Query 028305
Match_columns 210
No_of_seqs 154 out of 1721
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 15:28:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 3.5E-44 1.2E-48 258.5 17.8 195 9-210 10-208 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 1.3E-37 4.5E-42 223.5 22.3 173 8-187 4-176 (206)
3 1vg8_A RAS-related protein RAB 100.0 6.8E-38 2.3E-42 225.0 20.8 200 8-210 4-207 (207)
4 2bov_A RAla, RAS-related prote 100.0 7.3E-36 2.5E-40 214.2 20.0 170 9-185 11-180 (206)
5 3cpj_B GTP-binding protein YPT 100.0 9.6E-36 3.3E-40 216.3 19.7 175 8-189 9-183 (223)
6 2fu5_C RAS-related protein RAB 100.0 9.3E-36 3.2E-40 209.9 18.5 172 9-187 5-176 (183)
7 3tw8_B RAS-related protein RAB 100.0 3.1E-35 1.1E-39 206.7 20.7 174 5-186 2-175 (181)
8 2j0v_A RAC-like GTP-binding pr 100.0 1.5E-35 5.1E-40 213.7 18.7 177 6-188 3-186 (212)
9 3tkl_A RAS-related protein RAB 100.0 1.4E-34 4.8E-39 206.0 22.8 173 6-185 10-182 (196)
10 2bme_A RAB4A, RAS-related prot 100.0 7.3E-35 2.5E-39 205.8 21.1 175 7-188 5-179 (186)
11 2hup_A RAS-related protein RAB 100.0 3.8E-35 1.3E-39 209.9 19.7 173 7-185 24-196 (201)
12 2ew1_A RAS-related protein RAB 100.0 7E-35 2.4E-39 208.4 21.0 170 9-185 23-192 (201)
13 2efe_B Small GTP-binding prote 100.0 7.2E-35 2.5E-39 204.9 20.6 176 3-185 3-178 (181)
14 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.9E-34 9.8E-39 201.2 23.3 172 9-183 4-175 (177)
15 2a5j_A RAS-related protein RAB 100.0 8E-35 2.7E-39 206.6 20.6 172 8-186 17-188 (191)
16 3t5g_A GTP-binding protein RHE 100.0 1.4E-34 4.7E-39 203.6 21.2 171 8-185 2-172 (181)
17 3reg_A RHO-like small GTPase; 100.0 2.7E-34 9.1E-39 204.4 22.4 172 8-185 19-191 (194)
18 1ky3_A GTP-binding protein YPT 100.0 8.7E-35 3E-39 204.6 19.1 177 8-185 4-181 (182)
19 2gf9_A RAS-related protein RAB 100.0 4E-34 1.4E-38 202.7 22.1 168 9-183 19-186 (189)
20 1z08_A RAS-related protein RAB 100.0 1.2E-34 4.2E-39 201.7 19.1 167 9-182 3-169 (170)
21 2oil_A CATX-8, RAS-related pro 100.0 1.8E-34 6.3E-39 205.0 20.3 173 6-185 19-191 (193)
22 2g6b_A RAS-related protein RAB 100.0 5.2E-34 1.8E-38 200.3 22.2 172 7-185 5-177 (180)
23 3kkq_A RAS-related protein M-R 100.0 4.5E-34 1.5E-38 201.3 21.8 169 7-182 13-182 (183)
24 3ihw_A Centg3; RAS, centaurin, 100.0 3E-34 1E-38 202.5 20.8 170 6-185 14-183 (184)
25 1zbd_A Rabphilin-3A; G protein 100.0 4.3E-34 1.5E-38 204.7 21.8 172 8-186 4-175 (203)
26 2o52_A RAS-related protein RAB 100.0 1.3E-34 4.5E-39 207.0 18.6 172 9-187 22-193 (200)
27 1z0f_A RAB14, member RAS oncog 100.0 3.2E-34 1.1E-38 201.1 20.0 169 7-182 10-178 (179)
28 1g16_A RAS-related protein SEC 100.0 3.4E-34 1.2E-38 199.4 19.9 166 11-184 2-167 (170)
29 1r2q_A RAS-related protein RAB 100.0 2.4E-34 8.1E-39 200.1 19.0 166 9-181 3-168 (170)
30 2iwr_A Centaurin gamma 1; ANK 100.0 1.9E-34 6.6E-39 202.3 18.5 172 7-186 2-173 (178)
31 2il1_A RAB12; G-protein, GDP, 100.0 1.6E-34 5.5E-39 205.2 18.0 170 8-183 22-191 (192)
32 2fn4_A P23, RAS-related protei 100.0 5.2E-34 1.8E-38 200.4 20.4 172 7-185 4-175 (181)
33 1z2a_A RAS-related protein RAB 100.0 4.4E-34 1.5E-38 198.4 19.0 165 10-182 3-167 (168)
34 1x3s_A RAS-related protein RAB 100.0 1.1E-33 3.9E-38 201.0 21.5 171 8-185 11-181 (195)
35 2gf0_A GTP-binding protein DI- 100.0 2.2E-34 7.4E-39 205.5 17.7 170 9-185 5-174 (199)
36 3dz8_A RAS-related protein RAB 100.0 5.1E-35 1.7E-39 207.6 14.3 172 7-185 18-189 (191)
37 1z0j_A RAB-22, RAS-related pro 100.0 8.9E-34 3E-38 197.3 20.3 166 9-181 3-168 (170)
38 2y8e_A RAB-protein 6, GH09086P 100.0 3.6E-34 1.2E-38 200.8 18.4 167 9-182 11-177 (179)
39 1ek0_A Protein (GTP-binding pr 100.0 5.6E-34 1.9E-38 198.2 19.0 165 11-180 2-167 (170)
40 3cbq_A GTP-binding protein REM 100.0 4E-34 1.4E-38 203.7 18.5 173 7-185 18-191 (195)
41 2hxs_A RAB-26, RAS-related pro 100.0 2.2E-34 7.6E-39 201.9 16.7 173 9-185 3-176 (178)
42 4dsu_A GTPase KRAS, isoform 2B 100.0 7.8E-34 2.7E-38 200.9 19.6 169 10-186 2-170 (189)
43 2fg5_A RAB-22B, RAS-related pr 100.0 4.4E-34 1.5E-38 203.0 18.3 169 8-183 19-187 (192)
44 3q3j_B RHO-related GTP-binding 100.0 6.1E-34 2.1E-38 205.6 19.1 173 7-185 22-206 (214)
45 2p5s_A RAS and EF-hand domain 100.0 3.2E-34 1.1E-38 204.8 17.5 174 4-182 20-197 (199)
46 3oes_A GTPase rhebl1; small GT 100.0 4E-34 1.4E-38 204.6 17.9 173 6-185 18-190 (201)
47 3bc1_A RAS-related protein RAB 100.0 1.5E-33 5E-38 200.3 20.4 173 8-186 7-189 (195)
48 3q85_A GTP-binding protein REM 100.0 1.2E-33 4E-38 196.6 19.2 166 12-183 2-168 (169)
49 2q3h_A RAS homolog gene family 100.0 1.9E-33 6.4E-38 201.1 20.6 174 7-186 15-199 (201)
50 3c5c_A RAS-like protein 12; GD 100.0 1.3E-33 4.4E-38 199.8 18.9 170 7-182 16-186 (187)
51 3clv_A RAB5 protein, putative; 100.0 3.6E-33 1.2E-37 199.9 21.3 168 7-184 2-206 (208)
52 1z06_A RAS-related protein RAB 100.0 1.5E-33 5E-38 199.8 19.0 168 9-182 17-188 (189)
53 1c1y_A RAS-related protein RAP 100.0 1.9E-33 6.4E-38 195.1 18.7 165 11-181 2-166 (167)
54 2atx_A Small GTP binding prote 100.0 4.5E-33 1.5E-37 198.0 21.1 169 8-182 14-193 (194)
55 2nzj_A GTP-binding protein REM 100.0 2.9E-33 1E-37 195.6 19.6 169 10-185 2-172 (175)
56 3cph_A RAS-related protein SEC 100.0 5.3E-33 1.8E-37 200.3 21.5 169 9-185 17-185 (213)
57 1gwn_A RHO-related GTP-binding 100.0 2.1E-33 7.3E-38 201.3 19.2 170 7-182 23-204 (205)
58 2j1l_A RHO-related GTP-binding 100.0 2.5E-33 8.4E-38 202.4 19.4 171 9-185 31-212 (214)
59 1m7b_A RND3/RHOE small GTP-bin 100.0 2.7E-33 9.3E-38 197.6 19.2 168 9-182 4-183 (184)
60 2atv_A RERG, RAS-like estrogen 100.0 3.2E-33 1.1E-37 199.1 19.0 172 6-185 22-194 (196)
61 1mh1_A RAC1; GTP-binding, GTPa 100.0 6.3E-33 2.1E-37 195.7 19.4 170 10-185 3-183 (186)
62 2f7s_A C25KG, RAS-related prot 100.0 1.2E-33 4.2E-38 204.3 16.1 172 8-185 21-202 (217)
63 3q72_A GTP-binding protein RAD 100.0 6.3E-33 2.1E-37 192.4 19.0 164 12-183 2-165 (166)
64 1u8z_A RAS-related protein RAL 100.0 7.9E-33 2.7E-37 191.9 19.5 165 11-182 3-167 (168)
65 2a9k_A RAS-related protein RAL 100.0 7.5E-33 2.6E-37 195.4 19.5 170 9-185 15-184 (187)
66 2g3y_A GTP-binding protein GEM 100.0 6.5E-33 2.2E-37 199.1 18.9 171 8-185 33-206 (211)
67 1kao_A RAP2A; GTP-binding prot 100.0 6.4E-33 2.2E-37 192.2 18.0 165 11-182 2-166 (167)
68 2yc2_C IFT27, small RAB-relate 100.0 1.1E-33 3.7E-38 203.1 14.0 172 10-185 18-195 (208)
69 2gco_A H9, RHO-related GTP-bin 100.0 2.2E-32 7.4E-37 195.6 20.3 167 10-182 23-200 (201)
70 3con_A GTPase NRAS; structural 100.0 7.9E-32 2.7E-36 190.9 22.6 170 8-185 17-186 (190)
71 2fv8_A H6, RHO-related GTP-bin 100.0 3.5E-32 1.2E-36 195.4 20.6 171 8-184 21-202 (207)
72 4gzl_A RAS-related C3 botulinu 100.0 1.2E-32 4.2E-37 197.3 17.9 168 7-180 25-203 (204)
73 3bwd_D RAC-like GTP-binding pr 100.0 1.7E-33 5.7E-38 198.1 12.8 169 7-181 3-180 (182)
74 4djt_A GTP-binding nuclear pro 100.0 1.5E-32 5.1E-37 198.8 18.0 173 8-187 7-180 (218)
75 3gj0_A GTP-binding nuclear pro 100.0 6.4E-33 2.2E-37 201.1 15.8 172 6-187 9-180 (221)
76 3t1o_A Gliding protein MGLA; G 100.0 2.1E-33 7.1E-38 200.0 12.8 174 2-185 4-195 (198)
77 3l0i_B RAS-related protein RAB 100.0 8.9E-35 3E-39 207.7 5.5 170 7-183 28-197 (199)
78 2ce2_X GTPase HRAS; signaling 100.0 2.4E-31 8.1E-36 184.1 21.1 164 11-182 2-165 (166)
79 2erx_A GTP-binding protein DI- 100.0 3.1E-32 1E-36 189.7 16.3 166 11-182 2-167 (172)
80 2cjw_A GTP-binding protein GEM 100.0 3.3E-31 1.1E-35 188.2 19.2 168 10-184 4-174 (192)
81 4bas_A ADP-ribosylation factor 100.0 3.7E-31 1.3E-35 188.7 19.2 175 6-185 11-192 (199)
82 1zd9_A ADP-ribosylation factor 100.0 2.6E-31 9E-36 188.0 13.5 164 9-183 19-186 (188)
83 1upt_A ARL1, ADP-ribosylation 100.0 1.3E-30 4.3E-35 181.5 16.6 165 10-183 5-170 (171)
84 2f9l_A RAB11B, member RAS onco 100.0 1E-29 3.4E-34 181.5 21.1 169 10-185 3-171 (199)
85 1ksh_A ARF-like protein 2; sma 100.0 2.2E-30 7.6E-35 182.9 16.7 162 10-183 16-181 (186)
86 1zj6_A ADP-ribosylation factor 100.0 7.4E-31 2.5E-35 185.5 13.6 165 9-185 13-181 (187)
87 1m2o_B GTP-binding protein SAR 100.0 3.9E-30 1.3E-34 182.3 16.9 158 10-179 21-189 (190)
88 2b6h_A ADP-ribosylation factor 100.0 1.1E-30 3.7E-35 185.5 13.8 163 8-182 25-191 (192)
89 1f6b_A SAR1; gtpases, N-termin 100.0 1.8E-30 6.2E-35 185.2 14.9 158 10-179 23-196 (198)
90 2h57_A ADP-ribosylation factor 100.0 6.2E-30 2.1E-34 181.2 17.3 165 9-182 18-187 (190)
91 1r8s_A ADP-ribosylation factor 100.0 7.3E-31 2.5E-35 181.6 12.2 158 13-182 1-162 (164)
92 1fzq_A ADP-ribosylation factor 100.0 9.7E-31 3.3E-35 184.1 12.9 162 10-183 14-179 (181)
93 2zej_A Dardarin, leucine-rich 100.0 3.6E-31 1.2E-35 186.7 10.6 167 12-186 2-182 (184)
94 1oix_A RAS-related protein RAB 100.0 4.9E-29 1.7E-33 176.8 20.3 165 9-180 26-190 (191)
95 2h17_A ADP-ribosylation factor 100.0 1.4E-30 4.7E-35 183.2 11.7 160 8-179 17-180 (181)
96 2wkq_A NPH1-1, RAS-related C3 100.0 2.5E-29 8.5E-34 192.6 19.6 167 10-182 153-330 (332)
97 2x77_A ADP-ribosylation factor 100.0 4.2E-30 1.4E-34 181.9 13.5 162 10-184 20-186 (189)
98 3th5_A RAS-related C3 botulinu 99.9 1.2E-32 4E-37 197.4 0.0 169 7-181 25-204 (204)
99 1moz_A ARL1, ADP-ribosylation 100.0 2.1E-30 7.3E-35 182.4 11.1 162 10-183 16-181 (183)
100 3llu_A RAS-related GTP-binding 100.0 5.4E-30 1.9E-34 182.4 11.3 166 7-180 15-195 (196)
101 2lkc_A Translation initiation 100.0 7.6E-29 2.6E-33 173.6 14.0 163 9-186 5-175 (178)
102 2fh5_B SR-beta, signal recogni 100.0 1.2E-28 4.1E-33 177.7 15.3 167 9-179 4-213 (214)
103 3c5h_A Glucocorticoid receptor 100.0 1.1E-29 3.8E-34 187.7 8.6 167 7-181 14-254 (255)
104 3r7w_A Gtpase1, GTP-binding pr 100.0 1.1E-28 3.6E-33 186.9 13.0 166 11-182 2-181 (307)
105 2wji_A Ferrous iron transport 100.0 2.2E-28 7.7E-33 169.5 12.9 153 12-180 3-163 (165)
106 3o47_A ADP-ribosylation factor 100.0 8.8E-29 3E-33 188.9 11.7 162 10-183 163-328 (329)
107 2qu8_A Putative nucleolar GTP- 100.0 1.7E-27 5.7E-32 173.4 16.4 167 10-185 27-208 (228)
108 1svi_A GTP-binding protein YSX 100.0 3E-28 1E-32 173.1 11.9 164 7-181 18-194 (195)
109 3pqc_A Probable GTP-binding pr 100.0 1.7E-27 5.7E-32 169.1 13.3 161 8-182 19-194 (195)
110 3lvq_E ARF-GAP with SH3 domain 100.0 1.2E-27 4.1E-32 192.5 13.4 164 10-185 320-487 (497)
111 3iev_A GTP-binding protein ERA 99.9 1.2E-26 4.1E-31 175.7 17.7 168 7-184 5-184 (308)
112 3a1s_A Iron(II) transport prot 99.9 5.4E-27 1.8E-31 173.3 13.8 156 10-181 3-166 (258)
113 2cxx_A Probable GTP-binding pr 99.9 1E-27 3.6E-32 169.5 9.6 160 13-186 2-188 (190)
114 2dyk_A GTP-binding protein; GT 99.9 7.2E-27 2.5E-31 160.9 13.3 151 13-180 2-160 (161)
115 2wjg_A FEOB, ferrous iron tran 99.9 3.7E-27 1.3E-31 166.5 12.0 159 10-184 5-171 (188)
116 3r7w_B Gtpase2, GTP-binding pr 99.9 1.6E-28 5.6E-33 184.5 5.2 161 14-185 1-177 (331)
117 2gj8_A MNME, tRNA modification 99.9 5.3E-27 1.8E-31 163.6 12.1 155 11-182 3-166 (172)
118 3iby_A Ferrous iron transport 99.9 3.7E-27 1.3E-31 173.9 9.6 151 13-179 2-164 (256)
119 3dpu_A RAB family protein; roc 99.9 2.9E-27 9.9E-32 191.6 9.6 167 8-185 37-211 (535)
120 3i8s_A Ferrous iron transport 99.9 4.1E-27 1.4E-31 175.5 8.1 157 11-183 2-170 (274)
121 3b1v_A Ferrous iron uptake tra 99.9 1.2E-26 3.9E-31 172.5 8.6 154 11-181 2-163 (272)
122 4dhe_A Probable GTP-binding pr 99.9 1.6E-26 5.3E-31 167.6 8.8 168 8-184 25-213 (223)
123 3k53_A Ferrous iron transport 99.9 1.3E-25 4.5E-30 167.3 13.1 159 11-184 2-168 (271)
124 2hjg_A GTP-binding protein ENG 99.9 1.8E-25 6.1E-30 176.9 11.6 164 10-185 173-352 (436)
125 1wf3_A GTP-binding protein; GT 99.9 1.7E-24 5.8E-29 163.1 14.1 159 10-182 5-173 (301)
126 3gee_A MNME, tRNA modification 99.9 1.5E-24 5E-29 172.3 14.2 158 10-181 231-397 (476)
127 2e87_A Hypothetical protein PH 99.9 1.4E-23 4.7E-28 162.1 17.0 163 10-184 165-338 (357)
128 3qq5_A Small GTP-binding prote 99.9 2.7E-25 9.2E-30 173.8 7.4 160 8-183 30-197 (423)
129 4dcu_A GTP-binding protein ENG 99.9 2.2E-24 7.6E-29 171.5 12.6 165 9-185 192-372 (456)
130 1nrj_B SR-beta, signal recogni 99.9 1.9E-25 6.6E-30 161.3 5.9 150 9-168 9-170 (218)
131 1wb1_A Translation elongation 99.9 5.6E-24 1.9E-28 169.8 13.6 160 9-181 16-188 (482)
132 3sjy_A Translation initiation 99.9 1.8E-23 6.1E-28 163.9 15.4 169 7-182 3-192 (403)
133 1lnz_A SPO0B-associated GTP-bi 99.9 2.3E-24 7.9E-29 164.6 9.5 163 13-184 159-332 (342)
134 1s0u_A EIF-2-gamma, translatio 99.9 3.3E-23 1.1E-27 162.6 15.9 165 7-181 3-197 (408)
135 1mky_A Probable GTP-binding pr 99.9 3.4E-23 1.2E-27 163.9 14.8 155 13-183 2-167 (439)
136 1xzp_A Probable tRNA modificat 99.9 1.1E-23 3.9E-28 167.3 10.9 154 11-182 242-405 (482)
137 1ega_A Protein (GTP-binding pr 99.9 8.5E-23 2.9E-27 154.1 15.1 161 10-183 6-176 (301)
138 3izy_P Translation initiation 99.9 1.6E-25 5.5E-30 179.3 -0.0 163 11-183 3-169 (537)
139 1kk1_A EIF2gamma; initiation o 99.9 5.5E-23 1.9E-27 161.5 13.6 165 7-181 5-199 (410)
140 3j2k_7 ERF3, eukaryotic polype 99.9 1.4E-22 4.8E-27 160.1 15.3 158 8-174 13-217 (439)
141 3geh_A MNME, tRNA modification 99.9 2.3E-23 7.9E-28 164.9 10.4 155 11-184 223-386 (462)
142 2ywe_A GTP-binding protein LEP 99.9 1.7E-22 5.7E-27 163.9 15.0 162 9-182 3-184 (600)
143 3cb4_D GTP-binding protein LEP 99.9 1.2E-22 4.2E-27 164.9 14.3 160 11-182 3-182 (599)
144 1mky_A Probable GTP-binding pr 99.9 1.9E-22 6.6E-27 159.7 14.5 163 10-184 178-357 (439)
145 3t5d_A Septin-7; GTP-binding p 99.9 1.5E-23 5.1E-28 156.4 7.6 164 8-180 4-202 (274)
146 2xtp_A GTPase IMAP family memb 99.9 2.5E-22 8.7E-27 148.8 13.3 170 9-184 19-210 (260)
147 2qtf_A Protein HFLX, GTP-bindi 99.9 7.4E-22 2.5E-26 152.1 16.2 163 14-184 181-356 (364)
148 1jny_A EF-1-alpha, elongation 99.9 4.8E-24 1.6E-28 168.5 4.2 164 8-174 2-205 (435)
149 3lxx_A GTPase IMAP family memb 99.9 2.7E-21 9.2E-26 141.5 16.8 170 7-183 24-215 (239)
150 3tr5_A RF-3, peptide chain rel 99.9 1.8E-22 6.2E-27 162.2 10.9 120 7-136 8-149 (528)
151 2hjg_A GTP-binding protein ENG 99.9 2.7E-23 9.3E-28 164.4 5.7 154 13-183 4-166 (436)
152 3p26_A Elongation factor 1 alp 99.9 3.6E-22 1.2E-26 159.7 12.1 156 9-171 30-227 (483)
153 2ged_A SR-beta, signal recogni 99.9 8.8E-23 3E-27 144.6 7.0 119 9-136 45-171 (193)
154 1d2e_A Elongation factor TU (E 99.9 2.3E-22 8E-27 157.2 9.8 161 11-181 2-194 (397)
155 3ohm_A Guanine nucleotide-bind 99.9 3.7E-22 1.3E-26 150.9 10.4 130 52-186 160-322 (327)
156 1zo1_I IF2, translation initia 99.9 4.8E-24 1.7E-28 169.5 -0.4 157 10-179 2-164 (501)
157 1g7s_A Translation initiation 99.9 7.5E-22 2.6E-26 160.4 12.3 163 10-183 3-219 (594)
158 1cip_A Protein (guanine nucleo 99.9 1.1E-21 3.9E-26 150.2 12.4 130 52-186 186-348 (353)
159 2elf_A Protein translation elo 99.9 5.5E-22 1.9E-26 153.3 10.4 150 14-183 23-181 (370)
160 3lxw_A GTPase IMAP family memb 99.9 6.2E-22 2.1E-26 145.4 9.7 169 9-183 18-209 (247)
161 2c78_A Elongation factor TU-A; 99.9 1.2E-22 4E-27 159.4 6.2 151 8-168 7-180 (405)
162 2qag_A Septin-2, protein NEDD5 99.9 1.3E-22 4.5E-27 156.5 5.8 167 9-185 34-236 (361)
163 1zun_B Sulfate adenylate trans 99.9 1.3E-21 4.4E-26 154.7 11.4 156 9-174 21-216 (434)
164 1r5b_A Eukaryotic peptide chai 99.9 1.2E-22 4.1E-27 161.7 5.0 160 8-173 39-243 (467)
165 1f60_A Elongation factor EEF1A 99.9 8.6E-22 2.9E-26 156.4 8.4 155 9-172 4-202 (458)
166 1pui_A ENGB, probable GTP-bind 99.9 2.8E-21 9.5E-26 138.7 9.9 162 8-182 22-199 (210)
167 3izq_1 HBS1P, elongation facto 99.9 1.1E-21 3.9E-26 160.2 8.4 158 9-172 164-362 (611)
168 2xtz_A Guanine nucleotide-bind 99.8 7.3E-21 2.5E-25 145.7 11.6 125 59-186 181-349 (354)
169 3mca_A HBS1, elongation factor 99.8 5.9E-22 2E-26 161.4 4.9 153 9-170 174-371 (592)
170 3avx_A Elongation factor TS, e 99.8 7.1E-21 2.4E-25 161.8 11.1 166 8-181 292-485 (1289)
171 4dcu_A GTP-binding protein ENG 99.8 1.7E-21 5.7E-26 155.0 6.6 156 10-182 21-185 (456)
172 1dar_A EF-G, elongation factor 99.8 7E-20 2.4E-24 151.8 15.2 126 1-136 1-144 (691)
173 4fid_A G protein alpha subunit 99.8 5.8E-21 2E-25 144.8 7.4 123 60-186 160-331 (340)
174 2aka_B Dynamin-1; fusion prote 99.8 1.4E-21 4.7E-26 147.6 2.9 162 9-180 23-251 (299)
175 1udx_A The GTP-binding protein 99.8 2.4E-19 8.2E-24 139.9 12.4 164 13-185 158-328 (416)
176 3def_A T7I23.11 protein; chlor 99.8 6.6E-19 2.2E-23 130.5 13.7 122 10-135 34-165 (262)
177 2qnr_A Septin-2, protein NEDD5 99.8 2.4E-20 8.1E-25 140.6 5.6 167 9-185 15-217 (301)
178 2j69_A Bacterial dynamin-like 99.8 5.3E-19 1.8E-23 146.7 12.4 168 10-184 67-327 (695)
179 2xex_A Elongation factor G; GT 99.8 2.9E-18 9.9E-23 142.2 15.5 122 5-136 3-142 (693)
180 2rdo_7 EF-G, elongation factor 99.8 9.3E-18 3.2E-22 139.3 17.2 121 8-136 6-149 (704)
181 2dy1_A Elongation factor G; tr 99.8 1.8E-18 6.2E-23 142.9 12.6 116 9-134 6-139 (665)
182 2h5e_A Peptide chain release f 99.8 2.7E-19 9.3E-24 144.0 6.5 152 9-174 10-187 (529)
183 1h65_A Chloroplast outer envel 99.8 9.3E-18 3.2E-22 124.8 13.7 122 10-136 37-169 (270)
184 1wxq_A GTP-binding protein; st 99.8 1.6E-18 5.5E-23 135.0 9.0 85 13-97 1-114 (397)
185 1jwy_B Dynamin A GTPase domain 99.8 4.2E-19 1.4E-23 134.9 5.6 165 9-184 21-264 (315)
186 2qag_C Septin-7; cell cycle, c 99.8 1.3E-18 4.5E-23 135.9 8.2 163 9-180 28-225 (418)
187 3t34_A Dynamin-related protein 99.8 6E-19 2E-23 136.4 5.4 157 11-177 33-256 (360)
188 1u0l_A Probable GTPase ENGC; p 99.7 1.2E-18 4.2E-23 131.3 6.6 135 27-178 32-169 (301)
189 3vqt_A RF-3, peptide chain rel 99.7 2.4E-17 8.1E-22 133.2 12.5 119 9-137 28-168 (548)
190 2wsm_A Hydrogenase expression/ 99.7 4.9E-18 1.7E-22 122.7 7.7 159 10-185 28-217 (221)
191 1zcb_A G alpha I/13; GTP-bindi 99.7 1.1E-17 3.8E-22 128.6 9.5 158 22-186 157-357 (362)
192 1azs_C GS-alpha; complex (lyas 99.7 2.2E-17 7.6E-22 127.9 9.8 128 52-186 210-389 (402)
193 2x2e_A Dynamin-1; nitration, h 99.7 3.5E-19 1.2E-23 137.3 -0.8 159 10-178 29-254 (353)
194 3p32_A Probable GTPase RV1496/ 99.7 4.4E-18 1.5E-22 131.2 5.3 107 61-182 172-284 (355)
195 1n0u_A EF-2, elongation factor 99.7 5.9E-17 2E-21 136.9 10.6 118 9-134 16-163 (842)
196 1jal_A YCHF protein; nucleotid 99.7 7.8E-16 2.7E-20 117.8 14.8 149 13-164 3-239 (363)
197 2hf9_A Probable hydrogenase ni 99.7 1.2E-16 4.1E-21 115.7 9.4 157 10-183 36-225 (226)
198 2www_A Methylmalonic aciduria 99.7 1E-17 3.4E-22 128.7 0.7 106 61-181 167-278 (349)
199 2p67_A LAO/AO transport system 99.6 1.9E-16 6.5E-21 121.4 6.4 107 61-182 149-261 (341)
200 2qpt_A EH domain-containing pr 99.6 2.6E-16 9E-21 127.3 5.4 120 9-135 62-232 (550)
201 4fn5_A EF-G 1, elongation fact 99.6 1.1E-14 3.9E-19 121.3 15.3 123 6-136 7-152 (709)
202 2dby_A GTP-binding protein; GD 99.6 7.6E-16 2.6E-20 118.5 7.6 159 13-172 2-252 (368)
203 4a9a_A Ribosome-interacting GT 99.6 1.8E-14 6.1E-19 110.9 12.9 140 9-154 69-221 (376)
204 3j25_A Tetracycline resistance 99.6 2.4E-16 8.1E-21 129.8 2.6 116 12-137 2-135 (638)
205 3zvr_A Dynamin-1; hydrolase, D 99.6 7E-16 2.4E-20 127.7 4.8 159 10-179 49-275 (772)
206 1yrb_A ATP(GTP)binding protein 99.6 2E-14 6.8E-19 106.3 10.4 115 61-182 109-257 (262)
207 2qm8_A GTPase/ATPase; G protei 99.5 2E-13 6.8E-18 104.3 9.5 104 61-181 148-260 (337)
208 2yv5_A YJEQ protein; hydrolase 99.5 3.6E-13 1.2E-17 101.5 10.3 97 71-177 66-164 (302)
209 2ohf_A Protein OLA1, GTP-bindi 99.4 2.7E-13 9.3E-18 104.8 4.4 88 10-97 20-129 (396)
210 3l82_B F-box only protein 4; T 99.4 3E-13 1E-17 94.7 4.0 110 69-183 110-224 (227)
211 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 2.8E-11 9.4E-16 93.8 11.5 87 10-96 18-127 (392)
212 3l2o_B F-box only protein 4; s 99.2 2.9E-12 9.8E-17 94.1 1.0 110 68-182 194-308 (312)
213 2qag_B Septin-6, protein NEDD5 99.1 6.8E-11 2.3E-15 92.2 7.0 148 6-163 36-217 (427)
214 3sop_A Neuronal-specific septi 99.1 1.1E-10 3.7E-15 86.5 7.1 139 12-160 2-178 (270)
215 3ec1_A YQEH GTPase; atnos1, at 99.1 2E-11 6.7E-16 94.4 0.6 140 13-169 163-318 (369)
216 2j37_W Signal recognition part 99.0 1.7E-10 5.8E-15 92.1 4.6 153 10-179 99-310 (504)
217 3h2y_A GTPase family protein; 99.0 7.3E-10 2.5E-14 85.6 7.8 101 70-180 55-158 (368)
218 3h2y_A GTPase family protein; 98.9 6E-11 2.1E-15 91.6 -0.6 135 13-164 161-312 (368)
219 1tq4_A IIGP1, interferon-induc 98.9 1.2E-08 4E-13 79.7 11.6 164 11-185 68-256 (413)
220 3ec1_A YQEH GTPase; atnos1, at 98.9 2E-09 6.7E-14 83.2 6.0 101 70-180 57-160 (369)
221 1puj_A YLQF, conserved hypothe 98.8 1.5E-08 5E-13 75.5 7.9 99 67-182 5-106 (282)
222 1puj_A YLQF, conserved hypothe 98.6 3E-08 1E-12 73.8 5.4 58 10-72 118-176 (282)
223 3dm5_A SRP54, signal recogniti 98.6 1.7E-07 5.7E-12 73.6 8.5 141 11-170 99-279 (443)
224 3cnl_A YLQF, putative uncharac 98.6 2.3E-08 7.7E-13 73.7 2.9 56 13-73 100-156 (262)
225 1f5n_A Interferon-induced guan 98.5 9.3E-08 3.2E-12 77.7 3.8 64 9-73 35-103 (592)
226 3kl4_A SRP54, signal recogniti 98.4 2.3E-07 8E-12 72.8 4.2 91 61-170 180-278 (433)
227 2v3c_C SRP54, signal recogniti 98.4 5.6E-07 1.9E-11 70.8 6.4 24 11-34 98-121 (432)
228 1j8m_F SRP54, signal recogniti 98.3 2E-06 6.7E-11 64.5 7.5 92 61-172 181-281 (297)
229 3cnl_A YLQF, putative uncharac 98.3 4.1E-07 1.4E-11 66.9 3.3 93 68-178 4-97 (262)
230 1t9h_A YLOQ, probable GTPase E 98.2 1.3E-06 4.5E-11 65.5 5.2 88 79-174 81-169 (307)
231 3e70_C DPA, signal recognition 98.1 1.4E-05 4.9E-10 60.6 8.1 143 10-171 127-309 (328)
232 3szr_A Interferon-induced GTP- 98.1 8.2E-06 2.8E-10 67.1 7.2 23 14-36 47-69 (608)
233 2rcn_A Probable GTPase ENGC; Y 98.0 5.2E-05 1.8E-09 58.0 10.2 85 81-175 127-212 (358)
234 1bif_A 6-phosphofructo-2-kinas 98.0 4.3E-07 1.5E-11 72.5 -1.9 102 10-113 37-148 (469)
235 3q5d_A Atlastin-1; G protein, 97.9 1.3E-05 4.6E-10 63.1 5.5 27 9-35 64-90 (447)
236 1ye8_A Protein THEP1, hypothet 97.7 2.8E-05 9.5E-10 53.7 3.2 22 14-35 2-23 (178)
237 1kgd_A CASK, peripheral plasma 97.6 4.4E-05 1.5E-09 52.8 3.1 22 14-35 7-28 (180)
238 1lvg_A Guanylate kinase, GMP k 97.5 5.4E-05 1.8E-09 53.2 3.1 21 14-34 6-26 (198)
239 3asz_A Uridine kinase; cytidin 97.5 6.5E-05 2.2E-09 53.2 3.5 26 9-34 3-28 (211)
240 1knq_A Gluconate kinase; ALFA/ 97.5 9.4E-05 3.2E-09 50.7 3.8 25 10-34 6-30 (175)
241 3ney_A 55 kDa erythrocyte memb 97.4 9E-05 3.1E-09 51.9 3.4 27 9-35 16-42 (197)
242 3tr0_A Guanylate kinase, GMP k 97.4 8E-05 2.7E-09 52.3 3.1 22 14-35 9-30 (205)
243 3a00_A Guanylate kinase, GMP k 97.4 8.5E-05 2.9E-09 51.6 3.0 21 15-35 4-24 (186)
244 1zp6_A Hypothetical protein AT 97.4 8.6E-05 3E-09 51.6 3.0 23 13-35 10-32 (191)
245 3c8u_A Fructokinase; YP_612366 97.4 0.00012 4.1E-09 51.8 3.6 27 9-35 19-45 (208)
246 4gp7_A Metallophosphoesterase; 97.4 7.9E-05 2.7E-09 51.0 2.5 20 14-33 11-30 (171)
247 1t9h_A YLOQ, probable GTPase E 97.4 4.9E-05 1.7E-09 57.0 1.5 24 13-36 174-197 (307)
248 1znw_A Guanylate kinase, GMP k 97.4 0.00011 3.7E-09 52.0 3.1 22 14-35 22-43 (207)
249 1s96_A Guanylate kinase, GMP k 97.3 0.00011 3.9E-09 52.4 3.1 23 14-36 18-40 (219)
250 2xxa_A Signal recognition part 97.3 0.00046 1.6E-08 54.4 6.8 24 10-33 98-121 (433)
251 1z6g_A Guanylate kinase; struc 97.3 0.00011 3.9E-09 52.4 3.1 22 14-35 25-46 (218)
252 4eun_A Thermoresistant glucoki 97.3 0.00013 4.4E-09 51.3 3.2 25 10-34 27-51 (200)
253 3tau_A Guanylate kinase, GMP k 97.3 0.00012 4.3E-09 51.7 3.1 24 13-36 9-32 (208)
254 1ex7_A Guanylate kinase; subst 97.3 0.00013 4.5E-09 50.6 3.1 21 15-35 4-24 (186)
255 1y63_A LMAJ004144AAA protein; 97.3 0.00015 5E-09 50.3 3.2 28 8-35 6-33 (184)
256 2j41_A Guanylate kinase; GMP, 97.3 0.00015 5.1E-09 51.0 3.2 25 12-36 6-30 (207)
257 1htw_A HI0065; nucleotide-bind 97.3 0.00016 5.3E-09 48.9 3.1 23 14-36 35-57 (158)
258 1ly1_A Polynucleotide kinase; 97.3 0.00019 6.7E-09 49.2 3.5 22 13-34 3-24 (181)
259 3t61_A Gluconokinase; PSI-biol 97.3 0.00014 4.8E-09 51.1 2.7 22 13-34 19-40 (202)
260 2qor_A Guanylate kinase; phosp 97.2 0.00017 5.9E-09 50.8 3.1 24 12-35 12-35 (204)
261 3lw7_A Adenylate kinase relate 97.2 0.00017 5.9E-09 49.1 2.9 20 13-32 2-21 (179)
262 1kag_A SKI, shikimate kinase I 97.2 0.00019 6.5E-09 49.0 3.1 21 14-34 6-26 (173)
263 3vaa_A Shikimate kinase, SK; s 97.2 0.00024 8.2E-09 49.8 3.6 22 13-34 26-47 (199)
264 3tif_A Uncharacterized ABC tra 97.2 0.00017 6E-09 52.0 2.9 23 14-36 33-55 (235)
265 1qf9_A UMP/CMP kinase, protein 97.2 0.00026 8.7E-09 49.1 3.7 23 12-34 6-28 (194)
266 2bdt_A BH3686; alpha-beta prot 97.2 0.0002 6.9E-09 49.7 3.1 21 14-34 4-24 (189)
267 2bbw_A Adenylate kinase 4, AK4 97.2 0.00023 7.7E-09 51.7 3.3 22 12-33 27-48 (246)
268 3kb2_A SPBC2 prophage-derived 97.2 0.00022 7.6E-09 48.5 3.1 21 14-34 3-23 (173)
269 3fb4_A Adenylate kinase; psych 97.2 0.0002 6.8E-09 50.8 2.9 21 13-33 1-21 (216)
270 2rcn_A Probable GTPase ENGC; Y 97.2 0.00022 7.5E-09 54.6 3.2 24 14-37 217-240 (358)
271 3dl0_A Adenylate kinase; phosp 97.2 0.00021 7.2E-09 50.7 2.9 21 13-33 1-21 (216)
272 2pcj_A ABC transporter, lipopr 97.2 0.00021 7.3E-09 51.2 2.8 22 14-35 32-53 (224)
273 2onk_A Molybdate/tungstate ABC 97.1 0.00025 8.4E-09 51.4 3.1 23 14-36 26-48 (240)
274 2cdn_A Adenylate kinase; phosp 97.1 0.00028 9.6E-09 49.5 3.3 27 8-34 16-42 (201)
275 3ec2_A DNA replication protein 97.1 0.00023 7.8E-09 49.0 2.8 24 12-35 38-61 (180)
276 3tlx_A Adenylate kinase 2; str 97.1 0.00032 1.1E-08 50.9 3.7 25 10-34 27-51 (243)
277 2i3b_A HCR-ntpase, human cance 97.1 0.00023 7.8E-09 49.6 2.8 21 14-34 3-23 (189)
278 3sr0_A Adenylate kinase; phosp 97.1 0.00026 8.8E-09 50.0 3.1 22 13-34 1-22 (206)
279 2eyu_A Twitching motility prot 97.1 0.00026 8.9E-09 51.9 3.0 22 13-34 26-47 (261)
280 3cm0_A Adenylate kinase; ATP-b 97.1 0.00036 1.2E-08 48.2 3.6 23 12-34 4-26 (186)
281 1sgw_A Putative ABC transporte 97.1 0.00027 9.2E-09 50.2 2.9 22 14-35 37-58 (214)
282 3gfo_A Cobalt import ATP-bindi 97.1 0.00026 8.9E-09 52.3 2.9 23 14-36 36-58 (275)
283 2v9p_A Replication protein E1; 97.1 0.00029 1E-08 52.8 3.2 22 14-35 128-149 (305)
284 2rhm_A Putative kinase; P-loop 97.1 0.00034 1.2E-08 48.5 3.4 23 12-34 5-27 (193)
285 1b0u_A Histidine permease; ABC 97.1 0.00027 9.2E-09 51.9 2.9 23 14-36 34-56 (262)
286 1uf9_A TT1252 protein; P-loop, 97.1 0.00036 1.2E-08 48.8 3.5 27 9-35 5-31 (203)
287 1np6_A Molybdopterin-guanine d 97.1 0.00033 1.1E-08 48.1 3.1 23 13-35 7-29 (174)
288 4ido_A Atlastin-1; GTPase, GTP 97.1 0.0086 2.9E-07 47.2 11.3 66 9-74 64-153 (457)
289 2cbz_A Multidrug resistance-as 97.1 0.00032 1.1E-08 50.7 3.1 22 14-35 33-54 (237)
290 2if2_A Dephospho-COA kinase; a 97.1 0.00032 1.1E-08 49.3 3.1 22 13-34 2-23 (204)
291 3b85_A Phosphate starvation-in 97.1 0.00027 9.1E-09 50.1 2.6 22 14-35 24-45 (208)
292 1g6h_A High-affinity branched- 97.1 0.0003 1E-08 51.5 2.9 23 14-36 35-57 (257)
293 4g1u_C Hemin import ATP-bindin 97.1 0.00029 1E-08 51.8 2.9 23 14-36 39-61 (266)
294 1nks_A Adenylate kinase; therm 97.1 0.00038 1.3E-08 48.3 3.3 21 14-34 3-23 (194)
295 1jjv_A Dephospho-COA kinase; P 97.1 0.00041 1.4E-08 48.8 3.5 22 13-34 3-24 (206)
296 2pze_A Cystic fibrosis transme 97.1 0.00032 1.1E-08 50.4 2.9 23 14-36 36-58 (229)
297 1mv5_A LMRA, multidrug resista 97.1 0.00036 1.2E-08 50.6 3.2 23 14-36 30-52 (243)
298 1qhx_A CPT, protein (chloramph 97.0 0.00034 1.2E-08 47.9 2.9 22 13-34 4-25 (178)
299 2olj_A Amino acid ABC transpor 97.0 0.00033 1.1E-08 51.5 2.9 22 14-35 52-73 (263)
300 2ff7_A Alpha-hemolysin translo 97.0 0.00036 1.2E-08 50.7 3.1 23 14-36 37-59 (247)
301 1tev_A UMP-CMP kinase; ploop, 97.0 0.00042 1.4E-08 48.1 3.4 23 12-34 3-25 (196)
302 1aky_A Adenylate kinase; ATP:A 97.0 0.00035 1.2E-08 49.7 3.0 23 12-34 4-26 (220)
303 3tqc_A Pantothenate kinase; bi 97.0 0.0005 1.7E-08 51.9 3.9 26 9-34 89-114 (321)
304 2jaq_A Deoxyguanosine kinase; 97.0 0.00035 1.2E-08 48.9 3.0 21 14-34 2-22 (205)
305 1ji0_A ABC transporter; ATP bi 97.0 0.00034 1.1E-08 50.7 2.9 22 14-35 34-55 (240)
306 2ehv_A Hypothetical protein PH 97.0 0.00036 1.2E-08 50.5 3.1 20 14-33 32-51 (251)
307 1cke_A CK, MSSA, protein (cyti 97.0 0.00041 1.4E-08 49.5 3.4 22 13-34 6-27 (227)
308 3cwq_A Para family chromosome 97.0 0.0061 2.1E-07 43.0 9.4 66 61-135 68-134 (209)
309 3aez_A Pantothenate kinase; tr 97.0 0.00052 1.8E-08 51.7 3.9 27 9-35 87-113 (312)
310 1vpl_A ABC transporter, ATP-bi 97.0 0.00035 1.2E-08 51.1 2.9 23 14-36 43-65 (256)
311 1e4v_A Adenylate kinase; trans 97.0 0.00034 1.2E-08 49.6 2.8 21 14-34 2-22 (214)
312 2qi9_C Vitamin B12 import ATP- 97.0 0.00036 1.2E-08 50.8 2.9 22 14-35 28-49 (249)
313 1uj2_A Uridine-cytidine kinase 97.0 0.00043 1.5E-08 50.4 3.4 28 7-34 17-44 (252)
314 2qt1_A Nicotinamide riboside k 97.0 0.00055 1.9E-08 48.2 3.9 26 10-35 19-44 (207)
315 1nn5_A Similar to deoxythymidy 97.0 0.00037 1.3E-08 49.2 3.0 24 11-34 8-31 (215)
316 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00038 1.3E-08 50.7 3.1 22 14-35 31-52 (250)
317 2plr_A DTMP kinase, probable t 97.0 0.00048 1.6E-08 48.5 3.5 23 12-34 4-26 (213)
318 4a74_A DNA repair and recombin 97.0 0.00038 1.3E-08 49.7 3.0 22 14-35 27-48 (231)
319 1odf_A YGR205W, hypothetical 3 97.0 0.00056 1.9E-08 50.9 3.9 25 9-33 28-52 (290)
320 2zu0_C Probable ATP-dependent 97.0 0.0004 1.4E-08 51.1 3.1 22 14-35 48-69 (267)
321 1gvn_B Zeta; postsegregational 97.0 0.00052 1.8E-08 51.1 3.7 25 10-34 31-55 (287)
322 3be4_A Adenylate kinase; malar 97.0 0.00041 1.4E-08 49.3 3.0 24 11-34 4-27 (217)
323 1kht_A Adenylate kinase; phosp 97.0 0.00045 1.5E-08 47.8 3.2 22 13-34 4-25 (192)
324 2ghi_A Transport protein; mult 97.0 0.00042 1.5E-08 50.8 3.1 22 14-35 48-69 (260)
325 3uie_A Adenylyl-sulfate kinase 97.0 0.00045 1.6E-08 48.4 3.2 25 10-34 23-47 (200)
326 3lnc_A Guanylate kinase, GMP k 97.0 0.00024 8.2E-09 51.0 1.8 22 14-35 29-51 (231)
327 1u0l_A Probable GTPase ENGC; p 97.0 0.00036 1.2E-08 52.3 2.8 23 14-36 171-193 (301)
328 1zd8_A GTP:AMP phosphotransfer 97.0 0.0004 1.4E-08 49.7 2.9 22 12-33 7-28 (227)
329 2wwf_A Thymidilate kinase, put 97.0 0.00048 1.7E-08 48.5 3.3 23 12-34 10-32 (212)
330 2ixe_A Antigen peptide transpo 97.0 0.0004 1.4E-08 51.2 2.9 23 14-36 47-69 (271)
331 2ihy_A ABC transporter, ATP-bi 97.0 0.00046 1.6E-08 51.1 3.2 23 14-36 49-71 (279)
332 2nq2_C Hypothetical ABC transp 97.0 0.00041 1.4E-08 50.6 2.9 23 14-36 33-55 (253)
333 3trf_A Shikimate kinase, SK; a 97.0 0.00049 1.7E-08 47.5 3.1 22 13-34 6-27 (185)
334 2f1r_A Molybdopterin-guanine d 97.0 0.00025 8.6E-09 48.6 1.6 22 14-35 4-25 (171)
335 1ukz_A Uridylate kinase; trans 97.0 0.00067 2.3E-08 47.6 3.9 25 10-34 13-37 (203)
336 2yv5_A YJEQ protein; hydrolase 97.0 0.00043 1.5E-08 51.9 3.0 20 14-33 167-186 (302)
337 2jeo_A Uridine-cytidine kinase 97.0 0.00058 2E-08 49.5 3.6 25 10-34 23-47 (245)
338 2yvu_A Probable adenylyl-sulfa 96.9 0.00072 2.5E-08 46.7 3.8 26 9-34 10-35 (186)
339 2kjq_A DNAA-related protein; s 96.9 0.00037 1.3E-08 46.5 2.3 22 14-35 38-59 (149)
340 2yz2_A Putative ABC transporte 96.9 0.00046 1.6E-08 50.8 2.9 23 14-36 35-57 (266)
341 2x8a_A Nuclear valosin-contain 96.9 0.0005 1.7E-08 50.8 3.1 21 15-35 47-67 (274)
342 1zak_A Adenylate kinase; ATP:A 96.9 0.00039 1.3E-08 49.6 2.3 22 12-33 5-26 (222)
343 1lw7_A Transcriptional regulat 96.9 0.0005 1.7E-08 53.0 3.0 24 12-35 170-193 (365)
344 2pt5_A Shikimate kinase, SK; a 96.9 0.00057 1.9E-08 46.3 3.0 21 14-34 2-22 (168)
345 2pjz_A Hypothetical protein ST 96.9 0.00058 2E-08 50.1 3.2 23 14-36 32-54 (263)
346 3jvv_A Twitching mobility prot 96.9 0.00053 1.8E-08 52.6 3.1 21 14-34 125-145 (356)
347 2c95_A Adenylate kinase 1; tra 96.9 0.00055 1.9E-08 47.6 2.9 23 12-34 9-31 (196)
348 1rz3_A Hypothetical protein rb 96.9 0.00084 2.9E-08 47.1 3.9 25 10-34 20-44 (201)
349 2v54_A DTMP kinase, thymidylat 96.9 0.0006 2.1E-08 47.7 3.1 24 12-35 4-27 (204)
350 2xb4_A Adenylate kinase; ATP-b 96.9 0.00056 1.9E-08 48.9 3.0 21 14-34 2-22 (223)
351 3iij_A Coilin-interacting nucl 96.9 0.00053 1.8E-08 47.1 2.7 22 12-33 11-32 (180)
352 1via_A Shikimate kinase; struc 96.9 0.00051 1.7E-08 47.0 2.6 21 14-34 6-26 (175)
353 2p5t_B PEZT; postsegregational 96.9 0.00057 1.9E-08 49.8 2.9 26 9-34 29-54 (253)
354 1ixz_A ATP-dependent metallopr 96.8 0.00065 2.2E-08 49.4 3.1 21 15-35 52-72 (254)
355 1xjc_A MOBB protein homolog; s 96.8 0.00072 2.5E-08 46.1 3.1 22 13-34 5-26 (169)
356 1jbk_A CLPB protein; beta barr 96.8 0.00076 2.6E-08 46.4 3.3 24 12-35 43-66 (195)
357 3nh6_A ATP-binding cassette SU 96.8 0.00044 1.5E-08 51.9 2.2 22 14-35 82-103 (306)
358 2vli_A Antibiotic resistance p 96.8 0.00042 1.4E-08 47.7 2.0 23 12-34 5-27 (183)
359 1sq5_A Pantothenate kinase; P- 96.8 0.00089 3.1E-08 50.3 3.7 25 10-34 78-102 (308)
360 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00083 2.8E-08 49.2 3.5 23 12-34 4-26 (260)
361 3fvq_A Fe(3+) IONS import ATP- 96.8 0.00069 2.4E-08 51.9 3.0 23 14-36 32-54 (359)
362 2bbs_A Cystic fibrosis transme 96.8 0.00074 2.5E-08 50.3 3.0 22 14-35 66-87 (290)
363 1sxj_E Activator 1 40 kDa subu 96.8 0.0033 1.1E-07 47.9 6.8 20 15-34 39-58 (354)
364 2pbr_A DTMP kinase, thymidylat 96.8 0.00074 2.5E-08 46.8 2.9 21 14-34 2-22 (195)
365 2ewv_A Twitching motility prot 96.8 0.00078 2.7E-08 52.0 3.2 22 13-34 137-158 (372)
366 2bwj_A Adenylate kinase 5; pho 96.8 0.00071 2.4E-08 47.1 2.8 23 12-34 12-34 (199)
367 1rj9_A FTSY, signal recognitio 96.8 0.00076 2.6E-08 50.6 3.1 23 11-33 101-123 (304)
368 2z0h_A DTMP kinase, thymidylat 96.8 0.00076 2.6E-08 46.9 2.9 21 14-34 2-22 (197)
369 1vht_A Dephospho-COA kinase; s 96.8 0.001 3.4E-08 47.3 3.6 23 12-34 4-26 (218)
370 1gtv_A TMK, thymidylate kinase 96.8 0.00031 1.1E-08 49.6 0.9 21 14-34 2-22 (214)
371 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00073 2.5E-08 51.3 2.9 22 14-35 173-194 (330)
372 1ak2_A Adenylate kinase isoenz 96.8 0.00086 2.9E-08 48.2 3.1 24 11-34 15-38 (233)
373 3tui_C Methionine import ATP-b 96.8 0.00082 2.8E-08 51.6 3.1 23 14-36 56-78 (366)
374 2ze6_A Isopentenyl transferase 96.7 0.00086 2.9E-08 48.9 3.1 21 14-34 3-23 (253)
375 3umf_A Adenylate kinase; rossm 96.7 0.0013 4.3E-08 46.8 3.9 21 14-34 31-51 (217)
376 2gza_A Type IV secretion syste 96.7 0.00077 2.6E-08 51.8 2.9 22 14-35 177-198 (361)
377 1z47_A CYSA, putative ABC-tran 96.7 0.00084 2.9E-08 51.4 3.1 23 14-36 43-65 (355)
378 3b9q_A Chloroplast SRP recepto 96.7 0.00088 3E-08 50.2 3.1 23 11-33 99-121 (302)
379 2f6r_A COA synthase, bifunctio 96.7 0.0011 3.7E-08 49.2 3.5 24 10-33 73-96 (281)
380 1in4_A RUVB, holliday junction 96.7 0.00086 2.9E-08 51.0 3.1 23 13-35 52-74 (334)
381 2yyz_A Sugar ABC transporter, 96.7 0.00088 3E-08 51.4 3.1 23 14-36 31-53 (359)
382 1p9r_A General secretion pathw 96.7 0.00086 2.9E-08 52.6 3.1 22 14-35 169-190 (418)
383 1e6c_A Shikimate kinase; phosp 96.7 0.00094 3.2E-08 45.4 2.9 21 14-34 4-24 (173)
384 3rlf_A Maltose/maltodextrin im 96.7 0.00091 3.1E-08 51.6 3.1 23 14-36 31-53 (381)
385 2it1_A 362AA long hypothetical 96.7 0.00092 3.2E-08 51.3 3.1 23 14-36 31-53 (362)
386 4e22_A Cytidylate kinase; P-lo 96.7 0.001 3.5E-08 48.5 3.2 22 12-33 27-48 (252)
387 3pfi_A Holliday junction ATP-d 96.7 0.0054 1.8E-07 46.5 7.3 25 11-35 54-78 (338)
388 1iy2_A ATP-dependent metallopr 96.7 0.00098 3.4E-08 49.2 3.1 21 15-35 76-96 (278)
389 3r20_A Cytidylate kinase; stru 96.7 0.001 3.4E-08 47.9 3.0 23 11-33 8-30 (233)
390 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.001 3.6E-08 47.4 3.1 22 14-35 25-46 (235)
391 1g29_1 MALK, maltose transport 96.7 0.001 3.4E-08 51.3 3.1 23 14-36 31-53 (372)
392 2iyv_A Shikimate kinase, SK; t 96.7 0.001 3.5E-08 45.8 2.9 21 14-34 4-24 (184)
393 1v43_A Sugar-binding transport 96.7 0.0011 3.6E-08 51.2 3.1 23 14-36 39-61 (372)
394 2oap_1 GSPE-2, type II secreti 96.6 0.001 3.4E-08 53.6 3.0 23 14-36 262-284 (511)
395 2p65_A Hypothetical protein PF 96.6 0.00094 3.2E-08 45.7 2.5 24 12-35 43-66 (187)
396 1zuh_A Shikimate kinase; alpha 96.6 0.0013 4.5E-08 44.6 3.2 22 13-34 8-29 (168)
397 2pez_A Bifunctional 3'-phospho 96.6 0.0016 5.3E-08 44.7 3.5 23 12-34 5-27 (179)
398 1zcb_A G alpha I/13; GTP-bindi 96.6 0.0014 4.9E-08 50.3 3.5 23 10-32 31-53 (362)
399 3d31_A Sulfate/molybdate ABC t 96.6 0.00085 2.9E-08 51.3 2.2 23 14-36 28-50 (348)
400 3bos_A Putative DNA replicatio 96.6 0.0014 4.9E-08 46.9 3.3 24 11-34 51-74 (242)
401 1lv7_A FTSH; alpha/beta domain 96.6 0.0013 4.5E-08 47.9 3.1 24 12-35 45-68 (257)
402 1cr0_A DNA primase/helicase; R 96.6 0.0013 4.3E-08 49.1 3.0 22 14-35 37-58 (296)
403 2vp4_A Deoxynucleoside kinase; 96.6 0.0017 5.9E-08 46.5 3.5 26 10-35 18-43 (230)
404 2grj_A Dephospho-COA kinase; T 96.5 0.002 6.8E-08 44.9 3.7 25 10-34 10-34 (192)
405 2w58_A DNAI, primosome compone 96.5 0.0016 5.6E-08 45.5 3.3 23 13-35 55-77 (202)
406 1tue_A Replication protein E1; 96.5 0.0012 4.2E-08 46.3 2.5 21 14-34 60-80 (212)
407 3gd7_A Fusion complex of cysti 96.5 0.0014 4.6E-08 50.9 3.0 21 14-34 49-69 (390)
408 4eaq_A DTMP kinase, thymidylat 96.5 0.0021 7.2E-08 46.1 3.7 24 11-34 25-48 (229)
409 2cvh_A DNA repair and recombin 96.5 0.0016 5.4E-08 46.1 3.1 21 14-34 22-42 (220)
410 1n0w_A DNA repair protein RAD5 96.5 0.0016 5.5E-08 46.8 3.1 22 14-35 26-47 (243)
411 1m7g_A Adenylylsulfate kinase; 96.5 0.0022 7.6E-08 45.2 3.7 25 10-34 23-47 (211)
412 1oxx_K GLCV, glucose, ABC tran 96.5 0.00083 2.8E-08 51.4 1.4 23 14-36 33-55 (353)
413 3t15_A Ribulose bisphosphate c 96.5 0.0019 6.3E-08 48.2 3.3 26 10-35 34-59 (293)
414 1nij_A Hypothetical protein YJ 96.5 0.0013 4.5E-08 49.6 2.5 25 12-36 4-28 (318)
415 3kta_A Chromosome segregation 96.4 0.0018 6.1E-08 44.5 3.0 21 14-34 28-48 (182)
416 2obl_A ESCN; ATPase, hydrolase 96.4 0.0019 6.5E-08 49.4 3.3 23 14-36 73-95 (347)
417 1ltq_A Polynucleotide kinase; 96.4 0.002 6.9E-08 48.0 3.4 22 13-34 3-24 (301)
418 2og2_A Putative signal recogni 96.4 0.0027 9.1E-08 48.7 4.1 25 10-34 155-179 (359)
419 1svm_A Large T antigen; AAA+ f 96.4 0.0018 6.1E-08 50.1 3.1 24 11-34 168-191 (377)
420 2npi_A Protein CLP1; CLP1-PCF1 96.4 0.0018 6E-08 51.5 3.0 23 13-35 139-161 (460)
421 2yhs_A FTSY, cell division pro 96.4 0.0028 9.7E-08 50.5 4.0 24 10-33 291-314 (503)
422 3n70_A Transport activator; si 96.3 0.0023 7.9E-08 42.3 2.9 26 11-36 23-48 (145)
423 3nwj_A ATSK2; P loop, shikimat 96.3 0.0023 7.9E-08 46.5 3.1 22 13-34 49-70 (250)
424 1d2n_A N-ethylmaleimide-sensit 96.3 0.0033 1.1E-07 46.2 3.9 27 9-35 61-87 (272)
425 1njg_A DNA polymerase III subu 96.3 0.0023 8E-08 45.6 3.1 21 14-34 47-67 (250)
426 2chg_A Replication factor C sm 96.3 0.0024 8.2E-08 44.9 3.1 21 14-34 40-60 (226)
427 3h4m_A Proteasome-activating n 96.3 0.0025 8.5E-08 47.1 3.2 25 11-35 50-74 (285)
428 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0024 8.1E-08 42.6 2.8 19 15-33 26-44 (149)
429 3b9p_A CG5977-PA, isoform A; A 96.3 0.0025 8.6E-08 47.4 3.2 24 11-34 53-76 (297)
430 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0027 9.3E-08 46.2 3.3 24 11-34 38-61 (262)
431 3gmt_A Adenylate kinase; ssgci 96.3 0.0027 9.1E-08 45.5 3.1 23 11-33 7-29 (230)
432 3syl_A Protein CBBX; photosynt 96.3 0.003 1E-07 47.2 3.5 24 10-33 65-88 (309)
433 1nlf_A Regulatory protein REPA 96.2 0.0026 9E-08 46.9 3.0 21 14-34 32-52 (279)
434 3cf0_A Transitional endoplasmi 96.2 0.0027 9.2E-08 47.5 3.0 25 11-35 48-72 (301)
435 1l8q_A Chromosomal replication 96.2 0.0027 9.1E-08 47.9 3.0 24 12-35 37-60 (324)
436 1q3t_A Cytidylate kinase; nucl 96.2 0.0029 1E-07 45.5 3.1 26 9-34 13-38 (236)
437 3euj_A Chromosome partition pr 96.2 0.0028 9.6E-08 50.5 3.1 21 14-34 31-51 (483)
438 4fcw_A Chaperone protein CLPB; 96.2 0.0045 1.5E-07 46.3 4.0 25 11-35 46-70 (311)
439 2dpy_A FLII, flagellum-specifi 96.2 0.0032 1.1E-07 49.7 3.3 23 14-36 159-181 (438)
