466 TIGR02322 phosphon_PhnN phosph 97.2 0.0003 6.6E-09 49.5 3.0 22 14-35 3-24 (179)
467 PF07728 AAA_5: AAA domain (dy 97.2 0.00035 7.7E-09 46.9 3.1 22 14-35 1-22 (139)
468 PRK08233 hypothetical protein; 97.2 0.00039 8.5E-09 48.9 3.5 24 12-35 3-26 (182)
469 PRK10078 ribose 1,5-bisphospho 97.2 0.00034 7.4E-09 49.6 3.1 22 14-35 4-25 (186)
470 PRK13833 conjugal transfer pro 97.2 0.0015 3.2E-08 50.3 6.7 25 12-36 144-168 (323)
471 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0019 4.2E-08 48.4 7.2 23 14-36 82-104 (264)
472 cd02023 UMPK Uridine monophosp 97.2 0.00034 7.3E-09 50.1 3.0 21 15-35 2-22 (198)
473 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00036 7.9E-09 44.4 2.7 21 13-33 16-36 (107)
474 PRK14531 adenylate kinase; Pro 97.2 0.00036 7.7E-09 49.4 3.0 22 13-34 3-24 (183)
475 PRK14532 adenylate kinase; Pro 97.2 0.00032 7E-09 49.8 2.8 21 14-34 2-22 (188)
476 PRK13949 shikimate kinase; Pro 97.2 0.0004 8.6E-09 48.4 3.2 21 14-34 3-23 (169)
477 PRK13851 type IV secretion sys 97.2 0.0017 3.6E-08 50.5 6.8 27 11-37 161-187 (344)
478 TIGR03263 guanyl_kin guanylate 97.2 0.00034 7.4E-09 49.2 2.9 22 14-35 3-24 (180)
479 cd01130 VirB11-like_ATPase Typ 97.2 0.00039 8.5E-09 49.3 3.2 24 12-35 25-48 (186)
480 PRK01889 GTPase RsgA; Reviewed 97.1 0.00063 1.4E-08 53.2 4.3 24 13-36 196-219 (356)
481 COG1120 FepC ABC-type cobalami 97.1 0.00038 8.1E-09 51.5 2.9 21 14-34 30-50 (258)
482 PRK13900 type IV secretion sys 97.1 0.0018 3.8E-08 50.2 6.6 27 11-37 159-185 (332)
483 COG0802 Predicted ATPase or ki 97.1 0.0019 4.1E-08 43.5 5.7 25 12-36 25-49 (149)
484 cd02025 PanK Pantothenate kina 97.1 0.00042 9E-09 50.5 2.9 21 15-35 2-22 (220)
485 PRK02496 adk adenylate kinase; 97.1 0.00051 1.1E-08 48.6 3.2 22 13-34 2-23 (184)
486 cd03238 ABC_UvrA The excision 97.1 0.0005 1.1E-08 48.2 3.0 23 11-33 20-42 (176)
487 COG3638 ABC-type phosphate/pho 97.1 0.00045 9.8E-09 49.9 2.7 21 14-34 32-52 (258)
488 PRK09270 nucleoside triphospha 97.1 0.00064 1.4E-08 49.9 3.6 28 9-36 30-57 (229)
489 cd01428 ADK Adenylate kinase ( 97.1 0.00043 9.4E-09 49.3 2.6 22 14-35 1-22 (194)
490 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.0005 1.1E-08 48.5 2.9 20 15-34 2-21 (183)
491 PRK13894 conjugal transfer ATP 97.1 0.0023 5E-08 49.2 6.7 25 11-35 147-171 (319)
492 TIGR00554 panK_bact pantothena 97.1 0.00067 1.5E-08 51.3 3.6 25 9-33 59-83 (290)
493 KOG3347 Predicted nucleotide k 97.1 0.00039 8.5E-09 46.6 2.1 25 10-34 5-29 (176)
494 PTZ00301 uridine kinase; Provi 97.0 0.00065 1.4E-08 49.0 3.3 23 11-33 2-24 (210)
495 PRK14737 gmk guanylate kinase; 97.0 0.00073 1.6E-08 47.9 3.5 26 11-36 3-28 (186)
496 TIGR01351 adk adenylate kinase 97.0 0.00045 9.7E-09 50.0 2.5 21 14-34 1-21 (210)
497 cd03222 ABC_RNaseL_inhibitor T 97.0 0.00057 1.2E-08 48.0 3.0 23 14-36 27-49 (177)
498 PRK06547 hypothetical protein; 97.0 0.00078 1.7E-08 47.1 3.5 27 9-35 12-38 (172)
499 COG1121 ZnuC ABC-type Mn/Zn tr 97.0 0.00055 1.2E-08 50.4 2.9 21 14-34 32-52 (254)
500 COG3840 ThiQ ABC-type thiamine 97.0 0.00066 1.4E-08 47.3 3.0 22 13-34 26-47 (231)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-44 Score=242.66 Aligned_cols=179 Identities=40% Similarity=0.720 Sum_probs=168.5
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGA 85 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (210)
...-++.|||+|+|+.|+|||+|+.||..+.|...+..|+++++..+.+.++++.+++++|||+||++|+.+..+|++++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCc-EEEecCC
Q 028305 86 DCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIP-YFETSAK 164 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~ 164 (210)
|++|+|||+++..||+++..|+.++.++... ++|.++||||+|+.+. +.+..++++.|+...+ ++ ++++||+
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~----~v~~lLVGNK~Dl~~~--~~v~~~~a~~fa~~~~-~~~f~ETSAK 155 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASE----NVPKLLVGNKCDLTEK--RVVSTEEAQEFADELG-IPIFLETSAK 155 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccC----CCCeEEEeeccccHhh--eecCHHHHHHHHHhcC-CcceeecccC
Confidence 9999999999999999999999999998776 7899999999999887 8999999999999999 55 9999999
Q ss_pred CCCChHHHHHHHHHHHHhcccccccCC
Q 028305 165 EDCNIDEAFLCVAEIALKNEHKDIYYQ 191 (210)
Q Consensus 165 ~~~~v~~~~~~l~~~~~~~~~~~~~~~ 191 (210)
++.||+++|..|+..+.+.........
T Consensus 156 ~~~NVe~~F~~la~~lk~~~~~~~~~~ 182 (205)
T KOG0084|consen 156 DSTNVEDAFLTLAKELKQRKGLHVKWS 182 (205)
T ss_pred CccCHHHHHHHHHHHHHHhcccCCCCC
Confidence 999999999999999998877655544
No 2
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.5e-43 Score=237.08 Aligned_cols=203 Identities=68% Similarity=1.086 Sum_probs=184.0
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
.+...+||.++|++|+|||||++++.+..|..++..+++.++..+.+.++++.+.+++|||+|+++|+++...+++.+|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
.+++||++++.+|+++..|.+++..++.+......|+||+|||+|+.+...+++..+.+...+...++++|+++||++..
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 99999999999999999999999999998888899999999999999887799999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcccccc---cCCCCCcceeccccccccccCC
Q 028305 168 NIDEAFLCVAEIALKNEHKDI---YYQPQGISETVSEVEQRGGCAC 210 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~c~c 210 (210)
||.++|..+.+.++..+..+. ......+....+....+++|.|
T Consensus 165 NV~~AFe~ia~~aL~~E~~~~~~~~~~~d~i~~~~~~~~~~~~c~c 210 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDREIAELADYSDQIVLSTKANNQSSGCEC 210 (210)
T ss_pred cHHHHHHHHHHHHHhccchhhhhhhhcCcccccccccccCCCCCCC
Confidence 999999999999999986522 1223334443444444557877
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-41 Score=229.41 Aligned_cols=194 Identities=38% Similarity=0.673 Sum_probs=172.3
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...+||+++|+.++|||||+.|+..+.|.....++++..+..+.+.+++..+++.||||+|+++|.++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 46899999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
+|||+++.+||..+..|.+++.+...+ ++-+.+||||+|+.+. +++..+++..++...+ ..++++||++|.|+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~----~~vialvGNK~DL~~~--R~V~~~ea~~yAe~~g-ll~~ETSAKTg~Nv 155 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASP----NIVIALVGNKADLLER--REVEFEEAQAYAESQG-LLFFETSAKTGENV 155 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCC----CeEEEEecchhhhhhc--ccccHHHHHHHHHhcC-CEEEEEecccccCH
Confidence 999999999999999999999998775 7778899999999875 8999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHHhcccccccC---CCCCcceecc-ccccccccCC
Q 028305 170 DEAFLCVAEIALKNEHKDIYY---QPQGISETVS-EVEQRGGCAC 210 (210)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~c~c 210 (210)
+++|..|.+++.......... .+...-.... .+...++|||
T Consensus 156 ~~if~~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~C~ 200 (200)
T KOG0092|consen 156 NEIFQAIAEKLPCSDPQERQGLPNRRQGVDLNSNQEPARPSGCCA 200 (200)
T ss_pred HHHHHHHHHhccCccccccccccccccceecccCCCCcCcCCcCC
Confidence 999999999999887754431 1122222111 4777888954
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-41 Score=225.96 Aligned_cols=169 Identities=36% Similarity=0.619 Sum_probs=158.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
+.+||+|+|+.++||||||+||+.+.|...|.+++++++....+.+.+..+.+++|||+||++|+.+.+.|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|||+++..+|++..+|+..+.+.... .++-+++||||.||.+. +++..+++...+++++ ..|+++||+.|.||+
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs---~~viI~LVGnKtDL~dk--rqvs~eEg~~kAkel~-a~f~etsak~g~NVk 174 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGS---DDVIIFLVGNKTDLSDK--RQVSIEEGERKAKELN-AEFIETSAKAGENVK 174 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCC---CceEEEEEcccccccch--hhhhHHHHHHHHHHhC-cEEEEecccCCCCHH
Confidence 99999999999999999999876443 35788999999999987 8999999999999999 799999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 028305 171 EAFLCVAEIALKNEH 185 (210)
Q Consensus 171 ~~~~~l~~~~~~~~~ 185 (210)
.+|..|..++.....
T Consensus 175 ~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 175 QLFRRIAAALPGMEV 189 (221)
T ss_pred HHHHHHHHhccCccc
Confidence 999999888877755
No 5
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-40 Score=228.25 Aligned_cols=175 Identities=40% Similarity=0.682 Sum_probs=166.3
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
+.+..+||+++|++|||||+|+.+|..+.|...+..+.++++..+.+..++..+.+++|||+|+++++.+...|++.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
+++|||+++..+|+++..|+..+..+... ++|.++||||+|+... ++++.+.++.++..++ +.++++||++|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~----~v~~~LvGNK~D~~~~--R~V~~e~ge~lA~e~G-~~F~EtSAk~~~ 160 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASD----DVVKILVGNKCDLEEK--RQVSKERGEALAREYG-IKFFETSAKTNF 160 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCC----CCcEEEeecccccccc--ccccHHHHHHHHHHhC-CeEEEccccCCC
Confidence 99999999999999999999999988765 8999999999999875 9999999999999998 999999999999
Q ss_pred ChHHHHHHHHHHHHhccccccc
Q 028305 168 NIDEAFLCVAEIALKNEHKDIY 189 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~~~~~~~ 189 (210)
||+++|..|++.+.....+...
T Consensus 161 NI~eaF~~La~~i~~k~~~~~~ 182 (207)
T KOG0078|consen 161 NIEEAFLSLARDILQKLEDAEL 182 (207)
T ss_pred CHHHHHHHHHHHHHhhcchhhh
Confidence 9999999999999987665443
No 6
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.5e-39 Score=213.08 Aligned_cols=175 Identities=37% Similarity=0.576 Sum_probs=162.2
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
......+||+++|..|+|||||+.+|+.+.|.+..+.+++.++..+.+.+++..+++.+|||+|+++|+.++++|++.+.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 34567899999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
++|+|||++.+++|..+..|.+++..+.... ++-.++|+||+|..+. +.+..+++..|+++++ .-++++||++.
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~---diikmlVgNKiDkes~--R~V~reEG~kfAr~h~-~LFiE~SAkt~ 159 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNP---DIIKMLVGNKIDKESE--RVVDREEGLKFARKHR-CLFIECSAKTR 159 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCc---cHhHhhhcccccchhc--ccccHHHHHHHHHhhC-cEEEEcchhhh
Confidence 9999999999999999999999998876543 6677899999998765 8999999999999999 89999999999
Q ss_pred CChHHHHHHHHHHHHhccccc
Q 028305 167 CNIDEAFLCVAEIALKNEHKD 187 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~~~~~~ 187 (210)
+||...|+.+++++++...-.
T Consensus 160 ~~V~~~FeelveKIi~tp~l~ 180 (209)
T KOG0080|consen 160 ENVQCCFEELVEKIIETPSLW 180 (209)
T ss_pred ccHHHHHHHHHHHHhcCcchh
Confidence 999999999999999876633
No 7
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-39 Score=217.96 Aligned_cols=175 Identities=34% Similarity=0.634 Sum_probs=165.1
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
.....||++++|+.|+|||+|+.+|+...|.+.+..|.++++....+++++..+++++|||+|++.+++....|++.+.+
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
+++|||+++.++|..+..|+..+.++..+ ++-+++++||+|+... +.+..+|++.|+++.+ ..++++||+++.
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~----NmvImLiGNKsDL~~r--R~Vs~EEGeaFA~ehg-LifmETSakt~~ 154 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNE----NMVIMLIGNKSDLEAR--REVSKEEGEAFAREHG-LIFMETSAKTAE 154 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCC----CcEEEEEcchhhhhcc--ccccHHHHHHHHHHcC-ceeehhhhhhhh
Confidence 99999999999999999999999988644 8899999999999877 8999999999999988 889999999999
Q ss_pred ChHHHHHHHHHHHHhccccccc
Q 028305 168 NIDEAFLCVAEIALKNEHKDIY 189 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~~~~~~~ 189 (210)
||+|+|......+++..+.+..
T Consensus 155 ~VEEaF~nta~~Iy~~~q~g~~ 176 (216)
T KOG0098|consen 155 NVEEAFINTAKEIYRKIQDGVF 176 (216)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999988775544
No 8
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.2e-39 Score=229.77 Aligned_cols=195 Identities=38% Similarity=0.633 Sum_probs=163.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD-DKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
+||+++|++|+|||||+++|+++.+...+.++.+.++....+.++ +..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888898888877777777 7789999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHH
Q 028305 92 YDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDE 171 (210)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (210)
||++++.+|+.+..|+..+..........++|+++|+||+|+... +....+++..+++..+...++++||++|.|+++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e 158 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR--LAKDGEQMDQFCKENGFIGWFETSAKEGINIEE 158 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccc--cccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence 999999999999999988876543223347899999999999753 556778889999888767899999999999999
Q ss_pred HHHHHHHHHHhcccccccCC-----CCCcceeccccccccccCC
Q 028305 172 AFLCVAEIALKNEHKDIYYQ-----PQGISETVSEVEQRGGCAC 210 (210)
Q Consensus 172 ~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~c~c 210 (210)
+|++|++.+.+..+...... +...-.+..+..+.++| |
T Consensus 159 ~f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 201 (201)
T cd04107 159 AMRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGC-C 201 (201)
T ss_pred HHHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCC-C
Confidence 99999999988765333322 22233445677777899 7
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=9.7e-38 Score=220.89 Aligned_cols=176 Identities=31% Similarity=0.549 Sum_probs=156.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
+..+||+++|+.|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999998888777778888887777888899999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
+|||++++.+|+.+..|+..+..... ++|++||+||.|+... +.+..++++.+++..+ ..++++||++|.||
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~~-----~~piilVGNK~DL~~~--~~v~~~~~~~~a~~~~-~~~~e~SAk~g~~V 155 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHAP-----GVPKILVGNRLHLAFK--RQVATEQAQAYAERNG-MTFFEVSPLCNFNI 155 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccchhc--cCCCHHHHHHHHHHcC-CEEEEecCCCCCCH
Confidence 99999999999999999999976542 7899999999999754 5677889999999887 89999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCC
Q 028305 170 DEAFLCVAEIALKNEHKDIYYQPQ 193 (210)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~~~~~~ 193 (210)
+++|+++++.+...+.+.+..+++
T Consensus 156 ~~~F~~l~~~i~~~~~~~~~~~~~ 179 (189)
T cd04121 156 TESFTELARIVLMRHGRPPQSPPQ 179 (189)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCc
Confidence 999999999998877755554443
No 10
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-38 Score=215.15 Aligned_cols=174 Identities=39% Similarity=0.659 Sum_probs=164.8
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
..-++.|||+++|++++|||-|+.||..+.|..+..++++.++....+.++++.++.+||||+|+++|+.....|++.+.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
++++|||++...+|+++.+|+.++..+... ++++++|+||+||..- +.++.++++.+++..+ ..++++||.++
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~----nivimLvGNK~DL~~l--raV~te~~k~~Ae~~~-l~f~EtSAl~~ 161 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADS----NIVIMLVGNKSDLNHL--RAVPTEDGKAFAEKEG-LFFLETSALDA 161 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCC----CeEEEEeecchhhhhc--cccchhhhHhHHHhcC-ceEEEeccccc
Confidence 999999999999999999999999988765 8999999999999874 8899999999999998 99999999999
Q ss_pred CChHHHHHHHHHHHHhccccc
Q 028305 167 CNIDEAFLCVAEIALKNEHKD 187 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~~~~~~ 187 (210)
.|++++|..++..+++...++
T Consensus 162 tNVe~aF~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 162 TNVEKAFERVLTEIYKIVSKK 182 (222)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998776644
No 11
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=9.5e-39 Score=206.59 Aligned_cols=191 Identities=38% Similarity=0.686 Sum_probs=170.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...++.+++|++|+|||+|+.+|..+.|+..|..+++.++..+.+.+++..++++||||+|++.|..+...+++..++++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
+|||+++.+||.+..+|+.++...+. .+|-++|+||.|..+. +.+..++.+.++...+ +.+|++|+++++|+
T Consensus 86 vVYDVTn~ESF~Nv~rWLeei~~ncd-----sv~~vLVGNK~d~~~R--rvV~t~dAr~~A~~mg-ie~FETSaKe~~Nv 157 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKRWLEEIRNNCD-----SVPKVLVGNKNDDPER--RVVDTEDARAFALQMG-IELFETSAKENENV 157 (198)
T ss_pred EEEECcchhhhHhHHHHHHHHHhcCc-----cccceecccCCCCccc--eeeehHHHHHHHHhcC-chheehhhhhcccc
Confidence 99999999999999999999998876 7899999999999876 8899999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHhccc--ccccCCCCCcceeccccccccccCC
Q 028305 170 DEAFLCVAEIALKNEH--KDIYYQPQGISETVSEVEQRGGCAC 210 (210)
Q Consensus 170 ~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~c~c 210 (210)
+..|.-|.+..++... +.+..+....+....+.+.+ .| |
T Consensus 158 E~mF~cit~qvl~~k~r~~~~~~r~~~~~l~~n~~~~~-k~-c 198 (198)
T KOG0079|consen 158 EAMFHCITKQVLQAKLRESVEQQRADAVSLKDNSKSTK-KC-C 198 (198)
T ss_pred hHHHHHHHHHHHHHHHhhcHHHHhhcceEeccCCCccc-cC-C
Confidence 9999999999888763 33334455555544444444 56 5
No 12
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=4.1e-37 Score=219.62 Aligned_cols=167 Identities=39% Similarity=0.691 Sum_probs=149.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
++|+++|+.|+|||||+++|..+.|...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36999999999999999999999998888889888888888889998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|++++++|+.+..|+..+..... .++|+++|+||+|+... +++..+++..+++......++++||++|.|++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~----~~~piilVgNK~DL~~~--~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~ 154 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLDCETD--REISRQQGEKFAQQITGMRFCEASAKDNFNVDEI 154 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence 99999999999999988766532 27899999999999754 6677888888888764478999999999999999
Q ss_pred HHHHHHHHHhccc
Q 028305 173 FLCVAEIALKNEH 185 (210)
Q Consensus 173 ~~~l~~~~~~~~~ 185 (210)
|+++++.+.+...
T Consensus 155 F~~l~~~~~~~~~ 167 (202)
T cd04120 155 FLKLVDDILKKMP 167 (202)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999877543
No 13
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.8e-37 Score=217.55 Aligned_cols=190 Identities=38% Similarity=0.627 Sum_probs=161.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCC-cccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQ-QYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
+||+++|++|||||||+++|..+.+.. .+.++.+.++....+.+++..+.+.+|||||++.+......+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888753 5667777777766778888889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHH
Q 028305 92 YDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDE 171 (210)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (210)
||++++++++.+..|+..+...... ++|+++|+||+|+... +....++...++...+ .+++++||++|.|+++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~NK~Dl~~~--~~~~~~~~~~l~~~~~-~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQE----DVVIMLLGNKADMSGE--RVVKREDGERLAKEYG-VPFMETSAKTGLNVEL 153 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEEcccchhc--cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHH
Confidence 9999999999999999888776432 6899999999999653 4556677888887777 7999999999999999
Q ss_pred HHHHHHHHHHhcccccccCCCCCcceeccccccccccCC
Q 028305 172 AFLCVAEIALKNEHKDIYYQPQGISETVSEVEQRGGCAC 210 (210)
Q Consensus 172 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 210 (210)
+|.+|++.+............-..........|+++| |
T Consensus 154 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 191 (191)
T cd04112 154 AFTAVAKELKHRKYEQPDEGKFKISDYVTKQKKISRC-C 191 (191)
T ss_pred HHHHHHHHHHHhccccCCCCcEEeccccCcccccCCC-C
Confidence 9999999998886654444443455666888999999 7
No 14
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.8e-36 Score=215.60 Aligned_cols=187 Identities=38% Similarity=0.683 Sum_probs=159.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998778888888887778888888899999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|+++++++..+..|+..+...... ++|+++|+||+|+.+. +.+..++...+++..+ .+++++||++|.|++++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~----~~~~ivv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~evSa~~~~~i~~~ 153 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARE----NVIKVIVANKSDLVNN--KVVDSNIAKSFCDSLN-IPFFETSAKQSINVEEA 153 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECCCCccc--ccCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 999999999999999988776432 5799999999999754 4556677777887776 69999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCcceeccccccccccCC
Q 028305 173 FLCVAEIALKNEHKDIYYQPQGISETVSEVEQRGGCAC 210 (210)
Q Consensus 173 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 210 (210)
|.+|++.+.+.....+..+ ........++..|+|
T Consensus 154 f~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 187 (188)
T cd04125 154 FILLVKLIIKRLEEQELSP----KNIKQQFKKKNNCFI 187 (188)
T ss_pred HHHHHHHHHHHhhcCcCCc----cccccccccccCccc
Confidence 9999999987665444433 444566777777876
No 15
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=3e-36 Score=216.03 Aligned_cols=192 Identities=38% Similarity=0.716 Sum_probs=162.0
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 46899999999999999999999999888788888888887778888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
+|||++++++++.+..|+..+..... ..|+++|+||+|+.+. .....++...++...+ ..++++||++|.|+
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~~-----~~piivVgNK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~gi 155 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNCD-----DVCKVLVGNKNDDPER--KVVETEDAYKFAGQMG-ISLFETSAKENINV 155 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEECCCCcCH
Confidence 99999999999999999998876543 6799999999999754 4456677788887777 88999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCC----cceeccccccccccCC
Q 028305 170 DEAFLCVAEIALKNEHKDIYYQPQG----ISETVSEVEQRGGCAC 210 (210)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~c~c 210 (210)
+++|++|.+.++......-...... .....+.+.+++.| |
T Consensus 156 ~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 199 (199)
T cd04110 156 EEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRC-C 199 (199)
T ss_pred HHHHHHHHHHHHHhhhccCcccccCCccccCccchhccccccC-C
Confidence 9999999999988766443333222 33444566777888 6
No 16
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-37 Score=201.30 Aligned_cols=180 Identities=36% Similarity=0.580 Sum_probs=168.2
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGA 85 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (210)
+...+..||++++|+.|+|||+|+++|+.+.|.++..+++++++..+.+++.++.+++++|||+|+++|++....|++.+
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCC
Q 028305 86 DCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKE 165 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (210)
-+.++|||+++.++|+.+..|+........+ ++.+++++||.|+.+. +++...+...|++... ..+.++|+++
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~----nIvviL~GnKkDL~~~--R~VtflEAs~FaqEne-l~flETSa~T 155 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLASP----NIVVILCGNKKDLDPE--REVTFLEASRFAQENE-LMFLETSALT 155 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCCC----cEEEEEeCChhhcChh--hhhhHHHHHhhhcccc-eeeeeecccc
Confidence 9999999999999999999999999887766 8899999999999887 8999999999999887 7999999999
Q ss_pred CCChHHHHHHHHHHHHhcccccccCCC
Q 028305 166 DCNIDEAFLCVAEIALKNEHKDIYYQP 192 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~~~~~~~~~~ 192 (210)
|+|++|.|-...+.++...+.++..+.
T Consensus 156 GeNVEEaFl~c~~tIl~kIE~GElDPe 182 (214)
T KOG0086|consen 156 GENVEEAFLKCARTILNKIESGELDPE 182 (214)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCCCHH
Confidence 999999999999999988887766443
No 17
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=3.3e-36 Score=212.11 Aligned_cols=168 Identities=23% Similarity=0.460 Sum_probs=148.2
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
+...+||+++|++|+|||||+++|..+.+...+.|+.+..+ ...+.+++..+.+.+|||+|++.+..+...+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 45688999999999999999999999999888888887655 45677889999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC----------CCcccchHHHHHHHHHcCCCc
Q 028305 89 VLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKIDTDGG----------SSRVVPQKKALEWCAYRGNIP 157 (210)
Q Consensus 89 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~----------~~~~~~~~~~~~~~~~~~~~~ 157 (210)
|+|||++++.+|+.+ ..|+..+..... +.|++||+||+|+.+. ..+.+..+++.++++..+...
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 155 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT 155 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCE
Confidence 999999999999997 789988877643 6899999999998642 124688899999999998668
Q ss_pred EEEecCCCCCC-hHHHHHHHHHHHHh
Q 028305 158 YFETSAKEDCN-IDEAFLCVAEIALK 182 (210)
Q Consensus 158 ~~~~Sa~~~~~-v~~~~~~l~~~~~~ 182 (210)
|+++||++|.| |+++|..+++.++.
T Consensus 156 ~~E~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 156 YIECSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred EEECCcCCCCCCHHHHHHHHHHHHhc
Confidence 99999999998 99999999997653
No 18
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=6.9e-36 Score=216.42 Aligned_cols=174 Identities=37% Similarity=0.648 Sum_probs=153.4
Q ss_pred ccccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccC
Q 028305 5 VNMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84 (210)
Q Consensus 5 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (210)
.....+..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.
T Consensus 5 ~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 84 (216)
T PLN03110 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84 (216)
T ss_pred cccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCC
Confidence 34445678999999999999999999999998887788888888888888888989999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCC
Q 028305 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK 164 (210)
Q Consensus 85 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (210)
++++++|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....++...++...+ .+++++||+
T Consensus 85 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~----~~piiiv~nK~Dl~~~--~~~~~~~~~~l~~~~~-~~~~e~SA~ 157 (216)
T PLN03110 85 AVGALLVYDITKRQTFDNVQRWLRELRDHADS----NIVIMMAGNKSDLNHL--RSVAEEDGQALAEKEG-LSFLETSAL 157 (216)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhCCC----CCeEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CEEEEEeCC
Confidence 99999999999999999999999888766432 7899999999999654 5566777888887776 899999999
Q ss_pred CCCChHHHHHHHHHHHHhccc
Q 028305 165 EDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 165 ~~~~v~~~~~~l~~~~~~~~~ 185 (210)
+|.|++++|++++..+.+...
T Consensus 158 ~g~~v~~lf~~l~~~i~~~~~ 178 (216)
T PLN03110 158 EATNVEKAFQTILLEIYHIIS 178 (216)
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999877543
No 19
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=6.3e-36 Score=209.46 Aligned_cols=163 Identities=31% Similarity=0.569 Sum_probs=143.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||++++..+.|...+.++.+..+ ...+.+++..+++.+|||+|++++..+...+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888888887665 455678889999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC--------CcccchHHHHHHHHHcCCCcEEEecC
Q 028305 93 DVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKIDTDGGS--------SRVVPQKKALEWCAYRGNIPYFETSA 163 (210)
Q Consensus 93 d~~~~~s~~~~-~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (210)
|++++.+|+.+ ..|+..+..... ++|+++||||+|+.+.. .+.+..+++..+++..+...++++||
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-----~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 155 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-----NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSS 155 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCC
Confidence 99999999998 689998876542 68999999999996531 13477889999999888446999999
Q ss_pred CCCCChHHHHHHHHHHHH
Q 028305 164 KEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~~~~ 181 (210)
++|.||+++|+.+++.+.
T Consensus 156 k~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 156 KTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred CcccCHHHHHHHHHHHHh
Confidence 999999999999998763
No 20
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-36 Score=197.02 Aligned_cols=170 Identities=38% Similarity=0.655 Sum_probs=158.4
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
.+..|||+++|..|+|||+|+++|..+-|++....+++.++..+.+.++++++++++|||+|+++|++++.+|++.++++
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
|++||++...+|+-+..|+.++..+... ++--|+|+||.|+.+. ++++...+++|+.... +.++++||++-.|
T Consensus 84 ilvydiscqpsfdclpewlreie~yan~----kvlkilvgnk~d~~dr--revp~qigeefs~~qd-myfletsakea~n 156 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPEWLREIEQYANN----KVLKILVGNKIDLADR--REVPQQIGEEFSEAQD-MYFLETSAKEADN 156 (213)
T ss_pred EEEEecccCcchhhhHHHHHHHHHHhhc----ceEEEeeccccchhhh--hhhhHHHHHHHHHhhh-hhhhhhcccchhh
Confidence 9999999999999999999999998765 6778999999999876 7899999999998866 8999999999999
Q ss_pred hHHHHHHHHHHHHhccc
Q 028305 169 IDEAFLCVAEIALKNEH 185 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~ 185 (210)
++.+|..++-++....+
T Consensus 157 ve~lf~~~a~rli~~ar 173 (213)
T KOG0095|consen 157 VEKLFLDLACRLISEAR 173 (213)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888766554
No 21
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-36 Score=195.71 Aligned_cols=169 Identities=35% Similarity=0.661 Sum_probs=157.8
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
+..+|++++|+..+|||||+.++.+..|...+..+.++++..+.+.-....+++++|||.|++.++.++..+++.++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 56789999999999999999999999999999999999998888877778899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
++||++|.++|..+..|...+..+... +.|+|+|+||||+.++ +.++.+.++.+++..| ..++++||+.+.|+
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw~----naqvilvgnKCDmd~e--Rvis~e~g~~l~~~LG-fefFEtSaK~NinV 171 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSWD----NAQVILVGNKCDMDSE--RVISHERGRQLADQLG-FEFFETSAKENINV 171 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeecc----CceEEEEecccCCccc--eeeeHHHHHHHHHHhC-hHHhhhcccccccH
Confidence 999999999999999999999777554 8899999999999877 9999999999999999 89999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 028305 170 DEAFLCVAEIALKNEH 185 (210)
Q Consensus 170 ~~~~~~l~~~~~~~~~ 185 (210)
+.+|+.++..+-+...
T Consensus 172 k~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 172 KQVFERLVDIICDKMS 187 (193)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998876543
No 22
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=3.2e-35 Score=210.07 Aligned_cols=190 Identities=34% Similarity=0.583 Sum_probs=156.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCC-cccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQ-QYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
+||+|+|++|+|||||+++|+++.+.. .+.++.+..+....+.+++..+.+.+||++|++.+......+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988874 5777777777777888889889999999999999988888889999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC--CcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 92 YDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGS--SRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
||++++.+++.+..|+..+..... ++|+++|+||+|+.+.. .+.+..+++..++...+ .+++++||++|.|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv 154 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEE-----HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-AQHFETSSKTGQNV 154 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCC-----CCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 999999999999889888865422 68999999999986432 23445567777777776 78999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCcceeccccccccccCC
Q 028305 170 DEAFLCVAEIALKNEHKDIYYQPQGISETVSEVEQRGGCAC 210 (210)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 210 (210)
+++|+++.+.+.+....+.... ........+.++.++| |
T Consensus 155 ~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~ 193 (193)
T cd04118 155 DELFQKVAEDFVSRANNQMNTE-KGVDLGQKKNSYFYSC-C 193 (193)
T ss_pred HHHHHHHHHHHHHhcccccCCC-CccccCCcCCCCCCCC-C
Confidence 9999999999988765543332 3333444566788999 7
No 23
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.8e-35 Score=207.96 Aligned_cols=164 Identities=23% Similarity=0.453 Sum_probs=144.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
.+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+...+++.+|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 37999999999999999999999999888888887665 45677888999999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC----------CCcccchHHHHHHHHHcCCCcEEE
Q 028305 92 YDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKIDTDGG----------SSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 92 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
||++++++|+.+ ..|+..+..... ++|+++|+||+|+.+. ..+.+..+++.++++..+...|++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~-----~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E 154 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCP-----NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLE 154 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCC-----CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEE
Confidence 999999999996 789988877643 6899999999999642 124578889999999998558999
Q ss_pred ecCCCCCC-hHHHHHHHHHHHH
Q 028305 161 TSAKEDCN-IDEAFLCVAEIAL 181 (210)
Q Consensus 161 ~Sa~~~~~-v~~~~~~l~~~~~ 181 (210)
+||++|.| ++++|..+++.++
T Consensus 155 ~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 155 CSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CccCcCCcCHHHHHHHHHHHHh
Confidence 99999995 9999999999765
No 24
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=8.2e-36 Score=212.38 Aligned_cols=188 Identities=29% Similarity=0.506 Sum_probs=151.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYD 93 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 93 (210)
||+++|.+|+|||||+++|..+.+...+.++.+..+ .....+++..+.+.+|||+|++++...+..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999888877777776544 3455678888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHH
Q 028305 94 VNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173 (210)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 173 (210)
++++.+++.+..|+..+...... ...++|+++|+||+|+... +.+..++...+++..+ ..++++||++|.|++++|
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilvgNK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDE-SAADVPIMIVGNKCDKVYE--REVSTEEGAALARRLG-CEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcc-cCCCCCEEEEEEChhcccc--CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHHH
Confidence 99999999999999888765431 1237899999999999654 4566667778888777 789999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCcceeccccccccccCC
Q 028305 174 LCVAEIALKNEHKDIYYQPQGISETVSEVEQRGGCAC 210 (210)
Q Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 210 (210)
+++++.+.+.+.... ++...+ ..++.|+.+|||
T Consensus 156 ~~l~~~l~~~~~~~~--~~~~~~--~~~~~~~~~~~~ 188 (190)
T cd04144 156 YTLVRALRQQRQGGQ--GPKGGP--TKKKEKKKRKCV 188 (190)
T ss_pred HHHHHHHHHhhcccC--CCcCCC--CCcccccccCce
Confidence 999998876655432 333333 345556666635
No 25
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=199.99 Aligned_cols=174 Identities=34% Similarity=0.628 Sum_probs=158.0
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEe-CCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQM-DDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
...|+++|+|+.-+|||+|++.|..+.++.-.+|+++.++....+.. .+..+++++|||+|+++|++++.+|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 36799999999999999999999999999999999999998777765 46679999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||++|.++|+.+..|..+...+.. ...++-+.+|++|+|+.+. +++..++++.++...+ +.++++|+++|.|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKsDL~Sq--RqVt~EEaEklAa~hg-M~FVETSak~g~N 160 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKSDLQSQ--RQVTAEEAEKLAASHG-MAFVETSAKNGCN 160 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcC--CCCeeEEEEeccccchhhh--ccccHHHHHHHHHhcC-ceEEEecccCCCc
Confidence 999999999999999999999887665 2225667899999999977 9999999999999999 9999999999999
Q ss_pred hHHHHHHHHHHHHhcccccc
Q 028305 169 IDEAFLCVAEIALKNEHKDI 188 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~~~~ 188 (210)
|+++|.-|.+.+.....+++
T Consensus 161 VeEAF~mlaqeIf~~i~qGe 180 (213)
T KOG0091|consen 161 VEEAFDMLAQEIFQAIQQGE 180 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCc
Confidence 99999999999988776633
No 26
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.7e-35 Score=205.60 Aligned_cols=164 Identities=35% Similarity=0.666 Sum_probs=146.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
.+||+++|++|+|||||+++|..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999998888878888788777778888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHH
Q 028305 92 YDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDE 171 (210)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (210)
||++++.+++.+..|+..+...... +.|+++|+||+|+.+. +....+++..+++..+ .+++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNP----NTVIFLIGNKADLEAQ--RDVTYEEAKQFADENG-LLFLECSAKTGENVED 154 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--cCcCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence 9999999999999999888665432 6799999999999765 5566778888888776 8999999999999999
Q ss_pred HHHHHHHHHHh
Q 028305 172 AFLCVAEIALK 182 (210)
Q Consensus 172 ~~~~l~~~~~~ 182 (210)
+|.++++.+.+
T Consensus 155 ~f~~l~~~~~~ 165 (166)
T cd04122 155 AFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 27
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.5e-35 Score=213.70 Aligned_cols=188 Identities=34% Similarity=0.550 Sum_probs=150.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|.+|+|||||+++|..+.+.. +.++.+.++..... ..+.+.+|||+|++.+..+...+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 46666655544332 4578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC-----------------CCcccchHHHHHHHHHcCC
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG-----------------SSRVVPQKKALEWCAYRGN 155 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~-----------------~~~~~~~~~~~~~~~~~~~ 155 (210)
|++++++|+.+..|+..+..... .++|+++|+||+|+.+. ..+.+..+++..+++..+.
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~----~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~ 151 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTAN----EDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINK 151 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCc
Confidence 99999999999988888766432 26899999999999651 1367888999999988763
Q ss_pred -------------CcEEEecCCCCCChHHHHHHHHHHHHhcccccccCCC--CCcceeccccccccccCC
Q 028305 156 -------------IPYFETSAKEDCNIDEAFLCVAEIALKNEHKDIYYQP--QGISETVSEVEQRGGCAC 210 (210)
Q Consensus 156 -------------~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~c~c 210 (210)
.+|+++||++|.||+++|..+++.++....++....+ +.-....+-+.+|++| |
T Consensus 152 ~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 220 (220)
T cd04126 152 YKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRSKSKC-C 220 (220)
T ss_pred cccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCcccCCCCC-C
Confidence 5799999999999999999999988765554433222 2222334556678999 7
No 28
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=3.6e-35 Score=209.07 Aligned_cols=166 Identities=25% Similarity=0.502 Sum_probs=143.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
..+||+++|+.|+|||||++++..+.|...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 358999999999999999999999999888888887655 3456678889999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC----------cccchHHHHHHHHHcCCCcEE
Q 028305 91 VYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS----------RVVPQKKALEWCAYRGNIPYF 159 (210)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 159 (210)
|||++++.+|+.+. .|...+..... ++|+++|+||.|+.+... +.+..+++..+++..+...++
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~-----~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 155 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCP-----NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYL 155 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEE
Confidence 99999999999996 57777765432 789999999999965421 235667888899888867899
Q ss_pred EecCCCCCChHHHHHHHHHHHHh
Q 028305 160 ETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 160 ~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
++||++|.|++++|+++++.+..
T Consensus 156 e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 156 ECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred EeCCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999998854
No 29
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=4.3e-35 Score=212.37 Aligned_cols=167 Identities=34% Similarity=0.506 Sum_probs=147.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCC-eEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDD-KLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+|||+|++.+..+...+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888889999888877777754 578999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHH
Q 028305 92 YDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDE 171 (210)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (210)
||++++++++.+..|+..+.+..... ..++|+++|+||+|+.+. +.+..++...+++..+ .+++++||++|.|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~-~~~~piilVgNK~DL~~~--~~v~~~~~~~~~~~~~-~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSS-ETQPLVVLVGNKTDLEHN--RTVKDDKHARFAQANG-MESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcccc-CCCceEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence 99999999999999999988764321 136789999999999754 5677788888888877 7899999999999999
Q ss_pred HHHHHHHHHHhc
Q 028305 172 AFLCVAEIALKN 183 (210)
Q Consensus 172 ~~~~l~~~~~~~ 183 (210)
+|++++..+...
T Consensus 157 lf~~l~~~l~~~ 168 (215)
T cd04109 157 LFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHhc
Confidence 999999998865
No 30
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.1e-34 Score=210.45 Aligned_cols=171 Identities=20% Similarity=0.404 Sum_probs=149.3
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
....+||+++|+.|+|||||+++|..+.|...+.++.+.++. ..+.+++..+.+.+|||+|++.+..+...+++++|++
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v 88 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 88 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence 346899999999999999999999999999888899876664 4578889999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC----------CCcccchHHHHHHHHHcCCCc
Q 028305 89 VLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKIDTDGG----------SSRVVPQKKALEWCAYRGNIP 157 (210)
Q Consensus 89 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~----------~~~~~~~~~~~~~~~~~~~~~ 157 (210)
|+|||++++.+|+.+ ..|+..+..... +.|+++|+||+|+.+. ..+.+..+++.++++..+...
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~ 163 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYCP-----STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEV 163 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCE
Confidence 999999999999984 789998876543 6799999999998642 125678889999999998447
Q ss_pred EEEecCCCCC-ChHHHHHHHHHHHHhccc
Q 028305 158 YFETSAKEDC-NIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 158 ~~~~Sa~~~~-~v~~~~~~l~~~~~~~~~ 185 (210)
|++|||++|. |++++|..++..+++...
T Consensus 164 ~~EtSAktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 164 YLECSAFTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred EEEccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence 9999999998 899999999999887533
No 31
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=8.8e-35 Score=203.18 Aligned_cols=165 Identities=41% Similarity=0.727 Sum_probs=146.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
..+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+......+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 57999999999999999999999999988888888888877778888888999999999999988888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|||+++++++..+..|+..+..... .++|+++|+||+|+.+. +....++...++...+ .+++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 154 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHAS----EDVERMLVGNKCDMEEK--RVVSKEEGEALADEYG-IKFLETSAKANINVE 154 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence 9999999999999999998877543 27899999999999764 4556677788888777 799999999999999
Q ss_pred HHHHHHHHHHHh
Q 028305 171 EAFLCVAEIALK 182 (210)
Q Consensus 171 ~~~~~l~~~~~~ 182 (210)
++|+++.+++..
T Consensus 155 ~~~~~i~~~~~~ 166 (167)
T cd01867 155 EAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 32
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=8.6e-35 Score=203.86 Aligned_cols=167 Identities=27% Similarity=0.479 Sum_probs=145.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999999877777776545 44567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHH
Q 028305 92 YDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDE 171 (210)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (210)
||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+. +.+..++...+++..+ .+++++||++|.|+++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~---~~~~piilvgNK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRL---TEDIPLVLVGNKVDLESQ--RQVTTEEGRNLAREFN-CPFFETSAALRHYIDD 154 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcC---CCCCCEEEEEEChhhhhc--CccCHHHHHHHHHHhC-CEEEEEecCCCCCHHH
Confidence 999999999999988887766432 127899999999999754 5677788888888877 7999999999999999
Q ss_pred HHHHHHHHHHhccc
Q 028305 172 AFLCVAEIALKNEH 185 (210)
Q Consensus 172 ~~~~l~~~~~~~~~ 185 (210)
+|++|++.+.+..+
T Consensus 155 ~f~~l~~~~~~~~~ 168 (172)
T cd04141 155 AFHGLVREIRRKES 168 (172)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887554
No 33
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=6.5e-35 Score=204.95 Aligned_cols=163 Identities=26% Similarity=0.461 Sum_probs=140.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
.+||+++|++|+|||||+++|..+.|...+.|+.+..+. ..+.+++..+.+.+|||+|++++...+..+++.+|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 479999999999999999999999998788888876664 4566788889999999999999998888899999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC----------CcccchHHHHHHHHHcCCCcEEE
Q 028305 92 YDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGS----------SRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 92 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
||++++++++.+. .|...+..... ++|+++|+||+|+.+.. .+.+..+++..+++..+...+++
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~-----~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e 154 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCP-----KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVE 154 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEE
Confidence 9999999999996 58777765432 68999999999986531 14567788888888887678999
Q ss_pred ecCCCCCChHHHHHHHHHHH
Q 028305 161 TSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~~ 180 (210)
+||++|.|++++|+.++.++
T Consensus 155 ~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 155 CSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred ecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999865
No 34
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=7.5e-35 Score=207.14 Aligned_cols=182 Identities=31% Similarity=0.528 Sum_probs=150.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD-DKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
+||+|+|++|+|||||+++|.++.+...+.++.+.++... +... +..+.+.+|||+|++++......+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 4899999999999999999999999888878877665443 4444 6778999999999999988888899999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC--CcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 92 YDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGS--SRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 92 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
||++++.+|+.+. .|+..+..... ++|+++|+||+|+.... .+.+..++...++...+..+++++||++|.|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCP-----GTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence 9999999999986 47776654422 78999999999986532 2345677888888888844899999999999
Q ss_pred hHHHHHHHHHHHHhcccccccCCCCCcceeccccccccccCC
Q 028305 169 IDEAFLCVAEIALKNEHKDIYYQPQGISETVSEVEQRGGCAC 210 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 210 (210)
++++|..+++.++....+. ..++..+++.|+|
T Consensus 155 v~~~f~~l~~~~~~~~~~~----------~~~~~~~~~~c~~ 186 (187)
T cd04132 155 VEEVFDTAIEEALKKEGKA----------IFKKKKKKRKCVV 186 (187)
T ss_pred HHHHHHHHHHHHHhhhhhh----------hhccCCCCccccc
Confidence 9999999999999887644 3456677777855
No 35
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.6e-34 Score=208.42 Aligned_cols=171 Identities=33% Similarity=0.620 Sum_probs=149.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEe-CCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQM-DDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
.+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+ ++..+.+.+|||+|++.+......+++.+|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999988777888888887777766 4667899999999999999888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|||++++++++.+..|+..+...... ..+|+++|+||+|+.+. ..+..++...+++..+ ..++++||++|.|++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~---~~~~iilvgNK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~~v~ 155 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQP---HRPVFILVGHKCDLESQ--RQVTREEAEKLAKDLG-MKYIETSARTGDNVE 155 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEccccccc--cccCHHHHHHHHHHhC-CEEEEEeCCCCCCHH
Confidence 99999999999999999988765432 25789999999999764 5667778888888887 899999999999999
Q ss_pred HHHHHHHHHHHhcccccc
Q 028305 171 EAFLCVAEIALKNEHKDI 188 (210)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~ 188 (210)
++|++|++.+++..+...
T Consensus 156 e~f~~l~~~~~~~~~~~~ 173 (211)
T cd04111 156 EAFELLTQEIYERIKRGE 173 (211)
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 999999999988766554
No 36
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=207.89 Aligned_cols=170 Identities=36% Similarity=0.645 Sum_probs=149.9
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
....+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45679999999999999999999999988877778888888777888888889999999999999988888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....+++..+++..+ .+++++||+++.|
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~----~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 155 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANA----NMTIMLIGNKCDLAHR--RAVSTEEGEQFAKEHG-LIFMEASAKTAQN 155 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECccCccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 9999999999999999998887665432 7899999999999754 4567788888888877 7999999999999
Q ss_pred hHHHHHHHHHHHHhccc
Q 028305 169 IDEAFLCVAEIALKNEH 185 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~ 185 (210)
++++|.++++.+++...
T Consensus 156 v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 156 VEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999987644
No 37
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=9.4e-35 Score=206.77 Aligned_cols=171 Identities=34% Similarity=0.593 Sum_probs=146.5
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++.+|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 3469999999999999999999999988777777776555 566778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
+|||++++++++.+..|+..+.+... ..++|+++|+||+|+.+. +.+..++...+++..+ .+++++||++|.|+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~~--~~i~~~~~~~~~~~~~-~~~~e~Sak~~~gi 155 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKD---KDRVPMILVGNKCDLDSE--RQVSTGEGQELAKSFG-IPFLETSAKQRVNV 155 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--cccCHHHHHHHHHHhC-CEEEEeeCCCCCCH
Confidence 99999999999999999998876532 227899999999998654 4455667777777766 78999999999999
Q ss_pred HHHHHHHHHHHHhccccc
Q 028305 170 DEAFLCVAEIALKNEHKD 187 (210)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~ 187 (210)
+++|++|++.+.+..+.+
T Consensus 156 ~~~~~~l~~~l~~~~~~~ 173 (189)
T PTZ00369 156 DEAFYELVREIRKYLKED 173 (189)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999998775544
No 38
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.4e-34 Score=201.55 Aligned_cols=168 Identities=53% Similarity=0.933 Sum_probs=148.3
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
+...+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++++..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45679999999999999999999999998877778888887777888889999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||++++++++.+..|...+..........++|+++|+||+|+.. +....+++.++++..+..+++++||++|.|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE---RQVSTEEAQAWCRENGDYPYFETSAKDATN 158 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc---cccCHHHHHHHHHHCCCCeEEEEECCCCCC
Confidence 99999999999999999999887765443335789999999999863 556778888888888766899999999999
Q ss_pred hHHHHHHHHHH
Q 028305 169 IDEAFLCVAEI 179 (210)
Q Consensus 169 v~~~~~~l~~~ 179 (210)
+.++|+.+++.
T Consensus 159 v~~~~~~~~~~ 169 (170)
T cd04116 159 VAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999865
No 39
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=2e-34 Score=200.13 Aligned_cols=160 Identities=36% Similarity=0.665 Sum_probs=143.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
++|+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++.+......+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888888887788888888899999999999999988899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|++++++|+.+..|+..+..... .++|+++|+||.|+... +.+..++...+++..+ .+++++||++|.|++++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~----~~~~iilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAP----EGVQKILIGNKADEEQK--RQVGDEQGNKLAKEYG-MDFFETSACTNSNIKES 153 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence 99999999999999998876542 26899999999999754 5566788888888877 89999999999999999
Q ss_pred HHHHHHH
Q 028305 173 FLCVAEI 179 (210)
Q Consensus 173 ~~~l~~~ 179 (210)
|.+|+++
T Consensus 154 f~~l~~~ 160 (161)
T cd04117 154 FTRLTEL 160 (161)
T ss_pred HHHHHhh
Confidence 9999865
No 40
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2.7e-34 Score=208.34 Aligned_cols=167 Identities=27% Similarity=0.596 Sum_probs=145.6
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
+...+||+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 47889999999999999999999999999888888988888877777788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
|+|||++++.+++.+..|+..+..... ++|+++|+||+|+... ....+++ .+++..+ ..|+++||++|.|
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~~-----~~piilvgNK~Dl~~~---~v~~~~~-~~~~~~~-~~~~e~SAk~~~~ 159 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKNR---QVKAKQV-TFHRKKN-LQYYEISAKSNYN 159 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEchhhhhc---cCCHHHH-HHHHhcC-CEEEEcCCCCCCC
Confidence 999999999999999999999886542 7899999999999642 2333444 5666555 8899999999999
Q ss_pred hHHHHHHHHHHHHhccc
Q 028305 169 IDEAFLCVAEIALKNEH 185 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~ 185 (210)
++++|++|++.+.+..+
T Consensus 160 i~~~f~~l~~~~~~~~~ 176 (219)
T PLN03071 160 FEKPFLYLARKLAGDPN 176 (219)
T ss_pred HHHHHHHHHHHHHcCcc
Confidence 99999999999987643
No 41
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=3.6e-34 Score=199.91 Aligned_cols=164 Identities=41% Similarity=0.745 Sum_probs=145.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+......+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999988877788888788777888888889999999999999998889999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHH
Q 028305 92 YDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDE 171 (210)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (210)
||+++++++..+..|+..+...... +.|+++|+||+|+... .....++...+++..+ .+++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~----~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLTDK--RVVDYSEAQEFADELG-IPFLETSAKNATNVEQ 154 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCC----CCcEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCcCHHH
Confidence 9999999999999999988765422 6899999999998654 4566677888888777 7999999999999999
Q ss_pred HHHHHHHHHHh
Q 028305 172 AFLCVAEIALK 182 (210)
Q Consensus 172 ~~~~l~~~~~~ 182 (210)
+|.++++.+.+
T Consensus 155 ~~~~i~~~~~~ 165 (166)
T cd01869 155 AFMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 42
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=5.9e-34 Score=198.61 Aligned_cols=162 Identities=36% Similarity=0.683 Sum_probs=141.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988777888877776667777778899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|++++++++.+..|+..+...... ++|+++|+||+|+.+. +....++...++...+ .+++++||++|.|++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~----~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l 154 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWD----NAQVILVGNKCDMEDE--RVVSSERGRQLADQLG-FEFFEASAKENINVKQV 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCCEEEEEECcccCcc--cccCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence 999999999999999988765432 6799999999999754 4455677777777776 78999999999999999
Q ss_pred HHHHHHHHH
Q 028305 173 FLCVAEIAL 181 (210)
Q Consensus 173 ~~~l~~~~~ 181 (210)
|++++..+.
T Consensus 155 ~~~l~~~~~ 163 (165)
T cd01865 155 FERLVDIIC 163 (165)
T ss_pred HHHHHHHHH
Confidence 999998764
No 43
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=5.5e-34 Score=199.43 Aligned_cols=165 Identities=36% Similarity=0.643 Sum_probs=143.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYD 93 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 93 (210)
||+++|++|+|||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++++..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998888999888887888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHH
Q 028305 94 VNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173 (210)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 173 (210)
++++++++.+..|+..+.+...+ ..+|+++|+||.|+.+........+++..+++..+ .+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~---~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDP---SSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-AEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEChhcCccccccccHHHHHHHHHHcC-CeEEEEECCCCCCHHHHH
Confidence 99999999999999988765332 15689999999998654223344566777777777 789999999999999999
Q ss_pred HHHHHHHHh
Q 028305 174 LCVAEIALK 182 (210)
Q Consensus 174 ~~l~~~~~~ 182 (210)
+.|++.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999998854
No 44
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=3.8e-34 Score=202.04 Aligned_cols=167 Identities=27% Similarity=0.449 Sum_probs=143.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|+.|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888899988888788888998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC---CcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGS---SRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
|++++.+++.+..|+..+...... .+| ++|+||+|+.... ......++...+++..+ .+++++||++|.|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~----~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SAk~g~~v 154 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKT----AIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCSTSHSINV 154 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCC----CCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999999999988765332 456 6889999995321 11223466777888777 78999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 028305 170 DEAFLCVAEIALKNEH 185 (210)
Q Consensus 170 ~~~~~~l~~~~~~~~~ 185 (210)
+++|+++++.+.....
T Consensus 155 ~~lf~~l~~~l~~~~~ 170 (182)
T cd04128 155 QKIFKIVLAKAFDLPL 170 (182)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999876544
No 45
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=4.2e-34 Score=202.11 Aligned_cols=167 Identities=40% Similarity=0.681 Sum_probs=144.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC----------CeEEEEEEEeCCCcccccccccc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD----------DKLVTLQIWDTAGQERFQSLGSA 80 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~ 80 (210)
+.+||+++|++|+|||||++++.++.+...+.++.+.++....+... +..+.+.+|||||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56999999999999999999999999988888888877766555543 45688999999999999999999
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 81 FYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 81 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
+++++|++++|||+++++++..+..|+..+..... ..++|+++|+||+|+.+. +....++...+++..+ +++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e 156 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY---CENPDIVLCGNKADLEDQ--RQVSEEQAKALADKYG-IPYFE 156 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEEeCccchhc--CccCHHHHHHHHHHcC-CeEEE
Confidence 99999999999999999999999999998876532 126799999999999764 5566778888888887 79999
Q ss_pred ecCCCCCChHHHHHHHHHHHHhc
Q 028305 161 TSAKEDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~~~~~ 183 (210)
+||++|.|++++|++|++.++++
T Consensus 157 ~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 157 TSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999988754
No 46
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.4e-34 Score=199.27 Aligned_cols=163 Identities=40% Similarity=0.672 Sum_probs=143.5
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
..+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+......+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 56999999999999999999999988887777787777777788888888899999999999998888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|||++++.+++.+..|+..+..... .++|+++|+||+|+... +....+++..+++..+...++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 155 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGA----SNVVLLLIGNKCDLEEQ--REVLFEEACTLAEKNGMLAVLETSAKESQNVE 155 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcCCcEEEEEECCCCCCHH
Confidence 9999999999999999999876533 27899999999999754 45666778888888776689999999999999
Q ss_pred HHHHHHHHH
Q 028305 171 EAFLCVAEI 179 (210)
Q Consensus 171 ~~~~~l~~~ 179 (210)
++|+++.+.
T Consensus 156 ~~~~~l~~~ 164 (165)
T cd01864 156 EAFLLMATE 164 (165)
T ss_pred HHHHHHHHh
Confidence 999999875
No 47
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=7.2e-34 Score=205.13 Aligned_cols=167 Identities=22% Similarity=0.467 Sum_probs=143.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+|+|++|+|||||+++|..+.|...+.|+.+..+. ..+.+++..+.+.+|||+|++.+..+...+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999999888888876654 56778899999999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC----------CcccchHHHHHHHHHcCCCcEEEe
Q 028305 93 DVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGS----------SRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
|++++++|+.+. .|...+..... ++|++||+||+|+.... ...+..+++..+++..+...|+++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~-----~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~ 155 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCP-----NAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVEC 155 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEc
Confidence 999999999985 56555544332 78999999999996531 123677889999999997799999
Q ss_pred cCCCCCC-hHHHHHHHHHHHHhccc
Q 028305 162 SAKEDCN-IDEAFLCVAEIALKNEH 185 (210)
Q Consensus 162 Sa~~~~~-v~~~~~~l~~~~~~~~~ 185 (210)
||+++.+ |+++|..++.+++....
T Consensus 156 SAk~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 156 SSRSSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CCCcCCcCHHHHHHHHHHHHHhccC
Confidence 9999885 99999999999877544
No 48
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=7e-34 Score=198.68 Aligned_cols=166 Identities=32% Similarity=0.620 Sum_probs=145.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888899988888888888888999999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCC-CCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADP-GEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDE 171 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~-~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (210)
|++++.+++.+..|+..+...... ....++|+++|+||+|+.+. .....++...+++..+ .+++++||++|.|+++
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH--RAVSEDEGRLWAESKG-FKYFETSACTGEGVNE 157 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc--cccCHHHHHHHHHHcC-CeEEEEECCCCCCHHH
Confidence 999999999999999999876532 11236899999999999743 4556777777777777 8899999999999999
Q ss_pred HHHHHHHHHH
Q 028305 172 AFLCVAEIAL 181 (210)
Q Consensus 172 ~~~~l~~~~~ 181 (210)
+|++|++.++
T Consensus 158 l~~~l~~~l~ 167 (168)
T cd04119 158 MFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 49
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=5.4e-34 Score=198.24 Aligned_cols=161 Identities=44% Similarity=0.753 Sum_probs=150.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYD 93 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 93 (210)
||+|+|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|++.+......+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999998999998889999999999999999999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHH
Q 028305 94 VNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173 (210)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 173 (210)
++++.+++.+..|+..+...... ++|+++|+||.|+.+. +.+..++++.+++..+ .+|+++|++++.|+.++|
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~----~~~iivvg~K~D~~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f 153 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPE----DIPIIVVGNKSDLSDE--REVSVEEAQEFAKELG-VPYFEVSAKNGENVKEIF 153 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTT----TSEEEEEEETTTGGGG--SSSCHHHHHHHHHHTT-SEEEEEBTTTTTTHHHHH
T ss_pred ccccccccccccccccccccccc----cccceeeecccccccc--ccchhhHHHHHHHHhC-CEEEEEECCCCCCHHHHH
Confidence 99999999999999999888762 6899999999999863 6788889999999999 999999999999999999
Q ss_pred HHHHHHHH
Q 028305 174 LCVAEIAL 181 (210)
Q Consensus 174 ~~l~~~~~ 181 (210)
..+++.++
T Consensus 154 ~~~i~~i~ 161 (162)
T PF00071_consen 154 QELIRKIL 161 (162)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
No 50
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=8.5e-34 Score=197.85 Aligned_cols=163 Identities=40% Similarity=0.732 Sum_probs=145.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
..+||+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||+..+..+...+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999999999887888888888888888888888899999999999998888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|||++++.+++.+..|+..+...... ++|+++|+||+|+... +....++...++...+ ..++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~pi~vv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 154 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADS----NIVIMLVGNKSDLRHL--RAVPTEEAKAFAEKNG-LSFIETSALDGTNVE 154 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHH
Confidence 99999999999999999988776542 6899999999999754 5566777888887765 889999999999999
Q ss_pred HHHHHHHHHH
Q 028305 171 EAFLCVAEIA 180 (210)
Q Consensus 171 ~~~~~l~~~~ 180 (210)
++|++++..+
T Consensus 155 ~l~~~l~~~i 164 (165)
T cd01868 155 EAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 51
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=1e-33 Score=198.67 Aligned_cols=161 Identities=27% Similarity=0.483 Sum_probs=138.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||++++..+.+...+.++... .....+..++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999999999998888787754 33455667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC----------CcccchHHHHHHHHHcCCCcEEEe
Q 028305 93 DVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGS----------SRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
|++++++|+.+. .|+..+..... ++|+++|+||+|+.+.. .+.+..+++..+++..+...++++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~-----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 155 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 155 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999986 57777765432 78999999999996431 135778888999998886799999
Q ss_pred cCCCCCChHHHHHHHHHH
Q 028305 162 SAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~ 179 (210)
||++|.|++++|+.+++.
T Consensus 156 Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 156 SALTQKGLKTVFDEAIRA 173 (174)
T ss_pred cccccCCHHHHHHHHHHh
Confidence 999999999999999864
No 52
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1e-33 Score=197.02 Aligned_cols=161 Identities=38% Similarity=0.639 Sum_probs=138.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||++++..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888777777665 444566778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|++++.+++.+..|+..+...... .++|+++|+||+|+.+. +....++...+++..+ .+++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDT---ENVPMVLVGNKCDLEDE--RVVSREEGQALARQWG-CPFYETSAKSKINVDEV 154 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--ceecHHHHHHHHHHcC-CeEEEecCCCCCCHHHH
Confidence 999999999999998888765332 37899999999999653 4556667777777777 89999999999999999
Q ss_pred HHHHHHHH
Q 028305 173 FLCVAEIA 180 (210)
Q Consensus 173 ~~~l~~~~ 180 (210)
|+++++.+
T Consensus 155 ~~~l~~~~ 162 (163)
T cd04136 155 FADLVRQI 162 (163)
T ss_pred HHHHHHhc
Confidence 99998764
No 53
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.8e-33 Score=200.18 Aligned_cols=166 Identities=31% Similarity=0.528 Sum_probs=140.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYD 93 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 93 (210)
||+++|++|+|||||+++|..+.+...+.++.+..+. ..+..++..+.+.+|||+|++.+..++..+++.+|++|+|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 8999999999999999999999998777777766553 455677888999999999999998888889999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC----------cccchHHHHHHHHHcCCCcEEEec
Q 028305 94 VNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS----------RVVPQKKALEWCAYRGNIPYFETS 162 (210)
Q Consensus 94 ~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~S 162 (210)
++++.+|+.+. .|+..+..... ++|+++|+||+|+..... ..+..+++..++...+...++++|
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~-----~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 155 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCP-----GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECS 155 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 99999999986 58877765432 789999999999965421 124566777888777767899999
Q ss_pred CCCCCChHHHHHHHHHHHHhccc
Q 028305 163 AKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 163 a~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
|++|.|++++|.++++.+....+
T Consensus 156 Ak~~~~v~e~f~~l~~~~~~~~~ 178 (189)
T cd04134 156 AKLNRGVNEAFTEAARVALNVRP 178 (189)
T ss_pred CCcCCCHHHHHHHHHHHHhcccc
Confidence 99999999999999999986544
No 54
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=2.3e-33 Score=195.63 Aligned_cols=161 Identities=31% Similarity=0.690 Sum_probs=138.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||+|++.+......++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888788888888877777777888899999999999998888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|++++.++..+..|+..+.+... ++|+++|+||+|+.+. ... .+...+++.. ...++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-----~~piiiv~nK~Dl~~~---~~~-~~~~~~~~~~-~~~~~e~Sa~~~~~v~~~ 150 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-----NIPIVLCGNKVDIKDR---KVK-AKQITFHRKK-NLQYYEISAKSNYNFEKP 150 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEchhcccc---cCC-HHHHHHHHHc-CCEEEEEeCCCCCChHHH
Confidence 99999999999999999987654 7899999999999742 222 2334455544 488999999999999999
Q ss_pred HHHHHHHHHhc
Q 028305 173 FLCVAEIALKN 183 (210)
Q Consensus 173 ~~~l~~~~~~~ 183 (210)
|++|++.+.+.
