BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028306
         (210 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P40761|YUXK_BACSU Uncharacterized protein YuxK OS=Bacillus subtilis (strain 168)
           GN=yuxK PE=3 SV=1
          Length = 137

 Score =  104 bits (259), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 80/132 (60%), Gaps = 7/132 (5%)

Query: 72  VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGL--DREDVLRRFLFV 129
           V+++DGVC+LC+G V+++I+ D    I F  LQS+  +  L+  GL  DR D    F+F+
Sbjct: 10  VLLFDGVCNLCNGAVQFIIKRDPDGLISFTSLQSETGQSLLKKSGLPTDRFD---SFVFI 66

Query: 130 EGPGLYHQASTAALKVLSHLPLPYSALSSLLIIPRPLRDAVYDYIAKQRYHWFGKSEDCL 189
           E  G  +  STAA+KV  HL  P+        +P+P+RD VY +IAK RY WFGK  +C+
Sbjct: 67  ED-GQVYTKSTAAIKVFRHLRGPWRLFVLFFAVPKPVRDMVYSFIAKNRYKWFGKKNECM 125

Query: 190 VLKEKELLERFI 201
            L    + +RF+
Sbjct: 126 -LPSPSIKKRFL 136


>sp|Q9SSR1|Y1259_ARATH DCC family protein At1g52590, chloroplastic OS=Arabidopsis thaliana
           GN=At1g52590 PE=1 SV=1
          Length = 172

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 71/118 (60%), Gaps = 3/118 (2%)

Query: 72  VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131
           ++++DGVC+LC+GGVK+V   D+ R I+F  LQS+A +  L   G   +D+    + VE 
Sbjct: 55  IMLFDGVCNLCNGGVKFVRDHDRNRSIRFEALQSEAGKKLLLRSGRAPDDI-SSVVLVEN 113

Query: 132 PGLYHQASTAALKVLSHLPLPYSALSSLL-IIPRPLRDAVYDYIAKQRYHWFGKSEDC 188
              Y + S A LK++ ++ LP+  L+  L   P  +RD +Y+ +A  RY  FG+S+ C
Sbjct: 114 DRSYIK-SEAVLKIMKYIDLPFPQLAFFLQFAPLFVRDFLYENVANNRYAMFGRSDSC 170


>sp|P77495|PRPE_ECOLI Propionate--CoA ligase OS=Escherichia coli (strain K12) GN=prpE
           PE=3 SV=1
          Length = 628

 Score = 31.2 bits (69), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 14/85 (16%)

Query: 12  AYAAPLSSSLKTLFPSPADVVPGVAADVADVTGADDLVYTEPPVSSTVKPAMEPSLLQPG 71
            YA  L++S+ T+F   A  V   A+D+  V G   +VY              P L    
Sbjct: 256 GYAVALATSMDTIFGGKAGSVFFCASDIGWVVGHSYIVYA-------------PLLAGMA 302

Query: 72  VVIYDGVCHLCHGGVKWVIRADKYR 96
            ++Y+G+      GV W I  +KY+
Sbjct: 303 TIVYEGLPTWPDCGVWWTI-VEKYQ 326


>sp|Q68FU5|CI085_RAT Uncharacterized protein C9orf85 homolog OS=Rattus norvegicus PE=2
           SV=1
          Length = 155

 Score = 31.2 bits (69), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 71  GVVIYDGVCHLCHGGVKWVIRADKYR---KIKFC--CLQSQAAEPYLRLC 115
              ++DGVC  C   ++W ++  KY+   K K C  CLQ    + Y  +C
Sbjct: 37  NAKLHDGVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMC 86


>sp|Q9CQ90|CI085_MOUSE Uncharacterized protein C9orf85 homolog OS=Mus musculus PE=2 SV=1
          Length = 155

 Score = 30.8 bits (68), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 74  IYDGVCHLCHGGVKWVIRADKYR---KIKFC--CLQSQAAEPYLRLC 115
           ++DGVC  C   ++W ++  KY+   K K C  CLQ    + Y  +C
Sbjct: 40  LHDGVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMC 86


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.139    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,062,348
Number of Sequences: 539616
Number of extensions: 3284325
Number of successful extensions: 7972
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7965
Number of HSP's gapped (non-prelim): 11
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)