440 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0032 1.1E-07 51.0 3.3 23 14-36 49-71 (538)
441 2qmh_A HPR kinase/phosphorylas 96.1 0.0036 1.2E-07 43.7 3.0 23 13-35 35-57 (205)
442 2dr3_A UPF0273 protein PH0284; 96.1 0.0033 1.1E-07 45.2 3.0 21 14-34 25-45 (247)
443 3b60_A Lipid A export ATP-bind 96.1 0.0031 1.1E-07 51.7 3.1 22 14-35 371-392 (582)
444 3ozx_A RNAse L inhibitor; ATP 96.1 0.003 1E-07 51.2 2.9 23 14-36 27-49 (538)
445 3co5_A Putative two-component 96.1 0.0024 8.1E-08 42.2 1.9 23 12-34 27-49 (143)
446 3zvl_A Bifunctional polynucleo 96.0 0.0044 1.5E-07 48.6 3.6 24 11-34 257-280 (416)
447 3ake_A Cytidylate kinase; CMP 96.0 0.0041 1.4E-07 43.5 3.1 21 14-34 4-24 (208)
448 4b4t_M 26S protease regulatory 96.0 0.0041 1.4E-07 48.9 3.3 26 10-35 213-238 (434)
449 1p5z_B DCK, deoxycytidine kina 96.0 0.003 1E-07 46.2 2.4 25 10-34 22-46 (263)
450 3j16_B RLI1P; ribosome recycli 96.0 0.0036 1.2E-07 51.5 3.1 23 14-36 105-127 (608)
451 3b5x_A Lipid A export ATP-bind 96.0 0.0036 1.2E-07 51.3 3.1 22 14-35 371-392 (582)
452 1pzn_A RAD51, DNA repair and r 96.0 0.0037 1.3E-07 47.8 3.0 22 14-35 133-154 (349)
453 2px0_A Flagellar biosynthesis 96.0 0.0038 1.3E-07 46.6 3.0 22 12-33 105-126 (296)
454 1ofh_A ATP-dependent HSL prote 96.0 0.004 1.4E-07 46.4 3.1 24 11-34 49-72 (310)
455 2qby_A CDC6 homolog 1, cell di 96.0 0.0037 1.3E-07 48.0 3.0 25 11-35 44-68 (386)
456 1sxj_C Activator 1 40 kDa subu 96.0 0.0038 1.3E-07 47.4 3.0 22 14-35 48-69 (340)
457 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0046 1.6E-07 47.2 3.4 25 9-33 21-45 (359)
458 4b4t_K 26S protease regulatory 96.0 0.0043 1.5E-07 48.7 3.3 26 10-35 204-229 (428)
459 1fnn_A CDC6P, cell division co 96.0 0.0047 1.6E-07 47.6 3.4 23 14-36 46-68 (389)
460 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.0047 1.6E-07 46.7 3.2 25 11-35 44-68 (322)
461 3foz_A TRNA delta(2)-isopenten 95.9 0.0059 2E-07 45.7 3.7 23 12-34 10-32 (316)
462 2ocp_A DGK, deoxyguanosine kin 95.9 0.0052 1.8E-07 44.3 3.4 23 12-34 2-24 (241)
463 2yl4_A ATP-binding cassette SU 95.9 0.0033 1.1E-07 51.7 2.5 22 14-35 372-393 (595)
464 4b4t_L 26S protease subunit RP 95.9 0.0049 1.7E-07 48.5 3.3 26 10-35 213-238 (437)
465 3qf4_B Uncharacterized ABC tra 95.9 0.0035 1.2E-07 51.5 2.7 22 14-35 383-404 (598)
466 3eie_A Vacuolar protein sortin 95.9 0.0049 1.7E-07 46.5 3.2 25 11-35 50-74 (322)
467 4a82_A Cystic fibrosis transme 95.9 0.003 1E-07 51.7 2.2 22 14-35 369-390 (578)
468 1vma_A Cell division protein F 95.9 0.0079 2.7E-07 45.1 4.3 23 11-33 103-125 (306)
469 3crm_A TRNA delta(2)-isopenten 95.9 0.0051 1.7E-07 46.4 3.2 22 13-34 6-27 (323)
470 3bk7_A ABC transporter ATP-bin 95.9 0.0046 1.6E-07 50.8 3.2 23 14-36 119-141 (607)
471 3qf7_A RAD50; ABC-ATPase, ATPa 95.9 0.0047 1.6E-07 47.5 3.1 19 15-33 26-44 (365)
472 3d3q_A TRNA delta(2)-isopenten 95.9 0.0048 1.6E-07 46.9 3.0 22 13-34 8-29 (340)
473 1yqt_A RNAse L inhibitor; ATP- 95.9 0.0051 1.7E-07 49.9 3.3 23 14-36 314-336 (538)
474 3ld9_A DTMP kinase, thymidylat 95.9 0.0066 2.2E-07 43.3 3.5 29 6-34 15-43 (223)
475 3ozx_A RNAse L inhibitor; ATP 95.9 0.0045 1.6E-07 50.1 2.9 23 14-36 296-318 (538)
476 2qgz_A Helicase loader, putati 95.8 0.0057 1.9E-07 45.9 3.3 23 12-34 152-174 (308)
477 3bk7_A ABC transporter ATP-bin 95.8 0.0055 1.9E-07 50.4 3.3 23 14-36 384-406 (607)
478 1c9k_A COBU, adenosylcobinamid 95.8 0.0058 2E-07 42.0 3.0 21 15-35 2-22 (180)
479 1a7j_A Phosphoribulokinase; tr 95.8 0.0027 9.1E-08 47.3 1.3 23 12-34 5-27 (290)
480 1sxj_D Activator 1 41 kDa subu 95.8 0.0054 1.9E-07 46.6 3.1 22 14-35 60-81 (353)
481 3qf4_A ABC transporter, ATP-bi 95.8 0.0041 1.4E-07 51.0 2.4 22 14-35 371-392 (587)
482 3exa_A TRNA delta(2)-isopenten 95.8 0.0063 2.2E-07 45.6 3.2 21 14-34 5-25 (322)
483 4b4t_J 26S protease regulatory 95.8 0.0058 2E-07 47.5 3.1 26 10-35 180-205 (405)
484 2v1u_A Cell division control p 95.8 0.005 1.7E-07 47.3 2.7 26 10-35 42-67 (387)
485 3uk6_A RUVB-like 2; hexameric 95.8 0.0061 2.1E-07 46.7 3.2 23 13-35 71-93 (368)
486 2r62_A Cell division protease 95.7 0.0026 8.7E-08 46.6 1.0 21 14-34 46-66 (268)
487 3pxg_A Negative regulator of g 95.7 0.0061 2.1E-07 48.5 3.1 24 12-35 201-224 (468)
488 3te6_A Regulatory protein SIR3 95.7 0.005 1.7E-07 46.4 2.4 27 9-35 42-68 (318)
489 3a8t_A Adenylate isopentenyltr 95.7 0.007 2.4E-07 45.9 3.2 22 13-34 41-62 (339)
490 3u61_B DNA polymerase accessor 95.7 0.092 3.1E-06 39.4 9.4 21 15-35 51-71 (324)
491 3j16_B RLI1P; ribosome recycli 95.7 0.0063 2.1E-07 50.0 3.1 23 15-37 381-403 (608)
492 2qp9_X Vacuolar protein sortin 95.7 0.0066 2.3E-07 46.5 3.1 24 12-35 84-107 (355)
493 2z4s_A Chromosomal replication 95.7 0.0063 2.1E-07 48.1 3.0 23 12-34 130-152 (440)
494 2h92_A Cytidylate kinase; ross 95.7 0.0053 1.8E-07 43.4 2.4 23 12-34 3-25 (219)
495 4edh_A DTMP kinase, thymidylat 95.6 0.0074 2.5E-07 42.8 3.0 22 12-33 6-27 (213)
496 2dhr_A FTSH; AAA+ protein, hex 95.6 0.0066 2.2E-07 48.7 3.0 22 14-35 66-87 (499)
497 3lda_A DNA repair protein RAD5 95.6 0.0066 2.3E-07 47.3 2.9 20 14-33 180-199 (400)
498 3tqf_A HPR(Ser) kinase; transf 95.6 0.0093 3.2E-07 40.6 3.2 24 13-36 17-40 (181)
499 1tf7_A KAIC; homohexamer, hexa 95.6 0.0065 2.2E-07 49.1 2.9 19 15-33 42-60 (525)
500 2ce7_A Cell division protein F 95.6 0.0073 2.5E-07 48.1 3.1 22 13-34 50-71 (476)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=3.5e-44 Score=258.46 Aligned_cols=195 Identities=31% Similarity=0.563 Sum_probs=144.2
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
+.+.|||+|+|++|+|||||+++|+.+.|...+.++.+.++.......++..+.+.+|||+|++++..+...+++.++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||++++.+|+.+..|+..+...... ++|++||+||+|+.+. +.+..+++..+++..+ ..|+++||++|.|
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~----~~piilVgNK~Dl~~~--r~V~~~e~~~~a~~~~-~~~~e~SAktg~n 162 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLADK--RQVSIEEGERKAKELN-VMFIETSAKAGYN 162 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEEBTTTTBS
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCC----CCeEEEEeeccchHhc--CcccHHHHhhHHHHhC-CeeEEEeCCCCcC
Confidence 9999999999999999999999877654 7899999999999765 7789999999999998 7899999999999
Q ss_pred hHHHHHHHHHHHHhcccccccCCCCCc----ceeccccccccccCC
Q 028305 169 IDEAFLCVAEIALKNEHKDIYYQPQGI----SETVSEVEQRGGCAC 210 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~c~c 210 (210)
|+++|+.|++.+............... ....+++.++++|||
T Consensus 163 V~e~F~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~C 208 (216)
T 4dkx_A 163 VKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC 208 (216)
T ss_dssp HHHHHHHHHHHC----------------------------------
T ss_pred HHHHHHHHHHHHHhhhcccccccccccccccCCCCCCCCCCCCCce
Confidence 999999999998766554333222222 222355566778877
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.3e-37 Score=223.50 Aligned_cols=173 Identities=37% Similarity=0.668 Sum_probs=154.1
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 34678999999999999999999999999888888888888888888889988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
+|+|||++++.++..+..|+..+...... ++|+++|+||+|+.+. +....+++..++...+ .+++++||++|.
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 156 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKCDLKDK--RVVEYDVAKEFADANK-MPFLETSALDST 156 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 99999999999999999999988776533 7899999999999764 4566778888888877 899999999999
Q ss_pred ChHHHHHHHHHHHHhccccc
Q 028305 168 NIDEAFLCVAEIALKNEHKD 187 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~~~~~ 187 (210)
|++++|++|.+.+.+...+.
T Consensus 157 gi~~l~~~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 157 NVEDAFLTMARQIKESMSQQ 176 (206)
T ss_dssp THHHHHHHHHHHHHHHCCHH
T ss_pred CHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998776543
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=6.8e-38 Score=225.01 Aligned_cols=200 Identities=61% Similarity=1.014 Sum_probs=155.0
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
.....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 45678999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
+|+|||++++.++..+..|+..+..........++|+++|+||+|+.+ +....+++..++......+++++||++|.
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN---RQVATKRAQAWCYSKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC---CCSCHHHHHHHHHHTTSCCEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc---cccCHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 999999999999999999999887765433333789999999999973 45566777888775555899999999999
Q ss_pred ChHHHHHHHHHHHHhcccccccC--CCCCcceec-c-ccccccccCC
Q 028305 168 NIDEAFLCVAEIALKNEHKDIYY--QPQGISETV-S-EVEQRGGCAC 210 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~-~-~~~~~~~c~c 210 (210)
|++++|++|.+.+.+........ .++.+.... + +..+++||+|
T Consensus 161 gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 207 (207)
T 1vg8_A 161 NVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESCSC 207 (207)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSCCCC-----------------
T ss_pred CHHHHHHHHHHHHHHhccccccccCCCccccCCcccccccCCCCCCC
Confidence 99999999999998876543321 233333222 2 2378888978
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=7.3e-36 Score=214.21 Aligned_cols=170 Identities=30% Similarity=0.558 Sum_probs=147.5
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 45689999999999999999999999888777777766554 45667788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||++++.++..+..|+..+...... .++|+++|+||+|+.+. +.+..+++..++...+ .+++++||++|.|
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g 163 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKED---ENVPFLLVGNKSDLEDK--RQVSVEEAKNRAEQWN-VNYVETSAKTRAN 163 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEeccCcccc--ccccHHHHHHHHHHhC-CeEEEEeCCCCCC
Confidence 9999999999999999999988876532 26899999999999754 4566778888888887 7999999999999
Q ss_pred hHHHHHHHHHHHHhccc
Q 028305 169 IDEAFLCVAEIALKNEH 185 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~ 185 (210)
++++|++|.+.+.+...
T Consensus 164 i~~l~~~l~~~i~~~~~ 180 (206)
T 2bov_A 164 VDKVFFDLMREIRARKM 180 (206)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccc
Confidence 99999999999987644
No 5
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-36 Score=216.31 Aligned_cols=175 Identities=35% Similarity=0.615 Sum_probs=143.8
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 34678999999999999999999999999887778888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
+|+|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +.+..+++..+++..+ .+++++||++|.
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~----~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 161 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADD----NVAVGLIGNKSDLAHL--RAVPTEESKTFAQENQ-LLFTETSALNSE 161 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC------CEEEEEECCGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCCC-CC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 99999999999999999999988776432 7899999999999753 4566778888888877 899999999999
Q ss_pred ChHHHHHHHHHHHHhccccccc
Q 028305 168 NIDEAFLCVAEIALKNEHKDIY 189 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~~~~~~~ 189 (210)
|++++|++|.+.+.+...+...
T Consensus 162 gi~~l~~~l~~~i~~~~~~~~~ 183 (223)
T 3cpj_B 162 NVDKAFEELINTIYQKVSKHQM 183 (223)
T ss_dssp CHHHHHHHHHHHHTTCC-----
T ss_pred CHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999887665543
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=9.3e-36 Score=209.95 Aligned_cols=172 Identities=37% Similarity=0.671 Sum_probs=124.8
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 46789999999999999999999998888877888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +.+..+++..+++..+ .+++++||++|.|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 157 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKCDVNDK--RQVSKERGEKLALDYG-IKFMETSAKANIN 157 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEEC--CCSC--CCSCHHHHHHHHHHHT-CEEEECCC---CC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECccCCcc--CcCCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence 9999999999999999999988876433 7899999999999764 4566788888888888 8999999999999
Q ss_pred hHHHHHHHHHHHHhccccc
Q 028305 169 IDEAFLCVAEIALKNEHKD 187 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~~~ 187 (210)
++++|++|.+.+.+...+.
T Consensus 158 i~~l~~~l~~~i~~~~~~~ 176 (183)
T 2fu5_C 158 VENAFFTLARDIKAKMDKN 176 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 9999999999998766543
No 7
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.1e-35 Score=206.67 Aligned_cols=174 Identities=39% Similarity=0.728 Sum_probs=151.4
Q ss_pred ccccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccC
Q 028305 5 VNMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84 (210)
Q Consensus 5 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (210)
+....+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 34456789999999999999999999999998887888888888888888899988999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCC
Q 028305 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK 164 (210)
Q Consensus 85 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (210)
+|++++|||++++.++..+..|+..+..... ++|+++|+||+|+.+. +....++...++...+ .+++++||+
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~ 153 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-----DVCRILVGNKNDDPER--KVVETEDAYKFAGQMG-IQLFETSAK 153 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-----TSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CCEEECBTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCCCchh--cccCHHHHHHHHHHcC-CeEEEEECC
Confidence 9999999999999999999999998877653 7899999999998754 4566678888888888 799999999
Q ss_pred CCCChHHHHHHHHHHHHhcccc
Q 028305 165 EDCNIDEAFLCVAEIALKNEHK 186 (210)
Q Consensus 165 ~~~~v~~~~~~l~~~~~~~~~~ 186 (210)
+|.|++++|++|.+.+.+...+
T Consensus 154 ~~~gi~~l~~~l~~~~~~~~~~ 175 (181)
T 3tw8_B 154 ENVNVEEMFNCITELVLRAKKD 175 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999887653
No 8
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.5e-35 Score=213.66 Aligned_cols=177 Identities=30% Similarity=0.549 Sum_probs=144.9
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGA 85 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (210)
.|.....++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 81 (212)
T 2j0v_A 3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGA 81 (212)
T ss_dssp CCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTC
T ss_pred CCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCC
Confidence 34556789999999999999999999999988777777776554 45566788889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC------cccchHHHHHHHHHcCCCcE
Q 028305 86 DCCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS------RVVPQKKALEWCAYRGNIPY 158 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~------~~~~~~~~~~~~~~~~~~~~ 158 (210)
|++|+|||++++.+++.+. .|+..+..... ++|+++|+||+|+.+... ..+..+++..++...+..++
T Consensus 82 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (212)
T 2j0v_A 82 DIFVLAFSLISKASYENVLKKWMPELRRFAP-----NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAY 156 (212)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceE
Confidence 9999999999999999986 78888877643 789999999999865310 12367788888888885699
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhcccccc
Q 028305 159 FETSAKEDCNIDEAFLCVAEIALKNEHKDI 188 (210)
Q Consensus 159 ~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~ 188 (210)
+++||++|.|++++|++|++.+.+...+..
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~ 186 (212)
T 2j0v_A 157 IECSSKTQQNVKAVFDTAIKVVLQPPRRKE 186 (212)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHCC-----
T ss_pred EEccCCCCCCHHHHHHHHHHHHhhhhhhcc
Confidence 999999999999999999999988766444
No 9
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=205.97 Aligned_cols=173 Identities=38% Similarity=0.686 Sum_probs=155.3
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGA 85 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (210)
+...+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 34456789999999999999999999999998888888888889888999999989999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCC
Q 028305 86 DCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKE 165 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (210)
|++++|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....++...++...+ .+++++||++
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLTTK--KVVDYTTAKEFADSLG-IPFLETSAKN 162 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEEECTTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CcEEEEeCCC
Confidence 9999999999999999999999998877543 7899999999999765 5666778888888888 8999999999
Q ss_pred CCChHHHHHHHHHHHHhccc
Q 028305 166 DCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~~~ 185 (210)
|.|++++|++|.+.+.+...
T Consensus 163 g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 163 ATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp CTTHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999988765
No 10
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=7.3e-35 Score=205.82 Aligned_cols=175 Identities=36% Similarity=0.585 Sum_probs=154.1
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
...+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus 5 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 84 (186)
T 2bme_A 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAA 84 (186)
T ss_dssp CCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCC
Confidence 34567899999999999999999999999988888888888888888888998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
++|+|||++++.++..+..|+..+...... ++|+++|+||+|+.+. +....+++..++...+ .+++++||++|
T Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 157 (186)
T 2bme_A 85 GALLVYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKKDLDAD--REVTFLEASRFAQENE-LMFLETSALTG 157 (186)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEecCCCC
Confidence 999999999999999999999888776443 7899999999999653 4566678888888877 89999999999
Q ss_pred CChHHHHHHHHHHHHhcccccc
Q 028305 167 CNIDEAFLCVAEIALKNEHKDI 188 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~~~~~~~ 188 (210)
.|++++|+++.+.+.+...+..
T Consensus 158 ~gi~~l~~~l~~~~~~~~~~~~ 179 (186)
T 2bme_A 158 ENVEEAFVQCARKILNKIESGE 179 (186)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999988765433
No 11
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=3.8e-35 Score=209.94 Aligned_cols=173 Identities=36% Similarity=0.571 Sum_probs=144.1
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
...+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++++...+..+++.+|
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 34567899999999999999999999999888777788887887888888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
++|+|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +.+..+++..+++..+...++++||++|
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~~SA~~g 177 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVPHWIEDVRKYAGS----NIVQLLIGNKSDLSEL--REVSLAEAQSLAEHYDILCAIETSAKDS 177 (201)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTTCSEEEECBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCccccc--cccCHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 999999999999999999999998876532 7899999999999754 4566788888998888339999999999
Q ss_pred CChHHHHHHHHHHHHhccc
Q 028305 167 CNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~~~~ 185 (210)
.|++++|++|.+.+.+...
T Consensus 178 ~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 178 SNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp BSHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 9999999999999987654
No 12
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7e-35 Score=208.44 Aligned_cols=170 Identities=38% Similarity=0.650 Sum_probs=152.0
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
.+..++|+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+......+++.+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 45789999999999999999999999998888888888888888888999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
|+|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +.+..+++..++...+ .+++++||++|.|
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~g 175 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKIDLAER--REVSQQRAEEFSEAQD-MYYLETSAKESDN 175 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CCEEECCTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 9999999999999999999988776532 7899999999999653 4566777888888777 8999999999999
Q ss_pred hHHHHHHHHHHHHhccc
Q 028305 169 IDEAFLCVAEIALKNEH 185 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~ 185 (210)
++++|++|.+.+.+...
T Consensus 176 v~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 176 VEKLFLDLACRLISEAR 192 (201)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999987654
No 13
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=7.2e-35 Score=204.93 Aligned_cols=176 Identities=35% Similarity=0.607 Sum_probs=148.6
Q ss_pred ccccccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccc
Q 028305 3 ISVNMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFY 82 (210)
Q Consensus 3 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 82 (210)
|.....+...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++
T Consensus 3 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 82 (181)
T 2efe_B 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 82 (181)
T ss_dssp -------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHH
T ss_pred ccCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHh
Confidence 34455567889999999999999999999999988877778888778778888888889999999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEec
Q 028305 83 RGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETS 162 (210)
Q Consensus 83 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (210)
+.+|++|+|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....+++..+++..+ .+++++|
T Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~S 155 (181)
T 2efe_B 83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKSDLLDA--RKVTAEDAQTYAQENG-LFFMETS 155 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCccccc--ccCCHHHHHHHHHHcC-CEEEEEE
Confidence 9999999999999999999999999988876533 7899999999999754 5566788888888877 8999999
Q ss_pred CCCCCChHHHHHHHHHHHHhccc
Q 028305 163 AKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 163 a~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
|++|.|++++|++|.+.+.+.++
T Consensus 156 a~~g~gi~~l~~~l~~~~~~~~~ 178 (181)
T 2efe_B 156 AKTATNVKEIFYEIARRLPRVQP 178 (181)
T ss_dssp SSSCTTHHHHHHHHHHTCC----
T ss_pred CCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999988766543
No 14
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=2.9e-34 Score=201.15 Aligned_cols=172 Identities=52% Similarity=0.932 Sum_probs=149.4
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45789999999999999999999999988878888888888888888899889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||++++.++..+..|+..+..........++|+++|+||+|+.+ +....+++..+++.....+++++||++|.|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE---RQVSTEEAQAWCRDNGDYPYFETSAKDATN 160 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS---CSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc---cccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 99999999999999999999988776543344889999999999973 556778888888856668999999999999
Q ss_pred hHHHHHHHHHHHHhc
Q 028305 169 IDEAFLCVAEIALKN 183 (210)
Q Consensus 169 v~~~~~~l~~~~~~~ 183 (210)
++++|+++.+.+++.
T Consensus 161 i~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 161 VAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998764
No 15
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=8e-35 Score=206.62 Aligned_cols=172 Identities=36% Similarity=0.668 Sum_probs=148.6
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
.....+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 34678999999999999999999999998887777787878878888889988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
+|+|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....+++..+++..+ ..++++||++|.
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~----~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 169 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKSDLESR--RDVKREEGEAFAREHG-LIFMETSAKTAC 169 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccCCc--cccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 99999999999999999999988776433 7899999999999653 4566778888888887 799999999999
Q ss_pred ChHHHHHHHHHHHHhcccc
Q 028305 168 NIDEAFLCVAEIALKNEHK 186 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~~~~ 186 (210)
|++++|++|.+.+.+...+
T Consensus 170 gi~~l~~~l~~~i~~~~~~ 188 (191)
T 2a5j_A 170 NVEEAFINTAKEIYRKIQQ 188 (191)
T ss_dssp THHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999876553
No 16
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.4e-34 Score=203.62 Aligned_cols=171 Identities=28% Similarity=0.402 Sum_probs=149.4
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
+....++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+......+++.+|+
T Consensus 2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 456789999999999999999999998888877778877666 6777888988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
+++|||++++.+++.+..|+..+...... .++|+++|+||+|+.+. +.+..+++..+++..+ .+++++||++|.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 154 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGK---VQIPIMLVGNKKDLHME--RVISYEEGKALAESWN-AAFLESSAKENQ 154 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEECCTTSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccchhc--ceecHHHHHHHHHHhC-CcEEEEecCCCC
Confidence 99999999999999999999888766432 26899999999999754 6677888999999888 799999999999
Q ss_pred ChHHHHHHHHHHHHhccc
Q 028305 168 NIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~~~ 185 (210)
|++++|++|.+.+.+.+.
T Consensus 155 ~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 155 TAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp HHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHhcC
Confidence 999999999999987754
No 17
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=2.7e-34 Score=204.39 Aligned_cols=172 Identities=27% Similarity=0.508 Sum_probs=149.7
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
.....+||+|+|++|+|||||+++|.++.+...+.++.+..+. .....++..+.+.+|||||++.+...+..+++.+|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3567899999999999999999999999988777777776664 466788888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 88 CVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
+++|||++++.++..+ ..|+..+..... ++|+++|+||+|+.+...+....+++..+++..+...++++||++|
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYID-----TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAK 172 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT-----TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence 9999999999999997 678777776543 7899999999999865557788899999999998444999999999
Q ss_pred CChHHHHHHHHHHHHhccc
Q 028305 167 CNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~~~~ 185 (210)
.|++++|++|.+.+.+...
T Consensus 173 ~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp BSHHHHHHHHHHHHHCSCC
T ss_pred CCHHHHHHHHHHHHHhcCC
Confidence 9999999999999987754
No 18
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=8.7e-35 Score=204.56 Aligned_cols=177 Identities=59% Similarity=0.995 Sum_probs=138.4
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD-DKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
.....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+|||||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 45678999999999999999999999998887777888777777777776 55688999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
++|+|||++++.+++.+..|+..+..........++|+++|+||+|+.... +....+++..++......+++++||++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK-KIVSEKSAQELAKSLGDIPLFLTSAKNA 162 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-CCSCHHHHHHHHHHTTSCCEEEEBTTTT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccc-ccCCHHHHHHHHHhcCCCeEEEEecCCC
Confidence 999999999999999999999998877654444588999999999995431 3456777888887566689999999999
Q ss_pred CChHHHHHHHHHHHHhccc
Q 028305 167 CNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~~~~ 185 (210)
.|++++|++|.+.+.+.++
T Consensus 163 ~gi~~l~~~l~~~~~~~~~ 181 (182)
T 1ky3_A 163 INVDTAFEEIARSALQQNQ 181 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhc
Confidence 9999999999999987643
No 19
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=4e-34 Score=202.65 Aligned_cols=168 Identities=35% Similarity=0.655 Sum_probs=149.7
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 45689999999999999999999999988877778888888778888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....+++..+++..+ .+++++||++|.|
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSWD----NAQVILVGNKCDLEDE--RVVPAEDGRRLADDLG-FEFFEASAKENIN 171 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence 9999999999999999999988776432 7899999999999654 4556778888888888 7999999999999
Q ss_pred hHHHHHHHHHHHHhc
Q 028305 169 IDEAFLCVAEIALKN 183 (210)
Q Consensus 169 v~~~~~~l~~~~~~~ 183 (210)
++++|++|.+.+.+.
T Consensus 172 i~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 172 VKQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 20
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.2e-34 Score=201.71 Aligned_cols=167 Identities=39% Similarity=0.662 Sum_probs=141.7
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++++......+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45789999999999999999999999988877888888888878888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|+|++++.++..+..|+..+...... ++|+++|+||+|+.+. +....+++..+++..+ .+++++||++|.|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 155 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLEKE--RHVSIQEAESYAESVG-AKHYHTSAKQNKG 155 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGG----GSEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEEBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEecCCCCCC
Confidence 9999999999999999998888765432 6799999999999754 4566778888888887 8999999999999
Q ss_pred hHHHHHHHHHHHHh
Q 028305 169 IDEAFLCVAEIALK 182 (210)
Q Consensus 169 v~~~~~~l~~~~~~ 182 (210)
++++|++|.+.+.+
T Consensus 156 i~~l~~~l~~~~~~ 169 (170)
T 1z08_A 156 IEELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998864
No 21
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=205.03 Aligned_cols=173 Identities=34% Similarity=0.625 Sum_probs=151.2
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGA 85 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (210)
....+..++|+|+|++|+|||||+++|.+..+...+.++.+.++......+++..+.+.+|||||++.+...+..+++.+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 34456789999999999999999999999998877778888888888888888899999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCC
Q 028305 86 DCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKE 165 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (210)
|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+. +....+++..++...+ ..++++||++
T Consensus 99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 171 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVERWLKELYDHAE----ATIVVMLVGNKSDLSQA--REVPTEEARMFAENNG-LLFLETSALD 171 (193)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHTTSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEECTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECCCcccc--cccCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 999999999999999999999888876542 27899999999999754 4456778888888777 7999999999
Q ss_pred CCChHHHHHHHHHHHHhccc
Q 028305 166 DCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~~~ 185 (210)
|.|++++|++|.+.+.+...
T Consensus 172 ~~gi~~l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 172 STNVELAFETVLKEIFAKVS 191 (193)
T ss_dssp CTTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999987644
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.2e-34 Score=200.34 Aligned_cols=172 Identities=38% Similarity=0.628 Sum_probs=141.9
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGA 85 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (210)
...+..++|+|+|++|+|||||+++|.+..+. ..+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34567899999999999999999999998875 45677888888777778899889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCC
Q 028305 86 DCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKE 165 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (210)
|++++|+|++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....++...+++..+ .+++++||++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 157 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGNKVDSAHE--RVVKREDGEKLAKEYG-LPFMETSAKT 157 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECCSTTSC--CCSCHHHHHHHHHHHT-CCEEECCTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEECcccCcc--cccCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 9999999999999999999999888876542 7899999999999764 5566778888888887 7999999999
Q ss_pred CCChHHHHHHHHHHHHhccc
Q 028305 166 DCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~~~ 185 (210)
|.|++++|++|.+.+.+...
T Consensus 158 ~~gi~~l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 158 GLNVDLAFTAIAKELKRRSM 177 (180)
T ss_dssp CTTHHHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999876543
No 23
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=4.5e-34 Score=201.32 Aligned_cols=169 Identities=31% Similarity=0.538 Sum_probs=149.6
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
....+.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||++.+......+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3456799999999999999999999999988878878877666 677788898899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCC-C
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK-E 165 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~ 165 (210)
++++|||++++.+++.+..|+..+...... .++|+++|+||+|+.+. +.+..+++..+++..+ .+++++||+ +
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~ 165 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDR---ESFPMILVANKVDLMHL--RKVTRDQGKEMATKYN-IPYIETSAKDP 165 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTS---SCCCEEEEEECTTCSTT--CCSCHHHHHHHHHHHT-CCEEEEBCSSS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECCCchhc--cCcCHHHHHHHHHHhC-CeEEEeccCCC
Confidence 999999999999999999999888765332 27899999999999764 6677888999999988 899999999 9
Q ss_pred CCChHHHHHHHHHHHHh
Q 028305 166 DCNIDEAFLCVAEIALK 182 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~ 182 (210)
|.|++++|++|.+.+.+
T Consensus 166 ~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 166 PLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp CBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999998875
No 24
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3e-34 Score=202.51 Aligned_cols=170 Identities=22% Similarity=0.332 Sum_probs=144.4
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGA 85 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (210)
.+.+...+||+|+|++|+|||||+++|+++.+...+.++. . .+...+.+++..+.+.+|||+|++.+. +++.+
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-G-RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-E-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-c-eEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 3456789999999999999999999999999887666663 3 334777889999999999999998766 77889
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCC
Q 028305 86 DCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKE 165 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (210)
|++++|||++++.+++.+..|+..+..... ..++|+++|+||+|+.+...+.+..+++..+++..+...++++||++
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 163 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRN---ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATY 163 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSC---GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCC
Confidence 999999999999999999999998876532 12789999999999965444778888999999988778999999999
Q ss_pred CCChHHHHHHHHHHHHhccc
Q 028305 166 DCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~~~ 185 (210)
|.|++++|++|++.+.+.++
T Consensus 164 ~~gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 164 GLNVERVFQDVAQKVVALRK 183 (184)
T ss_dssp TBTHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999987754
No 25
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=4.3e-34 Score=204.69 Aligned_cols=172 Identities=31% Similarity=0.629 Sum_probs=152.2
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 34578999999999999999999999998887777888888887888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
+|+|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....+++..++...+ .+++++||++|.
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 156 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKCDMEDE--RVVSSERGRQLADHLG-FEFFEASAKDNI 156 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCS----SCEEEEEEECTTCTTS--CCSCHHHHHHHHHHHT-CEEEECBTTTTB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccCcc--cccCHHHHHHHHHHCC-CeEEEEECCCCC
Confidence 99999999999999999999988776432 7899999999999764 4566788888888888 799999999999
Q ss_pred ChHHHHHHHHHHHHhcccc
Q 028305 168 NIDEAFLCVAEIALKNEHK 186 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~~~~ 186 (210)
|++++|++|.+.+.+....
T Consensus 157 gi~~l~~~l~~~i~~~~~~ 175 (203)
T 1zbd_A 157 NVKQTFERLVDVICEKMSE 175 (203)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999998876543
No 26
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=206.95 Aligned_cols=172 Identities=38% Similarity=0.620 Sum_probs=142.3
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
.+..++|+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 46789999999999999999999999888877788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
|+|||++++.++..+..|+..+...... ++|+++|+||+|+.+. +....+++..+++..+ ..++++||++|.|
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~SA~~g~g 174 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKKDLDPE--REVTFLEASRFAQENE-LMFLETSALTGEN 174 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEECTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCCcccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 9999999999999999999888776543 7899999999999653 4566677888888877 8999999999999
Q ss_pred hHHHHHHHHHHHHhccccc
Q 028305 169 IDEAFLCVAEIALKNEHKD 187 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~~~ 187 (210)
++++|++|.+.+.+...+.