T Consensus 151 f~~l~~~~~~~ 161 (166)
T cd00877 151 FLWLARKLLGN 161 (166)
T ss_pred HHHHHHHHHhc
Confidence 99999998754
No 55
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=3.1e-33 Score=195.53 Aligned_cols=166 Identities=37% Similarity=0.668 Sum_probs=146.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...+||+++|++|+|||||++++.+..+...+.++.+.++....+..++....+.+||++|++++......+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 35689999999999999999999999888777778778887777888888889999999999998888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
+|||++++.+++.+..|+..+.....+ ++|+++|+||.|+.+. .....++.+.++...+ ..++++||+++.|+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i 154 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNS----NMTIMLIGNKCDLESR--REVSYEEGEAFAKEHG-LIFMETSAKTASNV 154 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999999999999988776432 7899999999999754 4566777888888776 88999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028305 170 DEAFLCVAEIALK 182 (210)
Q Consensus 170 ~~~~~~l~~~~~~ 182 (210)
+++|.++++.+++
T Consensus 155 ~~~~~~~~~~~~~ 167 (168)
T cd01866 155 EEAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 56
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-34 Score=183.35 Aligned_cols=196 Identities=33% Similarity=0.613 Sum_probs=174.8
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
.....||.+++|+-|+|||+|++.|....|...-+.+++..+....+.+.+.++++++|||.|+++|+....+|++.+.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 45678999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
.++|||++...++..+..|+......-.+ +..+++++||.|+... +++..++.+.|+...+ .-++++|+++|.
T Consensus 87 almvyditrrstynhlsswl~dar~ltnp----nt~i~lignkadle~q--rdv~yeeak~faeeng-l~fle~saktg~ 159 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIFLIGNKADLESQ--RDVTYEEAKEFAEENG-LMFLEASAKTGQ 159 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCC----ceEEEEecchhhhhhc--ccCcHHHHHHHHhhcC-eEEEEecccccC
Confidence 99999999999999999999888766554 6678999999999877 8999999999999999 999999999999
Q ss_pred ChHHHHHHHHHHHHhccccccc-------------CCCCCcceeccccccccccCC
Q 028305 168 NIDEAFLCVAEIALKNEHKDIY-------------YQPQGISETVSEVEQRGGCAC 210 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~c~c 210 (210)
|+++.|-.....++++...... ..|+.-....+...++-+|.|
T Consensus 160 nvedafle~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c 215 (215)
T KOG0097|consen 160 NVEDAFLETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC 215 (215)
T ss_pred cHHHHHHHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence 9999999999999887665433 233334445677788899998
No 57
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=3.7e-33 Score=193.81 Aligned_cols=160 Identities=30% Similarity=0.608 Sum_probs=138.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||++++..+.+.+.+.++.+.+.......+++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988777777776776777778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|++++.+++.+..|+..+..... ++|+++|+||+|+... ..++...++...+ .+++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-----~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l 149 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-----EIPCIVVANKIDLDPS-----VTQKKFNFAEKHN-LPLYYVSAADGTNVVKL 149 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEECccCchh-----HHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 99999999999999998876532 6799999999998532 1234455666555 78999999999999999
Q ss_pred HHHHHHHHHhc
Q 028305 173 FLCVAEIALKN 183 (210)
Q Consensus 173 ~~~l~~~~~~~ 183 (210)
|+.+++.++++
T Consensus 150 ~~~l~~~~~~~ 160 (161)
T cd04124 150 FQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHHhc
Confidence 99999998875
No 58
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.3e-33 Score=195.43 Aligned_cols=163 Identities=35% Similarity=0.600 Sum_probs=139.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999998888777777776544 45677788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHH
Q 028305 92 YDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDE 171 (210)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (210)
||++++.+++.+..|+..+..... ..++|+++|+||+|+.+. .....++...+++..+ .+++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 153 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKD---TEDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWG-CAFLETSAKAKINVNE 153 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECCcchhc--cEEcHHHHHHHHHHhC-CEEEEeeCCCCCCHHH
Confidence 999999999999999888876532 237899999999999764 4455566677777777 7999999999999999
Q ss_pred HHHHHHHHHH
Q 028305 172 AFLCVAEIAL 181 (210)
Q Consensus 172 ~~~~l~~~~~ 181 (210)
+|.++++.+.
T Consensus 154 ~~~~l~~~l~ 163 (164)
T cd04175 154 IFYDLVRQIN 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999997654
No 59
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.5e-33 Score=194.90 Aligned_cols=159 Identities=38% Similarity=0.725 Sum_probs=139.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC--CeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD--DKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+. +..+.+.+|||||++++...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999998887888888888776666666 777899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|||++++++++.+..|+..+..... ++|+++|+||+|+... ..+..+++..+++..+ .+++++|+++|.|++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 152 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-----DIPMVLVQTKIDLLDQ--AVITNEEAEALAKRLQ-LPLFRTSVKDDFNVT 152 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCCCHH
Confidence 9999999999999999888866443 7899999999999754 4455677888888877 799999999999999
Q ss_pred HHHHHHHHH
Q 028305 171 EAFLCVAEI 179 (210)
Q Consensus 171 ~~~~~l~~~ 179 (210)
++|++|.+.
T Consensus 153 ~l~~~l~~~ 161 (162)
T cd04106 153 ELFEYLAEK 161 (162)
T ss_pred HHHHHHHHh
Confidence 999999764
No 60
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=6.8e-33 Score=194.49 Aligned_cols=170 Identities=72% Similarity=1.140 Sum_probs=148.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|||||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888777778777777777888888899999999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|++++.+++.+..|...+..........++|+++|+||+|+... .....++...+.+..+..+++++|+++|.|++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK--RQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc--cccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence 99999999999889888777665444557899999999999753 4455667777777777689999999999999999
Q ss_pred HHHHHHHHHhcc
Q 028305 173 FLCVAEIALKNE 184 (210)
Q Consensus 173 ~~~l~~~~~~~~ 184 (210)
|+++.+++.+..
T Consensus 159 ~~~i~~~~~~~~ 170 (172)
T cd01862 159 FETIARKALEQE 170 (172)
T ss_pred HHHHHHHHHhcc
Confidence 999999998774
No 61
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=3.6e-33 Score=193.89 Aligned_cols=160 Identities=41% Similarity=0.678 Sum_probs=143.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888887778888888899999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|+++++++..+..|+..+.....+ ++|+++|+||+|+.+. .....+++..++...+ ..++++||+++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~----~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASP----NIVVILVGNKSDLADQ--REVTFLEASRFAQENG-LLFLETSALTGENVEEA 153 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEEchhcchh--ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence 999999999999998888665433 7899999999999763 5567778888888887 89999999999999999
Q ss_pred HHHHHHH
Q 028305 173 FLCVAEI 179 (210)
Q Consensus 173 ~~~l~~~ 179 (210)
|+++++.
T Consensus 154 ~~~~~~~ 160 (161)
T cd04113 154 FLKCARS 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 62
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1e-32 Score=192.15 Aligned_cols=163 Identities=50% Similarity=0.845 Sum_probs=144.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888788888888887788888888889999999999999988899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|++++.+++.+..|+..+..+... ++|+++|+||+|+... .....+.+..+++..+ .+++++|+++|.|++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~----~~pivvv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~l 153 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADP----NVVIMLVGNKSDLEDQ--RQVSREEAEAFAEEHG-LPFFETSAKTNTNVEEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEEchhcccc--cCCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 999999999999999988776533 7899999999998753 4556677777887776 78999999999999999
Q ss_pred HHHHHHHHHh
Q 028305 173 FLCVAEIALK 182 (210)
Q Consensus 173 ~~~l~~~~~~ 182 (210)
|+++.+.+.+
T Consensus 154 ~~~i~~~~~~ 163 (164)
T smart00175 154 FEELAREILK 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 63
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.1e-32 Score=196.49 Aligned_cols=156 Identities=28% Similarity=0.656 Sum_probs=137.4
Q ss_pred EcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCCh
Q 028305 18 LGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQ 97 (210)
Q Consensus 18 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~ 97 (210)
+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888888988888888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHH
Q 028305 98 KTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177 (210)
Q Consensus 98 ~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 177 (210)
.+++.+..|+..+.+... ++|+++|+||+|+... .+..+. ..+++..+ +.++++||++|.|+.++|++|+
T Consensus 81 ~S~~~i~~w~~~i~~~~~-----~~piilvgNK~Dl~~~---~v~~~~-~~~~~~~~-~~~~e~SAk~~~~v~~~F~~l~ 150 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDVKDR---KVKAKS-ITFHRKKN-LQYYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccc---cCCHHH-HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999987642 7899999999998642 233333 35666655 8999999999999999999999
Q ss_pred HHHHhc
Q 028305 178 EIALKN 183 (210)
Q Consensus 178 ~~~~~~ 183 (210)
..+.+.
T Consensus 151 ~~i~~~ 156 (200)
T smart00176 151 RKLIGD 156 (200)
T ss_pred HHHHhc
Confidence 999775
No 64
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=9.1e-33 Score=192.46 Aligned_cols=162 Identities=37% Similarity=0.640 Sum_probs=138.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+|+|++|||||||+++|++..+...+.++.+. ........++..+.+.+|||||++++...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999998887776666653 33456677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|++++++++.+..|+..+.+.... .+.|+++|+||+|+... +....++...+++..+ .+++++||++|.|++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~---~~~pii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDR---DDVPIVLVGNKCDLESE--RVVSTEEGKELARQWG-CPFLETSAKERVNVDEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--ceEcHHHHHHHHHHcC-CEEEEeecCCCCCHHHH
Confidence 999999999999998888765432 26799999999999754 4556677777887777 89999999999999999
Q ss_pred HHHHHHHHH
Q 028305 173 FLCVAEIAL 181 (210)
Q Consensus 173 ~~~l~~~~~ 181 (210)
|++|++.+.
T Consensus 154 ~~~l~~~~~ 162 (164)
T smart00173 154 FYDLVREIR 162 (164)
T ss_pred HHHHHHHHh
Confidence 999998764
No 65
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=7e-33 Score=191.35 Aligned_cols=157 Identities=24% Similarity=0.422 Sum_probs=130.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|+.|+|||||+++++.+.+...+.++ ...+ ...+.+++..+.+.+|||+|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 48999999999999999999988887655443 2333 46678888889999999999864 34567899999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|++++.+|+++..|+..+..... ..++|+++|+||.|+.....+.+..+++.++++..+...|++|||++|.|++++
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~---~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~ 150 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRN---ISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERV 150 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHH
Confidence 99999999999999998876542 126899999999998644447788888888988776689999999999999999
Q ss_pred HHHHHHH
Q 028305 173 FLCVAEI 179 (210)
Q Consensus 173 ~~~l~~~ 179 (210)
|..+++.
T Consensus 151 f~~~~~~ 157 (158)
T cd04103 151 FQEAAQK 157 (158)
T ss_pred HHHHHhh
Confidence 9999864
No 66
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=9.2e-33 Score=197.23 Aligned_cols=171 Identities=24% Similarity=0.363 Sum_probs=138.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc--------ccccccC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL--------GSAFYRG 84 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 84 (210)
+||+|+|.+|+|||||+++|.++.+...+.|+.+.+.....+..++..+.+.+|||||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998878888877766667778888899999999996543211 2234688
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCC
Q 028305 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK 164 (210)
Q Consensus 85 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (210)
+|++|+|||++++++++.+..|+..+...... ...++|+++|+||+|+... +....+++..++.+...++++++||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~-~~~~~piiivgNK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPA-GNKEPPIVVVGNKRDQQRH--RFAPRHVLSVLVRKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhccc-CCCCCCEEEEEECcccccc--ccccHHHHHHHHHHhcCCcEEEecCC
Confidence 99999999999999999999998888765421 1237899999999999654 44555666666554444899999999
Q ss_pred CCCChHHHHHHHHHHHHhcccc
Q 028305 165 EDCNIDEAFLCVAEIALKNEHK 186 (210)
Q Consensus 165 ~~~~v~~~~~~l~~~~~~~~~~ 186 (210)
+|.|++++|+.++..++.+-+.
T Consensus 158 ~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 158 YNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCCCHHHHHHHHHHHhhccCCC
Confidence 9999999999999998877653
No 67
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.4e-32 Score=190.93 Aligned_cols=161 Identities=34% Similarity=0.609 Sum_probs=137.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
.+||+++|++|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+|||+|++++..++..+++.+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999888777777765444 55567788888899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHH
Q 028305 92 YDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDE 171 (210)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (210)
||++++.+++.+..|+..+.+.... .++|+++|+||+|+.+ +....++...++...+ .+++++||++|.|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~---~~~piivv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDS---DDVPMVLVGNKCDLAA---RTVSSRQGQDLAKSYG-IPYIETSAKTRQGVEE 152 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccccc---ceecHHHHHHHHHHhC-CeEEEecCCCCCCHHH
Confidence 9999999999999998888765422 2789999999999975 3455667777777766 7899999999999999
Q ss_pred HHHHHHHHH
Q 028305 172 AFLCVAEIA 180 (210)
Q Consensus 172 ~~~~l~~~~ 180 (210)
+|+++++.+
T Consensus 153 l~~~l~~~~ 161 (162)
T cd04138 153 AFYTLVREI 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998754
No 68
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.1e-32 Score=191.92 Aligned_cols=162 Identities=33% Similarity=0.576 Sum_probs=137.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
.+||+++|.+|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999988877666654 45556777788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHH
Q 028305 92 YDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDE 171 (210)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (210)
||++++.++..+..|+..+...... .++|+++|+||+|+... .....++...++...+ .+++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piviv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 153 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGY---EKVPIILVGNKVDLESE--REVSSAEGRALAEEWG-CPFMETSAKSKTMVNE 153 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccchhc--CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHH
Confidence 9999999999999998888765321 27899999999998653 3445556677777666 7899999999999999
Q ss_pred HHHHHHHHH
Q 028305 172 AFLCVAEIA 180 (210)
Q Consensus 172 ~~~~l~~~~ 180 (210)
+|.++++.+
T Consensus 154 l~~~l~~~l 162 (163)
T cd04176 154 LFAEIVRQM 162 (163)
T ss_pred HHHHHHHhc
Confidence 999998754
No 69
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.9e-32 Score=191.87 Aligned_cols=163 Identities=38% Similarity=0.686 Sum_probs=142.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc-ccccccccCCcEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ-SLGSAFYRGADCCVL 90 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~vi~ 90 (210)
.++|+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++++. .+...+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999998887788888888888888888988999999999998886 467888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCC---CC
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKE---DC 167 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~ 167 (210)
|||++++.++..+..|...+...... .++|+++|+||+|+... +.+..++...++.... .+++++||++ +.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~~~ 155 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLP---NEVPRILVGNKCDLREQ--IQVPTDLAQRFADAHS-MPLFETSAKDPSEND 155 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCC---CCCCEEEEEECccchhh--cCCCHHHHHHHHHHcC-CcEEEEeccCCcCCC
Confidence 99999999999999999888765432 27899999999998754 5566777888888776 8999999999 99
Q ss_pred ChHHHHHHHHHHH
Q 028305 168 NIDEAFLCVAEIA 180 (210)
Q Consensus 168 ~v~~~~~~l~~~~ 180 (210)
|++++|..+++.+
T Consensus 156 ~i~~~f~~l~~~~ 168 (170)
T cd04115 156 HVEAIFMTLAHKL 168 (170)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 70
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=4.3e-32 Score=196.25 Aligned_cols=169 Identities=36% Similarity=0.624 Sum_probs=141.1
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
....+||+|+|++|+|||||+++|.+..+. .+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 456899999999999999999999988774 5567777777777777888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHH-HHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 89 VLVYDVNVQKTFESLQN-WREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
++|||++++++|..+.. |...+..... ..+.|+++|+||+|+... +....++...++...+ ..++++||++|.
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~---~~~~~~ilv~NK~Dl~~~--~~i~~~~~~~~~~~~~-~~~~e~SAk~~~ 163 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYST---NQDCVKMLVGNKVDRESE--RDVSREEGMALAKEHG-CLFLECSAKTRE 163 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--CccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 99999999999999876 4444433221 126799999999999754 4455667777777776 789999999999
Q ss_pred ChHHHHHHHHHHHHhcc
Q 028305 168 NIDEAFLCVAEIALKNE 184 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~~ 184 (210)
|++++|++|.+.+....
T Consensus 164 ~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 164 NVEQCFEELALKIMEVP 180 (211)
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 99999999999997764
No 71
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.7e-32 Score=190.45 Aligned_cols=160 Identities=38% Similarity=0.661 Sum_probs=141.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|||||||+++|++..+...+.++.+.++....+..++..+.+.+|||||+..+......+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888888888888888888889999999999999988899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|++++++++.+..|+..+...... +.|+++|+||+|+.+. .....++...++...+ ..++++|++++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l 153 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGN----DVIIVLVGNKTDLSDK--RQVSTEEGEKKAKELN-AMFIETSAKAGHNVKEL 153 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCC----CCEEEEEEEChhcccc--CccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHHH
Confidence 999999999999999888654332 6899999999999643 5566677777777776 88999999999999999
Q ss_pred HHHHHHH
Q 028305 173 FLCVAEI 179 (210)
Q Consensus 173 ~~~l~~~ 179 (210)
|+++.+.
T Consensus 154 ~~~i~~~ 160 (161)
T cd01861 154 FRKIASA 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 72
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=3e-32 Score=189.79 Aligned_cols=162 Identities=33% Similarity=0.597 Sum_probs=137.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
.+||+++|++|+|||||+++++++.+...+.++.+..+ .....+++..+.+.+|||||++++..+...+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 58999999999999999999998887766666665444 44556788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHH
Q 028305 92 YDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDE 171 (210)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (210)
||++++.+++.+..|+..+.+.... .++|+++|+||+|+... .....++...+++..+ .+++++||++|.|+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piiiv~NK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDR---DEFPMILVGNKADLEHQ--RKVSREEGQELARKLK-IPYIETSAKDRLNVDK 154 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC---CCCCEEEEeeCcccccc--ceecHHHHHHHHHHcC-CcEEEeeCCCCCCHHH
Confidence 9999999999999999888765321 26899999999999754 4455667778887777 7999999999999999
Q ss_pred HHHHHHHHH
Q 028305 172 AFLCVAEIA 180 (210)
Q Consensus 172 ~~~~l~~~~ 180 (210)
+|++|+..+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04145 155 AFHDLVRVI 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998754
No 73
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=3.3e-32 Score=189.80 Aligned_cols=162 Identities=28% Similarity=0.459 Sum_probs=135.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||++++.++.+...+.++.+..+ ......+...+.+.+|||+|++.+..+...+++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777665444 445556677789999999999999888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|++++++++.+..|+..+...... ...++|+++|+||+|+.+. +....++...++...+ ..++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGN-NIEKIPIMLVGNKCDESHK--REVSSNEGAACATEWN-CAFMETSAKTNHNVQEL 156 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcC-CCCCCCEEEEEECcccccc--CeecHHHHHHHHHHhC-CcEEEeecCCCCCHHHH
Confidence 999999999999998877665322 1237899999999999653 4566667777777766 78999999999999999
Q ss_pred HHHHHHH
Q 028305 173 FLCVAEI 179 (210)
Q Consensus 173 ~~~l~~~ 179 (210)
|++|+..
T Consensus 157 f~~l~~~ 163 (165)
T cd04140 157 FQELLNL 163 (165)
T ss_pred HHHHHhc
Confidence 9999753
No 74
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=4.3e-32 Score=190.60 Aligned_cols=161 Identities=31% Similarity=0.483 Sum_probs=137.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||++++.++.+...+.++. .+.......+++..+.+.+|||||++.+...+..+++.+|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988887777665 4455566778888899999999999999999889999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC----------CcccchHHHHHHHHHcCCCcEEEe
Q 028305 93 DVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGS----------SRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
|++++.+|+.+. .|+..+..... ++|+++|+||+|+.... .+.+..+++..+++..+...++++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 154 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNP-----KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIEC 154 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEE
Confidence 999999999885 68777765322 68999999999986431 356777888999998885589999
Q ss_pred cCCCCCChHHHHHHHHHH
Q 028305 162 SAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~ 179 (210)
||++|.|++++|+.++-+
T Consensus 155 Sa~~~~~v~~lf~~~~~~ 172 (173)
T cd04130 155 SALTQKNLKEVFDTAILA 172 (173)
T ss_pred eCCCCCCHHHHHHHHHhh
Confidence 999999999999988753
No 75
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.2e-32 Score=191.21 Aligned_cols=165 Identities=24% Similarity=0.324 Sum_probs=138.5
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
...+||+++|++|+|||||+++|+++.+. ..+.++.+.++....+.+++..+.+.+||++|++.+......+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46899999999999999999999999988 77888888777777778888888999999999999988888889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||++++.+++.+..|+..+... .++|+++|+||+|+.+. ......+...+++..+...++++||++|.|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~------~~~p~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML------GEIPCLFVAAKADLDEQ--QQRYEVQPDEFCRKLGLPPPLHFSSKLGDS 153 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC------CCCeEEEEEEccccccc--ccccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence 9999999999999888887765321 26899999999999643 223334455666766644579999999999
Q ss_pred hHHHHHHHHHHHHh
Q 028305 169 IDEAFLCVAEIALK 182 (210)
Q Consensus 169 v~~~~~~l~~~~~~ 182 (210)
++++|+.+++.+..
T Consensus 154 v~~lf~~l~~~~~~ 167 (169)
T cd01892 154 SNELFTKLATAAQY 167 (169)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998763
No 76
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=4.1e-32 Score=190.95 Aligned_cols=162 Identities=29% Similarity=0.535 Sum_probs=137.9
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEEC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDV 94 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~ 94 (210)
|+|+|++|+|||||+++|..+.+...+.++....+ ...+..++..+.+.+|||||++.+..+...+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999998877777765444 45567788889999999999999998889999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC----------CcccchHHHHHHHHHcCCCcEEEecC
Q 028305 95 NVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGS----------SRVVPQKKALEWCAYRGNIPYFETSA 163 (210)
Q Consensus 95 ~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (210)
+++++|+.+. .|+..+..... ++|+++|+||+|+.... ...+..+++..+++..+...++++||
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 154 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-----NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSA 154 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecC
Confidence 9999999986 58887766532 78999999999996531 12366778888999888668999999
Q ss_pred CCCCChHHHHHHHHHHHHh
Q 028305 164 KEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~~~~~ 182 (210)
++|.|++++|+.+++.+++
T Consensus 155 ~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 155 LTQEGVREVFEEAIRAALN 173 (174)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 9999999999999998754
No 77
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=4.1e-32 Score=199.49 Aligned_cols=167 Identities=31% Similarity=0.502 Sum_probs=139.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||+++|+.+.+...+.++.+ ++....+.+++..+.+.+|||+|++.+..+...++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998877777775 555667788888899999999999988888787889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCC-----CCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 93 DVNVQKTFESLQNWREEFLKQADP-----GEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~-----~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
|++++++|+.+..|+..+...... ....++|+++|+||+|+... +.+..+++..++.......++++||++|.
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~--~~v~~~ei~~~~~~~~~~~~~evSAktg~ 157 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP--REVQRDEVEQLVGGDENCAYFEVSAKKNS 157 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc--cccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence 999999999999998888764211 12237899999999999753 45666777777665444789999999999
Q ss_pred ChHHHHHHHHHHHHh
Q 028305 168 NIDEAFLCVAEIALK 182 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~ 182 (210)
|++++|++|++.+..
T Consensus 158 gI~elf~~L~~~~~~ 172 (247)
T cd04143 158 NLDEMFRALFSLAKL 172 (247)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999987643
No 78
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.1e-33 Score=183.14 Aligned_cols=170 Identities=36% Similarity=0.635 Sum_probs=158.2
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
+...||++++|.-=+|||||+-|++.+.|......+....+..+.+++.+....+.||||+|+++|..+-+.|++.++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 45689999999999999999999999999988888888888888889989999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||+++.+||+.+..|..++..+... .+-+++|+||+|+.++ +.+..++....++..+ ..|+++||+++.|
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGn----ei~l~IVGNKiDLEee--R~Vt~qeAe~YAesvG-A~y~eTSAk~N~G 162 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGN----EIELLIVGNKIDLEEE--RQVTRQEAEAYAESVG-ALYMETSAKDNVG 162 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCC----eeEEEEecCcccHHHh--hhhhHHHHHHHHHhhc-hhheecccccccC
Confidence 9999999999999999999999988765 6789999999999876 8999999999999999 8999999999999
Q ss_pred hHHHHHHHHHHHHhccc
Q 028305 169 IDEAFLCVAEIALKNEH 185 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~ 185 (210)
|.++|+.|..++++.-.
T Consensus 163 i~elFe~Lt~~MiE~~s 179 (218)
T KOG0088|consen 163 ISELFESLTAKMIEHSS 179 (218)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999887753
No 79
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=5.5e-32 Score=192.57 Aligned_cols=160 Identities=24% Similarity=0.395 Sum_probs=128.3
Q ss_pred eEEEEEEcCCCCcHHHHHH-HHhhCc-----CCCcccceeee-EEEEEE--------EEeCCeEEEEEEEeCCCcccccc
Q 028305 12 LLKVIVLGDSGVGKTSLMN-QYVYNK-----FSQQYKATIGA-DFVTKE--------LQMDDKLVTLQIWDTAGQERFQS 76 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 76 (210)
.+||+++|+.|+|||||+. ++.++. +...+.|+++. +.+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999995 565443 34556677642 322222 25688899999999999875 3
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC-----------------CC
Q 028305 77 LGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGG-----------------SS 138 (210)
Q Consensus 77 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~-----------------~~ 138 (210)
....+++++|++|+|||++++.+|+.+. .|+..+..... ++|+++|+||+|+... ..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-----~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-----RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNA 154 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhccccccchhhhcccccccccccC
Confidence 4456789999999999999999999997 58888766542 6799999999998642 13
Q ss_pred cccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHH
Q 028305 139 RVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
+.+..++++.+++..+ .+|++|||++|.||+++|+.+++.
T Consensus 155 ~~V~~~e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 155 DILPPETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CccCHHHHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 6788899999999998 699999999999999999999864
No 80
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=9.2e-32 Score=187.17 Aligned_cols=162 Identities=41% Similarity=0.730 Sum_probs=142.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
.+||+++|++|+|||||+++|+++.+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998876777877777778888888889999999999998888888889999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHH
Q 028305 92 YDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDE 171 (210)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (210)
+|+++++++.....|+..+..... .++|+++++||+|+.+. +....++...++...+ ..++++||++|.|+.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS----PNIIIALVGNKADLESK--RQVSTEEAQEYADENG-LLFFETSAKTGENVNE 153 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--CcCCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence 999999999999999998877643 27899999999998753 4456667777888777 8899999999999999
Q ss_pred HHHHHHHHH
Q 028305 172 AFLCVAEIA 180 (210)
Q Consensus 172 ~~~~l~~~~ 180 (210)
+|++|++.+
T Consensus 154 l~~~l~~~l 162 (163)
T cd01860 154 LFTEIAKKL 162 (163)
T ss_pred HHHHHHHHh
Confidence 999999875
No 81
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=8.5e-32 Score=187.55 Aligned_cols=160 Identities=33% Similarity=0.567 Sum_probs=135.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC--cCCCcccceeeeEEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN--KFSQQYKATIGADFVTKELQMD-DKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
+||+++|++|||||||+++|..+ .+...+.++.+.++......++ +..+.+.+|||||+..+..+...+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999865 6777788888888776666664 56799999999999988888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
+|||++++++++.+..|+..+.... .++|+++|+||+|+.+. ......+...+....+ .+++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 152 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-----KHMPGVLVGNKMDLADK--AEVTDAQAQAFAQANQ-LKFFKTSALRGVGY 152 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccc--cCCCHHHHHHHHHHcC-CeEEEEeCCCCCCh
Confidence 9999999999999999998887654 26899999999999654 3444555556666666 78999999999999
Q ss_pred HHHHHHHHHHH
Q 028305 170 DEAFLCVAEIA 180 (210)
Q Consensus 170 ~~~~~~l~~~~ 180 (210)
+++|+.+++.+
T Consensus 153 ~~l~~~l~~~~ 163 (164)
T cd04101 153 EEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 82
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=1.8e-31 Score=186.57 Aligned_cols=164 Identities=34% Similarity=0.630 Sum_probs=140.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
.+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 37999999999999999999999988777777776443 56667788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHH
Q 028305 92 YDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDE 171 (210)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (210)
||++++++++.+..|...+.+... ..+.|+++++||.|+.+. +....++...+++..+..+++++||++|.|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKD---SDNVPMVLVGNKADLEDD--RQVSREDGVSLSQQWGNVPFYETSARKRTNVDE 154 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC---CCCCCEEEEEEChhcccc--CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHH
Confidence 999999999999999888876432 227899999999999654 455666777777777768899999999999999
Q ss_pred HHHHHHHHHH
Q 028305 172 AFLCVAEIAL 181 (210)
Q Consensus 172 ~~~~l~~~~~ 181 (210)
+|++++..++
T Consensus 155 ~f~~i~~~~~ 164 (168)
T cd04177 155 VFIDLVRQII 164 (168)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 83
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-34 Score=186.51 Aligned_cols=175 Identities=38% Similarity=0.633 Sum_probs=158.1
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEe---------CCeEEEEEEEeCCCccccccccc
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQM---------DDKLVTLQIWDTAGQERFQSLGS 79 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~D~~g~~~~~~~~~ 79 (210)
.+..+|.+.+|+.|+|||||+.++..+.|..+...++++++..+.+.+ .+..+.+++|||+|+++|++++.
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT 85 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT 85 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence 356788999999999999999999999999999999999998887765 34568899999999999999999
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEE
Q 028305 80 AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYF 159 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
.+++.+=+++++||+++..||-++..|+.+++.++.. +++.+++++||+|+.+. +++..++...++.+++ ++||
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYc---E~PDivlcGNK~DL~~~--R~Vs~~qa~~La~kyg-lPYf 159 (219)
T KOG0081|consen 86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYC---ENPDIVLCGNKADLEDQ--RVVSEDQAAALADKYG-LPYF 159 (219)
T ss_pred HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhcc---CCCCEEEEcCccchhhh--hhhhHHHHHHHHHHhC-CCee
Confidence 9999999999999999999999999999999876543 37789999999999876 8999999999999999 9999
Q ss_pred EecCCCCCChHHHHHHHHHHHHhccccccc
Q 028305 160 ETSAKEDCNIDEAFLCVAEIALKNEHKDIY 189 (210)
Q Consensus 160 ~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~~ 189 (210)
++||-+|.||++..+.++..++++.++-..
T Consensus 160 ETSA~tg~Nv~kave~LldlvM~Rie~~v~ 189 (219)
T KOG0081|consen 160 ETSACTGTNVEKAVELLLDLVMKRIEQCVE 189 (219)
T ss_pred eeccccCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988774433
No 84
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8e-34 Score=180.86 Aligned_cols=162 Identities=43% Similarity=0.671 Sum_probs=150.3
Q ss_pred EEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECC
Q 028305 17 VLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVN 95 (210)
Q Consensus 17 v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~ 95 (210)
++|+.++|||+|+-++..+.|. .....++++++..+.+..++.++++++|||+|+++|++....|++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999998887775 456788999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHH
Q 028305 96 VQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLC 175 (210)
Q Consensus 96 ~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 175 (210)
|..||++...|+.++..+... .+.+.+++||+|+..+ +.+..++++.+++.++ ++++++||++|.|++-.|..
T Consensus 82 nkasfdn~~~wlsei~ey~k~----~v~l~llgnk~d~a~e--r~v~~ddg~kla~~y~-ipfmetsaktg~nvd~af~~ 154 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKE----AVALMLLGNKCDLAHE--RAVKRDDGEKLAEAYG-IPFMETSAKTGFNVDLAFLA 154 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHh----hHhHhhhccccccchh--hccccchHHHHHHHHC-CCceeccccccccHhHHHHH
Confidence 999999999999999998765 7789999999999765 8899999999999999 99999999999999999999
Q ss_pred HHHHHHhccc
Q 028305 176 VAEIALKNEH 185 (210)
Q Consensus 176 l~~~~~~~~~ 185 (210)
|.+.+.+..-
T Consensus 155 ia~~l~k~~~ 164 (192)
T KOG0083|consen 155 IAEELKKLKM 164 (192)
T ss_pred HHHHHHHhcc
Confidence 9999887654
No 85
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=2.3e-31 Score=184.86 Aligned_cols=161 Identities=41% Similarity=0.694 Sum_probs=138.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||+++|++..+...+.++.+.......+...+..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887666667666666677777787889999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|++++++++.+..|+..+...... ++|+++|+||+|+... +....+++..+++..+ ..++++|++++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~s~~~~~gi~~~ 153 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKIDLERQ--RVVSKSEAEEYAKSVG-AKHFETSAKTGKGIEEL 153 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence 999999999999998888776543 6899999999999754 4455667777777666 78999999999999999
Q ss_pred HHHHHHHH
Q 028305 173 FLCVAEIA 180 (210)
Q Consensus 173 ~~~l~~~~ 180 (210)
++++.+.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04123 154 FLSLAKRM 161 (162)
T ss_pred HHHHHHHh
Confidence 99998765
No 86
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=2.6e-31 Score=186.85 Aligned_cols=163 Identities=26% Similarity=0.429 Sum_probs=136.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||+++|..+.+...+.++... .....+.+++..+.+.+|||+|++.+......+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 58999999999999999999999887766666643 33446677888889999999999999988899999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC----------CcccchHHHHHHHHHcCCCcEEEe
Q 028305 93 DVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGS----------SRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
|++++.+|+.+. .|...+... . .+.|+++|+||+|+.+.. .+.+..+++..+++..+...++++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~----~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-A----PNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVEC 154 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-C----CCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999886 566666544 2 278999999999986432 134567788888888886689999
Q ss_pred cCCCCCChHHHHHHHHHHHH
Q 028305 162 SAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~~~ 181 (210)
||++|.|++++|+.+++.++
T Consensus 155 Sa~~~~gi~~~f~~~~~~~~ 174 (174)
T cd04135 155 SALTQKGLKTVFDEAILAIL 174 (174)
T ss_pred cCCcCCCHHHHHHHHHHHhC
Confidence 99999999999999998763
No 87
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=2.7e-31 Score=184.46 Aligned_cols=160 Identities=42% Similarity=0.708 Sum_probs=138.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887667777777777677777788899999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|.+++.+++.+..|+..+...... .++|+++|+||+|+.. .....++...++...+ .+++++|+++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~---~~~~~~iv~nK~D~~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTN---NDIVKMLVGNKIDKEN---REVTREEGLKFARKHN-MLFIETSAKTRDGVQQA 153 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCC---CCCcEEEEEECCcccc---cccCHHHHHHHHHHcC-CEEEEEecCCCCCHHHH
Confidence 999999999999998888776432 2789999999999974 3455667778887766 89999999999999999
Q ss_pred HHHHHHH
Q 028305 173 FLCVAEI 179 (210)
Q Consensus 173 ~~~l~~~ 179 (210)
++.+.+.
T Consensus 154 ~~~~~~~ 160 (161)
T cd01863 154 FEELVEK 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=5.2e-31 Score=191.41 Aligned_cols=165 Identities=26% Similarity=0.371 Sum_probs=135.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccccccccc-CCcEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYR-GADCCVL 90 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~vi~ 90 (210)
+||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++....+.+|||+|++. .....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988876 55666665566677788888889999999999872 23344556 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+. +.+..++...++...+ .+++++||++|.|++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~---~~~~piilV~NK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~SA~~~~gv~ 152 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQ---LEDRPIILVGNKSDLARS--REVSVQEGRACAVVFD-CKFIETSAGLQHNVD 152 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEChhcccc--ceecHHHHHHHHHHcC-CeEEEecCCCCCCHH
Confidence 9999999999999999888876532 127899999999999764 5566677778887776 789999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 028305 171 EAFLCVAEIALKNEH 185 (210)
Q Consensus 171 ~~~~~l~~~~~~~~~ 185 (210)
++|+++++.+.....
T Consensus 153 ~l~~~l~~~~~~~~~ 167 (221)
T cd04148 153 ELLEGIVRQIRLRRD 167 (221)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999875443
No 89
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-30 Score=182.67 Aligned_cols=164 Identities=38% Similarity=0.666 Sum_probs=140.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...++|+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||+..+......+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999988887777777777787888888888899999999999988888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
+|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....+....+.+... ..++++|+++|.|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~----~~~~i~v~NK~D~~~~--~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gv 157 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANN----KVITILVGNKIDLAER--REVSQQRAEEFSDAQD-MYYLETSAKESDNV 157 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEeeCCCCCCH
Confidence 999999999999998998887665432 6899999999998654 4455555666666655 78999999999999
Q ss_pred HHHHHHHHHHH
Q 028305 170 DEAFLCVAEIA 180 (210)
Q Consensus 170 ~~~~~~l~~~~ 180 (210)
+++|+++.+.+
T Consensus 158 ~~l~~~i~~~~ 168 (169)
T cd04114 158 EKLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHHh
Confidence 99999999765
No 90
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=1.1e-30 Score=185.56 Aligned_cols=167 Identities=28% Similarity=0.516 Sum_probs=137.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
.||+|+|++|+|||||+++|..+.+...+.++....+ ...+..++..+.+.+||++|++.+......+++.+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998888766666654443 345667788889999999999888777777788999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC--------CcccchHHHHHHHHHcCCCcEEEecC
Q 028305 93 DVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGS--------SRVVPQKKALEWCAYRGNIPYFETSA 163 (210)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (210)
|++++++++.+. .|+..+..... ++|+++|+||+|+.+.. .+.+..++...+++..+...++++||
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 155 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-----NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSA 155 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccC
Confidence 999999999986 58777765432 68999999999985421 23455667888888888668999999
Q ss_pred CCCCChHHHHHHHHHHHHhccc
Q 028305 164 KEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
++|.|++++|+++.+.++..++
T Consensus 156 ~~~~~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 156 LTGEGVDDVFEAATRAALLVRK 177 (187)
T ss_pred CCCCCHHHHHHHHHHHHhcccC
Confidence 9999999999999999877766
No 91
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=7.9e-31 Score=184.54 Aligned_cols=162 Identities=27% Similarity=0.516 Sum_probs=134.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
.||+++|++|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+......++..+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999988877777776544 345677888899999999999998888888889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC----------CcccchHHHHHHHHHcCCCcEEEe
Q 028305 93 DVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGS----------SRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
|++++++++.+. .|...+..... +.|+++|+||+|+.... ...+...+.+.++...+...++++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 155 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMEC 155 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEe
Confidence 999999998885 57776655432 78999999999986431 123445677888888776789999
Q ss_pred cCCCCCChHHHHHHHHHHH
Q 028305 162 SAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~~ 180 (210)
||++|.|++++|+++.+.+
T Consensus 156 Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 156 SAKTKEGVREVFEMATRAA 174 (175)
T ss_pred ccccCcCHHHHHHHHHHHh
Confidence 9999999999999998765
No 92
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=2.9e-31 Score=185.05 Aligned_cols=162 Identities=28% Similarity=0.441 Sum_probs=132.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc-ccccccccccCCcEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER-FQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~vi~v~ 92 (210)
||+++|++|+|||||+++++.+.+...+.++....+ ...+.+++..+.+.+||+||+.. .......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999998887766666654333 45567788889999999999885 3445677889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC-CChHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED-CNIDE 171 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~v~~ 171 (210)
|++++.+++.+..|+..+..... ...++|+++|+||+|+.+. +.+..++...+++..+ .+++++||++| .|+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKK--RDREIPVILVGNKADLLHY--RQVSTEEGEKLASELG-CLFFEVSAAEDYDGVHS 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECCchHHh--CccCHHHHHHHHHHcC-CEEEEeCCCCCchhHHH
Confidence 99999999999999888876532 1126899999999998654 4556677888888887 78999999999 59999
Q ss_pred HHHHHHHHHH
Q 028305 172 AFLCVAEIAL 181 (210)
Q Consensus 172 ~~~~l~~~~~ 181 (210)
+|+.+++.+.
T Consensus 155 ~f~~l~~~~~ 164 (165)
T cd04146 155 VFHELCREVR 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 93
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.98 E-value=6.2e-31 Score=188.43 Aligned_cols=188 Identities=30% Similarity=0.447 Sum_probs=144.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYD 93 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 93 (210)
||+++|++|+|||||+++|+.+.+...+.++.. +.....+.+.+..+.+.+||++|+..+..+...++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888766666653 3445567777877899999999999988888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHH
Q 028305 94 VNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173 (210)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 173 (210)
++++.+++.+..|+..+...... .++|+++|+||+|+.+.. .....+.............++++||++|.|++++|
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~NK~Dl~~~~-~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKED---KFVPIVVVGNKADSLEEE-RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVF 155 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEEcccccccc-ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHH
Confidence 99999999999998888765432 268999999999986531 33334444444432333789999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCcceecccccccccc
Q 028305 174 LCVAEIALKNEHKDIYYQPQGISETVSEVEQRGGC 208 (210)
Q Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 208 (210)
+++++.+......... .+......++.+++++|
T Consensus 156 ~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 188 (198)
T cd04147 156 KELLRQANLPYNLSPA--LRRRRESLPSEIQRRPP 188 (198)
T ss_pred HHHHHHhhcccccchh--hHHHHhhccHhhhcCCC
Confidence 9999988644442222 22333334555777777
No 94
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.98 E-value=1.8e-30 Score=179.49 Aligned_cols=159 Identities=47% Similarity=0.834 Sum_probs=140.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+......+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988877888888888888888888899999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|++++++++.+..|+..+...... +.|+++++||+|+... .....++...++...+ .+++++|++++.|++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPE----NIPIILVGNKIDLEDQ--RQVSTEEAQQFAKENG-LLFFETSAKTGENVEEL 153 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEEccccccc--ccccHHHHHHHHHHcC-CeEEEEecCCCCCHHHH
Confidence 999999999999999888776532 6899999999999632 4556778888888765 89999999999999999
Q ss_pred HHHHHH
Q 028305 173 FLCVAE 178 (210)
Q Consensus 173 ~~~l~~ 178 (210)
|++|.+
T Consensus 154 ~~~i~~ 159 (159)
T cd00154 154 FQSLAE 159 (159)
T ss_pred HHHHhC
Confidence 999863
No 95
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=4.4e-30 Score=178.79 Aligned_cols=163 Identities=33% Similarity=0.603 Sum_probs=137.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||+++++...+...+.++....+ ......++..+.+.+||+||+..+......+++.+|++++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999888766666665443 455667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|++++.++..+..|+..+..... ..++|+++|+||+|+... ......+...+....+ .+++++||++|.|++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piiiv~NK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l 153 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKD---DDNVPLLLVGNKCDLEDK--RQVSSEEAANLARQWG-VPYVETSAKTRQNVEKA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEccccccc--cccCHHHHHHHHHHhC-CeEEEeeCCCCCCHHHH
Confidence 99999999999999888887643 227899999999999753 3345566667777666 79999999999999999
Q ss_pred HHHHHHHHHh
Q 028305 173 FLCVAEIALK 182 (210)
Q Consensus 173 ~~~l~~~~~~ 182 (210)
|+++.+.+.+
T Consensus 154 ~~~l~~~~~~ 163 (164)
T cd04139 154 FYDLVREIRQ 163 (164)
T ss_pred HHHHHHHHHh
Confidence 9999987753
No 96
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=7e-30 Score=180.75 Aligned_cols=168 Identities=34% Similarity=0.554 Sum_probs=152.3
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
..+||+++|.+|+|||+|+.+|+...|...+.|+++ +.+.+...++++.+.+.|+||+|++++..+...+++.+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999997 6668888899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
||+++++.||+.+..++..+.+.... ..+|+++||||+|+... +.+..+++..++..++ ++++++||+.+.+++
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~---~~~PivlVGNK~Dl~~~--R~V~~eeg~~la~~~~-~~f~E~Sak~~~~v~ 154 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGR---DDVPIILVGNKCDLERE--RQVSEEEGKALARSWG-CAFIETSAKLNYNVD 154 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCc---CCCCEEEEEEcccchhc--cccCHHHHHHHHHhcC-CcEEEeeccCCcCHH
Confidence 99999999999999999998543332 26899999999999876 8999999999999998 679999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 028305 171 EAFLCVAEIALKNEH 185 (210)
Q Consensus 171 ~~~~~l~~~~~~~~~ 185 (210)
++|..|.+.+-....
T Consensus 155 ~~F~~L~r~~~~~~~ 169 (196)
T KOG0395|consen 155 EVFYELVREIRLPRE 169 (196)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999998877333
No 97
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=9.1e-31 Score=181.27 Aligned_cols=170 Identities=31% Similarity=0.509 Sum_probs=153.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD-DKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
...+|++|||+.++|||+|+..+..+.|+..+.|+.. +.+...+.++ +..+.+.+|||+|+++|..++...+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 4578999999999999999999999999999999997 6667778884 9999999999999999999888889999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC----------CcccchHHHHHHHHHcCCCc
Q 028305 89 VLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKIDTDGGS----------SRVVPQKKALEWCAYRGNIP 157 (210)
Q Consensus 89 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~----------~~~~~~~~~~~~~~~~~~~~ 157 (210)
++||++.++.+++++ ..|+.++..++. ++|+|+||+|.|+..+. ...+..+++..++++.+...
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-----~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~ 155 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCP-----NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVK 155 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCC-----CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcce
Confidence 999999999999996 589999988875 88999999999997432 13578889999999999999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 158 YFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 158 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
|+++||+++.|++++|+..+..++...+
T Consensus 156 y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 156 YLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred eeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999999999988754
No 98
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=2e-29 Score=178.21 Aligned_cols=166 Identities=34% Similarity=0.503 Sum_probs=137.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
.||+++|++|+|||||+++|....+...+.++....+ ...+..++..+.+.+||+||++++......++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998888766666654433 455566777788999999999998888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|+++..+++.+..|+..+.+.... .+.|+++|+||+|+... +....++...+++..+ .+++++||+++.|+.++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l 154 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGK---ESVPIVLVGNKSDLHTQ--RQVSTEEGKELAESWG-AAFLESSARENENVEEA 154 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEEchhhhhc--CccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 999999999999988888765321 26799999999998653 3445556667777666 78999999999999999
Q ss_pred HHHHHHHHHhccc
Q 028305 173 FLCVAEIALKNEH 185 (210)
Q Consensus 173 ~~~l~~~~~~~~~ 185 (210)
|.++.+.+...+.
T Consensus 155 ~~~l~~~~~~~~~ 167 (180)
T cd04137 155 FELLIEEIEKVEN 167 (180)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999876654
No 99
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=3.1e-29 Score=181.90 Aligned_cols=169 Identities=27% Similarity=0.622 Sum_probs=144.2
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
+.....+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 45667899999999999999999999988888888889988888888878888899999999999999888888899999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
++++|||+++..++..+..|+..+..... ++|+++++||+|+... ....+ ...+++..+ ..++++|+++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~i~lv~nK~Dl~~~---~~~~~-~~~~~~~~~-~~~~e~Sa~~~ 153 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVCE-----NIPIVLVGNKVDVKDR---QVKAR-QITFHRKKN-LQYYDISAKSN 153 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccCccc---cCCHH-HHHHHHHcC-CEEEEEeCCCC
Confidence 99999999999999999999988876542 7899999999998642 22222 234555555 78999999999
Q ss_pred CChHHHHHHHHHHHHhccc
Q 028305 167 CNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~~~~ 185 (210)
.|+++.|.+|++.+.....
T Consensus 154 ~~v~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 154 YNFEKPFLWLARRLTNDPN 172 (215)
T ss_pred CCHHHHHHHHHHHHhhccc
Confidence 9999999999999886533
No 100
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=1.1e-29 Score=176.01 Aligned_cols=159 Identities=38% Similarity=0.639 Sum_probs=136.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYD 93 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 93 (210)
||+++|++|||||||++++++..+...+.++.. +........++..+.+.+||+||+..+......+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887766666665 4555666777777899999999999888888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHH
Q 028305 94 VNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAF 173 (210)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 173 (210)
+++++++..+..|+..+...... ..+|+++|+||+|+... .....+++..++...+ .+++++|++++.|++++|
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDD---EDIPIVLVGNKCDLENE--RQVSKEEGKALAKEWG-CPFIETSAKDNINIDEVF 153 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECCccccc--ceecHHHHHHHHHHcC-CcEEEeccCCCCCHHHHH
Confidence 99999999999998888776432 27899999999999763 4566678888888777 899999999999999999
Q ss_pred HHHHHH
Q 028305 174 LCVAEI 179 (210)
Q Consensus 174 ~~l~~~ 179 (210)
++|++.
T Consensus 154 ~~l~~~ 159 (160)
T cd00876 154 KLLVRE 159 (160)
T ss_pred HHHHhh
Confidence 999875
No 101
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=2.5e-30 Score=181.76 Aligned_cols=159 Identities=17% Similarity=0.280 Sum_probs=121.9
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...+||+++|++|+|||||++++..+.+. .+.++.+.+... ... ..+.+.+||+||++.+...+..+++.+|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 45699999999999999999999877764 456666655532 333 3478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH----cCCCcEEEecCCC
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY----RGNIPYFETSAKE 165 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~ 165 (210)
+|||++++.+++....|+..+.+... ..++|+++|+||+|+.+.. ..+++...... .....++++||++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~---~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 158 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDE---LRDAVILVFANKQDLPDAM----KAAEITEKLGLHSIRDRNWYIQPTCATS 158 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHh---hcCCcEEEEEeCcCcccCC----CHHHHHHHhCccccCCCcEEEEEeeCCC
Confidence 99999999999998888777754311 1268999999999996531 22222222211 1124577899999
Q ss_pred CCChHHHHHHHHHHH
Q 028305 166 DCNIDEAFLCVAEIA 180 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~ 180 (210)
|.|++++|++|.+.+
T Consensus 159 g~gv~e~~~~l~~~~ 173 (175)
T smart00177 159 GDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998764
No 102
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=2e-29 Score=176.71 Aligned_cols=160 Identities=29% Similarity=0.537 Sum_probs=131.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||+++|+++.+...+.++.... ........+..+.+.+||+||++++......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDN-YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 589999999999999999999998866666666433 3445567788899999999999988887788889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCc---------ccchHHHHHHHHHcCCCcEEEec
Q 028305 93 DVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSR---------VVPQKKALEWCAYRGNIPYFETS 162 (210)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~S 162 (210)
|++++.++.... .|+..+..... ++|+++|+||+|+...... .+..++...+....+..+++++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 154 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-----NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECS 154 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEee
Confidence 999999988765 46666655433 6899999999999765322 33567788888888855999999
Q ss_pred CCCCCChHHHHHHHHH
Q 028305 163 AKEDCNIDEAFLCVAE 178 (210)
Q Consensus 163 a~~~~~v~~~~~~l~~ 178 (210)
|++|.|++++|+++++
T Consensus 155 a~~~~gi~~l~~~i~~ 170 (171)
T cd00157 155 ALTQEGVKEVFEEAIR 170 (171)
T ss_pred cCCCCCHHHHHHHHhh
Confidence 9999999999999875
No 103
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=1.7e-30 Score=181.46 Aligned_cols=157 Identities=17% Similarity=0.303 Sum_probs=121.6
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
.+.++|+++|++|+|||||+++|..+.+. .+.++.+.+.. .... ..+.+.+|||+|++.+...+..+++.+|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999877765 34566665543 2223 3488999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH---c-CCCcEEEecCCC
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY---R-GNIPYFETSAKE 165 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~Sa~~ 165 (210)
+|||++++.++.....|+..+..... ..++|+++|+||+|+.+. ...+++...... . ....++++||++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~SAk~ 154 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDRE---MRDALLLVFANKQDLPDA----MKPHEIQEKLGLTRIRDRNWYVQPSCATS 154 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHh---hcCCcEEEEEECcCCccC----CCHHHHHHHcCCCccCCCcEEEEEeeCCC
Confidence 99999999999888887776654211 126799999999998642 334555554321 1 124689999999
Q ss_pred CCChHHHHHHHHH
Q 028305 166 DCNIDEAFLCVAE 178 (210)
Q Consensus 166 ~~~v~~~~~~l~~ 178 (210)
|.|++++|++|.+
T Consensus 155 g~gv~~~~~~l~~ 167 (168)
T cd04149 155 GDGLYEGLTWLSS 167 (168)
T ss_pred CCChHHHHHHHhc
Confidence 9999999999864
No 104
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.4e-29 Score=176.69 Aligned_cols=163 Identities=26% Similarity=0.378 Sum_probs=123.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||+++|..+.+...+..+. ... .....+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999988865533322 222 333455667789999999999887777777789999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCC-CcEEEecCCCCCChH
Q 028305 93 DVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGN-IPYFETSAKEDCNID 170 (210)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 170 (210)
|++++.+++.+. .|...+..... ++|+++|+||+|+.+........+++..++..... ..++++||++|.|++
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-----~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 153 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-----KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVS 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHH
Confidence 999999999975 56666655432 68999999999997643211123334444444432 379999999999999
Q ss_pred HHHHHHHHHHHh
Q 028305 171 EAFLCVAEIALK 182 (210)
Q Consensus 171 ~~~~~l~~~~~~ 182 (210)
++|+.+.+.+.+
T Consensus 154 ~lf~~~~~~~~~ 165 (166)
T cd01893 154 EVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHhcC
Confidence 999999988764
No 105
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=7.9e-30 Score=178.39 Aligned_cols=160 Identities=19% Similarity=0.320 Sum_probs=126.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYD 93 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 93 (210)
||+++|++|||||||+++|.+..+.. +.++.+.+.. .+.. ..+.+.+|||||+.++...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999887653 5666655553 2333 34789999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcC-----CCcEEEecCCCCCC
Q 028305 94 VNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRG-----NIPYFETSAKEDCN 168 (210)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~ 168 (210)
.+++.+++.+..|+..+.+... ..+.|+++|+||+|+.. ....+++...+...+ ...++++||++|.|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 148 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKE---LRDALLLIFANKQDVAG----ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG 148 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChh---hCCCCEEEEEeCcCccc----CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC
Confidence 9999999999888888765321 12579999999999964 244555555543221 13688999999999
Q ss_pred hHHHHHHHHHHHHhccc
Q 028305 169 IDEAFLCVAEIALKNEH 185 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~ 185 (210)
++++|++|++.++...+
T Consensus 149 v~~~f~~l~~~~~~~~~ 165 (169)
T cd04158 149 LYEGLDWLSRQLVAAGV 165 (169)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 99999999998877654
No 106
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=5.4e-30 Score=180.79 Aligned_cols=162 Identities=15% Similarity=0.278 Sum_probs=123.1
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...+||+++|++|||||||++++..+.+. .+.|+.+.+.. .+.. ..+.+.+||+||++.+..++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999877775 45666665543 2333 3478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc----CCCcEEEecCCC
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR----GNIPYFETSAKE 165 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~ 165 (210)
+|||+++++++.....++..+.... ...++|++||+||.|+... ...+++...+.-. +...++++||++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~---~~~~~piilv~NK~Dl~~~----~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~ 162 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCH---hhCCCCEEEEEECCCCCCC----CCHHHHHHHhCccccCCCceEEEeccCCC
Confidence 9999999999988777666654321 1126899999999998753 2233333322111 112466899999
Q ss_pred CCChHHHHHHHHHHHHhc
Q 028305 166 DCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~ 183 (210)
|+|+.++|++|.+.+.+.
T Consensus 163 g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 163 GEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCHHHHHHHHHHHHhhc
Confidence 999999999999887653
No 107
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.5e-29 Score=179.02 Aligned_cols=166 Identities=21% Similarity=0.314 Sum_probs=128.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEe-CCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQM-DDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
.+||+++|++|||||||++++..+.+... .++.+.+.....+.. ++..+.+.+|||+|++.+...+..+++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999998877643 555555554444433 3456889999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH--c---CCCcEEEecCCC
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY--R---GNIPYFETSAKE 165 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~Sa~~ 165 (210)
|+|++++.+++....|+..+...... .+.|+++|+||+|+.+. ...+++..+... . ...+++++||++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~---~~~p~iiv~NK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 154 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSEN---QGVPVLVLANKQDLPNA----LSVSEVEKLLALHELSASTPWHVQPACAII 154 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhc---CCCcEEEEEECcCcccc----CCHHHHHHHhCccccCCCCceEEEEeeccc
Confidence 99999999888888887777654321 26899999999998642 223334433321 1 124689999999
Q ss_pred CCChHHHHHHHHHHHHhccc
Q 028305 166 DCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~~~ 185 (210)
|.|+++++++|.+.+.+.++
T Consensus 155 ~~gi~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 155 GEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999976655
No 108
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=5.4e-30 Score=177.42 Aligned_cols=154 Identities=16% Similarity=0.292 Sum_probs=116.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|.+|||||||++++..+.+. .+.|+.+.+.. .+.. ..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999877776 45666665543 2333 3488999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHH-HHHHH---HcCCCcEEEecCCCCCC
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKA-LEWCA---YRGNIPYFETSAKEDCN 168 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~Sa~~~~~ 168 (210)
|++++.+++....|+..+..... ..++|+++++||+|+.... ..+++ ..+.. ......++++||++|.|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDE---LRDAVLLVFANKQDLPNAM----SAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHH---hcCCCEEEEEECCCCCCCC----CHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence 99999999988887776653211 1267999999999996431 12222 22211 01124578999999999
Q ss_pred hHHHHHHHHH
Q 028305 169 IDEAFLCVAE 178 (210)
Q Consensus 169 v~~~~~~l~~ 178 (210)
++++|++|.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 109
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.5e-29 Score=178.82 Aligned_cols=162 Identities=17% Similarity=0.288 Sum_probs=122.0
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...+||+++|++|||||||++++..+.+.. +.++.+.++. .+.. ..+.+.+|||+|++.+...+..+++.+|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 446899999999999999999998777754 5566665543 2333 4478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH----cCCCcEEEecCCC
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY----RGNIPYFETSAKE 165 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~ 165 (210)
+|+|++++.+++....++..+.... ...++|+++|+||.|+.+.. ..+++...... .....++++||++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~~----~~~~i~~~l~~~~~~~~~~~~~~~Sa~t 162 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSED---ELRDAVLLVFANKQDLPNAM----STTEVTEKLGLHSVRQRNWYIQGCCATT 162 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCH---hhcCCCEEEEEeCCCCCCCC----CHHHHHHHhCCCcccCCcEEEEeeeCCC
Confidence 9999999999988877666664321 12267999999999986431 12222221111 1113567999999
Q ss_pred CCChHHHHHHHHHHHHhc
Q 028305 166 DCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~ 183 (210)
|.|++++|++|.+.+.+.
T Consensus 163 g~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 163 AQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999887654
No 110
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=5.7e-30 Score=178.16 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=121.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYD 93 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 93 (210)
.|+++|++|+|||||+++|.++.+...+.++.+... ..++...+.+.+||++|++.+...+..+++.+|++++|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999998887777777776543 2234456889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCccc--chHHHHHHHHHcCCCcEEEecCCC------
Q 028305 94 VNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVV--PQKKALEWCAYRGNIPYFETSAKE------ 165 (210)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~------ 165 (210)
.+++.++.....|+..+.... .++|+++|+||.|+........ ...++..+++..+ ..++++||++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-----~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~Sa~~~~s~~~ 150 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-----PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRR-WILQGTSLDDDGSPSR 150 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-----CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCc-eEEEEeeecCCCChhH
Confidence 999999998888877775432 2789999999999875421110 0122344555444 7789999988
Q ss_pred CCChHHHHHHHHH
Q 028305 166 DCNIDEAFLCVAE 178 (210)
Q Consensus 166 ~~~v~~~~~~l~~ 178 (210)
++|++++|+.++.
