Query 028306
Match_columns 210
No_of_seqs 141 out of 889
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 09:28:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3011 Predicted thiol-disulf 100.0 1.7E-33 3.8E-38 224.6 12.6 129 70-201 9-137 (137)
2 PF04134 DUF393: Protein of un 100.0 6.8E-30 1.5E-34 195.8 12.1 111 73-184 1-114 (114)
3 TIGR02180 GRX_euk Glutaredoxin 94.7 0.11 2.5E-06 36.3 5.9 70 72-147 2-76 (84)
4 cd02066 GRX_family Glutaredoxi 94.0 0.55 1.2E-05 31.0 7.9 67 70-145 1-70 (72)
5 cd03419 GRX_GRXh_1_2_like Glut 93.6 0.24 5.1E-06 34.6 5.6 70 70-147 1-75 (82)
6 PF13728 TraF: F plasmid trans 93.3 0.21 4.5E-06 42.9 5.8 61 70-133 123-194 (215)
7 TIGR02190 GlrX-dom Glutaredoxi 92.7 1.1 2.4E-05 31.8 8.0 72 67-146 6-78 (79)
8 cd02966 TlpA_like_family TlpA- 91.9 0.48 1.1E-05 33.7 5.4 38 70-107 22-62 (116)
9 COG3019 Predicted metal-bindin 91.8 1.2 2.6E-05 36.3 8.0 78 67-150 24-104 (149)
10 PRK10638 glutaredoxin 3; Provi 91.7 1.2 2.6E-05 31.7 7.3 71 69-147 2-74 (83)
11 PRK11200 grxA glutaredoxin 1; 91.1 2.3 4.9E-05 30.4 8.2 74 70-147 2-80 (85)
12 PF13098 Thioredoxin_2: Thiore 90.8 0.33 7.3E-06 35.8 3.7 22 70-91 8-29 (112)
13 cd03027 GRX_DEP Glutaredoxin ( 90.7 1.2 2.5E-05 30.9 6.2 68 70-145 2-71 (73)
14 TIGR02739 TraF type-F conjugat 90.6 0.58 1.3E-05 41.4 5.6 61 69-132 152-223 (256)
15 cd03418 GRX_GRXb_1_3_like Glut 89.3 2 4.4E-05 29.4 6.5 71 70-147 1-73 (75)
16 cd02982 PDI_b'_family Protein 89.3 1.2 2.5E-05 32.3 5.5 66 70-136 15-83 (103)
17 cd02973 TRX_GRX_like Thioredox 88.4 1.4 3.1E-05 29.6 5.1 49 70-118 2-51 (67)
18 PRK13703 conjugal pilus assemb 88.3 0.36 7.7E-06 42.6 2.5 36 69-104 145-180 (248)
19 TIGR02183 GRXA Glutaredoxin, G 88.2 5.2 0.00011 28.8 8.3 73 72-148 3-80 (86)
20 cd03029 GRX_hybridPRX5 Glutare 87.6 5 0.00011 27.5 7.6 69 70-146 2-71 (72)
21 cd00570 GST_N_family Glutathio 87.4 4.4 9.6E-05 25.9 6.9 68 72-145 2-69 (71)
22 cd03040 GST_N_mPGES2 GST_N fam 86.8 3.4 7.4E-05 28.5 6.4 69 70-147 1-73 (77)
23 cd02961 PDI_a_family Protein D 86.0 2.9 6.4E-05 29.0 5.8 62 69-133 17-82 (101)
24 cd03060 GST_N_Omega_like GST_N 85.8 3.7 8.1E-05 28.0 6.1 65 72-144 2-68 (71)
25 cd02949 TRX_NTR TRX domain, no 85.3 4.8 0.0001 29.1 6.9 62 71-136 17-80 (97)
26 TIGR00411 redox_disulf_1 small 85.1 1.8 4E-05 29.8 4.3 48 71-118 3-52 (82)