T Consensus 175 i~~l~~~l~~~i~~~~~~~ 193 (200)
T 2o52_A 175 VEEAFLKCARTILNKIDSG 193 (200)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999998776543
No 27
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=3.2e-34 Score=201.15 Aligned_cols=169 Identities=34% Similarity=0.647 Sum_probs=148.9
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
...+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 34567899999999999999999999999888777788887887888888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
++++|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....+++..+++..+ .+++++||++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 162 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKADLEAQ--RDVTYEEAKQFAEENG-LLFLEASAKTG 162 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTC
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 999999999999999999999888776543 7899999999999653 4566778888888887 89999999999
Q ss_pred CChHHHHHHHHHHHHh
Q 028305 167 CNIDEAFLCVAEIALK 182 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~ 182 (210)
.|++++|++|.+.+.+
T Consensus 163 ~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 163 ENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TTHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998764
No 28
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=3.4e-34 Score=199.38 Aligned_cols=166 Identities=39% Similarity=0.735 Sum_probs=142.3
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 57899999999999999999999998887788888888877888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|||++++.++..+..|+..+...... ++|+++|+||+|+.+ +....++...+++..+ .+++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~ 153 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDNVN 153 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTT---CCSCHHHHHHHHHHHT-CCEEECBTTTTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECccCCc---CccCHHHHHHHHHHcC-CeEEEEECCCCCCHH
Confidence 99999999999999999988876543 779999999999943 4566778888888887 799999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 028305 171 EAFLCVAEIALKNE 184 (210)
Q Consensus 171 ~~~~~l~~~~~~~~ 184 (210)
++|++|.+.+.+..
T Consensus 154 ~l~~~l~~~~~~~~ 167 (170)
T 1g16_A 154 EIFFTLAKLIQEKI 167 (170)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999997653
No 29
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=2.4e-34 Score=200.12 Aligned_cols=166 Identities=37% Similarity=0.669 Sum_probs=146.5
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
+...++|+|+|++|+|||||+++|+++.+...+.++.+.++......+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45689999999999999999999999988877778888888778888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....++...++...+ .+++++||++|.|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g 155 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADLANK--RAVDFQEAQSYADDNS-LLFMETSAKTSMN 155 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECccCccc--cccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence 9999999999999999999888876433 7899999999999653 4456677888888777 8999999999999
Q ss_pred hHHHHHHHHHHHH
Q 028305 169 IDEAFLCVAEIAL 181 (210)
Q Consensus 169 v~~~~~~l~~~~~ 181 (210)
++++|++|.+.+.
T Consensus 156 i~~l~~~i~~~~~ 168 (170)
T 1r2q_A 156 VNEIFMAIAKKLP 168 (170)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988653
No 30
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=1.9e-34 Score=202.33 Aligned_cols=172 Identities=23% Similarity=0.374 Sum_probs=142.6
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
|.....+||+|+|++|+|||||+++|.++.+.. +.++.+..+ ...+.+++..+.+.+|||+|++. ..+++++|
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d 74 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD 74 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence 456678999999999999999999999998875 566665444 56677888889999999999876 45778899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
++++|||++++.+++.+..|+..+....... ..++|+++|+||+|+.+...+.+..+++..++...+..+++++||++|
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (178)
T 2iwr_A 75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEG-RGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYG 153 (178)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCSS-SCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEecccc
Confidence 9999999999999999999877666553321 137899999999999543346777888888888775589999999999
Q ss_pred CChHHHHHHHHHHHHhcccc
Q 028305 167 CNIDEAFLCVAEIALKNEHK 186 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~~~~~ 186 (210)
.|++++|+++.+.+.+..+.
T Consensus 154 ~~i~~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 154 LNVDRVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp BTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999887653
No 31
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=205.25 Aligned_cols=170 Identities=38% Similarity=0.672 Sum_probs=143.1
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
.....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 34678999999999999999999999988877777888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
+|+|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +.+..+++..+++......++++||++|.
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~----~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 175 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNKLDCETD--REITRQQGEKFAQQITGMRFCEASAKDNF 175 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHTSTTCEEEECBTTTTB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 99999999999999999998888776443 7899999999999654 45667778888887655899999999999
Q ss_pred ChHHHHHHHHHHHHhc
Q 028305 168 NIDEAFLCVAEIALKN 183 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~ 183 (210)
|++++|++|.+.+.+.
T Consensus 176 gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 176 NVDEIFLKLVDDILKK 191 (192)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988753
No 32
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=5.2e-34 Score=200.41 Aligned_cols=172 Identities=32% Similarity=0.513 Sum_probs=148.4
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
......++|+|+|++|+|||||+++|.+..+...+.++.+..+. .....++..+.+.+|||||++++...+..+++.+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 34567899999999999999999999999888777777776664 66778888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
++++|||++++.++..+..|+..+...... .++|+++|+||+|+.+. +....++...++...+ ..++++||++|
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~ 156 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDR---DDFPVVLVGNKADLESQ--RQVPRSEASAFGASHH-VAYFEASAKLR 156 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTS---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEecCCCC
Confidence 999999999999999999998888654321 27899999999999754 4566777888888777 79999999999
Q ss_pred CChHHHHHHHHHHHHhccc
Q 028305 167 CNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~~~~ 185 (210)
.|++++|++|.+.+.+..+
T Consensus 157 ~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 157 LNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp BSHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhc
Confidence 9999999999999987655
No 33
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=4.4e-34 Score=198.45 Aligned_cols=165 Identities=36% Similarity=0.698 Sum_probs=147.2
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++++......+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46899999999999999999999999888788888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
+|||++++.+++.+..|+..+..... +.|+++|+||+|+.+. +....+++..+++..+ .+++++||++|.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLLDD--SCIKNEEAEGLAKRLK-LRFYRTSVKEDLNV 154 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHC-----SCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECBTTTTBSS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccCcc--cccCHHHHHHHHHHcC-CeEEEEecCCCCCH
Confidence 99999999999999999988877652 7899999999999753 4456778888888887 79999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028305 170 DEAFLCVAEIALK 182 (210)
Q Consensus 170 ~~~~~~l~~~~~~ 182 (210)
+++|++|.+.+.+
T Consensus 155 ~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 155 SEVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998864
No 34
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-33 Score=201.04 Aligned_cols=171 Identities=36% Similarity=0.623 Sum_probs=150.1
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
.....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 34568999999999999999999999999887888888888888888889999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
+|+|||++++.++..+..|+..+..... ..++|+++|+||+|+.+ +....++...+++..+ ..++++||++|.
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 163 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCT---RNDIVNMLVGNKIDKEN---REVDRNEGLKFARKHS-MLFIEASAKTCD 163 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCS---CSCCEEEEEEECTTSSS---CCSCHHHHHHHHHHTT-CEEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC---cCCCcEEEEEECCcCcc---cccCHHHHHHHHHHcC-CEEEEecCCCCC
Confidence 9999999999999999999888865432 23789999999999954 4566778888888877 899999999999
Q ss_pred ChHHHHHHHHHHHHhccc
Q 028305 168 NIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~~~ 185 (210)
|++++|++|.+.+.+...
T Consensus 164 gi~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 164 GVQCAFEELVEKIIQTPG 181 (195)
T ss_dssp THHHHHHHHHHHHHTSGG
T ss_pred CHHHHHHHHHHHHHhhhh
Confidence 999999999999987543
No 35
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-34 Score=205.48 Aligned_cols=170 Identities=28% Similarity=0.430 Sum_probs=142.9
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
....++|+|+|++|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 35679999999999999999999999888766666665444 34566788889999999999999988888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||++++.+++.+..|+..+...... ..++|+++|+||+|+.+ +....++...++...+ ..++++||++|.|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 157 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGS--VEDIPVMLVGNKCDETQ---REVDTREAQAVAQEWK-CAFMETSAKMNYN 157 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSC--GGGSCEEEEEECTTCSS---CSSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccCCc---cccCHHHHHHHHHHhC-CeEEEEecCCCCC
Confidence 9999999999999988888777665421 12679999999999975 4456677788888877 7999999999999
Q ss_pred hHHHHHHHHHHHHhccc
Q 028305 169 IDEAFLCVAEIALKNEH 185 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~ 185 (210)
++++|++|.+.+.+.+.
T Consensus 158 i~~l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 158 VKELFQELLTLETRRNM 174 (199)
T ss_dssp HHHHHHHHHHHCSSSCE
T ss_pred HHHHHHHHHHHHhhhhc
Confidence 99999999998766544
No 36
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.1e-35 Score=207.65 Aligned_cols=172 Identities=34% Similarity=0.619 Sum_probs=152.5
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
.+.+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence 34567899999999999999999999998888777788887888888888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
++++|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....++...++...+ .+++++||++|
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 170 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTYSWD----NAQVILVGNKCDMEEE--RVVPTEKGQLLAEQLG-FDFFEASAKEN 170 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CeEEEEECCCC
Confidence 999999999999999999999998876533 7899999999999654 5677788888888888 79999999999
Q ss_pred CChHHHHHHHHHHHHhccc
Q 028305 167 CNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~~~~ 185 (210)
.|++++|++|.+.+.+...
T Consensus 171 ~gi~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 171 ISVRQAFERLVDAICDKMS 189 (191)
T ss_dssp BSHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 9999999999999987644
No 37
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=8.9e-34 Score=197.28 Aligned_cols=166 Identities=37% Similarity=0.642 Sum_probs=147.2
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
..+.++|+|+|++|+|||||+++|.+..+...+.++.+.++.......++....+.+|||||++.+......+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 34679999999999999999999999998877788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||++++.++..+..|+..+...... .+|+++|+||+|+.+. +....++...++...+ .+++++||++|.|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~----~~~iilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 155 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNKCDLTDV--REVMERDAKDYADSIH-AIFVETSAKNAIN 155 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCT----TSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEECCccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCcC
Confidence 9999999999999999999888876433 7899999999999754 4566778888888777 8999999999999
Q ss_pred hHHHHHHHHHHHH
Q 028305 169 IDEAFLCVAEIAL 181 (210)
Q Consensus 169 v~~~~~~l~~~~~ 181 (210)
++++|++|.+.+.
T Consensus 156 i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 156 INELFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 38
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=3.6e-34 Score=200.85 Aligned_cols=167 Identities=34% Similarity=0.605 Sum_probs=147.2
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 34679999999999999999999999988888888888888888888999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||++++.++..+..|+..+...... ++|+++|+||+|+.+. +....++...++...+ .+++++||++|.|
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 163 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTDLSDK--RQVSTEEGERKAKELN-VMFIETSAKAGYN 163 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEEEBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCccccc--CcCCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence 9999999999999999999888776433 7899999999999754 4556677888888777 8999999999999
Q ss_pred hHHHHHHHHHHHHh
Q 028305 169 IDEAFLCVAEIALK 182 (210)
Q Consensus 169 v~~~~~~l~~~~~~ 182 (210)
++++|++|.+.+.+
T Consensus 164 i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 164 VKQLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887643
No 39
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=5.6e-34 Score=198.22 Aligned_cols=165 Identities=36% Similarity=0.660 Sum_probs=145.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
+.++|+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999998887778888888888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC-CcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGS-SRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
|+|++++.++..+..|+..+...... ++|+++|+||+|+.+.. .+.+..++...++...+ .+++++||++|.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASK----DIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENV 156 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTTCTTH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999999888876533 78999999999986532 24566777888888877 79999999999999
Q ss_pred HHHHHHHHHHH
Q 028305 170 DEAFLCVAEIA 180 (210)
Q Consensus 170 ~~~~~~l~~~~ 180 (210)
+++|++|.+.+
T Consensus 157 ~~l~~~l~~~i 167 (170)
T 1ek0_A 157 NDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 40
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=203.67 Aligned_cols=173 Identities=21% Similarity=0.251 Sum_probs=141.6
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc-cccccccCC
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQS-LGSAFYRGA 85 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~ 85 (210)
......++|+|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. +...+++.+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 3456789999999999999999999976544433445555666667778899999999999999987664 667778899
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCC
Q 028305 86 DCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKE 165 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (210)
|++|+|||++++.++..+..|+..+...... .++|+++|+||+|+.+. +.+..+++..+++..+ ..++++||++
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sa~~ 171 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPH---HDLPVILVGNKSDLARS--REVSLEEGRHLAGTLS-CKHIETSAAL 171 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTT---SCCCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEEEBTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEeechhcccc--CCcCHHHHHHHHHHhC-CEEEEEcCCC
Confidence 9999999999999999999999888765421 26899999999999764 5567788888888887 7999999999
Q ss_pred CCChHHHHHHHHHHHHhccc
Q 028305 166 DCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~~~ 185 (210)
|.|++++|+++++.+.+.+.
T Consensus 172 ~~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 172 HHNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp TBSHHHHHHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999876543
No 41
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2.2e-34 Score=201.91 Aligned_cols=173 Identities=34% Similarity=0.500 Sum_probs=146.5
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCC-eEEEEEEEeCCCcccccccccccccCCcE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDD-KLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
....++|+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45689999999999999999999999888766777777777777777776 67899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
+++|||++++.+++.+..|+..+........ ..+|+++|+||+|+.+. +....+++..+++..+ .+++++||++|.
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESE-TQPLVALVGNKIDLEHM--RTIKPEKHLRFCQENG-FSSHFVSAKTGD 158 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHT-CCCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEEECTTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccC-CCCeEEEEEEccccccc--cccCHHHHHHHHHHcC-CcEEEEeCCCCC
Confidence 9999999999999999999888876432100 13348999999999653 4566778888888887 899999999999
Q ss_pred ChHHHHHHHHHHHHhccc
Q 028305 168 NIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~~~ 185 (210)
|++++|++|.+.+.+...
T Consensus 159 gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp THHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHhhhh
Confidence 999999999999877654
No 42
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=7.8e-34 Score=200.89 Aligned_cols=169 Identities=35% Similarity=0.582 Sum_probs=144.5
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
+..++|+|+|++|+|||||+++|.+..+...+.++.+ +........++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4689999999999999999999999888766666664 444566778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
+|||++++.+++.+..|+..+...... .++|+++|+||+|+.+ +....++...++...+ .+++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi 153 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDS---EDVPMVLVGNKCDLPS---RTVDTKQAQDLARSYG-IPFIETSAKTRQGV 153 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTC---SCCCEEEEEECTTSSS---CSSCHHHHHHHHHHHT-CCEEECCTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECccCcc---cccCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 999999999999999999988875432 2789999999999974 5566778888888888 89999999999999
Q ss_pred HHHHHHHHHHHHhcccc
Q 028305 170 DEAFLCVAEIALKNEHK 186 (210)
Q Consensus 170 ~~~~~~l~~~~~~~~~~ 186 (210)
+++|++|.+.+.+...+
T Consensus 154 ~~l~~~l~~~~~~~~~~ 170 (189)
T 4dsu_A 154 DDAFYTLVREIRKHKEK 170 (189)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999999877653
No 43
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.4e-34 Score=202.96 Aligned_cols=169 Identities=38% Similarity=0.615 Sum_probs=147.5
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 34678999999999999999999999998877777888888877778888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
+++|||++++.++..+..|+..+...... ++|+++|+||+|+.+. +....+++..+++..+ .+++++||++|.
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 171 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPE----NIVMAIAGNKCDLSDI--REVPLKDAKEYAESIG-AIVVETSAKNAI 171 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHTTT-CEEEECBTTTTB
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCc
Confidence 99999999999999999999988776532 7899999999999643 4566788888888877 899999999999
Q ss_pred ChHHHHHHHHHHHHhc
Q 028305 168 NIDEAFLCVAEIALKN 183 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~ 183 (210)
|++++|++|.+.+.+.
T Consensus 172 gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 172 NIEELFQGISRQIPPL 187 (192)
T ss_dssp SHHHHHHHHHHTCC--
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999877544
No 44
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=6.1e-34 Score=205.56 Aligned_cols=173 Identities=23% Similarity=0.415 Sum_probs=145.0
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
......+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++.+|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3445789999999999999999999999999888788887666 456677788899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC----------CCcccchHHHHHHHHHcCC
Q 028305 87 CCVLVYDVNVQKTFES-LQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG----------SSRVVPQKKALEWCAYRGN 155 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~----------~~~~~~~~~~~~~~~~~~~ 155 (210)
++|+|||++++.++.. +..|+..+..... ++|+++|+||+|+.+. ..+.+..+++..+++..+.
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 175 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYCP-----STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 175 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHCT-----TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence 9999999999999998 6889888887643 7899999999999652 1256778899999999984
Q ss_pred CcEEEecCCCCCC-hHHHHHHHHHHHHhccc
Q 028305 156 IPYFETSAKEDCN-IDEAFLCVAEIALKNEH 185 (210)
Q Consensus 156 ~~~~~~Sa~~~~~-v~~~~~~l~~~~~~~~~ 185 (210)
..++++||++|.| ++++|+++++.+.+...
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 4999999999998 99999999999987655
No 45
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.2e-34 Score=204.81 Aligned_cols=174 Identities=35% Similarity=0.596 Sum_probs=137.2
Q ss_pred cccccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccccccccc
Q 028305 4 SVNMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYR 83 (210)
Q Consensus 4 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (210)
..+......++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++
T Consensus 20 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 99 (199)
T 2p5s_A 20 AKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFR 99 (199)
T ss_dssp --------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHH
T ss_pred cCCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHh
Confidence 34556678899999999999999999999999887777788887887788888998999999999999999998999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC----CCcccchHHHHHHHHHcCCCcEE
Q 028305 84 GADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG----SSRVVPQKKALEWCAYRGNIPYF 159 (210)
Q Consensus 84 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
.+|++|+|||++++.++..+..|+..+...... ++|+++|+||+|+.+. ..+.+..+++..++...+ .+++
T Consensus 100 ~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 174 (199)
T 2p5s_A 100 KADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-ALFC 174 (199)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-CEEE
T ss_pred hCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-CeEE
Confidence 999999999999999999999998888766433 6899999999998521 125566778888888887 7999
Q ss_pred EecCCCCCChHHHHHHHHHHHHh
Q 028305 160 ETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 160 ~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
++||++|.|++++|++|.+.+.+
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHTC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998754
No 46
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=204.62 Aligned_cols=173 Identities=29% Similarity=0.430 Sum_probs=142.6
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGA 85 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (210)
.++....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 45567899999999999999999999999998877777777666 56666677778999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCC
Q 028305 86 DCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKE 165 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (210)
|++++|||++++.+++.+..|+..+..... ..++|+++|+||+|+.+. +.+..++...++...+ .+++++||++
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 170 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHG---KTRVPVVLVGNKADLSPE--REVQAVEGKKLAESWG-ATFMESSARE 170 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECCTTC
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECccCccc--cccCHHHHHHHHHHhC-CeEEEEeCCC
Confidence 999999999999999999999988876532 226899999999999754 5677788888888888 7999999999
Q ss_pred CCChHHHHHHHHHHHHhccc
Q 028305 166 DCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~~~ 185 (210)
|.|++++|++|.+.+.+...
T Consensus 171 ~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 171 NQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999988765
No 47
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.5e-33 Score=200.28 Aligned_cols=173 Identities=38% Similarity=0.631 Sum_probs=149.6
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEE-EEEEEeCCe---------EEEEEEEeCCCccccccc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFV-TKELQMDDK---------LVTLQIWDTAGQERFQSL 77 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~~~~~ 77 (210)
..+..++|+|+|++|+|||||+++|.++.+...+.++.+.++. ...+..++. .+.+.+|||||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4567899999999999999999999998888777788877776 556666655 789999999999999999
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCc
Q 028305 78 GSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIP 157 (210)
Q Consensus 78 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
...+++.+|++|+|||++++.++..+..|+..+...... .++|+++|+||+|+.+. +....+++..++...+ .+
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~ 160 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS---ENPDIVLCGNKSDLEDQ--RAVKEEEARELAEKYG-IP 160 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS---SSCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CC
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CC
Confidence 999999999999999999999999999999888776531 27899999999999653 4566778888888887 79
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhcccc
Q 028305 158 YFETSAKEDCNIDEAFLCVAEIALKNEHK 186 (210)
Q Consensus 158 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 186 (210)
++++||++|.|++++|++|.+.+.+...+
T Consensus 161 ~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 161 YFETSAANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999876553
No 48
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.2e-33 Score=196.60 Aligned_cols=166 Identities=22% Similarity=0.264 Sum_probs=131.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc-cccccccCCcEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQS-LGSAFYRGADCCVL 90 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~vi~ 90 (210)
.+||+++|++|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+|||||++.+.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999997777666666666777788888999999999999999988876 66777888999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|||++++.+++.+..|+..+...... .++|+++|+||+|+.+. +....++...+++..+ .+++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 155 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPH---HDLPVILVGNKSDLARS--REVSLEEGRHLAGTLS-CKHIETSAALHHNTR 155 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTT---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBSHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccC---CCCCEEEEeeCcchhhc--ccCCHHHHHHHHHHcC-CcEEEecCccCCCHH
Confidence 99999999999999999988876532 26899999999999754 5677888888998888 799999999999999
Q ss_pred HHHHHHHHHHHhc
Q 028305 171 EAFLCVAEIALKN 183 (210)
Q Consensus 171 ~~~~~l~~~~~~~ 183 (210)
++|+++.+.+...
T Consensus 156 ~l~~~l~~~i~~~ 168 (169)
T 3q85_A 156 ELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 49
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=201.06 Aligned_cols=174 Identities=26% Similarity=0.427 Sum_probs=139.3
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
......++|+|+|++|+|||||+++|.+..+...+.++++..+ ...+..++..+.+.+|||||++.+...+..+++.+|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 3456799999999999999999999998887777777765444 456777888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC----------CcccchHHHHHHHHHcCC
Q 028305 87 CCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGS----------SRVVPQKKALEWCAYRGN 155 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~----------~~~~~~~~~~~~~~~~~~ 155 (210)
++++|||++++.++..+. .|+..+..... ++|+++|+||+|+.+.. .+.+..++...++...+.
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-----KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA 168 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-----SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC
Confidence 999999999999999986 78888877643 78999999999996531 245667788888888885
Q ss_pred CcEEEecCCCCCChHHHHHHHHHHHHhcccc
Q 028305 156 IPYFETSAKEDCNIDEAFLCVAEIALKNEHK 186 (210)
Q Consensus 156 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 186 (210)
.+++++||++|.|++++|++|.+.+.+.+.+
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence 5999999999999999999999999877654
No 50
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=199.80 Aligned_cols=170 Identities=23% Similarity=0.393 Sum_probs=139.6
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
..+...+||+|+|++|+|||||+++|+++.+...+.++.+..+ .....+++..+.+.+|||+|++.+... ..+++.+|
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 3456789999999999999999999999988877777777665 455677888899999999999988774 67889999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecC-CC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSA-KE 165 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~ 165 (210)
++++|||++++.+++.+..|+..+...... ...++|+++|+||+|+.+. +.+..+++..+++..+ ..++++|| ++
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~ 169 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKE-TQRSIPALLLGNKLDMAQY--RQVTKAEGVALAGRFG-CLFFEVSACLD 169 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECCSSSC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEECcchhhc--CccCHHHHHHHHHHcC-CcEEEEeecCc
Confidence 999999999999999999999988775310 0017799999999999654 5567788899998888 79999999 89
Q ss_pred CCChHHHHHHHHHHHHh
Q 028305 166 DCNIDEAFLCVAEIALK 182 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~ 182 (210)
|.|++++|+.|++.+.+
T Consensus 170 g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 170 FEHVQHVFHEAVREARR 186 (187)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHhh
Confidence 99999999999998754
No 51
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=3.6e-33 Score=199.90 Aligned_cols=168 Identities=32% Similarity=0.576 Sum_probs=146.2
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeE--------------------------
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKL-------------------------- 60 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 60 (210)
|.++..++|+|+|++|+|||||+++|++..+...+.++.+.++....+..++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 456778999999999999999999999998887888888888877777776655
Q ss_pred -----------EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEe
Q 028305 61 -----------VTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGN 129 (210)
Q Consensus 61 -----------~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~ 129 (210)
..+.+|||||++.+......+++.+|++++|+|++++.++..+..|+..+.... ++|+++|+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~------~~piilv~N 155 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS------NYIIILVAN 155 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------CCEEEEEEE
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC------CCcEEEEEE
Confidence 889999999999999999999999999999999999999999999988887754 379999999
Q ss_pred cCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHHHhcc
Q 028305 130 KIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 130 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
|+|+ .. +....+++..+++..+ .+++++||++|.|++++|++|.+.+.+..
T Consensus 156 K~D~-~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 156 KIDK-NK--FQVDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CTTC-C---CCSCHHHHHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCc-cc--ccCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 9993 22 5667788888998887 79999999999999999999999987653
No 52
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.5e-33 Score=199.76 Aligned_cols=168 Identities=36% Similarity=0.642 Sum_probs=143.8
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc-ccccccccCCcE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ-SLGSAFYRGADC 87 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~ 87 (210)
....++|+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++++. ..+..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 4567999999999999999999999999887788888888888888889988999999999999888 788889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC-
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED- 166 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~- 166 (210)
+|+|||++++.++..+..|+..+...... .++|+++|+||+|+.+. +....++...++...+ .+++++||++|
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 170 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLA---NDIPRILVGNKCDLRSA--IQVPTDLAQKFADTHS-MPLFETSAKNPN 170 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEEECCSSSGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--ceeCHHHHHHHHHHcC-CEEEEEeCCcCC
Confidence 99999999999999999999988876522 27899999999999654 4566778888888877 79999999999
Q ss_pred --CChHHHHHHHHHHHHh
Q 028305 167 --CNIDEAFLCVAEIALK 182 (210)
Q Consensus 167 --~~v~~~~~~l~~~~~~ 182 (210)
.|++++|++|++.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999887754
No 53
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.9e-33 Score=195.10 Aligned_cols=165 Identities=33% Similarity=0.569 Sum_probs=142.5
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
+.++|+++|++|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999888777777776555 3556677888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|||++++.+++.+..|+..+...... .++|+++|+||+|+.+. +....+++..+++..+..+++++||++|.|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDT---EDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWCNCAFLESSAKSKINVN 155 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCc---CCCcEEEEEECcccccc--ccCCHHHHHHHHHHccCCcEEEecCCCCCCHH
Confidence 99999999999999998888775432 27899999999999754 45667788888888755899999999999999
Q ss_pred HHHHHHHHHHH
Q 028305 171 EAFLCVAEIAL 181 (210)
Q Consensus 171 ~~~~~l~~~~~ 181 (210)
++|++|.+.+.
T Consensus 156 ~l~~~l~~~i~ 166 (167)
T 1c1y_A 156 EIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998774
No 54
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-33 Score=198.01 Aligned_cols=169 Identities=25% Similarity=0.428 Sum_probs=145.0
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
.....++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++++...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 345789999999999999999999999988777777776554 4556777888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC----------CcccchHHHHHHHHHcCCC
Q 028305 88 CVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGS----------SRVVPQKKALEWCAYRGNI 156 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~----------~~~~~~~~~~~~~~~~~~~ 156 (210)
+++|||++++.++..+. .|+..+..... ++|+++|+||+|+.+.. .+.+..+++..+++..+..
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 167 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYAP-----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC 167 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence 99999999999999987 78888877643 78999999999997641 1356678888899888855
Q ss_pred cEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 157 PYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 157 ~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
+++++||++|.|++++|++|.+.++.
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999998763
No 55
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=195.61 Aligned_cols=169 Identities=27% Similarity=0.360 Sum_probs=132.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc--ccccccccccCCcE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER--FQSLGSAFYRGADC 87 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~d~ 87 (210)
...++|+|+|++|+|||||+++|.+..+...+ ++.+.+.....+.+++..+.+.+|||||++. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 35799999999999999999999988776433 3444556667778888889999999999887 45666778889999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
+++|||++++.+++.+..|+..+..... ..++|+++|+||+|+.+. +.+..++...++...+ .+++++||++|.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQ---ADHVPIILVGNKADLARC--REVSVEEGRACAVVFD-CKFIETSATLQH 154 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC-------CCEEEEEECTTCTTT--CCSCHHHHHHHHHHHT-SEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhc---cCCCCEEEEEEChhhccc--cccCHHHHHHHHHHcC-CeEEEEecCCCC
Confidence 9999999999999999999888876422 126899999999999765 4566677788888777 899999999999
Q ss_pred ChHHHHHHHHHHHHhccc
Q 028305 168 NIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~~~ 185 (210)
|++++|++|.+.+.+.+.
T Consensus 155 gi~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 155 NVAELFEGVVRQLRLRRR 172 (175)
T ss_dssp SHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 999999999999877654
No 56
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=5.3e-33 Score=200.30 Aligned_cols=169 Identities=38% Similarity=0.717 Sum_probs=148.3
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45679999999999999999999999988877888888888888888889889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||++++.+++.+..|+..+...... ++|+++|+||+|+.. +....++...++...+ .+++++||++|.|
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 168 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDN 168 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTT----CSEEEEEEECTTCSS---CCSCHHHHHHHHHHHT-CCEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCcc---cccCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 9999999999999999999888776543 689999999999943 4566677888888877 7999999999999
Q ss_pred hHHHHHHHHHHHHhccc
Q 028305 169 IDEAFLCVAEIALKNEH 185 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~ 185 (210)
++++|++|.+.+.+...
T Consensus 169 i~~l~~~l~~~~~~~~~ 185 (213)
T 3cph_A 169 VNEIFFTLAKLIQEKID 185 (213)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999877654
No 57
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-33 Score=201.35 Aligned_cols=170 Identities=22% Similarity=0.449 Sum_probs=143.8
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+......+++.+|
T Consensus 23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 101 (205)
T 1gwn_A 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 101 (205)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence 3456789999999999999999999999988877777776665 455677888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC----------CCcccchHHHHHHHHHcCC
Q 028305 87 CCVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKIDTDGG----------SSRVVPQKKALEWCAYRGN 155 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~----------~~~~~~~~~~~~~~~~~~~ 155 (210)
++|+|||++++.+++.+ ..|+..+..... ++|+++|+||+|+.+. ..+.+..+++..+++..+.
T Consensus 102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (205)
T 1gwn_A 102 AVLICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGA 176 (205)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCC
Confidence 99999999999999998 688888876643 7899999999999642 1245677888899988876
Q ss_pred CcEEEecCC-CCCChHHHHHHHHHHHHh
Q 028305 156 IPYFETSAK-EDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 156 ~~~~~~Sa~-~~~~v~~~~~~l~~~~~~ 182 (210)
..++++||+ +|.|++++|+.+++.+++
T Consensus 177 ~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 177 ATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 799999999 689999999999999875
No 58
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=202.39 Aligned_cols=171 Identities=30% Similarity=0.522 Sum_probs=124.8
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
....++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 45689999999999999999999998888766666665444 45667888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC----------CcccchHHHHHHHHHcCCCc
Q 028305 89 VLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGS----------SRVVPQKKALEWCAYRGNIP 157 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~----------~~~~~~~~~~~~~~~~~~~~ 157 (210)
++|||++++.+++.+. .|+..+..... ++|+++|+||+|+.+.. .+.+..+++..+++..+...
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 184 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFCK-----KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVA 184 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCE
Confidence 9999999999999986 78888876643 78999999999997542 12456678888888888559
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 158 YFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 158 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
++++||++|.|++++|++|.+.+.+...
T Consensus 185 ~~~~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 185 YLECSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999987754
No 59
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=2.7e-33 Score=197.59 Aligned_cols=168 Identities=22% Similarity=0.458 Sum_probs=143.5
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
+...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+......+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 56789999999999999999999999988877777776655 34567788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC----------CCcccchHHHHHHHHHcCCCc
Q 028305 89 VLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKIDTDGG----------SSRVVPQKKALEWCAYRGNIP 157 (210)
Q Consensus 89 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~----------~~~~~~~~~~~~~~~~~~~~~ 157 (210)
++|||++++.+++.+ ..|+..+..... ++|+++|+||+|+.+. ..+.+..+++..+++..+..+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 157 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence 999999999999998 688888876543 7899999999999642 124567788888998887679
Q ss_pred EEEecCC-CCCChHHHHHHHHHHHHh
Q 028305 158 YFETSAK-EDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 158 ~~~~Sa~-~~~~v~~~~~~l~~~~~~ 182 (210)
++++||+ +|.|++++|+.+.+.+++
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 9999999 689999999999998875
No 60
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.2e-33 Score=199.10 Aligned_cols=172 Identities=26% Similarity=0.453 Sum_probs=144.2
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGA 85 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (210)
++.....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++. ...+..+++.+
T Consensus 22 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ 99 (196)
T 2atv_A 22 SMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWG 99 (196)
T ss_dssp -----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHC
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccC
Confidence 44566789999999999999999999999988877777776555 45567788889999999999887 67778888999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCC
Q 028305 86 DCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKE 165 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (210)
|++++|||++++.+++.+..|+..+...... .++|+++|+||+|+.+. +....+++..+++..+ .+++++||++
T Consensus 100 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 173 (196)
T 2atv_A 100 EGFVLVYDITDRGSFEEVLPLKNILDEIKKP---KNVTLILVGNKADLDHS--RQVSTEEGEKLATELA-CAFYECSACT 173 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SEEEECCTTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhhCC---CCCcEEEEEECcccccc--cccCHHHHHHHHHHhC-CeEEEECCCc
Confidence 9999999999999999999998888775431 27899999999999754 4566788888888887 8999999999
Q ss_pred CC-ChHHHHHHHHHHHHhccc
Q 028305 166 DC-NIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 166 ~~-~v~~~~~~l~~~~~~~~~ 185 (210)
|. |++++|++|++.+.+.+.
T Consensus 174 g~~gi~~l~~~l~~~i~~~~~ 194 (196)
T 2atv_A 174 GEGNITEIFYELCREVRRRRM 194 (196)
T ss_dssp CTTCHHHHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHHhhcc
Confidence 99 999999999999987654
No 61
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=6.3e-33 Score=195.75 Aligned_cols=170 Identities=26% Similarity=0.478 Sum_probs=144.3
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...++|+++|++|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+|||||++.+......+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4679999999999999999999999888777767665444 455677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC----------CcccchHHHHHHHHHcCCCcE
Q 028305 90 LVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGS----------SRVVPQKKALEWCAYRGNIPY 158 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 158 (210)
+|||++++.++..+. .|+..+..... ++|+++|+||+|+.+.. .+.+..++...+++..+..++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 156 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-----CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 999999999999987 68888876543 67999999999986531 134566778888888884599
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 159 FETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 159 ~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
+++||++|.|++++|+++.+.+.+...
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 157 LECSALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred EEecCCCccCHHHHHHHHHHHHhcccc
Confidence 999999999999999999999876544
No 62
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.2e-33 Score=204.34 Aligned_cols=172 Identities=40% Similarity=0.660 Sum_probs=146.7
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCe----------EEEEEEEeCCCccccccc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDK----------LVTLQIWDTAGQERFQSL 77 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~ 77 (210)
..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++. .+.+.+|||||++.+...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 3467899999999999999999999998888777788887777777776665 789999999999999999
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCc
Q 028305 78 GSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIP 157 (210)
Q Consensus 78 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
+..+++.+|++|+|||++++.++..+..|+..+..... ..++|+++|+||+|+.+. +....+++..+++..+ .+
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~---~~~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~ 174 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY---CENPDIVLIGNKADLPDQ--REVNERQARELADKYG-IP 174 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCT---TTCCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CC
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---cCCCCEEEEEECCccccc--cccCHHHHHHHHHHCC-Cc
Confidence 99999999999999999999999998888776643321 137899999999999654 4566788888888887 89
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 158 YFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 158 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
++++||++|.|++++|++|.+.+.+...
T Consensus 175 ~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 175 YFETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999987654
No 63
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=6.3e-33 Score=192.38 Aligned_cols=164 Identities=23% Similarity=0.325 Sum_probs=120.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLV 91 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v 91 (210)
.+||+++|++|+|||||+++|.+...... .++.+..+ .....+++..+.+.+||++|++.+......+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999987665422 23333333 45667888999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHH
Q 028305 92 YDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDE 171 (210)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (210)
||++++.+++.+..|+..+...... .++|+++|+||+|+.+. +....++...++...+ .+++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQT---DDVPIILVGNKSDLVRS--REVSVDEGRACAVVFD-CKFIETSAALHHNVQA 153 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC------CCCEEEEEECTTCCSS--CCSCHHHHHHHHHHTT-CEEEECBGGGTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEeccccccc--cccCHHHHHHHHHHhC-CcEEEeccCCCCCHHH
Confidence 9999999999999999888764321 27899999999999765 5677788888888887 8999999999999999
Q ss_pred HHHHHHHHHHhc
Q 028305 172 AFLCVAEIALKN 183 (210)
Q Consensus 172 ~~~~l~~~~~~~ 183 (210)
+|++|.+.+.+.
T Consensus 154 l~~~l~~~~~~~ 165 (166)
T 3q72_A 154 LFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
No 64
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=7.9e-33 Score=191.94 Aligned_cols=165 Identities=31% Similarity=0.578 Sum_probs=140.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
..++|+++|++|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+|||||++++...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 469999999999999999999999888776666665554 4556778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|||++++.++..+..|+..+...... .++|+++|+||+|+.+. +....+++..+++..+ .+++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 155 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKED---ENVPFLLVGNKSDLEDK--RQVSVEEAKNRADQWN-VNYVETSAKTRANVD 155 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCC---TTSCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECcccccc--CccCHHHHHHHHHHcC-CeEEEeCCCCCCCHH
Confidence 99999999999999999888876542 26899999999999754 4566778888888887 799999999999999
Q ss_pred HHHHHHHHHHHh
Q 028305 171 EAFLCVAEIALK 182 (210)
Q Consensus 171 ~~~~~l~~~~~~ 182 (210)
++|+++.+.+.+
T Consensus 156 ~l~~~l~~~i~~ 167 (168)
T 1u8z_A 156 KVFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=7.5e-33 Score=195.43 Aligned_cols=170 Identities=30% Similarity=0.558 Sum_probs=145.7
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++++...+..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 45689999999999999999999999888777666665554 45567788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|||++++.++..+..|+..+...... .++|+++|+||+|+.+. +....+++..+++..+ .+++++||++|.|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 167 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKED---ENVPFLLVGNKSDLEDK--RQVSVEEAKNRAEQWN-VNYVETSAKTRAN 167 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCC---TTCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--CccCHHHHHHHHHHcC-CeEEEeCCCCCCC
Confidence 9999999999999999999888876542 26799999999999654 4566778888888887 7999999999999
Q ss_pred hHHHHHHHHHHHHhccc
Q 028305 169 IDEAFLCVAEIALKNEH 185 (210)
Q Consensus 169 v~~~~~~l~~~~~~~~~ 185 (210)
++++|++|.+.+.+.+.
T Consensus 168 i~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 168 VDKVFFDLMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999987654
No 66
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.5e-33 Score=199.15 Aligned_cols=171 Identities=22% Similarity=0.319 Sum_probs=136.3
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcC--CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc-ccccccccccC
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKF--SQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER-FQSLGSAFYRG 84 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~ 84 (210)
.....+||+|+|++|+|||||+++|++... ...+ ++++.++....+.+++..+.+.+|||+|... +..+...+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 446689999999999999999999996433 3332 3455666677778899889999999999776 44556677889
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCC
Q 028305 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK 164 (210)
Q Consensus 85 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (210)
+|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+. +.+..++...++...+ .+++++||+
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~---~~~~piilVgNK~DL~~~--r~v~~~e~~~~a~~~~-~~~~e~SAk 185 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQ---TEDIPIILVGNKSDLVRC--REVSVSEGRACAVVFD-CKFIETSAA 185 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGG---GTTSCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCcEEEEEEChHHhcC--ceEeHHHHHHHHHHcC-CEEEEEeCC
Confidence 9999999999999999999999887765321 126899999999999653 4566677777887777 799999999
Q ss_pred CCCChHHHHHHHHHHHHhccc
Q 028305 165 EDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 165 ~~~~v~~~~~~l~~~~~~~~~ 185 (210)
+|.|++++|++|++.+...+.
T Consensus 186 ~g~~v~elf~~l~~~i~~~~~ 206 (211)
T 2g3y_A 186 VQHNVKELFEGIVRQVRLRRD 206 (211)
T ss_dssp TTBSHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999865543
No 67
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=6.4e-33 Score=192.24 Aligned_cols=165 Identities=32% Similarity=0.543 Sum_probs=142.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
..++|+|+|++|+|||||+++|.++.+...+.++.+... .....+++..+.+.+|||||++.+......+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 468999999999999999999999888776666665443 5667788888999999999999999888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|||++++.+++.+..|+..+...... .++|+++|+||+|+.+. +....++...+++..+ .+++++||++|.|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 154 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRY---EKVPVILVGNKVDLESE--REVSSSEGRALAEEWG-CPFMETSAKSKTMVD 154 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SCEEEECTTCHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECCccccc--ccCCHHHHHHHHHHhC-CCEEEecCCCCcCHH
Confidence 99999999999999998888776432 27899999999998653 4566777888888887 799999999999999
Q ss_pred HHHHHHHHHHHh
Q 028305 171 EAFLCVAEIALK 182 (210)
Q Consensus 171 ~~~~~l~~~~~~ 182 (210)
++|++|.+.+.+
T Consensus 155 ~l~~~l~~~~~~ 166 (167)
T 1kao_A 155 ELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 68
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.1e-33 Score=203.11 Aligned_cols=172 Identities=28% Similarity=0.455 Sum_probs=111.9
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhC--cCCCcccceeeeEEEEEEEEeCCe--EEEEEEEeCCCcccccccccccccCC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYN--KFSQQYKATIGADFVTKELQMDDK--LVTLQIWDTAGQERFQSLGSAFYRGA 85 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (210)
...++|+|+|++|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56799999999999999999999988 777677777777777778888876 78999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCC-CCCcccchHHHHHHHHHcCCCcEEEecCC
Q 028305 86 DCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDG-GSSRVVPQKKALEWCAYRGNIPYFETSAK 164 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (210)
|++|+|||++++.+++.+..|+..+...... ...++|+++|+||+|+.+ . +.+..+++..+++..+ .+++++||+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~ 173 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPD-RERPLRAVLVANKTDLPPQR--HQVRLDMAQDWATTNT-LDFFDVSAN 173 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSC-TTSCCEEEEEEECC---------CCCHHHHHHHHHHTT-CEEEECCC-
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcc-cccCCcEEEEEECcccchhh--ccCCHHHHHHHHHHcC-CEEEEeccC
Confidence 9999999999999999999999998876541 012789999999999976 3 5566788889998888 899999999
Q ss_pred C-CCChHHHHHHHHHHHHhccc
Q 028305 165 E-DCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 165 ~-~~~v~~~~~~l~~~~~~~~~ 185 (210)
+ |.|++++|++|.+.+.+...
T Consensus 174 ~~~~gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 174 PPGKDADAPFLSIATTFYRNYE 195 (208)
T ss_dssp ------CHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999887654
No 69
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=2.2e-32 Score=195.60 Aligned_cols=167 Identities=25% Similarity=0.492 Sum_probs=142.8
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...+||+|+|++|+|||||+++|.+..+...+.++.+.++. ..+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 56899999999999999999999999888777777766654 34677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC----------cccchHHHHHHHHHcCCCcE
Q 028305 90 LVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS----------RVVPQKKALEWCAYRGNIPY 158 (210)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 158 (210)
+|||++++.++..+ ..|...+..... ++|+++|+||+|+.+... +.+..+++..+++..+...+
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 176 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence 99999999999998 577777766543 789999999999976421 34566788888888885589
Q ss_pred EEecCCCCCChHHHHHHHHHHHHh
Q 028305 159 FETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 159 ~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
+++||++|.|++++|++|.+.+++
T Consensus 177 ~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 177 LECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999998764
No 70
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=7.9e-32 Score=190.93 Aligned_cols=170 Identities=32% Similarity=0.543 Sum_probs=134.2
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
+....++|+++|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++++...+..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 345789999999999999999999998887766666665444 4566778888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDC 167 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (210)
+++|||++++.++..+..|+..+...... .++|+++|+||+|+.+ +....+++..+++..+ .+++++||++|.
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 168 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDS---DDVPMVLVGNKCDLPT---RTVDTKQAHELAKSYG-IPFIETSAKTRQ 168 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTC---SCCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECCcCCc---ccCCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 99999999999999999998888766431 2679999999999975 4456778888888888 799999999999
Q ss_pred ChHHHHHHHHHHHHhccc
Q 028305 168 NIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 168 ~v~~~~~~l~~~~~~~~~ 185 (210)
|++++|++|.+.+.+.+.
T Consensus 169 gi~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 169 GVEDAFYTLVREIRQYRM 186 (190)
T ss_dssp THHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999987654
No 71
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.5e-32 Score=195.40 Aligned_cols=171 Identities=26% Similarity=0.465 Sum_probs=139.1
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
.....++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence 3456899999999999999999999999888777777766554 346778888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC----------cccchHHHHHHHHHcCCC
Q 028305 88 CVLVYDVNVQKTFESL-QNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS----------RVVPQKKALEWCAYRGNI 156 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~----------~~~~~~~~~~~~~~~~~~ 156 (210)
+++|||++++.++..+ ..|+..+..... ++|+++|+||+|+.+... +.+..++...++...+..
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 174 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHFCP-----NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAY 174 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCC
Confidence 9999999999999988 678777776543 789999999999965311 235667788888888855
Q ss_pred cEEEecCCCCCChHHHHHHHHHHHHhcc
Q 028305 157 PYFETSAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 157 ~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
.++++||++|.|++++|++|.+.+++..
T Consensus 175 ~~~~~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 175 DYLECSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999987653
No 72
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=1.2e-32 Score=197.32 Aligned_cols=168 Identities=26% Similarity=0.464 Sum_probs=139.0
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
......+||+|+|++|+|||||+++|+.+.+...+.++.+ +.....+.+++..+.+.+|||||++.+......+++.+|
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTD 103 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence 3456789999999999999999999999888777766664 444566677888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC----------cccchHHHHHHHHHcCC
Q 028305 87 CCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS----------RVVPQKKALEWCAYRGN 155 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~----------~~~~~~~~~~~~~~~~~ 155 (210)
++++|||++++.+++.+. .|+..+..... ++|+++|+||+|+.+... +.+..+++..+++..+.
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 178 (204)
T 4gzl_A 104 VFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 178 (204)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCC
Confidence 999999999999999987 78888877652 789999999999865421 22667788889998886
Q ss_pred CcEEEecCCCCCChHHHHHHHHHHH
Q 028305 156 IPYFETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 156 ~~~~~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
.+++++||++|.|++++|++|.+.+
T Consensus 179 ~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 179 VKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 7799999999999999999998764
No 73
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=1.7e-33 Score=198.12 Aligned_cols=169 Identities=30% Similarity=0.532 Sum_probs=125.9
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
+.....++|+++|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||||++++...+..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 81 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence 44567899999999999999999999998887666666654332 23445666788899999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC--------cccchHHHHHHHHHcCCCc
Q 028305 87 CCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS--------RVVPQKKALEWCAYRGNIP 157 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~--------~~~~~~~~~~~~~~~~~~~ 157 (210)
++++|||++++.+++.+. .|+..+..... ++|+++|+||+|+.+... ..+..+++..+++..+..+
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 156 (182)
T 3bwd_D 82 VFILAFSLISKASYENVSKKWIPELKHYAP-----GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPA 156 (182)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCE
Confidence 999999999999999987 68888877643 789999999999865411 1236677888888888559
Q ss_pred EEEecCCCCCChHHHHHHHHHHHH
Q 028305 158 YFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 158 ~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
++++||++|.|++++|++|.+.++
T Consensus 157 ~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 157 YIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999998875
No 74
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.5e-32 Score=198.78 Aligned_cols=173 Identities=32% Similarity=0.520 Sum_probs=143.9
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD-DKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
.+...+||+|+|++|+|||||+++|+++.+...+.++.+........... +..+.+.+|||||++.+......++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 35678999999999999999999999888877767777666655555443 44488999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
++|+|||++++.++..+..|+..+...... ++|+++|+||+|+.+. +....++...++...+ .+++++||++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 159 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKIDIKNR--QKISKKLVMEVLKGKN-YEYFEISAKTA 159 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCS----SSCEEEEEECTTCC------CCHHHHHHHTTTCC-CEEEEEBTTTT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CcEEEEecCCC
Confidence 999999999999999999999998877543 5899999999999764 4566777777877776 89999999999
Q ss_pred CChHHHHHHHHHHHHhccccc
Q 028305 167 CNIDEAFLCVAEIALKNEHKD 187 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~~~~~~ 187 (210)
.|++++|++|.+.+.+...+.