T Consensus 151 ~~~v~~~~~~~~~ 163 (164)
T cd04162 151 MEAVKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998863
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=4.9e-29 Score=175.09 Aligned_cols=158 Identities=18% Similarity=0.327 Sum_probs=121.5
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
+...++|+++|++|+|||||+++|.+..+. .+.++.+.. ...+.++ .+.+.+||+||++.+...+..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 456789999999999999999999977543 444555432 3334444 47799999999998888888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH----cCCCcEEEecCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY----RGNIPYFETSAK 164 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~ 164 (210)
++|||++++.++.....|+..+.... ...++|+++|+||+|+.+. ...+++...... ....+++++||+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEE---RLAGATLLILANKQDLPGA----LSEEEIREALELDKISSHHWRIQPCSAV 158 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECcccccC----CCHHHHHHHhCccccCCCceEEEeccCC
Confidence 99999999999988888877765421 1127899999999999753 133444444422 224689999999
Q ss_pred CCCChHHHHHHHHH
Q 028305 165 EDCNIDEAFLCVAE 178 (210)
Q Consensus 165 ~~~~v~~~~~~l~~ 178 (210)
+|.|++++|+++++
T Consensus 159 ~g~gi~~l~~~l~~ 172 (173)
T cd04154 159 TGEGLLQGIDWLVD 172 (173)
T ss_pred CCcCHHHHHHHHhc
Confidence 99999999999864
No 112
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=3.6e-28 Score=173.21 Aligned_cols=166 Identities=23% Similarity=0.340 Sum_probs=128.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC-----CeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD-----DKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
+||+++|+.|+|||||+++|+.+.+...+.++.+.++..+.+.++ +..+.+.+|||+|++.+..+...+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877776666663 467899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC---------------CCCCCCCCEEEEEecCCCCCCCC--cccchHHHHHHH
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQAD---------------PGEHEACPFVLLGNKIDTDGGSS--RVVPQKKALEWC 150 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~---------------~~~~~~~p~ilv~~K~D~~~~~~--~~~~~~~~~~~~ 150 (210)
+|+|||++++.+++++..|+..+..... .....++|+++|+||+|+.+... ..........++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 9999999999999999999999876421 01123789999999999965411 111222344566
Q ss_pred HHcCCCcEEEecCCCCC----------ChHHHHHHHHHH
Q 028305 151 AYRGNIPYFETSAKEDC----------NIDEAFLCVAEI 179 (210)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~----------~v~~~~~~l~~~ 179 (210)
...+ .+.++.++.++. .+..+|+.++++
T Consensus 161 ~~~~-~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 161 EQGN-AEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred HhcC-CceEEEecCCcccccCCCccHHHHHHHHHHHHHh
Confidence 6666 777777777443 334555555544
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=7.2e-29 Score=172.38 Aligned_cols=156 Identities=20% Similarity=0.313 Sum_probs=116.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcC-CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKF-SQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+|+++|++|||||||+++|.+..+ ...+.++.+.... .+.. ..+.+.+|||||+.++...+..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 4455566654332 2222 3578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHH----HcCCCcEEEecCCCCCC
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCA----YRGNIPYFETSAKEDCN 168 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 168 (210)
|.+++.++.....|+..+.+... ....++|+++|+||+|+.+.. ..++...... ......++++||++|.|
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~~----~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~g 151 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPD-IKHRRVPILFFANKMDLPDAL----TAVKITQLLGLENIKDKPWHIFASNALTGEG 151 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcc-cccCCCCEEEEEeCccccCCC----CHHHHHHHhCCccccCceEEEEEeeCCCCCc
Confidence 99999999888888777654311 112378999999999996532 1222222211 11124589999999999
Q ss_pred hHHHHHHHHH
Q 028305 169 IDEAFLCVAE 178 (210)
Q Consensus 169 v~~~~~~l~~ 178 (210)
++++|++|.+
T Consensus 152 v~~~~~~l~~ 161 (162)
T cd04157 152 LDEGVQWLQA 161 (162)
T ss_pred hHHHHHHHhc
Confidence 9999999864
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=2.8e-28 Score=171.32 Aligned_cols=156 Identities=22% Similarity=0.331 Sum_probs=118.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
..++|+++|++|+|||||++++..+.+.. +.++.+.+.. ....+ .+.+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999877764 4555554443 33343 4789999999999998888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHH----HcCCCcEEEecCCCC
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCA----YRGNIPYFETSAKED 166 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~ 166 (210)
|+|.++++++.....++..+..... ..++|+++++||+|+.+. ...++...... .....+++++||++|
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~---~~~~p~viv~NK~Dl~~~----~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHED---LRKAVLLVLANKQDLKGA----MTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchh---hcCCCEEEEEECCCCCCC----CCHHHHHHHhCcccccCCceEEEecccCCC
Confidence 9999999888877776666644321 126899999999998652 12222222111 112257999999999
Q ss_pred CChHHHHHHHHH
Q 028305 167 CNIDEAFLCVAE 178 (210)
Q Consensus 167 ~~v~~~~~~l~~ 178 (210)
.|++++|++|.+
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999975
No 115
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=3.7e-28 Score=168.49 Aligned_cols=154 Identities=25% Similarity=0.356 Sum_probs=115.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYD 93 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 93 (210)
+|+++|++|+|||||+++|.+..+.. ..++.+... ..+.. +..+.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999888753 345554433 22333 235789999999999888888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHH--Hc---CCCcEEEecCCCCCC
Q 028305 94 VNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCA--YR---GNIPYFETSAKEDCN 168 (210)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~Sa~~~~~ 168 (210)
.+++.++.....|+..+.+... ..+.|+++|+||+|+.... ..+++..... .. ...+++++||++|.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEH---IKGVPVVLLANKQDLPGAL----TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEG 149 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchh---hcCCCEEEEEECcccccCc----CHHHHHHHcCCcccCCCCcEEEEecccccCCC
Confidence 9999988888888777754321 1278999999999986421 1222222211 11 124699999999999
Q ss_pred hHHHHHHHHH
Q 028305 169 IDEAFLCVAE 178 (210)
Q Consensus 169 v~~~~~~l~~ 178 (210)
++++|++|.+
T Consensus 150 v~~~~~~i~~ 159 (160)
T cd04156 150 LAEAFRKLAS 159 (160)
T ss_pred hHHHHHHHhc
Confidence 9999999864
No 116
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=4e-28 Score=169.39 Aligned_cols=157 Identities=19% Similarity=0.244 Sum_probs=119.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYD 93 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 93 (210)
+|+++|++|||||||+++|.+. +...+.++.+... ..+..+ .+.+.+||+||+..+...+..+++.+|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 6556667766543 334443 4789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcc--cchHHHHHHHHHcC-CCcEEEecCCCC----
Q 028305 94 VNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRV--VPQKKALEWCAYRG-NIPYFETSAKED---- 166 (210)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~Sa~~~---- 166 (210)
.+++.+++.+..|+..+.+.. ...++|+++|+||+|+....... .....+..++...+ ...++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~---~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~ 152 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHP---RVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKK 152 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCc---cccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCc
Confidence 999999999888888876532 12378999999999997642111 11111223332222 256888999998
Q ss_pred --CChHHHHHHHHH
Q 028305 167 --CNIDEAFLCVAE 178 (210)
Q Consensus 167 --~~v~~~~~~l~~ 178 (210)
.|+.+.|+||..
T Consensus 153 ~~~g~~~~~~wl~~ 166 (167)
T cd04161 153 IDPSIVEGLRWLLA 166 (167)
T ss_pred cccCHHHHHHHHhc
Confidence 899999999975
No 117
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.96 E-value=1.1e-27 Score=165.88 Aligned_cols=153 Identities=20% Similarity=0.374 Sum_probs=117.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYD 93 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 93 (210)
||+++|++|||||||++++++..+. .+.++.+... ..+.++ .+.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988743 4445554433 233343 4789999999999988888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH----cCCCcEEEecCCCCCCh
Q 028305 94 VNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY----RGNIPYFETSAKEDCNI 169 (210)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v 169 (210)
++++.++.....|+..+..... ..+.|+++|+||+|+.... ..++....... ....+++++||++|.|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEE---LKGVPLLIFANKQDLPGAL----SVSELIEKLGLEKILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEeeccCCcccc----CHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence 9999999988888777765432 2378999999999987542 12223222221 22467999999999999
Q ss_pred HHHHHHHHH
Q 028305 170 DEAFLCVAE 178 (210)
Q Consensus 170 ~~~~~~l~~ 178 (210)
+++|++|..
T Consensus 149 ~~~~~~l~~ 157 (158)
T cd00878 149 DEGLDWLLQ 157 (158)
T ss_pred HHHHHHHhh
Confidence 999999875
No 118
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=7.4e-28 Score=166.70 Aligned_cols=153 Identities=20% Similarity=0.347 Sum_probs=112.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYD 93 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 93 (210)
||+++|++++|||||++++..+.+.. +.++.+.+.. .+.. ..+.+.+|||||+..+...+..+++.+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776653 3455444432 2333 34789999999999998888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc----CCCcEEEecCCCCCCh
Q 028305 94 VNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR----GNIPYFETSAKEDCNI 169 (210)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v 169 (210)
++++.++.....++..+.+.. ...++|+++|+||+|+.+.. ...++....... ...+++++||++|.|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEE---ELKGAVLLVFANKQDMPGAL----SEAEISEKLGLSELKDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhch---hhcCCcEEEEEeCCCCCCCC----CHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence 999888776666555443321 11268999999999986431 112222111110 1246999999999999
Q ss_pred HHHHHHHHH
Q 028305 170 DEAFLCVAE 178 (210)
Q Consensus 170 ~~~~~~l~~ 178 (210)
+++|++|.+
T Consensus 149 ~~l~~~l~~ 157 (158)
T cd04151 149 DEGMDWLVN 157 (158)
T ss_pred HHHHHHHhc
Confidence 999999975
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=8.4e-28 Score=167.87 Aligned_cols=154 Identities=23% Similarity=0.368 Sum_probs=115.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcC------CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKF------SQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
+|+|+|++|+|||||+++|.+... ...+.++.+... ..+.++ ...+.+|||||++.+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999975432 123344444343 334444 4789999999999998888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc------CCCcEEEe
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR------GNIPYFET 161 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 161 (210)
+++|+|.++++++.....|+..+.+... ..++|+++|+||+|+.+. ...++...+.... ...+++++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~NK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEA---LEGVPLLILANKQDLPDA----LSVEEIKEVFQDKAEEIGRRDCLVLPV 149 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChh---hcCCCEEEEEEccccccC----CCHHHHHHHhccccccccCCceEEEEe
Confidence 9999999998888888777777654321 227899999999998653 2223333333221 23579999
Q ss_pred cCCCCCChHHHHHHHHH
Q 028305 162 SAKEDCNIDEAFLCVAE 178 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~ 178 (210)
||++|.|+++++++|.+
T Consensus 150 Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 150 SALEGTGVREGIEWLVE 166 (167)
T ss_pred eCCCCcCHHHHHHHHhc
Confidence 99999999999999975
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=2.8e-27 Score=168.61 Aligned_cols=158 Identities=23% Similarity=0.384 Sum_probs=121.8
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...++|+++|++|||||||++++.+..+. .+.++.+.. ...+.+++ ..+.+||+||+..+...+..+++.+|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 35789999999999999999999987764 444554433 23444554 67899999999988888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc---------------C
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR---------------G 154 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~---------------~ 154 (210)
+|+|+++..++.....|+..+..... ..+.|+++++||+|+.. ....+++...+... .
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~---~~~~pvivv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEE---LANVPFLILGNKIDLPG----AVSEEELRQALGLYGTTTGKGVSLKVSGIR 164 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCcc---ccCCCEEEEEeCCCCCC----CcCHHHHHHHhCcccccccccccccccCce
Confidence 99999999888887777777764322 22689999999999864 23445555554321 2
Q ss_pred CCcEEEecCCCCCChHHHHHHHHHH
Q 028305 155 NIPYFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
...++++||++|.|++++|++|.+.
T Consensus 165 ~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 165 PIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEEEEEeEecCCCChHHHHHHHHhh
Confidence 2468999999999999999999875
No 121
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=2.9e-27 Score=165.99 Aligned_cols=160 Identities=27% Similarity=0.467 Sum_probs=124.5
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
....++|+++|+.|||||||++++..+... ...|+.+... ..+.+++ +.+.+||.+|+..++..+..++..+|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~--~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNI--EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEE--EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCccccccc--ceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 478999999999999999999999876544 3556665444 3444544 7799999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH-----cCCCcEEEecC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY-----RGNIPYFETSA 163 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa 163 (210)
|||+|.++++.+......+..+.... ...++|+++++||.|+.+.. ..+++...... .....++.+||
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~---~~~~~piLIl~NK~D~~~~~----~~~~i~~~l~l~~l~~~~~~~v~~~sa 158 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDP---ELKDIPILILANKQDLPDAM----SEEEIKEYLGLEKLKNKRPWSVFSCSA 158 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSG---GGTTSEEEEEEESTTSTTSS----THHHHHHHTTGGGTTSSSCEEEEEEBT
T ss_pred EEEEecccceeecccccchhhhcchh---hcccceEEEEeccccccCcc----hhhHHHhhhhhhhcccCCceEEEeeec
Confidence 99999999988888776666665432 22378999999999987642 23333332211 23466999999
Q ss_pred CCCCChHHHHHHHHHHH
Q 028305 164 KEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~~~ 180 (210)
.+|.|+.+.++||.+.+
T Consensus 159 ~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 159 KTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTTBTHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHhcC
Confidence 99999999999999865
No 122
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=2e-26 Score=171.87 Aligned_cols=150 Identities=28% Similarity=0.480 Sum_probs=124.5
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC-------------CeEEEEEEEeCCCcccc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD-------------DKLVTLQIWDTAGQERF 74 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~ 74 (210)
.....+||+|+|+.|||||||+++|+++.+...+.++++.++....+.++ +..+.+.||||+|++.+
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 34568999999999999999999999999988888898888776666654 35688999999999999
Q ss_pred cccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCC--------CCCCCCCEEEEEecCCCCCCCC-cc---cc
Q 028305 75 QSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADP--------GEHEACPFVLLGNKIDTDGGSS-RV---VP 142 (210)
Q Consensus 75 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~--------~~~~~~p~ilv~~K~D~~~~~~-~~---~~ 142 (210)
..++..+++.+|++|+|||+++..+++.+..|+..+...... ....++|++||+||+|+..... +. +.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 999999999999999999999999999999999999876421 0113689999999999965421 22 36
Q ss_pred hHHHHHHHHHcCCCc
Q 028305 143 QKKALEWCAYRGNIP 157 (210)
Q Consensus 143 ~~~~~~~~~~~~~~~ 157 (210)
.+++++++...+..+
T Consensus 177 ~e~a~~~A~~~g~l~ 191 (334)
T PLN00023 177 VDAARQWVEKQGLLP 191 (334)
T ss_pred HHHHHHHHHHcCCCc
Confidence 789999999887433
No 123
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=5.5e-27 Score=166.07 Aligned_cols=158 Identities=20% Similarity=0.328 Sum_probs=119.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...++|+++|++|+|||||++++.++.+.. +.++.+.. ...+..++ +.+.+||+||+..+...+..+++.+|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 456999999999999999999999876642 33443332 23333433 77999999999998888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH-----------cCCCcE
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY-----------RGNIPY 158 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 158 (210)
+|+|++++.++.....++..+.+.. ...++|+++|+||+|+... ...+++.....- .+...+
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~---~~~~~piliv~NK~Dl~~~----~~~~~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDE---ELATVPFLILGNKIDAPYA----ASEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCh---hhcCCCEEEEEeCccccCC----CCHHHHHHHcCCCcccccccccCCceeEE
Confidence 9999999998888777776665421 1127899999999998642 333444333311 124569
Q ss_pred EEecCCCCCChHHHHHHHHHH
Q 028305 159 FETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 159 ~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
+++||++|.|++++++||..+
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEeecccCCChHHHHHHHHhh
Confidence 999999999999999999865
No 124
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=4.3e-29 Score=167.05 Aligned_cols=169 Identities=30% Similarity=0.536 Sum_probs=157.0
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
-+..+|++++|..++||||++++++.+-|...+..+++.++....+.++.+.+.+.+||++|+++|..+...|++.+.+.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 45789999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++||+-++..||+....|+..+..... .+|.++|-||+|+.++ ..+..++++.+++... ..++.+|++...|
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~~-----~IPtV~vqNKIDlved--s~~~~~evE~lak~l~-~RlyRtSvked~N 168 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKETE-----RIPTVFVQNKIDLVED--SQMDKGEVEGLAKKLH-KRLYRTSVKEDFN 168 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHhc-----cCCeEEeeccchhhHh--hhcchHHHHHHHHHhh-hhhhhhhhhhhhh
Confidence 999999999999999999999988766 8899999999999876 6777888888888877 8899999999999
Q ss_pred hHHHHHHHHHHHHhccc
Q 028305 169 IDEAFLCVAEIALKNEH 185 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~ 185 (210)
+.++|..|++++.+..+
T Consensus 169 V~~vF~YLaeK~~q~~k 185 (246)
T KOG4252|consen 169 VMHVFAYLAEKLTQQKK 185 (246)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999999887655
No 125
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.95 E-value=9.7e-27 Score=160.86 Aligned_cols=154 Identities=29% Similarity=0.466 Sum_probs=118.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYD 93 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 93 (210)
.|+++|++|+|||||+++|.+..+...+.++.+.+... ....+ +.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 37999999999999999999998887777777766543 33333 789999999999999889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHH----HcCCCcEEEecCCCCCCh
Q 028305 94 VNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCA----YRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v 169 (210)
++++.++.....|+..+..... ..++|+++|+||+|+.+... .++...... .....+++++|+++|.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPS---LEGIPLLVLGNKNDLPGALS----VDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChh---hcCCCEEEEEeCccccCCcC----HHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence 9999888887777776654211 12679999999999865321 111111110 112367899999999999
Q ss_pred HHHHHHHHH
Q 028305 170 DEAFLCVAE 178 (210)
Q Consensus 170 ~~~~~~l~~ 178 (210)
++++++|.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999999975
No 126
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=9e-26 Score=158.16 Aligned_cols=143 Identities=34% Similarity=0.564 Sum_probs=124.8
Q ss_pred CcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhc
Q 028305 35 NKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQA 114 (210)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~ 114 (210)
+.|...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45667788999999988888899999999999999999999999999999999999999999999999999999887654
Q ss_pred CCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHHHhcc
Q 028305 115 DPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 115 ~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
.. ++|+++|+||+|+.+. +.+..+++..++...+ ..++++||++|.|++++|++|++.+.+..
T Consensus 83 ~~----~~piilVgNK~DL~~~--~~v~~~e~~~~~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 83 GK----DVIIALVGNKTDLGDL--RKVTYEEGMQKAQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CC----CCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 22 6899999999999753 4566777888887776 68999999999999999999999987643
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=3.7e-26 Score=159.68 Aligned_cols=156 Identities=19% Similarity=0.138 Sum_probs=106.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc---------ccccccC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL---------GSAFYRG 84 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------~~~~~~~ 84 (210)
+|+++|++|+|||||+++|.+..+.....+..+.+........ ..+.+.+|||||+...... .......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 7999999999999999999988765333333333333333333 3478999999997421110 0011123
Q ss_pred CcEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEec
Q 028305 85 ADCCVLVYDVNVQKTF--ESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETS 162 (210)
Q Consensus 85 ~d~vi~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (210)
+|++++|+|++++.++ +....|+..+.... .+.|+++|+||+|+.+.. .. .+...+... ...+++++|
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~--~~--~~~~~~~~~-~~~~~~~~S 149 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-----KNKPVIVVLNKIDLLTFE--DL--SEIEEEEEL-EGEEVLKIS 149 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-----CcCCeEEEEEccccCchh--hH--HHHHHhhhh-ccCceEEEE
Confidence 6899999999987653 55556777665432 267999999999996532 11 113444443 347899999
Q ss_pred CCCCCChHHHHHHHHHHHH
Q 028305 163 AKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 163 a~~~~~v~~~~~~l~~~~~ 181 (210)
|++|.|++++|+++.+.++
T Consensus 150 a~~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 150 TLTEEGVDEVKNKACELLL 168 (168)
T ss_pred ecccCCHHHHHHHHHHHhC
Confidence 9999999999999998763
No 128
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.94 E-value=3.6e-26 Score=159.04 Aligned_cols=155 Identities=22% Similarity=0.151 Sum_probs=106.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC---cCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN---KFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
+.|+++|++|+|||||+++|.+. .+.....++.+.+.........+ ...+.+|||||++++......+++.+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 36899999999999999999863 23333334444444444444432 357999999999988777777788999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc--CCCcEEEecCC
Q 028305 90 LVYDVNV---QKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR--GNIPYFETSAK 164 (210)
Q Consensus 90 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~ 164 (210)
+|+|+++ +.+.+.+ ..+... . ..|+++|+||+|+.+........++........ ...+++++||+
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~~~~-~-----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EILELL-G-----IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAV 149 (164)
T ss_pred EEEECCCCccHhHHHHH----HHHHHh-C-----CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCC
Confidence 9999987 3333322 112111 1 238999999999975321122233444444442 24789999999
Q ss_pred CCCChHHHHHHHHH
Q 028305 165 EDCNIDEAFLCVAE 178 (210)
Q Consensus 165 ~~~~v~~~~~~l~~ 178 (210)
+|.|++++++.+..
T Consensus 150 ~~~~v~~l~~~l~~ 163 (164)
T cd04171 150 TGEGIEELKEYLDE 163 (164)
T ss_pred CCcCHHHHHHHHhh
Confidence 99999999998864
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=4.7e-26 Score=160.78 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=110.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc-------CCCcccc------eeeeEEEEEEE--Ee---CCeEEEEEEEeCCCccccc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK-------FSQQYKA------TIGADFVTKEL--QM---DDKLVTLQIWDTAGQERFQ 75 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~~~ 75 (210)
+|+++|++++|||||+++|++.. +...+.+ +.+.+...... .+ ++..+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998642 1111111 11222222222 22 5667889999999999999
Q ss_pred ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCC
Q 028305 76 SLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGN 155 (210)
Q Consensus 76 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
..+..+++.+|++|+|+|+++..+......|.... . .++|+++|+||+|+.+.. ..+....+++..+.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~-------~~~~iiiv~NK~Dl~~~~----~~~~~~~~~~~~~~ 149 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E-------NNLEIIPVINKIDLPSAD----PERVKQQIEDVLGL 149 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H-------cCCCEEEEEECCCCCcCC----HHHHHHHHHHHhCC
Confidence 99899999999999999999876666655554322 1 167999999999986421 12222344444442
Q ss_pred --CcEEEecCCCCCChHHHHHHHHHHH
Q 028305 156 --IPYFETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 156 --~~~~~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
..++++||++|.|++++|++|.+.+
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 150 DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 2489999999999999999998764
No 130
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.94 E-value=5.6e-26 Score=149.92 Aligned_cols=166 Identities=20% Similarity=0.297 Sum_probs=129.5
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
++..++|+++|..||||||++++|.+... ....|+.+.+. +...+ ..+.+++||.+|+...++.|.+|+.++|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~gf~I--ktl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLGFQI--KTLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccceee--EEEEe--cceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 56799999999999999999999997663 34556665444 33333 448899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCccc--chHHHHHHHHHcCCCcEEEecCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVV--PQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
|+|+|.+++..++.....+..+.. .....+.|+++++||.|+.++-.... ..-+...+++.. ..+++.+|+.+|
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~---eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~-~~~l~~cs~~tg 163 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLV---EERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSH-HWRLVKCSAVTG 163 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHh---hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhcccc-CceEEEEecccc
Confidence 999999999888887666666554 22233679999999999985432221 112334444433 488999999999
Q ss_pred CChHHHHHHHHHHHHhc
Q 028305 167 CNIDEAFLCVAEIALKN 183 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~~ 183 (210)
+++.+.++|++..+.+.
T Consensus 164 e~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 164 EDLLEGIDWLCDDLMSR 180 (185)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999999999873
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=4.6e-26 Score=159.52 Aligned_cols=160 Identities=20% Similarity=0.118 Sum_probs=111.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccc----ccccccc---ccCCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERF----QSLGSAF---YRGAD 86 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~---~~~~d 86 (210)
+|+++|.+|+|||||+++|.+........+..+.......+...+ ...+.+|||||..+. ..+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999986554322222233333333333333 247999999996421 1222222 44699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCC
Q 028305 87 CCVLVYDVNVQ-KTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKE 165 (210)
Q Consensus 87 ~vi~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (210)
++++|+|++++ .+++.+..|...+...... ..++|+++|+||+|+.+. ....+....+.......+++++|+++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~--~~~~p~ivv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~ 155 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPE--LLEKPRIVVLNKIDLLDE---EELFELLKELLKELWGKPVFPISALT 155 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCcc--ccccccEEEEEchhcCCc---hhhHHHHHHHHhhCCCCCEEEEecCC
Confidence 99999999999 7888888888888765321 126799999999998653 22233444445443347899999999
Q ss_pred CCChHHHHHHHHHH
Q 028305 166 DCNIDEAFLCVAEI 179 (210)
Q Consensus 166 ~~~v~~~~~~l~~~ 179 (210)
+.|++++|+++.+.
T Consensus 156 ~~gi~~l~~~i~~~ 169 (170)
T cd01898 156 GEGLDELLRKLAEL 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999875
No 132
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=1.6e-25 Score=170.58 Aligned_cols=168 Identities=20% Similarity=0.128 Sum_probs=122.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc-------cccccccccc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER-------FQSLGSAFYR 83 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~ 83 (210)
-...|+|+|.||||||||+++|.+........+.++..+....+.+.+ ...+.+||+||..+ +.......++
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 346799999999999999999997654433344555566556565532 24689999999642 1122233456
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecC
Q 028305 84 GADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSA 163 (210)
Q Consensus 84 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (210)
.++++++|+|+++.++++.+..|..++..+... ..++|+++|+||+|+.+. .....+....++...+ .+++++||
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~--L~~kp~IIV~NKiDL~~~--~~~~~~~~~~~~~~~~-~~i~~iSA 310 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPE--LADKPRILVLNKIDLLDE--EEEREKRAALELAALG-GPVFLISA 310 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhh--cccCCeEEEEECcccCCc--hhHHHHHHHHHHHhcC-CCEEEEEc
Confidence 799999999999888899988998888766332 126799999999999754 2223333444444444 78999999
Q ss_pred CCCCChHHHHHHHHHHHHhcc
Q 028305 164 KEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~~~~~~~ 184 (210)
+++.|+++++++|.+.+.+..
T Consensus 311 ktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 311 VTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred CCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999887643
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=3.8e-26 Score=160.39 Aligned_cols=159 Identities=23% Similarity=0.377 Sum_probs=115.7
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
+....++|+++|++|+|||||++++.+..+. .+.++.+... ..+..++ ..+.+||++|+..+...+..+++.+|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 3456899999999999999999999987654 2344444332 3334444 678999999998888888888899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc----CCCcEEEecC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR----GNIPYFETSA 163 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa 163 (210)
+++|+|+++..++.....++..+..... ..++|+++++||+|+.... ..+++....... ....++++||
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~----~~~~i~~~l~~~~~~~~~~~~~~~Sa 157 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEK---LAGVPVLVFANKQDLATAA----PAEEIAEALNLHDLRDRTWHIQACSA 157 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECCCCccCC----CHHHHHHHcCCcccCCCeEEEEEeEC
Confidence 9999999998888877777666654321 2268999999999986532 112222111111 1124789999
Q ss_pred CCCCChHHHHHHHHH
Q 028305 164 KEDCNIDEAFLCVAE 178 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~ 178 (210)
++|.|++++|++|++
T Consensus 158 ~~~~gi~~~~~~l~~ 172 (173)
T cd04155 158 KTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999975
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=4.2e-25 Score=152.46 Aligned_cols=158 Identities=30% Similarity=0.511 Sum_probs=126.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
++||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+.++...+....+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999998887777777888787777677777778899999999998888888888899999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 92 YDVNVQ-KTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 92 ~d~~~~-~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
+|.... .++.... .|...+...... +.|+++++||+|+.... ............+..+++++||++|.|+
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~sa~~~~gv 152 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAES----NVPIILVGNKIDLRDAK----LKTHVAFLFAKLNGEPIIPLSAETGKNI 152 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhccc----CCcEEEEEEcccCCcch----hhHHHHHHHhhccCCceEEeecCCCCCH
Confidence 999877 6666654 666666655432 67999999999997532 2333334444455578999999999999
Q ss_pred HHHHHHHH
Q 028305 170 DEAFLCVA 177 (210)
Q Consensus 170 ~~~~~~l~ 177 (210)
.+++++|.
T Consensus 153 ~~~~~~l~ 160 (161)
T TIGR00231 153 DSAFKIVE 160 (161)
T ss_pred HHHHHHhh
Confidence 99999863
No 135
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.94 E-value=7.3e-26 Score=153.96 Aligned_cols=135 Identities=23% Similarity=0.294 Sum_probs=98.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcc-----cccccccccccCCcEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE-----RFQSLGSAFYRGADCC 88 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~v 88 (210)
||+++|++|+|||||+++|.+..+. +.++.+.++ . -.+|||||+. .+.... ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------N-----DGAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------c-----CeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 8999999999999999999977652 223332222 1 1589999972 223222 347899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||++++.++.. ..|...+ ..|+++|+||+|+.+ .....++...+++..+..+++++||++|.|
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~----------~~p~ilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 132 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF----------VKPVIGLVTKIDLAE---ADVDIERAKELLETAGAEPIFEISSVDEQG 132 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc----------cCCeEEEEEeeccCC---cccCHHHHHHHHHHcCCCcEEEEecCCCCC
Confidence 99999999988754 2333221 239999999999864 233456667777776645899999999999
Q ss_pred hHHHHHHHH
Q 028305 169 IDEAFLCVA 177 (210)
Q Consensus 169 v~~~~~~l~ 177 (210)
++++|+++.
T Consensus 133 i~~l~~~l~ 141 (142)
T TIGR02528 133 LEALVDYLN 141 (142)
T ss_pred HHHHHHHHh
Confidence 999999874
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=2.1e-25 Score=160.63 Aligned_cols=158 Identities=23% Similarity=0.211 Sum_probs=111.5
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccc---------ccccc
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERF---------QSLGS 79 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~ 79 (210)
++..++|+|+|++|||||||++++.+..+.....+..+.+.....+.+.+. ..+.+|||||..+. ... .
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~ 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-L 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-H
Confidence 355689999999999999999999987654333333334444444444442 36999999997321 111 1
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEE
Q 028305 80 AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYF 159 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
..+..+|++++|+|++++.++.....|...+..... .++|+++|+||+|+.+... . ...... ...+++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~----~~~~viiV~NK~Dl~~~~~--~-----~~~~~~-~~~~~~ 183 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA----EDIPMILVLNKIDLLDDEE--L-----EERLEA-GRPDAV 183 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc----CCCCEEEEEEccccCChHH--H-----HHHhhc-CCCceE
Confidence 225679999999999998888777666666654322 2679999999999965421 1 122333 347899
Q ss_pred EecCCCCCChHHHHHHHHHHH
Q 028305 160 ETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 160 ~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
++||++|.|+++++++|.+.+
T Consensus 184 ~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 184 FISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred EEEcCCCCCHHHHHHHHHhhC
Confidence 999999999999999998753
No 137
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=8.4e-25 Score=163.52 Aligned_cols=167 Identities=18% Similarity=0.102 Sum_probs=112.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCC-cccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc--------cccccccC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQ-QYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQS--------LGSAFYRG 84 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~ 84 (210)
+|+++|.||+|||||+|+|++..... ...+.++..........++ .++.+|||||...... ....+++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999877542 2223333333333322233 5699999999654311 12345788
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCC
Q 028305 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK 164 (210)
Q Consensus 85 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (210)
+|++++|+|.++..+.+ ..+...+... +.|+++|+||+|+.+. ....+....+....+..+++++||+
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~~-------~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~v~~iSA~ 147 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQNL-------KRPVVLTRNKLDNKFK---DKLLPLIDKYAILEDFKDIVPISAL 147 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHhc-------CCCEEEEEECeeCCCH---HHHHHHHHHHHhhcCCCceEEEecC
Confidence 99999999999876654 2333333321 6799999999999642 2223344444444443479999999
Q ss_pred CCCChHHHHHHHHHHHHhcccccccCCCCCcce
Q 028305 165 EDCNIDEAFLCVAEIALKNEHKDIYYQPQGISE 197 (210)
Q Consensus 165 ~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (210)
+|.|++++++++.+.+..... .++++..+.
T Consensus 148 ~g~gi~~L~~~l~~~l~~~~~---~~~~~~~t~ 177 (270)
T TIGR00436 148 TGDNTSFLAAFIEVHLPEGPF---RYPEDYVTD 177 (270)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CCCCcccCC
Confidence 999999999999988755433 455555444
No 138
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=5.3e-24 Score=154.98 Aligned_cols=170 Identities=36% Similarity=0.544 Sum_probs=135.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
.+||+++|+.|+|||||+++|..+.+...+.++.+..+........+..+.+.+|||+|++++...+..++..+++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 49999999999999999999999999988888887777777776666578999999999999999999999999999999
Q ss_pred EECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC----------cccchHHHHHHHHHc--CCCcE
Q 028305 92 YDVNV-QKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS----------RVVPQKKALEWCAYR--GNIPY 158 (210)
Q Consensus 92 ~d~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~----------~~~~~~~~~~~~~~~--~~~~~ 158 (210)
+|..+ ..+++....|...+..... .+.|+++|+||+|+..... +.............. ....+
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~----~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAP----DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPAL 160 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCC----CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccce
Confidence 99999 4555666788888877653 2679999999999976532 112222222222222 22449
Q ss_pred EEecCC--CCCChHHHHHHHHHHHHhccc
Q 028305 159 FETSAK--EDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 159 ~~~Sa~--~~~~v~~~~~~l~~~~~~~~~ 185 (210)
+++|++ .+.++.++|..+...+.+...
T Consensus 161 ~~~s~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 161 LETSAKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred eEeecccCCCcCHHHHHHHHHHHHHHhhh
Confidence 999999 999999999999999976544
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=2e-24 Score=150.83 Aligned_cols=159 Identities=21% Similarity=0.234 Sum_probs=109.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD-DKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
.|+++|++|+|||||+++|....+.....++.+.+.....+..+ +....+.+|||||+..+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887765544445444433444433 13567999999999888888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHH-----HcCCCcEEEecCCCCC
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCA-----YRGNIPYFETSAKEDC 167 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 167 (210)
|+++........ .+..+.. .++|+++|+||+|+..... ....+....... .....+++++|+++|.
T Consensus 82 d~~~~~~~~~~~-~~~~~~~-------~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA-------ANVPFIVALNKIDKPNANP-ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE 152 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH-------cCCCEEEEEEceecccccH-HHHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence 998753222211 1122222 1679999999999874321 111112211111 1123689999999999
Q ss_pred ChHHHHHHHHHHHH
Q 028305 168 NIDEAFLCVAEIAL 181 (210)
Q Consensus 168 ~v~~~~~~l~~~~~ 181 (210)
|+++++++|.+...
T Consensus 153 gi~~l~~~l~~~~~ 166 (168)
T cd01887 153 GIDDLLEAILLLAE 166 (168)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999987653
No 140
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=3.6e-25 Score=149.90 Aligned_cols=148 Identities=18% Similarity=0.245 Sum_probs=106.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc------ccccccc--cC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ------SLGSAFY--RG 84 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~--~~ 84 (210)
++|+++|.||+|||||+|+|++........|+++.+.....+.+.+ ..+.++|+||--.+. .....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999887767788888888888888877 568888999933222 1122233 57
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCC
Q 028305 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK 164 (210)
Q Consensus 85 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (210)
.|++++|+|.++.+.-.. ...++... ++|+++|+||+|+.......+ +...+.+..+ ++++++||+
T Consensus 79 ~D~ii~VvDa~~l~r~l~---l~~ql~e~-------g~P~vvvlN~~D~a~~~g~~i---d~~~Ls~~Lg-~pvi~~sa~ 144 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY---LTLQLLEL-------GIPVVVVLNKMDEAERKGIEI---DAEKLSERLG-VPVIPVSAR 144 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH---HHHHHHHT-------TSSEEEEEETHHHHHHTTEEE----HHHHHHHHT-S-EEEEBTT
T ss_pred CCEEEEECCCCCHHHHHH---HHHHHHHc-------CCCEEEEEeCHHHHHHcCCEE---CHHHHHHHhC-CCEEEEEeC
Confidence 899999999987543322 33333332 789999999999865322223 3455566667 899999999
Q ss_pred CCCChHHHHHHH
Q 028305 165 EDCNIDEAFLCV 176 (210)
Q Consensus 165 ~~~~v~~~~~~l 176 (210)
++.|++++++.|
T Consensus 145 ~~~g~~~L~~~I 156 (156)
T PF02421_consen 145 TGEGIDELKDAI 156 (156)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHhhC
Confidence 999999999875
No 141
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.93 E-value=2.8e-24 Score=148.65 Aligned_cols=148 Identities=22% Similarity=0.240 Sum_probs=107.9
Q ss_pred EEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc------ccccc--cCCcEE
Q 028305 17 VLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL------GSAFY--RGADCC 88 (210)
Q Consensus 17 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~v 88 (210)
|+|.+|+|||||++++.+......+.++.+.+.....+.+++ ..+.+|||||+..+... ...++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765544455666666566666665 56899999998765542 34445 489999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|+|.+++.... .+...+... ++|+++|+||+|+..... ...+...+....+ .+++++|+.+|.|
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~~-------~~~~iiv~NK~Dl~~~~~---~~~~~~~~~~~~~-~~~~~iSa~~~~~ 144 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLEL-------GLPVVVALNMIDEAEKRG---IKIDLDKLSELLG-VPVVPTSARKGEG 144 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHHc-------CCCEEEEEehhhhccccc---chhhHHHHHHhhC-CCeEEEEccCCCC
Confidence 9999998865432 333333321 679999999999975421 1223345555555 7899999999999
Q ss_pred hHHHHHHHHHHH
Q 028305 169 IDEAFLCVAEIA 180 (210)
Q Consensus 169 v~~~~~~l~~~~ 180 (210)
+.++++++.+.+
T Consensus 145 ~~~l~~~l~~~~ 156 (158)
T cd01879 145 IDELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 142
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=4.8e-24 Score=162.47 Aligned_cols=163 Identities=21% Similarity=0.146 Sum_probs=117.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc----ccccc---ccc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ----SLGSA---FYR 83 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~~~---~~~ 83 (210)
-...|+|+|.||||||||+++|..........+.++.......+.+++ ...+.+||+||..+-. .+... .+.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 356899999999999999999997654333333444555555555543 3568999999964321 22233 345
Q ss_pred CCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 84 GADCCVLVYDVNVQ---KTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 84 ~~d~vi~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
.++++++|+|+++. ++++.+..|..++..+... ..+.|+++|+||+|+.+. ....+....+.+..+ .++++
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~--l~~kp~IIV~NK~DL~~~---~~~~~~~~~l~~~~~-~~vi~ 308 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPE--LAEKPRIVVLNKIDLLDE---EELAELLKELKKALG-KPVFP 308 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhh--hccCCEEEEEeCccCCCh---HHHHHHHHHHHHHcC-CcEEE
Confidence 69999999999986 6778888888877665321 126799999999999754 222344455555555 78999
Q ss_pred ecCCCCCChHHHHHHHHHHH
Q 028305 161 TSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~~ 180 (210)
+||+++.|+++++++|.+.+
T Consensus 309 iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 309 ISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEccCCcCHHHHHHHHHHHh
Confidence 99999999999999998764
No 143
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=5.7e-24 Score=163.22 Aligned_cols=170 Identities=21% Similarity=0.265 Sum_probs=115.9
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCC-cccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccc-cccc-------c
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQ-QYKATIGADFVTKELQMDDKLVTLQIWDTAGQERF-QSLG-------S 79 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~-------~ 79 (210)
+++.++|+++|.+|+|||||+|+|++..+.. ...+.++.+.....+..++ .++.+|||||..+. ..+. .
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 4567899999999999999999999887652 1222333444444555555 46899999997432 2221 1
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcC-CCc
Q 028305 80 AFYRGADCCVLVYDVNVQKTFESLQN-WREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRG-NIP 157 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~-~~~ 157 (210)
..+..+|++++|+|..+ ++..... |+..+... +.|.++|+||+|+.+. ...++...+.... ...
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~-------~~p~IlViNKiDl~~~-----~~~~~~~~l~~~~~~~~ 192 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL-------NIVPIFLLNKIDIESK-----YLNDIKAFLTENHPDSL 192 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc-------CCCEEEEEEhhcCccc-----cHHHHHHHHHhcCCCcE
Confidence 23678999999999765 3444433 33343322 4577899999998642 1344445544433 357
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhcccccccCCCCCcce
Q 028305 158 YFETSAKEDCNIDEAFLCVAEIALKNEHKDIYYQPQGISE 197 (210)
Q Consensus 158 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (210)
++++||++|.|++++|++|.+.+....+ .|+++..|.
T Consensus 193 i~~iSAktg~gv~eL~~~L~~~l~~~~~---~~~~~~~td 229 (339)
T PRK15494 193 LFPISALSGKNIDGLLEYITSKAKISPW---LYAEDDITD 229 (339)
T ss_pred EEEEeccCccCHHHHHHHHHHhCCCCCC---CCCCCCCCC
Confidence 9999999999999999999988876654 666666554
No 144
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.92 E-value=2.3e-24 Score=153.74 Aligned_cols=161 Identities=20% Similarity=0.117 Sum_probs=104.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC----cCC---CcccceeeeEEEEEEEEeC------------CeEEEEEEEeCCCccc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN----KFS---QQYKATIGADFVTKELQMD------------DKLVTLQIWDTAGQER 73 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~----~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~g~~~ 73 (210)
++|+++|++|+|||||+++|+.. .+. ....++.+.+.......+. +....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 111 1122233333333223222 3357899999999876
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHH-H
Q 028305 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCA-Y 152 (210)
Q Consensus 74 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~-~ 152 (210)
+........+.+|++++|+|.++.........+. +.... ++|+++|+||+|+..........++...... .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL------CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 6554445566789999999998754433322221 11111 5699999999998743222222333332211 1
Q ss_pred -----cCCCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 153 -----RGNIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 153 -----~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
....+++++||++|.|+++++++|.+.+.
T Consensus 153 ~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 153 LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 23478999999999999999999988765
No 145
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=4.8e-24 Score=170.67 Aligned_cols=166 Identities=22% Similarity=0.194 Sum_probs=117.9
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc----------ccccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER----------FQSLG 78 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~ 78 (210)
...++|+++|.+|+|||||+++|++.... ....++++.+.....+..++. .+.+|||||..+ +....
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence 35799999999999999999999987653 345566666666666777664 467999999532 11111
Q ss_pred -cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCc
Q 028305 79 -SAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIP 157 (210)
Q Consensus 79 -~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
..+++.+|++++|+|++++.++..+. ++..+.. .++|+++|+||+|+.+........+++..........+
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~-------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~ 358 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE-------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAP 358 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCC
Confidence 23568899999999999987777653 3333332 16799999999999753222222233333222233478
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 158 YFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 158 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
++++||++|.|++++|+.+.+.+.+...
T Consensus 359 ~~~~SAk~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 359 RVNISAKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988765544
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=1.4e-23 Score=143.75 Aligned_cols=154 Identities=47% Similarity=0.767 Sum_probs=117.5
Q ss_pred EEcCCCCcHHHHHHHHhhCcC-CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECC
Q 028305 17 VLGDSGVGKTSLMNQYVYNKF-SQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVN 95 (210)
Q Consensus 17 v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~ 95 (210)
++|++|+|||||++++.+... .....++. .+..............+.+||+||...+.......++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998777 44444454 6676777777777889999999998888877788889999999999999
Q ss_pred ChhhHHHHHHHHHHHH-HhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHH
Q 028305 96 VQKTFESLQNWREEFL-KQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFL 174 (210)
Q Consensus 96 ~~~s~~~~~~~~~~l~-~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 174 (210)
++.+......|+.... .... .++|+++|+||+|+..... ................+++++|+.++.|++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~----~~~~~ivv~nk~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 153 (157)
T cd00882 80 DRESFENVKEWLLLILINKEG----ENIPIILVGNKIDLPEERV--VSEEELAEQLAKELGVPYFETSAKTGENVEELFE 153 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhcc----CCCcEEEEEeccccccccc--hHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHH
Confidence 9988888877632222 2222 2789999999999975421 1111112233344458999999999999999999
Q ss_pred HHH
Q 028305 175 CVA 177 (210)
Q Consensus 175 ~l~ 177 (210)
+|.
T Consensus 154 ~l~ 156 (157)
T cd00882 154 ELA 156 (157)
T ss_pred HHh
Confidence 986
No 147
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=3.1e-24 Score=153.28 Aligned_cols=162 Identities=15% Similarity=0.160 Sum_probs=109.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh--CcCCCcc------------cceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY--NKFSQQY------------KATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG 78 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (210)
.+|+++|.+++|||||+++|+. +.+.... ..+.+.+.......++.....+.+|||||++++....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999997 4443322 1122333333334444456789999999999999999
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc-----
Q 028305 79 SAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR----- 153 (210)
Q Consensus 79 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~----- 153 (210)
..+++.+|++++|+|+++.. +.....++..+.. .++|+++|+||+|+.... .....++...+....
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-------~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 153 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-------LGLKPIVVINKIDRPDAR-PEEVVDEVFDLFIELGATEE 153 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHHhCCccc
Confidence 99999999999999998742 2222233333322 167999999999996532 222344444444322
Q ss_pred -CCCcEEEecCCCCCChHHH------HHHHHHHHHhc
Q 028305 154 -GNIPYFETSAKEDCNIDEA------FLCVAEIALKN 183 (210)
Q Consensus 154 -~~~~~~~~Sa~~~~~v~~~------~~~l~~~~~~~ 183 (210)
...+++++||++|.|+.++ +++|++++.++
T Consensus 154 ~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~ 190 (194)
T cd01891 154 QLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEH 190 (194)
T ss_pred cCccCEEEeehhccccccccccchhhHHHHHHHHHhc
Confidence 1368999999999888544 44555555544
No 148
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=7e-24 Score=162.94 Aligned_cols=155 Identities=23% Similarity=0.188 Sum_probs=111.9
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc---------ccccccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER---------FQSLGSA 80 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~ 80 (210)
...++|+++|.+|+|||||+|+|++........++.+.++....+.+.+. ..+.+|||+|..+ +.. ...
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~-tle 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRA-TLE 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHH-HHH
Confidence 45689999999999999999999987654444455556666666666432 4789999999721 211 122
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 81 FYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 81 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
.+.++|++++|+|++++.+.+.+..|...+..... .+.|+++|+||+|+.+. . +..... . ...++++
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~----~~~piIlV~NK~Dl~~~--~-----~v~~~~-~-~~~~~i~ 331 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGA----EDIPQLLVYNKIDLLDE--P-----RIERLE-E-GYPEAVF 331 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc----CCCCEEEEEEeecCCCh--H-----hHHHHH-h-CCCCEEE
Confidence 46789999999999999888777666555544322 26799999999998642 1 111111 1 2246899
Q ss_pred ecCCCCCChHHHHHHHHHH
Q 028305 161 TSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~ 179 (210)
+||++|.|+++++++|.+.
T Consensus 332 iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 332 VSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EEccCCCCHHHHHHHHHhh
Confidence 9999999999999998764
No 149
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=2.7e-24 Score=154.56 Aligned_cols=156 Identities=17% Similarity=0.109 Sum_probs=102.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCC-----------cccccccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG-----------QERFQSLG 78 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~ 78 (210)
...++|+++|.+|+|||||+++|.+..+.....++.+... ..+... .+.+||||| ++.+...+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKP--NHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCc--eEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 4568999999999999999999998877655555554433 223322 489999999 34454444
Q ss_pred cccc----cCCcEEEEEEECCChhhHH----------HHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchH
Q 028305 79 SAFY----RGADCCVLVYDVNVQKTFE----------SLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK 144 (210)
Q Consensus 79 ~~~~----~~~d~vi~v~d~~~~~s~~----------~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~ 144 (210)
..++ ..++++++|+|.+...... ........+.. .++|+++|+||+|+.+.. .+
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~p~iiv~NK~Dl~~~~-----~~ 148 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-------LGIPPIVAVNKMDKIKNR-----DE 148 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-------cCCCeEEEEECccccCcH-----HH
Confidence 4444 3457888888876432110 00111122211 178999999999986531 23
Q ss_pred HHHHHHHHcCC--------CcEEEecCCCCCChHHHHHHHHHHHHhcc
Q 028305 145 KALEWCAYRGN--------IPYFETSAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 145 ~~~~~~~~~~~--------~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
...++.+..+. .+++++||++| |+++++++|.+.+.+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 149 VLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 34444444441 25899999999 99999999999875543
No 150
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.92 E-value=7.8e-25 Score=141.95 Aligned_cols=164 Identities=26% Similarity=0.391 Sum_probs=128.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
..+.+.++|-.+||||||+|....+.+...-.|+.+...+ .+....+.+.+||.||+..++.+++.|.+.+++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 4678999999999999999999988888888888876554 344567899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|+|..+++.++....-+..+. ......++|+++.+||.|+.++.......++.-...-..+.+.++.+|+++..|++
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL---~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid 171 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLL---DKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNID 171 (186)
T ss_pred EeecCCcccchhhHHHHHHHh---cchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHH
Confidence 999999988777655444443 33344489999999999998764322222222212222234779999999999999
Q ss_pred HHHHHHHHHHH
Q 028305 171 EAFLCVAEIAL 181 (210)
Q Consensus 171 ~~~~~l~~~~~ 181 (210)
-+.+||++..-
T Consensus 172 ~~~~Wli~hsk 182 (186)
T KOG0075|consen 172 ITLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHHhh
Confidence 99999988653
No 151
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.92 E-value=9.9e-24 Score=150.04 Aligned_cols=157 Identities=20% Similarity=0.146 Sum_probs=112.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccc----------------eeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKA----------------TIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL 77 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (210)
+|+|+|.+|+|||||+++|++......... +.+........... ...+.+|||||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 489999999999999999997766543211 12222222233333 467999999999888888
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc----
Q 028305 78 GSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR---- 153 (210)
Q Consensus 78 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~---- 153 (210)
+..+++.+|++++|+|.+++...... .++..+.. .+.|+++|+||+|+..........+......+..
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~-------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE-------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIS 150 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH-------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccc
Confidence 88888999999999999876544332 33333322 1679999999999976332333344444444432
Q ss_pred ---------CCCcEEEecCCCCCChHHHHHHHHHHH
Q 028305 154 ---------GNIPYFETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 154 ---------~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
...+++++||++|.|+++++.++.+.+
T Consensus 151 ~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 151 TKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 247899999999999999999999886
No 152
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1e-23 Score=142.80 Aligned_cols=167 Identities=20% Similarity=0.313 Sum_probs=128.4
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
-.....+|+++|-.++||||++++|..+..... .||.+.......+ . ++.+.+||.+|+++++.++..|+++.++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y--k--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY--K--NISFTVWDVGGQEKLRPLWKHYFQNTQG 87 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE--c--ceEEEEEecCCCcccccchhhhccCCcE
Confidence 356789999999999999999999987776644 7777766554444 3 5889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcc-cchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRV-VPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
+|||+|.++++.+......+..+... ....+.|+++++||.|+.++.... +.......-... ....+..++|.+|
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~---~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~-~~w~iq~~~a~~G 163 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAE---PELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS-RNWHIQSTCAISG 163 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcC---cccCCceEEEEechhhccccCCHHHHHhHhhhhccCC-CCcEEeecccccc
Confidence 99999999998888766555555443 334588999999999998764311 111111111111 2356888999999
Q ss_pred CChHHHHHHHHHHHHhc
Q 028305 167 CNIDEAFLCVAEIALKN 183 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~~ 183 (210)
+|+.+.++++.+.+.+.
T Consensus 164 ~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 164 EGLYEGLDWLSNNLKKR 180 (181)
T ss_pred ccHHHHHHHHHHHHhcc
Confidence 99999999999887653
No 153
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=4.9e-23 Score=162.53 Aligned_cols=154 Identities=20% Similarity=0.233 Sum_probs=116.0
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc--------ccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL--------GSA 80 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 80 (210)
...++|+++|++|+|||||+|+|++.... ....++++.++....+.+++ ..+.+|||||..++... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 45689999999999999999999986532 33456667777777777776 55789999997654332 235
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 81 FYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 81 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
+++.+|++++|+|++++.+++.. |+..+.. .++|+++|+||+|+... ....+.+..+ .++++
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-------~~~piIlV~NK~Dl~~~--------~~~~~~~~~~-~~~~~ 340 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK-------SKKPFILVLNKIDLKIN--------SLEFFVSSKV-LNSSN 340 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh-------CCCCEEEEEECccCCCc--------chhhhhhhcC-CceEE
Confidence 67889999999999998877654 5554432 16799999999998642 1123344444 67899
Q ss_pred ecCCCCCChHHHHHHHHHHHHhcc
Q 028305 161 TSAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
+|+++ .|++++|+.+.+.+.+..
T Consensus 341 vSak~-~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKINAFY 363 (442)
T ss_pred EEEec-CCHHHHHHHHHHHHHHHh
Confidence 99998 699999999999887653
No 154
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=3.9e-23 Score=164.44 Aligned_cols=165 Identities=21% Similarity=0.195 Sum_probs=113.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc----------
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG---------- 78 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---------- 78 (210)
...++|+++|.+|+|||||+++|++.... ....++++.+.....+..++. .+.+|||||..+.....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 45699999999999999999999976532 233445555555555555553 68899999975443221
Q ss_pred -cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC-CCcccchHHHHHHHHHcCCC
Q 028305 79 -SAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG-SSRVVPQKKALEWCAYRGNI 156 (210)
Q Consensus 79 -~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~ 156 (210)
...++.+|++++|+|++++.+..... ++..+... +.|+++|+||+|+... .........+.......+..
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~-------~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 319 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILEA-------GKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFA 319 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc-------CCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCC
Confidence 23578899999999999876665542 33333221 6799999999999721 11111222222222223447
Q ss_pred cEEEecCCCCCChHHHHHHHHHHHHhcc
Q 028305 157 PYFETSAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 157 ~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
+++++||++|.|++++|+++.+.+....
T Consensus 320 ~vi~~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 320 PIVFISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999999998776543
No 155
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=8.6e-23 Score=140.90 Aligned_cols=146 Identities=23% Similarity=0.270 Sum_probs=105.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc--------cccccc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL--------GSAFYR 83 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 83 (210)
++|+++|++|+|||||++++.+.... ....++.+.+........++ ..+.+|||||..++... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999977643 12234444445444555544 56899999997654322 224567
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecC
Q 028305 84 GADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSA 163 (210)
Q Consensus 84 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (210)
.+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .. .....+++++||
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~----------~~~~~vi~v~nK~D~~~~~~~---------~~-~~~~~~~~~~Sa 139 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL----------PADKPIIVVLNKSDLLPDSEL---------LS-LLAGKPIIAISA 139 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh----------hcCCCEEEEEEchhcCCcccc---------cc-ccCCCceEEEEC
Confidence 8999999999998777666544332 116799999999999764211 22 223478999999
Q ss_pred CCCCChHHHHHHHHHHH
Q 028305 164 KEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~~~ 180 (210)
+++.|+++++++|.+.+
T Consensus 140 ~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 140 KTGEGLDELKEALLELA 156 (157)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999988753
No 156
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.6e-22 Score=157.86 Aligned_cols=164 Identities=21% Similarity=0.178 Sum_probs=117.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc----cccccccc---ccC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER----FQSLGSAF---YRG 84 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~ 84 (210)
...|+|+|.||||||||+++|++........+.++..+....+.+++ ...+.+||+||..+ ...+...+ +..
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 34899999999999999999997664433334445555545454431 35699999999642 11222333 456
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEe
Q 028305 85 ADCCVLVYDVNVQ---KTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 85 ~d~vi~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
++++++|+|+++. +.++....|...+..+... ..++|+++|+||+|+... .+....+.+..+ .+++++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~--L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~-~~i~~i 307 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPR--LLERPQIVVANKMDLPEA------EENLEEFKEKLG-PKVFPI 307 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchh--ccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC-CcEEEE
Confidence 8999999999865 5677777787777765321 126799999999998432 234455555555 789999
Q ss_pred cCCCCCChHHHHHHHHHHHHhccc
Q 028305 162 SAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
||+++.|+++++++|.+.+.+...
T Consensus 308 SA~tgeGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 308 SALTGQGLDELLYAVAELLEETPE 331 (424)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999998876543
No 157
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.91 E-value=2.6e-23 Score=137.14 Aligned_cols=114 Identities=36% Similarity=0.563 Sum_probs=86.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCC--CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFS--QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
||+|+|++|||||||+++|++..+. ..+....+................+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988876 12222233344444556666777799999999998888777779999999999
Q ss_pred EECCChhhHHHHHHH---HHHHHHhcCCCCCCCCCEEEEEecCC
Q 028305 92 YDVNVQKTFESLQNW---REEFLKQADPGEHEACPFVLLGNKID 132 (210)
Q Consensus 92 ~d~~~~~s~~~~~~~---~~~l~~~~~~~~~~~~p~ilv~~K~D 132 (210)
||++++.+++.+..+ +..+..... ++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-----~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDK-----NIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSS-----CSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCC-----CCCEEEEEeccC
Confidence 999999999887554 555544322 689999999998
No 158
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.90 E-value=1.1e-22 Score=165.74 Aligned_cols=160 Identities=21% Similarity=0.165 Sum_probs=120.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC---cCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN---KFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
+.|+++|++++|||||+++|.+. .+..+...+.+.+.....+...+ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 47999999999999999999963 34444556667777666666655 77999999999999888888899999999
Q ss_pred EEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCC-EEEEEecCCCCCCCCcccchHHHHHHHHHcC---CCcEEEec
Q 028305 90 LVYDVNVQ---KTFESLQNWREEFLKQADPGEHEACP-FVLLGNKIDTDGGSSRVVPQKKALEWCAYRG---NIPYFETS 162 (210)
Q Consensus 90 ~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~S 162 (210)
+|+|+++. .+.+.+. .+. .. ++| +++|+||+|+.+........+++..++...+ ..+++++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~-~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS 147 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLD-LL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTS 147 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHH-Hc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence 99999983 3433321 121 11 667 9999999999764222234456666665543 47899999
Q ss_pred CCCCCChHHHHHHHHHHHHhccc
Q 028305 163 AKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 163 a~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
|++|.|+++++..+.+.+.....
T Consensus 148 A~tG~GI~eL~~~L~~l~~~~~~ 170 (581)
T TIGR00475 148 AKTGQGIGELKKELKNLLESLDI 170 (581)
T ss_pred CCCCCCchhHHHHHHHHHHhCCC
Confidence 99999999999999887765543
No 159
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.4e-22 Score=157.39 Aligned_cols=167 Identities=17% Similarity=0.047 Sum_probs=117.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc-------ccccccccC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ-------SLGSAFYRG 84 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~ 84 (210)
...|+|+|.||||||||+|+|++........+.++.......+...+ ...+.++||||..+-. ......+..
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 34799999999999999999997765444445555555555555543 2458999999964311 112234678
Q ss_pred CcEEEEEEECC---ChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCC-CcEEE
Q 028305 85 ADCCVLVYDVN---VQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGN-IPYFE 160 (210)
Q Consensus 85 ~d~vi~v~d~~---~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 160 (210)
+|++++|+|++ +.+.++....|...+..+.... .+.|+++|+||+|+.+. ....+....+.+..+. ..+++
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L--~~kP~IlVlNKiDl~~~---~el~~~l~~l~~~~~~~~~Vi~ 312 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKL--AEKPRWLVFNKIDLLDE---EEAEERAKAIVEALGWEGPVYL 312 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhh--cCCCEEEEEeCCccCCh---HHHHHHHHHHHHHhCCCCCEEE
Confidence 99999999998 4556677777777776543211 15799999999998653 2223344444444332 37899
Q ss_pred ecCCCCCChHHHHHHHHHHHHhcc
Q 028305 161 TSAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
+||+++.|++++++.|.+.+.+..
T Consensus 313 ISA~tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 313 ISAASGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred EECCCCcCHHHHHHHHHHHhhhCc
Confidence 999999999999999999887653
No 160
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=1.1e-22 Score=142.68 Aligned_cols=157 Identities=22% Similarity=0.199 Sum_probs=103.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc-----------ccc
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQS-----------LGS 79 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 79 (210)
+++|+++|++|+|||||+++|++.... ....++.+.......+..++ ..+.+|||||..+... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 679999999999999999999976533 12233333344344445555 3478999999654311 012
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc---CCC
Q 028305 80 AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR---GNI 156 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~---~~~ 156 (210)
..+..+|++++|+|.+++.+.... .+...+... +.|+++++||+|+..... ....+....+.+.. ...
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~-------~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~ 150 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILEE-------GKALVIVVNKWDLVEKDS-KTMKEFKKEIRRKLPFLDYA 150 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHhc-------CCCEEEEEeccccCCccH-HHHHHHHHHHHhhcccccCC
Confidence 345689999999999988765543 222222211 679999999999975420 11111112222222 247
Q ss_pred cEEEecCCCCCChHHHHHHHHHH
Q 028305 157 PYFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 157 ~~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
+++++||+++.|++++++++.+.
T Consensus 151 ~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 151 PIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ceEEEeccCCCCHHHHHHHHHHh
Confidence 89999999999999999998764
No 161
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=3.7e-23 Score=145.50 Aligned_cols=159 Identities=22% Similarity=0.198 Sum_probs=105.5
Q ss_pred EEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccc----ccc---ccccccCCcEEE
Q 028305 17 VLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERF----QSL---GSAFYRGADCCV 89 (210)
Q Consensus 17 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~d~vi 89 (210)
++|++|||||||+++|.+........+.++.+.....+.+.+ ...+.+|||||..+. ... ....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998764222223333444444444441 356899999996421 112 123467899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHHHhcCC---CCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 90 LVYDVNVQ------KTFESLQNWREEFLKQADP---GEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 90 ~v~d~~~~------~s~~~~~~~~~~l~~~~~~---~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
+|+|.+++ .++.....|...+...... ....+.|+++|+||+|+... ............. .....+++
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~~~~~-~~~~~~~~ 156 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEELVRELAL-EEGAEVVP 156 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHHHHHHhc-CCCCCEEE
Confidence 99999988 4677777776666543210 00126799999999999754 2222211222333 23478999
Q ss_pred ecCCCCCChHHHHHHHHHH
Q 028305 161 TSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~ 179 (210)
+|++++.|++++++++.+.
T Consensus 157 ~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 157 ISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EehhhhcCHHHHHHHHHhh
Confidence 9999999999999998764
No 162
>PRK11058 GTPase HflX; Provisional
Probab=99.90 E-value=1.3e-22 Score=159.31 Aligned_cols=161 Identities=19% Similarity=0.123 Sum_probs=112.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccc--cccc------ccccc
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERF--QSLG------SAFYR 83 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~------~~~~~ 83 (210)
..+|+++|.+|+|||||+|+|.+........++.+.+.....+...+. ..+.+|||+|.... ...+ ...++
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999987655444555566666656655442 25789999997431 1112 23367
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCc-EEEec
Q 028305 84 GADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIP-YFETS 162 (210)
Q Consensus 84 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S 162 (210)
.+|++++|+|++++.+++.+..|...+..... .++|+++|+||+|+.+.. . .... ....+ .+ ++++|
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~----~~~pvIiV~NKiDL~~~~--~---~~~~--~~~~~-~~~~v~IS 343 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDA----HEIPTLLVMNKIDMLDDF--E---PRID--RDEEN-KPIRVWLS 343 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc----CCCCEEEEEEcccCCCch--h---HHHH--HHhcC-CCceEEEe
Confidence 89999999999999887776555444443322 267999999999986421 1 1111 11123 33 58899
Q ss_pred CCCCCChHHHHHHHHHHHHhccc
Q 028305 163 AKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 163 a~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
|++|.|+++++++|.+.+.....
T Consensus 344 AktG~GIdeL~e~I~~~l~~~~~ 366 (426)
T PRK11058 344 AQTGAGIPLLFQALTERLSGEVA 366 (426)
T ss_pred CCCCCCHHHHHHHHHHHhhhccE
Confidence 99999999999999999865433
No 163
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=8.2e-23 Score=162.09 Aligned_cols=149 Identities=27% Similarity=0.316 Sum_probs=112.7
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc--------cccc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL--------GSAF 81 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 81 (210)
..++|+++|.+|+|||||+|+|.+.... ....++++.++....+..++ ..+.+|||||..++... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999987642 34456666777677777766 56899999997654332 2345
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEe
Q 028305 82 YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 82 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
++.+|++++|+|.+++.+++....|.. ..+.|+++|+||+|+.+.. ... . ....+++++
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~----------~~~~piiiV~NK~DL~~~~--~~~--------~-~~~~~~i~i 350 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE----------LKDKPVIVVLNKADLTGEI--DLE--------E-ENGKPVIRI 350 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh----------cCCCCcEEEEEhhhccccc--hhh--------h-ccCCceEEE
Confidence 788999999999999877765433322 1267999999999996531 111 1 223679999
Q ss_pred cCCCCCChHHHHHHHHHHHHh
Q 028305 162 SAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
||++|.|+++++++|.+.+..
T Consensus 351 SAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 351 SAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EeeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999998865
No 164
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.90 E-value=4e-22 Score=161.81 Aligned_cols=156 Identities=21% Similarity=0.212 Sum_probs=113.1
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
.++.+|+++|++++|||||+++|.+..+.....++.+.+.....+..++. ..+.+|||||++.|..++...+..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 46789999999999999999999988877665556665555555555432 26899999999999998888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc--------CCCcEEEe
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR--------GNIPYFET 161 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 161 (210)
+|+|+++...-.....+ ..... .++|+++++||+|+.+.. .+++...+... +..+++++
T Consensus 164 LVVda~dgv~~qT~e~i-~~~~~-------~~vPiIVviNKiDl~~~~-----~e~v~~~L~~~g~~~~~~~~~~~~v~i 230 (587)
T TIGR00487 164 LVVAADDGVMPQTIEAI-SHAKA-------ANVPIIVAINKIDKPEAN-----PDRVKQELSEYGLVPEDWGGDTIFVPV 230 (587)
T ss_pred EEEECCCCCCHhHHHHH-HHHHH-------cCCCEEEEEECcccccCC-----HHHHHHHHHHhhhhHHhcCCCceEEEE
Confidence 99999874322222221 11111 178999999999986432 12222222222 13579999
Q ss_pred cCCCCCChHHHHHHHHHH
Q 028305 162 SAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~ 179 (210)
||++|.|++++++++...