T Consensus 160 ~gv~~l~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 160 HNFGLPFLHLARIFTGRPDLI 180 (218)
T ss_dssp BTTTHHHHHHHHHHHCCTTCC
T ss_pred CCHHHHHHHHHHHHhcccccc
Confidence 999999999999998776543
No 75
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=6.4e-33 Score=201.12 Aligned_cols=172 Identities=26% Similarity=0.609 Sum_probs=148.7
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGA 85 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (210)
.......+||+|+|++|+|||||+++|+.+.+...+.++.+.+........++..+.+.+|||||++.+...+..+++.+
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 34456789999999999999999999887777777777887888888888899999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCC
Q 028305 86 DCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKE 165 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (210)
|++++|||++++.++..+..|+..+..... ++|+++|+||+|+.+... ..+...+++..+ ..++++||++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~-~~~~~~Sa~~ 158 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKDRKV----KAKSIVFHRKKN-LQYYDISAKS 158 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHST-----TCCEEEEEECTTSSSCSS----CGGGCCHHHHHT-CEEEECBGGG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCccccccc----cHHHHHHHHHcC-CEEEEEeCCC
Confidence 999999999999999999999999988753 789999999999976422 224455666666 8999999999
Q ss_pred CCChHHHHHHHHHHHHhccccc
Q 028305 166 DCNIDEAFLCVAEIALKNEHKD 187 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~~~~~ 187 (210)
|.|++++|++|.+.+.......
T Consensus 159 ~~gi~~l~~~l~~~l~~~~~~~ 180 (221)
T 3gj0_A 159 NYNFEKPFLWLARKLIGDPNLE 180 (221)
T ss_dssp TBTTTHHHHHHHHHHHTCTTCC
T ss_pred CCCHHHHHHHHHHHHHhCcccc
Confidence 9999999999999998876543
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=2.1e-33 Score=200.02 Aligned_cols=174 Identities=19% Similarity=0.240 Sum_probs=137.0
Q ss_pred CccccccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcc-----------cceeeeEEEEEEE-EeCCeEEEEEEEeCC
Q 028305 2 DISVNMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQY-----------KATIGADFVTKEL-QMDDKLVTLQIWDTA 69 (210)
Q Consensus 2 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~ 69 (210)
...........+||+|+|++|+|||||++.+.+ .+...+ .++.+.++..... ..++..+.+.+||||
T Consensus 4 ~~~~~~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~ 82 (198)
T 3t1o_A 4 STINFANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVP 82 (198)
T ss_dssp CEEETTTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECC
T ss_pred cccchhccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCC
Confidence 333445567899999999999999999966654 444332 2344444444434 556778899999999
Q ss_pred CcccccccccccccCCcEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccch
Q 028305 70 GQERFQSLGSAFYRGADCCVLVYDVN------VQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQ 143 (210)
Q Consensus 70 g~~~~~~~~~~~~~~~d~vi~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~ 143 (210)
|++.+...+..+++.+|++|+|||++ +..++..+..|+..+.. ...++|+++|+||+|+.+. ...
T Consensus 83 G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-----~~~~~piilv~NK~Dl~~~----~~~ 153 (198)
T 3t1o_A 83 GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-----TLDDVPIVIQVNKRDLPDA----LPV 153 (198)
T ss_dssp SCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-----CTTSSCEEEEEECTTSTTC----CCH
T ss_pred ChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-----ccCCCCEEEEEEchhcccc----cCH
Confidence 99999999999999999999999999 45667777777666522 1237899999999999753 667
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 144 KKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
+++..+++..+..+++++||++|.|++++|++|.+.+.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 154 EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp HHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 888888888883399999999999999999999999988765
No 77
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.9e-35 Score=207.69 Aligned_cols=170 Identities=38% Similarity=0.697 Sum_probs=139.9
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
...+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 107 (199)
T 3l0i_B 28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 107 (199)
T ss_dssp CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence 34567899999999999999999999998888777888888888888889998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
++|+|||++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....++...++...+ .+++++||++|
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~vSA~~g 180 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLTTK--KVVDYTTAKEFADSLG-IPFLETSAKNA 180 (199)
T ss_dssp EEEECC-CCCSHHHHHHHHHHHHHHSCC-C----CSEEEEC-CCSSCC----CCCCSCC-CHHHHTTT-CCBCCCCC---
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccC----CCCEEEEEECccCCcc--ccCCHHHHHHHHHHcC-CeEEEEECCCC
Confidence 999999999999999999999888665432 7899999999999754 4455566777888777 89999999999
Q ss_pred CChHHHHHHHHHHHHhc
Q 028305 167 CNIDEAFLCVAEIALKN 183 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~~ 183 (210)
.|++++|++|.+.+.+.
T Consensus 181 ~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 181 TNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHHTTTTTTT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999998876543
No 78
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=2.4e-31 Score=184.05 Aligned_cols=164 Identities=32% Similarity=0.574 Sum_probs=140.3
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
..++|+++|++|+|||||+++|.+..+...+.++.+... ......++..+.+.+|||||++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 358999999999999999999998888766666665443 5566778888999999999999988888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|||++++.++..+..|+..+...... .++|+++|+||+|+.+ +....++...+++..+ .+++++||++|.|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~---~~~p~iiv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 153 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDS---DDVPMVLVGNKSDLAA---RTVESRQAQDLARSYG-IPYIETSAKTRQGVE 153 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTC---SCCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEEECTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEEchhhhh---cccCHHHHHHHHHHcC-CeEEEecCCCCCCHH
Confidence 99999999999999998888776432 2679999999999976 3456677888888887 799999999999999
Q ss_pred HHHHHHHHHHHh
Q 028305 171 EAFLCVAEIALK 182 (210)
Q Consensus 171 ~~~~~l~~~~~~ 182 (210)
++|++|.+.+.+
T Consensus 154 ~l~~~l~~~~~~ 165 (166)
T 2ce2_X 154 DAFYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 79
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-32 Score=189.75 Aligned_cols=166 Identities=28% Similarity=0.448 Sum_probs=138.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
..++|+++|++|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+|||||++++......+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999888766666665444 3455677888899999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
|||++++.+++.+..|+..+...... ..++|+++|+||+|+.+. +....++...++...+ .+++++||++|.|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~pii~v~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 155 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGD--VESIPIMLVGNKCDESPS--REVQSSEAEALARTWK-CAFMETSAKLNHNVK 155 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEEccccccc--cccCHHHHHHHHHHhC-CeEEEecCCCCcCHH
Confidence 99999999999988888888765431 126799999999999654 4455667777887777 799999999999999
Q ss_pred HHHHHHHHHHHh
Q 028305 171 EAFLCVAEIALK 182 (210)
Q Consensus 171 ~~~~~l~~~~~~ 182 (210)
++|++|.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (172)
T 2erx_A 156 ELFQELLNLEKR 167 (172)
T ss_dssp HHHHHHHHTCCS
T ss_pred HHHHHHHHHHhh
Confidence 999999886543
No 80
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=3.3e-31 Score=188.16 Aligned_cols=168 Identities=22% Similarity=0.336 Sum_probs=132.6
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCc--CCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc-ccccccccccCCc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNK--FSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER-FQSLGSAFYRGAD 86 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d 86 (210)
...+||+++|++|+|||||+++|++.. +...+ ++++.++....+.+++..+.+.+|||+|... ...+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999999633 33332 3355566667778899989999999999765 4456677788899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCC
Q 028305 87 CCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKED 166 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (210)
++++|||++++.+|+.+..|+..+...... .++|+++|+||+|+.+. +.+..+++..++...+ .+++++||++|
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~---~~~piilV~NK~Dl~~~--r~v~~~~~~~~a~~~~-~~~~e~SA~~g 156 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQT---EDIPIILVGNKSDLVRX--REVSVSEGRAXAVVFD-XKFIETSAAVQ 156 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCeEEEEEechhhhcc--ccccHHHHHHHHHHhC-CceEEeccccC
Confidence 999999999999999999998877765321 26899999999998653 4556677777777776 78999999999
Q ss_pred CChHHHHHHHHHHHHhcc
Q 028305 167 CNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~~~ 184 (210)
.|++++|+++++.+....
T Consensus 157 ~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 157 HNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp BSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc
Confidence 999999999999986543
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=3.7e-31 Score=188.68 Aligned_cols=175 Identities=21% Similarity=0.329 Sum_probs=129.2
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcCCC-cccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccC
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQ-QYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG 84 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (210)
.......++|+|+|++|+|||||+++|++..+.. .+.++.+... ..+.. ..+.+.+|||||++.+...+..+++.
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEK--GRVAFTVFDMGGAKKFRGLWETYYDN 86 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEE--TTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEe--CCEEEEEEECCCCHhHHHHHHHHHhc
Confidence 3456789999999999999999999999988876 6667766433 33333 44789999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCC----CCCCCCCEEEEEecCCCCCCCCcccchHHH-HHHH-HHcCCCcE
Q 028305 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADP----GEHEACPFVLLGNKIDTDGGSSRVVPQKKA-LEWC-AYRGNIPY 158 (210)
Q Consensus 85 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~----~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~-~~~~-~~~~~~~~ 158 (210)
+|++|+|||++++.++..+..|+..+...... ....++|+++|+||+|+.+........+.. .... +.. ...+
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~ 165 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDH-PFVI 165 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTS-CEEE
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCC-eeEE
Confidence 99999999999999999999888887654110 001267999999999997652211111111 1111 223 4789
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 159 FETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 159 ~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
+++||++|.|++++|++|.+.+.+...
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred EEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999987755
No 82
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=2.6e-31 Score=188.03 Aligned_cols=164 Identities=25% Similarity=0.404 Sum_probs=127.7
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
....++|+|+|++|+|||||+++|.++.+...+.++.+.++.. +... .+.+.+|||||++++...+..+++.+|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 3568999999999999999999999988876777777666543 3333 47899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH----cCCCcEEEecCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY----RGNIPYFETSAK 164 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~ 164 (210)
++|||++++.++..+..|+..+..... ..++|+++|+||+|+.+.. ..++....... .....++++||+
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~SA~ 167 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQ---LQGIPVLVLGNKRDLPGAL----DEKELIEKMNLSAIQDREICCYSISCK 167 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcc---cCCCCEEEEEECCCCccCC----CHHHHHHHhChhhhccCCeeEEEEECC
Confidence 999999999999999888887765321 1278999999999997542 11222111111 123579999999
Q ss_pred CCCChHHHHHHHHHHHHhc
Q 028305 165 EDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 165 ~~~~v~~~~~~l~~~~~~~ 183 (210)
+|.|++++|++|.+.+.+.
T Consensus 168 ~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 168 EKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp TCTTHHHHHHHHHHTCC--
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999876543
No 83
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1.3e-30 Score=181.50 Aligned_cols=165 Identities=19% Similarity=0.323 Sum_probs=125.9
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...++|+|+|++|+|||||+++|.++.+. .+.++.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN--VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE--EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc--eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 45799999999999999999999988875 344555433 34455553 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcc-cchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRV-VPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
+|+|++++.++.....|+..+..... ..++|+++|+||+|+.+..... .........+...+ .+++++||++|.|
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 155 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEE---LRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRK-WQIFKTSATKGTG 155 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSC-EEEEECCTTTCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchh---hCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCc-eEEEECcCCCCcC
Confidence 99999999999998888877765321 1278999999999997642111 11111111112223 5799999999999
Q ss_pred hHHHHHHHHHHHHhc
Q 028305 169 IDEAFLCVAEIALKN 183 (210)
Q Consensus 169 v~~~~~~l~~~~~~~ 183 (210)
++++|++|.+.+.+.
T Consensus 156 i~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 156 LDEAMEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988654
No 84
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=1e-29 Score=181.46 Aligned_cols=169 Identities=38% Similarity=0.677 Sum_probs=144.5
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+......++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45799999999999999999999999888777788878888888889999899999999999998888888889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCCh
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNI 169 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (210)
+|+|+.+..++..+..|+..+...... +.|+++|+||+|+.+. +....++++.++...+ +.++++||+++.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~i~~v~nK~Dl~~~--~~~~~~~a~~l~~~~~-~~~~d~Sal~~~~i 155 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNN-LSFIETSALDSTNV 155 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCC----CCeEEEEEECcccccc--cCcCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 999999999999888888877654322 6799999999999654 4455677888888777 88999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 028305 170 DEAFLCVAEIALKNEH 185 (210)
Q Consensus 170 ~~~~~~l~~~~~~~~~ 185 (210)
+++|++|.+.+.+...
T Consensus 156 ~~l~~~l~~~~~~~~~ 171 (199)
T 2f9l_A 156 EEAFKNILTEIYRIVS 171 (199)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987654
No 85
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=2.2e-30 Score=182.85 Aligned_cols=162 Identities=18% Similarity=0.264 Sum_probs=127.5
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...++|+++|++|+|||||+++|.++. ...+.++.+.. ...+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 578999999999999999999999877 55566666533 34444554 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH----cCCCcEEEecCCC
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY----RGNIPYFETSAKE 165 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~ 165 (210)
+|+|++++.+++.+..|+..+..... ..++|+++|+||+|+.+.. ..++....... ....+++++||++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEER---LAGATLLIFANKQDLPGAL----SCNAIQEALELDSIRSHHWRIQGCSAVT 163 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChh---cCCCcEEEEEeCccCCCCC----CHHHHHHHhChhhccCCceEEEEeeCCC
Confidence 99999999999999888887765421 1268999999999997542 12233222211 1236799999999
Q ss_pred CCChHHHHHHHHHHHHhc
Q 028305 166 DCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~ 183 (210)
|.|++++|++|.+.+.+.
T Consensus 164 ~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CTTHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999988654
No 86
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7.4e-31 Score=185.53 Aligned_cols=165 Identities=17% Similarity=0.277 Sum_probs=124.4
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
+...++|+|+|++|+|||||+++|.++.+. .+.++.+.. ...+.+++ +.+.+|||||++++...+..+++.+|++
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 87 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFV 87 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 356899999999999999999999988776 455555433 33444554 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH----cCCCcEEEecCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY----RGNIPYFETSAK 164 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~ 164 (210)
++|+|++++.+++.+..|+..+..... ..++|+++|+||+|+.+. ...+++...... .....++++||+
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 160 (187)
T 1zj6_A 88 IVVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKEC----MTVAEISQFLKLTSIKDHQWHIQACCAL 160 (187)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTSGG---GTTCEEEEEEECTTSTTC----CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhchh---hCCCeEEEEEECCCCcCC----CCHHHHHHHhChhhhcCCCcEEEEccCC
Confidence 999999999999999999888875421 127899999999999753 223333333321 123589999999
Q ss_pred CCCChHHHHHHHHHHHHhccc
Q 028305 165 EDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 165 ~~~~v~~~~~~l~~~~~~~~~ 185 (210)
+|.|++++|++|++.+.....
T Consensus 161 ~g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 161 TGEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp TTBTHHHHHHHHHHHHCC---
T ss_pred CCcCHHHHHHHHHHHHHHHhh
Confidence 999999999999998866544
No 87
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=3.9e-30 Score=182.29 Aligned_cols=158 Identities=20% Similarity=0.321 Sum_probs=125.0
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
.+.++|+++|++|+|||||+++|.++.+. .+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 45679999999999999999999988775 344555443 45566666 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc-----------CCCcE
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR-----------GNIPY 158 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 158 (210)
+|||++++.+++.+..|+..+..... ..++|+++|+||+|+.+ ....+++.+.+... ...++
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAE---LKDVPFVILGNKIDAPN----AVSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTT----CCCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHcchh---hcCCCEEEEEECCCCcC----CCCHHHHHHHhCCccccccccccccceEEE
Confidence 99999999999999999888865321 12789999999999975 23445555544321 23679
Q ss_pred EEecCCCCCChHHHHHHHHHH
Q 028305 159 FETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 159 ~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
+++||++|.|++++|++|.+.
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEeECCcCCCHHHHHHHHHhh
Confidence 999999999999999999753
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1.1e-30 Score=185.48 Aligned_cols=163 Identities=15% Similarity=0.306 Sum_probs=120.2
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
.....++|+|+|++|+|||||+++|.++.+. .+.++.+ +....+...+ +.+.+|||||++.+...+..+++.+|+
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQG 99 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 3567899999999999999999999987775 3344444 3334444444 789999999999999998899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH----cCCCcEEEecC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY----RGNIPYFETSA 163 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa 163 (210)
+++|||++++.++..+..|+..+..... ..++|+++|+||+|+.+.. ..+++...... ....+++++||
T Consensus 100 iilv~D~~~~~s~~~~~~~l~~~~~~~~---~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~SA 172 (192)
T 2b6h_A 100 LIFVVDSNDRERVQESADELQKMLQEDE---LRDAVLLVFANKQDMPNAM----PVSELTDKLGLQHLRSRTWYVQATCA 172 (192)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCSSCCEEEEECBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhcccc---cCCCeEEEEEECCCCCCCC----CHHHHHHHhCcccccCCceEEEECcC
Confidence 9999999999999999888887765321 1268999999999997542 11222211110 11256999999
Q ss_pred CCCCChHHHHHHHHHHHHh
Q 028305 164 KEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~~~~~ 182 (210)
++|.|++++|++|.+.+.+
T Consensus 173 ~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 173 TQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp TTTBTHHHHHHHHHHHTTT
T ss_pred CCcCCHHHHHHHHHHHHhc
Confidence 9999999999999987743
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=1.8e-30 Score=185.18 Aligned_cols=158 Identities=18% Similarity=0.299 Sum_probs=120.1
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
.+.++|+++|++|+|||||+++|.++.+. .+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 45689999999999999999999987764 344454433 34555666 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc----------------
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR---------------- 153 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~---------------- 153 (210)
+|+|++++.++..+..|+..+..... ..++|+++|+||+|+.+ ....+++..++...
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDET---IANVPILILGNKIDRPE----AISEERLREMFGLYGQTTGKGSVSLKELNA 170 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTSCEEEEEECTTSTT----CCCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEEECCCccc----cCCHHHHHHHhCcccccccccccccccccC
Confidence 99999999999999999888865421 12789999999999974 34456666655421
Q ss_pred CCCcEEEecCCCCCChHHHHHHHHHH
Q 028305 154 GNIPYFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 154 ~~~~~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
....++++||++|.|++++|++|.+.
T Consensus 171 ~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 171 RPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 23679999999999999999999764
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=6.2e-30 Score=181.21 Aligned_cols=165 Identities=19% Similarity=0.318 Sum_probs=127.7
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCc-CCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNK-FSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
....++|+|+|++|+|||||+++|.+.. +...+.++.+ .....+.+++ +.+.+|||||++.+...+..+++.+|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3568999999999999999999999877 4555555555 3445555554 689999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHH--Hc--CCCcEEEecC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCA--YR--GNIPYFETSA 163 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~Sa 163 (210)
+++|+|++++.++..+..|+..+...... ...++|+++|+||+|+.+. ...+++...+. .. ....++++||
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDI-KHRRIPILFFANKMDLRDA----VTSVKVSQLLCLENIKDKPWHICASDA 168 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTT-TTSCCCEEEEEECTTSTTC----CCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhh-ccCCCeEEEEEeCcCcccC----CCHHHHHHHhChhhccCCceEEEEccC
Confidence 99999999999999998888888765321 0127899999999999753 23344544442 11 1368999999
Q ss_pred CCCCChHHHHHHHHHHHHh
Q 028305 164 KEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~~~~~ 182 (210)
++|.|++++|++|.+.+.+
T Consensus 169 ~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 169 IKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTTBTHHHHHHHHHHHC--
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999987643
No 91
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=7.3e-31 Score=181.58 Aligned_cols=158 Identities=15% Similarity=0.265 Sum_probs=120.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
+||+++|++|+|||||+++|.++.+.. +.++.+. ....+... .+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877763 4455542 23333443 478999999999999988888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH----cCCCcEEEecCCCCCC
Q 028305 93 DVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY----RGNIPYFETSAKEDCN 168 (210)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~ 168 (210)
|++++.++..+..|+..+..... ..++|+++|+||+|+.+.. ..++....... ....+++++||++|.|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred ECCCHHHHHHHHHHHHHHHhchh---hcCCeEEEEEECcCCcCCC----CHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence 99999999999888887765321 1267999999999997542 11222111110 0125699999999999
Q ss_pred hHHHHHHHHHHHHh
Q 028305 169 IDEAFLCVAEIALK 182 (210)
Q Consensus 169 v~~~~~~l~~~~~~ 182 (210)
++++|++|.+.+.+
T Consensus 149 i~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 149 LYEGLDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 92
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=9.7e-31 Score=184.06 Aligned_cols=162 Identities=21% Similarity=0.317 Sum_probs=122.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...++|+++|++|+|||||+++|.+..+. .+.++.+. ....+..++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 56899999999999999999999987553 34444443 334445554 78999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH----cCCCcEEEecCCC
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY----RGNIPYFETSAKE 165 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~ 165 (210)
+|||++++.+++.+..|+..+.... ...++|+++|+||+|+.+.. ..+++...... ....+++++||++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEE---KLSCVPVLIFANKQDLLTAA----PASEIAEGLNLHTIRDRVWQIQSCSALT 161 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCG---GGTTCCEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECcCcccCC----CHHHHHHHhCchhccCCceEEEEccCCC
Confidence 9999999999999888887765421 11278999999999997542 12222222111 1135799999999
Q ss_pred CCChHHHHHHHHHHHHhc
Q 028305 166 DCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~ 183 (210)
|.|++++|++|.+.+.+.
T Consensus 162 g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 162 GEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp CTTHHHHHHHHHHTC---
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999877543
No 93
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=3.6e-31 Score=186.73 Aligned_cols=167 Identities=24% Similarity=0.422 Sum_probs=121.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC--cCCCcccceeeeEEEEEEEEe---CCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYN--KFSQQYKATIGADFVTKELQM---DDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
.+||+|+|++|||||||+++|.+. .+...+.++.+.++....+.. ++..+.+.+|||+|++++......+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999974 455556677777766555443 335678999999999999888888899999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccc---hHHHHHHHHHcCCCc----E
Q 028305 87 CCVLVYDVNVQ-KTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVP---QKKALEWCAYRGNIP----Y 158 (210)
Q Consensus 87 ~vi~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~---~~~~~~~~~~~~~~~----~ 158 (210)
++++|||++++ .+++.+..|+..+..... ++|+++|+||+|+.+. +... .+....+++..+ .+ +
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~ 153 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-----SSPVILVGTHLDVSDE--KQRKACMSKITKELLNKRG-FPAIRDY 153 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-----TCEEEEEEECGGGCCH--HHHHHHHHHHHHHTTTCTT-SCEEEEE
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-----CCcEEEEEECCCcccc--hhhHHHHHHHHHHHHHhcC-Ccchhhe
Confidence 99999999997 578999999988876542 6799999999998653 2221 233445554455 44 9
Q ss_pred EEecCCCCC-ChHHHHHHHHHHHHhcccc
Q 028305 159 FETSAKEDC-NIDEAFLCVAEIALKNEHK 186 (210)
Q Consensus 159 ~~~Sa~~~~-~v~~~~~~l~~~~~~~~~~ 186 (210)
+++||++|. +++++++.+.+.+.+...+
T Consensus 154 ~~~Sa~~~~~~~~~l~~~i~~~~~~~~~~ 182 (184)
T 2zej_A 154 HFVNATEESDALAKLRKTIINESLNFKIR 182 (184)
T ss_dssp EECCTTSCCHHHHHHHHHHHHHHHCC---
T ss_pred EEEecccCchhHHHHHHHHHHHHhccccC
Confidence 999999997 9999999999988776554
No 94
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=4.9e-29 Score=176.77 Aligned_cols=165 Identities=39% Similarity=0.697 Sum_probs=144.0
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
.+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+++...+..+++.++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 35679999999999999999999999988878888888888888899999889999999999998888888888999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCC
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCN 168 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (210)
++|+|+.+..+++.+..|+..+...... +.|+++++||+|+.+. +....++++.++...+ +.++++|++++.|
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~i~~v~nK~Dl~~~--~~~~~~~a~~l~~~~~-~~~ld~Sald~~~ 178 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNG-LSFIETSALDSTN 178 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 9999999999999888888777654322 6799999999999653 4455677888888777 8999999999999
Q ss_pred hHHHHHHHHHHH
Q 028305 169 IDEAFLCVAEIA 180 (210)
Q Consensus 169 v~~~~~~l~~~~ 180 (210)
++++|+.|.+.+
T Consensus 179 v~~l~~~l~~~i 190 (191)
T 1oix_A 179 VEAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 95
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=1.4e-30 Score=183.24 Aligned_cols=160 Identities=18% Similarity=0.302 Sum_probs=122.1
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADC 87 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (210)
.....++|+|+|++|+|||||+++|.++.+ ..+.++.+... ..+.+++ +.+.+|||||++++...+..+++.+|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 345789999999999999999999998877 34445554333 3344554 789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH----cCCCcEEEecC
Q 028305 88 CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY----RGNIPYFETSA 163 (210)
Q Consensus 88 vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa 163 (210)
+++|+|++++.+++.+..|+..+..... ..++|+++|+||+|+.+. ...+++...... .....++++||
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~Sa 164 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKEC----MTVAEISQFLKLTSIKDHQWHIQACCA 164 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC----CCHHHHHHHTTGGGCCSSCEEEEECBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChh---hCCCeEEEEEECCCcccC----CCHHHHHHHhCcccccCCceEEEEccC
Confidence 9999999999999999888888765321 127899999999999753 222333332211 11257999999
Q ss_pred CCCCChHHHHHHHHHH
Q 028305 164 KEDCNIDEAFLCVAEI 179 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~~ 179 (210)
++|.|++++|++|.+.
T Consensus 165 ~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 165 LTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTTBTHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHhh
Confidence 9999999999999764
No 96
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=2.5e-29 Score=192.60 Aligned_cols=167 Identities=26% Similarity=0.490 Sum_probs=143.0
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...++|+++|++|+|||||+++|.++.+...+.++++..+ ...+..++..+.+.+|||||++.+......+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 4579999999999999999999999888777777665444 556678888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC----------CcccchHHHHHHHHHcCCCcE
Q 028305 90 LVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGS----------SRVVPQKKALEWCAYRGNIPY 158 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 158 (210)
+|||++++.++..+. .|+..+..... ++|+++|+||+|+.+.. .+.+..+++..+++..+..++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 306 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 306 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC-----CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEE
Confidence 999999999999987 67777776543 78999999999986531 145667888889988885599
Q ss_pred EEecCCCCCChHHHHHHHHHHHHh
Q 028305 159 FETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 159 ~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
+++||++|.|++++|+.|.+.++.
T Consensus 307 ~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 307 LECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEecCCCCcCHHHHHHHHHHHHhc
Confidence 999999999999999999998864
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=4.2e-30 Score=181.91 Aligned_cols=162 Identities=18% Similarity=0.301 Sum_probs=125.6
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
+..++|+|+|++|+|||||+++|..+.+.. +.++.+.. ...+..++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 578999999999999999999998777653 44444432 33444443 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHH-----HHcCCCcEEEecCC
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWC-----AYRGNIPYFETSAK 164 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~ 164 (210)
+|+|++++.++.....|+..+..... ..++|+++|+||+|+.+... .+++.... ... ..+++++||+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 166 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDE---LRKSLLLIFANKQDLPDAAS----EAEIAEQLGVSSIMNR-TWTIVKSSSK 166 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCST---TTTCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSS-CEEEEECCTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhh---cCCCeEEEEEECCCCcCCCC----HHHHHHHhChhhccCC-ceEEEEccCC
Confidence 99999999999998888877765321 23789999999999975421 12222111 112 2579999999
Q ss_pred CCCChHHHHHHHHHHHHhcc
Q 028305 165 EDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 165 ~~~~v~~~~~~l~~~~~~~~ 184 (210)
+|.|++++|++|.+.+.+..
T Consensus 167 ~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 167 TGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp TCTTHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHHHHHHHhcc
Confidence 99999999999999987653
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.2e-32 Score=197.39 Aligned_cols=169 Identities=27% Similarity=0.490 Sum_probs=137.6
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGAD 86 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (210)
......++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++++...+..+++.+|
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD 103 (204)
Confidence 3446789999999999999999999998888766666664433 445566777788999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC----------cccchHHHHHHHHHcCC
Q 028305 87 CCVLVYDVNVQKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS----------RVVPQKKALEWCAYRGN 155 (210)
Q Consensus 87 ~vi~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~----------~~~~~~~~~~~~~~~~~ 155 (210)
++++|||++++.+++.+. .|+..+..... ++|+++|+||+|+.+... +....+++..+++..+.
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~~l~~~~~-----~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 178 (204)
T 3th5_A 104 VFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 178 (204)
Confidence 999999999999999886 67777665432 679999999999965321 14555677777777774
Q ss_pred CcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 156 IPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 156 ~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
.+++++||++|.|++++|++|.+.++
T Consensus 179 ~~~~~vSA~~g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 179 VKYLECSALTQRGLKTVFDEAIRAVL 204 (204)
Confidence 48999999999999999999988653
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2.1e-30 Score=182.39 Aligned_cols=162 Identities=18% Similarity=0.338 Sum_probs=122.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...++|+++|++|+|||||+++|.++.+ ..+.++.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 6789999999999999999999997776 3444555433 33444554 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc----CCCcEEEecCCC
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR----GNIPYFETSAKE 165 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~ 165 (210)
+|+|++++.+++.+..|+..+..... ..++|+++|+||+|+.+. ...+++....... ...+++++||++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 163 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEE---LQDAALLVFANKQDQPGA----LSASEVSKELNLVELKDRSWSIVASSAIK 163 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSST---TSSCEEEEEEECTTSTTC----CCHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChh---hCCCeEEEEEECCCCCCC----CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 99999999999998888877765321 237899999999999753 2223333322211 124799999999
Q ss_pred CCChHHHHHHHHHHHHhc
Q 028305 166 DCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~ 183 (210)
|.|++++|++|.+.+.+.
T Consensus 164 ~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 164 GEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhc
Confidence 999999999999988764
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=5.4e-30 Score=182.43 Aligned_cols=166 Identities=19% Similarity=0.240 Sum_probs=120.3
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEe-CCeEEEEEEEeCCCcccccccc---cccc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQM-DDKLVTLQIWDTAGQERFQSLG---SAFY 82 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~~~ 82 (210)
......+||+|+|++|||||||++++.+. +......+...........+ ++..+.+.+|||+|++.+.... ..++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 44567899999999999999999987764 33222222222111222223 2556889999999999987777 7899
Q ss_pred cCCcEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC-----CcccchHHHHHHHH----
Q 028305 83 RGADCCVLVYDVNVQ--KTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGS-----SRVVPQKKALEWCA---- 151 (210)
Q Consensus 83 ~~~d~vi~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~-----~~~~~~~~~~~~~~---- 151 (210)
+.+|++|+|||++++ +++..+..|+..+..... ++|+++|+||+|+.+.. .+.+..++...+++
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP-----DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT-----TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC-----CCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 999999999999997 666777777776644333 78999999999986531 13455556677777
Q ss_pred HcCCCcEEEecCCCCCChHHHHHHHHHHH
Q 028305 152 YRGNIPYFETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
..+ +.++++||++ .|++++|+.+++.+
T Consensus 169 ~~~-~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLH-LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSC-EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCC-cceEEEEech-hhHHHHHHHHHHHh
Confidence 445 7899999999 99999999999865
No 101
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=7.6e-29 Score=173.62 Aligned_cols=163 Identities=17% Similarity=0.211 Sum_probs=121.5
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCC 88 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~v 88 (210)
....++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+..++ ..+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 45688999999999999999999999888766666665555555566666 4578999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcC--------CCcEEE
Q 028305 89 VLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRG--------NIPYFE 160 (210)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 160 (210)
++|+|++++....... ++..+.. .++|+++|+||+|+.+.. .++......... ..++++
T Consensus 83 i~v~d~~~~~~~~~~~-~l~~~~~-------~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVE-AINHAKA-------ANVPIIVAINKMDKPEAN-----PDRVMQELMEYNLVPEEWGGDTIFCK 149 (178)
T ss_dssp EEEEETTCCCCHHHHH-HHHHHGG-------GSCCEEEEEETTTSSCSC-----HHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred EEEEECCCCCcHHHHH-HHHHHHh-------CCCCEEEEEECccCCcCC-----HHHHHHHHHhcCcChhHcCCcccEEE
Confidence 9999998843222221 1122211 167999999999997531 122222222222 147999
Q ss_pred ecCCCCCChHHHHHHHHHHHHhcccc
Q 028305 161 TSAKEDCNIDEAFLCVAEIALKNEHK 186 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~~~~~~~~ 186 (210)
+||++|.|++++|++|.+.+...+.+
T Consensus 150 ~Sa~~~~gv~~l~~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 150 LSAKTKEGLDHLLEMILLVSEMEELK 175 (178)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred EecCCCCCHHHHHHHHHHhhhhhccc
Confidence 99999999999999999998877653
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=1.2e-28 Score=177.73 Aligned_cols=167 Identities=19% Similarity=0.232 Sum_probs=115.4
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCe-EEEEEEEeCCCcccccc-cccccccCCc
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDK-LVTLQIWDTAGQERFQS-LGSAFYRGAD 86 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~d 86 (210)
+...++|+|+|++|+|||||+++|+++.+...+.+ ++.+... +.+++. .+.+.+|||||++.+.. .+..+++.+|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 45689999999999999999999999888766543 3334433 555543 57899999999999887 7788899999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHH--------------
Q 028305 87 CCVLVYDVNVQK-TFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCA-------------- 151 (210)
Q Consensus 87 ~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~-------------- 151 (210)
++++|||+++.. ++.....++..+..... ....++|+++|+||+|+.+........+.+.....
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~ 159 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSM-ALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLD 159 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHH-TSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhh-hcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccccc
Confidence 999999999854 45555554444433210 01126799999999999765333222222222222
Q ss_pred -------HcC-------------CCcEEEecCCCC------CChHHHHHHHHHH
Q 028305 152 -------YRG-------------NIPYFETSAKED------CNIDEAFLCVAEI 179 (210)
Q Consensus 152 -------~~~-------------~~~~~~~Sa~~~------~~v~~~~~~l~~~ 179 (210)
..+ .+.|+++||++| .|++++|++|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 011 467999999999 9999999999875
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=187.70 Aligned_cols=167 Identities=23% Similarity=0.336 Sum_probs=122.8
Q ss_pred ccccceEEEEEEcCC---------CCcHHHHHHHHhh---CcCCCccccee-eeEEEEEE--------------EEeCCe
Q 028305 7 MKRRNLLKVIVLGDS---------GVGKTSLMNQYVY---NKFSQQYKATI-GADFVTKE--------------LQMDDK 59 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~ 59 (210)
+.....+||+|+|.+ |||||||+++|++ ..+...+.+++ +.++.... ..+++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 445678999999999 9999999999998 55555555554 33222111 124567
Q ss_pred EEEEEEEe-----------------------CCCccccccccccccc---------------------CCcEEEEEEECC
Q 028305 60 LVTLQIWD-----------------------TAGQERFQSLGSAFYR---------------------GADCCVLVYDVN 95 (210)
Q Consensus 60 ~~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~vi~v~d~~ 95 (210)
.+.+.+|| ++|++.+..++..+++ ++|++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78899999 6677777777777776 799999999999
Q ss_pred Ch--hhHHHHHHHHHHHHHh-cCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 96 VQ--KTFESLQNWREEFLKQ-ADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 96 ~~--~s~~~~~~~~~~l~~~-~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
++ .+++.+..|+..+... ... ++|+++|+||+|+.+. +.+ ++...++......+++++||++|.|++++
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~----~~piilV~NK~Dl~~~--~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~el 245 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKT----KKPIVVVLTKCDEGVE--RYI--RDAHTFALSKKNLQVVETSARSNVNVDLA 245 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHT----TCCEEEEEECGGGBCH--HHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccC----CCCEEEEEEccccccc--HHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHH
Confidence 98 9999999999888765 222 6899999999998643 222 56777777643489999999999999999
Q ss_pred HHHHHHHHH
Q 028305 173 FLCVAEIAL 181 (210)
Q Consensus 173 ~~~l~~~~~ 181 (210)
|++|.+.+.
T Consensus 246 f~~l~~~l~ 254 (255)
T 3c5h_A 246 FSTLVQLID 254 (255)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998764
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=1.1e-28 Score=186.94 Aligned_cols=166 Identities=20% Similarity=0.271 Sum_probs=128.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCC---CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccc-----cccccccc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFS---QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERF-----QSLGSAFY 82 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~ 82 (210)
..+||+++|++|+|||||+++|+++... ..+.++.+.. .....+++ .+.+.+|||||++.+ ......++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~--~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVE--HSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEE--EEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceE--EEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999977332 1233444433 34444544 588999999999988 67778888
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcc----cchHHHHHHHHHcC--CC
Q 028305 83 RGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRV----VPQKKALEWCAYRG--NI 156 (210)
Q Consensus 83 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~----~~~~~~~~~~~~~~--~~ 156 (210)
+.+|++|+|||++++.+++.+..|...+...... ..++|+++|+||+|+.+...+. ...+++..++...+ ..
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~ 156 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNL 156 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCe
Confidence 9999999999999999999987775544432211 1178999999999997632344 56678888998887 37
Q ss_pred cEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 157 PYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 157 ~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
+++++||++ .++.++|..+++.+..
T Consensus 157 ~~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 157 IGFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEEEeeecC-ChHHHHHHHHHHHHcC
Confidence 999999999 8999999998876543
No 105
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=2.2e-28 Score=169.46 Aligned_cols=153 Identities=13% Similarity=0.158 Sum_probs=112.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc------cccccccc--
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ------SLGSAFYR-- 83 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-- 83 (210)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||+..+. .....+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998776555555555555555566665 579999999988764 22344554
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecC
Q 028305 84 GADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSA 163 (210)
Q Consensus 84 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (210)
.+|++++|+|+++.+. ...|+..+... ++|+++|+||+|+... +... .+...+++..+ .+++++||
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~-------~~p~ilv~nK~Dl~~~--~~~~-~~~~~~~~~~~-~~~~~~SA 146 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLMEM-------GANLLLALNKMDLAKS--LGIE-IDVDKLEKILG-VKVVPLSA 146 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHHT-------TCCEEEEEECHHHHHH--TTCC-CCHHHHHHHHT-SCEEECBG
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHhc-------CCCEEEEEEchHhccc--cChh-hHHHHHHHHhC-CCEEEEEc
Confidence 7999999999988543 34566665442 6799999999998542 1122 23566777777 79999999
Q ss_pred CCCCChHHHHHHHHHHH
Q 028305 164 KEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~~~ 180 (210)
++|.|++++|+++.+.+
T Consensus 147 ~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 147 AKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGTBSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998764
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=8.8e-29 Score=188.94 Aligned_cols=162 Identities=14% Similarity=0.285 Sum_probs=119.1
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...++|+|+|++|+|||||+++|.+..+... .++.+... ..+...+ +.+.+|||||++.+......+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4568999999999999999999998876533 34444333 3344444 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc----CCCcEEEecCCC
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR----GNIPYFETSAKE 165 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~ 165 (210)
+|||++++.++..+..|+..+..... ..++|+++|+||+|+.+.. ..+++....... ...+++++||++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilV~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~vSAk~ 310 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRHRNWYIQATCATS 310 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHHTCTTCCSSCEEEEECBTTT
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhc---cCCCeEEEEEECccCCccc----CHHHHHHHhchhhhhcCCCEEEEEECCC
Confidence 99999999999998888777754321 2278999999999997642 122222221111 125699999999
Q ss_pred CCChHHHHHHHHHHHHhc
Q 028305 166 DCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~ 183 (210)
|.|++++|++|.+.+.+.
T Consensus 311 g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 311 GDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp TBTHHHHHHHHHHHHTC-
T ss_pred CcCHHHHHHHHHHHHHhc
Confidence 999999999999987643
No 107
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1.7e-27 Score=173.43 Aligned_cols=167 Identities=16% Similarity=0.083 Sum_probs=116.0
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccc---------cccccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERF---------QSLGSA 80 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~ 80 (210)
...++|+|+|++|+|||||+++|++..+.....+..+.+.........+ ..+.+|||||+.+. ......
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 5689999999999999999999998876533333434444444444444 67999999998321 111233
Q ss_pred cccCCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccch---HHHHHHHHHcC-
Q 028305 81 FYRGADCCVLVYDVNVQKTFES--LQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQ---KKALEWCAYRG- 154 (210)
Q Consensus 81 ~~~~~d~vi~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~---~~~~~~~~~~~- 154 (210)
++..+|++|+|||++++.++.. ...|+..+.... .++|+++|+||+|+.+. +.... +....++...+
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-----SNKSIVIGFNKIDKCNM--DSLSIDNKLLIKQILDNVKN 177 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC------CCCEEEEEECGGGCC----CCCHHHHHHHHHHHHHCCS
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-----cCCcEEEEEeCcccCCc--hhhHHHHHHHHHHHHHhcCC
Confidence 4677899999999999877642 234555554321 26799999999999764 22222 24555555443
Q ss_pred CCcEEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 155 NIPYFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
...++++||++|.|++++|++|.+.+.+.+.
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 178 PIKFSSFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence 2689999999999999999999999977654
No 108
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=3e-28 Score=173.13 Aligned_cols=164 Identities=16% Similarity=0.171 Sum_probs=109.1
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCC----------cccccc
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG----------QERFQS 76 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~ 76 (210)
++....++|+|+|++|+|||||+++|++..+.....++.+..........++ .+.+||||| ++.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR 94 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHH
Confidence 3455789999999999999999999998875544444443333333333333 489999999 666666
Q ss_pred cccccccCC---cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc
Q 028305 77 LGSAFYRGA---DCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR 153 (210)
Q Consensus 77 ~~~~~~~~~---d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~ 153 (210)
....+++.+ |++++|+|++++.++.... ++..+.. .++|+++|+||+|+.+........+++.......
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID 166 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChHHHHHHHHHHHHHHccc
Confidence 677777666 9999999999887766532 2222222 1679999999999976422222223343322223
Q ss_pred CCCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 154 GNIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 154 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
...+++++||++|.|++++|++|.+.+.
T Consensus 167 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 167 PEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 3478999999999999999999988764
No 109
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=1.7e-27 Score=169.06 Aligned_cols=161 Identities=18% Similarity=0.221 Sum_probs=116.4
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCC----------ccccccc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG----------QERFQSL 77 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 77 (210)
+....++|+|+|++|+|||||+++|++..+.. ..++.+..........+. .+.+||||| ++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 34567899999999999999999999877432 222222222222222222 478999999 5556666
Q ss_pred ccccccCC---cEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH
Q 028305 78 GSAFYRGA---DCCVLVYDVNVQKTFE--SLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY 152 (210)
Q Consensus 78 ~~~~~~~~---d~vi~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~ 152 (210)
...+++.+ |++++|+|.++..+.. .+..|.... ++|+++|+||+|+.+........+++..++..
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK 164 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhh
Confidence 66666555 9999999998764433 233343332 67999999999997654456666777788777
Q ss_pred cCCCcEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 153 RGNIPYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
.+..+++++||++|.|++++|++|.+.+.+
T Consensus 165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 165 YGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 666899999999999999999999988753
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=1.2e-27 Score=192.47 Aligned_cols=164 Identities=15% Similarity=0.249 Sum_probs=124.8
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
...++|+|+|.+|+|||||+++|.+..+. .+.++.+.... .+... .+.+.+|||+|++.+...+..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE--EEESS--SCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE--EEEeC--CEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999988865 34455554443 34443 378999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH----cCCCcEEEecCCC
Q 028305 90 LVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY----RGNIPYFETSAKE 165 (210)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~ 165 (210)
+|||++++.++..+..|+..+..... ..++|+++|+||+|+.+.. ..+++...... ....+++++||++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 467 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDRE---MRDAIILIFANKQDLPDAM----KPHEIQEKLGLTRIRDRNWYVQPSCATS 467 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGG---GTTCEEEEEEECCSSSSCC----CHHHHHHHTTCTTCCSSCEEEEECBTTT
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhh---cCCCcEEEEEECCCCCcCC----CHHHHHHHhchhhhhcCCeEEEEEECCC
Confidence 99999999999999988888765321 1278999999999997532 12222221111 1124599999999
Q ss_pred CCChHHHHHHHHHHHHhccc
Q 028305 166 DCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~~~ 185 (210)
|.|++++|++|.+.+.+..+
T Consensus 468 g~gi~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 468 GDGLYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp TBTHHHHHHHHHHHCC----
T ss_pred CCCHHHHHHHHHHHHHhcCC
Confidence 99999999999988765544
No 111
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=1.2e-26 Score=175.69 Aligned_cols=168 Identities=18% Similarity=0.123 Sum_probs=127.6
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCC-cccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc----------
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQ-QYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ---------- 75 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------- 75 (210)
+...+.-.|+++|.+|+|||||+|+|++..+.. ...+.++........... ....+.+|||||+.+..
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 456778999999999999999999999888752 333344444444444444 13679999999986544
Q ss_pred ccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc-C
Q 028305 76 SLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR-G 154 (210)
Q Consensus 76 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~-~ 154 (210)
.....+++.+|++++|+|++++.+......|+..+... ++|+++|+||+|+... .....+....+.+.. .
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-------~~pvilV~NK~Dl~~~--~~~~~~~~~~l~~~~~~ 154 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-------NKPVIVVINKIDKIGP--AKNVLPLIDEIHKKHPE 154 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-------CCCEEEEEECGGGSSS--GGGGHHHHHHHHHHCTT
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-------CCCEEEEEECccCCCC--HHHHHHHHHHHHHhccC
Confidence 44566788999999999999988888776666666542 6799999999999732 455566667777766 3
Q ss_pred CCcEEEecCCCCCChHHHHHHHHHHHHhcc
Q 028305 155 NIPYFETSAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
..+++++||++|.|++++|+.+.+.+....
T Consensus 155 ~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 155 LTEIVPISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp CCCEEECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHhCccCC
Confidence 578999999999999999999999886543
No 112
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.95 E-value=5.4e-27 Score=173.32 Aligned_cols=156 Identities=21% Similarity=0.155 Sum_probs=119.6
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc------cccc-
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG------SAFY- 82 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~- 82 (210)
...++|+++|++|+|||||+++|++..+.....++.+.+.....+...+ ..+.+|||||+..+.... ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4579999999999999999999998776655566666666666666555 679999999988765432 3444
Q ss_pred -cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEe
Q 028305 83 -RGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 83 -~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
..+|++++|+|.++.++.. .|...+... ++|+++|+||+|+.... ... .+...+++..+ ++++++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~-------~~pvilv~NK~Dl~~~~--~i~-~~~~~l~~~lg-~~vi~~ 146 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILEM-------EKKVILAMTAIDEAKKT--GMK-IDRYELQKHLG-IPVVFT 146 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHTT-------TCCEEEEEECHHHHHHT--TCC-BCHHHHHHHHC-SCEEEC
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHhc-------CCCEEEEEECcCCCCcc--chH-HHHHHHHHHcC-CCEEEE
Confidence 5899999999999865433 355555432 68999999999985431 111 23666777777 899999
Q ss_pred cCCCCCChHHHHHHHHHHHH
Q 028305 162 SAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~~~ 181 (210)
||++|.|++++|+++.+.+.
T Consensus 147 SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 147 SSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHhh
Confidence 99999999999999998765
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=1e-27 Score=169.51 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=116.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCC-----------ccccccccccc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAG-----------QERFQSLGSAF 81 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~ 81 (210)
++|+++|++|+|||||+++|.+..+...+.++.+..... .... .+.+||||| ++.+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999988876666665443332 2233 589999999 56666666667
Q ss_pred ccC-CcEEEEEEECCChhhHHHH-HHHHHH--------HHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHH
Q 028305 82 YRG-ADCCVLVYDVNVQKTFESL-QNWREE--------FLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCA 151 (210)
Q Consensus 82 ~~~-~d~vi~v~d~~~~~s~~~~-~~~~~~--------l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~ 151 (210)
++. ++++++++++.+..++..+ ..|... +...... .++|+++|+||+|+... . .++...+++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~---~~~~~~~~~ 147 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKN--V---QEVINFLAE 147 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSC--H---HHHHHHHHH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh---cCCceEEEeehHhccCc--H---HHHHHHHHH
Confidence 766 7777777777777777765 455432 2111110 16899999999999754 2 556777777
Q ss_pred HcCCC------cEEEecCCCCCChHHHHHHHHHHHHhcccc
Q 028305 152 YRGNI------PYFETSAKEDCNIDEAFLCVAEIALKNEHK 186 (210)
Q Consensus 152 ~~~~~------~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 186 (210)
..+.. .++++||++|.|++++|++|.+.+.+.+++
T Consensus 148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 77732 479999999999999999999999877654
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=7.2e-27 Score=160.90 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=105.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc-------ccccccccccC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER-------FQSLGSAFYRG 84 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 84 (210)
++|+++|++|+|||||+++|.+..+. ....++.+.+........++. .+.+|||||+.. +......+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988754 233344445555566666664 689999999876 33444567889
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCC
Q 028305 85 ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK 164 (210)
Q Consensus 85 ~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (210)
+|++++|+|++++.+... .++..+... .++|+++|+||+|+.+. .+++..++ ..+..+++++||+
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~------~~~p~ilv~nK~Dl~~~------~~~~~~~~-~~~~~~~~~~Sa~ 144 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR------KGKPVILVATKVDDPKH------ELYLGPLY-GLGFGDPIPTSSE 144 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH------HTCCEEEEEECCCSGGG------GGGCGGGG-GGSSCSCEECBTT
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh------cCCCEEEEEECcccccc------hHhHHHHH-hCCCCCeEEEecc
Confidence 999999999998644322 222222222 16799999999998653 23333444 4553489999999
Q ss_pred CCCChHHHHHHHHHHH
Q 028305 165 EDCNIDEAFLCVAEIA 180 (210)
Q Consensus 165 ~~~~v~~~~~~l~~~~ 180 (210)
+|.|++++|+++.+.+
T Consensus 145 ~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 145 HARGLEELLEAIWERL 160 (161)
T ss_dssp TTBSHHHHHHHHHHHC
T ss_pred cCCChHHHHHHHHHhC
Confidence 9999999999998764
No 115
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=3.7e-27 Score=166.52 Aligned_cols=159 Identities=13% Similarity=0.161 Sum_probs=121.3
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc------cccccccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ------SLGSAFYR 83 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~ 83 (210)
...++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||+..+. .....++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 3579999999999999999999998765545556666666666676665 679999999988764 23344443
Q ss_pred --CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEe
Q 028305 84 --GADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 84 --~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
.+|++++|+|.++ ++....|+..+.. .++|+++|+||+|+... +... ++...+++..+ .+++++
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~--~~~~-~~~~~~~~~~~-~~~~~~ 148 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME-------MGANLLLALNKMDLAKS--LGIE-IDVDKLEKILG-VKVVPL 148 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT-------TTCCEEEEEECHHHHHH--TTCC-CCHHHHHHHHT-SCEEEC
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh-------cCCCEEEEEEhhhcccc--ccch-HHHHHHHHHhC-CCeEEE
Confidence 5899999999875 4555666666654 16799999999998542 1111 35666777777 799999
Q ss_pred cCCCCCChHHHHHHHHHHHHhcc
Q 028305 162 SAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
||++|.|++++|+++.+.+....
T Consensus 149 Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 149 SAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp BGGGTBSHHHHHHHHHHHHTTC-
T ss_pred EecCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999987665
No 116
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=1.6e-28 Score=184.49 Aligned_cols=161 Identities=18% Similarity=0.205 Sum_probs=118.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCC---cccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc---cccccccCCcE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQ---QYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQS---LGSAFYRGADC 87 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~ 87 (210)
||+++|+.|+|||||++++.++.+.. ...++.+.++.. ++ ..+++++|||+|+++|.. ....+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654332 245666655542 22 347899999999999964 35788999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC-----cccchHHHHHHHHHc---CCCc
Q 028305 88 CVLVYDVNVQ--KTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS-----RVVPQKKALEWCAYR---GNIP 157 (210)
Q Consensus 88 vi~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~-----~~~~~~~~~~~~~~~---~~~~ 157 (210)
+|+|||++++ +....+..|+..+..... ++|+++|+||+|+.+... +++..++++++++.. ..+.
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~-----~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~ 150 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNP-----SINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVS 150 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCT-----TCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEE
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCC-----CCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCce
Confidence 9999999987 223333333444433322 789999999999976532 456666777777651 2378
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 158 YFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 158 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
+++|||++ .+|.++|..+++.+.+..+
T Consensus 151 f~eTSAkd-~nV~eAFs~iv~~li~~~~ 177 (331)
T 3r7w_B 151 FYLTSIFD-HSIYEAFSRIVQKLIPELS 177 (331)
T ss_dssp EECCCSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred EEEeccCC-CcHHHHHHHHHHHHHhhHH
Confidence 99999998 5999999999988765543
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=5.3e-27 Score=163.60 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=112.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc--------cccc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL--------GSAF 81 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 81 (210)
..++|+|+|++|+|||||+++|.+..+. ....++++.++....+.+++. .+.+|||||+.++... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4689999999999999999999987643 233345555666667777764 4889999997653211 1235
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEe
Q 028305 82 YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 82 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
++.+|++++|+|++++.+++. ..|+..+..... .++|+++|+||+|+.+... .. +.. ...+++++
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~~~-~~--------~~~-~~~~~~~~ 145 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLP----AKLPITVVRNKADITGETL-GM--------SEV-NGHALIRL 145 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSC----TTCCEEEEEECHHHHCCCC-EE--------EEE-TTEEEEEC
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcc----cCCCEEEEEECccCCcchh-hh--------hhc-cCCceEEE
Confidence 789999999999999887653 467776665543 2689999999999854311 11 011 23689999
Q ss_pred cCCCCCChHHHHHHHHHHHHh
Q 028305 162 SAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
||++|.|++++|++|.+.+..
T Consensus 146 SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 146 SARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp CTTTCTTHHHHHHHHHHHC--
T ss_pred eCCCCCCHHHHHHHHHHHhhh
Confidence 999999999999999887643
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=3.7e-27 Score=173.90 Aligned_cols=151 Identities=16% Similarity=0.168 Sum_probs=116.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc----------cccccc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQS----------LGSAFY 82 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 82 (210)
.+|+++|++|+|||||+|+|.+........++++.+.....+..++. .+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999988766666677777777777777774 799999999877653 334455
Q ss_pred --cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 83 --RGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 83 --~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
..+|++|+|+|+++.++...+..++..+ ++|+++|+||+|+........ ....+.+..+ +++++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~~----------~~pvilv~NK~Dl~~~~~~~~---~~~~l~~~lg-~~vi~ 145 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLFEL----------GKPVVVALNMMDIAEHRGISI---DTEKLESLLG-CSVIP 145 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHTTS----------CSCEEEEEECHHHHHHTTCEE---CHHHHHHHHC-SCEEE
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHHHc----------CCCEEEEEEChhcCCcCCcHH---HHHHHHHHcC-CCEEE
Confidence 7899999999999866554443332221 789999999999864321222 2444566667 89999
Q ss_pred ecCCCCCChHHHHHHHHHH
Q 028305 161 TSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~ 179 (210)
+||++|.|++++|+++.+.
T Consensus 146 ~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 146 IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CBGGGTBSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999887
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=2.9e-27 Score=191.58 Aligned_cols=167 Identities=24% Similarity=0.332 Sum_probs=123.4
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEE------E--EeCCeEEEEEEEeCCCccccccccc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKE------L--QMDDKLVTLQIWDTAGQERFQSLGS 79 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (210)
.....+||+++|.+|||||||+++|.+..+...+.++.+.++.... + ..++..+.+.+|||||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 4567899999999999999999999998887777777776665442 1 1223457899999999999999999
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEE
Q 028305 80 AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYF 159 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
.+++.+|++|+|+|+++. +....|+..+..... +.|+++|+||+|+.+. +....+++..++...+ .+++
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-----~~pvilV~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~ 185 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-----KSPVIVVMNKIDENPS--YNIEQKKINERFPAIE-NRFH 185 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-----SCCEEEEECCTTTCTT--CCCCHHHHHHHCGGGT-TCEE
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-----CCCEEEEEECCCcccc--cccCHHHHHHHHHhcC-CceE
Confidence 999999999999999865 455678888877643 6799999999999765 4556677777777777 7899
Q ss_pred EecCCCCCChHHHHHHHHHHHHhccc
Q 028305 160 ETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 160 ~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
++||++|.|++++++.+.+.+.+...
T Consensus 186 ~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 186 RISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp ECCC-----CTTHHHHHHHHHTCTTS
T ss_pred EEecCcccCHHHHHHHHHHHHhcccc
Confidence 99999999999999999998876543
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.94 E-value=4.1e-27 Score=175.53 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=117.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccc----------ccc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSL----------GSA 80 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~ 80 (210)
..++|+++|.+|+|||||+|+|++..+.....++++.+.....+...+ ..+.+|||||+..+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 468999999999999999999998876656667777777777777665 45888999998776521 112
Q ss_pred c--ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcE
Q 028305 81 F--YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPY 158 (210)
Q Consensus 81 ~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
+ .+.+|++++|+|.++.+....+..++..+ ++|+++|+||+|+.+.... ......+.+..+ +++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~----------~~p~ivv~NK~Dl~~~~~~---~~~~~~l~~~lg-~~~ 145 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQLLEL----------GIPCIVALNMLDIAEKQNI---RIEIDALSARLG-CPV 145 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH----------TCCEEEEEECHHHHHHTTE---EECHHHHHHHHT-SCE
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHHHHhc----------CCCEEEEEECccchhhhhH---HHHHHHHHHhcC-CCE
Confidence 2 26899999999999866554444443332 6799999999998643211 223455666677 899
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhc
Q 028305 159 FETSAKEDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 159 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 183 (210)
+++||++|.|++++|+++.+.+...
T Consensus 146 i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 146 IPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp EECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999998766543
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=1.2e-26 Score=172.48 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=112.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc------cccccccc-
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ------SLGSAFYR- 83 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 83 (210)
..++|+++|++|+|||||+++|++........++.+.+..... ++. ...+.+|||||+..+. .....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~--~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGL--VKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEE--CTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEE--Eec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 3689999999999999999999987654444555554443333 343 4679999999988765 23344554
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEec
Q 028305 84 -GADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETS 162 (210)
Q Consensus 84 -~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (210)
.+|++++|+|+++.++. ..|...+... ++|+++|+||+|+... +... .+...+++..+ ++++++|
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~~-------~~p~ilv~NK~Dl~~~--~~~~-~~~~~l~~~lg-~~vi~~S 144 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIET-------GIPVTIALNMIDVLDG--QGKK-INVDKLSYHLG-VPVVATS 144 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHHT-------CSCEEEEEECHHHHHH--TTCC-CCHHHHHHHHT-SCEEECB
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHhc-------CCCEEEEEEChhhCCc--CCcH-HHHHHHHHHcC-CCEEEEE
Confidence 69999999999886543 3455555431 7899999999998542 1111 34566677777 7999999
Q ss_pred CCCCCChHHHHHHHHHHHH
Q 028305 163 AKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 163 a~~~~~v~~~~~~l~~~~~ 181 (210)
|++|.|++++|+++.+.+.
T Consensus 145 A~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 145 ALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTTBSHHHHHHHHHHSCT
T ss_pred ccCCCCHHHHHHHHHHHHh
Confidence 9999999999999988653
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=1.6e-26 Score=167.61 Aligned_cols=168 Identities=14% Similarity=0.065 Sum_probs=109.7
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcC--CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCc----------cccc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKF--SQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQ----------ERFQ 75 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~ 75 (210)
.....++|+|+|.+|+|||||+++|++... .....++.+......... ......+.+|||||. +.+.
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVG-PAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEES-CTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEec-CCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 345678999999999999999999998863 222223333333222222 123356999999994 3334
Q ss_pred ccccccccC---CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH
Q 028305 76 SLGSAFYRG---ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY 152 (210)
Q Consensus 76 ~~~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~ 152 (210)
.....+++. +|++++|+|.+++.+... ..++..+.. .++|+++|+||+|+.+........++.......
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~ 175 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP-------TGKPIHSLLTKCDKLTRQESINALRATQKSLDA 175 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG-------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh-------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHh
Confidence 444455544 788999999987544222 334444433 167999999999997532222223333344433
Q ss_pred c------CCCcEEEecCCCCCChHHHHHHHHHHHHhcc
Q 028305 153 R------GNIPYFETSAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 153 ~------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
. ...+++++||++|.|++++|++|.+.+....
T Consensus 176 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 176 YRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred hhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 2 4578999999999999999999999886553
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=1.3e-25 Score=167.32 Aligned_cols=159 Identities=18% Similarity=0.152 Sum_probs=120.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc------cccccc--
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQS------LGSAFY-- 82 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-- 82 (210)
+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+...+ ..+.+|||||+..+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 468999999999999999999998877656677777777777777766 4599999999887665 334444
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEec
Q 028305 83 RGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETS 162 (210)
Q Consensus 83 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (210)
..+|++++|+|.++.+ ....|+..+.... .+|+++|+||+|+.+.. .. ......+.+..+ .+++++|
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~------~~p~ilv~NK~Dl~~~~--~~-~~~~~~l~~~lg-~~~~~~S 146 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEME------VKNIILVLNKFDLLKKK--GA-KIDIKKMRKELG-VPVIPTN 146 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHTT------CCSEEEEEECHHHHHHH--TC-CCCHHHHHHHHS-SCEEECB
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhcC------CCCEEEEEEChhcCccc--cc-HHHHHHHHHHcC-CcEEEEE
Confidence 6799999999998853 2334444444331 27999999999975421 11 112566667777 8999999
Q ss_pred CCCCCChHHHHHHHHHHHHhcc
Q 028305 163 AKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 163 a~~~~~v~~~~~~l~~~~~~~~ 184 (210)
|++|.|++++|+.+.+.+....
T Consensus 147 a~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 147 AKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp GGGTBTHHHHHHHHHHHHHTCC
T ss_pred eCCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999876543
No 124
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=1.8e-25 Score=176.88 Aligned_cols=164 Identities=16% Similarity=0.159 Sum_probs=114.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc----------ccccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER----------FQSLG 78 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~ 78 (210)
+..++|+++|.+|+|||||+|+|++.... ....++++.+.....+..++. .+.+|||||+.+ +....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 46799999999999999999999987754 344456666666666677764 589999999732 22222
Q ss_pred -cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHH----HHHHHHc
Q 028305 79 -SAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKA----LEWCAYR 153 (210)
Q Consensus 79 -~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~----~~~~~~~ 153 (210)
..+++.+|++++|+|++++.++... .|...+... ++|+++|+||+|+.+.. ....++. .......
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~-------~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~l~~~ 320 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA-------GKAVVIVVNKWDAVDKD--ESTMKEFEENIRDHFQFL 320 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT-------TCEEEEEEECGGGSCCC--TTHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc-------CCcEEEEEECccCCCcc--hHHHHHHHHHHHHhcccC
Confidence 2467889999999999998887765 455555432 67999999999997642 2222222 2222222
Q ss_pred CCCcEEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 154 GNIPYFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 154 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
...+++++||++|.|++++|+.+.+.+.+...
T Consensus 321 ~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 321 DYAPILFMSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp TTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred CCCCEEEEecccCCCHHHHHHHHHHHHHHhhc
Confidence 34789999999999999999999998876543
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.92 E-value=1.7e-24 Score=163.14 Aligned_cols=159 Identities=18% Similarity=0.128 Sum_probs=110.2
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCC-cccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc--------ccccccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQ-QYKATIGADFVTKELQMDDKLVTLQIWDTAGQER--------FQSLGSA 80 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~ 80 (210)
.+..+|+++|.+|+|||||+|+|++..+.. ...+.++..........+ ..++.+|||||..+ +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 456789999999999999999999887752 233333333333333333 36799999999765 3344566
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEE
Q 028305 81 FYRGADCCVLVYDVNVQKTFESLQNWR-EEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYF 159 (210)
Q Consensus 81 ~~~~~d~vi~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
+++.+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+.+. .....+.+..+ .+..+++
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-----~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~---~~~~~~~ 150 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-----GKVPILLVGNKLDAAKY--PEEAMKAYHEL---LPEAEPR 150 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-----TTSCEEEEEECGGGCSS--HHHHHHHHHHT---STTSEEE
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-----CCCCEEEEEECcccCCc--hHHHHHHHHHh---cCcCcEE
Confidence 788999999999998865433 3343 3443321 26799999999998753 11012222222 3445799
Q ss_pred EecCCCCCChHHHHHHHHHHHHh
Q 028305 160 ETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 160 ~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
++||++|.|++++++.+.+.+.+
T Consensus 151 ~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 151 MLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp ECCTTCHHHHHHHHHHHHTTCCB
T ss_pred EEeCCCCCCHHHHHHHHHHhccc
Confidence 99999999999999999887644
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=1.5e-24 Score=172.32 Aligned_cols=158 Identities=17% Similarity=0.184 Sum_probs=99.8
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc--------cc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG--------SA 80 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~ 80 (210)
...++|+|+|++|+|||||+|+|.+.... ....++++.+.....+..++ ..+.+|||||+.++.... ..
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------C
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 34689999999999999999999987532 34556666777777777776 579999999987655433 34
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 81 FYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 81 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
+++.+|++++|+|++++.++..+..+...+ .... ++|+++|+||+|+.+.. .. ....+..... .++++
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l-~~l~-----~~piIvV~NK~Dl~~~~--~~---~~~~l~~~~~-~~~i~ 376 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELK-AAHP-----AAKFLTVANKLDRAANA--DA---LIRAIADGTG-TEVIG 376 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHH-HHCT-----TSEEEEEEECTTSCTTT--HH---HHHHHHHHHT-SCEEE
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHH-HhcC-----CCCEEEEEECcCCCCcc--ch---hHHHHHhcCC-CceEE
Confidence 678999999999999988775433333222 2222 67999999999997642 22 1123333322 68999
Q ss_pred ecCCCCCChHHHHHHHHHHHH
Q 028305 161 TSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
+||++|.|+++++++|.+.+.
T Consensus 377 vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 377 ISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp CBTTTTBSHHHHHHHHTHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHh
Confidence 999999999999999999886
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.92 E-value=1.4e-23 Score=162.12 Aligned_cols=163 Identities=18% Similarity=0.151 Sum_probs=119.0
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc---------cccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQS---------LGSA 80 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~ 80 (210)
...++|+++|++|+|||||+++|.+........+..+...........+ ..+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4678999999999999999999998764322223333333334444443 6799999999754311 1123
Q ss_pred cccCCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcE
Q 028305 81 FYRGADCCVLVYDVNVQK--TFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPY 158 (210)
Q Consensus 81 ~~~~~d~vi~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (210)
....+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.+. . ..++...++...+ .++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-----~~piilV~NK~Dl~~~--~--~~~~~~~~~~~~~-~~~ 312 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-----DLPFLVVINKIDVADE--E--NIKRLEKFVKEKG-LNP 312 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-----TSCEEEEECCTTTCCH--H--HHHHHHHHHHHTT-CCC
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-----CCCEEEEEECcccCCh--H--HHHHHHHHHHhcC-CCe
Confidence 345689999999999877 67777788888776543 6799999999999753 1 1244555555555 789
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhcc
Q 028305 159 FETSAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 159 ~~~Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
+++||++|.|++++++++.+.+....
T Consensus 313 ~~iSA~~g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 313 IKISALKGTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986543
No 128
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=2.7e-25 Score=173.84 Aligned_cols=160 Identities=24% Similarity=0.254 Sum_probs=113.7
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc-------c
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG-------S 79 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~ 79 (210)
+....++|+|+|+.|+|||||+++|++..+. ....++++.+.....+...+. ..+.+|||||+.++.... .
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 3557899999999999999999999987763 334445555666666666554 379999999998776552 3
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEE
Q 028305 80 AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYF 159 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
.++..+|++++|+|+.... ....|+..+... ++|+++|+||+|+.+.... +....+.+..+ .+++
T Consensus 109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~-------~~piIvV~NK~Dl~~~~~~----~~~~~l~~~~g-~~v~ 173 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKEM-------EIPFVVVVNKIDVLGEKAE----ELKGLYESRYE-AKVL 173 (423)
T ss_dssp HHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT-------TCCEEEECCCCTTTTCCCT----HHHHHSSCCTT-CCCC
T ss_pred HHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc-------CCCEEEEEeCcCCCCccHH----HHHHHHHHHcC-CCEE
Confidence 4678899999999984332 234566666543 6799999999999765321 44555555555 7999
Q ss_pred EecCCCCCChHHHHHHHHHHHHhc
Q 028305 160 ETSAKEDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 160 ~~Sa~~~~~v~~~~~~l~~~~~~~ 183 (210)
++||++|.|++++|++|.+.+.+.
T Consensus 174 ~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 174 LVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EEECCCCCCHHHHHHHHHHhhhhh
Confidence 999999999999999999998655
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=2.2e-24 Score=171.52 Aligned_cols=165 Identities=18% Similarity=0.152 Sum_probs=116.8
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcC-CCcccceeeeEEEEEEEEeCCeEEEEEEEeCCC----------ccccccc
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKF-SQQYKATIGADFVTKELQMDDKLVTLQIWDTAG----------QERFQSL 77 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 77 (210)
....++|+++|.+|+|||||+++|.+... .....++++.+.....+..++. .+.+||||| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 35689999999999999999999997652 2334455555555555666664 699999999 4555544
Q ss_pred cc-ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc---
Q 028305 78 GS-AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR--- 153 (210)
Q Consensus 78 ~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~--- 153 (210)
.. .+++.+|++++|+|+++..... ...|...+... ++|+++|+||+|+.+. +....++....++..
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~~-------~~~~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~ 339 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHEA-------GKAVVIVVNKWDAVDK--DESTMKEFEENIRDHFQF 339 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHT-------TCEEEEEEECGGGSCC--CSSHHHHHHHHHHHHCGG
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHHc-------CCCEEEEEEChhcCCC--chHHHHHHHHHHHHhccc
Confidence 43 4678899999999998754422 23444444431 6799999999999764 334445554444443
Q ss_pred -CCCcEEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 154 -GNIPYFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 154 -~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
+..+++++||++|.|++++|+.+.+.+.+...
T Consensus 340 ~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 340 LDYAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp GTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 34789999999999999999999998876654
No 130
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.9e-25 Score=161.35 Aligned_cols=150 Identities=13% Similarity=0.153 Sum_probs=105.4
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCC---cccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccC-
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQ---QYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG- 84 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~- 84 (210)
....++|+|+|++|+|||||+++|.+..+.. .+.++.+.++ ....+.+|||||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 4578999999999999999999999887653 2333333222 34569999999999998888888876
Q ss_pred ---CcEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcc----cchHHHHHHHHHcCCC
Q 028305 85 ---ADCCVLVYDVN-VQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRV----VPQKKALEWCAYRGNI 156 (210)
Q Consensus 85 ---~d~vi~v~d~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~----~~~~~~~~~~~~~~~~ 156 (210)
+|++|+|+|++ ++.++.....|+..+..........++|+++|+||+|+.+..... ...+++..++...+ .
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-~ 158 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK-K 158 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh-c
Confidence 89999999999 888998888888877654211011278999999999997653211 12455666666655 6
Q ss_pred cEEEecCCCCCC
Q 028305 157 PYFETSAKEDCN 168 (210)
Q Consensus 157 ~~~~~Sa~~~~~ 168 (210)
.++++||++|.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 899999998875
No 131
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.91 E-value=5.6e-24 Score=169.75 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=114.3
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCc-------CCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccccccc
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNK-------FSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAF 81 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 81 (210)
....++|+++|++++|||||+++|.+.. ...+..++.+++.....+.+++ ..+.+|||||++++.......
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 3468999999999999999999999766 2233344444444444455555 679999999999998888889
Q ss_pred ccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc---CC
Q 028305 82 YRGADCCVLVYDVNV---QKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR---GN 155 (210)
Q Consensus 82 ~~~~d~vi~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~---~~ 155 (210)
+..+|++|+|+|+++ +.+.+.+. .+... ++|+++|+||+|+.+........+++..++... ..
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~-------~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 162 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHML----ILDHF-------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKN 162 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHHH----HHHHT-------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGG
T ss_pred HhhCCEEEEEEecCCCccHHHHHHHH----HHHHc-------CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccccc
Confidence 999999999999987 33433322 22211 678999999999975322333455566666554 14
Q ss_pred CcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 156 IPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 156 ~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
.+++++||++|.|+++++++|.+.+.
T Consensus 163 ~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 163 SSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 78999999999999999999999875
No 132
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=1.8e-23 Score=163.87 Aligned_cols=169 Identities=17% Similarity=0.098 Sum_probs=118.2
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEE-------E---------E---eCCeEEEEEEEe
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKE-------L---------Q---MDDKLVTLQIWD 67 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-------~---------~---~~~~~~~~~i~D 67 (210)
+..+..++|+++|++|+|||||+++|++......... ......... + . .......+.+||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGY-AETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEE-EEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCc-cccceeeccccccccceecccccccccccccccccceEEEEE
Confidence 4567789999999999999999999997543321100 000000000 0 0 011236799999
Q ss_pred CCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHH
Q 028305 68 TAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKAL 147 (210)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~ 147 (210)
|||++++......++..+|++++|+|++++.++.....++..+.... ..|+++|+||+|+.+........+++.
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~------~~~iivviNK~Dl~~~~~~~~~~~~i~ 155 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG------VKNLIIVQNKVDVVSKEEALSQYRQIK 155 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT------CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC------CCCEEEEEECccccchHHHHHHHHHHH
Confidence 99999999999999999999999999998766666666666554432 248999999999976422222333444
Q ss_pred HHHHHcC--CCcEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 148 EWCAYRG--NIPYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 148 ~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
.++...+ ..+++++||++|.|+++++++|.+.+..
T Consensus 156 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 156 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 4443322 4689999999999999999999987643
No 133
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=2.3e-24 Score=164.57 Aligned_cols=163 Identities=18% Similarity=0.146 Sum_probs=117.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc----ccccccccc---cCC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER----FQSLGSAFY---RGA 85 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~ 85 (210)
.+|+|+|.+|||||||+++|++..+.....+.++.......+.+++ ...+.+|||||..+ +..+...++ ..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 4689999999999999999997654322222233333334455543 24689999999543 233434444 459
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCC-CcEEEe
Q 028305 86 DCCVLVYDVNV---QKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGN-IPYFET 161 (210)
Q Consensus 86 d~vi~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 161 (210)
|++|+|+|+++ +.+++.+..|...+..+... ..++|+++|+||+|+... .+....+.+.... .+++++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~--l~~~p~ilV~NK~Dl~~~------~e~~~~l~~~l~~~~~v~~i 309 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLR--LTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPI 309 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSS--TTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhh--hcCCCEEEEEECccCCCC------HHHHHHHHHHhhcCCCEEEE
Confidence 99999999998 78888888888888775321 127899999999998642 1344555555542 579999
Q ss_pred cCCCCCChHHHHHHHHHHHHhcc
Q 028305 162 SAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
||+++.|+++++++|.+.+.+..
T Consensus 310 SA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHHTSCC
T ss_pred ECCCCcCHHHHHHHHHHHHhhCc
Confidence 99999999999999999887654
No 134
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.91 E-value=3.3e-23 Score=162.64 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=106.9
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCc---CCCcccceeee--EEEEEEEEe-------------C--C----eEEE
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNK---FSQQYKATIGA--DFVTKELQM-------------D--D----KLVT 62 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~ 62 (210)
+.++..++|+++|+.++|||||+++|.+.. +..+..++.++ .+....+.. + + ....
T Consensus 3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 82 (408)
T 1s0u_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR 82 (408)
T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence 345678999999999999999999998442 23333342222 332222211 1 1 1378
Q ss_pred EEEEeCCCcccccccccccccCCcEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC
Q 028305 63 LQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQ----KTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS 138 (210)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~ 138 (210)
+.+|||||+++|.......+..+|++|+|+|++++ ++.+.+. .+.. .. ..|+++|+||+|+.+...
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~-l~-----~~~iivv~NK~Dl~~~~~ 152 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEI-LG-----IDKIIIVQNKIDLVDEKQ 152 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHH-TT-----CCCEEEEEECTTSSCTTT
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHH-cC-----CCeEEEEEEccCCCCHHH
Confidence 99999999999988888888899999999999954 3333332 2221 11 348999999999976543
Q ss_pred cccchHHHHHHHHHc--CCCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 139 RVVPQKKALEWCAYR--GNIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 139 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
.....+++..++... ...+++++||++|.|+++++++|.+.+.
T Consensus 153 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 153 AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 334456666666543 2478999999999999999999988664
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=3.4e-23 Score=163.94 Aligned_cols=155 Identities=22% Similarity=0.272 Sum_probs=104.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc---------ccccccccc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER---------FQSLGSAFY 82 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~ 82 (210)
.+|+++|.||+|||||+|+|++.... ....++++.+.....+..++. .+.+|||||... +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987653 344566666666677777774 578999999653 233456678
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHH-HHHHHHcCCCcEEEe
Q 028305 83 RGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKA-LEWCAYRGNIPYFET 161 (210)
Q Consensus 83 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 161 (210)
+.+|++++|+|..++.+... .++..+.+.. ++|+++|+||+|+... . ..+. ..+. ..+...++++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~~------~~p~ilv~NK~D~~~~----~-~~~~~~~~~-~lg~~~~~~i 145 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRKS------TVDTILVANKAENLRE----F-EREVKPELY-SLGFGEPIPV 145 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHHH------TCCEEEEEESCCSHHH----H-HHHTHHHHG-GGSSCSCEEC
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHHc------CCCEEEEEeCCCCccc----c-HHHHHHHHH-hcCCCCEEEE
Confidence 99999999999987654432 1222222211 6799999999997421 1 1222 3343 3453478999
Q ss_pred cCCCCCChHHHHHHHHHHHHhc
Q 028305 162 SAKEDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~~~~~ 183 (210)
||++|.|+.++++++.+.+.+.
T Consensus 146 SA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 146 SAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHT
T ss_pred eccCCCCHHHHHHHHHHhcccc
Confidence 9999999999999999988754
No 136
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.90 E-value=1.1e-23 Score=167.31 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=115.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcc-cccc--------cccc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE-RFQS--------LGSA 80 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~ 80 (210)
..++|+++|.||+|||||+|+|.+.... ....++++.+.....+.+++ ..+.+|||||.. ++.. ....
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 3489999999999999999999987543 34456666677667777776 568999999987 5442 2245
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 81 FYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 81 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
+++.+|++++|+|++++.+++... ++..+ . +.|+++|+||+|+.+. ...+++..++. . ..++++
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~-----~~piivV~NK~DL~~~----~~~~~~~~~~~-~-~~~~i~ 383 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRK-ILERI----K-----NKRYLVVINKVDVVEK----INEEEIKNKLG-T-DRHMVK 383 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHH-HHHHH----T-----TSSEEEEEEECSSCCC----CCHHHHHHHHT-C-STTEEE
T ss_pred HhhcccEEEEEecCCCCCCHHHHH-HHHHh----c-----CCCEEEEEECcccccc----cCHHHHHHHhc-C-CCcEEE
Confidence 678899999999999987776532 22222 1 6799999999999653 22344444332 2 268999
Q ss_pred ecCCCCCChHHHHHHHHHHHHh
Q 028305 161 TSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
+||++|.|+++++++|.+.+..
T Consensus 384 iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 384 ISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp EEGGGTCCHHHHHHHHHHHTHH
T ss_pred EECCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999998663
No 137
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.90 E-value=8.5e-23 Score=154.06 Aligned_cols=161 Identities=16% Similarity=0.117 Sum_probs=110.8
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCC-cccceeeeEEEEEEEEeCCeEEEEEEEeCCCcc---------ccccccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQ-QYKATIGADFVTKELQMDDKLVTLQIWDTAGQE---------RFQSLGS 79 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~ 79 (210)
.+..+|+++|++|+|||||+++|++..+.. ...+.++.......+..++ ..+.+|||||+. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 456689999999999999999999876531 2222222222233333333 578999999986 2344456
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEE
Q 028305 80 AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYF 159 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
.+++.+|++++|+|.++ +.....++...... .+.|+++|+||+|+... .....+.+..+.+..+...++
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~------~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~~~~~~~~~i 152 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE------GKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIV 152 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS------SSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEE
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh------cCCCEEEEEECcccCcc--HHHHHHHHHHHHHhcCcCceE
Confidence 77889999999999976 22223333322221 16799999999999752 233445555565555534799
Q ss_pred EecCCCCCChHHHHHHHHHHHHhc
Q 028305 160 ETSAKEDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 160 ~~Sa~~~~~v~~~~~~l~~~~~~~ 183 (210)
++||++|.|++++++.+.+.+...
T Consensus 153 ~iSA~~g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 153 PISAETGLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp ECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred EEECCCCCCHHHHHHHHHHhCCcC
Confidence 999999999999999998876543
No 138
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.90 E-value=1.6e-25 Score=179.29 Aligned_cols=163 Identities=18% Similarity=0.197 Sum_probs=117.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEE
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVL 90 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~ 90 (210)
++++|+++|++++|||||+++|.+..+.....++.+.++....+...+ ...+.+|||||++.|...+..+++.+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 567899999999999999999997776655555555554443333321 2368999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHH---HHHc-CCCcEEEecCCCC
Q 028305 91 VYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEW---CAYR-GNIPYFETSAKED 166 (210)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~Sa~~~ 166 (210)
|+|+++.........| ..+.. . ++|+++|+||+|+.+...... ..+.... +..+ +..+++++||++|
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~~---~----~vPiIVViNKiDl~~~~~~~v-~~~l~~~~~~~e~~~~~~~iv~vSAktG 152 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAKD---A----HVPIVLAINKCDKAEADPEKV-KKELLAYDVVCEDYGGDVQAVHVSALTG 152 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHHT---T----TCCEEECCBSGGGTTTSCCSS-SSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred EEECCCCccHHHHHHH-HHHHH---c----CCcEEEEEecccccccchHHH-HHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence 9999986555444333 22221 1 779999999999975432222 1222111 1111 2357999999999
Q ss_pred CChHHHHHHHHHHHHhc
Q 028305 167 CNIDEAFLCVAEIALKN 183 (210)
Q Consensus 167 ~~v~~~~~~l~~~~~~~ 183 (210)
.|++++++++...+...
T Consensus 153 ~GI~eLle~I~~l~~~~ 169 (537)
T 3izy_P 153 ENMMALAEATIALAEML 169 (537)
T ss_dssp CSSHHHHHHHHHHHTTC
T ss_pred CCchhHHHHHHHhhhcc
Confidence 99999999999887543
No 139
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.90 E-value=5.5e-23 Score=161.48 Aligned_cols=165 Identities=19% Similarity=0.185 Sum_probs=113.4
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCc---CCCcccceeee--EEEEEEEEe-------------C--C----eEEE
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNK---FSQQYKATIGA--DFVTKELQM-------------D--D----KLVT 62 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~ 62 (210)
..++..++|+++|+.++|||||+++|.+.. +..+..++.++ .+....+.. . + ....
T Consensus 5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 84 (410)
T 1kk1_A 5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR 84 (410)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence 345778999999999999999999998542 23333343333 332222211 0 1 1367
Q ss_pred EEEEeCCCcccccccccccccCCcEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC
Q 028305 63 LQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQ----KTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS 138 (210)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~ 138 (210)
+.+|||||+++|.......+..+|++|+|+|+++. .+.+.+. .+... . ..|+++|+||+|+.+...
T Consensus 85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~-~-----~~~iivviNK~Dl~~~~~ 154 (410)
T 1kk1_A 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQII-G-----QKNIIIAQNKIELVDKEK 154 (410)
T ss_dssp EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHH-T-----CCCEEEEEECGGGSCHHH
T ss_pred EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc-C-----CCcEEEEEECccCCCHHH
Confidence 99999999999988888888899999999999964 3333332 22222 1 348999999999976321
Q ss_pred cccchHHHHHHHHHc--CCCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 139 RVVPQKKALEWCAYR--GNIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 139 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
.....+++..++... ...+++++||++|.|+++++++|.+.+.
T Consensus 155 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 155 ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 123344555555432 3478999999999999999999988665
No 140
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.89 E-value=1.4e-22 Score=160.11 Aligned_cols=158 Identities=17% Similarity=0.192 Sum_probs=110.1
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcC-------------------------------CCcccceeeeEEEEEEEEe
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKF-------------------------------SQQYKATIGADFVTKELQM 56 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 56 (210)
.....++|+++|++++|||||+++|+...- ..+...+.+++.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 345789999999999999999999964321 1122244555655555555
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCCCCCC-EEEEEe
Q 028305 57 DDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKT---FE---SLQNWREEFLKQADPGEHEACP-FVLLGN 129 (210)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~~~~~p-~ilv~~ 129 (210)
++ ..+.+|||||+++|...+..+++.+|++|+|+|+++... ++ .....+..+... ++| +++|+|
T Consensus 93 ~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-------~v~~iIvviN 163 (439)
T 3j2k_7 93 EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-------GVKHLIVLIN 163 (439)
T ss_pred CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-------CCCeEEEEee
Confidence 44 579999999999999999999999999999999987532 11 111111222111 566 999999
Q ss_pred cCCCCCCCC----cccchHHHHHHHHHcC-----CCcEEEecCCCCCChHHHHH
Q 028305 130 KIDTDGGSS----RVVPQKKALEWCAYRG-----NIPYFETSAKEDCNIDEAFL 174 (210)
Q Consensus 130 K~D~~~~~~----~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~~~~ 174 (210)
|+|+..... .....+++..++...+ ..+++++||++|.|+.++++
T Consensus 164 K~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 164 KMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 999964211 2233445555655554 35799999999999999766
No 141
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.89 E-value=2.3e-23 Score=164.88 Aligned_cols=155 Identities=24% Similarity=0.207 Sum_probs=105.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc--------ccc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG--------SAF 81 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 81 (210)
..++|+++|++|+|||||+|+|.+.... ....++++.+.....+..++ ..+.+|||||..++.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 5689999999999999999999977543 33445555555555566666 568999999976654333 335
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEe
Q 028305 82 YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFET 161 (210)
Q Consensus 82 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (210)
++.+|++++|+|.+++.+... ..|+..+. ..|+++|+||+|+.+..... ....+. ...+++++
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~---------~~piivV~NK~Dl~~~~~~~----~~~~~~---~~~~~i~i 363 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK---------HRPLILVMNKIDLVEKQLIT----SLEYPE---NITQIVHT 363 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT---------TSCEEEEEECTTSSCGGGST----TCCCCT---TCCCEEEE
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc---------CCcEEEEEECCCCCcchhhH----HHHHhc---cCCcEEEE
Confidence 788999999999998766554 34444432 35999999999997542111 111111 23689999
Q ss_pred cCCCCCChHHHHHHHHHHHHhcc
Q 028305 162 SAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 162 Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
||++|.|+++++++|.+.+....
T Consensus 364 SAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 364 AAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp BTTTTBSHHHHHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999886543
No 142
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.89 E-value=1.7e-22 Score=163.88 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=115.0
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCc--CCCc-------------ccceeeeE--EEEEEEEe-CCeEEEEEEEeCCC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNK--FSQQ-------------YKATIGAD--FVTKELQM-DDKLVTLQIWDTAG 70 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~-------------~~~~~~~~--~~~~~~~~-~~~~~~~~i~D~~g 70 (210)
.+...+|+++|+.++|||||+++|+... .... ...+.++. .....+.. ++..+.+++|||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 3567899999999999999999998532 1100 00111111 11111221 45568899999999
Q ss_pred cccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHH
Q 028305 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWC 150 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~ 150 (210)
+.+|......+++.+|++|+|+|+++.........|...... ++|+++|+||+|+.+.. ..+...++.
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~--------~ipiIvviNKiDl~~a~----~~~v~~el~ 150 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ--------DLVIIPVINKIDLPSAD----VDRVKKQIE 150 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT--------TCEEEEEEECTTSTTCC----HHHHHHHHH
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC--------CCCEEEEEeccCccccC----HHHHHHHHH
Confidence 999998888999999999999999998887777777655431 78999999999997642 223344455
Q ss_pred HHcCC--CcEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 151 AYRGN--IPYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 151 ~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
...+. ..++++||++|.|++++++++.+.+..
T Consensus 151 ~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 151 EVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 54442 249999999999999999999987754
No 143
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.89 E-value=1.2e-22 Score=164.90 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=111.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCc--CCC---------c----ccceeeeEEEEEEEEe---CCeEEEEEEEeCCCcc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNK--FSQ---------Q----YKATIGADFVTKELQM---DDKLVTLQIWDTAGQE 72 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~---------~----~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~ 72 (210)
...+|+++|+.++|||||+++|+... ... . ...+.++......+.+ ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 56899999999999999999998532 110 0 0111111111112222 5567899999999999
Q ss_pred cccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH
Q 028305 73 RFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY 152 (210)
Q Consensus 73 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~ 152 (210)
+|...+..+++.+|++|+|+|+++.........|...... ++|+++|+||+|+.+.. ..+...++...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~--------~ipiIvViNKiDl~~a~----~~~v~~ei~~~ 150 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM--------DLEVVPVLNKIDLPAAD----PERVAEEIEDI 150 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT--------TCEEEEEEECTTSTTCC----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--------CCCEEEeeeccCccccc----HHHHHHHHHHH
Confidence 9999999999999999999999998777777777655432 77999999999997642 23333444444
Q ss_pred cCC--CcEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 153 RGN--IPYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 153 ~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
.+. ..++++||++|.|++++++++.+.+..
T Consensus 151 lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 151 VGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp TCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred hCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 441 359999999999999999999988754
No 144
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=1.9e-22 Score=159.66 Aligned_cols=163 Identities=21% Similarity=0.180 Sum_probs=107.9
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc----------
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG---------- 78 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---------- 78 (210)
...++|+++|++|||||||+|+|++.... ....++++.+.....+..++. .+.+|||+|........
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 45799999999999999999999987642 234455556665666777775 57899999974332211
Q ss_pred --cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHH-HHHH---H
Q 028305 79 --SAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKAL-EWCA---Y 152 (210)
Q Consensus 79 --~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~-~~~~---~ 152 (210)
..+++.+|++++++|+++..+.... .+...+... +.|+++|+||+|+.+. .....++.. .+.+ .
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~~-------~~~~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~ 325 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMERR-------GRASVVVFNKWDLVVH--REKRYDEFTKLFREKLYF 325 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT-------TCEEEEEEECGGGSTT--GGGCHHHHHHHHHHHCGG
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHHc-------CCCEEEEEECccCCCc--hhhHHHHHHHHHHHHhcc
Confidence 2346678999999999886655442 222222221 6799999999999754 222222222 2222 2
Q ss_pred cCCCcEEEecCCCCCChHHHHHHHHHHHHhcc
Q 028305 153 RGNIPYFETSAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
....+++++||++|.|++++|+.+.+.+.+..
T Consensus 326 ~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 326 IDYSPLIFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp GTTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 23478999999999999999999998876653
No 145
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.89 E-value=1.5e-23 Score=156.44 Aligned_cols=164 Identities=16% Similarity=0.198 Sum_probs=94.9
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCC-Ccc-------cceeeeEEEEEEEEeCCeEEEEEEEeCCCcccc-----
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQY-------KATIGADFVTKELQMDDKLVTLQIWDTAGQERF----- 74 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----- 74 (210)
++...++|+|+|.+|+|||||+|+|++.... ..+ .++.+.+.....+..++..+.+.+|||||..+.
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~ 83 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 83 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence 4556899999999999999999998765543 232 455666666666666666679999999997322
Q ss_pred --cccc-------cccc-------------cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCC
Q 028305 75 --QSLG-------SAFY-------------RGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132 (210)
Q Consensus 75 --~~~~-------~~~~-------------~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D 132 (210)
..+. ..++ ..+|+++++++.+.......-..++..+.. ++|+++|+||+|
T Consensus 84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~--------~~pvi~V~nK~D 155 (274)
T 3t5d_A 84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--------KVNIIPLIAKAD 155 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT--------TSCEEEEESSGG
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc--------cCCEEEEEeccC
Confidence 1111 1122 237799999977653222222334444422 679999999999
Q ss_pred CCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHH
Q 028305 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
+..........+.+...+...+ +.++.+|+.++.|+++++++|.+.+
T Consensus 156 ~~~~~e~~~~~~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 156 TLTPEECQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTT-CCCCCC-----------CHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHHhcCC
Confidence 8653222333344555555556 7899999999999999999988764
No 146
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=2.5e-22 Score=148.76 Aligned_cols=170 Identities=16% Similarity=0.219 Sum_probs=107.3
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCc-CCCcccce-eeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc--------
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNK-FSQQYKAT-IGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG-------- 78 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------- 78 (210)
....++|+|+|++|+|||||+++|++.. +.....++ ++..........++ ..+.+|||||+..+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 4467999999999999999999999876 43333333 44444444555555 569999999977654322
Q ss_pred ---cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEe-cCCCCCCCCccc----chHHHHHHH
Q 028305 79 ---SAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGN-KIDTDGGSSRVV----PQKKALEWC 150 (210)
Q Consensus 79 ---~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~-K~D~~~~~~~~~----~~~~~~~~~ 150 (210)
..+++.+|++++|+|+++..... ..++..+....... ...|.++|+| |+|+........ ..+++..++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCch--hhccEEEEEEcccccCCccHHHHHHhcchHHHHHHH
Confidence 22568899999999998622211 12223333321110 0236666666 999974310000 013344455
Q ss_pred HHcCCCc--E--EEecCCCCCChHHHHHHHHHHHHhcc
Q 028305 151 AYRGNIP--Y--FETSAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 151 ~~~~~~~--~--~~~Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
...+... + +++||++|.|++++|++|.+.+....
T Consensus 173 ~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 173 AACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 5554211 2 78999999999999999999887643
No 147
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.89 E-value=7.4e-22 Score=152.14 Aligned_cols=163 Identities=19% Similarity=0.122 Sum_probs=109.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc---------ccccccccccC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER---------FQSLGSAFYRG 84 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~ 84 (210)
.|+++|++|+|||||+|+|.+........++.+.+.....+.+++ ..+.+|||+|... +... ...+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHHHh
Confidence 499999999999999999998776444445555566667777777 4689999999622 2222 234678
Q ss_pred CcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc-C-CCcEEE
Q 028305 85 ADCCVLVYDVNVQK--TFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR-G-NIPYFE 160 (210)
Q Consensus 85 ~d~vi~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 160 (210)
+|++++|+|++++. ....+..|...+..... .+.|+++|+||+|+.+.. .....+.+..++... . ..++++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~----~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGV----SGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC----CSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc----CCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcEEE
Confidence 99999999999876 55555556555544322 267999999999997542 111112232333443 2 246899
Q ss_pred ecCCCCCChHHHHHHHHHHHHhcc
Q 028305 161 TSAKEDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~~~~~~ 184 (210)
+||++|.|++++++.|.+.+....
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EECCCCcCHHHHHHHHHHHhcccC
Confidence 999999999999999998776543
No 148
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.89 E-value=4.8e-24 Score=168.53 Aligned_cols=164 Identities=15% Similarity=0.166 Sum_probs=107.5
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhC--cCCCc-----------------------------ccceeeeEEEEEEEEe
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYN--KFSQQ-----------------------------YKATIGADFVTKELQM 56 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~ 56 (210)
.....++|+++|++++|||||+++|+.. .+... ...+.+++.....+..