T Consensus 231 SAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 231 SALTGDGIDELLDMILLQ 248 (587)
T ss_pred ECCCCCChHHHHHhhhhh
Confidence 999999999999998753
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.4e-22 Score=162.33 Aligned_cols=155 Identities=21% Similarity=0.236 Sum_probs=110.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc--------cccccccc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER--------FQSLGSAF 81 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 81 (210)
...+|+|+|.+|+|||||+|+|++.... ....++++.+.........+ ..+.+|||||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 4578999999999999999999987643 34455666666666666655 4588999999652 22334556
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEe
Q 028305 82 YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 82 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
++.+|++|+|+|+++..++.. ..+...+.. .++|+++|+||+|+.... .+ ...+. ..+...++++
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-------~~~piilV~NK~Dl~~~~-----~~-~~~~~-~~g~~~~~~i 179 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR-------SGKPVILAANKVDDERGE-----AD-AAALW-SLGLGEPHPV 179 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECccCCccc-----hh-hHHHH-hcCCCCeEEE
Confidence 789999999999998765543 233333332 167999999999986421 11 12222 2333356899
Q ss_pred cCCCCCChHHHHHHHHHHHHh
Q 028305 162 SAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
||++|.|++++|+++.+.+.+
T Consensus 180 SA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 180 SALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EcCCCCCcHHHHHHHHhhccc
Confidence 999999999999999998865
No 166
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.90 E-value=7.5e-23 Score=144.35 Aligned_cols=154 Identities=19% Similarity=0.179 Sum_probs=100.7
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcc----------ccc
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE----------RFQ 75 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~ 75 (210)
++++...++|+++|++|+|||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .+.
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence 34567889999999999999999999998754333223332222222222232 58999999943 223
Q ss_pred cccccccc---CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH
Q 028305 76 SLGSAFYR---GADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY 152 (210)
Q Consensus 76 ~~~~~~~~---~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~ 152 (210)
.....+++ .++++++|+|.+++.+.... .++..+.. .++|+++|+||+|+.+........++++..+..
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~-------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~ 160 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE-------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK 160 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh
Confidence 33334444 35899999999876554443 22233322 167999999999997543334445566666655
Q ss_pred cC-CCcEEEecCCCCCChH
Q 028305 153 RG-NIPYFETSAKEDCNID 170 (210)
Q Consensus 153 ~~-~~~~~~~Sa~~~~~v~ 170 (210)
.+ ...++++||++|+|++
T Consensus 161 ~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 161 DADDPSVQLFSSLKKTGID 179 (179)
T ss_pred ccCCCceEEEECCCCCCCC
Confidence 43 3489999999999974
No 167
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=2.4e-22 Score=152.19 Aligned_cols=172 Identities=21% Similarity=0.175 Sum_probs=112.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCc-ccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc--------cccccc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQ-YKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ--------SLGSAF 81 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~ 81 (210)
+.-.|+|+|+||||||||+|+|++...... ..+.++..........+ ...+.+|||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 456799999999999999999998776422 22222222222222222 2679999999964322 222345
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEe
Q 028305 82 YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 82 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
+..+|++++|+|+++.... ........+.. .+.|+++|+||+|+... ..........+.+..+...++++
T Consensus 82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~-------~~~pvilVlNKiDl~~~--~~~l~~~~~~l~~~~~~~~i~~i 151 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGP-GDEFILEKLKK-------VKTPVILVLNKIDLVKD--KEELLPLLEELSELMDFAEIVPI 151 (292)
T ss_pred HhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh-------cCCCEEEEEECCcCCCC--HHHHHHHHHHHHhhCCCCeEEEe
Confidence 6789999999999873221 11222222221 15799999999999742 23334445555555555789999
Q ss_pred cCCCCCChHHHHHHHHHHHHhcccccccCCCCCcce
Q 028305 162 SAKEDCNIDEAFLCVAEIALKNEHKDIYYQPQGISE 197 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (210)
||+++.|++++++++.+.+..... .++++..+.
T Consensus 152 SA~~~~gv~~L~~~L~~~l~~~~~---~y~~~~~td 184 (292)
T PRK00089 152 SALKGDNVDELLDVIAKYLPEGPP---YYPEDQITD 184 (292)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCCC---CCCCCCCCC
Confidence 999999999999999998865443 444444433
No 168
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=1.8e-22 Score=164.60 Aligned_cols=159 Identities=19% Similarity=0.199 Sum_probs=114.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCc-------CCCccc------ceeeeEEEEEE--EEe---CCeEEEEEEEeCCCcc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNK-------FSQQYK------ATIGADFVTKE--LQM---DDKLVTLQIWDTAGQE 72 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~------~~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~ 72 (210)
...+|+++|+.++|||||+++|+... +...+. ...++++.... +.+ ++..+.+.+|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 35689999999999999999998642 111111 11122232222 222 4667899999999999
Q ss_pred cccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH
Q 028305 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY 152 (210)
Q Consensus 73 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~ 152 (210)
+|...+..+++.+|++|+|+|+++..+......|+..+. .++|+++|+||+|+.+.. ..+...++.+.
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--------~~ipiIiViNKiDl~~~~----~~~~~~el~~~ 149 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--------NDLEIIPVINKIDLPSAD----PERVKKEIEEV 149 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--------cCCCEEEEEECcCCCccC----HHHHHHHHHHH
Confidence 999999999999999999999998777766666654432 167999999999986431 12222333343
Q ss_pred cCC--CcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 153 RGN--IPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 153 ~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
.+. ..++++||++|.|++++|++|.+.+.
T Consensus 150 lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 150 IGLDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred hCCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 441 24899999999999999999998764
No 169
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2.3e-22 Score=158.94 Aligned_cols=170 Identities=19% Similarity=0.118 Sum_probs=117.5
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccc----c---ccccccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERF----Q---SLGSAFY 82 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~~~~~ 82 (210)
.....|+|+|.||||||||+++|.+........+.++..+....+...+ ..+.+||+||..+- . ......+
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhi 234 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHI 234 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHH
Confidence 3457899999999999999999997655433345555666666666655 57999999995321 1 1123345
Q ss_pred cCCcEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCC-------CCCCCCEEEEEecCCCCCCCCcccchHHHHHHHH
Q 028305 83 RGADCCVLVYDVNVQ----KTFESLQNWREEFLKQADPG-------EHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCA 151 (210)
Q Consensus 83 ~~~d~vi~v~d~~~~----~s~~~~~~~~~~l~~~~~~~-------~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~ 151 (210)
..+|++|+|+|+++. +.+..+..+..++..+.... ...+.|+++|+||+|+.+. .. ..+.......
T Consensus 235 eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~e-l~e~l~~~l~ 311 (500)
T PRK12296 235 ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RE-LAEFVRPELE 311 (500)
T ss_pred HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HH-HHHHHHHHHH
Confidence 779999999999753 34555555555665543210 1226799999999999643 11 2223333333
Q ss_pred HcCCCcEEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 152 YRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
..+ .+++++||+++.|+++++.+|.+.+...+.
T Consensus 312 ~~g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 312 ARG-WPVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred HcC-CeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 444 789999999999999999999999877654
No 170
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=1.3e-22 Score=139.97 Aligned_cols=147 Identities=19% Similarity=0.143 Sum_probs=100.3
Q ss_pred EEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc--------cccccccCCc
Q 028305 16 IVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQS--------LGSAFYRGAD 86 (210)
Q Consensus 16 ~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d 86 (210)
+++|.+|+|||||+++|.+.... ....+..+.+........++ ..+.+|||||+..+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999976422 11223333334444444444 6799999999877543 3345678899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
++++|+|..++.+.... .+...+... +.|+++|+||+|+.+.. .. .......+...++++|+++|
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~-------~~piiiv~nK~D~~~~~--~~-----~~~~~~~~~~~~~~~Sa~~~ 143 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRKS-------KKPVILVVNKVDNIKEE--DE-----AAEFYSLGFGEPIPISAEHG 143 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHhc-------CCCEEEEEECcccCChH--HH-----HHHHHhcCCCCeEEEecccC
Confidence 99999999876544332 122222221 57999999999997642 11 22233445347899999999
Q ss_pred CChHHHHHHHHHH
Q 028305 167 CNIDEAFLCVAEI 179 (210)
Q Consensus 167 ~~v~~~~~~l~~~ 179 (210)
.|++++++++.+.
T Consensus 144 ~gv~~l~~~l~~~ 156 (157)
T cd01894 144 RGIGDLLDAILEL 156 (157)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999875
No 171
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.89 E-value=3.1e-22 Score=143.31 Aligned_cols=163 Identities=20% Similarity=0.168 Sum_probs=105.5
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcc----------ccc
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE----------RFQ 75 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~ 75 (210)
.+.....++|+++|.+|+|||||+++|++..+.....++.+.+........ ...+.+|||||.. .+.
T Consensus 18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHH
Confidence 344567799999999999999999999987644333333322222222222 2569999999942 233
Q ss_pred ccccccccC---CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH
Q 028305 76 SLGSAFYRG---ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY 152 (210)
Q Consensus 76 ~~~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~ 152 (210)
.....+++. .+++++++|.+++...... .+...+.. .++|+++++||+|+.+....+...+++......
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~-------~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~ 166 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE-------YGIPVLIVLTKADKLKKGERKKQLKKVRKALKF 166 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH-------cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh
Confidence 333444443 4678888998775443321 11122211 167999999999997643233333445555544
Q ss_pred cCCCcEEEecCCCCCChHHHHHHHHHHH
Q 028305 153 RGNIPYFETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
. ...++++||+++.|++++++.|.+.+
T Consensus 167 ~-~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 167 G-DDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred c-CCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4 37899999999999999999998765
No 172
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.89 E-value=5.2e-23 Score=146.23 Aligned_cols=162 Identities=20% Similarity=0.198 Sum_probs=110.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCC------------------cccceeeeEEEEEEEEeCCeEEEEEEEeCCCcc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQ------------------QYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (210)
..++|+++|+.++|||||+.+|+...... +.....+................+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 57899999999999999999998444211 011122233333333312344679999999999
Q ss_pred cccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHH-HHHH
Q 028305 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKAL-EWCA 151 (210)
Q Consensus 73 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~-~~~~ 151 (210)
+|.......+..+|++|+|+|+.+....... ..+..+... ++|+++|+||+|+.... .....+++. .+.+
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~~l~~~~~~-------~~p~ivvlNK~D~~~~~-~~~~~~~~~~~l~~ 152 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE-EHLKILREL-------GIPIIVVLNKMDLIEKE-LEEIIEEIKEKLLK 152 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-HHHHHHHHT-------T-SEEEEEETCTSSHHH-HHHHHHHHHHHHHH
T ss_pred ceeecccceecccccceeeeecccccccccc-ccccccccc-------ccceEEeeeeccchhhh-HHHHHHHHHHHhcc
Confidence 9988888889999999999999876443332 223333332 77999999999997321 112222222 4444
Q ss_pred HcC-----CCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 152 YRG-----NIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 152 ~~~-----~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
..+ .++++++||.+|.|++++++.|.+.+.
T Consensus 153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 153 EYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 443 357999999999999999999988754
No 173
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=1.9e-22 Score=144.89 Aligned_cols=163 Identities=13% Similarity=0.089 Sum_probs=102.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCC---CcccceeeeEEEEEEEEeC---------------------------C----
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFS---QQYKATIGADFVTKELQMD---------------------------D---- 58 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~---------------------------~---- 58 (210)
++|+++|+.|+|||||+..+.+.... .......+........... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47999999999999999999754211 1111111111111111100 0
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC
Q 028305 59 KLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS 138 (210)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~ 138 (210)
....+.+|||||++.+.......+..+|++++|+|++++.........+..+... . ..|+++|+||+|+.+...
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~-----~~~iiivvNK~Dl~~~~~ 154 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-G-----LKHIIIVQNKIDLVKEEQ 154 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-C-----CCcEEEEEEchhccCHHH
Confidence 1257899999999988888888888999999999998742111111122222211 1 247999999999975321
Q ss_pred cccchHHHHHHHHHc--CCCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 139 RVVPQKKALEWCAYR--GNIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 139 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
.....+++..++... ...+++++||++|.|++++++++.+.+.
T Consensus 155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 222234444444432 2367999999999999999999987553
No 174
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=7e-22 Score=157.47 Aligned_cols=165 Identities=21% Similarity=0.184 Sum_probs=113.5
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcC-CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc-----------
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKF-SQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL----------- 77 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 77 (210)
...++|+++|.+|+|||||+++|++... .....++++.+.....+..++ ..+.+|||||.......
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 4579999999999999999999997653 234445555555555555555 45789999996432211
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCc
Q 028305 78 GSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIP 157 (210)
Q Consensus 78 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
...+++.+|++|+|+|++++.+..... +...+... +.|+++|+||+|+.+........+++.......+..+
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~-------~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 320 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALEA-------GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAP 320 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc-------CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCC
Confidence 123577899999999999876655432 22333221 6799999999999743212222233333333334578
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhcc
Q 028305 158 YFETSAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 158 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
++++||++|.|++++++.+.+.+....
T Consensus 321 i~~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 321 IVFISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999988765543
No 175
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=8.1e-22 Score=137.23 Aligned_cols=156 Identities=20% Similarity=0.128 Sum_probs=103.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCccc-ceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc--------cccccc
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYK-ATIGADFVTKELQMDDKLVTLQIWDTAGQERFQS--------LGSAFY 82 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~ 82 (210)
..+|+++|++|+|||||+++|.+........ +.......... .......+.+|||||...... .....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 6789999999999999999999775432211 11111111111 222346789999999653322 223457
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEec
Q 028305 83 RGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETS 162 (210)
Q Consensus 83 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (210)
..+|++++|+|.+++.+.. ...+...+... +.|+++|+||+|+... .....+....+....+..+++++|
T Consensus 81 ~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~-------~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~s 150 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEG-DEFILELLKKS-------KTPVILVLNKIDLVKD--KEDLLPLLEKLKELGPFAEIFPIS 150 (168)
T ss_pred HhCCEEEEEEECCCccCch-HHHHHHHHHHh-------CCCEEEEEEchhcccc--HHHHHHHHHHHHhccCCCceEEEE
Confidence 7899999999999872211 12223333322 5699999999999743 233344444555555457899999
Q ss_pred CCCCCChHHHHHHHHHH
Q 028305 163 AKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 163 a~~~~~v~~~~~~l~~~ 179 (210)
++++.|++++++.|.+.
T Consensus 151 ~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 151 ALKGENVDELLEEIVKY 167 (168)
T ss_pred eccCCChHHHHHHHHhh
Confidence 99999999999999875
No 176
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=5.5e-22 Score=144.46 Aligned_cols=173 Identities=21% Similarity=0.187 Sum_probs=119.0
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCc-ccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc--------cc
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQ-YKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL--------GS 79 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~ 79 (210)
..+.--|+++|.||+|||||+|++++...+-. +.+.++.......+..+ ..++.++||||..+.... ..
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 44567899999999999999999999887633 33333344434444433 477999999994432222 23
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHH-HHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcE
Q 028305 80 AFYRGADCCVLVYDVNVQKTFESLQNW-REEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPY 158 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~s~~~~~~~-~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
..+..+|++++|+|.+.+..- ...+ +..+.. . +.|+++++||+|..... ..................+
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~-~------~~pvil~iNKID~~~~~--~~l~~~~~~~~~~~~f~~i 149 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGP--GDEFILEQLKK-T------KTPVILVVNKIDKVKPK--TVLLKLIAFLKKLLPFKEI 149 (298)
T ss_pred HHhccCcEEEEEEeccccCCc--cHHHHHHHHhh-c------CCCeEEEEEccccCCcH--HHHHHHHHHHHhhCCcceE
Confidence 446789999999999874322 2222 233322 1 66999999999987642 2123444444555556789
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhcccccccCCCCCcce
Q 028305 159 FETSAKEDCNIDEAFLCVAEIALKNEHKDIYYQPQGISE 197 (210)
Q Consensus 159 ~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (210)
+++||++|.|++.+.+.+...+.+..+ .|+++.++.
T Consensus 150 vpiSA~~g~n~~~L~~~i~~~Lpeg~~---~yp~d~itD 185 (298)
T COG1159 150 VPISALKGDNVDTLLEIIKEYLPEGPW---YYPEDQITD 185 (298)
T ss_pred EEeeccccCCHHHHHHHHHHhCCCCCC---cCChhhccC
Confidence 999999999999999999998887766 555555544
No 177
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.6e-22 Score=136.77 Aligned_cols=167 Identities=26% Similarity=0.578 Sum_probs=144.7
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
....++++++|+.|.||||++.+...+.|...+.++++.....-.+..+...+++..|||.|++.+..+...++-++.+.
T Consensus 7 ~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcA 86 (216)
T KOG0096|consen 7 QGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCA 86 (216)
T ss_pred ccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEeccee
Confidence 35699999999999999999999999999999999999988877777666679999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
|++||+...-++.++.+|...+.+.+. ++|+++++||.|..+.. ...+...+.+... +.++++|++.+-|
T Consensus 87 iimFdVtsr~t~~n~~rwhrd~~rv~~-----NiPiv~cGNKvDi~~r~----~k~k~v~~~rkkn-l~y~~iSaksn~N 156 (216)
T KOG0096|consen 87 IIMFDVTSRFTYKNVPRWHRDLVRVRE-----NIPIVLCGNKVDIKARK----VKAKPVSFHRKKN-LQYYEISAKSNYN 156 (216)
T ss_pred EEEeeeeehhhhhcchHHHHHHHHHhc-----CCCeeeeccceeccccc----cccccceeeeccc-ceeEEeecccccc
Confidence 999999999999999999999998876 89999999999987532 1222233334444 8999999999999
Q ss_pred hHHHHHHHHHHHHhccc
Q 028305 169 IDEAFLCVAEIALKNEH 185 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~ 185 (210)
.+.-|-|+++++.-...
T Consensus 157 fekPFl~LarKl~G~p~ 173 (216)
T KOG0096|consen 157 FERPFLWLARKLTGDPS 173 (216)
T ss_pred cccchHHHhhhhcCCCC
Confidence 99999999999865544
No 178
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=2.7e-22 Score=138.43 Aligned_cols=143 Identities=18% Similarity=0.177 Sum_probs=98.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcc----cccccccccccCCcEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE----RFQSLGSAFYRGADCCV 89 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~vi 89 (210)
+|+++|.+|+|||||+++|.+.... ...+.+. .+... .+|||||.. ++.......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 7999999999999999998754311 1111111 22221 269999962 22222233468899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCC-CcEEEecCCCCCC
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGN-IPYFETSAKEDCN 168 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 168 (210)
+|+|.++..++.. .|+..+ . .+.|+++++||+|+.+. ..+....++...+. .+++++||++|.|
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~----~----~~~~ii~v~nK~Dl~~~-----~~~~~~~~~~~~~~~~p~~~~Sa~~g~g 134 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI----G----VSKRQIAVISKTDMPDA-----DVAATRKLLLETGFEEPIFELNSHDPQS 134 (158)
T ss_pred EEEeCCCcccccC--HHHHhc----c----CCCCeEEEEEccccCcc-----cHHHHHHHHHHcCCCCCEEEEECCCccC
Confidence 9999998876532 333332 1 15699999999998542 23455666666663 4899999999999
Q ss_pred hHHHHHHHHHHHHhcc
Q 028305 169 IDEAFLCVAEIALKNE 184 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~ 184 (210)
++++|+.+.+.+.+..
T Consensus 135 i~~l~~~l~~~~~~~~ 150 (158)
T PRK15467 135 VQQLVDYLASLTKQEE 150 (158)
T ss_pred HHHHHHHHHHhchhhh
Confidence 9999999988875543
No 179
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=6.6e-22 Score=165.19 Aligned_cols=165 Identities=21% Similarity=0.173 Sum_probs=114.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc----------cccc-c
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER----------FQSL-G 78 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~ 78 (210)
..++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++. .+.+|||||..+ +... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4689999999999999999999987642 234455556666666667664 467999999532 1111 1
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcE
Q 028305 79 SAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPY 158 (210)
Q Consensus 79 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
...++.+|++++|+|+++..+..... ++..+... ++|+++|+||+|+.+.....................++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~~-------~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~i 598 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVDA-------GRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARR 598 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc-------CCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCE
Confidence 23467899999999999887776654 33333221 67999999999997532112222222222122234678
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 159 FETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 159 ~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
+++||++|.|++++++.+.+.+.+...
T Consensus 599 i~iSAktg~gv~~L~~~i~~~~~~~~~ 625 (712)
T PRK09518 599 VNLSAKTGWHTNRLAPAMQEALESWDQ 625 (712)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998876543
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=1.8e-21 Score=161.67 Aligned_cols=161 Identities=20% Similarity=0.210 Sum_probs=113.8
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
..++..|+|+|+.++|||||+++|....+......+.+.+.....+..++ ..+.||||||+..|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45788999999999999999999998777655545555555444455554 5689999999999999998889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHH---HHHHHc-CCCcEEEecCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKAL---EWCAYR-GNIPYFETSAK 164 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~Sa~ 164 (210)
|+|+|+++...-.....| ..... .++|+|+++||+|+.+.....+ ..++. .+...+ +.++++++||+
T Consensus 365 ILVVdAddGv~~qT~e~i-~~a~~-------~~vPiIVviNKiDl~~a~~e~V-~~eL~~~~~~~e~~g~~vp~vpvSAk 435 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI-NHAKA-------AGVPIIVAINKIDKPGANPDRV-KQELSEYGLVPEEWGGDTIFVPVSAK 435 (787)
T ss_pred EEEEECCCCCCHhHHHHH-HHHHh-------cCCcEEEEEECccccccCHHHH-HHHHHHhcccHHHhCCCceEEEEeCC
Confidence 999999874222222222 11111 1789999999999965321111 11111 112222 24789999999
Q ss_pred CCCChHHHHHHHHHHH
Q 028305 165 EDCNIDEAFLCVAEIA 180 (210)
Q Consensus 165 ~~~~v~~~~~~l~~~~ 180 (210)
+|.|++++|++|....
T Consensus 436 tG~GI~eLle~I~~~~ 451 (787)
T PRK05306 436 TGEGIDELLEAILLQA 451 (787)
T ss_pred CCCCchHHHHhhhhhh
Confidence 9999999999998643
No 181
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.88 E-value=1.2e-21 Score=161.32 Aligned_cols=162 Identities=20% Similarity=0.254 Sum_probs=112.8
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeE--EEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGAD--FVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
.+..+|+|+|++++|||||+++|....+......+.+.+ .+...+..++....+.+|||||+..|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 467899999999999999999999877765444444332 222233334445789999999999999999889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHH---HHHHc-CCCcEEEecC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALE---WCAYR-GNIPYFETSA 163 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~Sa 163 (210)
+|+|+|+++.........+ ..+.. .++|+|+++||+|+.+... ....+++.. +.... +..+++++||
T Consensus 322 aILVVDA~dGv~~QT~E~I-~~~k~-------~~iPiIVViNKiDl~~~~~-e~v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI-NYIQA-------ANVPIIVAINKIDKANANT-ERIKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred EEEEEECcCCCChhhHHHH-HHHHh-------cCceEEEEEECCCccccCH-HHHHHHHHHhccchHhhCCCceEEEEEC
Confidence 9999999874332222222 12211 1789999999999975321 111111111 11122 2468999999
Q ss_pred CCCCChHHHHHHHHHHH
Q 028305 164 KEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~~~ 180 (210)
++|.|+++++++|...+
T Consensus 393 ktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 393 SQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCHHHHHHhhhhhh
Confidence 99999999999998765
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=3.7e-21 Score=153.33 Aligned_cols=148 Identities=20% Similarity=0.202 Sum_probs=105.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc--------cccccccccc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER--------FQSLGSAFYR 83 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 83 (210)
++|+++|.+|+|||||+++|.+.... ....++.+.+........++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999977642 23345555566666666666 6799999999876 2223345678
Q ss_pred CCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEe
Q 028305 84 GADCCVLVYDVNVQKTFES--LQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 84 ~~d~vi~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
.+|++++|+|.+++.+... +..|+... +.|+++|+||+|+.+. .+....+ ...+...++++
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~----------~~piilv~NK~D~~~~------~~~~~~~-~~lg~~~~~~i 142 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS----------NKPVILVVNKVDGPDE------EADAYEF-YSLGLGEPYPI 142 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CCcEEEEEECccCccc------hhhHHHH-HhcCCCCCEEE
Confidence 8999999999987544322 22333221 6799999999996531 1222233 23453458999
Q ss_pred cCCCCCChHHHHHHHHHH
Q 028305 162 SAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~ 179 (210)
||++|.|+.++++.+.+.
T Consensus 143 Sa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 143 SAEHGRGIGDLLDAILEE 160 (435)
T ss_pred EeeCCCCHHHHHHHHHhh
Confidence 999999999999999883
No 183
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.87 E-value=4.9e-21 Score=125.56 Aligned_cols=174 Identities=24% Similarity=0.420 Sum_probs=147.9
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
.++.-.+||.++|++..|||||+-++.++.+...+..+.+..+..+.+.+.+..+.+.+||.+|++++..+.+.....+-
T Consensus 15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence 45667899999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC---cccchHHHHHHHHHcCCCcEEEecC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS---RVVPQKKALEWCAYRGNIPYFETSA 163 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (210)
+++++||++.+.++..+..|+.+....... .+| |+|++|.|+.-..+ ........+..++-.+ .+.+++|+
T Consensus 95 aIlFmFDLt~r~TLnSi~~WY~QAr~~Nkt----AiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn-AsL~F~St 168 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKEWYRQARGLNKT----AIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMN-ASLFFCST 168 (205)
T ss_pred EEEEEEecCchHHHHHHHHHHHHHhccCCc----cce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC-CcEEEeec
Confidence 999999999999999999999988765433 455 57899999743221 1223344566666666 78999999
Q ss_pred CCCCChHHHHHHHHHHHHhcccc
Q 028305 164 KEDCNIDEAFLCVAEIALKNEHK 186 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~~~~~~~~~ 186 (210)
..+.|+..+|.-+.-++......
T Consensus 169 s~sINv~KIFK~vlAklFnL~~t 191 (205)
T KOG1673|consen 169 SHSINVQKIFKIVLAKLFNLPWT 191 (205)
T ss_pred cccccHHHHHHHHHHHHhCCcee
Confidence 99999999999999998877653
No 184
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3e-21 Score=124.40 Aligned_cols=159 Identities=18% Similarity=0.301 Sum_probs=121.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
.+.++|+.+|-.++||||++.+|..+... ...|+++... ..+.+ .++.+.+||.+|++..+.+|..|+....++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnv--etVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNV--ETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-ccccccceeE--EEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 35789999999999999999999976654 5566666544 34444 4588999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc----CCCcEEEecCCC
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR----GNIPYFETSAKE 165 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~ 165 (210)
+|+|..+.+..+... .++.+......-...|+++.+||-|+..+. ..+++..+.+-. ....+.++|+.+
T Consensus 90 FV~Dsa~~dr~eeAr---~ELh~ii~~~em~~~~~LvlANkQDlp~A~----~pqei~d~leLe~~r~~~W~vqp~~a~~ 162 (180)
T KOG0071|consen 90 FVVDSADRDRIEEAR---NELHRIINDREMRDAIILILANKQDLPDAM----KPQEIQDKLELERIRDRNWYVQPSCALS 162 (180)
T ss_pred EEEeccchhhHHHHH---HHHHHHhCCHhhhcceEEEEecCccccccc----CHHHHHHHhccccccCCccEeecccccc
Confidence 999998876555544 344444444444478999999999998653 344444443222 235688999999
Q ss_pred CCChHHHHHHHHHHH
Q 028305 166 DCNIDEAFLCVAEIA 180 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~ 180 (210)
|.|+.|-|.|+...+
T Consensus 163 gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 163 GDGLKEGLSWLSNNL 177 (180)
T ss_pred chhHHHHHHHHHhhc
Confidence 999999999998764
No 185
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.87 E-value=4.2e-21 Score=132.56 Aligned_cols=154 Identities=21% Similarity=0.192 Sum_probs=103.1
Q ss_pred EEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc-------ccccccCCcEE
Q 028305 17 VLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL-------GSAFYRGADCC 88 (210)
Q Consensus 17 v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~d~v 88 (210)
++|++|+|||||++++.+.... .....+.+............ ...+.+||+||....... ...+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999976544 22333333333333333321 357999999997655433 33467889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|+|.+++....... +....... +.|+++|+||+|+..........+............+++++|++++.|
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~~-------~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 151 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRER-------GKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEG 151 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHhc-------CCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCC
Confidence 9999999987666554 22332221 779999999999976421111111012222333458899999999999
Q ss_pred hHHHHHHHHHH
Q 028305 169 IDEAFLCVAEI 179 (210)
Q Consensus 169 v~~~~~~l~~~ 179 (210)
+.++++++.+.
T Consensus 152 v~~l~~~l~~~ 162 (163)
T cd00880 152 IDELREALIEA 162 (163)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 186
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.87 E-value=5.9e-21 Score=154.82 Aligned_cols=161 Identities=26% Similarity=0.278 Sum_probs=105.5
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC----------------CeEEEEEEEeCCCcccc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD----------------DKLVTLQIWDTAGQERF 74 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~~~~ 74 (210)
++.-|+++|++++|||||+++|.+..+......+.+.+.....+..+ .....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 34569999999999999999999877654332222221111111110 01123889999999999
Q ss_pred cccccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcc----------c
Q 028305 75 QSLGSAFYRGADCCVLVYDVNV---QKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRV----------V 141 (210)
Q Consensus 75 ~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~----------~ 141 (210)
..++..+++.+|++++|+|+++ +.+++.+. .+.. .++|+++++||+|+.+.-... .
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~-------~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak 151 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM-------YKTPFVVAANKIDRIPGWRSHEGRPFMESFSK 151 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH-------cCCCEEEEEECCCccchhhhccCchHHHHHHh
Confidence 9988889999999999999987 44444332 1111 167999999999996421000 0
Q ss_pred chH------------HHHHHH-------------HHcCCCcEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 142 PQK------------KALEWC-------------AYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 142 ~~~------------~~~~~~-------------~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
..+ ...++. ...+..+++++||++|+|+++++.++...+.+
T Consensus 152 ~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 152 QEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 000 001111 11234789999999999999999998766544
No 187
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=8.2e-21 Score=136.22 Aligned_cols=121 Identities=19% Similarity=0.275 Sum_probs=88.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC-cEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGA-DCCVLVY 92 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~vi~v~ 92 (210)
+|+++|++|||||||+++|..+.+.....++ ............+....+.+||+||+.++......+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988776544332 2222221222123456799999999999988888889998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 93 DVNVQ-KTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 93 d~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
|..+. .++.....|+..+...... ...++|+++++||+|+...
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~-~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEK-VKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhh-ccCCCCEEEEecchhhccc
Confidence 99987 6676666665555432211 1137899999999998654
No 188
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.87 E-value=4.4e-21 Score=152.10 Aligned_cols=161 Identities=18% Similarity=0.193 Sum_probs=107.6
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCC-------------------------------CcccceeeeEEEEEEEE
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFS-------------------------------QQYKATIGADFVTKELQ 55 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 55 (210)
+.+++.++|+++|++++|||||+++|+...-. .+...+++++.....+.
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~ 80 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE 80 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence 35678899999999999999999999833211 11234555555554444
Q ss_pred eCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCC
Q 028305 56 MDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDG 135 (210)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~ 135 (210)
. ..+.+.+|||||++++.......+..+|++++|+|++++........+...+..... ..|+++++||+|+.+
T Consensus 81 ~--~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-----~~~iivviNK~Dl~~ 153 (425)
T PRK12317 81 T--DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-----INQLIVAINKMDAVN 153 (425)
T ss_pred c--CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-----CCeEEEEEEcccccc
Confidence 4 447899999999988877666667889999999999873122111111112222211 236999999999975
Q ss_pred CCC--cccchHHHHHHHHHcC----CCcEEEecCCCCCChHHHHH
Q 028305 136 GSS--RVVPQKKALEWCAYRG----NIPYFETSAKEDCNIDEAFL 174 (210)
Q Consensus 136 ~~~--~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~~~ 174 (210)
... .....+++..++...+ ..+++++||++|.|+++...
T Consensus 154 ~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 154 YDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 211 1233455666665555 25799999999999997543
No 189
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.87 E-value=2.2e-20 Score=122.24 Aligned_cols=169 Identities=26% Similarity=0.393 Sum_probs=135.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC--CcccceeeeEEEEEEEEe-CCeEEEEEEEeCCCcccc-cccccccccCC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS--QQYKATIGADFVTKELQM-DDKLVTLQIWDTAGQERF-QSLGSAFYRGA 85 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~ 85 (210)
.+..||+|+|..++|||+++..|..+... ....++.+ +.+...+.. ++..-.+.++||.|-... ..+-..|+.-+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 45679999999999999999998854432 34455553 454555544 455567999999996655 66667888889
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCC
Q 028305 86 DCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKE 165 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (210)
|++++||+..+++||+.+....+.+.+.. +...+|+++++||+|+.+. +.+..+....+++... +..+++++.+
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~K---dKKEvpiVVLaN~rdr~~p--~~vd~d~A~~Wa~rEk-vkl~eVta~d 159 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHK---DKKEVPIVVLANKRDRAEP--REVDMDVAQIWAKREK-VKLWEVTAMD 159 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhcc---ccccccEEEEechhhcccc--hhcCHHHHHHHHhhhh-eeEEEEEecc
Confidence 99999999999999999887777776633 3347899999999999865 8888899999999888 9999999999
Q ss_pred CCChHHHHHHHHHHHHhccc
Q 028305 166 DCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~~~ 185 (210)
...+-+.|..+..++..-..
T Consensus 160 R~sL~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 160 RPSLYEPFTYLASRLHQPQS 179 (198)
T ss_pred chhhhhHHHHHHHhccCCcc
Confidence 99999999999888755433
No 190
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.87 E-value=5.7e-21 Score=155.94 Aligned_cols=161 Identities=20% Similarity=0.202 Sum_probs=112.1
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCc--CCC-------------cccceeeeEEEEEEEEe---CCeEEEEEEEeCCCc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNK--FSQ-------------QYKATIGADFVTKELQM---DDKLVTLQIWDTAGQ 71 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~ 71 (210)
+...+++++|+.++|||||+.+|+... ... +...+.++......+.+ ++..+.+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456799999999999999999998532 110 00111222111111211 556789999999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHH
Q 028305 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCA 151 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~ 151 (210)
.++...+..+++.+|++|+|+|+++.........|..... .++|+++|+||+|+.+.. ..+...++..
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--------~~lpiIvViNKiDl~~a~----~~~v~~ei~~ 152 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NDLEIIPVLNKIDLPAAD----PERVKQEIED 152 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEEEECCCCCccc----HHHHHHHHHH
Confidence 9999889999999999999999998765555555543321 167999999999986432 1112223333
Q ss_pred HcCC--CcEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 152 YRGN--IPYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 152 ~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
..+. ..++++||++|.|+.+++++|.+.+..
T Consensus 153 ~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 153 VIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 3331 248999999999999999999988754
No 191
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.87 E-value=7.5e-21 Score=155.16 Aligned_cols=146 Identities=18% Similarity=0.199 Sum_probs=108.0
Q ss_pred cCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc------ccccc--cCCcEEEE
Q 028305 19 GDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL------GSAFY--RGADCCVL 90 (210)
Q Consensus 19 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~vi~ 90 (210)
|++|+|||||+|+|.+......+.++.+.+.....+..++ ..+.+|||||+.++... ...++ +.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998877656677777777766777666 45899999998776543 22222 36899999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|+|.++.+.. ..+..++.+ .++|+++|+||+|+.+.. .. ..+.+.+.+..+ .+++++||++|.|++
T Consensus 79 VvDat~ler~---l~l~~ql~~-------~~~PiIIVlNK~Dl~~~~--~i-~~d~~~L~~~lg-~pvv~tSA~tg~Gi~ 144 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE-------LGIPMILALNLVDEAEKK--GI-RIDEEKLEERLG-VPVVPTSATEGRGIE 144 (591)
T ss_pred EecCCcchhh---HHHHHHHHh-------cCCCEEEEEehhHHHHhC--CC-hhhHHHHHHHcC-CCEEEEECCCCCCHH
Confidence 9999875332 222233322 168999999999986431 12 234566667677 899999999999999
Q ss_pred HHHHHHHHHH
Q 028305 171 EAFLCVAEIA 180 (210)
Q Consensus 171 ~~~~~l~~~~ 180 (210)
++++++.+.+
T Consensus 145 eL~~~i~~~~ 154 (591)
T TIGR00437 145 RLKDAIRKAI 154 (591)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 192
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.87 E-value=2.1e-20 Score=155.98 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=111.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc----------ccc
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG----------SAF 81 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------~~~ 81 (210)
.++|+++|+||+|||||+|+|.+........++++.+.....+.. ....+.+|||||..++.... ..+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~--~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc--CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 578999999999999999999987665555566666554444443 44679999999987654321 112
Q ss_pred --ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEE
Q 028305 82 --YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYF 159 (210)
Q Consensus 82 --~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
...+|++++|+|.++.+... .+..++.+. ++|+++|+||+|+.+. +. ...+.+.+.+..+ .+++
T Consensus 81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e~-------giPvIvVlNK~Dl~~~--~~-i~id~~~L~~~LG-~pVv 146 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL---YLTLQLLEL-------GIPCIVALNMLDIAEK--QN-IRIDIDALSARLG-CPVI 146 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH---HHHHHHHHc-------CCCEEEEEEchhhhhc--cC-cHHHHHHHHHHhC-CCEE
Confidence 24789999999998864422 233444332 7899999999998643 22 2344566667777 8999
Q ss_pred EecCCCCCChHHHHHHHHHHH
Q 028305 160 ETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 160 ~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
++|+.+|.|++++++.+.+..
T Consensus 147 piSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 147 PLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEeecCCCHHHHHHHHHHhh
Confidence 999999999999999998765
No 193
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.86 E-value=1.8e-23 Score=140.97 Aligned_cols=180 Identities=39% Similarity=0.603 Sum_probs=152.6
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD-DKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
....++++|+|.-|+|||+++.+++...++..+..+++.++.-+...-+ ...+++++||..|++++..+..-+++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 3568999999999999999999999999988888888877765555443 345789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
..+|||+++..+|+....|...+...........+|+++.+||||..... ..........+.+.++....+++|++.+.
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a-~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA-KNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHh-hhhhHHHHHHHHhccCccceeeecccccc
Confidence 99999999999999999999999877665566678999999999986531 22234677888888888889999999999
Q ss_pred ChHHHHHHHHHHHHhccccccc
Q 028305 168 NIDEAFLCVAEIALKNEHKDIY 189 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~~~~~~~ 189 (210)
|+.|+-..+++.++.+..+...
T Consensus 181 ni~Ea~r~lVe~~lvnd~q~~~ 202 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVNDEQPIK 202 (229)
T ss_pred ChhHHHHHHHHHHHhhccCCcc
Confidence 9999999999999888754433
No 194
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=9.8e-21 Score=150.76 Aligned_cols=152 Identities=20% Similarity=0.192 Sum_probs=108.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCc--------ccccccccccccC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ--------ERFQSLGSAFYRG 84 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~~~~ 84 (210)
+|+++|.+|+|||||+|+|++.... ....++.+.+........++ ..+.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999977643 23345555566556666655 45999999995 3334445667889
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCC
Q 028305 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK 164 (210)
Q Consensus 85 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (210)
+|++++|+|..++.+.... .+...+.+. +.|+++|+||+|+.+... ...+ ....+..+++++||.
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~~-------~~piilVvNK~D~~~~~~------~~~~-~~~lg~~~~~~vSa~ 143 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRKS-------GKPVILVANKIDGKKEDA------VAAE-FYSLGFGEPIPISAE 143 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHHh-------CCCEEEEEECccCCcccc------cHHH-HHhcCCCCeEEEeCC
Confidence 9999999999875443321 222223221 679999999999875321 1122 234564589999999
Q ss_pred CCCChHHHHHHHHHHHHh
Q 028305 165 EDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 165 ~~~~v~~~~~~l~~~~~~ 182 (210)
+|.|+.++++.+.+.+..
T Consensus 144 ~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 144 HGRGIGDLLDAILELLPE 161 (429)
T ss_pred cCCChHHHHHHHHHhcCc
Confidence 999999999999988754
No 195
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.86 E-value=1.1e-20 Score=149.77 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=108.0
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhC--cCC-----------------------------CcccceeeeEEEEEEEEeC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYN--KFS-----------------------------QQYKATIGADFVTKELQMD 57 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 57 (210)
....++|+++|+.++|||||+++|+.. ... .+...+.+.+.....+..
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~- 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET- 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence 567899999999999999999999852 111 112234445554444444
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 58 DKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
....+.+|||||+++|.......+..+|++++|+|+++.+++.... .+...+..... ..|+++|+||+|+.+.
T Consensus 83 -~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-----~~~iIVviNK~Dl~~~ 156 (426)
T TIGR00483 83 -DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-----INQLIVAINKMDSVNY 156 (426)
T ss_pred -CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-----CCeEEEEEEChhccCc
Confidence 4478999999999988777777788999999999999875331111 11112222221 3479999999999642
Q ss_pred CC--cccchHHHHHHHHHcC----CCcEEEecCCCCCChHHHH
Q 028305 137 SS--RVVPQKKALEWCAYRG----NIPYFETSAKEDCNIDEAF 173 (210)
Q Consensus 137 ~~--~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~~ 173 (210)
.. .....+++..+++..+ ..+++++||++|.|+.+++
T Consensus 157 ~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 157 DEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 21 2233556666776655 3679999999999998744
No 196
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.86 E-value=1.9e-20 Score=130.64 Aligned_cols=153 Identities=22% Similarity=0.250 Sum_probs=99.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc----------cccccccccc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER----------FQSLGSAFYR 83 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~ 83 (210)
.|+++|++|+|||||++.+.+..+.....++.+.+.....+..++ .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996555444444443333333333333 799999999433 2233333333
Q ss_pred ---CCcEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHH-HcCCCc
Q 028305 84 ---GADCCVLVYDVNVQKTF--ESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCA-YRGNIP 157 (210)
Q Consensus 84 ---~~d~vi~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~~ 157 (210)
..+++++++|..+..+. ..+..|+... +.|+++|+||+|+.+...............+ .....+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~----------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL----------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPP 147 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc----------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCc
Confidence 45788999998865322 2223333322 5699999999999654323333333333333 244478
Q ss_pred EEEecCCCCCChHHHHHHHHHH
Q 028305 158 YFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 158 ~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
++++|++++.|+.+++++|.+.
T Consensus 148 ~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 148 IILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred eEEEecCCCCCHHHHHHHHHHh
Confidence 9999999999999999999875
No 197
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=4.1e-20 Score=141.86 Aligned_cols=165 Identities=22% Similarity=0.189 Sum_probs=123.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc-----------
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG----------- 78 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------- 78 (210)
.+++|+++|.||+|||||+|+|++..-. ....++++.+.....+..+++ ++.++||+|..+-....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence 5799999999999999999999977643 566778888888888888785 47788999944322222
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC--CCcccchHHHHHHHHHcCCC
Q 028305 79 SAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG--SSRVVPQKKALEWCAYRGNI 156 (210)
Q Consensus 79 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~--~~~~~~~~~~~~~~~~~~~~ 156 (210)
...+..+|++++|+|.+.+-+-... .....+... +.++++|+||+|+.+. .......++++......+..
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~~-------g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a 326 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEEA-------GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFA 326 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHHc-------CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCC
Confidence 2335679999999999987554432 222222222 6799999999999765 23445555666666666778
Q ss_pred cEEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 157 PYFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 157 ~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
+++++||++|.++.++|+.+.+.......
T Consensus 327 ~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ 355 (444)
T COG1160 327 PIVFISALTGQGLDKLFEAIKEIYECATR 355 (444)
T ss_pred eEEEEEecCCCChHHHHHHHHHHHHHhcc
Confidence 89999999999999999999887765544
No 198
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.9e-21 Score=129.87 Aligned_cols=167 Identities=22% Similarity=0.320 Sum_probs=123.9
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhC---cCC----CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYN---KFS----QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG 78 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (210)
.+..+..+.|+++|..++|||||+.++... .+. ..-.++.+.. ...+.+. +..+.+||.+|++..++++
T Consensus 11 ~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLn--ig~i~v~--~~~l~fwdlgGQe~lrSlw 86 (197)
T KOG0076|consen 11 YMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLN--IGTIEVC--NAPLSFWDLGGQESLRSLW 86 (197)
T ss_pred HHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeeccccee--ecceeec--cceeEEEEcCChHHHHHHH
Confidence 455677899999999999999999876421 111 1223333333 3344444 3679999999999999999
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHH---Hc--
Q 028305 79 SAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCA---YR-- 153 (210)
Q Consensus 79 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~---~~-- 153 (210)
..|+..+|++|+++|.++++.++.....+..+... ...+++|+++.+||.|+.+.. ...+++.... ..
T Consensus 87 ~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~---E~leg~p~L~lankqd~q~~~----~~~El~~~~~~~e~~~~ 159 (197)
T KOG0076|consen 87 KKYYWLAHGIIYVIDATDRERFEESKTAFEKVVEN---EKLEGAPVLVLANKQDLQNAM----EAAELDGVFGLAELIPR 159 (197)
T ss_pred HHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHH---HHhcCCchhhhcchhhhhhhh----hHHHHHHHhhhhhhcCC
Confidence 99999999999999999999888776544444322 223489999999999998653 2233332222 22
Q ss_pred CCCcEEEecCCCCCChHHHHHHHHHHHHhc
Q 028305 154 GNIPYFETSAKEDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 154 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 183 (210)
+...+.++||.+|+||++...|+...+.++
T Consensus 160 rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 160 RDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 246799999999999999999999999888
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=7.6e-20 Score=152.92 Aligned_cols=156 Identities=21% Similarity=0.205 Sum_probs=108.0
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc--------ccccccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER--------FQSLGSA 80 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~ 80 (210)
....+|+++|.+|+|||||+|+|++.... ....++++.+........++ ..+.+|||||.+. +......
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 44578999999999999999999976542 23345666665555555555 4688999999653 2233345
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 81 FYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 81 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
+++.+|++++|+|.++...... ..|...+.. .++|+++|+||+|+... ......+. ..+....++
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-------~~~pvIlV~NK~D~~~~------~~~~~~~~-~lg~~~~~~ 415 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR-------AGKPVVLAVNKIDDQAS------EYDAAEFW-KLGLGEPYP 415 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh-------cCCCEEEEEECcccccc------hhhHHHHH-HcCCCCeEE
Confidence 6788999999999986422111 233344432 17799999999998542 11222222 233345789
Q ss_pred ecCCCCCChHHHHHHHHHHHHh
Q 028305 161 TSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
+||++|.|+.++++++++.+..
T Consensus 416 iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 416 ISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred EECCCCCCchHHHHHHHHhccc
Confidence 9999999999999999998865
No 200
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.85 E-value=4.6e-20 Score=141.98 Aligned_cols=155 Identities=21% Similarity=0.241 Sum_probs=118.0
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccccc--------c
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGS--------A 80 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~ 80 (210)
..-++++++|.||+|||||+|.|.+.... ....++++.|.....+.++| +.+.+.||+|..+.....+ .
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 35789999999999999999999977654 67789999999999999988 6788889999665554443 3
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 81 FYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 81 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
.+..||.+++|+|.+.+.+-.....+. ... .+.|+++|.||.|+.+... .... +.....+++.
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~-----~~~----~~~~~i~v~NK~DL~~~~~----~~~~----~~~~~~~~i~ 355 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIE-----LLP----KKKPIIVVLNKADLVSKIE----LESE----KLANGDAIIS 355 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHH-----hcc----cCCCEEEEEechhcccccc----cchh----hccCCCceEE
Confidence 367899999999999863322222111 111 2679999999999986421 1111 2222357999
Q ss_pred ecCCCCCChHHHHHHHHHHHHhc
Q 028305 161 TSAKEDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~~~~~ 183 (210)
+|+++|.|++.+.+.|.+.+...
T Consensus 356 iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 356 ISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EEecCccCHHHHHHHHHHHHhhc
Confidence 99999999999999999988777
No 201
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.85 E-value=1.1e-19 Score=132.79 Aligned_cols=155 Identities=21% Similarity=0.133 Sum_probs=102.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc-------ccccccccCCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ-------SLGSAFYRGAD 86 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d 86 (210)
+|+++|++|+|||||+++|.+........+..+.+.....+.+++ ..+++||+||..+.. ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999997654333333444445455555555 578999999964322 12345678999
Q ss_pred EEEEEEECCChhh-HHHHHHHHHH-----------------------------------------HHHhcC---------
Q 028305 87 CCVLVYDVNVQKT-FESLQNWREE-----------------------------------------FLKQAD--------- 115 (210)
Q Consensus 87 ~vi~v~d~~~~~s-~~~~~~~~~~-----------------------------------------l~~~~~--------- 115 (210)
++++|+|++++.. ...+...+.. +..+.-
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 9999999987642 2222222110 000000
Q ss_pred -----------CCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHH
Q 028305 116 -----------PGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 116 -----------~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
......+|+++|+||+|+.+. ++...++. ...++++||++|.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-------~~~~~~~~---~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-------EELDLLAR---QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-------HHHHHHhc---CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 011224699999999998642 33334433 24689999999999999999998765
No 202
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=2.7e-20 Score=142.85 Aligned_cols=150 Identities=20% Similarity=0.189 Sum_probs=112.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc---------ccccccc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ---------SLGSAFY 82 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~ 82 (210)
..|+++|.||+|||||.|||++...+ ....|+++.|..+......+.. +.++||+|.+.-. ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 67999999999999999999988765 4566788888888888887754 8889999955322 2234557
Q ss_pred cCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 83 RGADCCVLVYDVNVQKTFE--SLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 83 ~~~d~vi~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
..||++|||+|....-+-. .+..++. +. ++|+++|+||+|.... .+...++ ...|...+++
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr---~~-------~kpviLvvNK~D~~~~------e~~~~ef-yslG~g~~~~ 144 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILR---RS-------KKPVILVVNKIDNLKA------EELAYEF-YSLGFGEPVP 144 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH---hc-------CCCEEEEEEcccCchh------hhhHHHH-HhcCCCCceE
Confidence 8899999999998743322 2223322 11 6799999999997522 2333333 4466688999
Q ss_pred ecCCCCCChHHHHHHHHHHHH
Q 028305 161 TSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
+||..|.|+.++++.+++.+.
T Consensus 145 ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 145 ISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred eehhhccCHHHHHHHHHhhcC
Confidence 999999999999999999984
No 203
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.84 E-value=1.2e-19 Score=129.05 Aligned_cols=149 Identities=16% Similarity=0.090 Sum_probs=99.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcC----------------CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKF----------------SQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ 75 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (210)
.++|+++|+.++|||||+++|+.... ..+...+.+.+.. ...+......+.++||||+.++.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTA--HVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEee--eeEecCCCeEEEEEECcCHHHHH
Confidence 58999999999999999999985310 0111223333333 33333445678999999999888
Q ss_pred ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCC-EEEEEecCCCCCCCC-cccchHHHHHHHHHc
Q 028305 76 SLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACP-FVLLGNKIDTDGGSS-RVVPQKKALEWCAYR 153 (210)
Q Consensus 76 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K~D~~~~~~-~~~~~~~~~~~~~~~ 153 (210)
......+..+|++++|+|......-.. ...+..+... ++| +|+++||+|+..... .....+++..++...
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~-------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~ 151 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV-------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKY 151 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 777888889999999999986432221 2223333322 556 789999999864221 122344566666655
Q ss_pred C----CCcEEEecCCCCCChH
Q 028305 154 G----NIPYFETSAKEDCNID 170 (210)
Q Consensus 154 ~----~~~~~~~Sa~~~~~v~ 170 (210)
+ .++++++||.+|.|+.
T Consensus 152 g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 152 GFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred cccccCCeEEEeeCccccCCC
Confidence 4 3789999999999863
No 204
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.84 E-value=1.2e-19 Score=148.40 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=109.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC---cCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN---KFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
-|+++|+.++|||||+++|.+. .+..+...+.+++.....+...+ ...+.+|||||+++|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 5899999999999999999853 23334444555555444443322 2458999999999998777778889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCC-EEEEEecCCCCCCCCcccchHHHHHHHHHcC--CCcEEEecCCCCC
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACP-FVLLGNKIDTDGGSSRVVPQKKALEWCAYRG--NIPYFETSAKEDC 167 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~ 167 (210)
|+|+++...-... ..+..+ ... ++| +++|+||+|+.+........+++..++...+ ..+++++||++|.
T Consensus 81 VVda~eg~~~qT~-ehl~il-~~l------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~ 152 (614)
T PRK10512 81 VVACDDGVMAQTR-EHLAIL-QLT------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR 152 (614)
T ss_pred EEECCCCCcHHHH-HHHHHH-HHc------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence 9999873221111 111222 211 445 5799999999753222333455555555443 3689999999999
Q ss_pred ChHHHHHHHHHHHHh
Q 028305 168 NIDEAFLCVAEIALK 182 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~ 182 (210)
|++++++.|.+....
T Consensus 153 gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 153 GIDALREHLLQLPER 167 (614)
T ss_pred CCHHHHHHHHHhhcc
Confidence 999999999876543
No 205
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.84 E-value=2.9e-20 Score=146.25 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=107.6
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCC---CcccceeeeEEEEEE--------------EEe----CC------eEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFS---QQYKATIGADFVTKE--------------LQM----DD------KLV 61 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~~----~~------~~~ 61 (210)
+++.++|+++|++++|||||+++|.+.... .+...+.+....... +.. ++ ...
T Consensus 1 ~~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 1 RQPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CCceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 357899999999999999999999753221 111111111111100 001 11 135
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCccc
Q 028305 62 TLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVV 141 (210)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~ 141 (210)
.+.+|||||+++|...+...+..+|++++|+|++++.........+..+. ... ..|+++|+||+|+.+......
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~g-----i~~iIVvvNK~Dl~~~~~~~~ 154 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIG-----IKNIVIVQNKIDLVSKEKALE 154 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcC-----CCeEEEEEEccccCCHHHHHH
Confidence 79999999999998888888888999999999996431111122222222 111 236999999999975422222
Q ss_pred chHHHHHHHHHc--CCCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 142 PQKKALEWCAYR--GNIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 142 ~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
..+++..+.... ...+++++||++|.|+++++++|...+.
T Consensus 155 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 155 NYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 234444444432 1368999999999999999999988654
No 206
>PRK10218 GTP-binding protein; Provisional
Probab=99.84 E-value=1.4e-19 Score=147.31 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=112.3
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhh--CcCCCcc------------cceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVY--NKFSQQY------------KATIGADFVTKELQMDDKLVTLQIWDTAGQERFQS 76 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (210)
...+|+++|+.++|||||+++|+. +.+.... ....++++......+.....++.+|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 467999999999999999999996 3332211 12334444444455555568899999999999999
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc---
Q 028305 77 LGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR--- 153 (210)
Q Consensus 77 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~--- 153 (210)
.+..+++.+|++|+|+|+.+...... ..++..+... ++|.++++||+|+....... ..+++..+....
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~~-------gip~IVviNKiD~~~a~~~~-vl~ei~~l~~~l~~~ 154 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFAY-------GLKPIVVINKVDRPGARPDW-VVDQVFDLFVNLDAT 154 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHHc-------CCCEEEEEECcCCCCCchhH-HHHHHHHHHhccCcc
Confidence 99999999999999999987533322 2223333221 77999999999987543222 223333333221
Q ss_pred ---CCCcEEEecCCCCC----------ChHHHHHHHHHHHH
Q 028305 154 ---GNIPYFETSAKEDC----------NIDEAFLCVAEIAL 181 (210)
Q Consensus 154 ---~~~~~~~~Sa~~~~----------~v~~~~~~l~~~~~ 181 (210)
..++++++||.+|. |+..+++.+++.+.
T Consensus 155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 23679999999998 57778877776664
No 207
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.84 E-value=5.7e-20 Score=132.49 Aligned_cols=150 Identities=19% Similarity=0.178 Sum_probs=96.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCC-------------------------------cccceeeeEEEEEEEEeCCeEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQ-------------------------------QYKATIGADFVTKELQMDDKLVT 62 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 62 (210)
+|+++|++|+|||||+++|+...-.- +...+.+.+.....+...+ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 58999999999999999997432110 0113334444444444433 56
Q ss_pred EEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC--cc
Q 028305 63 LQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS--RV 140 (210)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~--~~ 140 (210)
+.+|||||+.++.......++.+|++++|+|.+++..-.. ......+. ... ..++|+|+||+|+.+... ..
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~-~~~-----~~~iIvviNK~D~~~~~~~~~~ 151 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILS-LLG-----IRHVVVAVNKMDLVDYSEEVFE 151 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHH-HcC-----CCcEEEEEEchhcccCCHHHHH
Confidence 8899999998876666677889999999999987532221 11122221 111 235888999999865321 11
Q ss_pred cchHHHHHHHHHcC--CCcEEEecCCCCCChHHH
Q 028305 141 VPQKKALEWCAYRG--NIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 141 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~ 172 (210)
....++..++...+ ..+++++||++|.|+.+.
T Consensus 152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 22345555555555 245999999999999854
No 208
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.84 E-value=6.1e-20 Score=144.38 Aligned_cols=168 Identities=18% Similarity=0.126 Sum_probs=107.7
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCC---CcccceeeeEEEEEEEEe------------------C------Ce
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFS---QQYKATIGADFVTKELQM------------------D------DK 59 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~------~~ 59 (210)
.++++.++|+++|+.++|||||+.+|.+.-.. .+...+.+.+........ + +.
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 45678899999999999999999999643111 111222222221111000 0 01
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC
Q 028305 60 LVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQK-TFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS 138 (210)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~ 138 (210)
...+.+|||||+.++..........+|++++|+|++++. ....... +..+... . ..|+++|+||+|+.+...
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~~-~-----i~~iiVVlNK~Dl~~~~~ 156 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDII-G-----IKNIVIVQNKIDLVSKER 156 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHHc-C-----CCcEEEEEEeeccccchh
Confidence 257899999999988776666677789999999999643 1222111 1222211 1 236899999999976422
Q ss_pred cccchHHHHHHHHHc--CCCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 139 RVVPQKKALEWCAYR--GNIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 139 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
.....+++..++... ...+++++||++|.|++++++.|.+.+.
T Consensus 157 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 157 ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 222234445554432 2378999999999999999999988764
No 209
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.83 E-value=7.3e-20 Score=121.32 Aligned_cols=136 Identities=24% Similarity=0.321 Sum_probs=99.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCC----cccccccccccccCCcEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG----QERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----~~~~~~~~~~~~~~~d~vi 89 (210)
||+++|+.|||||||+++|.+... .+..+..+.+. =.++|||| ...+.........++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999997654 23333322221 12479999 3334444455567899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
++.|.+++.+.-. ..+...+ +.|+|=|+||+|+.. .....+..+++++..|.-.+|++|+.+|+|+
T Consensus 69 ll~dat~~~~~~p-P~fa~~f----------~~pvIGVITK~Dl~~---~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 69 LLQDATEPRSVFP-PGFASMF----------NKPVIGVITKIDLPS---DDANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred EEecCCCCCccCC-chhhccc----------CCCEEEEEECccCcc---chhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 9999998643221 1222222 669999999999984 2345677788888889888999999999999
Q ss_pred HHHHHHHH
Q 028305 170 DEAFLCVA 177 (210)
Q Consensus 170 ~~~~~~l~ 177 (210)
+++.++|.
T Consensus 135 ~eL~~~L~ 142 (143)
T PF10662_consen 135 EELKDYLE 142 (143)
T ss_pred HHHHHHHh
Confidence 99999874
No 210
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.83 E-value=2.4e-19 Score=145.99 Aligned_cols=161 Identities=24% Similarity=0.289 Sum_probs=103.1
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEE--EEEEEe----CCeE-----E-----EEEEEeCCCccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFV--TKELQM----DDKL-----V-----TLQIWDTAGQER 73 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~-----~-----~~~i~D~~g~~~ 73 (210)
.++..|+++|++++|||||+++|.+.........+.+.+.. ...... .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 45567999999999999999999866544332222211111 111100 0111 1 268999999999
Q ss_pred ccccccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCc-----------
Q 028305 74 FQSLGSAFYRGADCCVLVYDVNV---QKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSR----------- 139 (210)
Q Consensus 74 ~~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~----------- 139 (210)
|..++...++.+|++++|+|+++ +.+++.+.. +.. .++|+++++||+|+...-..
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~-------~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~ 152 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR-------RKTPFVVAANKIDRIPGWKSTEDAPFLESIE 152 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH-------cCCCEEEEEECcCCchhhhhhcCchHHHHHh
Confidence 99888888889999999999987 455544422 111 17899999999998521000
Q ss_pred ---c----cchH---HHHHHHHH--------------cCCCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 140 ---V----VPQK---KALEWCAY--------------RGNIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 140 ---~----~~~~---~~~~~~~~--------------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
. ...+ ++...... .+.++++++||.+|.|+++++..+...+.
T Consensus 153 ~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~ 218 (586)
T PRK04004 153 KQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ 218 (586)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH
Confidence 0 0000 01111111 13477999999999999999998876543
No 211
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.83 E-value=2e-19 Score=130.98 Aligned_cols=171 Identities=20% Similarity=0.162 Sum_probs=111.2
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc------------cc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER------------FQ 75 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------------~~ 75 (210)
...+..+|+|+|.||+|||||.|.+++...........++....-.+... ...++.|+||||-.. +.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHhh
Confidence 35689999999999999999999999988775544444333332223222 347899999999221 11
Q ss_pred ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC-----------cccc--
Q 028305 76 SLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS-----------RVVP-- 142 (210)
Q Consensus 76 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~-----------~~~~-- 142 (210)
+.....+..||++++++|++++..... ...+..+..+. ++|-++|.||.|...... .+..
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys------~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~ 219 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS------KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL 219 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh------cCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence 122344677999999999997433222 22334444433 779999999999743210 1111
Q ss_pred hHHH-HHHHHHc------------CCCcEEEecCCCCCChHHHHHHHHHHHHhcccc
Q 028305 143 QKKA-LEWCAYR------------GNIPYFETSAKEDCNIDEAFLCVAEIALKNEHK 186 (210)
Q Consensus 143 ~~~~-~~~~~~~------------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 186 (210)
..+. ..|.... ..-.+|.+||++|+|++++-++|...+....++
T Consensus 220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~ 276 (379)
T KOG1423|consen 220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWK 276 (379)
T ss_pred hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCC
Confidence 1111 1111111 012389999999999999999999998887773
No 212
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.83 E-value=1.1e-19 Score=148.15 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=110.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC--cCCCcc------------cceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN--KFSQQY------------KATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG 78 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (210)
.+|+++|+.++|||||+.+|+.. .+.... ....++++......+.....++.+|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 48999999999999999999853 222110 1111223333333333345789999999999999889
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc-----
Q 028305 79 SAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR----- 153 (210)
Q Consensus 79 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~----- 153 (210)
..+++.+|++++|+|+.+.. ......|+..+... ++|+++|+||+|+.+... ....+++..+....
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~-------~ip~IVviNKiD~~~a~~-~~v~~ei~~l~~~~g~~~e 152 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL-------GLKPIVVINKIDRPSARP-DEVVDEVFDLFAELGADDE 152 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC-------CCCEEEEEECCCCCCcCH-HHHHHHHHHHHHhhccccc
Confidence 99999999999999998642 23334455554432 779999999999865421 12233444443221
Q ss_pred -CCCcEEEecCCCCC----------ChHHHHHHHHHHHHh
Q 028305 154 -GNIPYFETSAKEDC----------NIDEAFLCVAEIALK 182 (210)
Q Consensus 154 -~~~~~~~~Sa~~~~----------~v~~~~~~l~~~~~~ 182 (210)
..++++++||++|. |+..+|+.+++.+..
T Consensus 153 ~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 153 QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 13679999999995 799999888887653
No 213
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.83 E-value=2.4e-19 Score=131.23 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=79.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCC--------------Ccc--cceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFS--------------QQY--KATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL 77 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (210)
+|+++|+.|+|||||+++|+...-. +.. ....+.........+.....++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999853211 000 001111222222333334478999999999999888
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCC
Q 028305 78 GSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDG 135 (210)
Q Consensus 78 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~ 135 (210)
...+++.+|++++|+|..+.... ....++..+... ++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~-------~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL-------NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc-------CCCEEEEEECccccC
Confidence 88899999999999999876443 233444444332 679999999999875
No 214
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.82 E-value=8.9e-20 Score=132.48 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=95.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCC-------------------------------CcccceeeeEEEEEEEEeCCeEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFS-------------------------------QQYKATIGADFVTKELQMDDKLVT 62 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 62 (210)
+|+++|++++|||||+.+|+...-. .+...+++.+.....+... ...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~--~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE--KYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--CeE
Confidence 5899999999999999998632110 1112233334444444443 467
Q ss_pred EEEEeCCCcccccccccccccCCcEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCC
Q 028305 63 LQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQK-------TFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDG 135 (210)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~ 135 (210)
+.+|||||+.++.......++.+|++++|+|++++. ...... .+.... ... ..|+++|+||+|+..
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~-~~~~~~-~~~-----~~~iiivvNK~Dl~~ 151 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTRE-HALLAR-TLG-----VKQLIVAVNKMDDVT 151 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHH-HHHHHH-HcC-----CCeEEEEEEcccccc
Confidence 999999999888777777788899999999998742 111111 122221 111 358999999999974
Q ss_pred CC----CcccchHHHHHHHHHcC----CCcEEEecCCCCCChH
Q 028305 136 GS----SRVVPQKKALEWCAYRG----NIPYFETSAKEDCNID 170 (210)
Q Consensus 136 ~~----~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~ 170 (210)
.. ......+++..+....+ ..+++++||++|.|++
T Consensus 152 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 152 VNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 21 11222334444444443 2679999999999987
No 215
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=1.8e-18 Score=117.24 Aligned_cols=160 Identities=22% Similarity=0.291 Sum_probs=119.1
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcCC--------Ccc----cceeeeEEEEEEEEeCCeEEEEEEEeCCCccc
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFS--------QQY----KATIGADFVTKELQMDDKLVTLQIWDTAGQER 73 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (210)
...+....||+|.|+.++||||+++++...... ... ..++..++... .+++ ...+.+++||||++
T Consensus 4 ~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~--~~~~-~~~v~LfgtPGq~R 80 (187)
T COG2229 4 AANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI--ELDE-DTGVHLFGTPGQER 80 (187)
T ss_pred ccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccce--EEcC-cceEEEecCCCcHH
Confidence 455678899999999999999999999866531 111 12333344333 2322 24588999999999
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc
Q 028305 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR 153 (210)
Q Consensus 74 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~ 153 (210)
|.-++..+.+.+.++|+++|.+.+..+ .....+..+... . .+|+++++||.|+.+. .+.+.+++.....
T Consensus 81 F~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~-~-----~ip~vVa~NK~DL~~a----~ppe~i~e~l~~~ 149 (187)
T COG2229 81 FKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR-N-----PIPVVVAINKQDLFDA----LPPEKIREALKLE 149 (187)
T ss_pred HHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc-c-----CCCEEEEeeccccCCC----CCHHHHHHHHHhc
Confidence 999999999999999999999998887 223333333222 1 2899999999999864 4556666666555
Q ss_pred -CCCcEEEecCCCCCChHHHHHHHHHH
Q 028305 154 -GNIPYFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 154 -~~~~~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
-..+++++++.++++..+.++.+...
T Consensus 150 ~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 150 LLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred cCCCceeeeecccchhHHHHHHHHHhh
Confidence 24899999999999999999988876
No 216
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=1e-18 Score=120.94 Aligned_cols=164 Identities=21% Similarity=0.203 Sum_probs=114.0
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCC----------ccccc
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG----------QERFQ 75 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~ 75 (210)
+.+.+....|+++|..|+|||||||+|++..-......+.|.+.....+.+++. +.++|.|| .+.+.
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~ 94 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWK 94 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHH
Confidence 344567789999999999999999999986643344445555555666666664 77889999 44555
Q ss_pred ccccccccC---CcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHH
Q 028305 76 SLGSAFYRG---ADCCVLVYDVNVQKTFES--LQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWC 150 (210)
Q Consensus 76 ~~~~~~~~~---~d~vi~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~ 150 (210)
.....|++. -.++++++|+..+..-.. +..|+... ++|+++|+||+|.............+....
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~----------~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l 164 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL----------GIPVIVVLTKADKLKKSERNKQLNKVAEEL 164 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc----------CCCeEEEEEccccCChhHHHHHHHHHHHHh
Confidence 666666643 468999999988654322 22333333 889999999999876433333334444333
Q ss_pred HHcCCCc--EEEecCCCCCChHHHHHHHHHHHHh
Q 028305 151 AYRGNIP--YFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 151 ~~~~~~~--~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
....... ++..|+..+.|++++...|.+.+..
T Consensus 165 ~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 165 KKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred cCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 3333233 8889999999999999999887654
No 217
>PRK12735 elongation factor Tu; Reviewed
Probab=99.82 E-value=6.6e-19 Score=138.20 Aligned_cols=166 Identities=14% Similarity=0.075 Sum_probs=108.9
Q ss_pred ccccccceEEEEEEcCCCCcHHHHHHHHhhC-------cC---------CCcccceeeeEEEEEEEEeCCeEEEEEEEeC
Q 028305 5 VNMKRRNLLKVIVLGDSGVGKTSLMNQYVYN-------KF---------SQQYKATIGADFVTKELQMDDKLVTLQIWDT 68 (210)
Q Consensus 5 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 68 (210)
.-.+..+.++|+++|++++|||||+++|++. .+ ..+...+.+.+... ..+......+.++||
T Consensus 5 ~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~--~~~~~~~~~i~~iDt 82 (396)
T PRK12735 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSH--VEYETANRHYAHVDC 82 (396)
T ss_pred hcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEee--eEEcCCCcEEEEEEC
Confidence 3445678999999999999999999999852 10 01123334444433 333334457899999
Q ss_pred CCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEE-EEEecCCCCCCCC-cccchHHH
Q 028305 69 AGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFV-LLGNKIDTDGGSS-RVVPQKKA 146 (210)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~i-lv~~K~D~~~~~~-~~~~~~~~ 146 (210)
||+.+|.......+..+|++++|+|+........ ...+..+... ++|.+ +++||+|+.+... .+...+++
T Consensus 83 PGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~~-------gi~~iivvvNK~Dl~~~~~~~~~~~~ei 154 (396)
T PRK12735 83 PGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEV 154 (396)
T ss_pred CCHHHHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHHc-------CCCeEEEEEEecCCcchHHHHHHHHHHH
Confidence 9999887777777889999999999987432222 2222222221 66855 6799999974321 22333466
Q ss_pred HHHHHHcC----CCcEEEecCCCCC----------ChHHHHHHHHHHH
Q 028305 147 LEWCAYRG----NIPYFETSAKEDC----------NIDEAFLCVAEIA 180 (210)
Q Consensus 147 ~~~~~~~~----~~~~~~~Sa~~~~----------~v~~~~~~l~~~~ 180 (210)
..++...+ ..+++++||.+|. ++.++++.|...+
T Consensus 155 ~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 155 RELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 66666654 3679999999985 4566666666543
No 218
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.82 E-value=1.4e-19 Score=116.89 Aligned_cols=165 Identities=22% Similarity=0.270 Sum_probs=122.8
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
......++|+++|-.++|||||+..|.+.... ...|+.+ +..+.+.+++ .+.+++||.+|+...+..|..|+.+.|
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd 87 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVD 87 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccc
Confidence 34477899999999999999999999876654 2233443 4455566655 378999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
++|||+|.++...|+.+..-+.++... .+...+|+.+.+||.|+.-..+.+...........+.+...+-++|+..+
T Consensus 88 ~lIyVIDS~D~krfeE~~~el~ELlee---eKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~ 164 (185)
T KOG0074|consen 88 GLIYVIDSTDEKRFEEISEELVELLEE---EKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSL 164 (185)
T ss_pred eEEEEEeCCchHhHHHHHHHHHHHhhh---hhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccc
Confidence 999999988888888887766666543 33347899999999998654322222222222222223467899999999
Q ss_pred CChHHHHHHHHH
Q 028305 167 CNIDEAFLCVAE 178 (210)
Q Consensus 167 ~~v~~~~~~l~~ 178 (210)
+|+.+-.+|+..
T Consensus 165 eg~~dg~~wv~s 176 (185)
T KOG0074|consen 165 EGSTDGSDWVQS 176 (185)
T ss_pred cCccCcchhhhc
Confidence 999988888764
No 219
>PRK12736 elongation factor Tu; Reviewed
Probab=99.81 E-value=1.1e-18 Score=136.85 Aligned_cols=165 Identities=15% Similarity=0.091 Sum_probs=108.2
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcC----------------CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCC
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKF----------------SQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (210)
....+.++|+++|+.++|||||+++|++... ..+...+.+.+.. ...+......+.++||||
T Consensus 7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~--~~~~~~~~~~i~~iDtPG 84 (394)
T PRK12736 7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTA--HVEYETEKRHYAHVDCPG 84 (394)
T ss_pred ccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEE--eeEecCCCcEEEEEECCC
Confidence 3467789999999999999999999985211 0111333344443 333433446788999999
Q ss_pred cccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCC-EEEEEecCCCCCCCCc-ccchHHHHH
Q 028305 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACP-FVLLGNKIDTDGGSSR-VVPQKKALE 148 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K~D~~~~~~~-~~~~~~~~~ 148 (210)
+.+|.......+..+|++++|+|.+....-... ..+..+... ++| +|+++||+|+.+.... +...+++..
T Consensus 85 h~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~-~~~~~~~~~-------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~ 156 (394)
T PRK12736 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQV-------GVPYLVVFLNKVDLVDDEELLELVEMEVRE 156 (394)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHHHHHc-------CCCEEEEEEEecCCcchHHHHHHHHHHHHH
Confidence 998877777777889999999999864322221 222222221 667 6789999999743211 122345666
Q ss_pred HHHHcC----CCcEEEecCCCCC--------ChHHHHHHHHHHHH
Q 028305 149 WCAYRG----NIPYFETSAKEDC--------NIDEAFLCVAEIAL 181 (210)
Q Consensus 149 ~~~~~~----~~~~~~~Sa~~~~--------~v~~~~~~l~~~~~ 181 (210)
++...+ ..+++++||++|. ++.++++.+.+.+.
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 157 LLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 665554 2689999999983 45666666665543
No 220
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=1.6e-18 Score=136.06 Aligned_cols=165 Identities=12% Similarity=0.042 Sum_probs=105.9
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcC----------------CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKF----------------SQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (210)
+..+.++|+++|+.++|||||+++|++... ..+...+.+.+.. ...++..+..+.+|||||+
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~--~~~~~~~~~~~~liDtpGh 85 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTA--HVEYETENRHYAHVDCPGH 85 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeE--EEEEcCCCEEEEEEECCch
Confidence 456789999999999999999999973200 1112234444443 3334444567899999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEE-EEEecCCCCCCCC-cccchHHHHHH
Q 028305 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFV-LLGNKIDTDGGSS-RVVPQKKALEW 149 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~i-lv~~K~D~~~~~~-~~~~~~~~~~~ 149 (210)
++|.......+..+|++++|+|+......... ..+..+... ++|.+ +++||+|+.+... .+...+++..+
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~-------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~ 157 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc-------CCCEEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 98877777777889999999999874322222 222222221 56655 6899999975321 12223456667
Q ss_pred HHHcCC----CcEEEecCCCCC-ChHHHHH---HHHHHHHh
Q 028305 150 CAYRGN----IPYFETSAKEDC-NIDEAFL---CVAEIALK 182 (210)
Q Consensus 150 ~~~~~~----~~~~~~Sa~~~~-~v~~~~~---~l~~~~~~ 182 (210)
+...+. ++++++||.+|. |..++.+ .+++++.+
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~ 198 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE 198 (394)
T ss_pred HHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence 766652 789999999875 3333332 34444444
No 221
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.80 E-value=1.7e-18 Score=126.73 Aligned_cols=161 Identities=20% Similarity=0.170 Sum_probs=121.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc----cccccc---cc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ----SLGSAF---YR 83 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~~~~---~~ 83 (210)
....|.+||.||+|||||++++..........+.++..+....+.+++. ..+.+-|.||..+=. .+-..+ ++
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHH
Confidence 3456889999999999999999988877666677777777777777664 348899999933221 222223 56
Q ss_pred CCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 84 GADCCVLVYDVNVQ---KTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 84 ~~d~vi~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
.++.++||+|++.+ ..|+.+...+.++..+.... .+.|.++|+||+|+.+. ....+.++++......+++
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L--~~rp~liVaNKiD~~ea-----e~~~l~~L~~~lq~~~V~p 346 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGL--ADRPALIVANKIDLPEA-----EKNLLSSLAKRLQNPHVVP 346 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhh--ccCceEEEEeccCchhH-----HHHHHHHHHHHcCCCcEEE
Confidence 78999999999998 88888888777776654432 26799999999998632 1223467777777667999
Q ss_pred ecCCCCCChHHHHHHHHHH
Q 028305 161 TSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~ 179 (210)
+||+.++|+.++++.|.+.
T Consensus 347 vsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 347 VSAKSGEGLEELLNGLREL 365 (366)
T ss_pred eeeccccchHHHHHHHhhc
Confidence 9999999999999988754
No 222
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.80 E-value=1.8e-18 Score=125.48 Aligned_cols=157 Identities=17% Similarity=0.127 Sum_probs=99.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccce--------------eee---------EEEEEE-------------EEeC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKAT--------------IGA---------DFVTKE-------------LQMD 57 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--------------~~~---------~~~~~~-------------~~~~ 57 (210)
||+++|+.++|||||+++|..+.+....... .+. +..... ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999976664211110 000 000000 0011
Q ss_pred CeEEEEEEEeCCCccccccccccccc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCC
Q 028305 58 DKLVTLQIWDTAGQERFQSLGSAFYR--GADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDG 135 (210)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~ 135 (210)
.....+.++||||+.++.......+. .+|++++|+|++....-.. ..++..+... ++|+++|+||+|+.+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~~-------~ip~ivvvNK~D~~~ 152 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALAL-------NIPVFVVVTKIDLAP 152 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCEEEEEECccccC
Confidence 12356889999999988666555554 6899999999886543222 2233333222 779999999999865
Q ss_pred CCCcccchHHHHHHHHH-------------------------cCCCcEEEecCCCCCChHHHHHHHHH
Q 028305 136 GSSRVVPQKKALEWCAY-------------------------RGNIPYFETSAKEDCNIDEAFLCVAE 178 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~Sa~~~~~v~~~~~~l~~ 178 (210)
........+++..+... ....+++.+|+.+|.|+++++..|..
T Consensus 153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 43233333344444331 11358999999999999999987754
No 223
>CHL00071 tufA elongation factor Tu
Probab=99.80 E-value=5.5e-18 Score=133.56 Aligned_cols=156 Identities=14% Similarity=0.072 Sum_probs=104.4
Q ss_pred cccccccceEEEEEEcCCCCcHHHHHHHHhhCcC----------------CCcccceeeeEEEEEEEEeCCeEEEEEEEe
Q 028305 4 SVNMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKF----------------SQQYKATIGADFVTKELQMDDKLVTLQIWD 67 (210)
Q Consensus 4 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 67 (210)
..-....+.++|+++|++++|||||+++|++..- ..+...+.+.+..... +......+.++|
T Consensus 4 ~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~~~~iD 81 (409)
T CHL00071 4 EKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVE--YETENRHYAHVD 81 (409)
T ss_pred hhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEE--EccCCeEEEEEE
Confidence 3445567889999999999999999999986411 0112234444433333 333345688999
Q ss_pred CCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCC-EEEEEecCCCCCCCC-cccchHH
Q 028305 68 TAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACP-FVLLGNKIDTDGGSS-RVVPQKK 145 (210)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K~D~~~~~~-~~~~~~~ 145 (210)
|||+.++.......+..+|++++|+|......-.. ...+..+... ++| +|+++||+|+.+... .+...++
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~~-------g~~~iIvvvNK~D~~~~~~~~~~~~~~ 153 (409)
T CHL00071 82 CPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQV-------GVPNIVVFLNKEDQVDDEELLELVELE 153 (409)
T ss_pred CCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCEEEEEEEccCCCCHHHHHHHHHHH
Confidence 99999887777778889999999999986432222 2222222221 668 778999999975321 2223346
Q ss_pred HHHHHHHcC----CCcEEEecCCCCCCh
Q 028305 146 ALEWCAYRG----NIPYFETSAKEDCNI 169 (210)
Q Consensus 146 ~~~~~~~~~----~~~~~~~Sa~~~~~v 169 (210)
+..+++..+ ..+++++||.+|.|+
T Consensus 154 l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 154 VRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 666666554 268999999998754
No 224
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.7e-19 Score=116.88 Aligned_cols=164 Identities=21% Similarity=0.260 Sum_probs=118.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
...+++++|-.|+|||++..++--+... ...|+++...... ...++++++||..|+-..+..|.-|+.+.|++||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~v----~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVETV----PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcccc----ccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 7889999999999999999888755543 3455555444322 2266899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchH-HHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK-KALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
|+|.+|.+........+..+ +.....++..+++++||.|......+..... ......+. +...++++||.+|+|+
T Consensus 92 VVDssd~dris~a~~el~~m---L~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~-r~~~Iv~tSA~kg~Gl 167 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSM---LQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKD-RIWQIVKTSAVKGEGL 167 (182)
T ss_pred EEeccchhhhhhhHHHHHHH---hccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhh-heeEEEeeccccccCC
Confidence 99999987665544322222 2223333667899999999876433222222 22222333 3488999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 028305 170 DEAFLCVAEIALKN 183 (210)
Q Consensus 170 ~~~~~~l~~~~~~~ 183 (210)
+.+++|+.+-+.+.
T Consensus 168 d~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 168 DPAMDWLQRPLKSR 181 (182)
T ss_pred cHHHHHHHHHHhcc
Confidence 99999999877543
No 225
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.9e-18 Score=138.46 Aligned_cols=158 Identities=21% Similarity=0.213 Sum_probs=118.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc------cccccc--c
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQS------LGSAFY--R 83 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~ 83 (210)
..+|+++|+||+|||||.|+|++........|+++.+.........+.. +.+.|+||--.+.. ....++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 3469999999999999999999998888889999988888888877754 88889999332221 112222 3
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecC
Q 028305 84 GADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSA 163 (210)
Q Consensus 84 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (210)
.+|++|-|.|.+|-+.--.+.-.+.++ +.|++++.|++|......... +.+.+.+..+ ++++++||
T Consensus 81 ~~D~ivnVvDAtnLeRnLyltlQLlE~----------g~p~ilaLNm~D~A~~~Gi~I---D~~~L~~~LG-vPVv~tvA 146 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLTLQLLEL----------GIPMILALNMIDEAKKRGIRI---DIEKLSKLLG-VPVVPTVA 146 (653)
T ss_pred CCCEEEEEcccchHHHHHHHHHHHHHc----------CCCeEEEeccHhhHHhcCCcc---cHHHHHHHhC-CCEEEEEe
Confidence 579999999999865433332222222 789999999999876432233 3344455667 99999999
Q ss_pred CCCCChHHHHHHHHHHHHhccc
Q 028305 164 KEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
++|.|++++...+.+.......
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 147 KRGEGLEELKRAIIELAESKTT 168 (653)
T ss_pred ecCCCHHHHHHHHHHhcccccc
Confidence 9999999999999987766653
No 226
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.79 E-value=2.3e-18 Score=124.69 Aligned_cols=149 Identities=23% Similarity=0.144 Sum_probs=95.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcc-----------------cceeeeEEEE--EEEEe---CCeEEEEEEEeCCCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQY-----------------KATIGADFVT--KELQM---DDKLVTLQIWDTAGQ 71 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~g~ 71 (210)
+|+++|+.|+|||||+++|+........ ....+..... ..+.. ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999865432110 0111112111 11111 355688999999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC----------Cccc
Q 028305 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGS----------SRVV 141 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~----------~~~~ 141 (210)
.++......++..+|++++|+|..+..+... ..++..... .++|+++|+||+|+...+ ....
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~-------~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~ 153 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL-------EGLPIVLVINKIDRLILELKLPPNDAYFKLRH 153 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECcccCcccccCCHHHHHHHHHH
Confidence 9988888888999999999999987765543 233333322 157999999999985211 0111
Q ss_pred chHHHHHHHHHcCC----------CcEEEecCCCCCChH
Q 028305 142 PQKKALEWCAYRGN----------IPYFETSAKEDCNID 170 (210)
Q Consensus 142 ~~~~~~~~~~~~~~----------~~~~~~Sa~~~~~v~ 170 (210)
..+++..++..... ..+++.|++.+-++.
T Consensus 154 ~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 154 IIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 22333444443321 227788998876654
No 227
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.79 E-value=9.4e-18 Score=124.80 Aligned_cols=116 Identities=18% Similarity=0.236 Sum_probs=78.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCccc---------c-----------eeeeEEEEEEEEeCCeEEEEEEEeCCCcc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYK---------A-----------TIGADFVTKELQMDDKLVTLQIWDTAGQE 72 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (210)
.+|+++|++|+|||||+++|+...-.-... . ..+.++......++....++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 579999999999999999997432110000 0 01122333333444455889999999999
Q ss_pred cccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 73 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
+|.......++.+|++|+|+|.++..... ...++..... .++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~-------~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL-------RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh-------cCCCEEEEEECCccCCC
Confidence 88877777889999999999998753322 2233333322 17799999999997543
No 228
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.78 E-value=1.1e-17 Score=119.61 Aligned_cols=162 Identities=17% Similarity=0.227 Sum_probs=97.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeee-EEE--EEEEEeCCeEEEEEEEeCCCccccccccccc-----cc
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGA-DFV--TKELQMDDKLVTLQIWDTAGQERFQSLGSAF-----YR 83 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~ 83 (210)
+++|+++|.+|+|||||+|.|++...........+. ... ...+.. .....+.+|||||..+.......+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999999976543221111110 110 111111 112368999999965432222222 56
Q ss_pred CCcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC---------cccchHHHHHHHH--
Q 028305 84 GADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS---------RVVPQKKALEWCA-- 151 (210)
Q Consensus 84 ~~d~vi~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~---------~~~~~~~~~~~~~-- 151 (210)
.+|+++++.+- .+... ..|+..+... +.|+++|+||+|+..... .....+++++.+.
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~-------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 148 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM-------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN 148 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh-------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence 78888887432 22222 3444555443 569999999999843211 1122222222222
Q ss_pred --H--cCCCcEEEecCC--CCCChHHHHHHHHHHHHhccc
Q 028305 152 --Y--RGNIPYFETSAK--EDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 152 --~--~~~~~~~~~Sa~--~~~~v~~~~~~l~~~~~~~~~ 185 (210)
. .....++.+|+. .+.++..+.+.++..+.+.++
T Consensus 149 ~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 149 LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 2 123578999998 679999999999999987654
No 229
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.78 E-value=5.5e-19 Score=138.39 Aligned_cols=168 Identities=21% Similarity=0.271 Sum_probs=120.3
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
-...++|+++|+.|+||||||-+|....|.+..++....-. ....+....+...+.|++...+-.......++.+|++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~--IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRIL--IPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccc--cCCccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 35689999999999999999999999998865444332222 2234445557789999987666556667778999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcC-CCcEEEecCCCC
Q 028305 89 VLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRG-NIPYFETSAKED 166 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~ 166 (210)
+++|+++++.+++.+. +|+..+.+... ...++|+|+|+||+|......... +....-+...+. .-..+++||++.
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~--~~~~~PVILvGNK~d~~~~~~~s~-e~~~~pim~~f~EiEtciecSA~~~ 160 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFG--DYHETPVILVGNKSDNGDNENNSD-EVNTLPIMIAFAEIETCIECSALTL 160 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccC--CCccCCEEEEeeccCCccccccch-hHHHHHHHHHhHHHHHHHhhhhhhh
Confidence 9999999999999986 56655554431 123789999999999975532211 112222222222 234899999999
Q ss_pred CChHHHHHHHHHHHH
Q 028305 167 CNIDEAFLCVAEIAL 181 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~ 181 (210)
.++.++|...-.++.
T Consensus 161 ~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 161 ANVSELFYYAQKAVI 175 (625)
T ss_pred hhhHhhhhhhhheee
Confidence 999999988766653
No 230
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=7.7e-18 Score=131.53 Aligned_cols=169 Identities=22% Similarity=0.227 Sum_probs=124.6
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCC-eEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDD-KLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
.+++-|+++|+..-|||||+..+...........+.+....-..+..+. ....+.|+|||||+.|..+...-..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 3567799999999999999999998888777666676666655555542 235699999999999999999999999999
Q ss_pred EEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHH---HHHHHcCCCcEEEec
Q 028305 89 VLVYDVNVQ---KTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKAL---EWCAYRGNIPYFETS 162 (210)
Q Consensus 89 i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~S 162 (210)
|||+++++. ++.+.+.. .+.. ++|+++++||+|..+..+..+..+... .--...+.+.++++|
T Consensus 83 ILVVa~dDGv~pQTiEAI~h----ak~a-------~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvS 151 (509)
T COG0532 83 ILVVAADDGVMPQTIEAINH----AKAA-------GVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVS 151 (509)
T ss_pred EEEEEccCCcchhHHHHHHH----HHHC-------CCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEee
Confidence 999999984 44444322 2111 889999999999986543222222111 111222357799999
Q ss_pred CCCCCChHHHHHHHHHHHHhccccccc
Q 028305 163 AKEDCNIDEAFLCVAEIALKNEHKDIY 189 (210)
Q Consensus 163 a~~~~~v~~~~~~l~~~~~~~~~~~~~ 189 (210)
|++|+|+.+|+..++-.+...+.+...
T Consensus 152 A~tg~Gi~eLL~~ill~aev~elka~~ 178 (509)
T COG0532 152 AKTGEGIDELLELILLLAEVLELKANP 178 (509)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhhhcCC
Confidence 999999999999999888777554443
No 231
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.7e-17 Score=122.34 Aligned_cols=162 Identities=21% Similarity=0.220 Sum_probs=116.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCc-cc-cccc-------ccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ-ER-FQSL-------GSA 80 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-~~-~~~~-------~~~ 80 (210)
...+.|+|.|.||+|||||++++.+......+.|.++-.....++...+ ..++++||||. ++ .... ...
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 4678999999999999999999999988877777777777777776655 67899999991 11 1111 111
Q ss_pred cccCCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcE
Q 028305 81 FYRGADCCVLVYDVNVQK--TFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPY 158 (210)
Q Consensus 81 ~~~~~d~vi~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
.-.-.++++|+||.+... +.+.-..++..+.... +.|+++|.||+|.... ...+++.......+....
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f------~~p~v~V~nK~D~~~~----e~~~~~~~~~~~~~~~~~ 313 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF------KAPIVVVINKIDIADE----EKLEEIEASVLEEGGEEP 313 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc------CCCeEEEEecccccch----hHHHHHHHHHHhhccccc
Confidence 122368999999998754 4455556666766554 4699999999998742 233444444555555667
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhc
Q 028305 159 FETSAKEDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 159 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 183 (210)
..+++..+.+++.+-..+...+.+.
T Consensus 314 ~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 314 LKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred cceeeeehhhHHHHHHHHHHHhhch
Confidence 8889999999998888887776554
No 232
>PLN03126 Elongation factor Tu; Provisional
Probab=99.77 E-value=2.9e-17 Score=130.78 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=102.3
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcC----------------CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKF----------------SQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (210)
...+.++|+++|++++|||||+++|+.... ..+...+.+++.....+..+ ...+.++|+||+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--~~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--CcEEEEEECCCH
Confidence 356789999999999999999999985211 11223334444433334333 457899999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCC-EEEEEecCCCCCCCC-cccchHHHHHH
Q 028305 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACP-FVLLGNKIDTDGGSS-RVVPQKKALEW 149 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K~D~~~~~~-~~~~~~~~~~~ 149 (210)
.+|.......+..+|++++|+|......-.. ..++..+... ++| +++++||+|+.+.+. .+...+++..+
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~-------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~ 226 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV-------GVPNMVVFLNKQDQVDDEELLELVELEVREL 226 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCeEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 9998888888889999999999986533332 2233333222 667 788999999975321 22233456666
Q ss_pred HHHcC----CCcEEEecCCCCCC
Q 028305 150 CAYRG----NIPYFETSAKEDCN 168 (210)
Q Consensus 150 ~~~~~----~~~~~~~Sa~~~~~ 168 (210)
+...+ ..+++++|+.+|.+
T Consensus 227 l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 227 LSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHhcCCCcCcceEEEEEcccccc
Confidence 66542 47899999998854
No 233
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.77 E-value=1.4e-18 Score=137.69 Aligned_cols=153 Identities=19% Similarity=0.239 Sum_probs=104.8
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcC-------------------------------CCcccceeeeEEEEEEEEeC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKF-------------------------------SQQYKATIGADFVTKELQMD 57 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 57 (210)
..+.++|+++|+.++|||||+.+|+...- ..+...+.+++. ....+.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~--~~~~~~ 81 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDI--ALWKFE 81 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEE--EEEEec
Confidence 46789999999999999999998873211 011122233333 333344
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHH-------HHHHHHHHHHHhcCCCCCCCC-CEEEEEe
Q 028305 58 DKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFE-------SLQNWREEFLKQADPGEHEAC-PFVLLGN 129 (210)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~-------~~~~~~~~l~~~~~~~~~~~~-p~ilv~~ 129 (210)
..+..+.++|+||+.+|.......+..+|++|+|+|+++. .++ .....+..+... ++ ++|+++|
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~-------gi~~iIV~vN 153 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL-------GVKQMICCCN 153 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc-------CCCcEEEEEE
Confidence 4557899999999999999999999999999999999873 222 222222222111 56 4788999
Q ss_pred cCCCCCCC----CcccchHHHHHHHHHcC----CCcEEEecCCCCCChHH
Q 028305 130 KIDTDGGS----SRVVPQKKALEWCAYRG----NIPYFETSAKEDCNIDE 171 (210)
Q Consensus 130 K~D~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~ 171 (210)
|+|+.+.. ......+++..+++..+ .++++++||.+|+|+.+
T Consensus 154 KmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 154 KMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 99986211 12334567777777666 36799999999999864
No 234
>COG2262 HflX GTPases [General function prediction only]
Probab=99.77 E-value=2.2e-17 Score=125.22 Aligned_cols=166 Identities=20% Similarity=0.139 Sum_probs=119.7
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccc--cccc------c
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERF--QSLG------S 79 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~------~ 79 (210)
.....+.|.++|..|+|||||+|+|.+........-..+.+.+...+...+ ...+.+-||-|.-.. ..+. .
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence 345788999999999999999999997766555555566677677776654 355788899994431 1111 2
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEE
Q 028305 80 AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYF 159 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
.....+|+++.|+|+++|...+.+......+...... .+|+|+|.||+|+..... ......... ...+
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~----~~p~i~v~NKiD~~~~~~-------~~~~~~~~~-~~~v 334 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGAD----EIPIILVLNKIDLLEDEE-------ILAELERGS-PNPV 334 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCC----CCCEEEEEecccccCchh-------hhhhhhhcC-CCeE
Confidence 2246799999999999997777766666666554222 689999999999875421 222222222 2689
Q ss_pred EecCCCCCChHHHHHHHHHHHHhcccc
Q 028305 160 ETSAKEDCNIDEAFLCVAEIALKNEHK 186 (210)
Q Consensus 160 ~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 186 (210)
.+||++|.|++.+++.|.+.+......
T Consensus 335 ~iSA~~~~gl~~L~~~i~~~l~~~~~~ 361 (411)
T COG2262 335 FISAKTGEGLDLLRERIIELLSGLRTE 361 (411)
T ss_pred EEEeccCcCHHHHHHHHHHHhhhcccc
Confidence 999999999999999999998865443
No 235
>PRK00049 elongation factor Tu; Reviewed
Probab=99.77 E-value=2.8e-17 Score=129.01 Aligned_cols=153 Identities=13% Similarity=0.081 Sum_probs=101.0
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcC----------------CCcccceeeeEEEEEEEEeCCeEEEEEEEeCC
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKF----------------SQQYKATIGADFVTKELQMDDKLVTLQIWDTA 69 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 69 (210)
-.+..+.++|+++|+.++|||||+++|++... ..+...+.+.+... ..+......+.++|||
T Consensus 6 ~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~--~~~~~~~~~i~~iDtP 83 (396)
T PRK00049 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAH--VEYETEKRHYAHVDCP 83 (396)
T ss_pred ccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeE--EEEcCCCeEEEEEECC
Confidence 34567889999999999999999999986311 01123344444433 3333334568899999
Q ss_pred CcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEE-EEEecCCCCCCCC-cccchHHHH
Q 028305 70 GQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFV-LLGNKIDTDGGSS-RVVPQKKAL 147 (210)
Q Consensus 70 g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~i-lv~~K~D~~~~~~-~~~~~~~~~ 147 (210)
|+.+|.......+..+|++++|+|......-.. ...+..+... ++|.+ +++||+|+.+... .+...+++.
T Consensus 84 G~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~~-------g~p~iiVvvNK~D~~~~~~~~~~~~~~i~ 155 (396)
T PRK00049 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHHc-------CCCEEEEEEeecCCcchHHHHHHHHHHHH
Confidence 998887777778899999999999986532222 2222333222 67876 6899999974321 122334555
Q ss_pred HHHHHcC----CCcEEEecCCCCCC
Q 028305 148 EWCAYRG----NIPYFETSAKEDCN 168 (210)
Q Consensus 148 ~~~~~~~----~~~~~~~Sa~~~~~ 168 (210)
.+....+ ..+++++||.+|.+
T Consensus 156 ~~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 156 ELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHHHhcCCCccCCcEEEeecccccC
Confidence 5555543 37899999998753
No 236
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.76 E-value=2e-17 Score=123.77 Aligned_cols=113 Identities=22% Similarity=0.313 Sum_probs=77.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcc------------------cceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQY------------------KATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ 75 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (210)
+|+++|++|+|||||+++|+........ ....+.......+..+ ...+.+|||||+.++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence 5899999999999999999753221000 0011122222233333 3678999999998887
Q ss_pred ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 76 SLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 76 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
......++.+|++++|+|.++.........| ..+... ++|.++++||+|+...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~~-------~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADEA-------GIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHHc-------CCCEEEEEECCccCCC
Confidence 7888889999999999999886554433222 233221 6799999999998653
No 237
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.76 E-value=4.1e-17 Score=121.93 Aligned_cols=144 Identities=15% Similarity=0.201 Sum_probs=96.5
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCc----------ccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc---
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQ----------YKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL--- 77 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--- 77 (210)
..|+|+|+|.+|+|||||+|+|++..+... ..++.........+..++..+.+.+|||||..+....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 478999999999999999999998776533 2344455555666667788899999999994432110
Q ss_pred -----------------------cccccc--CCcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCCEEEEEecC
Q 028305 78 -----------------------GSAFYR--GADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKI 131 (210)
Q Consensus 78 -----------------------~~~~~~--~~d~vi~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~~~p~ilv~~K~ 131 (210)
....+. .+|+++|+++.+... .... ...++.+. . ++|+++|+||+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~---~-----~v~vi~VinK~ 153 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS---K-----RVNIIPVIAKA 153 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh---c-----cCCEEEEEECC
Confidence 101222 467888888876421 1111 22233332 1 57999999999
Q ss_pred CCCCCCCcccchHHHHHHHHHcCCCcEEEecCC
Q 028305 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK 164 (210)
Q Consensus 132 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (210)
|+..........+.+.+.+..++ +.++.....
T Consensus 154 D~l~~~e~~~~k~~i~~~l~~~~-i~~~~~~~~ 185 (276)
T cd01850 154 DTLTPEELKEFKQRIMEDIEEHN-IKIYKFPED 185 (276)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcC-CceECCCCC
Confidence 99654334556677777788777 788876653
No 238
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.76 E-value=3.8e-18 Score=123.26 Aligned_cols=165 Identities=19% Similarity=0.258 Sum_probs=103.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcc-cceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc-----ccccccCCcE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQY-KATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL-----GSAFYRGADC 87 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~~~~~d~ 87 (210)
||+++|+.+|||||+.+.+..+..+.+. .-+.+.+.....+... ..+.+.+||+||+..+... ....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 7999999999999999888765544222 2223334433333322 3478999999998766554 3566799999
Q ss_pred EEEEEECCChhhHHHHHHH---HHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccc----hHHHHHHHHHcC--CCcE
Q 028305 88 CVLVYDVNVQKTFESLQNW---REEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVP----QKKALEWCAYRG--NIPY 158 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~---~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~----~~~~~~~~~~~~--~~~~ 158 (210)
+|||+|+.+.+..+.+.++ +..+.+... ++.+.++++|+|+.....+... .+++.+.+...+ .+.+
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-----~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~ 154 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-----NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITF 154 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHST-----T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEE
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-----CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEE
Confidence 9999999855544444444 334444433 7789999999999765433322 233333444333 3678
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 159 FETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 159 ~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
+.||..+ ..+-++|..+++.+..+..
T Consensus 155 ~~TSI~D-~Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 155 FLTSIWD-ESLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp EEE-TTS-THHHHHHHHHHHTTSTTHC
T ss_pred EeccCcC-cHHHHHHHHHHHHHcccHH
Confidence 9999888 5999999999999876544
No 239
>PLN03127 Elongation factor Tu; Provisional
Probab=99.75 E-value=4.3e-17 Score=129.15 Aligned_cols=165 Identities=16% Similarity=0.096 Sum_probs=103.8
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhC------cC----------CCcccceeeeEEEEEEEEeCCeEEEEEEEeCC
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYN------KF----------SQQYKATIGADFVTKELQMDDKLVTLQIWDTA 69 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 69 (210)
.....+.++|+++|+.++|||||+++|.+. .. ..+...+.+++.....+. ....++.++|||
T Consensus 55 ~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~--~~~~~i~~iDtP 132 (447)
T PLN03127 55 FTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE--TAKRHYAHVDCP 132 (447)
T ss_pred hhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc--CCCeEEEEEECC
Confidence 344578899999999999999999999621 10 112234445554444433 344678999999
Q ss_pred CcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCC-EEEEEecCCCCCCCCc-ccchHHHH
Q 028305 70 GQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACP-FVLLGNKIDTDGGSSR-VVPQKKAL 147 (210)
Q Consensus 70 g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K~D~~~~~~~-~~~~~~~~ 147 (210)
|+.+|.......+..+|++++|+|......-.. ...+..+... ++| +|+++||+|+.+.... +...+++.
T Consensus 133 Gh~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~-------gip~iIvviNKiDlv~~~~~~~~i~~~i~ 204 (447)
T PLN03127 133 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV-------GVPSLVVFLNKVDVVDDEELLELVEMELR 204 (447)
T ss_pred CccchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc-------CCCeEEEEEEeeccCCHHHHHHHHHHHHH
Confidence 998887777667778999999999876432222 2222222221 678 5788999999753211 11222444
Q ss_pred HHHHHcC----CCcEEEecCC---CCCC-------hHHHHHHHHHHH
Q 028305 148 EWCAYRG----NIPYFETSAK---EDCN-------IDEAFLCVAEIA 180 (210)
Q Consensus 148 ~~~~~~~----~~~~~~~Sa~---~~~~-------v~~~~~~l~~~~ 180 (210)
.+....+ .++++++|+. +|.| +.++++.+.+.+
T Consensus 205 ~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 205 ELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 4444322 3678888875 5555 556666665544
No 240
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.75 E-value=1.7e-16 Score=116.81 Aligned_cols=161 Identities=20% Similarity=0.172 Sum_probs=117.1
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc-------ccccccc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER-------FQSLGSA 80 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~ 80 (210)
.+.-..+|+++|+|++|||||+++|.+........+.++.......+.+++ .++++.|+||.-+ -......
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vls 136 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLS 136 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeee
Confidence 456678999999999999999999998877766667777777788888877 6789999998221 1234567
Q ss_pred cccCCcEEEEEEECCChhh-HHHHHHHHHHH-------------------------------------------------
Q 028305 81 FYRGADCCVLVYDVNVQKT-FESLQNWREEF------------------------------------------------- 110 (210)
Q Consensus 81 ~~~~~d~vi~v~d~~~~~s-~~~~~~~~~~l------------------------------------------------- 110 (210)
.+++||++++|+|+..+.. .+.+...+...
T Consensus 137 v~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA 216 (365)
T COG1163 137 VARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNA 216 (365)
T ss_pred eeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccc
Confidence 7899999999999986554 33333322221
Q ss_pred -------------HHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHH
Q 028305 111 -------------LKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177 (210)
Q Consensus 111 -------------~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 177 (210)
......+ ..-+|.+.|.||.|+.+ .++...+.+. ..++++||+.+.|++++.+.|-
T Consensus 217 ~V~Ir~dvTlDd~id~l~~n-rvY~p~l~v~NKiD~~~-------~e~~~~l~~~---~~~v~isa~~~~nld~L~e~i~ 285 (365)
T COG1163 217 DVLIREDVTLDDLIDALEGN-RVYKPALYVVNKIDLPG-------LEELERLARK---PNSVPISAKKGINLDELKERIW 285 (365)
T ss_pred eEEEecCCcHHHHHHHHhhc-ceeeeeEEEEecccccC-------HHHHHHHHhc---cceEEEecccCCCHHHHHHHHH
Confidence 1111111 11579999999999875 2444444443 3799999999999999999999
Q ss_pred HHHH
Q 028305 178 EIAL 181 (210)
Q Consensus 178 ~~~~ 181 (210)
+.+-
T Consensus 286 ~~L~ 289 (365)
T COG1163 286 DVLG 289 (365)
T ss_pred HhhC
Confidence 8864
No 241
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.75 E-value=2.2e-17 Score=131.98 Aligned_cols=156 Identities=17% Similarity=0.130 Sum_probs=98.9
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCc---------------------------------ccceeeeEEEEEEEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQ---------------------------------YKATIGADFVTKELQ 55 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~ 55 (210)
....++|+++|++++|||||+.+|+...-.-. ...+.+++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 46789999999999999999999974421100 011222344333333
Q ss_pred eCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCC
Q 028305 56 MDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDG 135 (210)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~ 135 (210)
. ....+.++||||+.+|.......+..+|++++|+|+.....-.....+ ..+ .... ..|+++++||+|+.+
T Consensus 104 ~--~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~-~~lg-----~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 104 T--EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIA-TLLG-----IKHLVVAVNKMDLVD 174 (474)
T ss_pred c--CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHH-HHhC-----CCceEEEEEeecccc
Confidence 3 346789999999998876666667899999999999764321111111 111 1111 237899999999974
Q ss_pred CCC--cccchHHHHHHHHHcC---CCcEEEecCCCCCChHHHH
Q 028305 136 GSS--RVVPQKKALEWCAYRG---NIPYFETSAKEDCNIDEAF 173 (210)
Q Consensus 136 ~~~--~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~ 173 (210)
... .....+++..+....+ ..+++++||++|.|+.++-
T Consensus 175 ~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 175 YSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred chhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 321 1122223333333322 4789999999999998753
No 242
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.74 E-value=2e-17 Score=130.22 Aligned_cols=150 Identities=19% Similarity=0.169 Sum_probs=96.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCC---------------------------------CcccceeeeEEEEEEEEeCCe
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFS---------------------------------QQYKATIGADFVTKELQMDDK 59 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~ 59 (210)
++|+++|+.++|||||+.+|+...-. .+...+.+++.....+..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~-- 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD-- 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence 58999999999999999998633211 0111122334443444333
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCc
Q 028305 60 LVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSR 139 (210)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~ 139 (210)
..++.++||||+.+|.......+..+|++++|+|......-.....+ ..+. ... ..++++++||+|+.+....
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~-~~~-----~~~iivviNK~D~~~~~~~ 151 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIAS-LLG-----IRHVVLAVNKMDLVDYDEE 151 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHH-HcC-----CCcEEEEEEecccccchHH
Confidence 45789999999999877777778899999999999865322222222 1121 111 2368999999999753211
Q ss_pred --ccchHHHHHHHHHcC--CCcEEEecCCCCCChHH
Q 028305 140 --VVPQKKALEWCAYRG--NIPYFETSAKEDCNIDE 171 (210)
Q Consensus 140 --~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~ 171 (210)
....++...+....+ ..+++++||++|.|+.+
T Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 112233444444443 35799999999999986
No 243
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.74 E-value=4.3e-17 Score=121.37 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=91.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCC------------------CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFS------------------QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ 75 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (210)
+|+++|++|+|||||+++|+...-. .+...+.+++.....+... ..++.+|||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence 5899999999999999999732110 1112233333333444444 4678999999999888
Q ss_pred ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCC
Q 028305 76 SLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGN 155 (210)
Q Consensus 76 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
..+...++.+|++++|+|..+...-.. ...+..+... ++|+++++||+|+.+.. .....++++........
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~-------~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~~~~ 149 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY-------NVPRIAFVNKMDRTGAD-FFRVVEQIREKLGANPV 149 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc-------CCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCce
Confidence 888889999999999999987532222 2233333322 67999999999987532 22334444444433333
Q ss_pred CcEEEecCCC
Q 028305 156 IPYFETSAKE 165 (210)
Q Consensus 156 ~~~~~~Sa~~ 165 (210)
..++++|+..
T Consensus 150 ~~~~Pisa~~ 159 (270)
T cd01886 150 PLQLPIGEED 159 (270)
T ss_pred EEEeccccCC
Confidence 3467777753
No 244
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.74 E-value=5.9e-17 Score=128.58 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=103.0
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcC-------------------------------CCcccceeeeEEEEEEEEeC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKF-------------------------------SQQYKATIGADFVTKELQMD 57 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 57 (210)
+.+.++|+++|+.++|||||+.+|+...- ..+...+.+++.....+ .
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~--~ 81 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF--E 81 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE--c
Confidence 46789999999999999999999874210 01122333444433333 3
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhh---H---HHHHHHHHHHHHhcCCCCCCCCC-EEEEEec
Q 028305 58 DKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKT---F---ESLQNWREEFLKQADPGEHEACP-FVLLGNK 130 (210)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K 130 (210)
.....+.++||||+.+|.......+..+|++++|+|.+.... + ......+..+... ++| +|+++||
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-------gi~~iiv~vNK 154 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-------GVKQMIVCINK 154 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-------CCCeEEEEEEc
Confidence 445779999999999998888888899999999999986421 0 1112222222222 556 6799999
Q ss_pred CCCCC--C--CCcccchHHHHHHHHHcC----CCcEEEecCCCCCChHH
Q 028305 131 IDTDG--G--SSRVVPQKKALEWCAYRG----NIPYFETSAKEDCNIDE 171 (210)
Q Consensus 131 ~D~~~--~--~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~ 171 (210)
+|... . .......+++..++...+ .++++++|+.+|+|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 155 MDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 99532 1 113344555566555544 37799999999999964
No 245
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.74 E-value=3.6e-17 Score=118.24 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=78.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCC--C--------------cccceeeeEEEEEEEEeC--------CeEEEEEEEeCC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFS--Q--------------QYKATIGADFVTKELQMD--------DKLVTLQIWDTA 69 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 69 (210)
+|+++|+.++|||||+.+|+...-. . +...+.++.......... +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999854311 0 001111111111122222 446889999999
Q ss_pred CcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCC
Q 028305 70 GQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTD 134 (210)
Q Consensus 70 g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~ 134 (210)
|+.+|......+++.+|++++|+|+...........+ ...... ++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~~-------~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALKE-------RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHHc-------CCCEEEEEECCCcc
Confidence 9999999999999999999999999986554442222 222211 67999999999985
No 246
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=6e-17 Score=126.31 Aligned_cols=162 Identities=18% Similarity=0.174 Sum_probs=121.3
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC---------------Ccccceeee--EEEEEEEEeCCeEEEEEEEeCCCcc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS---------------QQYKATIGA--DFVTKELQMDDKLVTLQIWDTAGQE 72 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (210)
+...++.++-+..-|||||..+|+...-. .+...++++ +..... ..++..+.++++|||||-
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasif-y~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIF-YKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEE-EEcCCceEEEeecCCCcc
Confidence 56788999999999999999998733221 112222222 222222 233677999999999999
Q ss_pred cccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH
Q 028305 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY 152 (210)
Q Consensus 73 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~ 152 (210)
+|.......+..++++++++|.+.....+.+..++..+.. +..+|.|+||+|+..+....+.. .+......
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~--------~L~iIpVlNKIDlp~adpe~V~~-q~~~lF~~ 207 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA--------GLAIIPVLNKIDLPSADPERVEN-QLFELFDI 207 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc--------CCeEEEeeeccCCCCCCHHHHHH-HHHHHhcC
Confidence 9999999999999999999999988777777777777754 67899999999998875433322 23333332
Q ss_pred cCCCcEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 153 RGNIPYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
. ..+++.+||++|.|++++++++++++..
T Consensus 208 ~-~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 208 P-PAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred C-ccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 2 3589999999999999999999988743
No 247
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.6e-16 Score=124.04 Aligned_cols=167 Identities=19% Similarity=0.191 Sum_probs=122.2
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
+++.-|.++|+..-|||||+..|.+.........+++..+.-..+... ..-.++|.|||||..|..+..+...-+|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 467789999999999999999999888876666666655555555554 2367999999999999999999999999999
Q ss_pred EEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHH---HHHHHHcCCCcEEEecC
Q 028305 90 LVYDVNVQ---KTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKA---LEWCAYRGNIPYFETSA 163 (210)
Q Consensus 90 ~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~Sa 163 (210)
+|+..+|. ++.+.+. ... ..++|+|+.+||+|.++..+..+..+.. ...-..-|+++++++||
T Consensus 230 LVVAadDGVmpQT~EaIk----hAk-------~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSA 298 (683)
T KOG1145|consen 230 LVVAADDGVMPQTLEAIK----HAK-------SANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISA 298 (683)
T ss_pred EEEEccCCccHhHHHHHH----HHH-------hcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeec
Confidence 99999884 3333321 111 1288999999999987654322222211 11112234688999999
Q ss_pred CCCCChHHHHHHHHHHHHhcccccc
Q 028305 164 KEDCNIDEAFLCVAEIALKNEHKDI 188 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~~~~~~~~~~~ 188 (210)
++|.|++.|-+.+.-.+.-..-+..
T Consensus 299 l~g~nl~~L~eaill~Ae~mdLkA~ 323 (683)
T KOG1145|consen 299 LTGENLDLLEEAILLLAEVMDLKAD 323 (683)
T ss_pred ccCCChHHHHHHHHHHHHHhhcccC
Confidence 9999999999998877655544433
No 248
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.73 E-value=6.8e-17 Score=133.88 Aligned_cols=155 Identities=18% Similarity=0.154 Sum_probs=98.3
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCc---------------------------------ccceeeeEEEEEEE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQ---------------------------------YKATIGADFVTKEL 54 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~ 54 (210)
.....++|+++|++++|||||+++|+...-.-. ...+.+++.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 456789999999999999999999985332100 01122233333333
Q ss_pred EeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCC
Q 028305 55 QMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTD 134 (210)
Q Consensus 55 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~ 134 (210)
... ...+.++||||+.++.......+..+|++++|+|......-..... +..+... . ..|+++++||+|+.
T Consensus 100 ~~~--~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~~-~-----~~~iivvvNK~D~~ 170 (632)
T PRK05506 100 ATP--KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIASLL-G-----IRHVVLAVNKMDLV 170 (632)
T ss_pred ccC--CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHHHHh-C-----CCeEEEEEEecccc
Confidence 333 3568899999998887666667889999999999976432221111 1222211 1 24789999999997
Q ss_pred CCCC--cccchHHHHHHHHHcC--CCcEEEecCCCCCChHH
Q 028305 135 GGSS--RVVPQKKALEWCAYRG--NIPYFETSAKEDCNIDE 171 (210)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~ 171 (210)
+... ......++..+....+ ..+++++||++|.|+.+
T Consensus 171 ~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 171 DYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 4211 1122233444444444 25699999999999984
No 249
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.72 E-value=7.1e-17 Score=127.80 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=108.4
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcC---CCcccceeeeEEEEEEE---------------EeC------------
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKF---SQQYKATIGADFVTKEL---------------QMD------------ 57 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~------------ 57 (210)
.++..++|.++|+...|||||+.+|.+... ..+...+.+++...... ...
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 567899999999999999999999985432 22222222222111110 000
Q ss_pred ----CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCC
Q 028305 58 ----DKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQK-TFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132 (210)
Q Consensus 58 ----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D 132 (210)
.....+.++|+||+++|.......+..+|++++|+|++.+. ....... +..+ .... -.|+|+|+||+|
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~eh-l~i~-~~lg-----i~~iIVvlNKiD 182 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEH-LAAV-EIMK-----LKHIIILQNKID 182 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHH-HHHH-HHcC-----CCcEEEEEeccc
Confidence 00236889999999999888778888999999999998641 2222222 2222 2111 236899999999
Q ss_pred CCCCCCcccchHHHHHHHHHc--CCCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 133 TDGGSSRVVPQKKALEWCAYR--GNIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
+.+........+++..+.... ...+++++||++|.|+++|++.|.+.+.
T Consensus 183 lv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 183 LVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred ccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 975322223334444444321 2478999999999999999999987554
No 250
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.72 E-value=2.4e-16 Score=127.07 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=80.6
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCC----Cc----------------ccceeeeEEEEEEEEeCCeEEEEEEEeC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFS----QQ----------------YKATIGADFVTKELQMDDKLVTLQIWDT 68 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 68 (210)
.....+|+++|++++|||||+++|+...-. .. .....++.+......+....+.+++|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 356789999999999999999999731110 00 0001122232333333334578999999
Q ss_pred CCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCC
Q 028305 69 AGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDG 135 (210)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~ 135 (210)
||+.+|......+++.+|++|+|+|..+..... ...++..... .++|+++++||+|+..
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~-------~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL-------RDTPIFTFINKLDRDG 145 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh-------cCCCEEEEEECCcccc
Confidence 999998887888899999999999998753222 2333333322 1789999999999864
No 251
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.72 E-value=3.3e-16 Score=118.79 Aligned_cols=164 Identities=19% Similarity=0.221 Sum_probs=99.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEe---------------------CC-eEEEEEEEeCCCc-
Q 028305 15 VIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQM---------------------DD-KLVTLQIWDTAGQ- 71 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~g~- 71 (210)
|+++|.|++|||||+++|++........|..+.+.......+ ++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987654333333333333322221 22 3467999999996
Q ss_pred ---ccccccccc---cccCCcEEEEEEECCC---------------h-hhHHHH----HHH--------HHHHHH-----
Q 028305 72 ---ERFQSLGSA---FYRGADCCVLVYDVNV---------------Q-KTFESL----QNW--------REEFLK----- 112 (210)
Q Consensus 72 ---~~~~~~~~~---~~~~~d~vi~v~d~~~---------------~-~s~~~~----~~~--------~~~l~~----- 112 (210)
.+...+... .++++|++++|+|+.. | +.++.+ ..| +..+.+
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333333 4889999999999973 1 111111 111 000000
Q ss_pred ------------------------hc---C-CC-----------------CCCCCCEEEEEecCCCCCCCCcccchHHHH
Q 028305 113 ------------------------QA---D-PG-----------------EHEACPFVLLGNKIDTDGGSSRVVPQKKAL 147 (210)
Q Consensus 113 ------------------------~~---~-~~-----------------~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~ 147 (210)
.+ . .. .....|+|+|+||.|+... ....+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~---~~~~~--- 234 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA---ENNIS--- 234 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh---HHHHH---
Confidence 00 0 00 0125799999999997532 11111
Q ss_pred HHHHHcCCCcEEEecCCCCCChHHHHH-HHHHHHHhcc
Q 028305 148 EWCAYRGNIPYFETSAKEDCNIDEAFL-CVAEIALKNE 184 (210)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~-~l~~~~~~~~ 184 (210)
.+........++++||+.+.++.++.+ .+.+.+....
T Consensus 235 ~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 235 KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS 272 (318)
T ss_pred HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence 222233346799999999999999997 5888876553
No 252
>PRK13351 elongation factor G; Reviewed
Probab=99.71 E-value=1.9e-16 Score=132.59 Aligned_cols=118 Identities=18% Similarity=0.242 Sum_probs=83.1
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCC-------------Ccc-----cceeeeEEEEEEEEeCCeEEEEEEEeCCC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFS-------------QQY-----KATIGADFVTKELQMDDKLVTLQIWDTAG 70 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (210)
.+...+|+|+|+.|+|||||+++|+...-. ..+ ....++......+.. ....+.+|||||
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG 82 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW--DNHRINLIDTPG 82 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE--CCEEEEEEECCC
Confidence 346789999999999999999999853210 000 011112222222333 347899999999
Q ss_pred cccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
+.++...+..+++.+|++++|+|.++.........| ..+... ++|+++|+||+|+...
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~-------~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY-------GIPRLIFINKMDRVGA 140 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc-------CCCEEEEEECCCCCCC
Confidence 999988889999999999999999987665554333 333221 6799999999998754
No 253
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.70 E-value=6.3e-16 Score=114.64 Aligned_cols=168 Identities=18% Similarity=0.111 Sum_probs=113.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccc----ccccc---ccccC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERF----QSLGS---AFYRG 84 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~---~~~~~ 84 (210)
..-|.+||.|++|||||++.+......--..|.++..+.-..+.+++ .-.+.+-|.||..+= ..+-. ..+..
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 44578999999999999999998776544445555555555555532 245888899993321 11222 23556
Q ss_pred CcEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEe
Q 028305 85 ADCCVLVYDVNVQK---TFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 85 ~d~vi~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
+.++++|+|++..+ ..+.......++..+.... .+.|.++|+||+|+... .+...+....+.+..+....+.+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L--~~K~~ivv~NKiD~~~~--~e~~~~~~~~l~~~~~~~~~~~I 313 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKL--AEKPRIVVLNKIDLPLD--EEELEELKKALAEALGWEVFYLI 313 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHh--ccCceEEEEeccCCCcC--HHHHHHHHHHHHHhcCCCcceee
Confidence 88999999998654 3555555566666553322 26799999999996543 23333334444444342333339
Q ss_pred cCCCCCChHHHHHHHHHHHHhcc
Q 028305 162 SAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
|+.++.|++++...+.+.+.+..
T Consensus 314 Sa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 314 SALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ehhcccCHHHHHHHHHHHHHHhh
Confidence 99999999999999999988775
No 254
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.70 E-value=9.8e-17 Score=123.95 Aligned_cols=173 Identities=17% Similarity=0.107 Sum_probs=127.0
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc----ccc-----c
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ----SLG-----S 79 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~-----~ 79 (210)
.+....++|+|.|++|||||++.+.......++.++++...+..++.+ ....++++||||.-+.. ... .
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy--kYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY--KYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh--heeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 456788999999999999999999988887777777776666665554 44789999999932211 111 1
Q ss_pred ccccCCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCc
Q 028305 80 AFYRGADCCVLVYDVNVQK--TFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIP 157 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
...+--.+|+|+.|++... |.+.-...+..+..... +.|+|+|+||+|+...+......+++.+.....++++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-----NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~ 317 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-----NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVK 317 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-----CCceEEEeecccccCccccCHHHHHHHHHHHhccCce
Confidence 1122235899999999764 44444455666665544 7899999999999776555555555666666667799
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhcccccc
Q 028305 158 YFETSAKEDCNIDEAFLCVAEIALKNEHKDI 188 (210)
Q Consensus 158 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~ 188 (210)
++.+|+.+.+|+.++....+++++..+-.+.
T Consensus 318 v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~K 348 (620)
T KOG1490|consen 318 VVQTSCVQEEGVMDVRTTACEALLAARVEQK 348 (620)
T ss_pred EEEecccchhceeeHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877655433
No 255
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.69 E-value=6e-16 Score=101.42 Aligned_cols=106 Identities=24% Similarity=0.257 Sum_probs=68.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccc---------ccccccccc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERF---------QSLGSAFYR 83 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~ 83 (210)
+|+|+|.+|+|||||+|+|++.... ....+..+.......+.+++. .+.++||||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6999999999999999999975432 222233333344455566664 4579999994321 111233347
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEec
Q 028305 84 GADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130 (210)
Q Consensus 84 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K 130 (210)
.+|++++|+|.+++.. +.....+..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~--------~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK--------NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH--------TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh--------cCCCEEEEEcC
Confidence 8999999999877322 22233333442 17799999998
No 256
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=9.8e-16 Score=116.35 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=105.3
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCC-------------------------------CcccceeeeEEEEEEEEe
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFS-------------------------------QQYKATIGADFVTKELQM 56 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 56 (210)
..++.++++|+|+..+|||||+.+|+...-. .+...+. ++......+
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGv--Ti~~~~~~f 80 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGV--TIDVAHSKF 80 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcce--EEEEEEEEe
Confidence 3467899999999999999999998732211 1122233 333444445
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHH-----HHHHHHHHHHHhcCCCCCCCCCEEEEEecC
Q 028305 57 DDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFE-----SLQNWREEFLKQADPGEHEACPFVLLGNKI 131 (210)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~-----~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~ 131 (210)
....+.+.++|+||+.+|-......+.+||+.|+|+|+++.+.-. ...+-...+.+.+. --.+|+++||+
T Consensus 81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-----i~~lIVavNKM 155 (428)
T COG5256 81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-----IKQLIVAVNKM 155 (428)
T ss_pred ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-----CceEEEEEEcc
Confidence 555678999999999999998888899999999999999864211 11122223333332 22589999999
Q ss_pred CCCCCCC--cccchHHHHHHHHHcC----CCcEEEecCCCCCChHHH
Q 028305 132 DTDGGSS--RVVPQKKALEWCAYRG----NIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 132 D~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~ 172 (210)
|+.+-+. .+....++..+.+..+ .++|+++|+..|.|+.+-
T Consensus 156 D~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 156 DLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred cccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 9986421 1222233333444444 366999999999998743
No 257
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=1.7e-15 Score=116.55 Aligned_cols=166 Identities=16% Similarity=0.144 Sum_probs=121.6
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCC---------------CcccceeeeEEE--EEEEE-eCCeEEEEEEEeCC
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFS---------------QQYKATIGADFV--TKELQ-MDDKLVTLQIWDTA 69 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~~--~~~~~-~~~~~~~~~i~D~~ 69 (210)
+.....+..++-+-.-|||||..||+...-. -+...++++.-. ...+. -++..+.++++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 3455678889999999999999998733221 112223333222 22222 25678999999999
Q ss_pred CcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHH
Q 028305 70 GQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEW 149 (210)
Q Consensus 70 g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~ 149 (210)
||-+|.....+.+..|.++++++|++..-....+.+.|..+.. +.-++-|+||+|++..++..+ .+++...