T Consensus 2 ~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~ 81 (435)
T 1jny_A 2 SQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET 81 (435)
T ss_dssp --CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC
T ss_pred CCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec
Confidence 3457899999999999999999999864 22211 0123333333333333
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-CEEEEEecCCCCC
Q 028305 57 DDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEAC-PFVLLGNKIDTDG 135 (210)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~-p~ilv~~K~D~~~ 135 (210)
....+.+|||||+.+|...+..+++.+|++|+|+|+++ .+|+....|..+...+.......++ |+++|+||+|+.+
T Consensus 82 --~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 82 --KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp --SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred --CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 34679999999999999888999999999999999998 6666443322222211100000133 6999999999976
Q ss_pred CCC----cccchHHHHHHHHHcC----CCcEEEecCCCCCChHHHHH
Q 028305 136 GSS----RVVPQKKALEWCAYRG----NIPYFETSAKEDCNIDEAFL 174 (210)
Q Consensus 136 ~~~----~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~~~ 174 (210)
... .....+++..++...+ ..+++++||++|.|+.++++
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 311 1334566777777665 36799999999999986654
No 149
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=2.7e-21 Score=141.52 Aligned_cols=170 Identities=16% Similarity=0.162 Sum_probs=107.4
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccc--eeeeEEEEEEEEeCCeEEEEEEEeCCCcc-----------c
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKA--TIGADFVTKELQMDDKLVTLQIWDTAGQE-----------R 73 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~ 73 (210)
......++|+|+|++|+|||||+++|++..+.....+ +.+..........++ ..+.+|||||.. .
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHH
Confidence 3456789999999999999999999998877644444 444555555566666 468999999943 3
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcc----cchHHHHHH
Q 028305 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRV----VPQKKALEW 149 (210)
Q Consensus 74 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~----~~~~~~~~~ 149 (210)
+.......++.+|++|+|+|+++....+ ..|+..+....... ...|+++|+||+|+....... ...+.+..+
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l 177 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL 177 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence 4444445567789999999987643321 22222222211000 045999999999986542111 112456777
Q ss_pred HHHcCCCcEEEecCCCC-----CChHHHHHHHHHHHHhc
Q 028305 150 CAYRGNIPYFETSAKED-----CNIDEAFLCVAEIALKN 183 (210)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~-----~~v~~~~~~l~~~~~~~ 183 (210)
++..+ ..++.+++..+ .++.++|..+.+.+.+.
T Consensus 178 ~~~~~-~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 178 MDIFG-DRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp HHHHS-SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcC-CEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 77777 57777776643 68999999888877654
No 150
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.88 E-value=1.8e-22 Score=162.23 Aligned_cols=120 Identities=17% Similarity=0.202 Sum_probs=86.2
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhhCc------------------CCC----cccceeeeEEEEEEEEeCCeEEEEE
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVYNK------------------FSQ----QYKATIGADFVTKELQMDDKLVTLQ 64 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (210)
.......+|+|+|++|+|||||+++|+... ... ....+.+.......+...+ ..+.
T Consensus 8 ~~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~ 85 (528)
T 3tr5_A 8 KQTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLIN 85 (528)
T ss_dssp HHHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEE
T ss_pred hhhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEE
Confidence 334568899999999999999999996211 100 0012222222233344444 6799
Q ss_pred EEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 65 IWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
+|||||+.++......+++.+|++|+|+|+++.........| ..+... ++|+++|+||+|+...
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~~-------~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 86 LLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRLR-------HTPIMTFINKMDRDTR 149 (528)
T ss_dssp EECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHTT-------TCCEEEEEECTTSCCS
T ss_pred EEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHHc-------CCCEEEEEeCCCCccc
Confidence 999999999999999999999999999999987766665444 333321 7899999999999654
No 151
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=2.7e-23 Score=164.39 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=100.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcc--------ccccccccccc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE--------RFQSLGSAFYR 83 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~ 83 (210)
++|+++|.+|+|||||+|+|++..+. ....++++.+.........+ ..+.+|||||+. .+......+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999999987664 23334444454444444444 569999999975 45566677789
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecC
Q 028305 84 GADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSA 163 (210)
Q Consensus 84 ~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (210)
.+|++++|+|..++.+... .++..+.+. .++|+++|+||+|+..... +...+. ..+...++++||
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~~------~~~pvilv~NK~D~~~~~~------~~~~~~-~lg~~~~~~iSA 146 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILYR------TKKPVVLAVNKLDNTEMRA------NIYDFY-SLGFGEPYPISG 146 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHTT------CCSCEEEEEECCCC-----------CCCSSG-GGSSCCCEECBT
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHHH------cCCCEEEEEECccCccchh------hHHHHH-HcCCCCeEEEeC
Confidence 9999999999998766543 233333321 2779999999999865311 111122 234347899999
Q ss_pred CCCCChHHHHHHHHHHHHhc
Q 028305 164 KEDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~~~~~~ 183 (210)
++|.|+.++++++.+.+.+.
T Consensus 147 ~~g~gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 147 THGLGLGDLLDAVAEHFKNI 166 (436)
T ss_dssp TTTBTHHHHHHHHHHTGGGC
T ss_pred cCCCChHHHHHHHHHhcCcc
Confidence 99999999999999887643
No 152
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.88 E-value=3.6e-22 Score=159.74 Aligned_cols=156 Identities=18% Similarity=0.187 Sum_probs=100.7
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCC-------------------------------CcccceeeeEEEEEEEEeC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFS-------------------------------QQYKATIGADFVTKELQMD 57 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 57 (210)
....++|+++|.+++|||||+++|+..... .....+.+.+.....+..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~- 108 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST- 108 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-
Confidence 356799999999999999999999755111 111122333333333333
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHH-----HHHHHHHHHHhcCCCCCCCCCEEEEEecCC
Q 028305 58 DKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFES-----LQNWREEFLKQADPGEHEACPFVLLGNKID 132 (210)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~-----~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D 132 (210)
....+.+|||||++++......+++.+|++|+|+|++++.++.. ...+...+..... ..|+++|+||+|
T Consensus 109 -~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-----~~~iIvviNK~D 182 (483)
T 3p26_A 109 -HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IHNLIIAMNKMD 182 (483)
T ss_dssp -SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-----CCCEEEEEECGG
T ss_pred -CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-----CCcEEEEEECcC
Confidence 34679999999999999999999999999999999998654322 1111122222221 246999999999
Q ss_pred CCCCCC--cccchHHHHHHHHHcC----CCcEEEecCCCCCChHH
Q 028305 133 TDGGSS--RVVPQKKALEWCAYRG----NIPYFETSAKEDCNIDE 171 (210)
Q Consensus 133 ~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~ 171 (210)
+.+... .....+++..++...+ ..+++++||++|.|+.+
T Consensus 183 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 183 NVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 975311 1122334444444443 26799999999999985
No 153
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=8.8e-23 Score=144.59 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=87.9
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCC---cccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccC-
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQ---QYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRG- 84 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~- 84 (210)
....++|+|+|++|||||||+++|.+..+.. ...++.+.+ .....+.+|||||+..+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C---------CCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee---------ecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 3567899999999999999999999887643 122222111 133568999999999888777777765
Q ss_pred ---CcEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 85 ---ADCCVLVYDVN-VQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 85 ---~d~vi~v~d~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
+|++++|+|++ ++.++..+..|+..+..........++|+++|+||+|+.+.
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999999 88999998888877765421101126899999999999765
No 154
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.87 E-value=2.3e-22 Score=157.21 Aligned_cols=161 Identities=16% Similarity=0.084 Sum_probs=111.4
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCc-------CCC---------cccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNK-------FSQ---------QYKATIGADFVTKELQMDDKLVTLQIWDTAGQERF 74 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (210)
+.++|+++|++++|||||+++|.+.. +.. +...+.+++... ..+......+.+|||||+.+|
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~--~~~~~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAH--VEYSTAARHYAHTDCPGHADY 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEE--EEEECSSCEEEEEECSSHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeee--EEeccCCeEEEEEECCChHHH
Confidence 56899999999999999999998631 110 012223333322 233333467999999999999
Q ss_pred cccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCC-EEEEEecCCCCCCCC-cccchHHHHHHHHH
Q 028305 75 QSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACP-FVLLGNKIDTDGGSS-RVVPQKKALEWCAY 152 (210)
Q Consensus 75 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K~D~~~~~~-~~~~~~~~~~~~~~ 152 (210)
......+++.+|++|+|+|+++.........| ..+... ++| +++|+||+|+.+... .+...+++..++..
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~-------~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 151 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI-------GVEHVVVYVNKADAVQDSEMVELVELEIRELLTE 151 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT-------TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc-------CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999986544433333 333221 678 789999999975211 12234566777776
Q ss_pred cC----CCcEEEecCCCCCC----------hHHHHHHHHHHHH
Q 028305 153 RG----NIPYFETSAKEDCN----------IDEAFLCVAEIAL 181 (210)
Q Consensus 153 ~~----~~~~~~~Sa~~~~~----------v~~~~~~l~~~~~ 181 (210)
.+ ..+++++||++|.| +.++++.|.+.+.
T Consensus 152 ~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 65 36899999999765 7788888776554
No 155
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.87 E-value=3.7e-22 Score=150.86 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=99.0
Q ss_pred EEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhcCCCCCCC
Q 028305 52 KELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVN----------VQKTFESLQNWREEFLKQADPGEHEA 121 (210)
Q Consensus 52 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~l~~~~~~~~~~~ 121 (210)
..+..++ +.+.+||++|++.++..+..++++++++|+|+|++ +..++.....|+..+.... ...+
T Consensus 160 ~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~---~~~~ 234 (327)
T 3ohm_A 160 YPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP---WFQN 234 (327)
T ss_dssp EEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG---GGTT
T ss_pred EEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh---ccCC
Confidence 3344444 88999999999999999999999999999999765 5667777777777765432 1237
Q ss_pred CCEEEEEecCCCCCCC--------------CcccchHHHHHHHH---------HcCCCcEEEecCCCCCChHHHHHHHHH
Q 028305 122 CPFVLLGNKIDTDGGS--------------SRVVPQKKALEWCA---------YRGNIPYFETSAKEDCNIDEAFLCVAE 178 (210)
Q Consensus 122 ~p~ilv~~K~D~~~~~--------------~~~~~~~~~~~~~~---------~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 178 (210)
+|+++++||+|+.+.. ......+++..++. ....+.+++|||+++.||+++|..+.+
T Consensus 235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 8999999999985320 01345666766642 112367899999999999999999999
Q ss_pred HHHhcccc
Q 028305 179 IALKNEHK 186 (210)
Q Consensus 179 ~~~~~~~~ 186 (210)
.+++.+.+
T Consensus 315 ~Il~~~l~ 322 (327)
T 3ohm_A 315 TILQLNLK 322 (327)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhHH
Confidence 99987664
No 156
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.87 E-value=4.8e-24 Score=169.49 Aligned_cols=157 Identities=22% Similarity=0.232 Sum_probs=108.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEE
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCV 89 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi 89 (210)
+++.+|+++|++++|||||+++|....+.....++.+.+.....+..++ ..+.+|||||++.|...+...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4578999999999999999999987665544334443333222333333 46899999999999999999999999999
Q ss_pred EEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchH--HHHHHHHHc-CCCcEEEecC
Q 028305 90 LVYDVNVQ---KTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQK--KALEWCAYR-GNIPYFETSA 163 (210)
Q Consensus 90 ~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~Sa 163 (210)
+|+|+++. .+.+.+ ..+... ++|+++++||+|+.+........+ +...+...+ +..+++++||
T Consensus 80 LVVda~~g~~~qT~e~l----~~~~~~-------~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSA 148 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI----QHAKAA-------QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSA 148 (501)
T ss_dssp EEEETTTBSCTTTHHHH----HHHHHT-------TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCT
T ss_pred EEeecccCccHHHHHHH----HHHHhc-------CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEee
Confidence 99999884 333332 222211 779999999999975321111110 000011111 2368999999
Q ss_pred CCCCChHHHHHHHHHH
Q 028305 164 KEDCNIDEAFLCVAEI 179 (210)
Q Consensus 164 ~~~~~v~~~~~~l~~~ 179 (210)
++|.|++++|+++...
T Consensus 149 ktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 149 KAGTGIDELLDAILLQ 164 (501)
T ss_dssp TTCTTCTTHHHHTTTT
T ss_pred eeccCcchhhhhhhhh
Confidence 9999999999998753
No 157
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.87 E-value=7.5e-22 Score=160.43 Aligned_cols=163 Identities=25% Similarity=0.240 Sum_probs=107.8
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeC----------------CeEEEEEEEeCCCccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMD----------------DKLVTLQIWDTAGQER 73 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~~~ 73 (210)
.+.++|+++|++++|||||+++|.+..+......+.+.+........+ .....+.+|||||+.+
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 356899999999999999999998765543221111111111111100 0112589999999999
Q ss_pred ccccccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcc----------
Q 028305 74 FQSLGSAFYRGADCCVLVYDVNV---QKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRV---------- 140 (210)
Q Consensus 74 ~~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~---------- 140 (210)
|...+..+++.+|++|+|+|+++ +.+++.+.. +.. .++|+++|+||+|+.+.....
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~-------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa 151 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM-------YRTPFVVAANKIDRIHGWRVHEGRPFMETFS 151 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH-------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH-------cCCeEEEEecccccccccccccCCchHHHHH
Confidence 99999999999999999999998 555554432 222 178999999999996421100
Q ss_pred --------cchH---HHHHHHHHc--------------CCCcEEEecCCCCCChHHHHHHHHHHHHhc
Q 028305 141 --------VPQK---KALEWCAYR--------------GNIPYFETSAKEDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 141 --------~~~~---~~~~~~~~~--------------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 183 (210)
...+ +........ ...+++++||++|.|+++++++|...+...
T Consensus 152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 0000 111112211 224799999999999999999999887644
No 158
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=1.1e-21 Score=150.20 Aligned_cols=130 Identities=14% Similarity=0.157 Sum_probs=101.0
Q ss_pred EEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCC
Q 028305 52 KELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNV----------QKTFESLQNWREEFLKQADPGEHEA 121 (210)
Q Consensus 52 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~l~~~~~~~~~~~ 121 (210)
..+.++ .+.+.+||++|++.++..+..++++++++|+|+|+++ ..++.....|+..+..... ..+
T Consensus 186 ~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~---~~~ 260 (353)
T 1cip_A 186 THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW---FTD 260 (353)
T ss_dssp EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG---GTT
T ss_pred EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc---ccC
Confidence 334444 4789999999999999999999999999999999999 4678888888887765321 127
Q ss_pred CCEEEEEecCCCCCCC-------------CcccchHHHHHHHHH----------cCCCcEEEecCCCCCChHHHHHHHHH
Q 028305 122 CPFVLLGNKIDTDGGS-------------SRVVPQKKALEWCAY----------RGNIPYFETSAKEDCNIDEAFLCVAE 178 (210)
Q Consensus 122 ~p~ilv~~K~D~~~~~-------------~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~l~~ 178 (210)
+|++||+||+|+.+.. ......+++..++.. ...+.+++|||++|.||+++|+++.+
T Consensus 261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~ 340 (353)
T 1cip_A 261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 340 (353)
T ss_dssp SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence 8999999999984210 002456777777762 23478999999999999999999999
Q ss_pred HHHhcccc
Q 028305 179 IALKNEHK 186 (210)
Q Consensus 179 ~~~~~~~~ 186 (210)
.+.+.+.+
T Consensus 341 ~i~~~~l~ 348 (353)
T 1cip_A 341 VIIKNNLK 348 (353)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 99877653
No 159
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.87 E-value=5.5e-22 Score=153.27 Aligned_cols=150 Identities=13% Similarity=-0.021 Sum_probs=108.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEE
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYD 93 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d 93 (210)
+|+++|++++|||||+++|+ ..+.+++.....+... ...+.+|||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 2233333333333333 3569999999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCCE-EEEEe-cCCCCCCCCcccchHHHHHHHHHcC--CCcEEE--ecCCC--
Q 028305 94 VNVQKTFESLQNWREEFLKQADPGEHEACPF-VLLGN-KIDTDGGSSRVVPQKKALEWCAYRG--NIPYFE--TSAKE-- 165 (210)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~-ilv~~-K~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~Sa~~-- 165 (210)
+. ........++..+... ++|. ++++| |+|+ +........+++..++...+ ..++++ +||++
T Consensus 93 -~~-g~~~qt~e~~~~~~~~-------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~ 162 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL-------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKN 162 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT-------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSS
T ss_pred -CC-CCcHHHHHHHHHHHHc-------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCc
Confidence 53 3344444554444332 5677 89999 9999 42111112345555555443 368999 99999
Q ss_pred -CCChHHHHHHHHHHHHhc
Q 028305 166 -DCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 166 -~~~v~~~~~~l~~~~~~~ 183 (210)
|.|++++++.|.+.+...
T Consensus 163 ~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 163 PFEGVDELKARINEVAEKI 181 (370)
T ss_dssp TTTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhcccc
Confidence 999999999999887643
No 160
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=6.2e-22 Score=145.43 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=105.9
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccce--eeeEEEEEEEEeCCeEEEEEEEeCCCc--------ccccccc
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKAT--IGADFVTKELQMDDKLVTLQIWDTAGQ--------ERFQSLG 78 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~ 78 (210)
....++|+|+|.+|+|||||+|+|++.........+ ++..........++ ..+.+|||||. +.+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 457899999999999999999999987765332222 33334444455555 56899999996 3333333
Q ss_pred cccc----cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccc----hHHHHHHH
Q 028305 79 SAFY----RGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVP----QKKALEWC 150 (210)
Q Consensus 79 ~~~~----~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~----~~~~~~~~ 150 (210)
...+ +.+|++++|+|+++....+ ..++..+...... ...+.|+++|+||.|+.+....... .+.+..+.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQD--QQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHH--HHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHH--HHHHHHHHHHhCh-hhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHH
Confidence 3333 8899999999998532211 2223333332111 1115699999999999754211111 13466777
Q ss_pred HHcCCCcEEEecCCC-----CCChHHHHHHHHHHHHhc
Q 028305 151 AYRGNIPYFETSAKE-----DCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 151 ~~~~~~~~~~~Sa~~-----~~~v~~~~~~l~~~~~~~ 183 (210)
+..+ ..+...++.. +.|+.++++.+.+.+.+.
T Consensus 173 ~~~g-~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 173 AECG-GRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HHTT-TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcC-CeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 7766 5666666544 589999999998887764
No 161
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.87 E-value=1.2e-22 Score=159.40 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=104.4
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhC--------cCCCc---------ccceeeeEEEEEEEEeCCeEEEEEEEeCCC
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYN--------KFSQQ---------YKATIGADFVTKELQMDDKLVTLQIWDTAG 70 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (210)
.....++|+++|++++|||||+++|.+. .+... ...+.+++..... ++.....+.+|||||
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~--~~~~~~~~~iiDtpG 84 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVE--YETAKRHYSHVDCPG 84 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEE--EECSSCEEEEEECCC
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeE--eccCCeEEEEEECCC
Confidence 4567899999999999999999999863 11110 1222333332223 333346789999999
Q ss_pred cccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCC-EEEEEecCCCCCCCC-cccchHHHHH
Q 028305 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACP-FVLLGNKIDTDGGSS-RVVPQKKALE 148 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K~D~~~~~~-~~~~~~~~~~ 148 (210)
+++|......+++.+|++|+|+|+++...... ..++..+... ++| +++|+||+|+.+... .+...+++..
T Consensus 85 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~~-------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~ 156 (405)
T 2c78_A 85 HADYIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV-------GVPYIVVFMNKVDMVDDPELLDLVEMEVRD 156 (405)
T ss_dssp SGGGHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT-------TCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCEEEEEEECccccCcHHHHHHHHHHHHH
Confidence 99998888888999999999999988654333 4444444332 668 899999999975211 1223345666
Q ss_pred HHHHcC----CCcEEEecCCCCCC
Q 028305 149 WCAYRG----NIPYFETSAKEDCN 168 (210)
Q Consensus 149 ~~~~~~----~~~~~~~Sa~~~~~ 168 (210)
++...+ ..+++++||++|.|
T Consensus 157 ~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHhcccccCCCEEEccHHHhhh
Confidence 776665 36899999999987
No 162
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.3e-22 Score=156.49 Aligned_cols=167 Identities=19% Similarity=0.263 Sum_probs=90.2
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCc-CCCcc--------cceeeeEEEEEEEEeCCeEEEEEEEeCCCc-------c
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNK-FSQQY--------KATIGADFVTKELQMDDKLVTLQIWDTAGQ-------E 72 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~ 72 (210)
+...++|+|+|++|+|||||+++|++.. +...+ .++.+.......+..++..+.+.+|||||+ +
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 4567999999999999999999987543 22222 134444444444445666778999999998 5
Q ss_pred ccccccc-------ccccCCcEE-----------EEEEECCC-hhhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCC
Q 028305 73 RFQSLGS-------AFYRGADCC-----------VLVYDVNV-QKTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKID 132 (210)
Q Consensus 73 ~~~~~~~-------~~~~~~d~v-----------i~v~d~~~-~~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D 132 (210)
.+..+.. .+++.++++ +++|++++ ..++..+. .|+..+ . .++|+|+|+||+|
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~----~~~piIlV~NK~D 185 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----H----NKVNIVPVIAKAD 185 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----C----S-SCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----c----cCCCEEEEEECCC
Confidence 5555544 444333221 24444443 33444433 333332 2 2789999999999
Q ss_pred CCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
+..........+++..++...+ ++++++||++|.+ ++.|..+.+.+.+..+
T Consensus 186 l~~~~ev~~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 186 TLTLKERERLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp SSCHHHHHHHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 9754111112256666666666 7999999999999 9999999999877655
No 163
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=1.3e-21 Score=154.68 Aligned_cols=156 Identities=16% Similarity=0.176 Sum_probs=105.7
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCC---Cc---------cc---------------------ceeeeEEEEEEEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFS---QQ---------YK---------------------ATIGADFVTKELQ 55 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~---------~~---------------------~~~~~~~~~~~~~ 55 (210)
....++|+++|++++|||||+++|+..... .. .. .+.+++.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 456799999999999999999999855311 00 00 1122222222233
Q ss_pred eCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-CEEEEEecCCCC
Q 028305 56 MDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEAC-PFVLLGNKIDTD 134 (210)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~-p~ilv~~K~D~~ 134 (210)
.+ ...+.+|||||+++|......++..+|++|+|+|+++...... ..++..+... ++ |+++|+||+|+.
T Consensus 101 ~~--~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~~-------~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 101 TA--KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL-------GIKHIVVAINKMDLN 170 (434)
T ss_dssp CS--SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT-------TCCEEEEEEECTTTT
T ss_pred cC--CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCeEEEEEEcCcCC
Confidence 33 3679999999999998888888999999999999998643332 2333333221 33 699999999997
Q ss_pred CCCCc--ccchHHHHHHHHHcC----CCcEEEecCCCCCChHHHHH
Q 028305 135 GGSSR--VVPQKKALEWCAYRG----NIPYFETSAKEDCNIDEAFL 174 (210)
Q Consensus 135 ~~~~~--~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~~~ 174 (210)
+.... ....++...+++..+ ..+++++||++|.|+.++++
T Consensus 171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 63211 123455666666655 26799999999999998543
No 164
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.86 E-value=1.2e-22 Score=161.67 Aligned_cols=160 Identities=16% Similarity=0.175 Sum_probs=94.2
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhC--cCCC-----------------------------cccceeeeEEEEEEEEe
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYN--KFSQ-----------------------------QYKATIGADFVTKELQM 56 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~ 56 (210)
.....++|+++|++++|||||+++|+.. .+.. +...+.+++.....+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 3467899999999999999999999742 2110 00122233333233444
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCCCCCC-EEEEEecCC
Q 028305 57 DDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQK---TFESLQNWREEFLKQADPGEHEACP-FVLLGNKID 132 (210)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K~D 132 (210)
++ ..+.+|||||+++|...+...+..+|++|+|+|+++.. +|+...++...+...... ++| +++|+||+|
T Consensus 119 ~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~----~vp~iivviNK~D 192 (467)
T 1r5b_A 119 EH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ----GINHLVVVINKMD 192 (467)
T ss_dssp SS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT----TCSSEEEEEECTT
T ss_pred CC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc----CCCEEEEEEECcc
Confidence 43 67999999999999999888999999999999999862 232212222222111111 667 999999999
Q ss_pred CCCCCC----cccchHHHHHHHHHc-C-----CCcEEEecCCCCCChHHHH
Q 028305 133 TDGGSS----RVVPQKKALEWCAYR-G-----NIPYFETSAKEDCNIDEAF 173 (210)
Q Consensus 133 ~~~~~~----~~~~~~~~~~~~~~~-~-----~~~~~~~Sa~~~~~v~~~~ 173 (210)
+.+... .....+++..++... + ..+++++||++|.|+.+++
T Consensus 193 l~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 193 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 964211 123344566666655 3 2569999999999998866
No 165
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.85 E-value=8.6e-22 Score=156.41 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=105.4
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhC--cCCC-----------------------------cccceeeeEEEEEEEEeC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYN--KFSQ-----------------------------QYKATIGADFVTKELQMD 57 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 57 (210)
....++|+++|++++|||||+++|++. .+.. +...+.+++.....+...
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 346799999999999999999999864 1110 001223333323333333
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hHH---HHHHHHHHHHHhcCCCCCCCCC-EEEEEec
Q 028305 58 DKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQK---TFE---SLQNWREEFLKQADPGEHEACP-FVLLGNK 130 (210)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K 130 (210)
...+.+|||||+.+|......++..+|++|+|+|+++.. +|+ ....++..+.. . ++| +++|+||
T Consensus 84 --~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~------~v~~iivviNK 154 (458)
T 1f60_A 84 --KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-L------GVRQLIVAVNK 154 (458)
T ss_dssp --SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-T------TCCEEEEEEEC
T ss_pred --CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-c------CCCeEEEEEEc
Confidence 367999999999999988889999999999999998753 221 11222222221 1 555 9999999
Q ss_pred CCCCCCCC--cccchHHHHHHHHHcCC----CcEEEecCCCCCChHHH
Q 028305 131 IDTDGGSS--RVVPQKKALEWCAYRGN----IPYFETSAKEDCNIDEA 172 (210)
Q Consensus 131 ~D~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~v~~~ 172 (210)
+|+.+... .....+++..++...+. .+++++||++|.|+.++
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 99974211 12344566666666652 68999999999999755
No 166
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.85 E-value=2.8e-21 Score=138.65 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=101.4
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc----------cccc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER----------FQSL 77 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~ 77 (210)
......+|+++|++|||||||+++|.+..+.....++.+.......+..++ .+.+|||||... +...
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence 345678999999999999999999997764333333333333223333333 478999999742 2222
Q ss_pred ccccc---cCCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHH
Q 028305 78 GSAFY---RGADCCVLVYDVNVQKTFES--LQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAY 152 (210)
Q Consensus 78 ~~~~~---~~~d~vi~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~ 152 (210)
...++ ..++++++++|++++.+... +..|... .++|+++|+||+|+.+...++...+.+..++..
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~----------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~ 168 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD----------SNIAVLVLLTKADKLASGARKAQLNMVREAVLA 168 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH----------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH----------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh
Confidence 22333 46899999999988655432 2222221 167999999999987542222223455555554
Q ss_pred cC-CCcEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 153 RG-NIPYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 153 ~~-~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
.+ ...++++|++++.|++++++.|.+.+.+
T Consensus 169 ~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 169 FNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 43 3568899999999999999999887644
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.1e-21 Score=160.19 Aligned_cols=158 Identities=20% Similarity=0.222 Sum_probs=104.6
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcc-------------------------------cceeeeEEEEEEEEeC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQY-------------------------------KATIGADFVTKELQMD 57 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 57 (210)
....++|+++|++|+|||||+++|++....... .++++++.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 356899999999999999999999865322111 1233333333334443
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCCCCC-CCEEEEEecCCC
Q 028305 58 DKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKT---FESLQNWREEFLKQADPGEHEA-CPFVLLGNKIDT 133 (210)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~~~~~~~~~~l~~~~~~~~~~~-~p~ilv~~K~D~ 133 (210)
...+.+|||||++++......+++.+|++|+|+|++++.. +....++...+...... + .|+|+|+||+|+
T Consensus 244 --~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l----gi~~iIVVvNKiDl 317 (611)
T 3izq_1 244 --RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL----GIHNLIIAMNKMDN 317 (611)
T ss_dssp --SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT----TCCEEEEEEECTTT
T ss_pred --CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc----CCCeEEEEEecccc
Confidence 3679999999999999999999999999999999987421 10011111111111111 3 359999999999
Q ss_pred CCCCC--cccchHHHHHHHHHcC----CCcEEEecCCCCCChHHH
Q 028305 134 DGGSS--RVVPQKKALEWCAYRG----NIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 134 ~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~ 172 (210)
.+... .....+++..++...+ ..+++++||++|.|+.++
T Consensus 318 ~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 318 VDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred cchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 76311 1222344455555444 268999999999999976
No 168
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.85 E-value=7.3e-21 Score=145.71 Aligned_cols=125 Identities=16% Similarity=0.177 Sum_probs=95.3
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEE
Q 028305 59 KLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVN----------VQKTFESLQNWREEFLKQADPGEHEACPFVLLG 128 (210)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~ 128 (210)
..+.+.+|||+|++.++..+..++++++++|+|||++ +..+++....|+..+..... ..++|++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~---~~~~piiLvg 257 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC---FEKTSFMLFL 257 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGG---GSSCEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccc---cCCCeEEEEE
Confidence 5689999999999999999999999999999999998 77889998888888765321 1278999999
Q ss_pred ecCCCCCCCC-------------------cccchHHHHHHHHH---------------cCCCcEEEecCCCCCChHHHHH
Q 028305 129 NKIDTDGGSS-------------------RVVPQKKALEWCAY---------------RGNIPYFETSAKEDCNIDEAFL 174 (210)
Q Consensus 129 ~K~D~~~~~~-------------------~~~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~~v~~~~~ 174 (210)
||+|+.+... .....+++..++.. .....+++|||+++.||+++|+
T Consensus 258 NK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~ 337 (354)
T 2xtz_A 258 NKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFK 337 (354)
T ss_dssp ECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHH
Confidence 9999843200 00124556665432 1224468999999999999999
Q ss_pred HHHHHHHhcccc
Q 028305 175 CVAEIALKNEHK 186 (210)
Q Consensus 175 ~l~~~~~~~~~~ 186 (210)
++.+.+.+.+.+
T Consensus 338 ~v~~~I~~~~l~ 349 (354)
T 2xtz_A 338 LVDETLRRRNLL 349 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999876653
No 169
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.84 E-value=5.9e-22 Score=161.43 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=84.0
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcC-------------------------------CCcccceeeeEEEEEEEEeC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKF-------------------------------SQQYKATIGADFVTKELQMD 57 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 57 (210)
....++|+++|++++|||||+++|+.... .....++++++.....+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 45789999999999999999999963210 0111233444444333333
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh---hH---HHHHHHHHHHHHhcCCCCCCCCC-EEEEEec
Q 028305 58 DKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQK---TF---ESLQNWREEFLKQADPGEHEACP-FVLLGNK 130 (210)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K 130 (210)
....+.||||||+.+|...+...++.+|++|+|+|++++. .+ ......+..+.. . ++| +|+|+||
T Consensus 253 -~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-l------gip~iIvviNK 324 (592)
T 3mca_A 253 -DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-L------GISEIVVSVNK 324 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-S------SCCCEEEEEEC
T ss_pred -CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-c------CCCeEEEEEec
Confidence 3467999999999999999999999999999999998632 11 011111122221 1 555 9999999
Q ss_pred CCCCCCCC--cccchHHHHHHH-HHcCC----CcEEEecCCCCCChH
Q 028305 131 IDTDGGSS--RVVPQKKALEWC-AYRGN----IPYFETSAKEDCNID 170 (210)
Q Consensus 131 ~D~~~~~~--~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~v~ 170 (210)
+|+.+... .....+++..++ ...+. .+++++||++|.|+.
T Consensus 325 iDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 325 LDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 99975311 122234444444 33342 369999999999998
No 170
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.84 E-value=7.1e-21 Score=161.79 Aligned_cols=166 Identities=14% Similarity=0.065 Sum_probs=110.6
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCc-------CCC-------cccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNK-------FSQ-------QYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (210)
.....++|+++|++++|||||+++|++.. +.. ......++++......++.....+.+|||||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 45678999999999999999999998631 000 0011112222112223333446799999999999
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCC-EEEEEecCCCCCCCC-cccchHHHHHHHH
Q 028305 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACP-FVLLGNKIDTDGGSS-RVVPQKKALEWCA 151 (210)
Q Consensus 74 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K~D~~~~~~-~~~~~~~~~~~~~ 151 (210)
|......+++.+|++|+|+|+++....+. ..++..+... ++| +|+|+||+|+.+... .+...+++..++.
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l-------gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk 443 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV-------GVPYIIVFLNKCDMVDDEELLELVEMEVRELLS 443 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH-------TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc-------CCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence 98888888999999999999998643332 2333333332 668 799999999975311 1223456667777
Q ss_pred HcC----CCcEEEecCCCC--------CChHHHHHHHHHHHH
Q 028305 152 YRG----NIPYFETSAKED--------CNIDEAFLCVAEIAL 181 (210)
Q Consensus 152 ~~~----~~~~~~~Sa~~~--------~~v~~~~~~l~~~~~ 181 (210)
..+ ..+++++||++| .|+.++++.|.+.+.
T Consensus 444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 665 368999999999 457777777766543
No 171
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=1.7e-21 Score=154.98 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=100.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCC--------cccccccccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAG--------QERFQSLGSA 80 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~ 80 (210)
....+|+++|.+|||||||+|+|++..+. ....++.+.+... .........+.+||||| ++.+......
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~--~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIY--SSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEE--EECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEE--EEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 34679999999999999999999987654 2223334333333 33333446799999999 6667777778
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 81 FYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 81 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
+++.+|++|+|+|..+..... ..++..+.+. .++|+++|+||+|+.... ....++. ..+...+++
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~~------~~~pvilV~NK~D~~~~~------~~~~e~~-~lg~~~~~~ 163 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAA--DEEVAKILYR------TKKPVVLAVNKLDNTEMR------ANIYDFY-SLGFGEPYP 163 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHH--HHHHHHHHTT------CCSCEEEEEECC---------------CCSG-GGSSSSEEE
T ss_pred hHhhCCEEEEEEeCCCCCChH--HHHHHHHHHH------cCCCEEEEEECccchhhh------hhHHHHH-HcCCCceEE
Confidence 889999999999987643322 2333333322 278999999999986431 1111111 223346789
Q ss_pred ecCCCCCChHHHHHHHHHHHHh
Q 028305 161 TSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 161 ~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
+||++|.|+.++++.+.+.+..
T Consensus 164 iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 164 ISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp CCTTTCTTHHHHHHHHHTTGGG
T ss_pred eecccccchHHHHHHHHhhccc
Confidence 9999999999999999887654
No 172
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.83 E-value=7e-20 Score=151.81 Aligned_cols=126 Identities=21% Similarity=0.270 Sum_probs=91.2
Q ss_pred CCccccccccceEEEEEEcCCCCcHHHHHHHHhhCc--CC------C----------cccceeeeEEEEEEEEeCCeEEE
Q 028305 1 MDISVNMKRRNLLKVIVLGDSGVGKTSLMNQYVYNK--FS------Q----------QYKATIGADFVTKELQMDDKLVT 62 (210)
Q Consensus 1 ~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~------~----------~~~~~~~~~~~~~~~~~~~~~~~ 62 (210)
|.+.+........+|+|+|++|+|||||+++|+... +. . ....+.++......+... ...
T Consensus 1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~ 78 (691)
T 1dar_A 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHR 78 (691)
T ss_dssp CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEE
T ss_pred CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeE
Confidence 677777777889999999999999999999998421 10 0 001112222222233333 367
Q ss_pred EEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 63 LQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
+.+|||||+.++......+++.+|++|+|+|.++.........|.. +... ++|+++|+||+|+...
T Consensus 79 i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~-------~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY-------KVPRIAFANKMDKTGA 144 (691)
T ss_dssp EEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT-------TCCEEEEEECTTSTTC
T ss_pred EEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc-------CCCEEEEEECCCcccC
Confidence 9999999999998889999999999999999999877777655543 3322 7899999999998754
No 173
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=5.8e-21 Score=144.83 Aligned_cols=123 Identities=13% Similarity=0.187 Sum_probs=95.1
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEe
Q 028305 60 LVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVN----------VQKTFESLQNWREEFLKQADPGEHEACPFVLLGN 129 (210)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~ 129 (210)
.+.+.+||++|++.++..+..++++++++|+|+|++ +..++.....|+..+..... ..++|+++++|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~---~~~~piiLv~N 236 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF---LKGAVKLIFLN 236 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG---GTTSEEEEEEE
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc---cCCCeEEEEEE
Confidence 478999999999999999999999999999999998 67888888888887765422 12789999999
Q ss_pred cCCCCCCC-------------CcccchHHHHHHHH-Hc-------------------------CCCcEEEecCCCCCChH
Q 028305 130 KIDTDGGS-------------SRVVPQKKALEWCA-YR-------------------------GNIPYFETSAKEDCNID 170 (210)
Q Consensus 130 K~D~~~~~-------------~~~~~~~~~~~~~~-~~-------------------------~~~~~~~~Sa~~~~~v~ 170 (210)
|+|+.+.. ......+++..++. .. ..+.+++|||+++.||+
T Consensus 237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~ 316 (340)
T 4fid_A 237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK 316 (340)
T ss_dssp CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence 99984310 00012444433332 22 23678999999999999
Q ss_pred HHHHHHHHHHHhcccc
Q 028305 171 EAFLCVAEIALKNEHK 186 (210)
Q Consensus 171 ~~~~~l~~~~~~~~~~ 186 (210)
.+|..+.+.+++ +.+
T Consensus 317 ~vF~~v~~~Il~-~l~ 331 (340)
T 4fid_A 317 RVFMLAVDVIMK-NMA 331 (340)
T ss_dssp HHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHH-HHH
Confidence 999999999998 543
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.83 E-value=1.4e-21 Score=147.60 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=100.3
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCc------ccceee----------------------eE------------
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQ------YKATIG----------------------AD------------ 48 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------~~~~~~----------------------~~------------ 48 (210)
....++|+|+|.+|+|||||+|+|++..+.+. ..++.. .+
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 34578999999999999999999998876421 122210 00
Q ss_pred -----------EEEEEEEeCCeEEEEEEEeCCCcc-------------cccccccccccCCcEEE-EEEECCChhhHHHH
Q 028305 49 -----------FVTKELQMDDKLVTLQIWDTAGQE-------------RFQSLGSAFYRGADCCV-LVYDVNVQKTFESL 103 (210)
Q Consensus 49 -----------~~~~~~~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~vi-~v~d~~~~~s~~~~ 103 (210)
.....+... ....+.+|||||.. .+......+++.++.++ +|+|.++..+....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred hcccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 000000000 02569999999964 23445567788888766 79999875443332
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHc--CCCcEEEecCCCCCChHHHHHHHHHHH
Q 028305 104 QNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYR--GNIPYFETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 104 ~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
..+...+.. .+.|+++|+||+|+.+... ...+......... +..+++++||++|.|++++++++.+..
T Consensus 182 ~~~~~~~~~-------~~~~~i~V~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 182 LKIAKEVDP-------QGQRTIGVITKLDLMDEGT--DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHHHCT-------TCSSEEEEEECGGGSCTTC--CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHHhCC-------CCCeEEEEEEccccCCCCc--hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 233333321 2679999999999975421 1112211100011 223678999999999999999998743
No 175
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.81 E-value=2.4e-19 Score=139.93 Aligned_cols=164 Identities=15% Similarity=0.089 Sum_probs=111.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccc----cccccc---cccCC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERF----QSLGSA---FYRGA 85 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~---~~~~~ 85 (210)
..|+|+|++|||||||+++|.+........+.++.......+..++ ...+.+||+||..+. ..+... .+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3589999999999999999987643211112222223333344443 245889999996431 112222 24568
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCC
Q 028305 86 DCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKE 165 (210)
Q Consensus 86 d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (210)
+.+++++|++ ...+..+..+..++..+.... ...|.++|+||+|+... ...+++...+...+ ..++.+||++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL--~~~P~ILVlNKlDl~~~----~~~~~l~~~l~~~g-~~vi~iSA~~ 308 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPAL--LRRPSLVALNKVDLLEE----EAVKALADALAREG-LAVLPVSALT 308 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHH--HHSCEEEEEECCTTSCH----HHHHHHHHHHHTTT-SCEEECCTTT
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHh--hcCCEEEEEECCChhhH----HHHHHHHHHHHhcC-CeEEEEECCC
Confidence 9999999998 566777777777766542100 14699999999998752 23344444444444 7899999999
Q ss_pred CCChHHHHHHHHHHHHhccc
Q 028305 166 DCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 166 ~~~v~~~~~~l~~~~~~~~~ 185 (210)
+.|+++++++|.+.+.+...
T Consensus 309 g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 309 GAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp CTTHHHHHHHHHHHHHTSCC
T ss_pred ccCHHHHHHHHHHHHHhccc
Confidence 99999999999999987654
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.81 E-value=6.6e-19 Score=130.49 Aligned_cols=122 Identities=20% Similarity=0.163 Sum_probs=85.0
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccccccccccc-----
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYR----- 83 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~----- 83 (210)
...++|+++|.+|+|||||+++|++.... ....++.+..........++ ..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 46899999999999999999999987753 22223333444445555655 57999999999887666554443
Q ss_pred ----CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCC
Q 028305 84 ----GADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDG 135 (210)
Q Consensus 84 ----~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~ 135 (210)
.+|++++|++++..........|+..+....... ...|+++|+||+|+.+
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE--IWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECTTCCC
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh--hhcCEEEEEeCcccCC
Confidence 7899999999987542222245666666543321 0238999999999854
No 177
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.80 E-value=2.4e-20 Score=140.61 Aligned_cols=167 Identities=19% Similarity=0.256 Sum_probs=88.1
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhC-cCCCccc--------ceeeeEEEEEEEEeCCeEEEEEEEeCCCc-------c
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYN-KFSQQYK--------ATIGADFVTKELQMDDKLVTLQIWDTAGQ-------E 72 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~ 72 (210)
+...++|+|+|++|+|||||+++|.+. .++.... ++.............+....+.+||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 456799999999999999999998865 3332221 11111111122233444578999999997 4
Q ss_pred ccccccc-------ccccC-------------CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCC
Q 028305 73 RFQSLGS-------AFYRG-------------ADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132 (210)
Q Consensus 73 ~~~~~~~-------~~~~~-------------~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D 132 (210)
.+..... .+++. +++++++.+.+. .+++.... ..+... .. +.|+++|+||+|
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l-~~----~~~iilV~~K~D 166 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI-HN----KVNIVPVIAKAD 166 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH-TT----TSCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH-Hh----cCCEEEEEEeCC
Confidence 4444333 33222 344555544332 12333221 222222 21 579999999999
Q ss_pred CCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
+..........+++..+++..+ +.++++||++| |++++|..+.+.+.+..+
T Consensus 167 l~~~~e~~~~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 167 TLTLKERERLKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTT-CCCCCCC----------CHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 9753222344567788888887 89999999999 999999999999876554
No 178
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=5.3e-19 Score=146.67 Aligned_cols=168 Identities=14% Similarity=0.160 Sum_probs=107.5
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCC-cccceee--------------eEE-------------------------
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQ-QYKATIG--------------ADF------------------------- 49 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~--------------~~~------------------------- 49 (210)
...++|+|+|.+|+|||||+|+|++..... ...+++. ..+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 468999999999999999999999876542 2222221 000
Q ss_pred --------------EEEEEEeCCeE--EEEEEEeCCCccc---ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHH
Q 028305 50 --------------VTKELQMDDKL--VTLQIWDTAGQER---FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEF 110 (210)
Q Consensus 50 --------------~~~~~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l 110 (210)
....+...... ..+.+|||||... .......+++.+|++++|+|.+++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 00000000000 2489999999654 3345567788999999999999887777665554333
Q ss_pred HHhcCCCCCCCCCEEEEEecCCCCCCC---Ccc--c---chHHHHHH----HHHc--------CCCcEEEecCC------
Q 028305 111 LKQADPGEHEACPFVLLGNKIDTDGGS---SRV--V---PQKKALEW----CAYR--------GNIPYFETSAK------ 164 (210)
Q Consensus 111 ~~~~~~~~~~~~p~ilv~~K~D~~~~~---~~~--~---~~~~~~~~----~~~~--------~~~~~~~~Sa~------ 164 (210)
.. .+.|+++|+||+|+.... ... . ..+.+... .... ....++++||+
T Consensus 227 ~~-------~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~ 299 (695)
T 2j69_A 227 KG-------RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR 299 (695)
T ss_dssp TT-------SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred Hh-------hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence 21 156899999999986431 000 0 00012111 1111 12469999999
Q ss_pred --------CCCChHHHHHHHHHHHHhcc
Q 028305 165 --------EDCNIDEAFLCVAEIALKNE 184 (210)
Q Consensus 165 --------~~~~v~~~~~~l~~~~~~~~ 184 (210)
++.|+.+++..+.+.+....
T Consensus 300 ~~~~~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 300 LKNPQADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp HHCTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred ccCchhhhhccCHHHHHHHHHHHHHHhH
Confidence 99999999999998776543
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.79 E-value=2.9e-18 Score=142.22 Aligned_cols=122 Identities=18% Similarity=0.253 Sum_probs=86.3
Q ss_pred ccccccceEEEEEEcCCCCcHHHHHHHHhh--CcCCC-----------cc-----cceeeeEEEEEEEEeCCeEEEEEEE
Q 028305 5 VNMKRRNLLKVIVLGDSGVGKTSLMNQYVY--NKFSQ-----------QY-----KATIGADFVTKELQMDDKLVTLQIW 66 (210)
Q Consensus 5 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~--~~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~i~ 66 (210)
...+.....+|+|+|++|+|||||+++|+. +.+.. .+ ..++++......+...+ ..+.+|
T Consensus 3 ~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~li 80 (693)
T 2xex_A 3 REFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNII 80 (693)
T ss_dssp CSSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEE
T ss_pred CcCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEE
Confidence 344556789999999999999999999984 22210 00 11112222222333443 679999
Q ss_pred eCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 67 DTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 67 D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
||||+.++......+++.+|++|+|+|.++.........|. .+... ++|+++|+||+|+...
T Consensus 81 DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~-------~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY-------GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT-------TCCEEEEEECTTSTTC
T ss_pred ECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc-------CCCEEEEEECCCcccc
Confidence 99999999888889999999999999999877776655553 33332 7799999999999754
No 180
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.78 E-value=9.3e-18 Score=139.35 Aligned_cols=121 Identities=19% Similarity=0.180 Sum_probs=84.5
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhCc--CCC-----------cc-----cceeeeEEEEEEEEe-----CCeEEEEE
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYNK--FSQ-----------QY-----KATIGADFVTKELQM-----DDKLVTLQ 64 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~-----------~~-----~~~~~~~~~~~~~~~-----~~~~~~~~ 64 (210)
......+|+|+|+.|+|||||+++|+... +.. .. ..+.++......+.. ++..+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34568999999999999999999997431 110 00 111222222222222 23347899
Q ss_pred EEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 65 IWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
+|||||+.+|...+..+++.+|++|+|+|+++.........|. ..... ++|+++|+||+|+...
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~~-------~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANKY-------KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHHc-------CCCEEEEEeCCCcccc
Confidence 9999999999888899999999999999999876555544443 22221 7899999999998654
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.78 E-value=1.8e-18 Score=142.91 Aligned_cols=116 Identities=15% Similarity=0.145 Sum_probs=81.8
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcc------------------cceeeeEEEEEEEEeCCeEEEEEEEeCCC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQY------------------KATIGADFVTKELQMDDKLVTLQIWDTAG 70 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (210)
.....+|+++|+.|+|||||+++|++....... ....+.......+... .+.+++|||||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCC
Confidence 346789999999999999999999843321000 0112222222223333 47799999999
Q ss_pred cccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCC
Q 028305 71 QERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTD 134 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~ 134 (210)
+.++......+++.+|++++|+|+.+....... .++..+... ++|+++|+||+|+.
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~-------~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL-------GLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT-------TCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc-------cCCEEEEecCCchh
Confidence 999988889999999999999998876443332 344444332 67999999999987
No 182
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.77 E-value=2.7e-19 Score=143.96 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=94.3
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCc----------------------ccceeeeEEEEEEEEeCCeEEEEEEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQ----------------------YKATIGADFVTKELQMDDKLVTLQIW 66 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~ 66 (210)
....++|+++|++|+|||||+++|+....... ...+.++......+... ...+.+|
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~li 87 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH--DCLVNLL 87 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET--TEEEEEE
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC--CeEEEEE
Confidence 35689999999999999999999986321100 00011111111222333 3679999
Q ss_pred eCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHH
Q 028305 67 DTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKA 146 (210)
Q Consensus 67 D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~ 146 (210)
||||+.+|......+++.+|++|+|+|+++...... ..++..+.. .++|+++|+||+|+.... ..+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~-------~~ipiivviNK~Dl~~~~----~~~~~ 155 (529)
T 2h5e_A 88 DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL-------RDTPILTFMNKLDRDIRD----PMELL 155 (529)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT-------TTCCEEEEEECTTSCCSC----HHHHH
T ss_pred ECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH-------cCCCEEEEEcCcCCcccc----HHHHH
Confidence 999999998888889999999999999987643222 222222211 278999999999997642 12333
Q ss_pred HHHHHHcCC----CcEEEecCCCCCChHHHHH
Q 028305 147 LEWCAYRGN----IPYFETSAKEDCNIDEAFL 174 (210)
Q Consensus 147 ~~~~~~~~~----~~~~~~Sa~~~~~v~~~~~ 174 (210)
..+....+. ..+...|+.++.|+.+++.
T Consensus 156 ~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~ 187 (529)
T 2h5e_A 156 DEVENELKIGCAPITWPIGCGKLFKGVYHLYK 187 (529)
T ss_dssp HHHHHHHCCEEEESEEEESCGGGCCEEEETTT
T ss_pred HHHHHHhCCCccceecceecccCcceeeehhh
Confidence 344444441 1123356666666655543
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.77 E-value=9.3e-18 Score=124.82 Aligned_cols=122 Identities=18% Similarity=0.166 Sum_probs=80.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCC-cccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccc-------c
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQ-QYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSA-------F 81 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-------~ 81 (210)
...++|+++|.+|+|||||+|+|++..+.. ...++.+..........++ ..+.+|||||+.++...... +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 458999999999999999999999877531 2222222233333334444 67999999998766543321 1
Q ss_pred --ccCCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 82 --YRGADCCVLVYDVNVQKTFES-LQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 82 --~~~~d~vi~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
...+|++++|+|++... +.. ...|+..+....... ...|+++|+||+|+.+.
T Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~--~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCCG
T ss_pred hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcc--cccCEEEEEECcccCCc
Confidence 24689999999997642 332 235666665543210 02699999999998653
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.76 E-value=1.6e-18 Score=134.95 Aligned_cols=85 Identities=18% Similarity=0.179 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEE---------------------eCC-eEEEEEEEeCCC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQ---------------------MDD-KLVTLQIWDTAG 70 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~g 70 (210)
++|+++|.||+|||||+|+|++........++++.+....... +++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999997763322333333322222211 122 247799999999
Q ss_pred ccc----ccccc---cccccCCcEEEEEEECCCh
Q 028305 71 QER----FQSLG---SAFYRGADCCVLVYDVNVQ 97 (210)
Q Consensus 71 ~~~----~~~~~---~~~~~~~d~vi~v~d~~~~ 97 (210)
... ...+. ..+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 12222 2457899999999999875
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.76 E-value=4.2e-19 Score=134.93 Aligned_cols=165 Identities=13% Similarity=0.148 Sum_probs=97.1
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcc------cceeeeEEEEE------------------------------
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQY------KATIGADFVTK------------------------------ 52 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~------------------------------ 52 (210)
....++|+|+|.+|+|||||+|+|++..+.+.. .++. ......
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLI-LQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIR 99 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEE-EEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEE-EEEEeCCCcccccchhhhhhhhcccccccCCHHHHH
Confidence 345789999999999999999999988763211 1110 001000
Q ss_pred ----------------------EEE-eCCeEEEEEEEeCCCccc-------------ccccccccccCCcEEEEEEECCC
Q 028305 53 ----------------------ELQ-MDDKLVTLQIWDTAGQER-------------FQSLGSAFYRGADCCVLVYDVNV 96 (210)
Q Consensus 53 ----------------------~~~-~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~vi~v~d~~~ 96 (210)
.+. .......+.+|||||... +......+++.+|++++|+|..+
T Consensus 100 ~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 100 EEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp HHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred HHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 000 011124699999999653 34455667889999999999744
Q ss_pred hhhH-HHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCC---C---CCCh
Q 028305 97 QKTF-ESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK---E---DCNI 169 (210)
Q Consensus 97 ~~s~-~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~v 169 (210)
.... .....+...+. . .+.|+++|+||+|+.+... ...+.+.......+ ..++++++. + +.|+
T Consensus 180 ~~~~~~~~~~i~~~~~---~----~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv 249 (315)
T 1jwy_B 180 TDLANSDALQLAKEVD---P----EGKRTIGVITKLDLMDKGT--DAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSI 249 (315)
T ss_dssp SCSTTCSHHHHHHHHC---S----SCSSEEEEEECTTSSCSSC--CCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCH
T ss_pred cchhhhHHHHHHHHhC---C----CCCcEEEEEcCcccCCcch--HHHHHHhCCCccCC-CCeEEEecCChhhhccCCCH
Confidence 3211 11112222221 1 2679999999999975421 11222211000111 456666554 4 7899
Q ss_pred HHHHHHHHHHHHhcc
Q 028305 170 DEAFLCVAEIALKNE 184 (210)
Q Consensus 170 ~~~~~~l~~~~~~~~ 184 (210)
.++++.+.+.+....
T Consensus 250 ~~l~~~~~~~~~~~~ 264 (315)
T 1jwy_B 250 RESLKSEILYFKNHP 264 (315)
T ss_dssp HHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999888876543
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=135.86 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=81.1
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCC-Ccc-------cceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc----
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQY-------KATIGADFVTKELQMDDKLVTLQIWDTAGQERFQS---- 76 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---- 76 (210)
....++|+|+|++|+|||||++.|++..+. ... .++.............+....+.+||++|......
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 456789999999999999999999987653 111 11222222222222234445799999999764311
Q ss_pred ---------------------cccccccCCcEEEEEEECCCh-hhHHHHH-HHHHHHHHhcCCCCCCCCCEEEEEecCCC
Q 028305 77 ---------------------LGSAFYRGADCCVLVYDVNVQ-KTFESLQ-NWREEFLKQADPGEHEACPFVLLGNKIDT 133 (210)
Q Consensus 77 ---------------------~~~~~~~~~d~vi~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~~~~~p~ilv~~K~D~ 133 (210)
+...++..+++.+++|..... .++.... .|+..+. . ++|+|+|+||+|+
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~----~v~iIlVinK~Dl 179 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----E----KVNIIPLIAKADT 179 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----T----TSEEEEEEESTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----c----cCcEEEEEEcccC
Confidence 112234455544444444332 2333333 4555542 1 6799999999998
Q ss_pred CCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHH
Q 028305 134 DGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
..........+++...+...+ +.++++|+.++.++.++|..+.+.+
T Consensus 180 l~~~ev~~~k~~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 180 LTPEECQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT-CCCCCCC-----------------C
T ss_pred ccHHHHHHHHHHHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 754212222367777777777 8999999999999999888777653
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.75 E-value=6e-19 Score=136.40 Aligned_cols=157 Identities=13% Similarity=0.146 Sum_probs=98.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEE----------------------------------------
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFV---------------------------------------- 50 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 50 (210)
...+|+|+|++|||||||+++|++..+.+......+....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 4459999999999999999999987763222111110000
Q ss_pred --------------EEEEEeCCeEEEEEEEeCCCcccc-------------cccccccccCCcEEEEEEECCChhhHHHH
Q 028305 51 --------------TKELQMDDKLVTLQIWDTAGQERF-------------QSLGSAFYRGADCCVLVYDVNVQKTFESL 103 (210)
Q Consensus 51 --------------~~~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~vi~v~d~~~~~s~~~~ 103 (210)
...+. ......+.+|||||...+ ......+++.+|++|++++..+.+...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~-~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIY-SPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEE-ETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred HhcCCCCCcccceEEEEEe-CCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence 00000 011235899999997765 455667889999999999876543222
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHH
Q 028305 104 QNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVA 177 (210)
Q Consensus 104 ~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 177 (210)
..|+..+..... .+.|+++|+||+|+.... ....+.........+ ..|+++++..+.++++.+..+.
T Consensus 190 ~~~~~l~~~~~~----~~~~~i~V~nK~Dl~~~~--~~~~~~~~~~~~~~~-~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 190 SDAIKISREVDP----SGDRTFGVLTKIDLMDKG--TDAVEILEGRSFKLK-YPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp CHHHHHHHHSCT----TCTTEEEEEECGGGCCTT--CCSHHHHTTSSSCCS-SCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHHHHhcc----cCCCEEEEEeCCccCCCc--ccHHHHHcCcccccc-CCeEEEEECChHHhccCCCHHH
Confidence 223333332222 267999999999997542 222232332233334 7899999999988887665543
No 188
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.75 E-value=1.2e-18 Score=131.32 Aligned_cols=135 Identities=19% Similarity=0.127 Sum_probs=106.7
Q ss_pred HHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChh-hHHHHH
Q 028305 27 SLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQK-TFESLQ 104 (210)
Q Consensus 27 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~ 104 (210)
+|+++++.+.|. ..+.++++..+. .....++ .+.+||+ ++++..++..+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 588888888888 778888885543 3322222 6899999 8899999999999999999999999997 788888
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCC-CcEEEecCCCCCChHHHHHHHHH
Q 028305 105 NWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGN-IPYFETSAKEDCNIDEAFLCVAE 178 (210)
Q Consensus 105 ~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 178 (210)
.|+..+... ++|+++|+||+|+.+. +.+ ++...++..+.. ..++++||++|.|++++|..+..
T Consensus 106 ~~l~~~~~~-------~~piilv~NK~DL~~~--~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEKN-------ELETVMVINKMDLYDE--DDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHT-------TCEEEEEECCGGGCCH--HHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHC-------CCCEEEEEeHHHcCCc--hhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 998876541 7899999999999753 222 445566655543 68999999999999999988754
No 189
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.74 E-value=2.4e-17 Score=133.25 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=84.4
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcC------------------C----CcccceeeeEEEEEEEEeCCeEEEEEEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKF------------------S----QQYKATIGADFVTKELQMDDKLVTLQIW 66 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 66 (210)
..+..+|+|+|+.++|||||..+|+...- . .+...++++.-....+...+ ..++++
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlI 105 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLL 105 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEE
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEE
Confidence 34689999999999999999999862111 0 11111222222223334444 679999
Q ss_pred eCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC
Q 028305 67 DTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGS 137 (210)
Q Consensus 67 D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~ 137 (210)
||||+.+|.......++-+|++|+|+|....-......-|... .++ ++|.++++||+|.....
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a-~~~-------~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVC-RMR-------ATPVMTFVNKMDREALH 168 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHH-HHT-------TCCEEEEEECTTSCCCC
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHH-HHh-------CCceEEEEecccchhcc
Confidence 9999999999999999999999999999987655555555333 332 88999999999987654
No 190
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.74 E-value=4.9e-18 Score=122.67 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=94.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEE--------------EEEEEEe----------------CCe
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADF--------------VTKELQM----------------DDK 59 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~ 59 (210)
....+|+++|.+|+|||||+++|...............++ ....... ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 4568999999999999999999986532211111111000 0011111 011
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCc
Q 028305 60 LVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSR 139 (210)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~ 139 (210)
...+.+|||+|+..... .+....+.+++|+|+.+.... ...+.... +.|+++|+||+|+.+. .
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~~----------~~~~iiv~NK~Dl~~~--~ 170 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEIF----------RVADLIVINKVALAEA--V 170 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHHH----------HTCSEEEEECGGGHHH--H
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhhh----------hcCCEEEEecccCCcc--h
Confidence 24688999988511111 111246889999998765321 11111111 4589999999998532 1
Q ss_pred ccchHHHHHHHHHcC-CCcEEEecCCCCCChHHHHHHHHHHHHhccc
Q 028305 140 VVPQKKALEWCAYRG-NIPYFETSAKEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 140 ~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
....++....++..+ ..+++++||++|.|+++++++|.+.+.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 217 (221)
T 2wsm_A 171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHSD 217 (221)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC----
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHHh
Confidence 123445555554433 4689999999999999999999998866543
No 191
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.73 E-value=1.1e-17 Score=128.58 Aligned_cols=158 Identities=14% Similarity=0.118 Sum_probs=106.2
Q ss_pred CCcHHHH--HHHHhhCcCCCc-------ccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 028305 22 GVGKTSL--MNQYVYNKFSQQ-------YKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVY 92 (210)
Q Consensus 22 ~~GKSsl--i~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~ 92 (210)
.+.+--| +.++....+.+. ..+|+++.. ..+.+++ +.+.+|||+|++.++..+..++++++++|+|+
T Consensus 157 ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~ 232 (362)
T 1zcb_A 157 ESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLV 232 (362)
T ss_dssp TTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEE
T ss_pred ccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEE
Confidence 4444433 445554444432 234445443 3444544 78999999999999999999999999999999
Q ss_pred ECCC----------hhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC--------------CcccchHHHHH
Q 028305 93 DVNV----------QKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGS--------------SRVVPQKKALE 148 (210)
Q Consensus 93 d~~~----------~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~--------------~~~~~~~~~~~ 148 (210)
|+++ ..++.....|+..+..... ..++|+|+|+||+|+.+.. ......+++..
T Consensus 233 dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~---~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~ 309 (362)
T 1zcb_A 233 SSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV---FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQK 309 (362)
T ss_dssp ETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG---GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHH
T ss_pred ECccccccccccccccHHHHHHHHHHHHhcchh---hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHH
Confidence 9999 7789888888888765321 1278999999999985210 01144566666
Q ss_pred HHH-------H---cCCCcEEEecCCCCCChHHHHHHHHHHHHhcccc
Q 028305 149 WCA-------Y---RGNIPYFETSAKEDCNIDEAFLCVAEIALKNEHK 186 (210)
Q Consensus 149 ~~~-------~---~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 186 (210)
++. . ...+.+++|||+++.||+++|+++.+.+++.+.+
T Consensus 310 ~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l~ 357 (362)
T 1zcb_A 310 FLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK 357 (362)
T ss_dssp HHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHHH
Confidence 551 1 1237789999999999999999999999877654
No 192
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.72 E-value=2.2e-17 Score=127.93 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=99.7
Q ss_pred EEEEeCCeEEEEEEEeCCCcccccccccccccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCC
Q 028305 52 KELQMDDKLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNV----------QKTFESLQNWREEFLKQADPGEHEA 121 (210)
Q Consensus 52 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~l~~~~~~~~~~~ 121 (210)
..+.+++ +.+.+|||+|++.++..+..++++++++|+|||+++ ..++.....|+..+..... ..+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~---~~~ 284 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW---LRT 284 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT---CSS
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc---CCC
Confidence 3445554 889999999999999999999999999999999999 8899999999888875421 237
Q ss_pred CCEEEEEecCCCCCCCCcc---c---------------------------chHHHHHHH-----HHc-------CCCcEE
Q 028305 122 CPFVLLGNKIDTDGGSSRV---V---------------------------PQKKALEWC-----AYR-------GNIPYF 159 (210)
Q Consensus 122 ~p~ilv~~K~D~~~~~~~~---~---------------------------~~~~~~~~~-----~~~-------~~~~~~ 159 (210)
+|++||+||+|+... +. . ..+++..++ +.. ..+.++
T Consensus 285 ~piiLvgNK~DL~~~--ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~ 362 (402)
T 1azs_C 285 ISVILFLNKQDLLAE--KVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH 362 (402)
T ss_dssp CCEEEEEECHHHHHH--HHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred CeEEEEEEChhhhhh--hhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence 899999999998432 11 0 134454443 221 235678
Q ss_pred EecCCCCCChHHHHHHHHHHHHhcccc
Q 028305 160 ETSAKEDCNIDEAFLCVAEIALKNEHK 186 (210)
Q Consensus 160 ~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 186 (210)
+|||+++.||+++|..+.+.+++.+.+
T Consensus 363 ~TSA~d~~nV~~vF~~v~~~I~~~~l~ 389 (402)
T 1azs_C 363 FTCAVDTENIRRVFNDCRDIIQRMHLR 389 (402)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877654
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.71 E-value=3.5e-19 Score=137.28 Aligned_cols=159 Identities=16% Similarity=0.183 Sum_probs=91.5
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcc------cceeeeE-----------------------------------
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQY------KATIGAD----------------------------------- 48 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~----------------------------------- 48 (210)
...++|+|+|.+|+|||||+++|++..+.+.. .|+...-
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999988764211 1221000
Q ss_pred ----------EEEEEEEeCCeEEEEEEEeCCCcc-------------cccccccccccCCcEEEE-EEECCChhhHHHHH
Q 028305 49 ----------FVTKELQMDDKLVTLQIWDTAGQE-------------RFQSLGSAFYRGADCCVL-VYDVNVQKTFESLQ 104 (210)
Q Consensus 49 ----------~~~~~~~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~vi~-v~d~~~~~s~~~~~ 104 (210)
.....+.. .....+.+|||||.. .+..+...++..++.+|+ +.+.+....-....
T Consensus 109 ~g~~~gi~~~~~~~~i~~-~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~ 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYS-PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEEE-TTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred cccCCCcccCceEEEEec-CCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence 00000000 012569999999953 234455666766655554 55554322111111
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHH--HHHHcCCCcEEEecCCCCCChHHHHHHHHH
Q 028305 105 NWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALE--WCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178 (210)
Q Consensus 105 ~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 178 (210)
.+...+ .. .+.|+++|+||+|+.+.... ..+.... +....+...++++||+++.|++++++++.+
T Consensus 188 ~i~~~~---~~----~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 188 KVAKEV---DP----QGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHH---CT----TCTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHh---Cc----CCCceEEEeccccccCcchh--HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 222222 11 26799999999999754211 1111110 000012235788999999999999999977
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.71 E-value=4.4e-18 Score=131.16 Aligned_cols=107 Identities=14% Similarity=0.076 Sum_probs=70.6
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcc
Q 028305 61 VTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRV 140 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~ 140 (210)
+.+.+|||||... .....+..+|++++|+|....+....+.. .....|+++|+||+|+.+.....
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~------------~~~~~p~ivVlNK~Dl~~~~~~~ 236 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK------------GVLELADIVVVNKADGEHHKEAR 236 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT------------TSGGGCSEEEEECCCGGGHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH------------hHhhcCCEEEEECCCCcChhHHH
Confidence 5689999999432 23344588999999999876543322211 01145999999999986421111
Q ss_pred cchHHHHHHHHHcC------CCcEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 141 VPQKKALEWCAYRG------NIPYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 141 ~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
....+........+ ..+++++||++|.|+++++++|.+.+..
T Consensus 237 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 237 LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 12222322222221 3689999999999999999999988765
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.70 E-value=5.9e-17 Score=136.94 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=85.9
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCC------------C----cccc--eeeeEEEEEEEE------------eCC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFS------------Q----QYKA--TIGADFVTKELQ------------MDD 58 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------~----~~~~--~~~~~~~~~~~~------------~~~ 58 (210)
.....+|+|+|++|+|||||+++|+...-. + +... ++........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 456789999999999999999999854211 0 0011 111111122222 234
Q ss_pred eEEEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCC
Q 028305 59 KLVTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTD 134 (210)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~ 134 (210)
..+.+++|||||+.+|...+..+++.+|++|+|+|+++..++.....|..... . ++|+++|+||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~-~-------~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG-E-------RIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH-T-------TCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-c-------CCCeEEEEECCCcc
Confidence 46889999999999999999999999999999999999888777655544332 1 67999999999985
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=7.8e-16 Score=117.79 Aligned_cols=149 Identities=18% Similarity=0.115 Sum_probs=91.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCe---------------EEEEEEEeCCCccccc--
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDK---------------LVTLQIWDTAGQERFQ-- 75 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~-- 75 (210)
++|+++|.||+|||||+|+|.+........++.+.+.....+.+.+. ...+.+|||||..+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987643333333333332233344332 1469999999976542
Q ss_pred --ccc---cccccCCcEEEEEEECCCh----------hhHHHHHHHHHHHH-----------------------------
Q 028305 76 --SLG---SAFYRGADCCVLVYDVNVQ----------KTFESLQNWREEFL----------------------------- 111 (210)
Q Consensus 76 --~~~---~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~l~----------------------------- 111 (210)
.+. ...++.+|++++|+|+++. +.+..+..+..++.
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 222 2347899999999999862 22333222111110
Q ss_pred -------HhcC--------------------CCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCC
Q 028305 112 -------KQAD--------------------PGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAK 164 (210)
Q Consensus 112 -------~~~~--------------------~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (210)
..+. .......|+++++|+.|..-. .....+.++.++...+ .+++++||+
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~--~n~~~~~v~~~~~~~~-~~~i~~sA~ 239 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFE--NNPYLDRVREIAAKEG-AVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSS--SCHHHHHHHHHHHHTT-CEEEEECHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEeccccccc--ccHHHHHHHHHHHHcC-CCEEEechH
Confidence 0000 011225899999999996431 2345667777777766 789999965
No 197
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.69 E-value=1.2e-16 Score=115.71 Aligned_cols=157 Identities=17% Similarity=0.134 Sum_probs=93.6
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEE------------EEEEEeC-CeE----------------
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFV------------TKELQMD-DKL---------------- 60 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~---------------- 60 (210)
...++|+|+|.+|||||||+++|+...+...+.++...++. .....++ +..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 45799999999999999999999977655444444443322 1111111 110
Q ss_pred ---EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC
Q 028305 61 ---VTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGS 137 (210)
Q Consensus 61 ---~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~ 137 (210)
..+.++|++|.-... ..+-...+..+.+.|......... .....+ +.|+++|+||+|+.+.
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~----------~~~~iiv~NK~Dl~~~- 179 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGIM----------KTADLIVINKIDLADA- 179 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH----------TTCSEEEEECGGGHHH-
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhHh----------hcCCEEEEeccccCch-
Confidence 135555655521110 011123456667777532211100 001111 4588999999998542
Q ss_pred CcccchHHHHHHHHHcC-CCcEEEecCCCCCChHHHHHHHHHHHHhc
Q 028305 138 SRVVPQKKALEWCAYRG-NIPYFETSAKEDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 138 ~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 183 (210)
.....++....++..+ ..+++++||++|.|++++|+++.+.+..+
T Consensus 180 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 180 -VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp -HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred -hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 2234555666665543 47899999999999999999999887654
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.66 E-value=1e-17 Score=128.71 Aligned_cols=106 Identities=13% Similarity=0.009 Sum_probs=62.0
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcc
Q 028305 61 VTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRV 140 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~ 140 (210)
..+.++||+|.... .......+|++++|+|.+++.....+.. .+ . ..|.++|+||+|+.+.....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---l------~~~~ivVlNK~Dl~~~~~~~ 231 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI---I------EMADLVAVTKSDGDLIVPAR 231 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------C------CSCSEEEECCCSGGGHHHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH---H------hcCCEEEEeeecCCCchhHH
Confidence 46889999995321 2334678999999999986532221111 11 1 45889999999985310000
Q ss_pred cchHHHHHHHHH------cCCCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 141 VPQKKALEWCAY------RGNIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 141 ~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
............ ....+++.+||++|.|+++++++|.+.+.
T Consensus 232 ~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 232 RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 011111111111 11257899999999999999999988764
No 199
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.64 E-value=1.9e-16 Score=121.38 Aligned_cols=107 Identities=15% Similarity=0.164 Sum_probs=66.6
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcc
Q 028305 61 VTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRV 140 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~ 140 (210)
+.+.+|||||...... .....+|++++|+|.+.......+.. ... +.|.++|+||+|+.+.....
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~---------~~p~ivv~NK~Dl~~~~~~~ 213 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GLM---------EVADLIVINKDDGDNHTNVA 213 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HHH---------HHCSEEEECCCCTTCHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hhh---------cccCEEEEECCCCCChHHHH
Confidence 5699999999654332 24578999999999876533211111 000 45889999999986421111
Q ss_pred cchHHHHHHHHHcC------CCcEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 141 VPQKKALEWCAYRG------NIPYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 141 ~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
...++........+ ..+++++||++|.|+++++++|.+.+..
T Consensus 214 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~ 261 (341)
T 2p67_A 214 IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA 261 (341)
T ss_dssp HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 11112332222222 3578999999999999999999998753
No 200
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.62 E-value=2.6e-16 Score=127.30 Aligned_cols=120 Identities=17% Similarity=0.144 Sum_probs=78.9
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCC---CcccceeeeEEEEEEE-----EeC-----------------C-----
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFS---QQYKATIGADFVTKEL-----QMD-----------------D----- 58 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~-----~~~-----------------~----- 58 (210)
....++|+|+|.+|+|||||+|+|++..+. ....+++......... ..+ +
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 346789999999999999999999988763 2222222111100000 000 0
Q ss_pred e-E---------EEEEEEeCCCccc-----------ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCC
Q 028305 59 K-L---------VTLQIWDTAGQER-----------FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPG 117 (210)
Q Consensus 59 ~-~---------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~ 117 (210)
. . ..+.+|||||... +......++..+|++++|+|+++.........++..+..
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----- 216 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----- 216 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT-----
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh-----
Confidence 0 0 2589999999764 334455667889999999999875444444555554432
Q ss_pred CCCCCCEEEEEecCCCCC
Q 028305 118 EHEACPFVLLGNKIDTDG 135 (210)
Q Consensus 118 ~~~~~p~ilv~~K~D~~~ 135 (210)
.+.|+++|+||+|+..
T Consensus 217 --~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 217 --HEDKIRVVLNKADMVE 232 (550)
T ss_dssp --CGGGEEEEEECGGGSC
T ss_pred --cCCCEEEEEECCCccC
Confidence 1579999999999875
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.62 E-value=1.1e-14 Score=121.27 Aligned_cols=123 Identities=17% Similarity=0.167 Sum_probs=83.7
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCc--------------CC----CcccceeeeEEEEEEEEeC-----CeEEE
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNK--------------FS----QQYKATIGADFVTKELQMD-----DKLVT 62 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~--------------~~----~~~~~~~~~~~~~~~~~~~-----~~~~~ 62 (210)
..+-+...+|+|+|+.++|||||..+|+... +. .+...++++.-....+... ...+.
T Consensus 7 ~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~ 86 (709)
T 4fn5_A 7 TTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYR 86 (709)
T ss_dssp CSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEE
T ss_pred CCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEE
Confidence 3344678899999999999999999986211 00 0111111211112222222 23578
Q ss_pred EEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC
Q 028305 63 LQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG 136 (210)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~ 136 (210)
++++|||||.+|.......++-+|++|+|+|+...-......-|...... ++|.++++||+|....
T Consensus 87 iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~--------~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 87 VNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY--------GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp EEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH--------TCCEEEEEECSSSTTC
T ss_pred EEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc--------CCCeEEEEccccccCc
Confidence 99999999999999999999999999999999876555554444444433 7899999999998644
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.62 E-value=7.6e-16 Score=118.49 Aligned_cols=159 Identities=17% Similarity=0.109 Sum_probs=92.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCC-------------------eEEEEEEEeCCCccc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDD-------------------KLVTLQIWDTAGQER 73 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~ 73 (210)
++|+++|.||+|||||+++|.+........+..+.........+.+ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999997643211112111111112222221 235699999999765
Q ss_pred ccc----c---ccccccCCcEEEEEEECCCh----------hhHHHHHHHHHHH--------------------------
Q 028305 74 FQS----L---GSAFYRGADCCVLVYDVNVQ----------KTFESLQNWREEF-------------------------- 110 (210)
Q Consensus 74 ~~~----~---~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~l-------------------------- 110 (210)
... + ....++.+|++++|+|+++. +.+..+..+..++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 421 2 22347899999999999852 1122111110100
Q ss_pred ---------HHhcCC--------------------CCCCCCCEEEEEecCCCCCCC-CcccchHHHHHHHHHcCCCcEEE
Q 028305 111 ---------LKQADP--------------------GEHEACPFVLLGNKIDTDGGS-SRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 111 ---------~~~~~~--------------------~~~~~~p~ilv~~K~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
...+.. ......|+++++||.|..-.. ......+.++.++...+ .++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g-~~vv~ 240 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEG-AEVVV 240 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHT-CEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcC-CeEEE
Confidence 000000 011247999999999842111 12345677778887777 78999
Q ss_pred ecCCCCCChHHH
Q 028305 161 TSAKEDCNIDEA 172 (210)
Q Consensus 161 ~Sa~~~~~v~~~ 172 (210)
+||+...++.++
T Consensus 241 iSAk~E~el~eL 252 (368)
T 2dby_A 241 VSARLEAELAEL 252 (368)
T ss_dssp ECHHHHHHHHTS
T ss_pred eechhHHHHHHh
Confidence 999875555433
No 203
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.8e-14 Score=110.87 Aligned_cols=140 Identities=16% Similarity=0.070 Sum_probs=93.8
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc-------cccccc
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ-------SLGSAF 81 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~ 81 (210)
+....+|+++|.||+|||||+|+|++........|+++.+.....+.+.+ .+++++||||...-. ......
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 44567999999999999999999998776556667778888888888887 568889999953211 112344
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCC------CCcccchHHHHHHHHHcC
Q 028305 82 YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGG------SSRVVPQKKALEWCAYRG 154 (210)
Q Consensus 82 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~------~~~~~~~~~~~~~~~~~~ 154 (210)
++.+|++++|+|.++|.. .......++..... .....|.++++||.|...- .......++.+.+...+.
T Consensus 147 i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~--~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~ 221 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKPLH--HKQIIEKELEGVGI--RLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYR 221 (376)
T ss_dssp HHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTE--EETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTT
T ss_pred HHhcCccccccccCccHH--HHHHHHHHHHHhhH--hhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhc
Confidence 678999999999998743 22223333333211 1125688899999997421 112334555555555544
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.59 E-value=2.4e-16 Score=129.77 Aligned_cols=116 Identities=21% Similarity=0.253 Sum_probs=80.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc--CCC----------------cccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNK--FSQ----------------QYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (210)
..||+|+|+.++|||||..+|+... ... +...++++. .....+.-....++++|||||.+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~--s~~~~~~~~~~~iNlIDTPGH~D 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQ--TGITSFQWENTKVNIIDTPGHMD 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSS--CCCCCCBCSSCBCCCEECCCSSS
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEE--eeeEEEEECCEEEEEEECCCcHH
Confidence 4589999999999999999987211 110 001111222 22222222346789999999999
Q ss_pred ccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCC
Q 028305 74 FQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGS 137 (210)
Q Consensus 74 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~ 137 (210)
|.......++-+|++|+|+|+...-......-|. ...++ ++|.++++||+|....+
T Consensus 80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~-~a~~~-------~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 80 FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH-ALRKM-------GIPTIFFINKIDQNGID 135 (638)
T ss_dssp THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHH-HHHHH-------TCSCEECCEECCSSSCC
T ss_pred HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH-HHHHc-------CCCeEEEEeccccccCC
Confidence 9999999999999999999998764444433443 33333 78999999999986543
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.59 E-value=7e-16 Score=127.70 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=95.0
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcc-cceee------------------------------------------
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQY-KATIG------------------------------------------ 46 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~------------------------------------------ 46 (210)
....+|+|+|.+++|||||+|+|++..+.+.. ...+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 45679999999999999999999987762111 11100
Q ss_pred --------eEEEEEEEEeCCeEEEEEEEeCCCccc-------------ccccccccc-cCCcEEEEEEECCChhhHHHHH
Q 028305 47 --------ADFVTKELQMDDKLVTLQIWDTAGQER-------------FQSLGSAFY-RGADCCVLVYDVNVQKTFESLQ 104 (210)
Q Consensus 47 --------~~~~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~vi~v~d~~~~~s~~~~~ 104 (210)
.+.....+...+ ...+.++||||... +......++ ..+|++++|+|.++........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 000011111111 12478999999433 222333444 5689999999998753322222
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHH--H-HHHcCCCcEEEecCCCCCChHHHHHHHHHH
Q 028305 105 NWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALE--W-CAYRGNIPYFETSAKEDCNIDEAFLCVAEI 179 (210)
Q Consensus 105 ~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 179 (210)
.+...+.. .+.|+++|+||+|+....... ..... . ....+..+++.+||++|.|++++++.+.+.
T Consensus 208 ~ll~~L~~-------~g~pvIlVlNKiDlv~~~~~~---~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVDP-------QGQRTIGVITKLDLMDEGTDA---RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHCT-------TCSSEEEEEECTTSSCTTCCS---HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHh-------cCCCEEEEEeCcccCCcchhh---HHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 23333321 167999999999997542211 11111 0 000122457889999999999999999874
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.56 E-value=2e-14 Score=106.30 Aligned_cols=115 Identities=13% Similarity=-0.047 Sum_probs=68.0
Q ss_pred EEEEEEeCCCccccccccc------ccccCCcEEEEEEECCChhhHHHHH---HHHHHHHHhcCCCCCCCCCEEEEEecC
Q 028305 61 VTLQIWDTAGQERFQSLGS------AFYRGADCCVLVYDVNVQKTFESLQ---NWREEFLKQADPGEHEACPFVLLGNKI 131 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~vi~v~d~~~~~s~~~~~---~~~~~l~~~~~~~~~~~~p~ilv~~K~ 131 (210)
+.+.+|||||..+...... ..+.. +++++++|........... .+........ ++|+++|+||+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~iv~NK~ 181 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL------GATTIPALNKV 181 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH------TSCEEEEECCG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc------CCCeEEEEecc
Confidence 4699999999876533221 23455 8888888875432222211 1111111111 57999999999
Q ss_pred CCCCCCCcccchH---HHH----H-----------------HHHHcC-CCcEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 132 DTDGGSSRVVPQK---KAL----E-----------------WCAYRG-NIPYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 132 D~~~~~~~~~~~~---~~~----~-----------------~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
|+..........+ +.. . ++...+ ..+++++||++|.|+++++++|.+.+..
T Consensus 182 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 182 DLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp GGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 9865310000001 000 0 123333 2489999999999999999999887754
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.47 E-value=2e-13 Score=104.34 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=62.9
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcc
Q 028305 61 VTLQIWDTAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRV 140 (210)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~ 140 (210)
..+.++||+|..... ......+|.+++++|....+....+... +. ..|.++++||+|+... ..
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~---------~~~~ivvlNK~Dl~~~--~~ 210 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF---------ELADMIAVNKADDGDG--ER 210 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH---------HHCSEEEEECCSTTCC--HH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh---------ccccEEEEEchhccCc--hh
Confidence 568999999964321 2335689999999998654321111111 11 2366888899997532 11
Q ss_pred cchHHHHHHHHH---cC------CCcEEEecCCCCCChHHHHHHHHHHHH
Q 028305 141 VPQKKALEWCAY---RG------NIPYFETSAKEDCNIDEAFLCVAEIAL 181 (210)
Q Consensus 141 ~~~~~~~~~~~~---~~------~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 181 (210)
........+... .. ..+++.+||+++.|++++++.|.+...
T Consensus 211 ~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 211 RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111112222211 11 257899999999999999999988764
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.46 E-value=3.6e-13 Score=101.46 Aligned_cols=97 Identities=20% Similarity=0.096 Sum_probs=77.6
Q ss_pred cccccccccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccc-hHHHHH
Q 028305 71 QERFQSLGSAFYRGADCCVLVYDVNVQK-TFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVP-QKKALE 148 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~-~~~~~~ 148 (210)
++++..+...+++++|++++|+|++++. ++..+..|+..+... ++|+++|+||+|+.+. .... .++...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~-------~~~~ilV~NK~DL~~~--~~v~~~~~~~~ 136 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF-------KVEPVIVFNKIDLLNE--EEKKELERWIS 136 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT-------TCEEEEEECCGGGCCH--HHHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC-------CCCEEEEEEcccCCCc--cccHHHHHHHH
Confidence 6677777788999999999999999986 888888998876542 7899999999999753 2112 345556
Q ss_pred HHHHcCCCcEEEecCCCCCChHHHHHHHH
Q 028305 149 WCAYRGNIPYFETSAKEDCNIDEAFLCVA 177 (210)
Q Consensus 149 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 177 (210)
+++..+ .+++++||++|.|++++++.+.
T Consensus 137 ~~~~~g-~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 137 IYRDAG-YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHTT-CEEEECCTTTCTTHHHHHHHTT
T ss_pred HHHHCC-CeEEEEECCCCCCHHHHHhhcc
Confidence 666666 7999999999999999998764
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.37 E-value=2.7e-13 Score=104.76 Aligned_cols=88 Identities=17% Similarity=0.114 Sum_probs=52.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCe---------------EEEEEEEeCCCcccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDK---------------LVTLQIWDTAGQERF 74 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~ 74 (210)
...++|+++|.+|+|||||+|+|.+........++.+.+.....+.+.+. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45689999999999999999999987664444455555554455544432 235999999997654
Q ss_pred cc-------cccccccCCcEEEEEEECCCh
Q 028305 75 QS-------LGSAFYRGADCCVLVYDVNVQ 97 (210)
Q Consensus 75 ~~-------~~~~~~~~~d~vi~v~d~~~~ 97 (210)
.. ....+++.+|++++|+|+.+.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 33 345667899999999999754
No 210
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.37 E-value=3e-13 Score=94.66 Aligned_cols=110 Identities=12% Similarity=0.008 Sum_probs=71.4
Q ss_pred CCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-CCCCCEEEEEecC-CCCCCCCcccchHHH
Q 028305 69 AGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGE-HEACPFVLLGNKI-DTDGGSSRVVPQKKA 146 (210)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-~~~~p~ilv~~K~-D~~~~~~~~~~~~~~ 146 (210)
+|+..++.+|..|+.++|++|||+|.+|.+..+ ...-+..+........ ..++|++|++||. |+.... ...++
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Am----s~~EI 184 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM----PCFYL 184 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBC----CHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCC----CHHHH
Confidence 378899999999999999999999999876543 2222333344443332 3588999999995 675432 23333
Q ss_pred HHHHH---HcCCCcEEEecCCCCCChHHHHHHHHHHHHhc
Q 028305 147 LEWCA---YRGNIPYFETSAKEDCNIDEAFLCVAEIALKN 183 (210)
Q Consensus 147 ~~~~~---~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 183 (210)
.+... -.+...+..|||.+|+|+.+.++||.+.+...
T Consensus 185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 22221 12346799999999999999999998776443
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.29 E-value=2.8e-11 Score=93.78 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=61.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcC-CCcccceeeeEEEEEEEEeCCe---------------EEEEEEEeCCCccc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKF-SQQYKATIGADFVTKELQMDDK---------------LVTLQIWDTAGQER 73 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~ 73 (210)
....+|+++|++|+|||||+|.|.+... .....|+.+.+.....+.+.+. ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3467999999999999999999998765 4444555555555555555541 13589999999443
Q ss_pred -------ccccccccccCCcEEEEEEECCC
Q 028305 74 -------FQSLGSAFYRGADCCVLVYDVNV 96 (210)
Q Consensus 74 -------~~~~~~~~~~~~d~vi~v~d~~~ 96 (210)
+.......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22233445688999999999863
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.19 E-value=2.9e-12 Score=94.06 Aligned_cols=110 Identities=12% Similarity=0.005 Sum_probs=72.7
Q ss_pred CCCcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-CCCCCEEEEEec-CCCCCCCCcccchHH
Q 028305 68 TAGQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGE-HEACPFVLLGNK-IDTDGGSSRVVPQKK 145 (210)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-~~~~p~ilv~~K-~D~~~~~~~~~~~~~ 145 (210)
.+|+...+.+|..|+.++|++|||+|.+|.+.++ ...-+.++........ ..+.|++|++|| .|+.+.. ...+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Am----s~~E 268 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM----PCFY 268 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBC----CHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCC----CHHH
Confidence 3578899999999999999999999999986543 2221122212111110 127899999997 5786542 2233
Q ss_pred HHHHHH---HcCCCcEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 146 ALEWCA---YRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 146 ~~~~~~---~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
+.+... -.+...+..+||.+|+|+.+.++||.+.+..
T Consensus 269 I~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 269 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 322211 1134679999999999999999999987643
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.15 E-value=6.8e-11 Score=92.24 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=74.1
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcc----cceeeeEEEEEEEEeCCeEEEEEEEeCCCccccc------
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQY----KATIGADFVTKELQMDDKLVTLQIWDTAGQERFQ------ 75 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------ 75 (210)
.......++++|+|++|+|||||++.|.+..+.... .+..............+....+.++|++|.....
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~ 115 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSY 115 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhh
Confidence 344555688999999999999999999876543211 1222222111222222323468899998853211
Q ss_pred ------------cccccc---------ccC--CcE-EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecC
Q 028305 76 ------------SLGSAF---------YRG--ADC-CVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKI 131 (210)
Q Consensus 76 ------------~~~~~~---------~~~--~d~-vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~ 131 (210)
.....+ ... +|+ ++++.|...+-+-.. ..+.+.+.. ++|+|+|.+|+
T Consensus 116 ~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-----ieilk~L~~----~~~vI~Vi~Kt 186 (427)
T 2qag_B 116 KPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-----LVTMKKLDS----KVNIIPIIAKA 186 (427)
T ss_dssp HHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-----HHHHHHTCS----CSEEEEEESCG
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-----HHHHHHHhh----CCCEEEEEcch
Confidence 001111 112 233 555555544322222 122222222 78999999999
Q ss_pred CCCCCCCcccchHHHHHHHHHcCCCcEEEecC
Q 028305 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSA 163 (210)
Q Consensus 132 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (210)
|.............+.......+ ++++.+|.
T Consensus 187 D~Lt~~E~~~l~~~I~~~L~~~g-i~I~~is~ 217 (427)
T 2qag_B 187 DAISKSELTKFKIKITSELVSNG-VQIYQFPT 217 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHBTTB-CCCCCCC-
T ss_pred hccchHHHHHHHHHHHHHHHHcC-CcEEecCC
Confidence 98754222233333333233344 66777764
No 214
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.13 E-value=1.1e-10 Score=86.50 Aligned_cols=139 Identities=16% Similarity=0.205 Sum_probs=73.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCcCCCc--------ccc-eeeeEEEEEEEEeCCeEEEEEEEeCCCcccccc------
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNKFSQQ--------YKA-TIGADFVTKELQMDDKLVTLQIWDTAGQERFQS------ 76 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------ 76 (210)
.|+++|+|+.|+|||||++.|.+...+.. ..+ +..........+..+....+.++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 58999999999999999999986443211 000 000011011111112223688999998322100
Q ss_pred cc----------------------cccccCCcEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCC
Q 028305 77 LG----------------------SAFYRGADCCVLVYDVN-VQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDT 133 (210)
Q Consensus 77 ~~----------------------~~~~~~~d~vi~v~d~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~ 133 (210)
.. ...+..+++.++++|.. .+-.-.. ...+..+.. .+++++|++|+|.
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~--------~~~vI~Vi~K~D~ 152 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK--------VVNIIPVIAKADT 152 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT--------TSEEEEEETTGGG
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh--------cCcEEEEEecccc
Confidence 00 00123468888998865 2222111 233333332 3689999999998
Q ss_pred CCCCCcccchHHHHHHHHHcCCCcEEE
Q 028305 134 DGGSSRVVPQKKALEWCAYRGNIPYFE 160 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210)
....+.....+.+.......+ +.++.
T Consensus 153 lt~~e~~~~k~~i~~~l~~~~-i~i~~ 178 (270)
T 3sop_A 153 MTLEEKSEFKQRVRKELEVNG-IEFYP 178 (270)
T ss_dssp SCHHHHHHHHHHHHHHHHHTT-CCCSS
T ss_pred CCHHHHHHHHHHHHHHHHHcC-ccccC
Confidence 764334444455555555555 55543
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.06 E-value=2e-11 Score=94.44 Aligned_cols=140 Identities=18% Similarity=0.187 Sum_probs=80.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC------cCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc-------c
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN------KFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG-------S 79 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~ 79 (210)
.+|+++|.+|+|||||+|+|++. .......++++.+.. ....... +.++||||........ .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMI--EIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEE--EEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeE--EEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 57999999999999999999975 222233334433332 2333322 7899999954322111 1
Q ss_pred ccc---cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCC
Q 028305 80 AFY---RGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNI 156 (210)
Q Consensus 80 ~~~---~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
..+ +..+.++++++......+..+.. + ......+.|+++++||.|... ..........+.+..+ .
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l----~~l~~~~~~~~~v~~k~d~~~---~~~~~~~~~~~~~~~g-~ 305 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----L----DYIKGGRRSFVCYMANELTVH---RTKLEKADSLYANQLG-E 305 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----E----EEEESSSEEEEEEECTTSCEE---EEEGGGHHHHHHHHBT-T
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----E----EEccCCCceEEEEecCCcccc---cccHHHHHHHHHHhcC-C
Confidence 112 56789999998743211111111 1 011112679999999999865 3333344444455555 5
Q ss_pred cEEEecCCCCCCh
Q 028305 157 PYFETSAKEDCNI 169 (210)
Q Consensus 157 ~~~~~Sa~~~~~v 169 (210)
.+.+.++.+..++
T Consensus 306 ~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 306 LLSPPSKRYAAEF 318 (369)
T ss_dssp TBCSSCGGGTTTC
T ss_pred ccCCCCchhhhhc
Confidence 6666666654444
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.02 E-value=1.7e-10 Score=92.12 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=83.6
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHh------hCcCC----Cccccee-----------eeEEEEEEEE-------------
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYV------YNKFS----QQYKATI-----------GADFVTKELQ------------- 55 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~------------- 55 (210)
..+..|+|+|.+||||||++++|. +.... +.+.+.. +..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 457789999999999999999988 22211 0000000 0111110000
Q ss_pred eCCeEEEEEEEeCCCcccccc-c---cccc--ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCE-EEEE
Q 028305 56 MDDKLVTLQIWDTAGQERFQS-L---GSAF--YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPF-VLLG 128 (210)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~~~~-~---~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~-ilv~ 128 (210)
.....+.+.|+||||...... . .... ...+|.+++|+|......... ....+.. .+|+ ++|+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~--------~~~i~gvVl 247 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD--------KVDVASVIV 247 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH--------HHCCCCEEE
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh--------hcCceEEEE
Confidence 000235689999999653211 1 1111 126899999999987533211 1222222 1364 8999
Q ss_pred ecCCCCCCCCcccchHHHHHHHHHcC-----------------CCcEEEecCCCCCC-hHHHHHHHHHH
Q 028305 129 NKIDTDGGSSRVVPQKKALEWCAYRG-----------------NIPYFETSAKEDCN-IDEAFLCVAEI 179 (210)
Q Consensus 129 ~K~D~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~~-v~~~~~~l~~~ 179 (210)
||+|...... .........+ ..+.+.+|+..|.| +.++++++.+.