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~--------~LeIiPViNKIDLP~Adperv-k~eIe~~ 155 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--------NLEIIPVLNKIDLPAADPERV-KQEIEDI 155 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc--------CcEEEEeeecccCCCCCHHHH-HHHHHHH
Confidence 9999999999999999999999999998777888888888764 557899999999987643222 2233322
Q ss_pred HHHcCCCcEEEecCCCCCChHHHHHHHHHHHHhc
Q 028305 150 CAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 183 (210)
.- ......+.+||++|.|++++++.+++++..=
T Consensus 156 iG-id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 156 IG-IDASDAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred hC-CCcchheeEecccCCCHHHHHHHHHhhCCCC
Confidence 21 2235689999999999999999999987643
No 258
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=5.3e-16 Score=112.04 Aligned_cols=168 Identities=14% Similarity=0.221 Sum_probs=112.3
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEE-EeCCeEEEEEEEeCCCccc-------cccccc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKEL-QMDDKLVTLQIWDTAGQER-------FQSLGS 79 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~-------~~~~~~ 79 (210)
....+++|+++|..|+|||||+|+|+.+...+...-+.+.+...... .+++ -.+.+||+||-++ +.....
T Consensus 35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred cccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHH
Confidence 35689999999999999999999999665543332222222322222 2333 3499999999443 666677
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC-----C--------cccchH--
Q 028305 80 AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGS-----S--------RVVPQK-- 144 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~-----~--------~~~~~~-- 144 (210)
.++...|.++++.+..++.--.. ..++..+..... +.++++++|.+|..... . ++...+
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~-----~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~ 186 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGL-----DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA 186 (296)
T ss_pred HHhhhccEEEEeccCCCccccCC-HHHHHHHHHhcc-----CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHH
Confidence 88889999999999998754333 334444443322 46999999999985431 0 111222
Q ss_pred -HHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 145 -KALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 145 -~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
.+.++++. -.+++..+.+.+-|++++...++..+.....
T Consensus 187 ~~~~~~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 187 EALGRLFQE--VKPVVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred HHHHHHHhh--cCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence 22333333 2468888889999999999999998875544
No 259
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.66 E-value=5.9e-15 Score=115.19 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=57.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEe---------------------C-CeEEEEEEEeCCC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQM---------------------D-DKLVTLQIWDTAG 70 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~g 70 (210)
++|+++|.||+|||||+|+|++........+..+++.......+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987665333344444444333221 1 2336799999999
Q ss_pred cc----ccccccccc---ccCCcEEEEEEECC
Q 028305 71 QE----RFQSLGSAF---YRGADCCVLVYDVN 95 (210)
Q Consensus 71 ~~----~~~~~~~~~---~~~~d~vi~v~d~~ 95 (210)
.. ....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 223333344 78999999999997
No 260
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.3e-15 Score=117.61 Aligned_cols=172 Identities=19% Similarity=0.135 Sum_probs=113.2
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc-ccccc--------c
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER-FQSLG--------S 79 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~--------~ 79 (210)
+..++|+++|+||+|||||+|.|...... ..+.++++.|-....+.++| +++.+.||+|-.+ -.... .
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence 45699999999999999999999977654 56778888888888888877 6688889999544 11111 2
Q ss_pred ccccCCcEEEEEEECC--ChhhHHHHHHHHHHHHHhc--CCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHH--Hc
Q 028305 80 AFYRGADCCVLVYDVN--VQKTFESLQNWREEFLKQA--DPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCA--YR 153 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~--~~~s~~~~~~~~~~l~~~~--~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~--~~ 153 (210)
.-+..+|++++|+|+. +-.+-..+...+....... ..+...+.|++++.||.|+...-. ........+.. -.
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~--~~~~~~~~~~~~~~~ 421 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP--EMTKIPVVYPSAEGR 421 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccc--cccCCceeccccccC
Confidence 2357899999999993 3333233333333332211 111113469999999999976410 00110111111 11
Q ss_pred CCCc-EEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 154 GNIP-YFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 154 ~~~~-~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
+..+ ..++|+.+++|++.+.+.+.........
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 2234 4559999999999999999988877655
No 261
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.65 E-value=2.9e-15 Score=125.28 Aligned_cols=147 Identities=15% Similarity=0.095 Sum_probs=94.3
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCC------------------CcccceeeeEEEEEEEEeCCeEEEEEEEeCCC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFS------------------QQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (210)
.+...+|+++|++++|||||+++|+...-. .+...+++++.....+...+ ..+.+|||||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCC
Confidence 445779999999999999999999732211 01122334444444444444 6799999999
Q ss_pred cccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHH
Q 028305 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWC 150 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~ 150 (210)
+.++.......++.+|++++|+|..+....... .++..+... ++|+++++||+|+.... .....+.+....
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~-------~~p~ivviNK~D~~~~~-~~~~~~~i~~~l 155 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY-------EVPRIAFVNKMDKTGAN-FLRVVNQIKQRL 155 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc-------CCCEEEEEECCCCCCCC-HHHHHHHHHHHh
Confidence 998887888889999999999999876444332 222333221 67999999999997642 222223333222
Q ss_pred HHcCCCcEEEecCCCC
Q 028305 151 AYRGNIPYFETSAKED 166 (210)
Q Consensus 151 ~~~~~~~~~~~Sa~~~ 166 (210)
........+++|+..+
T Consensus 156 ~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 156 GANAVPIQLPIGAEDN 171 (689)
T ss_pred CCCceeEEeccccCCC
Confidence 2111122566666555
No 262
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=4.6e-16 Score=103.48 Aligned_cols=158 Identities=20% Similarity=0.319 Sum_probs=112.5
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
.+.-|++++|-.|+|||||++.|.++... +..||.- ++.....+. +.+++.+|.+|+..-+..+..++..+|+++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlH--PTSE~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccccc-ccCCCcC--CChHHheec--CceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 34568999999999999999999877655 3333332 222233343 378999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHH---HHcC------------
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWC---AYRG------------ 154 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~---~~~~------------ 154 (210)
+.+|+.+.+.+.+...-+..+..... ..++|+++.+||+|...+. .+++.+-.. +..+
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~---la~vp~lilgnKId~p~a~----se~~l~~~l~l~~~t~~~~~v~~~~~~~ 165 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDES---LATVPFLILGNKIDIPYAA----SEDELRFHLGLSNFTTGKGKVNLTDSNV 165 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHH---HhcCcceeecccccCCCcc----cHHHHHHHHHHHHHhcccccccccCCCC
Confidence 99999999988887665555543321 1278999999999998653 222222111 1111
Q ss_pred -CCcEEEecCCCCCChHHHHHHHHHH
Q 028305 155 -NIPYFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 155 -~~~~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
.+.++.+|...+.+.-+.|.|+.+.
T Consensus 166 rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 166 RPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CeEEEEEEEEEccCccceeeeehhhh
Confidence 2347788888888888888887654
No 263
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.64 E-value=7e-16 Score=106.94 Aligned_cols=120 Identities=23% Similarity=0.271 Sum_probs=72.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEe-CCeEEEEEEEeCCCccccccccccc---ccCCcE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQM-DDKLVTLQIWDTAGQERFQSLGSAF---YRGADC 87 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~---~~~~d~ 87 (210)
.-.|+++|+.|||||+|..+|..+......... . ... ...+ ......+.++|+|||.+.+...... ...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e--~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-E--NNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-S--EEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-c--CCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 346899999999999999999988554322111 1 111 1111 2233468899999999987755544 788999
Q ss_pred EEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 88 CVLVYDVNV-QKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 88 vi~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
+|||+|.+. +..+.....++..+....... ...+|++|+.||.|+..+
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT-
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCcccccc
Confidence 999999974 344555554444444332211 237899999999999765
No 264
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.64 E-value=4.1e-15 Score=120.07 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=81.6
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCc--CC--Cc----------------ccceeeeEEEEEEEEeCCeEEEEEEEeC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNK--FS--QQ----------------YKATIGADFVTKELQMDDKLVTLQIWDT 68 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 68 (210)
.....+|+++|++++|||||+++|+... .. .. .....++.+......++.....+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 4567899999999999999999986311 10 00 0011123333333444445688999999
Q ss_pred CCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 69 AGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
||+.++.......++.+|++|+|+|..+... .....++..... .++|+++++||+|+...
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~-------~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL-------RDTPIFTFMNKLDRDIR 147 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh-------cCCCEEEEEECccccCC
Confidence 9999888877788899999999999987422 122333333322 16799999999998653
No 265
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.64 E-value=2.2e-14 Score=102.64 Aligned_cols=166 Identities=15% Similarity=0.110 Sum_probs=99.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcc--cceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc-------cc----c
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQY--KATIGADFVTKELQMDDKLVTLQIWDTAGQERFQS-------LG----S 79 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~----~ 79 (210)
++|+++|.+|+|||||+|++++....... .+..+...........+ ..+.++||||..+... .. .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999977543222 22333333333344444 4689999999544321 11 1
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCccc----chHHHHHHHHHcCC
Q 028305 80 AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVV----PQKKALEWCAYRGN 155 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~----~~~~~~~~~~~~~~ 155 (210)
.....+|++++|+++.+. +.+. ...+..+........ -.++++|.|++|.......+. .....+.+.+..+
T Consensus 79 ~~~~g~~~illVi~~~~~-t~~d-~~~l~~l~~~fg~~~--~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~- 153 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRF-TEEE-EQAVETLQELFGEKV--LDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG- 153 (196)
T ss_pred hcCCCCEEEEEEEECCCc-CHHH-HHHHHHHHHHhChHh--HhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC-
Confidence 123568999999998862 2221 233334433322110 237899999999765321111 1244555555544
Q ss_pred CcEEEec-----CCCCCChHHHHHHHHHHHHhccc
Q 028305 156 IPYFETS-----AKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 156 ~~~~~~S-----a~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
..++..+ +..+.++.++++.+.+.+..+..
T Consensus 154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~ 188 (196)
T cd01852 154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKENGG 188 (196)
T ss_pred CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 3343333 45688999999999888877433
No 266
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.63 E-value=1.5e-14 Score=106.58 Aligned_cols=171 Identities=22% Similarity=0.281 Sum_probs=125.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEE--eCCeEEEEEEEeCCCcccccccccccccCC---
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQ--MDDKLVTLQIWDTAGQERFQSLGSAFYRGA--- 85 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~--- 85 (210)
.-=+|+|+|..++|||||+.+|-+.. .+.++.+..+.+..++ .++...++.+|-..|..-+..+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 45579999999999999999998655 3344444445444443 344457889999988776666665554432
Q ss_pred -cEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCC-------------------------------------------
Q 028305 86 -DCCVLVYDVNVQ-KTFESLQNWREEFLKQADPGEHE------------------------------------------- 120 (210)
Q Consensus 86 -d~vi~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~~~------------------------------------------- 120 (210)
-.||++.|+++| ..++.+.+|...+..+.......
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 388999999999 45667778877763332222221
Q ss_pred --------------CCCEEEEEecCCCCCC---------CCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHH
Q 028305 121 --------------ACPFVLLGNKIDTDGG---------SSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177 (210)
Q Consensus 121 --------------~~p~ilv~~K~D~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 177 (210)
++|+++|.+|+|...- +.+.....-++.|+.+++ ...+.+|+++..|++-++..|.
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-ceeEEeecccccchHHHHHHHH
Confidence 6899999999998321 224567778899999999 8999999999999999999999
Q ss_pred HHHHhccc
Q 028305 178 EIALKNEH 185 (210)
Q Consensus 178 ~~~~~~~~ 185 (210)
++.+-..=
T Consensus 287 hr~yG~~f 294 (473)
T KOG3905|consen 287 HRSYGFPF 294 (473)
T ss_pred HHhcCccc
Confidence 99876644
No 267
>PRK12739 elongation factor G; Reviewed
Probab=99.61 E-value=9.9e-15 Score=122.08 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=83.2
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCC------------------CcccceeeeEEEEEEEEeCCeEEEEEEEeCCC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFS------------------QQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (210)
.....+|+++|++++|||||+++|+...-. .+...+++++.....+..++ .++.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence 346789999999999999999999742110 01123344444444444544 6789999999
Q ss_pred cccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
+.++.......++.+|++++|+|.......... ..+..+... ++|+++++||+|+...
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~~-------~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADKY-------GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHc-------CCCEEEEEECCCCCCC
Confidence 988888888889999999999999875433322 222333221 6799999999999864
No 268
>PRK09866 hypothetical protein; Provisional
Probab=99.60 E-value=5.4e-14 Score=113.11 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=70.8
Q ss_pred EEEEEeCCCccc-----ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 62 TLQIWDTAGQER-----FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 62 ~~~i~D~~g~~~-----~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
.+.++||||... +.......+..+|++++|+|.....+... ......+.+... +.|+++|+||+|+...
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K-----~~PVILVVNKIDl~dr 304 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQ-----SVPLYVLVNKFDQQDR 304 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCC-----CCCEEEEEEcccCCCc
Confidence 578999999543 22234456889999999999987433332 122333332211 2599999999998532
Q ss_pred CCcccchHHHHHHHH----H--cCCCcEEEecCCCCCChHHHHHHHHH
Q 028305 137 SSRVVPQKKALEWCA----Y--RGNIPYFETSAKEDCNIDEAFLCVAE 178 (210)
Q Consensus 137 ~~~~~~~~~~~~~~~----~--~~~~~~~~~Sa~~~~~v~~~~~~l~~ 178 (210)
. ....+.+..+.. . .....++++||+.|.|++++++.|..
T Consensus 305 e--eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 305 N--SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred c--cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 1 111333333322 1 12346999999999999999998887
No 269
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.59 E-value=5.2e-15 Score=94.00 Aligned_cols=138 Identities=24% Similarity=0.285 Sum_probs=98.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCC----cccccccccccccCCcEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG----QERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----~~~~~~~~~~~~~~~d~vi 89 (210)
|++++|..|+|||||.++|.+.... +..+..+.+ ... -.+|||| +..+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~-------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEF-------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccceeec-------cCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7899999999999999999876543 222222222 111 1459999 3344444455567899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
+|-.++++.+--.. .+.... ..|+|=|++|.|+.+. ...+..+.+....|.-++|++|+.++.|+
T Consensus 70 ~v~~and~~s~f~p-~f~~~~----------~k~vIgvVTK~DLaed----~dI~~~~~~L~eaGa~~IF~~s~~d~~gv 134 (148)
T COG4917 70 YVHAANDPESRFPP-GFLDIG----------VKKVIGVVTKADLAED----ADISLVKRWLREAGAEPIFETSAVDNQGV 134 (148)
T ss_pred eeecccCccccCCc-cccccc----------ccceEEEEecccccch----HhHHHHHHHHHHcCCcceEEEeccCcccH
Confidence 99999987542211 111111 4579999999999853 45677788888889899999999999999
Q ss_pred HHHHHHHHHH
Q 028305 170 DEAFLCVAEI 179 (210)
Q Consensus 170 ~~~~~~l~~~ 179 (210)
+++++.|...
T Consensus 135 ~~l~~~L~~~ 144 (148)
T COG4917 135 EELVDYLASL 144 (148)
T ss_pred HHHHHHHHhh
Confidence 9999988653
No 270
>PRK12740 elongation factor G; Reviewed
Probab=99.59 E-value=3.4e-14 Score=118.92 Aligned_cols=109 Identities=21% Similarity=0.263 Sum_probs=75.3
Q ss_pred EcCCCCcHHHHHHHHhhCcCC------------------CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q 028305 18 LGDSGVGKTSLMNQYVYNKFS------------------QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGS 79 (210)
Q Consensus 18 ~G~~~~GKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (210)
+|++++|||||+++|+...-. .+...+.++......+... .+.+.+|||||+.++...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence 699999999999999633211 0011223333333344443 47899999999988877788
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 80 AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
..+..+|++++|+|.+..........| ..+... ++|+++|+||+|+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~~-------~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEKY-------GVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHHc-------CCCEEEEEECCCCCCC
Confidence 889999999999999886655443333 233221 6799999999998643
No 271
>PRK00007 elongation factor G; Reviewed
Probab=99.58 E-value=1.8e-14 Score=120.48 Aligned_cols=147 Identities=17% Similarity=0.110 Sum_probs=93.5
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcC--C----------------CcccceeeeEEEEEEEEeCCeEEEEEEEeCCC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKF--S----------------QQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (210)
.+...+|+++|.+++|||||+++|+...- . .+...+.+++.....+...+ ..+.++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence 45678999999999999999999973111 0 01223344444444444444 6789999999
Q ss_pred cccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHH
Q 028305 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWC 150 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~ 150 (210)
+.++.......++.+|++++|+|............ +..+... ++|.++++||+|+..... ....++++...
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~-~~~~~~~-------~~p~iv~vNK~D~~~~~~-~~~~~~i~~~l 155 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETV-WRQADKY-------KVPRIAFVNKMDRTGADF-YRVVEQIKDRL 155 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHH-HHHHHHc-------CCCEEEEEECCCCCCCCH-HHHHHHHHHHh
Confidence 98887777778889999999999876543333222 2233222 679999999999986431 12222332222
Q ss_pred HHcCCCcEEEecCCCC
Q 028305 151 AYRGNIPYFETSAKED 166 (210)
Q Consensus 151 ~~~~~~~~~~~Sa~~~ 166 (210)
........+++|+..+
T Consensus 156 ~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 156 GANPVPIQLPIGAEDD 171 (693)
T ss_pred CCCeeeEEecCccCCc
Confidence 2211234566777665
No 272
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.58 E-value=5.4e-14 Score=120.10 Aligned_cols=148 Identities=27% Similarity=0.288 Sum_probs=98.9
Q ss_pred cHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeE----------------EEEEEEeCCCcccccccccccccCCcE
Q 028305 24 GKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKL----------------VTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 24 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
+||||+.++.+.........+++....-..+..+... -.+.+|||||++.+..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999888776666666555544444333110 128999999999998887777888999
Q ss_pred EEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC------c--------ccchHHHH---
Q 028305 88 CVLVYDVNV---QKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS------R--------VVPQKKAL--- 147 (210)
Q Consensus 88 vi~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~------~--------~~~~~~~~--- 147 (210)
+++|+|+++ +.+++.+. .+... ++|+++|+||+|+..... + +....+..
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~~-------~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l 621 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQY-------KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKL 621 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHHc-------CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHH
Confidence 999999987 34444332 22211 679999999999964210 0 00011110
Q ss_pred -H----HH-------------HHcCCCcEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 148 -E----WC-------------AYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 148 -~----~~-------------~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
. +. ...+.++++++||++|+|+++++..|......
T Consensus 622 ~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~ 674 (1049)
T PRK14845 622 YELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK 674 (1049)
T ss_pred HHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence 0 11 11235789999999999999999988765543
No 273
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.57 E-value=7.7e-14 Score=103.99 Aligned_cols=154 Identities=20% Similarity=0.215 Sum_probs=110.0
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCC---------------------------------CcccceeeeEEEEEEE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFS---------------------------------QQYKATIGADFVTKEL 54 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~ 54 (210)
.....++++-+|...-||||||.||+.+.-. .+...+++++..+..+
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 3467899999999999999999998743322 2234456667666666
Q ss_pred EeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCC
Q 028305 55 QMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTD 134 (210)
Q Consensus 55 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~ 134 (210)
..+. .++++-|||||+.|...+-.....||++|+++|....- .+. .+-...+...+. -..+++.+||+||.
T Consensus 82 sT~K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~Q-TrRHs~I~sLLG-----IrhvvvAVNKmDLv 152 (431)
T COG2895 82 STEK--RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQ-TRRHSFIASLLG-----IRHVVVAVNKMDLV 152 (431)
T ss_pred cccc--ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHH-hHHHHHHHHHhC-----CcEEEEEEeeeccc
Confidence 6544 56999999999999888888888999999999996432 111 111222222221 22588999999998
Q ss_pred CCCC--cccchHHHHHHHHHcCC--CcEEEecCCCCCChH
Q 028305 135 GGSS--RVVPQKKALEWCAYRGN--IPYFETSAKEDCNID 170 (210)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~ 170 (210)
+... +....++...|+...+. ..++++||..|+|+-
T Consensus 153 dy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 153 DYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 7642 34555666778888773 459999999999986
No 274
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.57 E-value=1.7e-13 Score=108.05 Aligned_cols=168 Identities=20% Similarity=0.321 Sum_probs=122.6
Q ss_pred ccccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccC
Q 028305 5 VNMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84 (210)
Q Consensus 5 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (210)
........+++.|+|+.++|||.|+++|+++.+...+..+....+....+...+....+.+.|.+-. ...-+...- ..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence 3445568999999999999999999999998888766566666666666666677777888877653 222222222 67
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCC
Q 028305 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK 164 (210)
Q Consensus 85 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (210)
+|+++++||.+++.+|+.+...+..-... ...|+++|++|+|+.+...+ ..... .+++++.+.-+.+.+|.+
T Consensus 496 cDv~~~~YDsS~p~sf~~~a~v~~~~~~~------~~~Pc~~va~K~dlDe~~Q~-~~iqp-de~~~~~~i~~P~~~S~~ 567 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRSFEYLAEVYNKYFDL------YKIPCLMVATKADLDEVPQR-YSIQP-DEFCRQLGLPPPIHISSK 567 (625)
T ss_pred eeeEEEecccCCchHHHHHHHHHHHhhhc------cCCceEEEeeccccchhhhc-cCCCh-HHHHHhcCCCCCeeeccC
Confidence 99999999999999999876654443222 27899999999999875322 22223 788888887777888887
Q ss_pred CCCChHHHHHHHHHHHHhc
Q 028305 165 EDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 165 ~~~~v~~~~~~l~~~~~~~ 183 (210)
+ .+=.++|..|+.++.-=
T Consensus 568 ~-~~s~~lf~kL~~~A~~P 585 (625)
T KOG1707|consen 568 T-LSSNELFIKLATMAQYP 585 (625)
T ss_pred C-CCCchHHHHHHHhhhCC
Confidence 5 22289999999887543
No 275
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.57 E-value=1.9e-13 Score=108.32 Aligned_cols=174 Identities=22% Similarity=0.301 Sum_probs=121.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC--CeEEEEEEEeCCCcccccccccccccCC--
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD--DKLVTLQIWDTAGQERFQSLGSAFYRGA-- 85 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~-- 85 (210)
...-.|+|+|..++|||||+.+|.+.. .+.++.+.+|.+..+.-+ .....+.+|-..|...+..+....+...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 455789999999999999999987543 334555555555544322 2345789999988666666665555432
Q ss_pred --cEEEEEEECCChhhH-HHHHHHHHHHHHhcCCC---------------------------------------------
Q 028305 86 --DCCVLVYDVNVQKTF-ESLQNWREEFLKQADPG--------------------------------------------- 117 (210)
Q Consensus 86 --d~vi~v~d~~~~~s~-~~~~~~~~~l~~~~~~~--------------------------------------------- 117 (210)
-.||+|.|.+.|..+ +.+..|...+..+....
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 388999999998554 45566655551111000
Q ss_pred -------------CCCCCCEEEEEecCCCCCC---------CCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHH
Q 028305 118 -------------EHEACPFVLLGNKIDTDGG---------SSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLC 175 (210)
Q Consensus 118 -------------~~~~~p~ilv~~K~D~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 175 (210)
...++|++||.+|+|.... +..+....-++.++..+| ..++.+|.+...+++-++..
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-AsL~yts~~~~~n~~~L~~y 258 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-ASLIYTSVKEEKNLDLLYKY 258 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-CeEEEeeccccccHHHHHHH
Confidence 0015899999999997321 123456667888999998 88999999999999999999
Q ss_pred HHHHHHhccccc
Q 028305 176 VAEIALKNEHKD 187 (210)
Q Consensus 176 l~~~~~~~~~~~ 187 (210)
|..+++...-+.
T Consensus 259 i~h~l~~~~f~~ 270 (472)
T PF05783_consen 259 ILHRLYGFPFKT 270 (472)
T ss_pred HHHHhccCCCCC
Confidence 999988776543
No 276
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.56 E-value=2.8e-14 Score=119.77 Aligned_cols=118 Identities=20% Similarity=0.183 Sum_probs=80.5
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhC---------------cCCCc---ccceeeeEEEEEEEEeCCeEEEEEEEeCCCc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYN---------------KFSQQ---YKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (210)
....+|+++|+.++|||||+++|+.. .+... +..+............++..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45789999999999999999999742 11110 1112222222222335566788999999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCC
Q 028305 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDG 135 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~ 135 (210)
.++.......++.+|++++|+|............| ..+... ++|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~~-------~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALKE-------NVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHHc-------CCCEEEEEEChhccc
Confidence 99888888889999999999999874322222222 222211 668899999999864
No 277
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=3.9e-13 Score=93.55 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=104.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccccccccc---CCcE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYR---GADC 87 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~ 87 (210)
..-.|+++|+.+||||+|.-.|+.+...... +.+......+.+.+.. +.++|.|||.+.+.....++. .+-+
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~aka 111 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKA 111 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHcccccccee
Confidence 3457999999999999999999987544322 2233334444444433 788899999998877777766 6889
Q ss_pred EEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcc----cchHHHHHH-------------
Q 028305 88 CVLVYDVNV-QKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRV----VPQKKALEW------------- 149 (210)
Q Consensus 88 vi~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~----~~~~~~~~~------------- 149 (210)
+++|+|..- +........++..+...... ....+|++++.||.|+.-+...+ ..+.|+..+
T Consensus 112 iVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~e 190 (238)
T KOG0090|consen 112 IVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDE 190 (238)
T ss_pred EEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 999999754 23344444444444333211 22278999999999986543211 111111111
Q ss_pred -----------------HHHc-CCCcEEEecCCCCCChHHHHHHHHHH
Q 028305 150 -----------------CAYR-GNIPYFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 150 -----------------~~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
.+-. ..+.+.++|++++ +++++-+|+.+.
T Consensus 191 d~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 191 DIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1111 1355888999988 899999998875
No 278
>PRK13768 GTPase; Provisional
Probab=99.51 E-value=2.2e-13 Score=100.80 Aligned_cols=116 Identities=20% Similarity=0.135 Sum_probs=70.7
Q ss_pred EEEEEeCCCccccc---cccccc---ccC--CcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCCEEEEEecCC
Q 028305 62 TLQIWDTAGQERFQ---SLGSAF---YRG--ADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKID 132 (210)
Q Consensus 62 ~~~i~D~~g~~~~~---~~~~~~---~~~--~d~vi~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~~~p~ilv~~K~D 132 (210)
.+.+||+||+.+.. .....+ +.. ++++++++|.......... ..++..+...... ++|+++|+||+|
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~----~~~~i~v~nK~D 173 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRL----GLPQIPVLNKAD 173 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEhHh
Confidence 58999999976632 222222 222 7999999999764332222 2222221111111 679999999999
Q ss_pred CCCCCCcccchHHHH------------------------HHHHHcC-CCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 133 TDGGSSRVVPQKKAL------------------------EWCAYRG-NIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~------------------------~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
+.+............ ...+..+ ..+++++|++++.|+++++++|.+.+.
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 174 LLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 976532222111111 1122223 357999999999999999999988764
No 279
>PTZ00258 GTP-binding protein; Provisional
Probab=99.51 E-value=4.5e-13 Score=103.73 Aligned_cols=86 Identities=22% Similarity=0.186 Sum_probs=61.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCe---------------EEEEEEEeCCCccc-
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDK---------------LVTLQIWDTAGQER- 73 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~- 73 (210)
...++|+++|.||+|||||+|+|.+........|.++.+.....+.+.+. ..++.++|+||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 56789999999999999999999877665545566666666666554432 23589999999432
Q ss_pred ------ccccccccccCCcEEEEEEECC
Q 028305 74 ------FQSLGSAFYRGADCCVLVYDVN 95 (210)
Q Consensus 74 ------~~~~~~~~~~~~d~vi~v~d~~ 95 (210)
........++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112233467899999999973
No 280
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.50 E-value=1e-12 Score=93.76 Aligned_cols=103 Identities=20% Similarity=0.232 Sum_probs=62.1
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC--CC
Q 028305 61 VTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG--SS 138 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~--~~ 138 (210)
....++++.|..-...... .-+|.+|.|+|+.+.++... .....+ ...-++++||+|+.+. ..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi----------~~ad~~~~~k~d~~~~~~~~ 156 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI----------TRSDLLVINKIDLAPMVGAD 156 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh----------hhccEEEEEhhhcccccccc
Confidence 3456667777321111111 12578999999987554221 111111 2234899999999743 11
Q ss_pred cccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 139 RVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
.....++++.+ .+..+++++|+++|.|++++|+++.+.+.
T Consensus 157 ~~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 157 LGVMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 12222333333 44588999999999999999999987653
No 281
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.50 E-value=1.2e-13 Score=99.69 Aligned_cols=172 Identities=19% Similarity=0.178 Sum_probs=98.9
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccce-eeeEEE------EEEEEe------------------------
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKAT-IGADFV------TKELQM------------------------ 56 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~------~~~~~~------------------------ 56 (210)
..+.+.-|+|+|-.|||||||++||..........|- +..++. ...+.+
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 3456888999999999999999999744332211110 000000 000000
Q ss_pred -----------------CCeEEEEEEEeCCCcccccc------cccccccC--CcEEEEEEECCC---hhhHHHHHHHHH
Q 028305 57 -----------------DDKLVTLQIWDTAGQERFQS------LGSAFYRG--ADCCVLVYDVNV---QKTFESLQNWRE 108 (210)
Q Consensus 57 -----------------~~~~~~~~i~D~~g~~~~~~------~~~~~~~~--~d~vi~v~d~~~---~~s~~~~~~~~~ 108 (210)
......+.++|||||.+... +....+.. .-+++|++|... |.+|. .+.+.
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFM--SNMlY 172 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFM--SNMLY 172 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHH--HHHHH
Confidence 11124688999999765221 11112222 347777777643 33333 22222
Q ss_pred HHHHhcCCCCCCCCCEEEEEecCCCCCCCC-------cccchHHH----------------HHHHHHcCCCcEEEecCCC
Q 028305 109 EFLKQADPGEHEACPFVLLGNKIDTDGGSS-------RVVPQKKA----------------LEWCAYRGNIPYFETSAKE 165 (210)
Q Consensus 109 ~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~-------~~~~~~~~----------------~~~~~~~~~~~~~~~Sa~~ 165 (210)
...-.... ..|+|+|.||+|+..... .+...+.+ ..+-..+..+..+-+|+.+
T Consensus 173 AcSilykt----klp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~t 248 (366)
T KOG1532|consen 173 ACSILYKT----KLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVT 248 (366)
T ss_pred HHHHHHhc----cCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEeccc
Confidence 22222222 789999999999976531 11111111 1222334457799999999
Q ss_pred CCChHHHHHHHHHHHHhccc
Q 028305 166 DCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~~~ 185 (210)
|.|.+++|..+.+.+-++..
T Consensus 249 G~G~ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 249 GEGFDDFFTAVDESVDEYEE 268 (366)
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 99999999999988876655
No 282
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.49 E-value=4.8e-13 Score=103.10 Aligned_cols=161 Identities=17% Similarity=0.217 Sum_probs=108.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCc--CCC------------cccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNK--FSQ------------QYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQS 76 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (210)
...+|+++-+..-|||||+..|+... |.. ......++.+..+...+....+.++++|||||.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 45689999999999999999998443 321 1112223344444444444558899999999999999
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcC--
Q 028305 77 LGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRG-- 154 (210)
Q Consensus 77 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~-- 154 (210)
..+..++.+|++++++|+....- .+..-.+.+.+.. +.+-|+|+||+|...+.+..+..+-...|. ..+
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpM----PQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~-~L~A~ 154 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPM----PQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFV-ELGAT 154 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCC----CchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHH-HhCCC
Confidence 99999999999999999987422 1222222222222 667788999999988765555444444443 232
Q ss_pred ----CCcEEEecCCCCC----------ChHHHHHHHHHHH
Q 028305 155 ----NIPYFETSAKEDC----------NIDEAFLCVAEIA 180 (210)
Q Consensus 155 ----~~~~~~~Sa~~~~----------~v~~~~~~l~~~~ 180 (210)
..+++..|++.|. ++.-+|+.|++.+
T Consensus 155 deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 155 DEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred hhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 4789999998663 4455555555543
No 283
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.49 E-value=1.7e-14 Score=105.43 Aligned_cols=115 Identities=15% Similarity=0.101 Sum_probs=60.9
Q ss_pred EEEEEeCCCcccccccccccc--------cCCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCC
Q 028305 62 TLQIWDTAGQERFQSLGSAFY--------RGADCCVLVYDVNVQKT-FESLQNWREEFLKQADPGEHEACPFVLLGNKID 132 (210)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~vi~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D 132 (210)
.+.++|||||.++...+.... ...-++++++|.....+ ...+..++..+...... +.|.|.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~----~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL----ELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH----TSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC----CCCEEEeeeccC
Confidence 589999999988665554332 33458888998764322 11222222222211111 789999999999
Q ss_pred CCCCCC--------------------cccchHHHHHHHHHcCCC-cEEEecCCCCCChHHHHHHHHHHH
Q 028305 133 TDGGSS--------------------RVVPQKKALEWCAYRGNI-PYFETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 133 ~~~~~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
+.+... .....+.+..+....+.. .++++|+.+++++.+++..+-+++
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 976210 011122233333334445 799999999999999999887764
No 284
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.49 E-value=1.1e-12 Score=99.78 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=70.8
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCc
Q 028305 60 LVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSR 139 (210)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~ 139 (210)
.+.+.++||+|...-. ......+|.++++.+....+....+. ..+. .+..++|+||+|+......
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~---------E~aDIiVVNKaDl~~~~~a 212 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIM---------ELADLIVINKADGDNKTAA 212 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhh---------hhhheEEeehhcccchhHH
Confidence 3578999999965222 22466799999997644333332222 1121 2245899999998764323
Q ss_pred ccchHHHHHHHHHc------CCCcEEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 140 VVPQKKALEWCAYR------GNIPYFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 140 ~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
.....++....... ...+++.+|+.++.|++++++.+.+.+.....
T Consensus 213 ~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~ 264 (332)
T PRK09435 213 RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTA 264 (332)
T ss_pred HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 33334444443321 22579999999999999999999998764444
No 285
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.48 E-value=2e-12 Score=95.18 Aligned_cols=125 Identities=15% Similarity=0.112 Sum_probs=74.1
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCc-ccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc--c-c------
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQ-YKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ--S-L------ 77 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-~------ 77 (210)
.....++|+|+|.+|+|||||+|+|++...... .....+..........++ ..+.+|||||..+.. . .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 456789999999999999999999998764322 111222333333333444 568999999965431 0 1
Q ss_pred -cccccc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 78 -GSAFYR--GADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 78 -~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
...++. ..|++++|..++....-..-...++.+.......- -.++++|.||+|....
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~p 164 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--WRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--HhCEEEEEeCCccCCC
Confidence 112232 46888888777653211111233334433222111 2379999999998543
No 286
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=3.7e-13 Score=106.20 Aligned_cols=165 Identities=20% Similarity=0.230 Sum_probs=110.6
Q ss_pred ccccccccceEEEEEEcCCCCcHHHHHHHHhhCcC--C---------------------------CcccceeeeEEEEEE
Q 028305 3 ISVNMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKF--S---------------------------QQYKATIGADFVTKE 53 (210)
Q Consensus 3 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~ 53 (210)
+..+......++++|+|+..+|||||+.+++..-- . .......++....+.
T Consensus 168 ~~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~ 247 (603)
T KOG0458|consen 168 IDEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKT 247 (603)
T ss_pred cccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeee
Confidence 34445566889999999999999999998762211 1 011112234445555
Q ss_pred EEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hHHHHH--HHHHHHHHhcCCCCCCCCCEEEEE
Q 028305 54 LQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQK---TFESLQ--NWREEFLKQADPGEHEACPFVLLG 128 (210)
Q Consensus 54 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~~~~--~~~~~l~~~~~~~~~~~~p~ilv~ 128 (210)
..++.....++++|+||+.+|..........+|+.++|+|++-.. .|+... +-...+.+.+. -.-++|++
T Consensus 248 ~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-----i~qlivai 322 (603)
T KOG0458|consen 248 TWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-----ISQLIVAI 322 (603)
T ss_pred EEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-----cceEEEEe
Confidence 566666778999999999999998888899999999999998532 222111 12223333332 22589999
Q ss_pred ecCCCCCCC--CcccchHHHHHHH-HHcC----CCcEEEecCCCCCChHHH
Q 028305 129 NKIDTDGGS--SRVVPQKKALEWC-AYRG----NIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 129 ~K~D~~~~~--~~~~~~~~~~~~~-~~~~----~~~~~~~Sa~~~~~v~~~ 172 (210)
||+|+.+-. .++.....+..|+ +..+ .+.++++|+..|+|+...
T Consensus 323 NKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 323 NKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 999997642 2344455555666 3333 467999999999998744
No 287
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.46 E-value=6.3e-13 Score=111.95 Aligned_cols=118 Identities=18% Similarity=0.159 Sum_probs=78.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC--Cc--------------ccceeeeEEE--EEEEEeCCeEEEEEEEeCCCc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS--QQ--------------YKATIGADFV--TKELQMDDKLVTLQIWDTAGQ 71 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~--------------~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~ 71 (210)
+...+|+++|+.++|||||+.+|+...-. .. ...+.++... ...+..++....+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 45678999999999999999999743211 00 0001111111 112233445678999999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCC
Q 028305 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDG 135 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~ 135 (210)
.+|.......++.+|++|+|+|............|. ..... ++|.++++||+|+..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~-------~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE-------RVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc-------CCCeEEEEECchhhc
Confidence 999888888899999999999988653333222232 22221 557899999999864
No 288
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.46 E-value=2.7e-12 Score=95.99 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=72.4
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCc-ccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc-------c
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQ-YKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG-------S 79 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~ 79 (210)
.+...++|+++|.+|+||||++|+|++...... .....+..........++ ..+.++||||..+..... .
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHH
Confidence 346789999999999999999999997754211 111112222222233344 679999999955432111 1
Q ss_pred ccc--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCC
Q 028305 80 AFY--RGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDG 135 (210)
Q Consensus 80 ~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~ 135 (210)
.++ ...|+++||..++.......-...+..+.......- -.++|+|.|+.|...
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i--w~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI--WRKSLVVLTHAQFSP 167 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh--hccEEEEEECCccCC
Confidence 111 258999999766543211111233344443322111 237999999999753
No 289
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.45 E-value=2e-12 Score=94.21 Aligned_cols=145 Identities=18% Similarity=0.138 Sum_probs=85.0
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
...+..|+++|++|+|||||++.+.............+. +. .... ....+.++||||.. ......++.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~--i~~~--~~~~i~~vDtPg~~---~~~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-IT--VVTG--KKRRLTFIECPNDI---NAMIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EE--EEec--CCceEEEEeCCchH---HHHHHHHHhcCEE
Confidence 356788999999999999999999864221111111110 11 1111 34568899999854 2223346789999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCE-EEEEecCCCCCCCC-cccchHHHHH-HH-HHcCCCcEEEecCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPF-VLLGNKIDTDGGSS-RVVPQKKALE-WC-AYRGNIPYFETSAK 164 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~-ilv~~K~D~~~~~~-~~~~~~~~~~-~~-~~~~~~~~~~~Sa~ 164 (210)
++++|.+....... ...+..+... +.|. ++|+||+|+.+... .....+.++. +. ......+++.+||+
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~~-------g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~ 179 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQVH-------GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGI 179 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHHc-------CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeec
Confidence 99999976443222 2233333221 4574 55999999864321 1222233333 22 12345789999998
Q ss_pred CCCCh
Q 028305 165 EDCNI 169 (210)
Q Consensus 165 ~~~~v 169 (210)
+...+
T Consensus 180 ~~~~~ 184 (225)
T cd01882 180 VHGRY 184 (225)
T ss_pred cCCCC
Confidence 86443
No 290
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.45 E-value=1.5e-12 Score=97.37 Aligned_cols=141 Identities=18% Similarity=0.164 Sum_probs=84.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCc----------ccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc---
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQ----------YKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL--- 77 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--- 77 (210)
-.|+|+|+|..|+|||||+|.|++...... ...+..+........-++..+.+.++||||..+....
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 469999999999999999999996654322 1123344444555666788899999999993321110
Q ss_pred ---cccc---------------------ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCC
Q 028305 78 ---GSAF---------------------YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133 (210)
Q Consensus 78 ---~~~~---------------------~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~ 133 (210)
...| =...|+++|.++.+.+.--..-...++.+.. .+++|-|+.|+|.
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~--------~vNvIPvIaKaD~ 154 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK--------RVNVIPVIAKADT 154 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT--------TSEEEEEESTGGG
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc--------cccEEeEEecccc
Confidence 0000 1247899999998754211111234455533 6789999999998
Q ss_pred CCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 134 DGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
....+.....+.+..-++..+ +.++.
T Consensus 155 lt~~el~~~k~~i~~~l~~~~-I~~f~ 180 (281)
T PF00735_consen 155 LTPEELQAFKQRIREDLEENN-IKIFD 180 (281)
T ss_dssp S-HHHHHHHHHHHHHHHHHTT---S--
T ss_pred cCHHHHHHHHHHHHHHHHHcC-ceeec
Confidence 765545556666666666666 55554
No 291
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.45 E-value=4.2e-13 Score=114.35 Aligned_cols=119 Identities=21% Similarity=0.182 Sum_probs=81.4
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCC----------------CcccceeeeEEEEEEEEe--------------C
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFS----------------QQYKATIGADFVTKELQM--------------D 57 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~ 57 (210)
..+...+|+|+|+.++|||||+.+|+...-. .+...+.++......... .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 3556889999999999999999999843311 001111111211111211 2
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCC
Q 028305 58 DKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTD 134 (210)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~ 134 (210)
+....++++||||+.+|.......++.+|++|+|+|+...-......-| ..+... ++|+++++||+|+.
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~~-------~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGE-------RIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHHC-------CCCEEEEEECCccc
Confidence 2357789999999999988888889999999999999876443333333 333222 77999999999986
No 292
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.45 E-value=1.4e-12 Score=86.23 Aligned_cols=114 Identities=25% Similarity=0.332 Sum_probs=78.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCccc-ceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYK-ATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
+||+++|+.|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998777653332 2221 222234456778999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 92 YDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|+..+..+++.+ |...+..... .++|.++++||.|+.+. .....++. ..++++|+++|.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k----~dl~~~~~~nk~dl~~~--~~~~~~~~---------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNK----SDLPILVGGNRDVLEEE--RQVATEEG---------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCC----CCCcEEEEeechhhHhh--CcCCHHHH---------HHHHHHhCCCcchhh
Confidence 999999988765 6655543322 26789999999998542 22222222 234567889999874
No 293
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.44 E-value=6.9e-13 Score=101.68 Aligned_cols=165 Identities=16% Similarity=0.206 Sum_probs=82.9
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCc-ccce----eeeEEEEEEEEeCCeEEEEEEEeCCCccccccccccc--
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQ-YKAT----IGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAF-- 81 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-- 81 (210)
...+++|+|+|.+|+|||||||+|.+-...+. ..++ ++.......+ ...-.+.+||.||.....-....|
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~---p~~pnv~lWDlPG~gt~~f~~~~Yl~ 108 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH---PKFPNVTLWDLPGIGTPNFPPEEYLK 108 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE----SS-TTEEEEEE--GGGSS--HHHHHH
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC---CCCCCCeEEeCCCCCCCCCCHHHHHH
Confidence 35689999999999999999999975332211 1111 1111211111 222349999999965433333333
Q ss_pred ---ccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCC--C-------CCCcccchHHHHH
Q 028305 82 ---YRGADCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTD--G-------GSSRVVPQKKALE 148 (210)
Q Consensus 82 ---~~~~d~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~--~-------~~~~~~~~~~~~~ 148 (210)
+...|.+|++.+.. |.... ...+.+.+. +.|+.+|-+|.|.. + .-.++...+++++
T Consensus 109 ~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~~-------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~ 177 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSER----FTENDVQLAKEIQRM-------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRE 177 (376)
T ss_dssp HTTGGG-SEEEEEESSS------HHHHHHHHHHHHT-------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHH
T ss_pred HccccccCEEEEEeCCC----CchhhHHHHHHHHHc-------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHH
Confidence 44578888877643 22222 233444443 67999999999961 1 1111222233333
Q ss_pred HH----HHcC--CCcEEEecCCC--CCChHHHHHHHHHHHHhccccc
Q 028305 149 WC----AYRG--NIPYFETSAKE--DCNIDEAFLCVAEIALKNEHKD 187 (210)
Q Consensus 149 ~~----~~~~--~~~~~~~Sa~~--~~~v~~~~~~l~~~~~~~~~~~ 187 (210)
.+ ++.+ ..++|.+|+.+ ..++..+.+.|.+.+..+++..
T Consensus 178 ~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~ 224 (376)
T PF05049_consen 178 NCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHA 224 (376)
T ss_dssp HHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHH
T ss_pred HHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHH
Confidence 32 2223 34689999875 4567778888887776665533
No 294
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=7.1e-13 Score=97.78 Aligned_cols=168 Identities=16% Similarity=0.125 Sum_probs=113.2
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCc---CCCcccceeeeEEEEEEEEe------------------------CCeEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNK---FSQQYKATIGADFVTKELQM------------------------DDKLVT 62 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~ 62 (210)
++.++|.++|+..-|||||.++|.+-- ++.+...+.++...+....+ ..-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 789999999999999999999987432 11111112222111111000 011246
Q ss_pred EEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccc
Q 028305 63 LQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVP 142 (210)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~ 142 (210)
+.|.|.|||+.+...+.+-..-.|++++|+..+.+..--.....+..+.-.. -..+|++-||.|+...+.....
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig------ik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG------IKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc------cceEEEEecccceecHHHHHHH
Confidence 8899999999887777777777899999999987543222222233332221 2368999999999886555666
Q ss_pred hHHHHHHHHHcC--CCcEEEecCCCCCChHHHHHHHHHHHHhc
Q 028305 143 QKKALEWCAYRG--NIPYFETSAKEDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 143 ~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 183 (210)
.++++.|.+-.. +.+++++||..+.|++-+++.|...+..-
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 777777775433 46899999999999999998887776543
No 295
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.43 E-value=1.4e-12 Score=96.11 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=75.8
Q ss_pred ccccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHH
Q 028305 72 ERFQSLGSAFYRGADCCVLVYDVNVQK-TFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWC 150 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~ 150 (210)
+++..+...+++++|++++|||+.++. ++..+..|+..+.. .++|+++|+||+|+.+. .....+....+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-------~~i~~vIV~NK~DL~~~--~~~~~~~~~~~~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-------QNIEPIIVLNKIDLLDD--EDMEKEQLDIYR 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECcccCCC--HHHHHHHHHHHH
Confidence 556677778899999999999999887 89999999876643 27899999999999653 333334444443
Q ss_pred HHcCCCcEEEecCCCCCChHHHHHHHHH
Q 028305 151 AYRGNIPYFETSAKEDCNIDEAFLCVAE 178 (210)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 178 (210)
..+ .+++++||++|.|++++|+.+..
T Consensus 95 -~~g-~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 -NIG-YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred -HCC-CeEEEEecCCchhHHHHHhhhcC
Confidence 455 78999999999999999998864
No 296
>PTZ00416 elongation factor 2; Provisional
Probab=99.43 E-value=8.1e-13 Score=112.46 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=79.2
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCC--C--------------cccceeeeEEEEEEEEeC--------CeEEEEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFS--Q--------------QYKATIGADFVTKELQMD--------DKLVTLQ 64 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~ 64 (210)
.+...+|+++|+.++|||||+++|+...-. . +...+.++.......... +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 345679999999999999999999853211 0 001111111111122222 2256799
Q ss_pred EEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCC
Q 028305 65 IWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTD 134 (210)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~ 134 (210)
++||||+.++.......++.+|++|+|+|....-..... ..+..+... ++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~~-------~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQE-------RIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHHc-------CCCEEEEEEChhhh
Confidence 999999999988888889999999999999875333332 223333322 67999999999986
No 297
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.43 E-value=5.8e-13 Score=104.36 Aligned_cols=170 Identities=24% Similarity=0.367 Sum_probs=138.0
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
-+.+|+.|+|..++|||+|+++++.+.|.....+..+ .+++++.+++....+.+.|-+|..+ ..|...+|++|
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavI 100 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVV 100 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhccceE
Confidence 4678999999999999999999999988755443332 4467777888888899999888432 34566789999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
+||.+.+..+|+.+..+...+..+.. ...+|+++++++.-......+.+...+.+.++..+....++++++.+|.++
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~~r~---r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv 177 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSSYRN---ISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNV 177 (749)
T ss_pred EEEEeccccCHHHHHHHHhhcccccc---cccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhH
Confidence 99999999999998877766654433 347899999998877666667888888888888888899999999999999
Q ss_pred HHHHHHHHHHHHhccccccc
Q 028305 170 DEAFLCVAEIALKNEHKDIY 189 (210)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~~ 189 (210)
..+|+.+..++...++.+..
T Consensus 178 ~rvf~~~~~k~i~~~~~qq~ 197 (749)
T KOG0705|consen 178 ERVFQEVAQKIVQLRKYQQL 197 (749)
T ss_pred HHHHHHHHHHHHHHHhhhhc
Confidence 99999999999888665554
No 298
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=7.7e-12 Score=93.31 Aligned_cols=165 Identities=21% Similarity=0.197 Sum_probs=102.3
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhC----cCCC---cccceeeeEEEEEEEEe-------CCeEEEEEEEeCCCcccc
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYN----KFSQ---QYKATIGADFVTKELQM-------DDKLVTLQIWDTAGQERF 74 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~----~~~~---~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~g~~~~ 74 (210)
.+..+++.++|+..||||||.++|..- .|.. ....+.+.+.....+.+ .++.+++.++|+||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 345699999999999999999998732 2222 22233344444333333 455678999999999866
Q ss_pred cccccccccCCcEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHH---
Q 028305 75 QSLGSAFYRGADCCVLVYDVNVQKTFESLQN-WREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWC--- 150 (210)
Q Consensus 75 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~--- 150 (210)
.........-.|..++|+|+.....-...+. .+.++. ....++|+||+|...+..+....++.....
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~---------c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt 154 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL---------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKT 154 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh---------ccceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence 5555555556699999999976422222221 222222 235788889998765433333223222222
Q ss_pred -HH---cCCCcEEEecCCCC----CChHHHHHHHHHHHHh
Q 028305 151 -AY---RGNIPYFETSAKED----CNIDEAFLCVAEIALK 182 (210)
Q Consensus 151 -~~---~~~~~~~~~Sa~~~----~~v~~~~~~l~~~~~~ 182 (210)
+. .++.+++++|++.| .++.++.+.|.+++.+
T Consensus 155 Le~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 155 LESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred HHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 11 13588999999999 6666666666666544
No 299
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.43 E-value=7.6e-12 Score=95.95 Aligned_cols=83 Identities=22% Similarity=0.126 Sum_probs=58.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeE---------------EEEEEEeCCCcccc---
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKL---------------VTLQIWDTAGQERF--- 74 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~--- 74 (210)
++|+++|.||+|||||+|+|++........|.++++.....+.+.+.. ..+.++|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999877544444566656655555544321 25899999994321
Q ss_pred ----cccccccccCCcEEEEEEECC
Q 028305 75 ----QSLGSAFYRGADCCVLVYDVN 95 (210)
Q Consensus 75 ----~~~~~~~~~~~d~vi~v~d~~ 95 (210)
.......++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112233467899999999984
No 300
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.42 E-value=1.7e-12 Score=93.77 Aligned_cols=165 Identities=18% Similarity=0.143 Sum_probs=93.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcc--cceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc-----------c
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQY--KATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG-----------S 79 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----------~ 79 (210)
.+|+|+|..|+||||++|.+++....... ....+..........++ ..+.++||||..+..... .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999977654322 12233344444446667 557899999943322111 1
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccc-----hHHHHHHHHHcC
Q 028305 80 AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVP-----QKKALEWCAYRG 154 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~-----~~~~~~~~~~~~ 154 (210)
......|++++|+..... +... ...+..+.......- -..++||.|..|.......+.. ......+.+..+
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~ 154 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCG 154 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcC
Confidence 123457999999998832 2222 223333333332211 1258888898887654321111 123556666666
Q ss_pred CCcEEEecCC------CCCChHHHHHHHHHHHHhcc
Q 028305 155 NIPYFETSAK------EDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 155 ~~~~~~~Sa~------~~~~v~~~~~~l~~~~~~~~ 184 (210)
..|...+.+ ....+.++++.+-+...++.
T Consensus 155 -~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 155 -GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp -TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -CEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 567776665 34567788887777766654
No 301
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.41 E-value=2.1e-11 Score=93.25 Aligned_cols=123 Identities=16% Similarity=0.146 Sum_probs=83.3
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCCh----------hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEe
Q 028305 60 LVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQ----------KTFESLQNWREEFLKQADPGEHEACPFVLLGN 129 (210)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~ 129 (210)
.+.+.+||++|+...+..|..++.+++++|+|+|+++- ..+......+..+ .......+.|+++++|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i---~~~~~~~~~pill~~N 236 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSI---CNSRWFANTSIILFLN 236 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHH---HhCccccCCCEEEEcc
Confidence 47799999999999999999999999999999999873 2233333333333 3333334889999999
Q ss_pred cCCCCCCC--------------CcccchHHHHHHHHH---------cCCCcEEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 130 KIDTDGGS--------------SRVVPQKKALEWCAY---------RGNIPYFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 130 K~D~~~~~--------------~~~~~~~~~~~~~~~---------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
|.|+.... ......+.+..+... ...+.+..++|.+..++..+|+.+.+.+++...
T Consensus 237 K~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~l 315 (317)
T cd00066 237 KKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNNL 315 (317)
T ss_pred ChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHHh
Confidence 99963210 001122233222211 123556778888899999999999888887654
No 302
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.39 E-value=1.2e-12 Score=92.34 Aligned_cols=152 Identities=19% Similarity=0.272 Sum_probs=99.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc-----ccccccCC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL-----GSAFYRGA 85 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~~~~~ 85 (210)
.-||+++|..|||||++-..+..+-.. +...++.++++.-....+-| ++.+.+||++|++.+... ....++++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 348999999999999987665533221 23445555666655555544 367999999998865433 34567889
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcC---CCcEEEec
Q 028305 86 DCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRG---NIPYFETS 162 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~S 162 (210)
+++++|||++..+-...+..+.+.+...+.... ...+.+..+|.|+.....++...++-........ .+.++++|
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP--~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSP--EAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC--cceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 999999999987665566555554433322211 4468888999999876555544444433333332 36678887
Q ss_pred CCCC
Q 028305 163 AKED 166 (210)
Q Consensus 163 a~~~ 166 (210)
..+.
T Consensus 161 iwDe 164 (295)
T KOG3886|consen 161 IWDE 164 (295)
T ss_pred hhhH
Confidence 7643
No 303
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.38 E-value=1.6e-11 Score=88.54 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=83.1
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCc------------ccc----eeeeEEEEEEEE-----------------
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQ------------YKA----TIGADFVTKELQ----------------- 55 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------------~~~----~~~~~~~~~~~~----------------- 55 (210)
+.....|+|+|+.|+|||||+++++....... ... ..+... ....
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~--~~l~~gcic~~~~~~~~~~l~ 96 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPA--IQINTGKECHLDAHMVAHALE 96 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcE--EEEcCCCcccCChHHHHHHHH
Confidence 34688999999999999999999874311000 000 000000 0000
Q ss_pred -eCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCC
Q 028305 56 -MDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTD 134 (210)
Q Consensus 56 -~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~ 134 (210)
.......+.+++|.|.-... ..+.-..+..+.|+|..+.+.. +......+ ..|.++++||+|+.
T Consensus 97 ~~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~~~~~----------~~a~iiv~NK~Dl~ 161 (207)
T TIGR00073 97 DLPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKYPGMF----------KEADLIVINKADLA 161 (207)
T ss_pred HhccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhhHhHH----------hhCCEEEEEHHHcc
Confidence 00012346667776621000 1111124555677777654321 11111111 45889999999997
Q ss_pred CCCCcccchHHHHHHHH-HcCCCcEEEecCCCCCChHHHHHHHHHH
Q 028305 135 GGSSRVVPQKKALEWCA-YRGNIPYFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
+.. ....++.....+ ..+..+++++|+++|.|++++++++.+.
T Consensus 162 ~~~--~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 162 EAV--GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred ccc--hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 531 111222322222 2334789999999999999999999874
No 304
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.37 E-value=2.3e-11 Score=93.60 Aligned_cols=163 Identities=14% Similarity=0.153 Sum_probs=97.8
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhC----cCC------------Ccccce---eeeEEEE---EEEE---eCCeEEEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYN----KFS------------QQYKAT---IGADFVT---KELQ---MDDKLVTL 63 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~----~~~------------~~~~~~---~~~~~~~---~~~~---~~~~~~~~ 63 (210)
-.-.+.|.|+|+.++|||||+++|.+. ... ++..++ +++++.. ..+. .++...++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 345789999999999999999999977 222 223333 2333322 2222 24556789
Q ss_pred EEEeCCCccccccc-----------------------------cccccc-CCcEEEEEE-ECC----Ch-hhHHHHHHHH
Q 028305 64 QIWDTAGQERFQSL-----------------------------GSAFYR-GADCCVLVY-DVN----VQ-KTFESLQNWR 107 (210)
Q Consensus 64 ~i~D~~g~~~~~~~-----------------------------~~~~~~-~~d~vi~v~-d~~----~~-~s~~~~~~~~ 107 (210)
.++||+|.+.-..+ +...+. ++++.|+|. |.+ .+ ...+.-..++
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 99999993321111 123344 789888888 664 01 1223335667
Q ss_pred HHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHHHhcc
Q 028305 108 EEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 108 ~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
..+... ++|+++|+|+.|-... ...+....+..+++ ++++.+|+.+- .-+++..-+.+.+++..
T Consensus 174 ~eLk~~-------~kPfiivlN~~dp~~~----et~~l~~~l~eky~-vpvl~v~c~~l-~~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 174 EELKEL-------NKPFIILLNSTHPYHP----ETEALRQELEEKYD-VPVLAMDVESM-RESDILSVLEEVLYEFP 237 (492)
T ss_pred HHHHhc-------CCCEEEEEECcCCCCc----hhHHHHHHHHHHhC-CceEEEEHHHc-CHHHHHHHHHHHHhcCC
Confidence 777654 7899999999994322 13333445556666 88888887532 33444444444444443
No 305
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.37 E-value=2e-11 Score=92.80 Aligned_cols=107 Identities=22% Similarity=0.157 Sum_probs=65.2
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCc
Q 028305 60 LVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSR 139 (210)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~ 139 (210)
.+.+.|+||+|... .....+..+|.++++... .+.+.+......+. .+|.++|+||+|+......
T Consensus 126 g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~---~~~~el~~~~~~l~---------~~~~ivv~NK~Dl~~~~~~ 190 (300)
T TIGR00750 126 GYDVIIVETVGVGQ---SEVDIANMADTFVVVTIP---GTGDDLQGIKAGLM---------EIADIYVVNKADGEGATNV 190 (300)
T ss_pred CCCEEEEeCCCCch---hhhHHHHhhceEEEEecC---CccHHHHHHHHHHh---------hhccEEEEEcccccchhHH
Confidence 46789999998432 222346677888887543 33344433333332 5688999999999754211
Q ss_pred ccchHH----HHHHHHH--cCCCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 140 VVPQKK----ALEWCAY--RGNIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 140 ~~~~~~----~~~~~~~--~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
...... ...+... ....+++++|++++.|++++++++.+...
T Consensus 191 ~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 191 TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 110111 1111111 11246999999999999999999998744
No 306
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.9e-11 Score=88.38 Aligned_cols=192 Identities=14% Similarity=0.063 Sum_probs=117.9
Q ss_pred ccccccceEEEEEEcCCCCcHHHHHHHHhhCc----------CC----CcccceeeeEEEEEEEEeCCeEEEEEEEeCCC
Q 028305 5 VNMKRRNLLKVIVLGDSGVGKTSLMNQYVYNK----------FS----QQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70 (210)
Q Consensus 5 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (210)
+-....+.++|..+|+.+-|||||.-++..-- +. .......++.+....+.++..+..+-..|+||
T Consensus 5 kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPG 84 (394)
T COG0050 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPG 84 (394)
T ss_pred hhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCC
Confidence 34456789999999999999999998765110 10 01111223334444444433344567779999
Q ss_pred cccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCC-EEEEEecCCCCCCC-CcccchHHHHH
Q 028305 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACP-FVLLGNKIDTDGGS-SRVVPQKKALE 148 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K~D~~~~~-~~~~~~~~~~~ 148 (210)
+.+|-........+.|+.|+|++..+..--...... .+.+.. ++| ++++.||+|+.++. ..+..+.+.++
T Consensus 85 HaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi--Llarqv------Gvp~ivvflnK~Dmvdd~ellelVemEvre 156 (394)
T COG0050 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI--LLARQV------GVPYIVVFLNKVDMVDDEELLELVEMEVRE 156 (394)
T ss_pred hHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh--hhhhhc------CCcEEEEEEecccccCcHHHHHHHHHHHHH
Confidence 999988888888889999999999884322222111 111111 554 77889999998743 34556678888
Q ss_pred HHHHcC----CCcEEEecCCC-CCC---hHHHHHHHHHHHHhcccccccCCCCCcceecccccc
Q 028305 149 WCAYRG----NIPYFETSAKE-DCN---IDEAFLCVAEIALKNEHKDIYYQPQGISETVSEVEQ 204 (210)
Q Consensus 149 ~~~~~~----~~~~~~~Sa~~-~~~---v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (210)
++..++ ..+++.-||.. .+| -.+-...|.+++.++.+........+....++....
T Consensus 157 LLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfs 220 (394)
T COG0050 157 LLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFS 220 (394)
T ss_pred HHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcccccccccceeeEE
Confidence 888887 35677777743 222 233344455555556555555444444444444433
No 307
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.2e-11 Score=100.28 Aligned_cols=172 Identities=22% Similarity=0.247 Sum_probs=113.3
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC----------------CeEEEEEEEeCCCcc
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD----------------DKLVTLQIWDTAGQE 72 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~~ 72 (210)
+-+..-+||+|+..+|||-|+..+.+.+.......+++.++.-..+... -.---+.++||||++
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 4566779999999999999999998766554444444333221111111 001237889999999
Q ss_pred cccccccccccCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC-------CC----
Q 028305 73 RFQSLGSAFYRGADCCVLVYDVNVQ---KTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG-------SS---- 138 (210)
Q Consensus 73 ~~~~~~~~~~~~~d~vi~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~-------~~---- 138 (210)
.|..+.......||.+|+|+|+-+. .+.+.+ +.+... +.|+||.+||+|..=. ..
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~r-------ktpFivALNKiDRLYgwk~~p~~~i~~~l 620 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRMR-------KTPFIVALNKIDRLYGWKSCPNAPIVEAL 620 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhHHH----HHHHhc-------CCCeEEeehhhhhhcccccCCCchHHHHH
Confidence 9999999999999999999999764 333332 222221 7799999999997311 00
Q ss_pred ----c-------ccchHHHHHHHHHc-------------CCCcEEEecCCCCCChHHHHHHHHHHHHhcccccccCC
Q 028305 139 ----R-------VVPQKKALEWCAYR-------------GNIPYFETSAKEDCNIDEAFLCVAEIALKNEHKDIYYQ 191 (210)
Q Consensus 139 ----~-------~~~~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~~~~ 191 (210)
. ......+.+|+..- ..+.++++||..|+||-+|+.+|++........+-.|.
T Consensus 621 kkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~ 697 (1064)
T KOG1144|consen 621 KKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYV 697 (1064)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 00111112222111 02558999999999999999999999877766544443
No 308
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2.1e-11 Score=93.76 Aligned_cols=158 Identities=19% Similarity=0.101 Sum_probs=111.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCC---CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFS---QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
.|+-.|+-.-|||||++.+.+..-. .....+++++.........+ ..+.|+|.||++++-......+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 4778899999999999999865543 33344555666555544433 479999999999998888888889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|++.++.-.....+.. ..+ .... ....++|+||+|..+....+...+++..... +.+.+++.+|+++|+|++
T Consensus 80 vV~~deGl~~qtgEhL-~iL-dllg-----i~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~ 151 (447)
T COG3276 80 VVAADEGLMAQTGEHL-LIL-DLLG-----IKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIE 151 (447)
T ss_pred EEeCccCcchhhHHHH-HHH-HhcC-----CCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHH
Confidence 9999765444443322 122 1111 2246999999999865322233333333333 445789999999999999
Q ss_pred HHHHHHHHHHH
Q 028305 171 EAFLCVAEIAL 181 (210)
Q Consensus 171 ~~~~~l~~~~~ 181 (210)
++.+.|....-
T Consensus 152 ~Lk~~l~~L~~ 162 (447)
T COG3276 152 ELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHhhh
Confidence 99999999984
No 309
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.34 E-value=5.6e-12 Score=87.97 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=43.0
Q ss_pred EEEEEeCCCccc----ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecC
Q 028305 62 TLQIWDTAGQER----FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131 (210)
Q Consensus 62 ~~~i~D~~g~~~----~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~ 131 (210)
.+.++||||... .......++..+|++|+|.+.++..+-.....+....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-------~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-------KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-------CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-------CCeEEEEEcCC
Confidence 488999999532 3355677889999999999999865544444444444322 33589999984
No 310
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.1e-11 Score=95.05 Aligned_cols=121 Identities=19% Similarity=0.250 Sum_probs=84.9
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHh--hCcCC--------------C----cccceeeeEEEEEEEEeCCeEEEEEEEeCC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYV--YNKFS--------------Q----QYKATIGADFVTKELQMDDKLVTLQIWDTA 69 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~--~~~~~--------------~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 69 (210)
.+.-..+++-+|.+|||||-.+|+ ++... . .-....++......++++.....+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 456678999999999999999876 21111 0 001122445555555556566889999999
Q ss_pred CcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC
Q 028305 70 GQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS 138 (210)
Q Consensus 70 g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~ 138 (210)
||++|...+...+..+|..++|+|....---..+ +++....- .++|++-++||.|....++
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KLfeVcrl-------R~iPI~TFiNKlDR~~rdP 150 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KLFEVCRL-------RDIPIFTFINKLDREGRDP 150 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHH-HHHHHHhh-------cCCceEEEeeccccccCCh
Confidence 9999999999999999999999999864322222 22222221 1889999999999976543
No 311
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.32 E-value=5.7e-12 Score=93.17 Aligned_cols=166 Identities=15% Similarity=0.085 Sum_probs=110.3
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc--ccccc------c
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER--FQSLG------S 79 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~------~ 79 (210)
......-|.|+|..|+|||||+++|......+...-..+.+.+....+..+. -.+.+.||.|.-. ...+. .
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATL 252 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATL 252 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHH
Confidence 3455677999999999999999999966665554445555555555544333 3477889999432 11111 2
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEE
Q 028305 80 AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYF 159 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
.-...+|.++.|.|+++|..-......+..+....-+.....-.++=|-||.|..+... ..+ . ..-+
T Consensus 253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~----e~E------~---n~~v 319 (410)
T KOG0410|consen 253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV----EEE------K---NLDV 319 (410)
T ss_pred HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC----ccc------c---CCcc
Confidence 22567999999999999987777666666665542221111224777888999765311 111 1 1257
Q ss_pred EecCCCCCChHHHHHHHHHHHHhccccc
Q 028305 160 ETSAKEDCNIDEAFLCVAEIALKNEHKD 187 (210)
Q Consensus 160 ~~Sa~~~~~v~~~~~~l~~~~~~~~~~~ 187 (210)
.+|+.+|+|.+++.+.+-.+.......+
T Consensus 320 ~isaltgdgl~el~~a~~~kv~~~t~~~ 347 (410)
T KOG0410|consen 320 GISALTGDGLEELLKAEETKVASETTVD 347 (410)
T ss_pred ccccccCccHHHHHHHHHHHhhhhheee
Confidence 7999999999999999988876665533
No 312
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.32 E-value=9.5e-11 Score=90.35 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=82.2
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCCh----------hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEec
Q 028305 61 VTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQ----------KTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K 130 (210)
..+.+||.+|+...+..|..++.+++++|+|+|+++- ..+......+..+ +......+.|++|++||
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l---~~~~~~~~~piil~~NK 260 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESI---CNSRWFANTSIILFLNK 260 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHH---HcCccccCCcEEEEEec
Confidence 5689999999999999999999999999999999963 2333333333333 33333447899999999
Q ss_pred CCCCCCC----C---------cccchHHHHHHH-----HHc-----CCCcEEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 131 IDTDGGS----S---------RVVPQKKALEWC-----AYR-----GNIPYFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 131 ~D~~~~~----~---------~~~~~~~~~~~~-----~~~-----~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
.|+.... + .....+.+..+. ... ..+....++|.+-.++..+|+.+.+.+++...
T Consensus 261 ~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 261 IDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred HHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 9973210 0 001122222221 111 22556778889999999999998888887654
No 313
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.31 E-value=7.8e-11 Score=88.83 Aligned_cols=144 Identities=19% Similarity=0.227 Sum_probs=97.5
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCc----------ccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQ----------YKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL 77 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (210)
++...|+|+++|+.|+|||||+|.|++...... ..+++.+..+...+.-++.++.++++||||..+.-..
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 346789999999999999999999996633311 2355556666777777888999999999994432111
Q ss_pred c--------------cccc--------------cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEe
Q 028305 78 G--------------SAFY--------------RGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGN 129 (210)
Q Consensus 78 ~--------------~~~~--------------~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~ 129 (210)
. ..|+ ..+|+++|.+..+...--.--...++.+.. .+.+|-|+.
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~--------~vNlIPVI~ 170 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK--------RVNLIPVIA 170 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc--------ccCeeeeee
Confidence 0 0111 237899999887653211111233444433 567999999
Q ss_pred cCCCCCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 130 KIDTDGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 130 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
|+|....++.....+.+.+....+. +++|.
T Consensus 171 KaD~lT~~El~~~K~~I~~~i~~~n-I~vf~ 200 (373)
T COG5019 171 KADTLTDDELAEFKERIREDLEQYN-IPVFD 200 (373)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHhC-CceeC
Confidence 9999776666677777777777776 66663
No 314
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.31 E-value=2e-11 Score=90.78 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=57.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeE---------------EEEEEEeCCCccc------
Q 028305 15 VIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKL---------------VTLQIWDTAGQER------ 73 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~------ 73 (210)
|+++|.||+|||||.|+|++........++++++.....+.+.+.. ..+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999877655555666666666666554432 2589999999432
Q ss_pred -ccccccccccCCcEEEEEEECC
Q 028305 74 -FQSLGSAFYRGADCCVLVYDVN 95 (210)
Q Consensus 74 -~~~~~~~~~~~~d~vi~v~d~~ 95 (210)
........++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1111223367899999999873
No 315
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=3.4e-11 Score=99.61 Aligned_cols=122 Identities=20% Similarity=0.213 Sum_probs=85.6
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCC----Cc------------ccceeeeEEEEEEEEeCCe-EEEEEEEeCCC
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFS----QQ------------YKATIGADFVTKELQMDDK-LVTLQIWDTAG 70 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g 70 (210)
......+|.++|+.++|||||..+++...-. .. .....+++.........-. ...++++||||
T Consensus 6 ~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPG 85 (697)
T COG0480 6 PLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPG 85 (697)
T ss_pred ccccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCC
Confidence 3667899999999999999999998722211 00 0111122333333332223 47899999999
Q ss_pred cccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC
Q 028305 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGS 137 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~ 137 (210)
|-+|.......++-+|++++|+|....-....-.-|.... ++ ++|.++++||+|....+
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~-~~-------~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD-KY-------GVPRILFVNKMDRLGAD 144 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh-hc-------CCCeEEEEECccccccC
Confidence 9999999999999999999999998754433333343333 22 88999999999987654
No 316
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=3.4e-10 Score=86.04 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=97.9
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCc---------ccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQ---------YKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL 77 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (210)
.++...|++.++|+.|.|||||+|.|+...+... ...+..+......+.-++.+++++++||||..+....
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn 95 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN 95 (366)
T ss_pred HhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccc
Confidence 3455679999999999999999999987644321 2224455555556666788999999999994332111
Q ss_pred c--------------c-----------ccc--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEec
Q 028305 78 G--------------S-----------AFY--RGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130 (210)
Q Consensus 78 ~--------------~-----------~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K 130 (210)
. . ..+ ..+|+++|.+..+...--..-...++.+.. .+.+|-|+.|
T Consensus 96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~--------~vNiIPVI~K 167 (366)
T KOG2655|consen 96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK--------KVNLIPVIAK 167 (366)
T ss_pred cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc--------cccccceeec
Confidence 0 0 111 147899999987654211111233344432 6789999999
Q ss_pred CCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 131 IDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 131 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
+|.....+.....+.+.+.+.... +.++....-..
T Consensus 168 aD~lT~~El~~~K~~I~~~i~~~n-I~vf~fp~~~~ 202 (366)
T KOG2655|consen 168 ADTLTKDELNQFKKRIRQDIEEHN-IKVFDFPTDES 202 (366)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcC-cceecCCCCcc
Confidence 998776556666677777777666 66665554433
No 317
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.23 E-value=3.3e-10 Score=92.06 Aligned_cols=121 Identities=18% Similarity=0.168 Sum_probs=72.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcC-CCcc-cceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc-------c---
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKF-SQQY-KATIGADFVTKELQMDDKLVTLQIWDTAGQERFQS-------L--- 77 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~--- 77 (210)
...++|+|+|.+|+||||++|+|++... .... .+.+ ..........++ ..+.++||||..+... .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~T-Tr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGT-TSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCc-eEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHH
Confidence 4567999999999999999999998753 3222 1222 222222233444 5689999999554311 1
Q ss_pred cccccc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCC
Q 028305 78 GSAFYR--GADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDG 135 (210)
Q Consensus 78 ~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~ 135 (210)
...++. .+|++++|..++.......-..++..+...+...- -.-+|||.|+.|..+
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lp 250 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCC
Confidence 112333 47999999988643322122244455544433222 126899999999865
No 318
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.22 E-value=3.1e-11 Score=83.49 Aligned_cols=80 Identities=18% Similarity=0.036 Sum_probs=51.1
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHH-HcCCCcEEEecCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCA-YRGNIPYFETSAKE 165 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~ 165 (210)
.-|+|+|+...+.. ..+-...+ ...-++|+||.|+.+.-.+ ..+...+-++ -.+..+++++|+++
T Consensus 120 ~~v~VidvteGe~~--P~K~gP~i----------~~aDllVInK~DLa~~v~~--dlevm~~da~~~np~~~ii~~n~kt 185 (202)
T COG0378 120 LRVVVIDVTEGEDI--PRKGGPGI----------FKADLLVINKTDLAPYVGA--DLEVMARDAKEVNPEAPIIFTNLKT 185 (202)
T ss_pred eEEEEEECCCCCCC--cccCCCce----------eEeeEEEEehHHhHHHhCc--cHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 77888888764321 01111111 1156899999999876333 2233333332 34468999999999
Q ss_pred CCChHHHHHHHHHHH
Q 028305 166 DCNIDEAFLCVAEIA 180 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~ 180 (210)
|.|+++++.++...+
T Consensus 186 g~G~~~~~~~i~~~~ 200 (202)
T COG0378 186 GEGLDEWLRFIEPQA 200 (202)
T ss_pred CcCHHHHHHHHHhhc
Confidence 999999999987654
No 319
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.21 E-value=2.2e-11 Score=88.19 Aligned_cols=153 Identities=18% Similarity=0.164 Sum_probs=87.3
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-----------Cccccee---------------eeEEEEEEEEeCCe----
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-----------QQYKATI---------------GADFVTKELQMDDK---- 59 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~~---- 59 (210)
...+.|.|.|+||+|||||+..|...-.. +.+..+- ....+.+.+-..+.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 45789999999999999999987621110 1110000 01222333322221
Q ss_pred --------------EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEE
Q 028305 60 --------------LVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFV 125 (210)
Q Consensus 60 --------------~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~i 125 (210)
.+.+.+++|.|-.. .-......+|.+++|....-.+..+.++.-+-++ +-+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQ---sE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------------aDi 171 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQ---SEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEI------------ADI 171 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSST---HHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------------SE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCc---cHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhh------------ccE
Confidence 25577888877321 1122355689999999887665555544433333 569
Q ss_pred EEEecCCCCCCCCcccchHHHHHHHHHcC------CCcEEEecCCCCCChHHHHHHHHHHH
Q 028305 126 LLGNKIDTDGGSSRVVPQKKALEWCAYRG------NIPYFETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 126 lv~~K~D~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
+|+||+|... ......+++....... ..+++.+||.++.|++++++.|.+..
T Consensus 172 ~vVNKaD~~g---A~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 172 FVVNKADRPG---ADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp EEEE--SHHH---HHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEeCCChHH---HHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 9999999654 2333444444443222 35899999999999999999988754
No 320
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.1e-09 Score=83.24 Aligned_cols=84 Identities=18% Similarity=0.103 Sum_probs=60.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC----------------CeEEEEEEEeCCCc----
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD----------------DKLVTLQIWDTAGQ---- 71 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~---- 71 (210)
.+++.+||.||+|||||.|+++.........|..++++......+. -....+.++|.+|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4689999999999999999999777544455666666655554431 12457899999882
Q ss_pred ---ccccccccccccCCcEEEEEEECC
Q 028305 72 ---ERFQSLGSAFYRGADCCVLVYDVN 95 (210)
Q Consensus 72 ---~~~~~~~~~~~~~~d~vi~v~d~~ 95 (210)
+.....-..-++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 223333344578899999999987
No 321
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.17 E-value=4.9e-09 Score=75.35 Aligned_cols=162 Identities=17% Similarity=0.122 Sum_probs=105.7
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc-------cccccccc
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER-------FQSLGSAF 81 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~ 81 (210)
+.-..+|+++|.|.+|||||+..+............++.......+.+++. .+++.|.||..+ -.......
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEE
Confidence 455789999999999999999998865554444455667777788888874 578889999322 12334556
Q ss_pred ccCCcEEEEEEECCChhhHHH-HHHHHHHH-----------------------------------------HHhcCC---
Q 028305 82 YRGADCCVLVYDVNVQKTFES-LQNWREEF-----------------------------------------LKQADP--- 116 (210)
Q Consensus 82 ~~~~d~vi~v~d~~~~~s~~~-~~~~~~~l-----------------------------------------~~~~~~--- 116 (210)
.+.+|.+++|.|.+..+.-.. +..-+..+ ..+.-.
T Consensus 137 ArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Nae 216 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAE 216 (364)
T ss_pred eecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccce
Confidence 788999999999986543221 12211111 000000
Q ss_pred -----------------CCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHH
Q 028305 117 -----------------GEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 117 -----------------~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
....-++.+-|-||+|. +..++...+++.-+ -+-+|+..+.|++.+++.+-+.
T Consensus 217 vl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-------vs~eevdrlAr~Pn---svViSC~m~lnld~lle~iWe~ 286 (364)
T KOG1486|consen 217 VLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-------VSIEEVDRLARQPN---SVVISCNMKLNLDRLLERIWEE 286 (364)
T ss_pred EEEecCCChHHHHHHHhccceEEEEEEEeeccce-------ecHHHHHHHhcCCC---cEEEEeccccCHHHHHHHHHHH
Confidence 00002466666677764 44677777776433 4667888899999999988877
Q ss_pred HHh
Q 028305 180 ALK 182 (210)
Q Consensus 180 ~~~ 182 (210)
+.-
T Consensus 287 l~L 289 (364)
T KOG1486|consen 287 LNL 289 (364)
T ss_pred hce
Confidence 643
No 322
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2.2e-10 Score=92.13 Aligned_cols=117 Identities=25% Similarity=0.258 Sum_probs=82.8
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccce-----------------eeeEEE---EEEEEeCCeEEEEEEEeC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKAT-----------------IGADFV---TKELQMDDKLVTLQIWDT 68 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-----------------~~~~~~---~~~~~~~~~~~~~~i~D~ 68 (210)
.....+|+++|+-+.|||+|+..|....-+..+... .++... ...-...+..+-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 456789999999999999999998855443111100 011110 111123566778999999
Q ss_pred CCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCC
Q 028305 69 AGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133 (210)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~ 133 (210)
|||..|.......++.+|++++++|+...-.+.. .+.++...+. +.|+++|+||.|+
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq~-------~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQN-------RLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHhc-------cCcEEEEEehhHH
Confidence 9999999999999999999999999987665544 2333332222 7799999999996
No 323
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=8.3e-10 Score=78.68 Aligned_cols=150 Identities=18% Similarity=0.247 Sum_probs=93.8
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCC---------cccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQ---------QYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL 77 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (210)
|+..-.|+|.|+|..|.|||||+|.|+...... ....++.+......+.-++...++.++||||..++...
T Consensus 41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN 120 (336)
T KOG1547|consen 41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN 120 (336)
T ss_pred HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence 344568999999999999999999987433221 12223333444444455677889999999994432211
Q ss_pred ---c-----------cccc--------------cCCcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCCEEEEE
Q 028305 78 ---G-----------SAFY--------------RGADCCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLG 128 (210)
Q Consensus 78 ---~-----------~~~~--------------~~~d~vi~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~~~p~ilv~ 128 (210)
| ..|+ ..+++++|.+..+... +..+ ..+++.+.+ -+.++-|+
T Consensus 121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt~--------vvNvvPVI 191 (336)
T KOG1547|consen 121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLTE--------VVNVVPVI 191 (336)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHhh--------hheeeeeE
Confidence 1 1111 1367888888776432 2221 234444433 34688889
Q ss_pred ecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 129 NKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 129 ~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
.|+|...-+++....+.++.-...++ +.+++--+.+-
T Consensus 192 akaDtlTleEr~~FkqrI~~el~~~~-i~vYPq~~fde 228 (336)
T KOG1547|consen 192 AKADTLTLEERSAFKQRIRKELEKHG-IDVYPQDSFDE 228 (336)
T ss_pred eecccccHHHHHHHHHHHHHHHHhcC-ccccccccccc
Confidence 99997654457777777777777777 77776655443
No 324
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.14 E-value=7.2e-10 Score=84.22 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=88.5
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCC
Q 028305 60 LVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQK-------TFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132 (210)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D 132 (210)
+..+.++|.+||...+..|...+.+++++|+|.+++.-+ ....+..-+..+...+...-..+.++|++.||.|
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~D 273 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKD 273 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHH
Confidence 367999999999999999999999999999999998521 1223333444455555555556889999999999
Q ss_pred CCCCC--------------CcccchHHHHHHH--------HHc-CCCcEEEecCCCCCChHHHHHHHHHHHHhccccc
Q 028305 133 TDGGS--------------SRVVPQKKALEWC--------AYR-GNIPYFETSAKEDCNIDEAFLCVAEIALKNEHKD 187 (210)
Q Consensus 133 ~~~~~--------------~~~~~~~~~~~~~--------~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~ 187 (210)
+.++. .. ...+++..+. ... ..+.+..+.|.+-.+|+.+|..+.+.+...+.++
T Consensus 274 LFeEKi~~~~~~~~Fpdy~G~-~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk~ 350 (354)
T KOG0082|consen 274 LFEEKIKKVPLTDCFPDYKGV-NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLKD 350 (354)
T ss_pred HHHHHhccCchhhhCcCCCCC-CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 84321 11 1222222221 111 2345677889999999999999999998877643
No 325
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.14 E-value=5.7e-10 Score=81.45 Aligned_cols=69 Identities=16% Similarity=0.102 Sum_probs=42.5
Q ss_pred EEEEEEeCCCccc-------------ccccccccccC-CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEE
Q 028305 61 VTLQIWDTAGQER-------------FQSLGSAFYRG-ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVL 126 (210)
Q Consensus 61 ~~~~i~D~~g~~~-------------~~~~~~~~~~~-~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~il 126 (210)
..+.++||||-.. ...+...|+++ .+++++|+|.+..-.-.....+...+... +.|+++
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~-------~~rti~ 197 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ-------GERTIG 197 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc-------CCcEEE
Confidence 4689999999532 12234556664 45888999876532222222233333221 679999
Q ss_pred EEecCCCCCC
Q 028305 127 LGNKIDTDGG 136 (210)
Q Consensus 127 v~~K~D~~~~ 136 (210)
|+||.|..+.
T Consensus 198 ViTK~D~~~~ 207 (240)
T smart00053 198 VITKLDLMDE 207 (240)
T ss_pred EEECCCCCCc
Confidence 9999998753
No 326
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.14 E-value=4.3e-10 Score=83.76 Aligned_cols=58 Identities=17% Similarity=-0.026 Sum_probs=40.8
Q ss_pred CCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHH
Q 028305 121 ACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 121 ~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
..+-++|+||+|+.+..... .......+....+..+++++|+++|.|++++++||.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~d-le~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFD-VEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHH-HHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 44789999999997531111 12222333333456889999999999999999999774
No 327
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.13 E-value=7.3e-10 Score=84.02 Aligned_cols=160 Identities=19% Similarity=0.127 Sum_probs=102.0
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcc--------------cceeeeEEEEEEEEeCCe--------------
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQY--------------KATIGADFVTKELQMDDK-------------- 59 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-------------- 59 (210)
..+..+.|.+.|+.+.|||||+..|..+...+.. ..+.+.+.....+-+++.
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 3567899999999999999999988866554221 112222333333333222
Q ss_pred -------EEEEEEEeCCCccccccccccc--ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEec
Q 028305 60 -------LVTLQIWDTAGQERFQSLGSAF--YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130 (210)
Q Consensus 60 -------~~~~~i~D~~g~~~~~~~~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K 130 (210)
..-+.+.||.|++.|......- -...|..++++.+++..+-..-+.+ ..+... ..|++++.||
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHL-gi~~a~-------~lPviVvvTK 264 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHL-GIALAM-------ELPVIVVVTK 264 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhh-hhhhhh-------cCCEEEEEEe
Confidence 1347889999999876555333 3568999999999886554332222 222111 7799999999
Q ss_pred CCCCCCCCcccchHHHHHHHHHc------------------------CCCcEEEecCCCCCChHHHHHH
Q 028305 131 IDTDGGSSRVVPQKKALEWCAYR------------------------GNIPYFETSAKEDCNIDEAFLC 175 (210)
Q Consensus 131 ~D~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~Sa~~~~~v~~~~~~ 175 (210)
+|+.+++..+...+++....+.. +-++++.+|+-+|+|++-+.+.
T Consensus 265 ~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~ 333 (527)
T COG5258 265 IDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF 333 (527)
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence 99987654443344443333322 1367999999999997644433
No 328
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.1e-09 Score=80.28 Aligned_cols=183 Identities=15% Similarity=0.084 Sum_probs=120.3
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhh----C---c---CC----CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVY----N---K---FS----QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~----~---~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (210)
.++.+..+|.-+|+..-|||||--++.. . . |. .......++.+...++.+......+--.|+|||.
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence 3567889999999999999999877651 1 1 11 1112233455555666655555556667999999
Q ss_pred cccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-CEEEEEecCCCC-CCCCcccchHHHHHHH
Q 028305 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEAC-PFVLLGNKIDTD-GGSSRVVPQKKALEWC 150 (210)
Q Consensus 73 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~-p~ilv~~K~D~~-~~~~~~~~~~~~~~~~ 150 (210)
+|-.....-..+.|+.|+|+..+|..--+.-+.. .+.+.. ++ .+++++||.|+. +.+..+..+.++++++
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHl--LLArQV------GV~~ivvfiNKvD~V~d~e~leLVEmE~RElL 200 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQTREHL--LLARQV------GVKHIVVFINKVDLVDDPEMLELVEMEIRELL 200 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcchHHHH--HHHHHc------CCceEEEEEecccccCCHHHHHHHHHHHHHHH
Confidence 9988888888889999999999985432222221 111211 22 588999999998 4444667777889999
Q ss_pred HHcC----CCcEEEecC---CCCCChH---HHHHHHHHHHHhcccccccCCCCCcce
Q 028305 151 AYRG----NIPYFETSA---KEDCNID---EAFLCVAEIALKNEHKDIYYQPQGISE 197 (210)
Q Consensus 151 ~~~~----~~~~~~~Sa---~~~~~v~---~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (210)
..++ +.+++.-|| .+|.+-+ +....|.+++..+.+..+.....+.-.
T Consensus 201 se~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~ 257 (449)
T KOG0460|consen 201 SEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLL 257 (449)
T ss_pred HHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCcee
Confidence 8887 567888776 4453322 456666677766666544444443333
No 329
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.05 E-value=4.5e-09 Score=77.51 Aligned_cols=107 Identities=17% Similarity=0.119 Sum_probs=66.0
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcc
Q 028305 61 VTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRV 140 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~ 140 (210)
+.+.|++|.|-. +.--.....+|.++++.-..-.+..+.++. -+. .+--++|+||.|.... +
T Consensus 144 ~DvIIVETVGvG---Qsev~I~~~aDt~~~v~~pg~GD~~Q~iK~---Gim---------EiaDi~vINKaD~~~A---~ 205 (323)
T COG1703 144 YDVIIVETVGVG---QSEVDIANMADTFLVVMIPGAGDDLQGIKA---GIM---------EIADIIVINKADRKGA---E 205 (323)
T ss_pred CCEEEEEecCCC---cchhHHhhhcceEEEEecCCCCcHHHHHHh---hhh---------hhhheeeEeccChhhH---H
Confidence 457888887732 112234556899888876554444444433 232 2245899999996543 1
Q ss_pred cchHHHHHHHH--------HcCCCcEEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 141 VPQKKALEWCA--------YRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 141 ~~~~~~~~~~~--------~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
....+.....+ .....+++.+||.+|+|++++++.+.+...-...
T Consensus 206 ~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 206 KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred HHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 22222222111 1225779999999999999999999887654444
No 330
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.02 E-value=2.2e-09 Score=76.38 Aligned_cols=95 Identities=21% Similarity=0.165 Sum_probs=64.2
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHH---
Q 028305 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWC--- 150 (210)
Q Consensus 74 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~--- 150 (210)
+...+..+++.+|++++|+|++++.. .|...+.... .+.|+++|+||+|+.+.. ...+....+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-----~~~~~ilV~NK~Dl~~~~---~~~~~~~~~~~~~ 90 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-----GNNPVILVGNKIDLLPKD---KNLVRIKNWLRAK 90 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-----CCCcEEEEEEchhcCCCC---CCHHHHHHHHHHH
Confidence 56777888999999999999987542 1222221111 167999999999996532 2222222222
Q ss_pred --HHcC--CCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 151 --AYRG--NIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 151 --~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
...+ ...++++||++|.|++++++.|.+.+.
T Consensus 91 ~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 91 AAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 2222 136899999999999999999988764
No 331
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.01 E-value=1.2e-09 Score=79.48 Aligned_cols=158 Identities=17% Similarity=0.187 Sum_probs=92.7
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccc-eeeeEEEEEEEEeCCeEEEEEEEeCCC----------ccccccc
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKA-TIGADFVTKELQMDDKLVTLQIWDTAG----------QERFQSL 77 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 77 (210)
+....+++++|..|+|||+|++.++.......... ..+.......+.+ +..+.+.|.|| ..++...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhHh
Confidence 46679999999999999999999885543322111 2222222333333 24588889999 2234444
Q ss_pred ccccccCCc---EEEEEEECCCh-hhHH-HHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC--cccchHHHHHHH
Q 028305 78 GSAFYRGAD---CCVLVYDVNVQ-KTFE-SLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS--RVVPQKKALEWC 150 (210)
Q Consensus 78 ~~~~~~~~d---~vi~v~d~~~~-~s~~-~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~--~~~~~~~~~~~~ 150 (210)
...|+.+-+ -+.+.+|.+-+ ...+ ....|..+- ++|+.+|.||+|...... .......+....
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~----------~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f 279 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN----------NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF 279 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc----------CCCeEEeeehhhhhhhccccccCccccceeeh
Confidence 444543322 34445555533 1112 223444443 899999999999754322 122222222211
Q ss_pred HHcC------CCcEEEecCCCCCChHHHHHHHHHH
Q 028305 151 AYRG------NIPYFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 151 ~~~~------~~~~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
+... ..+++.+|+.++.|+++++-.+.+.
T Consensus 280 ~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 280 QGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred hhccccceeccCCceeeecccccCceeeeeehhhh
Confidence 1111 2567889999999999998887764
No 332
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=6e-09 Score=74.45 Aligned_cols=168 Identities=18% Similarity=0.268 Sum_probs=102.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc---cccccCCcEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG---SAFYRGADCCV 89 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---~~~~~~~d~vi 89 (210)
.+|++.|..-+||||+..-......+.+..-...+..... -++.+.-+.+.+||.||+..+..-. +..++.+.++|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~-d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITR-DHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccH-hhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 4599999999999998776554443322111111111011 1222345789999999988765443 45578899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH----cC----CCcEEEe
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY----RG----NIPYFET 161 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~ 161 (210)
+|+|..+ +..+.+......+.+....+ .++.+-+.++|.|..+++.+......+.+.... .+ .+.++.+
T Consensus 107 fvIDaQd-dy~eala~L~~~v~raykvN--p~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT 183 (347)
T KOG3887|consen 107 FVIDAQD-DYMEALARLHMTVERAYKVN--PNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT 183 (347)
T ss_pred EEEechH-HHHHHHHHHHHHhhheeecC--CCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence 9999864 23334444444444433332 277888999999987765444333333332221 11 2446666
Q ss_pred cCCCCCChHHHHHHHHHHHHhccc
Q 028305 162 SAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
|-. ...+-|+|..+++++....+
T Consensus 184 SIy-DHSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 184 SIY-DHSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred eec-chHHHHHHHHHHHHHhhhch
Confidence 654 56899999999999876654
No 333
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.96 E-value=4.4e-09 Score=72.43 Aligned_cols=95 Identities=21% Similarity=0.123 Sum_probs=62.6
Q ss_pred cccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcC
Q 028305 75 QSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRG 154 (210)
Q Consensus 75 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~ 154 (210)
+.+....++++|++++|+|++++...... .+...+.. .+.|+++|+||+|+.+. .. ......+....+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~-------~~~p~iiv~NK~Dl~~~--~~--~~~~~~~~~~~~ 70 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE-------LGKKLLIVLNKADLVPK--EV--LEKWKSIKESEG 70 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh-------CCCcEEEEEEhHHhCCH--HH--HHHHHHHHHhCC
Confidence 34556677789999999999876432221 11111211 15799999999998542 11 111112333333
Q ss_pred CCcEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 155 NIPYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
.+++++||+++.|++++++.+.+.+..
T Consensus 71 -~~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 71 -IPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred -CcEEEEEccccccHHHHHHHHHHHHhh
Confidence 679999999999999999999887753
No 334
>PRK12289 GTPase RsgA; Reviewed
Probab=98.94 E-value=9.4e-09 Score=79.38 Aligned_cols=89 Identities=15% Similarity=0.035 Sum_probs=64.0
Q ss_pred cccccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCc
Q 028305 79 SAFYRGADCCVLVYDVNVQK-TFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIP 157 (210)
Q Consensus 79 ~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
...++++|.+++|+|+.++. ....+..|+..... .++|+++|+||+|+... . . .+.........+ +.
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~-------~~ip~ILVlNK~DLv~~--~-~-~~~~~~~~~~~g-~~ 151 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAES-------TGLEIVLCLNKADLVSP--T-E-QQQWQDRLQQWG-YQ 151 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEchhcCCh--H-H-HHHHHHHHHhcC-Ce
Confidence 44578999999999998775 44455666655432 17899999999999642 1 1 122233334555 78
Q ss_pred EEEecCCCCCChHHHHHHHHHH
Q 028305 158 YFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 158 ~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
++++||+++.|++++++.+...
T Consensus 152 v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 152 PLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEEEcCCCCCHHHHhhhhccc
Confidence 9999999999999999988654
No 335
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.93 E-value=8.6e-09 Score=77.89 Aligned_cols=88 Identities=18% Similarity=0.084 Sum_probs=66.2
Q ss_pred cccccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCc
Q 028305 79 SAFYRGADCCVLVYDVNVQK-TFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIP 157 (210)
Q Consensus 79 ~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
...+.++|.+++|+|+.++. ++..+..|+..+... ++|+++|+||+|+.+. . ............+ .+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~-------~ip~iIVlNK~DL~~~--~--~~~~~~~~~~~~g-~~ 140 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA-------GIEPVIVLTKADLLDD--E--EEELELVEALALG-YP 140 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc-------CCCEEEEEEHHHCCCh--H--HHHHHHHHHHhCC-Ce
Confidence 44578899999999999887 778888887766532 6799999999999653 1 1112222333445 78
Q ss_pred EEEecCCCCCChHHHHHHHHH
Q 028305 158 YFETSAKEDCNIDEAFLCVAE 178 (210)
Q Consensus 158 ~~~~Sa~~~~~v~~~~~~l~~ 178 (210)
++++||+++.|+++++..|..
T Consensus 141 v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 141 VLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred EEEEECCCCccHHHHHhhhcc
Confidence 999999999999999988764
No 336
>PRK00098 GTPase RsgA; Reviewed
Probab=98.92 E-value=7.9e-09 Score=78.50 Aligned_cols=87 Identities=22% Similarity=0.143 Sum_probs=63.3
Q ss_pred cccCCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEE
Q 028305 81 FYRGADCCVLVYDVNVQKTFES-LQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYF 159 (210)
Q Consensus 81 ~~~~~d~vi~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
.+.++|.+++|+|+.++..... +..|+..+... ++|+++|+||+|+.+. .. ..++.....+..+ .+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~-------~ip~iIVlNK~DL~~~--~~-~~~~~~~~~~~~g-~~v~ 145 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN-------GIKPIIVLNKIDLLDD--LE-EARELLALYRAIG-YDVL 145 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC-------CCCEEEEEEhHHcCCC--HH-HHHHHHHHHHHCC-CeEE
Confidence 4688999999999988866544 45666555431 7799999999999632 22 1223344445555 7899
Q ss_pred EecCCCCCChHHHHHHHHH
Q 028305 160 ETSAKEDCNIDEAFLCVAE 178 (210)
Q Consensus 160 ~~Sa~~~~~v~~~~~~l~~ 178 (210)
++||+++.|++++++.+..
T Consensus 146 ~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 146 ELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred EEeCCCCccHHHHHhhccC
Confidence 9999999999999988753
No 337
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.4e-08 Score=77.05 Aligned_cols=155 Identities=19% Similarity=0.240 Sum_probs=95.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccc-----------------------eeeeEEEEEEEEe----------C
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKA-----------------------TIGADFVTKELQM----------D 57 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~----------~ 57 (210)
..++++|+|...+|||||+.-|..+......-. ..+.+-.-..+++ +
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 578999999999999999987775544311100 0011111111111 1
Q ss_pred CeEEEEEEEeCCCcccccccccccccC--CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCC
Q 028305 58 DKLVTLQIWDTAGQERFQSLGSAFYRG--ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDG 135 (210)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~--~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~ 135 (210)
.....+.++|.+|+.+|.......+.. .|..+++++++....+..-+.. ..+... ++|++++++|+|+.+
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHL-gl~~AL-------~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHL-GLIAAL-------NIPFFVLVTKMDLVD 317 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHH-HHHHHh-------CCCeEEEEEeecccc
Confidence 112358899999999988776555443 5899999999877665543322 222211 889999999999976
Q ss_pred CCC----------------------cccchHHHHHHHHHc---CCCcEEEecCCCCCChHHHH
Q 028305 136 GSS----------------------RVVPQKKALEWCAYR---GNIPYFETSAKEDCNIDEAF 173 (210)
Q Consensus 136 ~~~----------------------~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~ 173 (210)
... +....++.-..++.. +.++++.+|+..|+|++-+.
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 531 122333333333322 35779999999999987443
No 338
>PRK12288 GTPase RsgA; Reviewed
Probab=98.91 E-value=1.4e-08 Score=78.38 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=66.2
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEe
Q 028305 82 YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 82 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
..++|.+++|+++....++..+..|+..... .++|.++|+||+|+.+...... ........+..+ .+++++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~-------~~i~~VIVlNK~DL~~~~~~~~-~~~~~~~y~~~g-~~v~~v 188 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET-------LGIEPLIVLNKIDLLDDEGRAF-VNEQLDIYRNIG-YRVLMV 188 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh-------cCCCEEEEEECccCCCcHHHHH-HHHHHHHHHhCC-CeEEEE
Confidence 5679999999999888889889888765532 1679999999999975321111 122223334455 789999
Q ss_pred cCCCCCChHHHHHHHHHH
Q 028305 162 SAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~ 179 (210)
||+++.|++++++.|...
T Consensus 189 SA~tg~GideL~~~L~~k 206 (347)
T PRK12288 189 SSHTGEGLEELEAALTGR 206 (347)
T ss_pred eCCCCcCHHHHHHHHhhC
Confidence 999999999999998753
No 339
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.85 E-value=6.6e-09 Score=70.33 Aligned_cols=53 Identities=23% Similarity=0.287 Sum_probs=36.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCC-cccceeeeEEEEEEEEeCCeEEEEEEEeCCCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQ-QYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (210)
+++++|.+|+|||||+|++.+..... ...++.+.. ...+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKH--FQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccc--eEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999776532 122223222 23344443 4789999995
No 340
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.82 E-value=8.9e-09 Score=71.81 Aligned_cols=56 Identities=23% Similarity=0.401 Sum_probs=39.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcC-CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKF-SQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (210)
...++++|+|.||+|||||+|+|.+... .....++++.... .+..+. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~--~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQ--EVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceE--EEEeCC---CEEEEECcC
Confidence 3458999999999999999999997654 3344455544333 233322 478999998
No 341
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.82 E-value=2e-08 Score=78.20 Aligned_cols=99 Identities=21% Similarity=0.157 Sum_probs=68.9
Q ss_pred cccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC-cccchHHHHHH
Q 028305 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS-RVVPQKKALEW 149 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~-~~~~~~~~~~~ 149 (210)
.+++..+...+...++++++|+|+.+.. ..|...+.+... +.|+++|+||+|+.+... .....+.++++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-----~~piilV~NK~DLl~k~~~~~~~~~~l~~~ 119 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-----GNPVLLVGNKIDLLPKSVNLSKIKEWMKKR 119 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-----CCCEEEEEEchhhCCCCCCHHHHHHHHHHH
Confidence 4567777888888999999999997653 234444444432 569999999999965321 11222233344
Q ss_pred HHHcCC--CcEEEecCCCCCChHHHHHHHHHH
Q 028305 150 CAYRGN--IPYFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 150 ~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
++..+. ..++.+||++|.|++++++.+.+.
T Consensus 120 ~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 120 AKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 555552 258999999999999999999764
No 342
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=2.8e-08 Score=75.30 Aligned_cols=119 Identities=15% Similarity=0.186 Sum_probs=76.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcc-cceeeeEEEEEEEEeCCeE-----------------------------
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQY-KATIGADFVTKELQMDDKL----------------------------- 60 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------------------------- 60 (210)
...-|+++|+-..||||||+.|+...++... -+..+++.....+..+.+.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 4456999999999999999999988887432 2223334444444432221
Q ss_pred ----------EEEEEEeCCCcc-----------cccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC
Q 028305 61 ----------VTLQIWDTAGQE-----------RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEH 119 (210)
Q Consensus 61 ----------~~~~i~D~~g~~-----------~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~ 119 (210)
-.+.++||||.- +|.....=++..+|.++++||...-+--++....+..+..+
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~------ 210 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH------ 210 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC------
Confidence 148999999921 12233344567899999999976543333334444444332
Q ss_pred CCCCEEEEEecCCCCCC
Q 028305 120 EACPFVLLGNKIDTDGG 136 (210)
Q Consensus 120 ~~~p~ilv~~K~D~~~~ 136 (210)
.=.+-+|.||+|..+.
T Consensus 211 -EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 211 -EDKIRVVLNKADQVDT 226 (532)
T ss_pred -cceeEEEeccccccCH
Confidence 1257789999998654
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.78 E-value=2.5e-08 Score=68.75 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=36.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCC
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (210)
..++|+++|.||+|||||+|+|.+.... ....++.+... ..+.... .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVW--QYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeE--EEEEcCC---CEEEEECcC
Confidence 4678999999999999999999976543 22333333332 2222222 267889998
No 344
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.75 E-value=3.1e-08 Score=69.27 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=39.3
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (210)
...++++++|.+|+|||||+|++.+..+. ....++++... ..+.++ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~--~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGI--QWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeee--EEEEec---CCEEEEECCCC
Confidence 45589999999999999999999987653 22223333333 333333 34789999994
No 345
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.73 E-value=2.1e-08 Score=71.36 Aligned_cols=54 Identities=22% Similarity=0.389 Sum_probs=37.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcC---------CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKF---------SQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (210)
..+++++|.+|+|||||+|+|.+... .....++++.+.. .+..+. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLI--KIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeE--EEecCC---CCEEEeCcC
Confidence 35899999999999999999997432 2234444444443 333332 378999999
No 346
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=4.1e-07 Score=72.79 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=91.1
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
..+++|-|+|+||||+||||||++|...-.. +....+ .-....+.+....++++.+|.. .. ......+-+|.
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk-~ti~~i----~GPiTvvsgK~RRiTflEcp~D--l~-~miDvaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTK-QTIDEI----RGPITVVSGKTRRITFLECPSD--LH-QMIDVAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHH-hhhhcc----CCceEEeecceeEEEEEeChHH--HH-HHHhHHHhhhe
Confidence 4568999999999999999999988743211 111111 0011123456678999999942 22 23344567899
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCC-EEEEEecCCCCCCCCcccchHHHHH------HHHHcCCCcEEE
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACP-FVLLGNKIDTDGGSSRVVPQKKALE------WCAYRGNIPYFE 160 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K~D~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 160 (210)
|++.+|.+-.-..+.+ .+++.+..+ ++| ++-|++..|+.... .....++. +..-+....+|.
T Consensus 137 VlLlIdgnfGfEMETm-EFLnil~~H-------GmPrvlgV~ThlDlfk~~---stLr~~KKrlkhRfWtEiyqGaKlFy 205 (1077)
T COG5192 137 VLLLIDGNFGFEMETM-EFLNILISH-------GMPRVLGVVTHLDLFKNP---STLRSIKKRLKHRFWTEIYQGAKLFY 205 (1077)
T ss_pred eEEEeccccCceehHH-HHHHHHhhc-------CCCceEEEEeecccccCh---HHHHHHHHHHhhhHHHHHcCCceEEE
Confidence 9999998754333332 445555554 444 77899999996532 12222222 223334577888
Q ss_pred ecCC-CCCChHHHHHHHHHHH
Q 028305 161 TSAK-EDCNIDEAFLCVAEIA 180 (210)
Q Consensus 161 ~Sa~-~~~~v~~~~~~l~~~~ 180 (210)
+|.. +|.--+.-+-.|.+.+
T Consensus 206 lsgV~nGRYpDreilnLsRfi 226 (1077)
T COG5192 206 LSGVENGRYPDREILNLSRFI 226 (1077)
T ss_pred ecccccCCCCCHHHHHHHHHH
Confidence 8864 4555444444454443
No 347
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.72 E-value=7.4e-08 Score=66.41 Aligned_cols=92 Identities=12% Similarity=0.031 Sum_probs=57.9
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEE
Q 028305 80 AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYF 159 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
..++.+|++++|+|++++..-.. ..+...+... . .+.|+++|+||+|+.+. .........+.+... ..++
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~-~----~~~p~ilVlNKiDl~~~---~~~~~~~~~~~~~~~-~~~~ 73 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKE-K----PHKHLIFVLNKCDLVPT---WVTARWVKILSKEYP-TIAF 73 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC-HHHHHHHHhc-c----CCCCEEEEEEchhcCCH---HHHHHHHHHHhcCCc-EEEE
Confidence 34678999999999998732211 1222222221 1 15799999999999642 112222333322222 3368
Q ss_pred EecCCCCCChHHHHHHHHHHHH
Q 028305 160 ETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 160 ~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
.+||+++.|++++++.+.+.+.
T Consensus 74 ~iSa~~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 74 HASINNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred EeeccccccHHHHHHHHHHHHh
Confidence 8999999999999999977643
No 348
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.71 E-value=1.1e-07 Score=72.40 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=89.9
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC------------------CcccceeeeEEE--------------------E
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS------------------QQYKATIGADFV--------------------T 51 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------------~~~~~~~~~~~~--------------------~ 51 (210)
-..++|+|+|...+|||||+.-|..+... .......+.++. .
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 35789999999999999999665533322 011111111110 0
Q ss_pred EEEEeCCeEEEEEEEeCCCcccccccccccc--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEe
Q 028305 52 KELQMDDKLVTLQIWDTAGQERFQSLGSAFY--RGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGN 129 (210)
Q Consensus 52 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~ 129 (210)
..+. ++....+.|+|.+|+++|...+-..+ +..|..++++-.+...--.. ...+... ....+|+++|++
T Consensus 211 vkIc-e~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmT-KEHLgLA-------LaL~VPVfvVVT 281 (641)
T KOG0463|consen 211 VKIC-EDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMT-KEHLGLA-------LALHVPVFVVVT 281 (641)
T ss_pred eeec-cccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceecc-HHhhhhh-------hhhcCcEEEEEE
Confidence 1111 11123588999999998876553332 34577777776553211111 1111111 112789999999
Q ss_pred cCCCCCCCCcccchHHHHHHHHHcC-------------------------CCcEEEecCCCCCChHHHHHHH
Q 028305 130 KIDTDGGSSRVVPQKKALEWCAYRG-------------------------NIPYFETSAKEDCNIDEAFLCV 176 (210)
Q Consensus 130 K~D~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~Sa~~~~~v~~~~~~l 176 (210)
|+|+......+.....+..+.+..+ -+++|.+|..+|.|+.-+...|
T Consensus 282 KIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 282 KIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred eeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 9999875433344444444443321 2568999999999987555444
No 349
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.68 E-value=3e-07 Score=67.05 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=54.0
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhC--cCCCcc---cceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc------
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYN--KFSQQY---KATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL------ 77 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------ 77 (210)
..+..-|+|+|++++|||+|+|+|++. .+.... ..|.++-....... .+....+.++||+|.......
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhh
Confidence 356678999999999999999999988 554221 22222222221111 123467999999996543221
Q ss_pred ccccccC--CcEEEEEEECCCh
Q 028305 78 GSAFYRG--ADCCVLVYDVNVQ 97 (210)
Q Consensus 78 ~~~~~~~--~d~vi~v~d~~~~ 97 (210)
....+.. ++++||..+....
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHHhCEEEEeccCccc
Confidence 1222233 7888887776644
No 350
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1e-07 Score=78.17 Aligned_cols=120 Identities=21% Similarity=0.240 Sum_probs=82.4
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcC--C----------C--cccceeeeEEEEEEEEeCCeEEEEEEEeCCCc
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKF--S----------Q--QYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (210)
++......+++++-+..-|||||..+|+...- + + ....+.+++.....+..-...+.++++|+|||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh 82 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH 82 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence 34556788999999999999999999873221 1 1 11223344444444455445688999999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCC
Q 028305 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~ 133 (210)
.+|.+......+-+|++++.+|+...---....-..+.+.. +...++|+||+|.
T Consensus 83 vdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkidr 136 (887)
T KOG0467|consen 83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKIDR 136 (887)
T ss_pred cchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhhh
Confidence 99999999999999999999998764322221111111211 5578999999994
No 351
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.67 E-value=8.1e-08 Score=66.13 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=37.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (210)
....+++++|.+|+|||||++++.+.... ...++.+.......+..++ .+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 35678999999999999999999965432 2223333332222222322 589999998
No 352
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.66 E-value=1e-07 Score=72.16 Aligned_cols=58 Identities=19% Similarity=0.353 Sum_probs=41.2
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcC-CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKF-SQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (210)
...++++|+|.||+|||||+|+|.+... .....++.+.... .+..+. .+.++||||-.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEeCC---cEEEEECCCcC
Confidence 4568999999999999999999997664 3334445544432 333332 37899999953
No 353
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.65 E-value=8.3e-08 Score=74.05 Aligned_cols=83 Identities=18% Similarity=0.026 Sum_probs=58.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcC-CCcccceeeeEEEEEEEEeCCe---------------EEEEEEEeCCCccc---
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKF-SQQYKATIGADFVTKELQMDDK---------------LVTLQIWDTAGQER--- 73 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~--- 73 (210)
+++.++|.|++|||||.+.|.+... .....|..+.+.....+.+.+. ...+.+.|.||-..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998776 4333355545555555555432 23578889999332
Q ss_pred ----ccccccccccCCcEEEEEEECC
Q 028305 74 ----FQSLGSAFYRGADCCVLVYDVN 95 (210)
Q Consensus 74 ----~~~~~~~~~~~~d~vi~v~d~~ 95 (210)
........++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223344578899999999985
No 354
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.65 E-value=3.8e-06 Score=56.73 Aligned_cols=148 Identities=19% Similarity=0.256 Sum_probs=76.9
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCC-Cccc--------------c
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTA-GQER--------------F 74 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-g~~~--------------~ 74 (210)
...++|.+.|+||+||||++.++...--...+.- -.+....+.-++...-+.+.|+. |... |
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv---gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKV---GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCcee---eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 4578999999999999999999874322211111 12333444455555666666665 3110 0
Q ss_pred -------c----ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccch
Q 028305 75 -------Q----SLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQ 143 (210)
Q Consensus 75 -------~----~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~ 143 (210)
. ......++.+|++ ++|---|--+. ...+...+...+.. ..|++.++++.+..+
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElk-s~~f~~~ve~vl~~----~kpliatlHrrsr~P-------- 144 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVI--IIDEIGPMELK-SKKFREAVEEVLKS----GKPLIATLHRRSRHP-------- 144 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhc-cHHHHHHHHHHhcC----CCcEEEEEecccCCh--------
Confidence 0 1112223446744 45544332111 23445555554443 678888888776421
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 144 KKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
..+..+..+.+.++ .+.+|-+.++..+...+-
T Consensus 145 --~v~~ik~~~~v~v~----lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 145 --LVQRIKKLGGVYVF----LTPENRNRILNEILSVLK 176 (179)
T ss_pred --HHHHhhhcCCEEEE----EccchhhHHHHHHHHHhc
Confidence 11222333323333 444555577777776553
No 355
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.64 E-value=2.8e-07 Score=63.38 Aligned_cols=84 Identities=19% Similarity=0.026 Sum_probs=54.7
Q ss_pred cEEEEEEECCChhhHHHHHHHHH-HHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCC
Q 028305 86 DCCVLVYDVNVQKTFESLQNWRE-EFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK 164 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~~~~~-~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (210)
|++++|+|+.++.+.... ++. .... . .+.|+++|+||+|+.+. ....+....+... ....++.+||+
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~--~----~~~p~IiVlNK~Dl~~~---~~~~~~~~~~~~~-~~~~ii~vSa~ 68 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIK--E----KGKKLILVLNKADLVPK---EVLRKWLAYLRHS-YPTIPFKISAT 68 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHh--c----CCCCEEEEEechhcCCH---HHHHHHHHHHHhh-CCceEEEEecc
Confidence 689999999887554421 222 1111 1 16799999999999642 1111112223222 23678999999
Q ss_pred CCCChHHHHHHHHHHHH
Q 028305 165 EDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 165 ~~~~v~~~~~~l~~~~~ 181 (210)
+|.|++++++.+.+...
T Consensus 69 ~~~gi~~L~~~i~~~~~ 85 (155)
T cd01849 69 NGQGIEKKESAFTKQTN 85 (155)
T ss_pred CCcChhhHHHHHHHHhH
Confidence 99999999999987654
No 356
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.63 E-value=1.4e-07 Score=65.97 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=63.9
Q ss_pred CCCcc-cccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHH
Q 028305 68 TAGQE-RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKA 146 (210)
Q Consensus 68 ~~g~~-~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~ 146 (210)
.||+. +........++++|.+++|+|++++...... .+...+ . +.|+++|+||+|+.+. . . ....
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~----~-----~k~~ilVlNK~Dl~~~--~-~-~~~~ 67 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL----G-----NKPRIIVLNKADLADP--K-K-TKKW 67 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh----c-----CCCEEEEEehhhcCCh--H-H-HHHH
Confidence 35543 2344456678899999999999876432221 111111 1 4689999999999642 1 1 1112
Q ss_pred HHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 147 LEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 147 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
.+..+... ..++.+|++++.|++++.+.+.+.+.
T Consensus 68 ~~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 68 LKYFESKG-EKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred HHHHHhcC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 12223333 56899999999999999999988764
No 357
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1.2e-07 Score=75.99 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=80.2
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC------------------CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS------------------QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (210)
...-+|.+.-.-.+||||+-.+.+...-. ..... ++..........-..+.++++|||||
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~r--gITiqSAAt~~~w~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQR--GITIQSAATYFTWRDYRINIIDTPGH 114 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhc--CceeeeceeeeeeccceeEEecCCCc
Confidence 45678888889999999999987622111 00111 22222233333333678999999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC
Q 028305 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGS 137 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~ 137 (210)
-+|.-..+..++--|+.+++++....-.-... ..+.++.++ ++|.+.++||.|.....
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~ry-------~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQMKRY-------NVPRICFINKMDRMGAS 172 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhH-HHHHHHHhc-------CCCeEEEEehhhhcCCC
Confidence 99999999999999999999988754322222 233444444 88999999999986543
No 358
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.63 E-value=1.2e-07 Score=71.42 Aligned_cols=57 Identities=21% Similarity=0.409 Sum_probs=39.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (210)
...++++++|.||+|||||+|+|.+.... ....++++... ..+.... .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence 35689999999999999999999976533 23334443333 2333322 3789999996
No 359
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=2.9e-08 Score=73.40 Aligned_cols=179 Identities=18% Similarity=0.185 Sum_probs=110.9
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCc---CCCcccceeeeEEEEEEE---EeCCe----------------------
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNK---FSQQYKATIGADFVTKEL---QMDDK---------------------- 59 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~---~~~~~---------------------- 59 (210)
+.+.+++|.-+|+..-||||++.++.+-. |..+....+++...+... ..++.
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence 35789999999999999999998876332 111111111111110000 00000
Q ss_pred ----------EEEEEEEeCCCcccccccccccccCCcEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCCCCCEE
Q 028305 60 ----------LVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQ----KTFESLQNWREEFLKQADPGEHEACPFV 125 (210)
Q Consensus 60 ----------~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~~~~~p~i 125 (210)
-..+.+.|+||++-..........-.|++++++..+.+ ++-+.+.. -++.+. ..++
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~L--------khii 183 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMKL--------KHII 183 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhhh--------ceEE
Confidence 12477889999997776666666667888888876643 33333221 122211 2589
Q ss_pred EEEecCCCCCCCCcccchHHHHHHHHHcC--CCcEEEecCCCCCChHHHHHHHHHHHHhcccccccCCCCCcce
Q 028305 126 LLGNKIDTDGGSSRVVPQKKALEWCAYRG--NIPYFETSAKEDCNIDEAFLCVAEIALKNEHKDIYYQPQGISE 197 (210)
Q Consensus 126 lv~~K~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (210)
++-||.|+..+.......+.+..|.+... ..+++++||.-+.|++-+.+.+..++.-- .++...+|+-+..
T Consensus 184 ilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP-vRdf~s~prlIVI 256 (466)
T KOG0466|consen 184 ILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP-VRDFTSPPRLIVI 256 (466)
T ss_pred EEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC-ccccCCCCcEEEE
Confidence 99999999865444555666666765443 36899999999999999999888877543 3455555554433
No 360
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.3e-06 Score=71.21 Aligned_cols=119 Identities=21% Similarity=0.294 Sum_probs=69.5
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEE----------------------------------------
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADF---------------------------------------- 49 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---------------------------------------- 49 (210)
....||++.|..++||||++|+++.....+......+.-+
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4678999999999999999999885554322111110000
Q ss_pred ----EEEEEEeCC-e---EEEEEEEeCCCcc---cccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC
Q 028305 50 ----VTKELQMDD-K---LVTLQIWDTAGQE---RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGE 118 (210)
Q Consensus 50 ----~~~~~~~~~-~---~~~~~i~D~~g~~---~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~ 118 (210)
..+.+.-++ . .-.+.++|.||-+ ...+-.......+|++|+|.+..+..+.... +++....+.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~~----- 260 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSEE----- 260 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhcc-----
Confidence 000000000 0 0136778889833 3333345666789999999998876544432 333333221
Q ss_pred CCCCCEEEEEecCCCCCC
Q 028305 119 HEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 119 ~~~~p~ilv~~K~D~~~~ 136 (210)
++.++++.||+|....
T Consensus 261 --KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 261 --KPNIFILNNKWDASAS 276 (749)
T ss_pred --CCcEEEEechhhhhcc
Confidence 4457788889998654
No 361
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.61 E-value=3.6e-07 Score=81.24 Aligned_cols=113 Identities=22% Similarity=0.250 Sum_probs=66.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcCCCcc----cc--eeeeEEEEEEEEeCCeEEEEEEEeCCCccc--------ccccccc
Q 028305 15 VIVLGDSGVGKTSLMNQYVYNKFSQQY----KA--TIGADFVTKELQMDDKLVTLQIWDTAGQER--------FQSLGSA 80 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~ 80 (210)
.+|+|++|+||||++++- +-.++-.. .. +.+.+. .....+.++ ..++||+|.-. ....+..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCC---EEEEcCCCccccCCCcccccHHHHHH
Confidence 589999999999999875 33333111 00 111011 122223333 55889999221 1222333
Q ss_pred cc---------cCCcEEEEEEECCChh-----h----HHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 81 FY---------RGADCCVLVYDVNVQK-----T----FESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 81 ~~---------~~~d~vi~v~d~~~~~-----s----~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
++ +-.|+||+++|+.+-- . ...+...+.++...+.. .+||.+|+||+|+...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~----~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA----RFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC----CCCEEEEEecchhhcC
Confidence 32 2369999999987521 1 12334445555555444 8899999999998755
No 362
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.61 E-value=5.5e-07 Score=65.29 Aligned_cols=157 Identities=17% Similarity=0.062 Sum_probs=95.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc-------ccccccccccC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER-------FQSLGSAFYRG 84 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 84 (210)
..+|.++|.|.+||||++..+.+.........+++.........+.+ -++++.|.||..+ -........+.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeec
Confidence 35899999999999999999986544332222232333333344444 5688889999322 22334556778
Q ss_pred CcEEEEEEECCChhhHHHHHH-HHHH-------------------------------------HHHhcCC----------
Q 028305 85 ADCCVLVYDVNVQKTFESLQN-WREE-------------------------------------FLKQADP---------- 116 (210)
Q Consensus 85 ~d~vi~v~d~~~~~s~~~~~~-~~~~-------------------------------------l~~~~~~---------- 116 (210)
++.+++|.|+..|-+-..+.. -+.- +..+...
T Consensus 137 cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~Da 216 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDA 216 (358)
T ss_pred ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCc
Confidence 999999999886544332211 0000 0000000
Q ss_pred ----------CCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHH
Q 028305 117 ----------GEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 117 ----------~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
.....+|.+.+.||+|-..- ++..-. +.....+++||.++-|++++++.+-+.+
T Consensus 217 T~DdLIdvVegnr~yVp~iyvLNkIdsISi-------EELdii---~~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 217 TADDLIDVVEGNRIYVPCIYVLNKIDSISI-------EELDII---YTIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred chhhhhhhhccCceeeeeeeeecccceeee-------ecccee---eeccceeecccccccchHHHHHHHhhcc
Confidence 00014688888899886432 222111 2235689999999999999999888765
No 363
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.59 E-value=1.2e-07 Score=72.72 Aligned_cols=56 Identities=25% Similarity=0.411 Sum_probs=40.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (210)
...+++.|+|-||+|||||||+|.+.... ....|+. +.....+..+.. +.++||||
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~--Tk~~q~i~~~~~---i~LlDtPG 186 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGT--TKGIQWIKLDDG---IYLLDTPG 186 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCce--ecceEEEEcCCC---eEEecCCC
Confidence 34688999999999999999999977653 2333333 344444444443 88999999
No 364
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.58 E-value=2.3e-07 Score=69.63 Aligned_cols=86 Identities=20% Similarity=0.165 Sum_probs=63.9
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC---------------CeEEEEEEEeCCCcc--
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD---------------DKLVTLQIWDTAGQE-- 72 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~D~~g~~-- 72 (210)
...+++.+||.|++|||||.|.|..........|..+++.....+.+. .....++++|.+|.-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 457799999999999999999999887777777777777776655442 224579999998822
Q ss_pred -----cccccccccccCCcEEEEEEECC
Q 028305 73 -----RFQSLGSAFYRGADCCVLVYDVN 95 (210)
Q Consensus 73 -----~~~~~~~~~~~~~d~vi~v~d~~ 95 (210)
.+...-..-++.+|+++-|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 22333344467899999988865
No 365
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.58 E-value=1.5e-07 Score=64.77 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=38.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcC-CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKF-SQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (210)
....+++++|.+|+|||||+|.+.+... .....+.++..... ...+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence 4568899999999999999999997653 22333444444332 2222 2478899998
No 366
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=2.4e-07 Score=67.76 Aligned_cols=122 Identities=20% Similarity=0.302 Sum_probs=76.4
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcc----cceeeeEEEEEEEEeCCeEEEEEEEeCCCcccc-------
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQY----KATIGADFVTKELQMDDKLVTLQIWDTAGQERF------- 74 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------- 74 (210)
+....-.|+|+.+|..|-|||||+..|++..+...+ .+.+..........-.+..+++.+.||.|..+.
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Sy 115 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSY 115 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCccccc
Confidence 334556899999999999999999999988876433 333333333344445677889999999993321
Q ss_pred cccc-------ccc-------------c--cCCcEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCCCCCCEEEEEecC
Q 028305 75 QSLG-------SAF-------------Y--RGADCCVLVYDVNVQKTFESLQN-WREEFLKQADPGEHEACPFVLLGNKI 131 (210)
Q Consensus 75 ~~~~-------~~~-------------~--~~~d~vi~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~~~~p~ilv~~K~ 131 (210)
..+. +.| + ...++.+|.+..+.. ++..+.. ..+.+.+ ++.+|-|+.|.
T Consensus 116 k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Lds--------kVNIIPvIAKa 186 (406)
T KOG3859|consen 116 KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLDS--------KVNIIPVIAKA 186 (406)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHhh--------hhhhHHHHHHh
Confidence 1111 011 1 235788888877653 2333221 2333322 56788888999
Q ss_pred CCCCC
Q 028305 132 DTDGG 136 (210)
Q Consensus 132 D~~~~ 136 (210)
|....
T Consensus 187 DtisK 191 (406)
T KOG3859|consen 187 DTISK 191 (406)
T ss_pred hhhhH
Confidence 97654
No 367
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.55 E-value=9.2e-08 Score=65.35 Aligned_cols=60 Identities=27% Similarity=0.314 Sum_probs=32.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCC------CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFS------QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ 75 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (210)
-.++|+|+.|||||||+|.|...... .....+.-+......+...+. ..++||||..++.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 46899999999999999999976322 111111111112223333222 4678999966543
No 368
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.51 E-value=5.5e-07 Score=67.82 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=66.1
Q ss_pred CCCccc-ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHH
Q 028305 68 TAGQER-FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKA 146 (210)
Q Consensus 68 ~~g~~~-~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~ 146 (210)
.|||.. ........++.+|++++|+|+..+.+.... .....+ . +.|+++|+||+|+.+. ... ...