T Consensus 248 NK~D~~~~~g------~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 248 TKLDGHAKGG------GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp ECTTSCCCCT------HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred eCCccccchH------HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 9999864311 1111222222 11234578999999 99999998776
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.02 E-value=7.3e-10 Score=85.59 Aligned_cols=101 Identities=16% Similarity=0.072 Sum_probs=73.2
Q ss_pred CcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC-cccchHHHHH
Q 028305 70 GQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS-RVVPQKKALE 148 (210)
Q Consensus 70 g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~-~~~~~~~~~~ 148 (210)
..++|......+.+.++++++|+|++++. ..|...+.+... +.|+++|+||+|+.+... .....+....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-----~~p~ilV~NK~DL~~~~~~~~~~~~~l~~ 124 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-----NNKVLLVGNKADLIPKSVKHDKVKHWMRY 124 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-----SSCEEEEEECGGGSCTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-----CCcEEEEEEChhcCCcccCHHHHHHHHHH
Confidence 45678888888888999999999999863 455566665543 679999999999975321 1122233344
Q ss_pred HHHHcCC--CcEEEecCCCCCChHHHHHHHHHHH
Q 028305 149 WCAYRGN--IPYFETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 149 ~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
.++..+. ..++.+||++|.|++++++.+.+..
T Consensus 125 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 125 SAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 4555562 2799999999999999999987643
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.95 E-value=6e-11 Score=91.63 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=73.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCC-------CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcccccccc----cc-
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFS-------QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQERFQSLG----SA- 80 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~- 80 (210)
.+|+++|.+|+|||||+|+|++.... ....++++.. ...+..... +.++||||........ ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence 57999999999999999999975311 1222233222 223333332 7899999954332111 11
Q ss_pred ---c--ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCC
Q 028305 81 ---F--YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGN 155 (210)
Q Consensus 81 ---~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
+ .+..+.++++++.........+.. + ......+.|+++++||.|... ..........+.+..+
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~----d~l~~~~~~~~~v~nk~d~~~---~~~~~~~~~~~~~~~g- 303 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR----F----DYVSGGRRAFTCHFSNRLTIH---RTKLEKADELYKNHAG- 303 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----E----EEEESSSEEEEEEECTTSCEE---EEEHHHHHHHHHHHBT-
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEE----E----EEecCCCceEEEEecCccccc---cccHHHHHHHHHHHhC-
Confidence 1 245678888887632211111110 1 011112679999999999875 2333333444444455
Q ss_pred CcEEEecCC
Q 028305 156 IPYFETSAK 164 (210)
Q Consensus 156 ~~~~~~Sa~ 164 (210)
..+.+.++.
T Consensus 304 ~~l~p~~~~ 312 (368)
T 3h2y_A 304 DLLSPPTPE 312 (368)
T ss_dssp TTBCSSCHH
T ss_pred CccCCCchh
Confidence 455555543
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.93 E-value=1.2e-08 Score=79.69 Aligned_cols=164 Identities=14% Similarity=0.142 Sum_probs=87.5
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCcCCCcc-cceeeeEE--EEEEEEeCCeEEEEEEEeCCCccccccccccc-----c
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNKFSQQY-KATIGADF--VTKELQMDDKLVTLQIWDTAGQERFQSLGSAF-----Y 82 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~ 82 (210)
....++|+|++|||||||+|.+.+...+..- ....+.+. ...... ....-.+.+||++|..........+ +
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 4458999999999999999999874322110 00001110 001111 1111247899999854221111111 2
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCC---------CCCCcccchHHHHHHH---
Q 028305 83 RGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTD---------GGSSRVVPQKKALEWC--- 150 (210)
Q Consensus 83 ~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~---------~~~~~~~~~~~~~~~~--- 150 (210)
...+.+++ ++...... .. ......+... +.|+++|.||.|+. +...+....+.++.+.
T Consensus 147 ~~~~~~~~-lS~G~~~k-qr-v~la~aL~~~-------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~ 216 (413)
T 1tq4_A 147 YEYDFFII-ISATRFKK-ND-IDIAKAISMM-------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT 216 (413)
T ss_dssp GGCSEEEE-EESSCCCH-HH-HHHHHHHHHT-------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCCccH-HH-HHHHHHHHhc-------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 33455554 66652111 11 1122222221 66999999999962 1111222333444443
Q ss_pred -HHc--CCCcEEEecC--CCCCChHHHHHHHHHHHHhccc
Q 028305 151 -AYR--GNIPYFETSA--KEDCNIDEAFLCVAEIALKNEH 185 (210)
Q Consensus 151 -~~~--~~~~~~~~Sa--~~~~~v~~~~~~l~~~~~~~~~ 185 (210)
... ....++.+|+ ..+.|++++.+.+.+.+.+..+
T Consensus 217 l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~ 256 (413)
T 1tq4_A 217 FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR 256 (413)
T ss_dssp HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred HHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence 122 1246899999 6677899999999888766654
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.89 E-value=2e-09 Score=83.25 Aligned_cols=101 Identities=15% Similarity=0.088 Sum_probs=72.1
Q ss_pred CcccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCC-cccchHHHHH
Q 028305 70 GQERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSS-RVVPQKKALE 148 (210)
Q Consensus 70 g~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~-~~~~~~~~~~ 148 (210)
.++.|......+...++++++|+|++++.+ .|...+.+... +.|+++|+||+|+.+... .....+....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-----~~piilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-----DNPILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-----TSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-----CCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence 477888888888889999999999999763 34444444433 679999999999975321 1222233344
Q ss_pred HHHHcCC--CcEEEecCCCCCChHHHHHHHHHHH
Q 028305 149 WCAYRGN--IPYFETSAKEDCNIDEAFLCVAEIA 180 (210)
Q Consensus 149 ~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~ 180 (210)
.++..+. ..++.+||++|.|++++++.+.+..
T Consensus 127 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 127 MAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4555553 3789999999999999999987654
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.80 E-value=1.5e-08 Score=75.51 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=69.1
Q ss_pred eCCCcc-cccccccccccCCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccch
Q 028305 67 DTAGQE-RFQSLGSAFYRGADCCVLVYDVNVQKTFES--LQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQ 143 (210)
Q Consensus 67 D~~g~~-~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~ 143 (210)
..|||. .........+..+|+++.|+|+.+|.+... +..+. . +.|.++|+||+|+.+. . ..
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~-----~kp~ilVlNK~DL~~~---~-~~ 68 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------K-----NKPRIMLLNKADKADA---A-VT 68 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------S-----SSCEEEEEECGGGSCH---H-HH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------C-----CCCEEEEEECcccCCH---H-HH
Confidence 578876 445556677899999999999999876542 33322 1 6799999999999752 1 12
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCCChHHHHHHHHHHHHh
Q 028305 144 KKALEWCAYRGNIPYFETSAKEDCNIDEAFLCVAEIALK 182 (210)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 182 (210)
+....+.+..+ .+++.+||+++.|++++++.+.+.+..
T Consensus 69 ~~~~~~~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 69 QQWKEHFENQG-IRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHHHHHTTT-CCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 22333444445 689999999999999999988887754
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.65 E-value=3e-08 Score=73.80 Aligned_cols=58 Identities=19% Similarity=0.358 Sum_probs=35.9
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCC-CcccceeeeEEEEEEEEeCCeEEEEEEEeCCCcc
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFS-QQYKATIGADFVTKELQMDDKLVTLQIWDTAGQE 72 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (210)
...++|+++|.||+|||||+|+|.+.... ....++++.... .+.... .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence 45789999999999999999999976532 223333332221 222222 48899999954
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.60 E-value=1.7e-07 Score=73.63 Aligned_cols=141 Identities=19% Similarity=0.169 Sum_probs=76.5
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhh------CcCC----Ccccc-----------eeeeEEEEEEEEeC------------
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVY------NKFS----QQYKA-----------TIGADFVTKELQMD------------ 57 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~------~~~~----~~~~~-----------~~~~~~~~~~~~~~------------ 57 (210)
.+..|+++|++|+||||++..|.. .... +.+.+ ..+...+......+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 478899999999999999988762 1110 00000 00111110000000
Q ss_pred -CeEEEEEEEeCCCcccccccc----c--ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEec
Q 028305 58 -DKLVTLQIWDTAGQERFQSLG----S--AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNK 130 (210)
Q Consensus 58 -~~~~~~~i~D~~g~~~~~~~~----~--~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K 130 (210)
...+.+.++||+|........ . .....+|.+++|+|......... ....+... -.+..+|+||
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~-------~~i~gVIlTK 248 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA-------TPIGSIIVTK 248 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS-------CTTEEEEEEC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh-------CCCeEEEEEC
Confidence 012568899999943211111 0 11235799999999876543322 22333322 2256799999
Q ss_pred CCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 131 IDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 131 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
.|.... ...+.......+ .++.+++. |++++
T Consensus 249 lD~~~~------gG~~ls~~~~~g-~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 249 LDGSAK------GGGALSAVAATG-APIKFIGT--GEKID 279 (443)
T ss_dssp CSSCSS------HHHHHHHHHTTC-CCEEEEEC--SSSTT
T ss_pred CCCccc------ccHHHHHHHHHC-CCEEEEEc--CCChH
Confidence 998643 223444444555 78877765 66555
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.57 E-value=2.3e-08 Score=73.69 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=34.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCcCCC-cccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNKFSQ-QYKATIGADFVTKELQMDDKLVTLQIWDTAGQER 73 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (210)
++++++|.+|+|||||+|+|.+..... ...++++... ..+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEeCC---CEEEEECCCccc
Confidence 699999999999999999999766532 2222222211 1222222 488999999654
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.45 E-value=9.3e-08 Score=77.73 Aligned_cols=64 Identities=22% Similarity=0.157 Sum_probs=39.4
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhCcCCCcc-----cceeeeEEEEEEEEeCCeEEEEEEEeCCCccc
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQY-----KATIGADFVTKELQMDDKLVTLQIWDTAGQER 73 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (210)
..+.++|+|+|.||+|||||+|+|++....-.. ..+.+.......+ .......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~-~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeeccc-ccCCCceEEEecCCCcCc
Confidence 456789999999999999999999987632111 1111111110001 012234688999999654
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.38 E-value=2.3e-07 Score=72.75 Aligned_cols=91 Identities=19% Similarity=0.128 Sum_probs=52.6
Q ss_pred EEEEEEeCCCccc--ccc----ccccc--ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCC
Q 028305 61 VTLQIWDTAGQER--FQS----LGSAF--YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKID 132 (210)
Q Consensus 61 ~~~~i~D~~g~~~--~~~----~~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D 132 (210)
+.+.++||||... ... ..... ....+.+++|+|......... ....+... -.+..+|+||.|
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~-------~~~~gVIlTKlD 249 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA-------SPIGSVIITKMD 249 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH-------CSSEEEEEECGG
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc-------cCCcEEEEeccc
Confidence 5688999999533 111 11111 124689999999976533222 22333322 236789999999
Q ss_pred CCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChH
Q 028305 133 TDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNID 170 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (210)
.... ...........+ .++.+++. |++++
T Consensus 250 ~~a~------~G~als~~~~~g-~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 250 GTAK------GGGALSAVVATG-ATIKFIGT--GEKID 278 (433)
T ss_dssp GCSC------HHHHHHHHHHHT-CEEEEEEC--CSSSS
T ss_pred cccc------chHHHHHHHHHC-CCEEEEEC--CCChH
Confidence 7632 233444445556 78877775 66653
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.38 E-value=5.6e-07 Score=70.80 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.+..|+++|++|+||||++..|..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.30 E-value=2e-06 Score=64.48 Aligned_cols=92 Identities=23% Similarity=0.162 Sum_probs=53.7
Q ss_pred EEEEEEeCCCccc--ccc-ccc-----ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCC-EEEEEecC
Q 028305 61 VTLQIWDTAGQER--FQS-LGS-----AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACP-FVLLGNKI 131 (210)
Q Consensus 61 ~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p-~ilv~~K~ 131 (210)
+.+.++||||... ... ... .....+|.+++|+|..... ........+.. ..| ..+|.||.
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~--------~~~i~gvVlnk~ 249 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ--------ASKIGTIIITKM 249 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH--------TCTTEEEEEECG
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh--------hCCCCEEEEeCC
Confidence 5689999999654 211 111 1234689999999986432 22222223322 234 77899999
Q ss_pred CCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHHH
Q 028305 132 DTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDEA 172 (210)
Q Consensus 132 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 172 (210)
|.... ...........+ .++..++ .|++++++
T Consensus 250 D~~~~------~g~~~~~~~~~~-~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 250 DGTAK------GGGALSAVAATG-ATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GGCTT------HHHHHHHHHTTT-CCEEEEE--CSSSTTCE
T ss_pred CCCcc------hHHHHHHHHHHC-cCEEEEe--CCCChhhc
Confidence 97532 233445556665 7777775 56666543
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.28 E-value=4.1e-07 Score=66.94 Aligned_cols=93 Identities=16% Similarity=0.027 Sum_probs=60.2
Q ss_pred CCCcccc-cccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHH
Q 028305 68 TAGQERF-QSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKA 146 (210)
Q Consensus 68 ~~g~~~~-~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~ 146 (210)
.|||... .......++++|+++.|+|+.+|.+.... .+. .. ++|.++|+||+|+.+. .. .+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll------~k~~iivlNK~DL~~~---~~-~~~~ 67 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS------RKETIILLNKVDIADE---KT-TKKW 67 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT------TSEEEEEEECGGGSCH---HH-HHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc------CCCcEEEEECccCCCH---HH-HHHH
Confidence 4776633 34556678899999999999988655321 010 00 5699999999999752 11 2233
Q ss_pred HHHHHHcCCCcEEEecCCCCCChHHHHHHHHH
Q 028305 147 LEWCAYRGNIPYFETSAKEDCNIDEAFLCVAE 178 (210)
Q Consensus 147 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 178 (210)
..+.+..+ .++ .+||+++.|++++++.+.+
T Consensus 68 ~~~~~~~g-~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 68 VEFFKKQG-KRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHHHHHTT-CCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHHHHHcC-CeE-EEECCCCcCHHHHHHHHHH
Confidence 33444445 677 9999999999999887654
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.23 E-value=1.3e-06 Score=65.53 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=57.5
Q ss_pred cccccCCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCc
Q 028305 79 SAFYRGADCCVLVYDVNVQKT-FESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIP 157 (210)
Q Consensus 79 ~~~~~~~d~vi~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
...+.++|.+++|+|+.+|.. ...+.+++...... ++|.++|+||+|+.+........+......+..+ .+
T Consensus 81 R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~-------~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g-~~ 152 (307)
T 1t9h_A 81 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN-------DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG-YD 152 (307)
T ss_dssp TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT-------TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-CC
T ss_pred HHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC-------CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC-Ce
Confidence 345789999999999997754 33344444333221 6789999999999764100011233444444556 78
Q ss_pred EEEecCCCCCChHHHHH
Q 028305 158 YFETSAKEDCNIDEAFL 174 (210)
Q Consensus 158 ~~~~Sa~~~~~v~~~~~ 174 (210)
++.+|+.++.|+++++.
T Consensus 153 v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIP 169 (307)
T ss_dssp EEECCHHHHTTCTTTGG
T ss_pred EEEEecCCCCCHHHHHh
Confidence 99999998888775544
No 231
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.07 E-value=1.4e-05 Score=60.60 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=74.9
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCc-cccee--------------------eeEEEEEEEEeC-----------
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQ-YKATI--------------------GADFVTKELQMD----------- 57 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~--------------------~~~~~~~~~~~~----------- 57 (210)
.+.--++++|+.||||||+++.|.+.-.... ..... +..+.......+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 4567899999999999999998863211100 00000 000100000000
Q ss_pred --CeEEEEEEEeCCCccccccccccc------ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEe
Q 028305 58 --DKLVTLQIWDTAGQERFQSLGSAF------YRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGN 129 (210)
Q Consensus 58 --~~~~~~~i~D~~g~~~~~~~~~~~------~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~ 129 (210)
.....+.++|++|........... .-..|..+++.|..... .+......+.+.. + ..++++|
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~------~-it~iilT 276 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV------K-IDGIILT 276 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS------C-CCEEEEE
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc------C-CCEEEEe
Confidence 011335678999954322211111 12368899999976543 2223333343322 2 3478889
Q ss_pred cCCCCCCCCcccchHHHHHHHHHcCCCcEEEecCCCCCChHH
Q 028305 130 KIDTDGGSSRVVPQKKALEWCAYRGNIPYFETSAKEDCNIDE 171 (210)
Q Consensus 130 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (210)
|.|.... ...........+ .++..++ +|+++++
T Consensus 277 KlD~~a~------~G~~l~~~~~~~-~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 277 KLDADAR------GGAALSISYVID-APILFVG--VGQGYDD 309 (328)
T ss_dssp CGGGCSC------CHHHHHHHHHHT-CCEEEEE--CSSSTTC
T ss_pred CcCCccc------hhHHHHHHHHHC-CCEEEEe--CCCCccc
Confidence 9996432 233445555566 7877776 6666654
No 232
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.07 E-value=8.2e-06 Score=67.08 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.|+|+|+.|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998764
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.01 E-value=5.2e-05 Score=58.03 Aligned_cols=85 Identities=11% Similarity=0.037 Sum_probs=54.7
Q ss_pred cccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCCCCCcccchHHHHHHHHHcCCCcEE
Q 028305 81 FYRGADCCVLVYDVNVQK-TFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDGGSSRVVPQKKALEWCAYRGNIPYF 159 (210)
Q Consensus 81 ~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (210)
.+.++|.+++|.... |. +...+..++...... ++|.++|+||+|+.+.... ...+.........+ ++++
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~-------~~~~iivlNK~DL~~~~~~-~~~~~~~~~y~~~G-~~v~ 196 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL-------QVEPLIVLNKIDLLDDEGM-DFVNEQMDIYRNIG-YRVL 196 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH-------TCEEEEEEECGGGCCHHHH-HHHHHHHHHHHTTT-CCEE
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc-------CCCEEEEEECccCCCchhH-HHHHHHHHHHHhCC-CcEE
Confidence 467899999887654 54 334455554433332 6688999999999753100 00122223334455 7899
Q ss_pred EecCCCCCChHHHHHH
Q 028305 160 ETSAKEDCNIDEAFLC 175 (210)
Q Consensus 160 ~~Sa~~~~~v~~~~~~ 175 (210)
.+|+.++.|++++...
T Consensus 197 ~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 197 MVSSHTQDGLKPLEEA 212 (358)
T ss_dssp ECBTTTTBTHHHHHHH
T ss_pred EEecCCCcCHHHHHHh
Confidence 9999999999987654
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.98 E-value=4.3e-07 Score=72.49 Aligned_cols=102 Identities=13% Similarity=0.010 Sum_probs=57.2
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhCcCCCcccceeeeEEEEEEEEeCCeEEEEEEEeCCCccc--ccccc--------c
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYNKFSQQYKATIGADFVTKELQMDDKLVTLQIWDTAGQER--FQSLG--------S 79 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~ 79 (210)
...+.|+++|.+||||||+.++|...... ...++.............+......+||..|... ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999998743211 1111111000000000011112346789888632 22222 4
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHh
Q 028305 80 AFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQ 113 (210)
Q Consensus 80 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~ 113 (210)
.++...++.++|+|.++. +.+....|...+...
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 455567888999999987 455556666655543
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.91 E-value=1.3e-05 Score=63.07 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.9
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
..+..-|.|+|++++|||+|+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 457788999999999999999999863
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.65 E-value=2.8e-05 Score=53.75 Aligned_cols=22 Identities=45% Similarity=0.815 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
+++++|++|||||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.56 E-value=4.4e-05 Score=52.76 Aligned_cols=22 Identities=27% Similarity=0.652 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998853
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.51 E-value=5.4e-05 Score=53.20 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.++|+|++|||||||++.|.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 239
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.51 E-value=6.5e-05 Score=53.17 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.4
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
......|+++|+.|||||||++.|.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999998875
No 240
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.47 E-value=9.4e-05 Score=50.68 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.1
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.....|+++|++||||||+.+.|..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3445799999999999999998864
No 241
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.44 E-value=9e-05 Score=51.91 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=22.2
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
....--|+|+|++|+|||||++.|...
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 334456899999999999999999854
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.42 E-value=8e-05 Score=52.34 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999998864
No 243
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.41 E-value=8.5e-05 Score=51.57 Aligned_cols=21 Identities=29% Similarity=0.676 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (210)
++|+|+.|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999998853
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.40 E-value=8.6e-05 Score=51.59 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-.|+++|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999865
No 245
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.39 E-value=0.00012 Score=51.78 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=22.8
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
......|+|+|++|||||||++.|.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999988743
No 246
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.37 E-value=7.9e-05 Score=51.03 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028305 14 KVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~ 33 (210)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999644
No 247
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.37 E-value=4.9e-05 Score=57.02 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
-.++|+|++|+|||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 378999999999999999998643
No 248
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.35 E-value=0.00011 Score=51.96 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-++|+|+.|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998754
No 249
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.35 E-value=0.00011 Score=52.42 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
-++|+|+.|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999988643
No 250
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.34 E-value=0.00046 Score=54.36 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~ 33 (210)
..+..|+++|.+|+||||++..|.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456788999999999999998876
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.34 E-value=0.00011 Score=52.36 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++|+|+.|||||||++.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998863
No 252
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.33 E-value=0.00013 Score=51.26 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=20.8
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...-.|+|+|++|||||||++.|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999998864
No 253
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.32 E-value=0.00012 Score=51.71 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
--|+|+|++|||||||++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358899999999999999998653
No 254
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.31 E-value=0.00013 Score=50.61 Aligned_cols=21 Identities=29% Similarity=0.676 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (210)
|+|+||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999854
No 255
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.30 E-value=0.00015 Score=50.26 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=22.7
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.......|+++|++||||||+.+.|...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3334568999999999999999988754
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.29 E-value=0.00015 Score=50.98 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
...|+|+|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999988654
No 257
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.28 E-value=0.00016 Score=48.92 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999988654
No 258
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.27 E-value=0.00019 Score=49.18 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..|+|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999885
No 259
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.25 E-value=0.00014 Score=51.09 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..|+|+|++||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 260
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.24 E-value=0.00017 Score=50.76 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
..-|+|+|++|||||||++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 345899999999999999998753
No 261
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.23 E-value=0.00017 Score=49.10 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 028305 13 LKVIVLGDSGVGKTSLMNQY 32 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l 32 (210)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.23 E-value=0.00019 Score=48.98 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.|+++|++||||||+.+.|..
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998874
No 263
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.22 E-value=0.00024 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 264
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.21 E-value=0.00017 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999887543
No 265
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.21 E-value=0.00026 Score=49.12 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...|+|.|++||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.20 E-value=0.0002 Score=49.68 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
-++++|++|||||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999974
No 267
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.19 E-value=0.00023 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.691 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~ 33 (210)
+..|+|+|++|||||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999987
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.19 E-value=0.00022 Score=48.51 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 269
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.18 E-value=0.0002 Score=50.80 Aligned_cols=21 Identities=24% Similarity=0.604 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~ 33 (210)
++|+|.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999885
No 270
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.18 E-value=0.00022 Score=54.60 Aligned_cols=24 Identities=42% Similarity=0.509 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCcC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNKF 37 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~~ 37 (210)
.++|+|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999996543
No 271
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.17 E-value=0.00021 Score=50.69 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~ 33 (210)
++|+|+|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999885
No 272
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.16 E-value=0.00021 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 273
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.15 E-value=0.00025 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988643
No 274
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.14 E-value=0.00028 Score=49.49 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=22.8
Q ss_pred cccceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 8 KRRNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 8 ~~~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
....++.|+|.|++||||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345567899999999999999998864
No 275
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.14 E-value=0.00023 Score=49.01 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988753
No 276
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.14 E-value=0.00032 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.1
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..++.|+|.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999998863
No 277
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.14 E-value=0.00023 Score=49.62 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999998875
No 278
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.14 E-value=0.00026 Score=50.04 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
+.|+|+|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988863
No 279
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.12 E-value=0.00026 Score=51.94 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
=.++|+|+.|||||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999998875
No 280
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.12 E-value=0.00036 Score=48.15 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 281
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.11 E-value=0.00027 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999988764
No 282
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.11 E-value=0.00026 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999887643
No 283
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.11 E-value=0.00029 Score=52.76 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999988753
No 284
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.10 E-value=0.00034 Score=48.51 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...|+|.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 285
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.10 E-value=0.00027 Score=51.91 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887643
No 286
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.09 E-value=0.00036 Score=48.80 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=22.7
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
...+..|+|+|++||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 345678999999999999999998764
No 287
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.08 E-value=0.00033 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.-++|+|++|||||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999854
No 288
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.08 E-value=0.0086 Score=47.20 Aligned_cols=66 Identities=26% Similarity=0.305 Sum_probs=41.0
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhh------------------CcCCC---cccceeeeEEEEEEE---EeCCeEEEEE
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVY------------------NKFSQ---QYKATIGADFVTKEL---QMDDKLVTLQ 64 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~------------------~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~ 64 (210)
..+..-|.|+|+.++|||+|+|.|+. ..|.. ....|.|+-.-...+ ..++....+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 45677888999999999999996541 12221 122233333221111 1256678899
Q ss_pred EEeCCCcccc
Q 028305 65 IWDTAGQERF 74 (210)
Q Consensus 65 i~D~~g~~~~ 74 (210)
++||.|..+.
T Consensus 144 llDTEG~~d~ 153 (457)
T 4ido_A 144 LMDTQGTFDS 153 (457)
T ss_dssp EEEECCBTCT
T ss_pred EEeccCCCCc
Confidence 9999995543
No 289
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.08 E-value=0.00032 Score=50.72 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988754
No 290
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.08 E-value=0.00032 Score=49.27 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.+|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999875
No 291
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.07 E-value=0.00027 Score=50.06 Aligned_cols=22 Identities=36% Similarity=0.373 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998865
No 292
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.06 E-value=0.0003 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999887643
No 293
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.06 E-value=0.00029 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999888643
No 294
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.06 E-value=0.00038 Score=48.26 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 295
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.06 E-value=0.00041 Score=48.78 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 296
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.05 E-value=0.00032 Score=50.40 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|||||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999888643
No 297
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.05 E-value=0.00036 Score=50.64 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987643
No 298
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.05 E-value=0.00034 Score=47.94 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999874
No 299
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.04 E-value=0.00033 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999988764
No 300
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.04 E-value=0.00036 Score=50.73 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887643
No 301
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.04 E-value=0.00042 Score=48.07 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
+..|+|.|++||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 302
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.04 E-value=0.00035 Score=49.73 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...|+|+|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998863
No 303
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.04 E-value=0.0005 Score=51.92 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.6
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...++-|+|+|++|||||||++.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999999998764
No 304
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.03 E-value=0.00035 Score=48.90 Aligned_cols=21 Identities=24% Similarity=0.552 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998874
No 305
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.03 E-value=0.00034 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988864
No 306
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.03 E-value=0.00036 Score=50.51 Aligned_cols=20 Identities=35% Similarity=0.788 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028305 14 KVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~ 33 (210)
-++++|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 307
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.03 E-value=0.00041 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998764
No 308
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.03 E-value=0.0061 Score=42.97 Aligned_cols=66 Identities=20% Similarity=0.099 Sum_probs=45.4
Q ss_pred EEEEEEeCCCc-ccccccccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCCEEEEEecCCCCC
Q 028305 61 VTLQIWDTAGQ-ERFQSLGSAFYRGADCCVLVYDVNVQKTFESLQNWREEFLKQADPGEHEACPFVLLGNKIDTDG 135 (210)
Q Consensus 61 ~~~~i~D~~g~-~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~~~p~ilv~~K~D~~~ 135 (210)
+.+.++|+|+. .. ......+..+|.+|++...+ ..+...+...+..+.... +.++.+|.|+.|...
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~------~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG------NNRFRILLTIIPPYP 134 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC------SSSEEEEECSBCCTT
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc------CCCEEEEEEecCCcc
Confidence 56889999886 32 23345567899999998765 455566666666665432 456889999998653
No 309
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.02 E-value=0.00052 Score=51.70 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=23.0
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.....-|+|+|++|||||||++.|.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 456778999999999999999988753
No 310
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.02 E-value=0.00035 Score=51.07 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999888643
No 311
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.02 E-value=0.00034 Score=49.58 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998863
No 312
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.02 E-value=0.00036 Score=50.83 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988764
No 313
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.02 E-value=0.00043 Score=50.44 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=21.7
Q ss_pred ccccceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 7 MKRRNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 7 ~~~~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
+....++.|+|.|++||||||+.+.|..
T Consensus 17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 17 PNGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3445678999999999999999998864
No 314
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.02 E-value=0.00055 Score=48.20 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.3
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.....|+++|++||||||+.+.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44578999999999999999998753
No 315
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.01 E-value=0.00037 Score=49.21 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.9
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
....|+|.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998874
No 316
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.01 E-value=0.00038 Score=50.71 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 317
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.00 E-value=0.00048 Score=48.51 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999874
No 318
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.00 E-value=0.00038 Score=49.68 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-++|+|++|||||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999863
No 319
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.00 E-value=0.00056 Score=50.95 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.0
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHh
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~ 33 (210)
......|+|+|++|||||||.+.|.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999998765
No 320
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.00 E-value=0.0004 Score=51.09 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 321
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.00 E-value=0.00052 Score=51.07 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.8
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..+.-|+|.|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999999874
No 322
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.99 E-value=0.00041 Score=49.32 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.7
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..+.|+|.|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998863
No 323
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.99 E-value=0.00045 Score=47.81 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 324
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.99 E-value=0.00042 Score=50.78 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5799999999999999998864
No 325
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.99 E-value=0.00045 Score=48.41 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.....|+|+|++||||||+.+.|..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999998864
No 326
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.98 E-value=0.00024 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=14.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh-hC
Q 028305 14 KVIVLGDSGVGKTSLMNQYV-YN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~-~~ 35 (210)
-++|+|+.|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999988 54
No 327
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.98 E-value=0.00036 Score=52.28 Aligned_cols=23 Identities=39% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|++|||||||+|.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998654
No 328
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.98 E-value=0.0004 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.673 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~ 33 (210)
...|+|.|++||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999886
No 329
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.98 E-value=0.00048 Score=48.55 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 330
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.97 E-value=0.0004 Score=51.23 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++|+|+.|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887643
No 331
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.97 E-value=0.00046 Score=51.14 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|||||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999887643
No 332
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.97 E-value=0.00041 Score=50.63 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999888643
No 333
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.96 E-value=0.00049 Score=47.47 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 334
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.96 E-value=0.00025 Score=48.55 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++|+|++|||||||++.|.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
No 335
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.96 E-value=0.00067 Score=47.55 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.....|+|.|++||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998863
No 336
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.96 E-value=0.00043 Score=51.91 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028305 14 KVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~ 33 (210)
.++++|++|+|||||+|.|.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999998
No 337
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.95 E-value=0.00058 Score=49.51 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=21.5
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.....|+|+|+.|||||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
No 338
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.94 E-value=0.00072 Score=46.72 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.0
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
......|+|+|.+||||||+.+.|..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 339
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.94 E-value=0.00037 Score=46.54 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998754
No 340
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.93 E-value=0.00046 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999887643
No 341
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.92 E-value=0.0005 Score=50.81 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (210)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998853
No 342
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.91 E-value=0.00039 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~ 33 (210)
...|+|+|++||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 343
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.90 E-value=0.0005 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.-+++|+|++|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988754
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.90 E-value=0.00057 Score=46.32 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 345
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.90 E-value=0.00058 Score=50.11 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988654
No 346
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.89 E-value=0.00053 Score=52.61 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.++|+|+.|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999875
No 347
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.89 E-value=0.00055 Score=47.60 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...|+|.|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 348
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.89 E-value=0.00084 Score=47.09 Aligned_cols=25 Identities=36% Similarity=0.268 Sum_probs=21.7
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.....|+|+|++|||||||++.|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
No 349
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.89 E-value=0.0006 Score=47.74 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
...|+|.|++||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999998754
No 350
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.89 E-value=0.00056 Score=48.88 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
No 351
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.88 E-value=0.00053 Score=47.13 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~ 33 (210)
...|+++|++||||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4568999999999999999886
No 352
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.87 E-value=0.00051 Score=46.99 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999998863
No 353
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.86 E-value=0.00057 Score=49.84 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.3
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...+..|+++|++||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 354
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.85 E-value=0.00065 Score=49.45 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (210)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998853
No 355
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.85 E-value=0.00072 Score=46.08 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..+.|+|++|||||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999884
No 356
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.84 E-value=0.00076 Score=46.35 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.-.+++.|++|+|||+|++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988743
No 357
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.84 E-value=0.00044 Score=51.89 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++|+|+.|||||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999887753
No 358
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.84 E-value=0.00042 Score=47.66 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=16.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 359
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.82 E-value=0.00089 Score=50.31 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.9
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.....|+|+|+.|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998875
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.81 E-value=0.00083 Score=49.19 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
No 361
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.79 E-value=0.00069 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
-++++|+.|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999888644
No 362
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.79 E-value=0.00074 Score=50.29 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988754
No 363
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.79 E-value=0.0033 Score=47.91 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 028305 15 VIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~ 34 (210)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.79 E-value=0.00074 Score=46.81 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
No 365
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.79 E-value=0.00078 Score=52.05 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
=.++|+|++|||||||++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999875
No 366
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.78 E-value=0.00071 Score=47.14 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...|+|.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 367
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.78 E-value=0.00076 Score=50.58 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~ 33 (210)
..-.|+++|+.||||||+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 34578999999999999999876
No 368
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.77 E-value=0.00076 Score=46.91 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
-|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 369
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.77 E-value=0.001 Score=47.25 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.+.|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 370
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.77 E-value=0.00031 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 371
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.76 E-value=0.00073 Score=51.33 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++|+|+.|||||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998864
No 372
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.75 E-value=0.00086 Score=48.19 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=20.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
....|+|+|++||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998863
No 373
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.75 E-value=0.00082 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
-++++|+.|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 36899999999999999887643
No 374
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.75 E-value=0.00086 Score=48.92 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998863
No 375
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.75 E-value=0.0013 Score=46.84 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
-|+|+|+|||||+|...+|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999988863
No 376
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.74 E-value=0.00077 Score=51.84 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++|+|+.|||||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999998864
No 377
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.74 E-value=0.00084 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
-++++|+.|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999888643
No 378
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.73 E-value=0.00088 Score=50.21 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.3
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~ 33 (210)
..--++++|+.||||||+++.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 45578999999999999999876
No 379
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.73 E-value=0.0011 Score=49.21 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.6
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~ 33 (210)
..++.|+|.|++||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999999999886
No 380
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.72 E-value=0.00086 Score=50.99 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998754
No 381
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.72 E-value=0.00088 Score=51.38 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 36899999999999999888643
No 382
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.72 E-value=0.00086 Score=52.55 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++|+|+.|||||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998854
No 383
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.71 E-value=0.00094 Score=45.41 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 384
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.71 E-value=0.00091 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37899999999999999888643
No 385
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.71 E-value=0.00092 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999888643
No 386
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.69 E-value=0.001 Score=48.46 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~ 33 (210)
...|+|+|++||||||+.+.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999887
No 387
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.69 E-value=0.0054 Score=46.46 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=21.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
....|++.|++|+|||+|++.+...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3446999999999999999998643
No 388
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.69 E-value=0.00098 Score=49.22 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (210)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999998853
No 389
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.68 E-value=0.001 Score=47.88 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~ 33 (210)
.++.|++.|++||||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999876
No 390
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.67 E-value=0.001 Score=47.39 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-++++|++|+|||||++.+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998743
No 391
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.66 E-value=0.001 Score=51.35 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 37899999999999999988653
No 392
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.66 E-value=0.001 Score=45.78 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.|+|+|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988863
No 393
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.65 E-value=0.0011 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
-++++|+.|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999887543
No 394
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.64 E-value=0.001 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++|+|++|||||||++.+.+--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999988543
No 395
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.63 E-value=0.00094 Score=45.73 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988743
No 396
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.63 E-value=0.0013 Score=44.56 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998753
No 397
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.60 E-value=0.0016 Score=44.70 Aligned_cols=23 Identities=30% Similarity=0.219 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...|+++|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998875
No 398
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.59 E-value=0.0014 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=20.8
Q ss_pred cceEEEEEEcCCCCcHHHHHHHH
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQY 32 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l 32 (210)
....||+++|.+|||||||++++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 46899999999999999999875
No 399
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.59 E-value=0.00085 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
-++++|+.|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999888643
No 400
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.58 E-value=0.0014 Score=46.85 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..-.++|.|++|+|||+|++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998874
No 401
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.58 E-value=0.0013 Score=47.87 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
+-.+++.|++|+|||+|++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446999999999999999998753
No 402
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.56 E-value=0.0013 Score=49.07 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
No 403
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.55 E-value=0.0017 Score=46.53 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=22.2
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
....-|+|.|+.|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44567999999999999999988754
No 404
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.55 E-value=0.002 Score=44.94 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.1
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...+.|+++|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999998874
No 405
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.54 E-value=0.0016 Score=45.49 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-.+++.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999988753
No 406
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.53 E-value=0.0012 Score=46.30 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.+++.||||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988874
No 407
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.52 E-value=0.0014 Score=50.93 Aligned_cols=21 Identities=33% Similarity=0.733 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.++++|+.|||||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 478999999999999998875
No 408
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.51 E-value=0.0021 Score=46.11 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...-|+|.|++||||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999998874
No 409
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.50 E-value=0.0016 Score=46.07 Aligned_cols=21 Identities=33% Similarity=0.232 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 410
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.50 E-value=0.0016 Score=46.78 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998864
No 411
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.48 E-value=0.0022 Score=45.23 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.0
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.....|+++|.+||||||+.+.|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998764
No 412
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.46 E-value=0.00083 Score=51.44 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
-++++|+.|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999888643
No 413
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.46 E-value=0.0019 Score=48.20 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.6
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
..+..+++.|+||+|||+|.+.+...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44567888899999999999998753
No 414
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.46 E-value=0.0013 Score=49.61 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCc
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.--++|+|+.|||||||++.+.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3457899999999999999998653
No 415
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.45 E-value=0.0018 Score=44.48 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998753
No 416
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.44 E-value=0.0019 Score=49.37 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988754
No 417
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.43 E-value=0.002 Score=48.02 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 418
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.43 E-value=0.0027 Score=48.72 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.1
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...--++++|+.||||||+++.|.+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHh
Confidence 3456799999999999999998763
No 419
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.42 E-value=0.0018 Score=50.06 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=20.7
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..-.++++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344789999999999999999885
No 420
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0018 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-.++|+|+.|||||||++.|.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 35899999999999999988754
No 421
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.36 E-value=0.0028 Score=50.50 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=20.6
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~ 33 (210)
...--++|+|+.|||||||++.|.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHH
Confidence 345678999999999999999876
No 422
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.33 E-value=0.0023 Score=42.30 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=21.7
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhCc
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
....|++.|++|+|||++.+.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34569999999999999999987543
No 423
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.32 E-value=0.0023 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
-.|+++|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998863
No 424
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.32 E-value=0.0033 Score=46.17 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.3
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
......+++.|++|+|||+|++.+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456778999999999999999998753
No 425
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.31 E-value=0.0023 Score=45.58 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 426
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.31 E-value=0.0024 Score=44.92 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.+++.|++|+|||+|++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998874
No 427
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.31 E-value=0.0025 Score=47.07 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.3
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
..-.+++.|++|+|||+|++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4456999999999999999998753
No 428
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.31 E-value=0.0024 Score=42.58 Aligned_cols=19 Identities=32% Similarity=0.770 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 028305 15 VIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~ 33 (210)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999875
No 429
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.30 E-value=0.0025 Score=47.40 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..-.+++.|++|+|||+|++.+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 356799999999999999999875
No 430
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.29 E-value=0.0027 Score=46.18 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..-.|++.|++|+|||+|++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999875
No 431
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.28 E-value=0.0027 Score=45.49 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=19.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~ 33 (210)
..+++.|+|+|||||||+..+|.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 46789999999999999998875
No 432
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.26 E-value=0.003 Score=47.19 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.4
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~ 33 (210)
.....++|.|++|+|||++++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 445679999999999999998665
No 433
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.22 E-value=0.0026 Score=46.95 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998874
No 434
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.21 E-value=0.0027 Score=47.48 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
..-.|++.|++|+|||+|++.+...
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3456999999999999999998853
No 435
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.21 E-value=0.0027 Score=47.93 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.-.+++.|++|+|||+|++.+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999988753
No 436
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.21 E-value=0.0029 Score=45.47 Aligned_cols=26 Identities=12% Similarity=0.293 Sum_probs=21.6
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
......|+|+|++||||||+.+.|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988764
No 437
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.19 E-value=0.0028 Score=50.48 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.++|+|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998763
No 438
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.16 E-value=0.0045 Score=46.25 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.2
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
+.-.++++|++|+|||++++.+...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHH
Confidence 3457999999999999999988754
No 439
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.16 E-value=0.0032 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
+++++|+.|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999888653
No 440
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.15 E-value=0.0032 Score=51.04 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|||||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988643
No 441
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.13 E-value=0.0036 Score=43.74 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
..|+|+|++|+|||+|...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999854
No 442
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.12 E-value=0.0033 Score=45.25 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999887763
No 443
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.11 E-value=0.0031 Score=51.68 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999988754
No 444
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.11 E-value=0.003 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
-++++|+.|||||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999988643
No 445
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.07 E-value=0.0024 Score=42.19 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...|++.|++|+|||++.+.+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCcEEEECCCCccHHHHHHHHHH
Confidence 34699999999999999988764
No 446
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.05 E-value=0.0044 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.456 Sum_probs=21.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.+.-|+++|++||||||+.++|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999874
No 447
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.05 E-value=0.0041 Score=43.51 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 448
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.0041 Score=48.91 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.6
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
..+-.|++.||||+|||.|++++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 45678999999999999999998853
No 449
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.04 E-value=0.003 Score=46.23 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.2
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.....|+|.|.+||||||+++.|..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998764
No 450
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.0036 Score=51.47 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|+|||||++.+.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999988643
No 451
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.02 E-value=0.0036 Score=51.26 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988754
No 452
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.02 E-value=0.0037 Score=47.83 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-+.|+|++|+|||||++.+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998864
No 453
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.02 E-value=0.0038 Score=46.61 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=19.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~ 33 (210)
.-.|+++|++|+||||++..|.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999998875
No 454
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.02 E-value=0.004 Score=46.41 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=20.8
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
....+++.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998874
No 455
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.01 E-value=0.0037 Score=47.97 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.1
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
..-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3447899999999999999998753
No 456
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.00 E-value=0.0038 Score=47.43 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
+++|.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988754
No 457
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.00 E-value=0.0046 Score=47.18 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=20.8
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHh
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~ 33 (210)
.....+|+++|++|+||||+.+.|.
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHH
Confidence 3445689999999999999998665
No 458
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0043 Score=48.70 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.1
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++-.|++.||||+|||+|++++.+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34557999999999999999998753
No 459
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.95 E-value=0.0047 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++|.|++|+|||+|++.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999987543
No 460
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.95 E-value=0.0047 Score=46.67 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.5
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
+.-.|++.|+||+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3457999999999999999998854
No 461
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.95 E-value=0.0059 Score=45.70 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
+.-|+|+||+|||||+|...|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 34688999999999999999873
No 462
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.94 E-value=0.0052 Score=44.26 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
...|++.|..||||||+++.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
No 463
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.94 E-value=0.0033 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988754
No 464
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.0049 Score=48.51 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.6
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++-.|++.||||+|||+|++++.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45678999999999999999998853
No 465
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.93 E-value=0.0035 Score=51.50 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999988753
No 466
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.93 E-value=0.0049 Score=46.54 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.6
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
..-.|++.|+||+|||+|++.+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999998753
No 467
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.92 E-value=0.003 Score=51.70 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999877753
No 468
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.91 E-value=0.0079 Score=45.10 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.0
Q ss_pred ceEEEEEEcCCCCcHHHHHHHHh
Q 028305 11 NLLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 11 ~~~~i~v~G~~~~GKSsli~~l~ 33 (210)
..--|+++|++|+||||++..|.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 45578999999999999998875
No 469
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.90 E-value=0.0051 Score=46.40 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998863
No 470
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.89 E-value=0.0046 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999988643
No 471
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.89 E-value=0.0047 Score=47.53 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 028305 15 VIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~ 33 (210)
.+|+|+.|||||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5599999999999999876
No 472
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.89 E-value=0.0048 Score=46.86 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999999998863
No 473
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.88 E-value=0.0051 Score=49.87 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++|+|+.|||||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998654
No 474
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.87 E-value=0.0066 Score=43.32 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=21.9
Q ss_pred cccccceEEEEEEcCCCCcHHHHHHHHhh
Q 028305 6 NMKRRNLLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 6 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
++......-|+|.|.+||||||+++.|..
T Consensus 15 ~~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 15 QTQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp ----CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455677899999999999999998763
No 475
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.86 E-value=0.0045 Score=50.13 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++++|+.|||||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988654
No 476
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.85 E-value=0.0057 Score=45.92 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998874
No 477
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.82 E-value=0.0055 Score=50.39 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCc
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.++|+|+.|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988654
No 478
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.82 E-value=0.0058 Score=42.00 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (210)
++|+|.++||||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999854
No 479
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.82 E-value=0.0027 Score=47.31 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=17.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.+-|+|.|+.||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998864
No 480
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.79 E-value=0.0054 Score=46.61 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988753
No 481
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.78 E-value=0.0041 Score=51.00 Aligned_cols=22 Identities=45% Similarity=0.611 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999987753
No 482
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.78 E-value=0.0063 Score=45.63 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
-|+|+||+|||||+|...|..
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 588999999999999999874
No 483
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.0058 Score=47.47 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.2
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.++-.|++.||||+|||.|.+++.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 44567999999999999999998753
No 484
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.75 E-value=0.005 Score=47.33 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=21.6
Q ss_pred cceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 10 RNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 10 ~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
...-.++|.|++|+|||+|++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34457999999999999999988743
No 485
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.75 E-value=0.0061 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
-.++|.|+||+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988743
No 486
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.74 E-value=0.0026 Score=46.60 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028305 14 KVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~ 34 (210)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999875
No 487
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.70 E-value=0.0061 Score=48.55 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.-+++++|+||+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999987643
No 488
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.005 Score=46.38 Aligned_cols=27 Identities=11% Similarity=0.039 Sum_probs=22.6
Q ss_pred ccceEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 9 RRNLLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 9 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
....-.+++.|+||+|||++++.+...
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345668899999999999999988743
No 489
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.69 E-value=0.007 Score=45.88 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.-|+|+|++|||||+|...|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 490
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.67 E-value=0.092 Score=39.38 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (210)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999998743
No 491
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.0063 Score=50.03 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhCcC
Q 028305 15 VIVLGDSGVGKTSLMNQYVYNKF 37 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~~~~~ 37 (210)
++++|+.|+|||||++.+.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999886543
No 492
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.66 E-value=0.0066 Score=46.53 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.-.|+|.|++|+|||+|++.+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999998753
No 493
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.66 E-value=0.0063 Score=48.08 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
.-.+++.|++|+|||+|++.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998874
No 494
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.66 E-value=0.0053 Score=43.40 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~~ 34 (210)
++.|++.|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988764
No 495
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.64 E-value=0.0074 Score=42.76 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHh
Q 028305 12 LLKVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 12 ~~~i~v~G~~~~GKSsli~~l~ 33 (210)
..-|+|.|++||||||+++.|.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999999886
No 496
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.63 E-value=0.0066 Score=48.69 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028305 14 KVIVLGDSGVGKTSLMNQYVYN 35 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~~~ 35 (210)
.|+++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998753
No 497
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.61 E-value=0.0066 Score=47.27 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028305 14 KVIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 14 ~i~v~G~~~~GKSsli~~l~ 33 (210)
-++|+|++|+|||||++.|.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999876
No 498
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.60 E-value=0.0093 Score=40.64 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCc
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVYNK 36 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~~~ 36 (210)
.-|++.|++|+||||+.-.|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 458999999999999999998643
No 499
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.59 E-value=0.0065 Score=49.13 Aligned_cols=19 Identities=42% Similarity=0.651 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 028305 15 VIVLGDSGVGKTSLMNQYV 33 (210)
Q Consensus 15 i~v~G~~~~GKSsli~~l~ 33 (210)
++|+|++|||||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 500
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.58 E-value=0.0073 Score=48.11 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028305 13 LKVIVLGDSGVGKTSLMNQYVY 34 (210)
Q Consensus 13 ~~i~v~G~~~~GKSsli~~l~~ 34 (210)
-.|+++|+||+|||+|++.+.+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999875
Done!