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l----~-----~kp~IiVlNK~DL~~~---~~~-~~~ 69 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR----G-----NKPRLIVLNKADLADP---AVT-KQW 69 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH----C-----CCCEEEEEEccccCCH---HHH-HHH
Confidence 366552 334456678899999999999876543321 111111 1 5699999999998642 111 111
Q ss_pred HHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHHHhc
Q 028305 147 LEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 147 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 183 (210)
....+..+ ..++.+|++++.|++++.+.+.+.+...
T Consensus 70 ~~~~~~~~-~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 70 LKYFEEKG-IKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred HHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 22223333 5789999999999999999998887554
No 369
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.46 E-value=6.5e-07 Score=60.54 Aligned_cols=77 Identities=23% Similarity=0.170 Sum_probs=50.3
Q ss_pred cccccCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCC
Q 028305 79 SAFYRGADCCVLVYDVNVQKTFE--SLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNI 156 (210)
Q Consensus 79 ~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
...+..+|++++|+|+.++.+.. .+..++... . .+.|+++|+||+|+.+. . ...+.....+..+ .
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~----~~k~~iivlNK~DL~~~---~-~~~~~~~~~~~~~-~ 72 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D----PRKKNILLLNKADLLTE---E-QRKAWAEYFKKEG-I 72 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c----CCCcEEEEEechhcCCH---H-HHHHHHHHHHhcC-C
Confidence 34577899999999999876543 233333222 1 16799999999998642 1 1223344445555 6
Q ss_pred cEEEecCCCCCC
Q 028305 157 PYFETSAKEDCN 168 (210)
Q Consensus 157 ~~~~~Sa~~~~~ 168 (210)
.++++||.++.+
T Consensus 73 ~ii~iSa~~~~~ 84 (141)
T cd01857 73 VVVFFSALKENA 84 (141)
T ss_pred eEEEEEecCCCc
Confidence 899999987653
No 370
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.45 E-value=2e-06 Score=67.98 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=62.0
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhh------CcCC----Cccc-----------ceeeeEEEEEEEEeC-----------
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVY------NKFS----QQYK-----------ATIGADFVTKELQMD----------- 57 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~~----~~~~-----------~~~~~~~~~~~~~~~----------- 57 (210)
..+.-|+++|++||||||++.+|.. .... +.+. ...+..+.......+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 3467899999999999999988751 1100 1100 001111111110001
Q ss_pred --CeEEEEEEEeCCCccccccc----cccc--ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEe
Q 028305 58 --DKLVTLQIWDTAGQERFQSL----GSAF--YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGN 129 (210)
Q Consensus 58 --~~~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~ 129 (210)
...+.+.++||+|....... ...+ ...++.+++|.|......... ....+... -.+.-+|+|
T Consensus 178 ~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~-------~~~~g~IlT 247 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS-------VDVGSVIIT 247 (429)
T ss_pred HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc-------cCCcEEEEE
Confidence 12467899999994322211 1111 234688999999875432222 12222221 126678899
Q ss_pred cCCCCC
Q 028305 130 KIDTDG 135 (210)
Q Consensus 130 K~D~~~ 135 (210)
|.|...
T Consensus 248 KlD~~a 253 (429)
T TIGR01425 248 KLDGHA 253 (429)
T ss_pred CccCCC
Confidence 999754
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.45 E-value=1.9e-06 Score=66.00 Aligned_cols=145 Identities=17% Similarity=0.221 Sum_probs=78.7
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCC----------Cccc-----------ceeeeEEEEEEEEe-------------
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFS----------QQYK-----------ATIGADFVTKELQM------------- 56 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~----------~~~~-----------~~~~~~~~~~~~~~------------- 56 (210)
..-.|+++|++|+||||++..|...-.. +.+. ...+..+.......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999887522110 0000 00111111110000
Q ss_pred CCeEEEEEEEeCCCccccccc----cccc--------ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCE
Q 028305 57 DDKLVTLQIWDTAGQERFQSL----GSAF--------YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPF 124 (210)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~----~~~~--------~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ 124 (210)
....+.+.++||||....... ...+ ....+.+++|.|.+... +.+.+ ...+.+.. .+.
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~~-------~~~ 262 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEAV-------GLT 262 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhhC-------CCC
Confidence 123357999999995432111 1111 12467899999998532 22222 12222211 155
Q ss_pred EEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHH
Q 028305 125 VLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFL 174 (210)
Q Consensus 125 ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 174 (210)
-+|.||.|.... .-.+...+...+ .++..++ +|++++++-.
T Consensus 263 giIlTKlD~t~~------~G~~l~~~~~~~-~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 263 GIILTKLDGTAK------GGVVFAIADELG-IPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred EEEEECCCCCCC------ccHHHHHHHHHC-CCEEEEe--CCCChhhCcc
Confidence 788999996532 233344445555 8888887 7888877643
No 372
>PRK14974 cell division protein FtsY; Provisional
Probab=98.41 E-value=2.3e-06 Score=65.77 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=53.8
Q ss_pred EEEEEEeCCCcccccc----ccccc--ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCC
Q 028305 61 VTLQIWDTAGQERFQS----LGSAF--YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTD 134 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~~----~~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~ 134 (210)
..+.++||+|...... ..... ....|.+++|.|....... + .....+.... + +--+|+||.|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~--~-~~a~~f~~~~------~-~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDA--V-EQAREFNEAV------G-IDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhH--H-HHHHHHHhcC------C-CCEEEEeeecCC
Confidence 4589999999543111 11111 1257899999998654321 1 1112222211 2 457888999986
Q ss_pred CCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHH
Q 028305 135 GGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFL 174 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 174 (210)
... -.+...+...+ .++.+++ +|.+++++..
T Consensus 293 ~~~------G~~ls~~~~~~-~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 293 AKG------GAALSIAYVIG-KPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCc------cHHHHHHHHHC-cCEEEEe--CCCChhhccc
Confidence 431 22333333444 7888876 7888877654
No 373
>PRK12288 GTPase RsgA; Reviewed
Probab=98.40 E-value=7e-07 Score=69.08 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhCc
Q 028305 15 VIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~~ 36 (210)
++|+|.+|+|||||+|+|.+..
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 7899999999999999999654
No 374
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.39 E-value=1.7e-06 Score=59.64 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (210)
++++|..|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999998855
No 375
>PRK13796 GTPase YqeH; Provisional
Probab=98.38 E-value=2.3e-06 Score=66.95 Aligned_cols=96 Identities=21% Similarity=0.169 Sum_probs=60.8
Q ss_pred cccccccccccCCc-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC-cccchHHHHHHH
Q 028305 73 RFQSLGSAFYRGAD-CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS-RVVPQKKALEWC 150 (210)
Q Consensus 73 ~~~~~~~~~~~~~d-~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~-~~~~~~~~~~~~ 150 (210)
++..... .+...+ .+++|+|+.+.. ..|...+.+... +.|+++|+||+|+.+... .....+....++
T Consensus 58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-----~kpviLViNK~DLl~~~~~~~~i~~~l~~~~ 126 (365)
T PRK13796 58 DFLKLLN-GIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-----NNPVLLVGNKADLLPKSVKKNKVKNWLRQEA 126 (365)
T ss_pred HHHHHHH-hhcccCcEEEEEEECccCC-----CchhHHHHHHhC-----CCCEEEEEEchhhCCCccCHHHHHHHHHHHH
Confidence 3444333 334455 999999998743 234444444332 569999999999965311 112222334445
Q ss_pred HHcCC--CcEEEecCCCCCChHHHHHHHHHH
Q 028305 151 AYRGN--IPYFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 151 ~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
+..+. ..++.+||++|.|++++++.+.+.
T Consensus 127 k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 127 KELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 55552 268999999999999999999764
No 376
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.38 E-value=1.5e-06 Score=65.81 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=66.8
Q ss_pred CCCccc-ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHH
Q 028305 68 TAGQER-FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKA 146 (210)
Q Consensus 68 ~~g~~~-~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~ 146 (210)
.|||+. ........+..+|++++|+|...+.+... .++..+. . +.|+++|+||+|+.+. .. .+..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-----~kp~iiVlNK~DL~~~---~~-~~~~ 72 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-----NKPRLLILNKSDLADP---EV-TKKW 72 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-----CCCEEEEEEchhcCCH---HH-HHHH
Confidence 477653 23445667889999999999987754332 1111211 1 4699999999998642 11 1222
Q ss_pred HHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHHHhc
Q 028305 147 LEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 147 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 183 (210)
..+.+..+ ..++.+|++++.|++++.+.+.+.+...
T Consensus 73 ~~~~~~~~-~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 73 IEYFEEQG-IKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred HHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 22223333 6789999999999999999998887554
No 377
>PRK01889 GTPase RsgA; Reviewed
Probab=98.37 E-value=3.4e-06 Score=65.71 Aligned_cols=84 Identities=15% Similarity=0.132 Sum_probs=58.3
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEe
Q 028305 82 YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 82 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
+.++|.+++|+++..+-....+..++..+... ++|.++|+||+|+.+. .. +....+.......+++.+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~-------~i~piIVLNK~DL~~~--~~---~~~~~~~~~~~g~~Vi~v 177 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES-------GAEPVIVLTKADLCED--AE---EKIAEVEALAPGVPVLAV 177 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc-------CCCEEEEEEChhcCCC--HH---HHHHHHHHhCCCCcEEEE
Confidence 57899999999997544444555655555433 6788999999999753 11 122222222233789999
Q ss_pred cCCCCCChHHHHHHHH
Q 028305 162 SAKEDCNIDEAFLCVA 177 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~ 177 (210)
|++++.|++++..++.
T Consensus 178 Sa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 178 SALDGEGLDVLAAWLS 193 (356)
T ss_pred ECCCCccHHHHHHHhh
Confidence 9999999999888874
No 378
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=2.1e-06 Score=66.05 Aligned_cols=161 Identities=15% Similarity=0.133 Sum_probs=100.7
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCC-------------------------------CcccceeeeEEEEEEEE
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFS-------------------------------QQYKATIGADFVTKELQ 55 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 55 (210)
..+...++++|+|...+||||+-..+....-. .....+.+.......+.
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 34578999999999999999987655311100 11222223333334444
Q ss_pred eCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hHHHHHH--HHHHHHHhcCCCCCCCCCEEEEEec
Q 028305 56 MDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQK---TFESLQN--WREEFLKQADPGEHEACPFVLLGNK 130 (210)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~~~~~--~~~~l~~~~~~~~~~~~p~ilv~~K 130 (210)
.. +-.+.+.|+||+..|-........++|..++|+++...+ .|+.-.+ -...+.+... -...|+++||
T Consensus 154 te--~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-----v~~lVv~vNK 226 (501)
T KOG0459|consen 154 TE--NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-----VKHLIVLINK 226 (501)
T ss_pred ec--ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-----cceEEEEEEe
Confidence 43 456889999999988888878888999999999886432 2222211 1223333322 3368899999
Q ss_pred CCCCCCCCc----ccchHHHHHHHHHcC-----CCcEEEecCCCCCChHHHHH
Q 028305 131 IDTDGGSSR----VVPQKKALEWCAYRG-----NIPYFETSAKEDCNIDEAFL 174 (210)
Q Consensus 131 ~D~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~~~~ 174 (210)
+|-....-. ....+.+..|++..+ ...++++|..+|.++.+...
T Consensus 227 MddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 227 MDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred ccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 997543222 223334444554333 35699999999999987654
No 379
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.35 E-value=3.9e-06 Score=62.92 Aligned_cols=96 Identities=17% Similarity=0.086 Sum_probs=55.4
Q ss_pred EEEEEEEeCCCcccccccc----c---cc-----ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEE
Q 028305 60 LVTLQIWDTAGQERFQSLG----S---AF-----YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLL 127 (210)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~----~---~~-----~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv 127 (210)
.+.+.++||||........ . .. ...+|.+++|+|.... .+.+. ....+.+.. + +.-+|
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~------~-~~g~I 223 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV------G-LTGII 223 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC------C-CCEEE
Confidence 3678999999954322111 0 11 1237999999999753 22222 223332221 1 46788
Q ss_pred EecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHH
Q 028305 128 GNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFL 174 (210)
Q Consensus 128 ~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 174 (210)
.||.|.... .-.+.......+ .++.+++ +|++++++-.
T Consensus 224 lTKlDe~~~------~G~~l~~~~~~~-~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 224 LTKLDGTAK------GGIILSIAYELK-LPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred EEccCCCCC------ccHHHHHHHHHC-cCEEEEe--CCCChHhCcc
Confidence 999997543 233334444455 7888886 7777776644
No 380
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.35 E-value=6.1e-06 Score=66.02 Aligned_cols=81 Identities=15% Similarity=0.266 Sum_probs=51.7
Q ss_pred EEEEEeCCC-------------cccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q 028305 62 TLQIWDTAG-------------QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLG 128 (210)
Q Consensus 62 ~~~i~D~~g-------------~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~ 128 (210)
.+.++|.|| .+....+...++.+.+++|+|+-= .|.+.-......+...+.+. +...|+|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~---GrRTIfVL 486 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPH---GRRTIFVL 486 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCC---CCeeEEEE
Confidence 578899999 223345557778899999999852 23333333444444444443 56799999
Q ss_pred ecCCCCCCCCcccchHHHHHHH
Q 028305 129 NKIDTDGGSSRVVPQKKALEWC 150 (210)
Q Consensus 129 ~K~D~~~~~~~~~~~~~~~~~~ 150 (210)
+|.|+.+. .......++++.
T Consensus 487 TKVDlAEk--nlA~PdRI~kIl 506 (980)
T KOG0447|consen 487 TKVDLAEK--NVASPSRIQQII 506 (980)
T ss_pred eecchhhh--ccCCHHHHHHHH
Confidence 99999764 233445555544
No 381
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=5.5e-07 Score=69.51 Aligned_cols=121 Identities=19% Similarity=0.224 Sum_probs=89.3
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCC----Cc------------ccceeeeEEEEEEEEeCCeEEEEEEEeCCCc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFS----QQ------------YKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (210)
...+..+|.++....+||||-..|++.-.-. .. .....++......++++=...++.++||||+
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence 3456778999999999999999987621110 00 0112244566666777777788999999999
Q ss_pred ccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 72 ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
-+|.-..+..++--|+++.|||.+..-....+.-|.+.- ..++|-++++||+|....
T Consensus 113 vdf~leverclrvldgavav~dasagve~qtltvwrqad--------k~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 113 VDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD--------KFKIPAHCFINKMDKLAA 169 (753)
T ss_pred ceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc--------ccCCchhhhhhhhhhhhh
Confidence 999999999999999999999998765555555554332 128899999999998643
No 382
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.33 E-value=1.1e-06 Score=64.98 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|.+|+|||||+|+|.+..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 68999999999999999999653
No 383
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.32 E-value=1.1e-06 Score=68.57 Aligned_cols=55 Identities=29% Similarity=0.438 Sum_probs=37.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcC------CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKF------SQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (210)
.+++|+|.+|+|||||+|+|+.... .....|+++.... .+..++ .+.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCC---CCEEEECCCCC
Confidence 4899999999999999999996432 2233444444433 333322 25699999954
No 384
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.30 E-value=4e-05 Score=59.84 Aligned_cols=163 Identities=16% Similarity=0.172 Sum_probs=94.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC----------------Ccccceeee-----EEE---EEEEEe-CCeEEEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS----------------QQYKATIGA-----DFV---TKELQM-DDKLVTLQ 64 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~-----~~~---~~~~~~-~~~~~~~~ 64 (210)
.-.+=|.||||.-+||||||.||...... +++..+.++ .+. -..+.+ ++..+++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 34567899999999999999999632211 122121111 111 112222 57778999
Q ss_pred EEeCCCcc--------c-----c-cccc---------------cccc--cCCcEEEEEEECCC----hhhHHH-HHHHHH
Q 028305 65 IWDTAGQE--------R-----F-QSLG---------------SAFY--RGADCCVLVYDVNV----QKTFES-LQNWRE 108 (210)
Q Consensus 65 i~D~~g~~--------~-----~-~~~~---------------~~~~--~~~d~vi~v~d~~~----~~s~~~-~~~~~~ 108 (210)
++|+-|-. + . ..-| ...+ +..=++++.-|-+- ++.+.. -.+...
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 99998810 0 0 0000 0111 12336677666542 233333 345566
Q ss_pred HHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 109 EFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 109 ~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
+|... +.|+++++|-.+-. .....+...++..+++ ++++++++.+- .-+++..-|.+.+++..-
T Consensus 175 ELk~i-------gKPFvillNs~~P~----s~et~~L~~eL~ekY~-vpVlpvnc~~l-~~~DI~~Il~~vLyEFPV 238 (492)
T PF09547_consen 175 ELKEI-------GKPFVILLNSTKPY----SEETQELAEELEEKYD-VPVLPVNCEQL-REEDITRILEEVLYEFPV 238 (492)
T ss_pred HHHHh-------CCCEEEEEeCCCCC----CHHHHHHHHHHHHHhC-CcEEEeehHHc-CHHHHHHHHHHHHhcCCc
Confidence 66654 77999999988754 3455667777778887 99999987542 345555555555555543
No 385
>PRK13796 GTPase YqeH; Provisional
Probab=98.28 E-value=1.4e-06 Score=68.05 Aligned_cols=55 Identities=27% Similarity=0.384 Sum_probs=36.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcC------CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKF------SQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (210)
.++.|+|.+|+|||||+|+|+.... .....|+++.+.. .+..++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~--~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI--EIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE--EEEcCCC---cEEEECCCcc
Confidence 4799999999999999999985421 1223444444433 3333332 4689999953
No 386
>PRK12289 GTPase RsgA; Reviewed
Probab=98.27 E-value=1.7e-06 Score=66.99 Aligned_cols=23 Identities=43% Similarity=0.683 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++|+|++|+|||||+|+|++..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 37999999999999999999654
No 387
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.24 E-value=1.9e-06 Score=64.36 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=36.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCC------CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFS------QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ 75 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (210)
..+++|+.|+|||||+|+|....-. .....+.-++.....+...+. -.++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence 5789999999999999999853221 111122222333444455322 2477999976544
No 388
>PRK13695 putative NTPase; Provisional
Probab=98.20 E-value=5.8e-05 Score=52.92 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
++|+++|++|+|||||++.+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998653
No 389
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.15 E-value=1.7e-06 Score=61.84 Aligned_cols=110 Identities=11% Similarity=-0.004 Sum_probs=57.5
Q ss_pred EEEEEEeCCCcccccccc------cccccCCcEEEEEEEC------CChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q 028305 61 VTLQIWDTAGQERFQSLG------SAFYRGADCCVLVYDV------NVQKTFESLQNWREEFLKQADPGEHEACPFVLLG 128 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~------~~~~~~~d~vi~v~d~------~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~ 128 (210)
....++|+|||-++.... ...++.-+.-+.++.+ ++|..|-.. .+..+..++.. ..|-|=|.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~--lL~sl~tMl~m----elphVNvl 170 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS--LLVSLATMLHM----ELPHVNVL 170 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH--HHHHHHHHHhh----cccchhhh
Confidence 457899999977644332 2223334433333333 445544332 22222222222 56888899
Q ss_pred ecCCCCCCC--------------------------Cc----ccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHH
Q 028305 129 NKIDTDGGS--------------------------SR----VVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCV 176 (210)
Q Consensus 129 ~K~D~~~~~--------------------------~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 176 (210)
.|+|+...- ++ ....+++..+.+.++-+.+......+.+.+-.+...|
T Consensus 171 SK~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~I 248 (290)
T KOG1533|consen 171 SKADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTI 248 (290)
T ss_pred hHhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHH
Confidence 999974321 01 2334555666666665666666655555554444443
No 390
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.14 E-value=5.9e-06 Score=62.61 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=35.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcc-c-----ceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQY-K-----ATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ 75 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (210)
-.++++|++|+|||||+|.|.+....... . .+..++.....+...+. ..++||||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 46999999999999999999865432111 1 11111122223333322 3589999976543
No 391
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.12 E-value=2.3e-06 Score=61.14 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=67.9
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEec
Q 028305 61 VTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNV----------QKTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K 130 (210)
+.+.+.|.+|+...+..|...+.++-.++++..++. ....+.....+..+..+ -=.++.++|++.||
T Consensus 199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~y---PWF~nssVIlFLNK 275 (359)
T KOG0085|consen 199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITY---PWFQNSSVILFLNK 275 (359)
T ss_pred heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcc---ccccCCceEEEech
Confidence 445566777766555555555555444444333321 11222222222222222 12237799999999
Q ss_pred CCCCCCC--------------CcccchHHHHHHHHHc----C-----CCcEEEecCCCCCChHHHHHHHHHHHHhcccc
Q 028305 131 IDTDGGS--------------SRVVPQKKALEWCAYR----G-----NIPYFETSAKEDCNIDEAFLCVAEIALKNEHK 186 (210)
Q Consensus 131 ~D~~~~~--------------~~~~~~~~~~~~~~~~----~-----~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 186 (210)
.|+.++. ......+..++|..+. + .+.-..++|.+.+|++-+|..+.+.+++.+.+
T Consensus 276 kDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~Lk 354 (359)
T KOG0085|consen 276 KDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK 354 (359)
T ss_pred hhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhhH
Confidence 9986531 1122333333333222 2 12235688899999999999999999887654
No 392
>PRK00098 GTPase RsgA; Reviewed
Probab=98.09 E-value=8.3e-06 Score=62.14 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKF 37 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~ 37 (210)
-.++++|++|+|||||+|.|.+...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 3589999999999999999986543
No 393
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.08 E-value=1.5e-05 Score=56.34 Aligned_cols=119 Identities=11% Similarity=0.107 Sum_probs=65.4
Q ss_pred EEEEEeCCCccccccccc---ccc---cC--C-cEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecC
Q 028305 62 TLQIWDTAGQERFQSLGS---AFY---RG--A-DCCVLVYDVNV-QKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131 (210)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~---~~~---~~--~-d~vi~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~ 131 (210)
.+.++|+|||.+.....+ ..+ ++ . =+++|+.|..= -++...+...+..+..+..- .+|-|=|.+|.
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~l----E~P~INvlsKM 174 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISL----EVPHINVLSKM 174 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHh----cCcchhhhhHH
Confidence 478899999876544332 111 11 1 25556655321 12333334444444333322 67999999999
Q ss_pred CCCCCCC---------------------------cccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHHHhcc
Q 028305 132 DTDGGSS---------------------------RVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 132 D~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
|+..... .......+..+...++-+.+++....+.+.++.++..|-.++.=.+
T Consensus 175 DLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~E 254 (273)
T KOG1534|consen 175 DLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYGE 254 (273)
T ss_pred HHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9854310 0011122233334455566888888888888888877766654443
No 394
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.07 E-value=2.4e-05 Score=54.36 Aligned_cols=22 Identities=32% Similarity=0.696 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
+|++.|+||+|||||+++++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998843
No 395
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=5.6e-05 Score=58.96 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.-.++|+|++|+||||++.+|..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999998874
No 396
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.04 E-value=0.00016 Score=55.52 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-.+|.|.-|||||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4578899999999999999854
No 397
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=0.00018 Score=58.35 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.-.|+|+|+.|+||||++.+|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988763
No 398
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.02 E-value=8.6e-06 Score=64.54 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=38.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCc
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (210)
.+.|.+||.||+||||+||+|.+.... ....|+-+-.+ .++.++. .+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHF--QTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHF--QTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCccee--EEEEcCC---CceecCCCCc
Confidence 699999999999999999999977643 33444444333 3333333 2677899993
No 399
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.00 E-value=7.2e-05 Score=59.28 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=72.5
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCC
Q 028305 61 VTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQK-------TFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~ 133 (210)
..+.++|.+|+...+..|..++.+++++|||+++++-+ ....+..-+..+...+......+.|++|+.||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 67899999999999999999999999999999987421 11112222223333223223337899999999996
Q ss_pred CCC----CC----------cc--cchHHHHHHHHHc-----------CCCcEEEecCCCCCChHHHHHHHHHH
Q 028305 134 DGG----SS----------RV--VPQKKALEWCAYR-----------GNIPYFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 134 ~~~----~~----------~~--~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
... .+ -. ...+.+..+.... ..+.+..++|.+..++..+|+.+.+.
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 211 00 00 1223333222111 12345677788888888888777654
No 400
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.00 E-value=8.2e-05 Score=53.10 Aligned_cols=84 Identities=20% Similarity=0.172 Sum_probs=45.9
Q ss_pred EEEEEEeCCCcccccc----ccccc--ccCCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCC
Q 028305 61 VTLQIWDTAGQERFQS----LGSAF--YRGADCCVLVYDVNVQKT-FESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~~----~~~~~--~~~~d~vi~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~ 133 (210)
..+.++||+|...... ....+ ....+-+++|.+.+.... ...+..++..+ + +-=++.||.|.
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~----------~-~~~lIlTKlDe 152 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF----------G-IDGLILTKLDE 152 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS----------S-TCEEEEESTTS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc----------c-CceEEEEeecC
Confidence 4589999999433221 11111 125678999999876432 22222222221 2 33567899997
Q ss_pred CCCCCcccchHHHHHHHHHcCCCcEEEec
Q 028305 134 DGGSSRVVPQKKALEWCAYRGNIPYFETS 162 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (210)
... .-.+...+...+ .++-.++
T Consensus 153 t~~------~G~~l~~~~~~~-~Pi~~it 174 (196)
T PF00448_consen 153 TAR------LGALLSLAYESG-LPISYIT 174 (196)
T ss_dssp SST------THHHHHHHHHHT-SEEEEEE
T ss_pred CCC------cccceeHHHHhC-CCeEEEE
Confidence 543 344555555566 6666654
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.98 E-value=5.6e-05 Score=52.89 Aligned_cols=66 Identities=21% Similarity=0.168 Sum_probs=36.6
Q ss_pred EEEEEEeCCCcccc----ccccccc--ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCC
Q 028305 61 VTLQIWDTAGQERF----QSLGSAF--YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTD 134 (210)
Q Consensus 61 ~~~~i~D~~g~~~~----~~~~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~ 134 (210)
..+.++|++|.... ......+ ....+.+++|++...... . ..+...+.+.. + ..-+|.||.|..
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~-~~~~~~~~~~~------~-~~~viltk~D~~ 152 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--A-VNQAKAFNEAL------G-ITGVILTKLDGD 152 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--H-HHHHHHHHhhC------C-CCEEEEECCcCC
Confidence 45788999996422 1111111 124799999999865432 1 22333332221 2 356777999976
Q ss_pred CC
Q 028305 135 GG 136 (210)
Q Consensus 135 ~~ 136 (210)
..
T Consensus 153 ~~ 154 (173)
T cd03115 153 AR 154 (173)
T ss_pred CC
Confidence 43
No 402
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=5.2e-05 Score=66.66 Aligned_cols=114 Identities=22% Similarity=0.222 Sum_probs=61.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcCC--Ccc-ccee-eeEEEEEEEEeCCeEEEEEEEeCCCccc--------cccccccc-
Q 028305 15 VIVLGDSGVGKTSLMNQYVYNKFS--QQY-KATI-GADFVTKELQMDDKLVTLQIWDTAGQER--------FQSLGSAF- 81 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~~~~--~~~-~~~~-~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~- 81 (210)
-+|+|+||+||||++..- +..|+ ... ..+. +.........+.++ -.++||.|.-. -...+..+
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTDE---AVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCcccccc---eEEEcCCcceecccCcchhhHHHHHHHH
Confidence 479999999999998642 22222 000 0000 00111122222232 56889998221 12222222
Q ss_pred --------ccCCcEEEEEEECCChh-----hH----HHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 82 --------YRGADCCVLVYDVNVQK-----TF----ESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 82 --------~~~~d~vi~v~d~~~~~-----s~----~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
.+-.|++|+.+|+.+-- .- ..+..-+.++...+.. ..|+.|++||.|+...
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~----~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA----RLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc----CCceEEEEeccccccc
Confidence 23469999999987521 11 1122234444444443 7899999999999764
No 403
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.95 E-value=0.00012 Score=54.88 Aligned_cols=88 Identities=20% Similarity=0.113 Sum_probs=62.8
Q ss_pred ccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 82 YRGADCCVLVYDVNVQK-TFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 82 ~~~~d~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
..+.|-+++|+.+.+|+ +...+.+++-..... ++.-++++||+|+.+.+.... ++........+ ++++.
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~-------gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~~~g-y~v~~ 146 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG-------GIEPVIVLNKIDLLDDEEAAV--KELLREYEDIG-YPVLF 146 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHHc-------CCcEEEEEEccccCcchHHHH--HHHHHHHHhCC-eeEEE
Confidence 44577788888888875 344455554444332 666778899999987643333 45566666677 99999
Q ss_pred ecCCCCCChHHHHHHHHHH
Q 028305 161 TSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~ 179 (210)
+|++++.+++++...+...
T Consensus 147 ~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 147 VSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ecCcCcccHHHHHHHhcCC
Confidence 9999999999998887654
No 404
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.94 E-value=7.4e-05 Score=50.89 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=35.7
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCC
Q 028305 60 LVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132 (210)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D 132 (210)
.+.+.++||+|... ....++..+|-++++...+-.+.+.-++ ..+. ...-++++||+|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~---------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIK---AGIM---------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhh---hhHh---------hhcCEEEEeCCC
Confidence 35789999988542 2234778899899888766322222211 1221 224588899987
No 405
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.91 E-value=0.00015 Score=57.94 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=20.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~ 33 (210)
..+..|+++|++|+||||.+..|.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHH
Confidence 357789999999999999998764
No 406
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.87 E-value=2.7e-05 Score=58.22 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=39.8
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCC------CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCc
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFS------QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ 71 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (210)
....+++.|+|-||+|||||+|++...... ....++.+...... +.+... -.+.+.||||-
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHR-PPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccC-CceEEecCCCc
Confidence 356889999999999999999988644332 23344454444332 223222 23788899993
No 407
>PRK10867 signal recognition particle protein; Provisional
Probab=97.87 E-value=0.00021 Score=56.97 Aligned_cols=86 Identities=23% Similarity=0.152 Sum_probs=45.7
Q ss_pred EEEEEEeCCCccccc----cccccc--ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCC
Q 028305 61 VTLQIWDTAGQERFQ----SLGSAF--YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTD 134 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~----~~~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~ 134 (210)
+.+.++||+|..... .....+ .-..+.+++|.|.... .........+.... + ..-+|.||.|..
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~------~-i~giIlTKlD~~ 253 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL------G-LTGVILTKLDGD 253 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC------C-CCEEEEeCccCc
Confidence 568999999943211 111111 1246788999997653 22223333333221 1 245777999964
Q ss_pred CCCCcccchHHHHHHHHHcCCCcEEEecC
Q 028305 135 GGSSRVVPQKKALEWCAYRGNIPYFETSA 163 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (210)
.. .-.+.......+ .|+.+++.
T Consensus 254 ~r------gG~alsi~~~~~-~PI~fig~ 275 (433)
T PRK10867 254 AR------GGAALSIRAVTG-KPIKFIGT 275 (433)
T ss_pred cc------ccHHHHHHHHHC-cCEEEEeC
Confidence 32 122444555555 66666543
No 408
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.86 E-value=0.00065 Score=52.17 Aligned_cols=89 Identities=17% Similarity=0.014 Sum_probs=47.7
Q ss_pred EEEEEEeCCCcccccccccccc--------cCCcEEEEEEECCChhhHHH-HH-HHHHHHHHhcCCCCCCCCCEEEEEec
Q 028305 61 VTLQIWDTAGQERFQSLGSAFY--------RGADCCVLVYDVNVQKTFES-LQ-NWREEFLKQADPGEHEACPFVLLGNK 130 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~--------~~~d~vi~v~d~~~~~s~~~-~~-~~~~~l~~~~~~~~~~~~p~ilv~~K 130 (210)
....++.+.|-.........+. -..|+++-|+|+.+-..... +. ....++ ...-++|+||
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi----------a~AD~ivlNK 154 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL----------AFADVIVLNK 154 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH----------HhCcEEEEec
Confidence 3456677777333322221111 13478999999876432211 11 222233 2245899999
Q ss_pred CCCCCCCCcccchHHHHHHHHHcC-CCcEEEecC
Q 028305 131 IDTDGGSSRVVPQKKALEWCAYRG-NIPYFETSA 163 (210)
Q Consensus 131 ~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 163 (210)
.|+.++. . .+..+...+..+ ..+++.++.
T Consensus 155 ~Dlv~~~---~-l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 155 TDLVDAE---E-LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred ccCCCHH---H-HHHHHHHHHHhCCCCeEEEccc
Confidence 9998752 1 344444444443 466777776
No 409
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.85 E-value=0.00025 Score=56.56 Aligned_cols=86 Identities=22% Similarity=0.160 Sum_probs=47.1
Q ss_pred EEEEEEeCCCccccccc----cccc--ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCC
Q 028305 61 VTLQIWDTAGQERFQSL----GSAF--YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTD 134 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~ 134 (210)
+.+.++||+|....... ...+ .-..+.+++|+|..... ....+...+.... + ..=+|.||.|..
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v------~-i~giIlTKlD~~ 252 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL------G-LTGVVLTKLDGD 252 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC------C-CCEEEEeCccCc
Confidence 56899999994322111 1111 22478899999986532 2333333443222 2 345778999964
Q ss_pred CCCCcccchHHHHHHHHHcCCCcEEEecC
Q 028305 135 GGSSRVVPQKKALEWCAYRGNIPYFETSA 163 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (210)
.. .-.+...+...+ .|+.++..
T Consensus 253 ~~------~G~~lsi~~~~~-~PI~fi~~ 274 (428)
T TIGR00959 253 AR------GGAALSVRSVTG-KPIKFIGV 274 (428)
T ss_pred cc------ccHHHHHHHHHC-cCEEEEeC
Confidence 32 123555555555 66666543
No 410
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.83 E-value=0.00012 Score=40.50 Aligned_cols=45 Identities=24% Similarity=0.219 Sum_probs=29.0
Q ss_pred cCCcEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCC
Q 028305 83 RGADCCVLVYDVNVQKT--FESLQNWREEFLKQADPGEHEACPFVLLGNKID 132 (210)
Q Consensus 83 ~~~d~vi~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D 132 (210)
+-.++++|++|++.... .+.-...+..+..... +.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-----~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-----NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-----TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-----CCCEEEEEeccC
Confidence 34689999999998654 4444566777776654 779999999998
No 411
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.74 E-value=0.00032 Score=47.25 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=59.4
Q ss_pred EEEcCCCCcHHHHHHHHhhCcC-CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEEC
Q 028305 16 IVLGDSGVGKTSLMNQYVYNKF-SQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDV 94 (210)
Q Consensus 16 ~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~ 94 (210)
..-|..|+|||++.-.+...-- .....-....+. ......+.+.++|+|+... ......+..+|.++++.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~-----~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~ 76 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADL-----GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTP 76 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC-----CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCC
Confidence 3456789999998766542110 000000011111 0011115689999998543 3334668889999999987
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCC
Q 028305 95 NVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTD 134 (210)
Q Consensus 95 ~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~ 134 (210)
+ ..++......+..+..... ..++.+|.|+.+..
T Consensus 77 ~-~~s~~~~~~~l~~l~~~~~-----~~~~~lVvN~~~~~ 110 (139)
T cd02038 77 E-PTSITDAYALIKKLAKQLR-----VLNFRVVVNRAESP 110 (139)
T ss_pred C-hhHHHHHHHHHHHHHHhcC-----CCCEEEEEeCCCCH
Confidence 6 3444444444444443221 44788999999743
No 412
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.73 E-value=3.1e-05 Score=59.69 Aligned_cols=56 Identities=21% Similarity=0.398 Sum_probs=40.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcC-CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKF-SQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (210)
...+++.|+|-|++||||+||+|..... .....|+.+ .....+..+. .+.+.|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT--~smqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT--RSMQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccch--hhhhheeccC---CceeccCCc
Confidence 6789999999999999999999986654 334444443 3334444444 378889999
No 413
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00021 Score=56.98 Aligned_cols=117 Identities=21% Similarity=0.227 Sum_probs=74.0
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCC----------------CcccceeeeEEEEEEE--------------EeCC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFS----------------QQYKATIGADFVTKEL--------------QMDD 58 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~--------------~~~~ 58 (210)
+....++-|+.+..-|||||..+|....-. ++...++++.-.-... ..++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 345667889999999999999988632211 1111111111111111 1144
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCC
Q 028305 59 KLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133 (210)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~ 133 (210)
....++++|.||+-+|.+.....++-.|+.+.|+|.-+.--...-.-..+.+.. .+.-+++.||.|.
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E--------RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE--------RIKPVLVMNKMDR 162 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh--------hccceEEeehhhH
Confidence 467899999999999999999999999999999998765322222222233332 2233567799996
No 414
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.70 E-value=1.9e-05 Score=59.23 Aligned_cols=108 Identities=14% Similarity=0.222 Sum_probs=63.2
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcc--------------
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE-------------- 72 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------------- 72 (210)
++......++++|++|.|||+++++|........ .... ..+.+....+|...
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 3455678899999999999999999997554321 1111 11234444444311
Q ss_pred ----------cccccccccccCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecC
Q 028305 73 ----------RFQSLGSAFYRGADCCVLVYDVNVQ---KTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131 (210)
Q Consensus 73 ----------~~~~~~~~~~~~~d~vi~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~ 131 (210)
.........++....=++++|--+. .+...-..+++.++..... .++|+|.||++-
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne---L~ipiV~vGt~~ 190 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE---LQIPIVGVGTRE 190 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc---cCCCeEEeccHH
Confidence 1112223445667888999997653 2333334444555444322 278999998763
No 415
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.69 E-value=3.7e-05 Score=50.39 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.|+|.|++||||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999885
No 416
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=6.6e-06 Score=59.77 Aligned_cols=153 Identities=16% Similarity=0.164 Sum_probs=87.8
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEe-CCeEEEEEEEeCCCcccccccccccccC---
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQM-DDKLVTLQIWDTAGQERFQSLGSAFYRG--- 84 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~--- 84 (210)
....+.|++.|. -|||++|++++...-.. ..++....+...-..- .+..--.++|+.+|......+...-+..
T Consensus 42 ~~~E~~I~~~Gn--~~~tt~I~~~FdR~e~~-~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l 118 (363)
T KOG3929|consen 42 EKFEFFIGSKGN--GGKTTIILRCFDRDEPP-KPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL 118 (363)
T ss_pred ccceeEEEEecC--CceeEeehhhcCcccCC-CCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence 356788999985 45699999988655432 2344444443332221 1233347899999976655554433322
Q ss_pred -CcEEEEEEECCChhh-HHHHHHHHHHHH--------------------------Hh-cC------CCCCCCCCEEEEEe
Q 028305 85 -ADCCVLVYDVNVQKT-FESLQNWREEFL--------------------------KQ-AD------PGEHEACPFVLLGN 129 (210)
Q Consensus 85 -~d~vi~v~d~~~~~s-~~~~~~~~~~l~--------------------------~~-~~------~~~~~~~p~ilv~~ 129 (210)
.=.+|++.|+++++. |..++..++.+. +. .. ....-.+|+++|+.
T Consensus 119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs 198 (363)
T KOG3929|consen 119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS 198 (363)
T ss_pred hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence 236899999999753 344444333321 10 00 01112579999999
Q ss_pred cCCCCCCC---CcccchHHHHHHHHHcCCCcEEEecCCC
Q 028305 130 KIDTDGGS---SRVVPQKKALEWCAYRGNIPYFETSAKE 165 (210)
Q Consensus 130 K~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (210)
|.|....- .+.....-.+.++..+| ...+..|++-
T Consensus 199 KYDvFq~FesekRkH~C~~LRf~Ah~yG-aaLlmfSskM 236 (363)
T KOG3929|consen 199 KYDVFQDFESEKRKHICKTLRFVAHYYG-AALLMFSSKM 236 (363)
T ss_pred chhhhccccHHHHHHHHHHHHHHHHHhh-hHHHHHHHhh
Confidence 99985432 23444455566666666 5555666653
No 417
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.00039 Score=50.60 Aligned_cols=114 Identities=20% Similarity=0.299 Sum_probs=66.4
Q ss_pred EEEEEEcCCCC--cHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeE----EEEEEEeCCCcccccccccccccCCc
Q 028305 13 LKVIVLGDSGV--GKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKL----VTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 13 ~~i~v~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
.-++|+|-.|+ ||.+|+++|....+.........+.+. ...++++. +.+.+..... ++.--.........
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~h--gwtid~kyysadi~lcishicd--e~~lpn~~~a~pl~ 80 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFH--GWTIDNKYYSADINLCISHICD--EKFLPNAEIAEPLQ 80 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeee--ceEecceeeecceeEEeecccc--hhccCCccccccee
Confidence 34789999999 999999999987776443333222222 22222222 2333332211 11111112223456
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
+++++||++....+..+..|...-.-... . -.+.++||.|...+
T Consensus 81 a~vmvfdlse~s~l~alqdwl~htdinsf-----d-illcignkvdrvph 124 (418)
T KOG4273|consen 81 AFVMVFDLSEKSGLDALQDWLPHTDINSF-----D-ILLCIGNKVDRVPH 124 (418)
T ss_pred eEEEEEeccchhhhHHHHhhccccccccc-----h-hheecccccccccc
Confidence 89999999998888888888654321111 1 35678999998653
No 418
>PRK08118 topology modulation protein; Reviewed
Probab=97.64 E-value=4.9e-05 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998743
No 419
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.62 E-value=4.8e-05 Score=51.36 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 028305 15 VIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~ 34 (210)
|+++|+||||||||++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999873
No 420
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00052 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~ 33 (210)
..-.++++|+.|+||||++.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35568999999999999998876
No 421
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.61 E-value=4.8e-05 Score=53.37 Aligned_cols=23 Identities=26% Similarity=0.706 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.+|+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999865
No 422
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00044 Score=58.64 Aligned_cols=154 Identities=14% Similarity=0.086 Sum_probs=77.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCC--C-cccceeeeEEEEE---------------EE-Ee-----------CCeEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFS--Q-QYKATIGADFVTK---------------EL-QM-----------DDKLVT 62 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~--~-~~~~~~~~~~~~~---------------~~-~~-----------~~~~~~ 62 (210)
--|+|+|+.|+||||.+.+|...-.. . ......+.+.+.. .+ .. .-....
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 46899999999999999988743210 0 0001111111100 00 00 011235
Q ss_pred EEEEeCCCcccc----ccccccc--ccCCcEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCC
Q 028305 63 LQIWDTAGQERF----QSLGSAF--YRGADCCVLVYDVNVQ-KTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDG 135 (210)
Q Consensus 63 ~~i~D~~g~~~~----~~~~~~~--~~~~d~vi~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~ 135 (210)
+.++||+|.... ....... ....+-+++|.|.+.. +.+..+. ..+..... --+-=+|+||.|...
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~-----~~i~glIlTKLDEt~ 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAG-----EDVDGCIITKLDEAT 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhccc-----CCCCEEEEeccCCCC
Confidence 899999993211 1111111 2235678899998743 3333332 22221100 013457799999764
Q ss_pred CCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh-HHHH----HHHHHHHHhc
Q 028305 136 GSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI-DEAF----LCVAEIALKN 183 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~~~----~~l~~~~~~~ 183 (210)
. .-.+..+....+ .++..++ +|.+| +++. +.+++.++..
T Consensus 338 ~------~G~iL~i~~~~~-lPI~yit--~GQ~VPdDL~~a~~~~lv~~ll~~ 381 (767)
T PRK14723 338 H------LGPALDTVIRHR-LPVHYVS--TGQKVPEHLELAQADELVDRAFAT 381 (767)
T ss_pred C------ccHHHHHHHHHC-CCeEEEe--cCCCChhhcccCCHHHHHHHHhcc
Confidence 3 344455555555 6776663 45555 4332 3455556553
No 423
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.58 E-value=0.00084 Score=41.72 Aligned_cols=69 Identities=23% Similarity=0.247 Sum_probs=43.6
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc-ccccccCCcEEEEEEE
Q 028305 15 VIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL-GSAFYRGADCCVLVYD 93 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~vi~v~d 93 (210)
+++.|..|+||||+...+...--...+ ....++ .+.++|+++....... .......+|.++++.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~----------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK----------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC----------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999887633211111 111111 5889999986543321 1345567899999988
Q ss_pred CCCh
Q 028305 94 VNVQ 97 (210)
Q Consensus 94 ~~~~ 97 (210)
.+..
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7643
No 424
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.58 E-value=8.6e-05 Score=53.58 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=24.7
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
|.++...-|+|+|++|||||||++.+.+.
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34667788999999999999999998753
No 425
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.57 E-value=0.0018 Score=50.42 Aligned_cols=21 Identities=43% Similarity=0.611 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (210)
.+|.|.-|||||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 678899999999999999854
No 426
>PRK07261 topology modulation protein; Provisional
Probab=97.57 E-value=6.3e-05 Score=52.55 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
+|+|+|++|||||||.+.|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 427
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.57 E-value=0.0015 Score=53.47 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=45.1
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-CEEEEEecCCCCCCCC--cc--cchH--HHHHHHHHcCCCcE
Q 028305 86 DCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEAC-PFVLLGNKIDTDGGSS--RV--VPQK--KALEWCAYRGNIPY 158 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~-p~ilv~~K~D~~~~~~--~~--~~~~--~~~~~~~~~~~~~~ 158 (210)
--+|+|=|+-+.-.-+. ..+...+.++.... .. |+|+|++=+|...... +. ...+ ...++....+ +..
T Consensus 133 ~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~~---~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~-i~~ 207 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRDT-SRFREALRQYLRSS---RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPG-ITR 207 (519)
T ss_pred ceEEEeeccccccchhH-HHHHHHHHHHHHcC---CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCC-ceE
Confidence 45677767655322222 34444444433322 33 9999999665432211 10 0111 1123333333 667
Q ss_pred EEecCCCCCChHHHHHHHHHHH
Q 028305 159 FETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 159 ~~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
+....-...-+..++..|+..-
T Consensus 208 I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 208 IKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred EEecCCCHHHHHHHHHHHHHHH
Confidence 7777666666666666666544
No 428
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.55 E-value=5.3e-05 Score=52.50 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999854
No 429
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=97.52 E-value=0.00029 Score=51.57 Aligned_cols=126 Identities=14% Similarity=0.098 Sum_probs=80.5
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCCh----------hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEe
Q 028305 60 LVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQ----------KTFESLQNWREEFLKQADPGEHEACPFVLLGN 129 (210)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~ 129 (210)
.+++..+|.+|+.+.+..|...+..+.++|+|...+.- ..+.+....++.++.... ...+.+|+++|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRw---L~tisvIlFLN 277 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRW---LRTISVILFLN 277 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhH---HhhhheeEEec
Confidence 36799999999999999999999999999999988741 122222222333332211 11568999999
Q ss_pred cCCCCCCC--------------------------Cccc----------chHHHHHHHHHcC----CCcEEEecCCCCCCh
Q 028305 130 KIDTDGGS--------------------------SRVV----------PQKKALEWCAYRG----NIPYFETSAKEDCNI 169 (210)
Q Consensus 130 K~D~~~~~--------------------------~~~~----------~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v 169 (210)
|.|+.... +... ..++........+ .+.+.++.|.+.+++
T Consensus 278 KqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenI 357 (379)
T KOG0099|consen 278 KQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI 357 (379)
T ss_pred HHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHH
Confidence 99974320 0000 1111111111111 133567889999999
Q ss_pred HHHHHHHHHHHHhcccccc
Q 028305 170 DEAFLCVAEIALKNEHKDI 188 (210)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~ 188 (210)
+.+|......+.+.+.++.
T Consensus 358 rrVFnDcrdiIqr~hlrqy 376 (379)
T KOG0099|consen 358 RRVFNDCRDIIQRMHLRQY 376 (379)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999998888876543
No 430
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.52 E-value=0.0015 Score=52.34 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=47.6
Q ss_pred EEEEEEeCCCccccc----cccccccc---CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCC
Q 028305 61 VTLQIWDTAGQERFQ----SLGSAFYR---GADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~----~~~~~~~~---~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~ 133 (210)
..+.++||+|..... .....++. ...-+.+|++.+.. ...+...+..+.. . + +--++.||.|.
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~----~---~-~~~vI~TKlDe 369 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR----L---P-LDGLIFTKLDE 369 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC----C---C-CCEEEEecccc
Confidence 568999999953321 11222233 23466778887542 1222232233211 0 2 23688999997
Q ss_pred CCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 134 DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
... ...+..++...+ .++..++ +|.+|
T Consensus 370 t~~------~G~i~~~~~~~~-lPv~yit--~Gq~V 396 (424)
T PRK05703 370 TSS------LGSILSLLIESG-LPISYLT--NGQRV 396 (424)
T ss_pred ccc------ccHHHHHHHHHC-CCEEEEe--CCCCC
Confidence 543 234555666666 6766664 34444
No 431
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.0022 Score=50.61 Aligned_cols=140 Identities=14% Similarity=0.047 Sum_probs=71.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcC-----CCccccee--------------------eeEEEEEEEE-------eCC
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKF-----SQQYKATI--------------------GADFVTKELQ-------MDD 58 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~-----~~~~~~~~--------------------~~~~~~~~~~-------~~~ 58 (210)
.+..|+++|++|+||||.+.+|...-. ........ +..+...... -.-
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 356899999999999999987753210 00000001 1111110000 011
Q ss_pred eEEEEEEEeCCCcccccc----cccccccC--Cc-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecC
Q 028305 59 KLVTLQIWDTAGQERFQS----LGSAFYRG--AD-CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131 (210)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~----~~~~~~~~--~d-~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~ 131 (210)
..+.+.++||+|...... ....++.. .+ -+++|.|.+.. ...+...+..... --+-=+++||.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~--------~~~~~~I~TKl 322 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP--------FSYKTVIFTKL 322 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC--------CCCCEEEEEec
Confidence 235689999999443211 11222222 23 68899998764 2223333333211 11456788999
Q ss_pred CCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 132 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
|.... .-.+..++...+ .++..+ .+|.+|
T Consensus 323 Det~~------~G~~l~~~~~~~-~Pi~yi--t~Gq~v 351 (388)
T PRK12723 323 DETTC------VGNLISLIYEMR-KEVSYV--TDGQIV 351 (388)
T ss_pred cCCCc------chHHHHHHHHHC-CCEEEE--eCCCCC
Confidence 97543 344445555555 666555 345555
No 432
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.49 E-value=0.00012 Score=42.94 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (210)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998854
No 433
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.49 E-value=0.00088 Score=54.15 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
--++|+|+.|+||||++..|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4689999999999999998873
No 434
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.48 E-value=0.0014 Score=51.37 Aligned_cols=157 Identities=16% Similarity=0.103 Sum_probs=77.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcC---CCcccceeeeEEEEEEE-----------------Ee----------CCeEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKF---SQQYKATIGADFVTKEL-----------------QM----------DDKLV 61 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~-----------------~~----------~~~~~ 61 (210)
.-.|+++||.|+||||-+-+|...-. .......++.|.+..-. .. .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56789999999999998876653222 11122222232221110 00 01134
Q ss_pred EEEEEeCCCcccccccc----cccccC--CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCC
Q 028305 62 TLQIWDTAGQERFQSLG----SAFYRG--ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDG 135 (210)
Q Consensus 62 ~~~i~D~~g~~~~~~~~----~~~~~~--~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~ 135 (210)
.+.++||.|...+.... ..++.. ..-+-+|++.+.. ...+...+..+.. . + .-=+++||.|...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~----~---~-i~~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL----F---P-IDGLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc----C---C-cceeEEEcccccC
Confidence 68999999955433222 222222 3456667777643 2333333333321 1 2 2346779999654
Q ss_pred CCCcccchHHHHHHHHHcCCCcEEEecC--CCCCChHHH-HHHHHHHHHhccc
Q 028305 136 GSSRVVPQKKALEWCAYRGNIPYFETSA--KEDCNIDEA-FLCVAEIALKNEH 185 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~~~~v~~~-~~~l~~~~~~~~~ 185 (210)
. .-.........+ .++-.++. .-.+++... -.+|++++.....
T Consensus 353 s------~G~~~s~~~e~~-~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~ 398 (407)
T COG1419 353 S------LGNLFSLMYETR-LPVSYVTNGQRVPEDIVVANPDYLVRRILGTFA 398 (407)
T ss_pred c------hhHHHHHHHHhC-CCeEEEeCCCCCCchhhhcChHHHHHHHhcccc
Confidence 3 344444555454 55544432 223333322 2455666555444
No 435
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.47 E-value=0.00083 Score=45.03 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.-.+++.|++|+|||+|++.+....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4469999999999999999988654
No 436
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.47 E-value=0.00014 Score=41.34 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
..+|.|+.|+|||||+.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998763
No 437
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.45 E-value=0.00015 Score=50.45 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.1
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
....-+.|+|++|||||||+.+++..
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 34557899999999999999999854
No 438
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00011 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++||.|||||||++.+-+-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 58999999999999999876433
No 439
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.43 E-value=0.00013 Score=53.44 Aligned_cols=27 Identities=30% Similarity=0.742 Sum_probs=23.6
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-+.+|+++|+|++|||||+|+..++..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999998844
No 440
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.41 E-value=5.1e-05 Score=58.60 Aligned_cols=60 Identities=20% Similarity=0.296 Sum_probs=0.0
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCC
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG 70 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (210)
+.....+-|.|+|.|++||||+||.|...... ...|-.+.+.....+..-.+ +.++|+||
T Consensus 302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVC-kvAPIpGETKVWQYItLmkr---IfLIDcPG 361 (572)
T KOG2423|consen 302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVC-KVAPIPGETKVWQYITLMKR---IFLIDCPG 361 (572)
T ss_pred ccCccceeeeeecCCCCchHHHHHHHhhcccc-cccCCCCcchHHHHHHHHhc---eeEecCCC
No 441
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.41 E-value=0.0012 Score=41.99 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=48.5
Q ss_pred EEEEc-CCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 028305 15 VIVLG-DSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYD 93 (210)
Q Consensus 15 i~v~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 93 (210)
|+|.| ..|+||||+...+...--. ...+. ..+..+.. +.+.++|+|+..... ....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~v-------l~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRV-------LLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcE-------EEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56777 4599999998776521111 11111 11122222 568999999865332 2356778999999987
Q ss_pred CCChhhHHHHHHHHH
Q 028305 94 VNVQKTFESLQNWRE 108 (210)
Q Consensus 94 ~~~~~s~~~~~~~~~ 108 (210)
.+ ..++.....+..
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 445555555544
No 442
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.38 E-value=0.00016 Score=47.87 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (210)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998854
No 443
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.38 E-value=0.00017 Score=52.76 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=21.5
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..+++|+|+|+|||||||+.+.|..
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998863
No 444
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.38 E-value=0.00066 Score=45.12 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
--|++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999998855
No 445
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.35 E-value=0.00018 Score=48.14 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999888643
No 446
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.34 E-value=0.00016 Score=52.26 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-|+++||.|||||||+|-+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3789999999999999987643
No 447
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.33 E-value=0.00022 Score=47.50 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFS 38 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~ 38 (210)
-.++++|++|+|||++++.+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999865544
No 448
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.33 E-value=0.0016 Score=47.17 Aligned_cols=63 Identities=24% Similarity=0.369 Sum_probs=38.1
Q ss_pred EEEEEeCC-CcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCC
Q 028305 62 TLQIWDTA-GQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTD 134 (210)
Q Consensus 62 ~~~i~D~~-g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~ 134 (210)
.+.++||- |-+.|. ....+.+|.+|+|.|.+- .++....+. ..+..... -.++.+|+||.|..
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri-~~L~~elg-----~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERI-KELAEELG-----IKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHHhC-----CceEEEEEeeccch
Confidence 46666663 333222 344678999999999874 344443332 33333222 25899999999954
No 449
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.31 E-value=0.00024 Score=47.83 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.|+|+|+.|||||||+..|++.-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998543
No 450
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.30 E-value=0.00029 Score=50.90 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.0
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
...+.|+|.|++|||||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999988753
No 451
>PF05729 NACHT: NACHT domain
Probab=97.29 E-value=0.00064 Score=46.84 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhCc
Q 028305 15 VIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~~ 36 (210)
++|.|++|+|||+++.++...-
T Consensus 3 l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999988543
No 452
>PRK06217 hypothetical protein; Validated
Probab=97.29 E-value=0.00023 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998844
No 453
>PRK14530 adenylate kinase; Provisional
Probab=97.29 E-value=0.00023 Score=51.67 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028305 14 KVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~ 33 (210)
+|+|+|+|||||||+.+.|.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999886
No 454
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.29 E-value=0.00022 Score=47.04 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (210)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 455
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.00022 Score=52.01 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhCc
Q 028305 15 VIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~~ 36 (210)
|+++|++|||||||++-+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999877443
No 456
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.28 E-value=0.00037 Score=50.25 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=23.2
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
+.....-|+|+|++|||||||++.|...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3446677889999999999999999754
No 457
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.27 E-value=0.00025 Score=47.62 Aligned_cols=21 Identities=33% Similarity=0.729 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (210)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999854
No 458
>PRK03839 putative kinase; Provisional
Probab=97.26 E-value=0.00023 Score=50.13 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
+|+|+|.|||||||+.++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988743
No 459
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.00022 Score=49.69 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
-.-+++.||.|+|||||+++|....
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3458899999999999999999655
No 460
>PLN02200 adenylate kinase family protein
Probab=97.25 E-value=0.00036 Score=51.29 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=22.2
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...++.|+|+|+|||||||+..+|..
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999999999998863
No 461
>PRK10646 ADP-binding protein; Provisional
Probab=97.25 E-value=0.0018 Score=44.05 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-|++-|+-|+|||||++.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 462
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.24 E-value=0.00067 Score=44.43 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.--|++-|+-|||||||++.+...
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999998743
No 463
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.24 E-value=0.0012 Score=47.39 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhCc
Q 028305 15 VIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~~ 36 (210)
|+|+|++||||||+++.+...-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887543
No 464
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.22 E-value=0.0045 Score=39.54 Aligned_cols=63 Identities=14% Similarity=0.026 Sum_probs=40.3
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEec
Q 028305 62 TLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130 (210)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K 130 (210)
.+.++|+|+.... .....+..+|.++++.+.+ ..+......+...+.+.... ....+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~---~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYS---LPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCC---CcCceEEEecC
Confidence 5889999986533 2344677899999998765 45566666666666554221 02256677764
No 465
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.21 E-value=0.00028 Score=49.92 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~ 33 (210)
..|+++|++||||||+++.|.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999987
No 466
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.21 E-value=0.0003 Score=49.46 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 467
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.20 E-value=0.00035 Score=46.93 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988743
No 468
>PRK08233 hypothetical protein; Provisional
Probab=97.20 E-value=0.00039 Score=48.91 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.+-|+|.|++|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999999998853
No 469
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.20 E-value=0.00034 Score=49.59 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.|+|+|++|||||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999654
No 470
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.20 E-value=0.0015 Score=50.28 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
..+|+|.|++|||||||++.|+..-
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998643
No 471
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.19 E-value=0.0019 Score=48.37 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
-|+|.|++||||||+++.++..-
T Consensus 82 lilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhh
Confidence 58999999999999999987543
No 472
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.18 E-value=0.00034 Score=50.09 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (210)
|+|.|++|||||||.+.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 473
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.17 E-value=0.00036 Score=44.42 Aligned_cols=21 Identities=43% Similarity=0.786 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~ 33 (210)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357999999999999999875
No 474
>PRK14531 adenylate kinase; Provisional
Probab=97.17 E-value=0.00036 Score=49.36 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.+|+++|+|||||||+.+.|..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 475
>PRK14532 adenylate kinase; Provisional
Probab=97.17 E-value=0.00032 Score=49.76 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
+|+++|+|||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998863
No 476
>PRK13949 shikimate kinase; Provisional
Probab=97.17 E-value=0.0004 Score=48.44 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
+|+|+|++||||||+.+.|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998763
No 477
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.17 E-value=0.0017 Score=50.50 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=23.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcC
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKF 37 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 37 (210)
...+|+|.|++|||||||++.|+..-.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 357899999999999999999986543
No 478
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.17 E-value=0.00034 Score=49.21 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999864
No 479
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.17 E-value=0.00039 Score=49.28 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.-.++++|++|||||||++.+.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999998854
No 480
>PRK01889 GTPase RsgA; Reviewed
Probab=97.14 E-value=0.00063 Score=53.23 Aligned_cols=24 Identities=42% Similarity=0.661 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
-+++++|.+|+|||||+|.|.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 378999999999999999998644
No 481
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.13 E-value=0.00038 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
-++++||.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999999875
No 482
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.12 E-value=0.0018 Score=50.20 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcC
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKF 37 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 37 (210)
...+|+|.|++|||||||++.|+..-.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999985443
No 483
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.11 E-value=0.0019 Score=43.46 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.--|++-|+-|+|||||.+.+..+-
T Consensus 25 g~Vv~L~GdLGAGKTtf~rgi~~~L 49 (149)
T COG0802 25 GDVVLLSGDLGAGKTTLVRGIAKGL 49 (149)
T ss_pred CCEEEEEcCCcCChHHHHHHHHHHc
Confidence 3458899999999999999987443
No 484
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.10 E-value=0.00042 Score=50.49 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (210)
|++.|++|||||||++.|...
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999988753
No 485
>PRK02496 adk adenylate kinase; Provisional
Probab=97.10 E-value=0.00051 Score=48.58 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.+|+|+|+|||||||+.+.|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 486
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.09 E-value=0.0005 Score=48.24 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=19.7
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~ 33 (210)
+--.++|+|+.|+|||||++.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34468999999999999999875
No 487
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.00045 Score=49.94 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
-|+++|+.|+|||||++.+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999998875
No 488
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.07 E-value=0.00064 Score=49.87 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=23.9
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCc
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
...++-|+|.|++|||||||++.|.+.-
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999888543
No 489
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.06 E-value=0.00043 Score=49.25 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
+|+|+|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988743
No 490
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.06 E-value=0.0005 Score=48.51 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 028305 15 VIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~ 34 (210)
|+++|+|||||||+.++|..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998874
No 491
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.06 E-value=0.0023 Score=49.24 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=22.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
..-+|+|+|++|||||||++.|+..
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999864
No 492
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.05 E-value=0.00067 Score=51.32 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=21.7
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHh
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~ 33 (210)
...++-|+|.|++|||||||++.+.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3567899999999999999998764
No 493
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.05 E-value=0.00039 Score=46.56 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
....+|+|.|-||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 5678999999999999999999873
No 494
>PTZ00301 uridine kinase; Provisional
Probab=97.04 E-value=0.00065 Score=49.05 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~ 33 (210)
+.+-|+|.|++|||||||.++|.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~ 24 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIV 24 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHH
Confidence 34779999999999999998775
No 495
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.04 E-value=0.00073 Score=47.89 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=21.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
...=|+|+||+|||||||+++|+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 34558999999999999999998643
No 496
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.04 E-value=0.00045 Score=49.99 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
+|+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 497
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.04 E-value=0.00057 Score=47.97 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68999999999999999888653
No 498
>PRK06547 hypothetical protein; Provisional
Probab=97.03 E-value=0.00078 Score=47.09 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=23.4
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
...+..|+|.|++|||||||.+.|...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 466788999999999999999998754
No 499
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.00055 Score=50.43 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
-++++||.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999986
No 500
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.02 E-value=0.00066 Score=47.29 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
=.++++|+.|+|||||+|-+.+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHh
Confidence 3689999999999999997664
Done!