27 TIGR02740 TraF-like TraF-like 84.9 2.5 5.4E-05 37.4 6.1 63 70-135 169-243 (271)
28 cd03041 GST_N_2GST_N GST_N fam 84.7 5.6 0.00012 27.7 6.7 69 71-147 2-74 (77)
29 PHA03050 glutaredoxin; Provisi 83.9 4.9 0.00011 30.7 6.5 72 68-145 12-89 (108)
30 cd03020 DsbA_DsbC_DsbG DsbA fa 83.9 1.7 3.8E-05 35.9 4.4 36 68-103 78-113 (197)
31 TIGR01126 pdi_dom protein disu 83.9 5.3 0.00012 28.3 6.5 61 70-133 16-80 (102)
32 PRK11657 dsbG disulfide isomer 83.3 1.6 3.4E-05 38.2 4.0 34 70-103 120-155 (251)
33 PTZ00051 thioredoxin; Provisio 83.2 2.3 5E-05 30.4 4.3 62 71-136 22-84 (98)
34 cd03059 GST_N_SspA GST_N famil 83.2 6.3 0.00014 26.5 6.3 69 71-147 1-70 (73)
35 TIGR02181 GRX_bact Glutaredoxi 83.0 6.8 0.00015 27.2 6.6 68 72-147 2-71 (79)
36 TIGR02200 GlrX_actino Glutared 82.9 2.7 5.9E-05 28.5 4.4 35 70-106 1-35 (77)
37 cd03028 GRX_PICOT_like Glutare 82.9 5.5 0.00012 28.9 6.3 61 78-146 22-84 (90)
38 cd03023 DsbA_Com1_like DsbA fa 82.8 1.8 4E-05 33.1 3.8 39 65-103 3-44 (154)
39 PF00085 Thioredoxin: Thioredo 82.8 3.5 7.6E-05 29.2 5.1 62 70-135 20-83 (103)
40 TIGR00365 monothiol glutaredox 81.8 6.7 0.00014 29.1 6.4 68 70-147 12-89 (97)
41 PRK10877 protein disulfide iso 81.4 2.1 4.5E-05 37.0 4.1 34 68-101 108-142 (232)
42 TIGR02189 GlrX-like_plant Glut 81.2 7.1 0.00015 29.1 6.4 72 69-145 8-81 (99)
43 cd03045 GST_N_Delta_Epsilon GS 80.7 12 0.00026 25.2 7.0 70 71-146 1-72 (74)
44 TIGR02738 TrbB type-F conjugat 80.4 1.9 4.1E-05 35.0 3.3 35 68-102 51-85 (153)
45 cd03056 GST_N_4 GST_N family, 80.0 11 0.00024 25.2 6.6 67 71-145 1-71 (73)
46 KOG1422 Intracellular Cl- chan 79.6 4.8 0.0001 34.9 5.5 71 75-152 17-88 (221)
47 cd03002 PDI_a_MPD1_like PDI fa 79.4 5.8 0.00013 28.8 5.4 61 70-133 21-85 (109)
48 cd03010 TlpA_like_DsbE TlpA-li 79.4 5.5 0.00012 30.0 5.4 34 71-104 29-62 (127)
49 cd03011 TlpA_like_ScsD_MtbDsbE 79.3 8.8 0.00019 28.5 6.5 25 70-94 23-47 (123)
50 cd03061 GST_N_CLIC GST_N famil 79.2 5.4 0.00012 29.8 5.1 65 77-149 20-85 (91)
51 PRK10824 glutaredoxin-4; Provi 79.1 13 0.00028 29.0 7.4 60 78-147 29-92 (115)
52 cd02947 TRX_family TRX family; 78.6 4.1 8.9E-05 27.5 4.1 60 71-134 14-74 (93)
53 cd03004 PDI_a_ERdj5_C PDIa fam 78.5 3.6 7.9E-05 29.9 4.0 59 70-131 22-82 (104)
54 cd02972 DsbA_family DsbA famil 78.2 3.5 7.5E-05 28.5 3.7 22 71-92 1-22 (98)
55 TIGR01068 thioredoxin thioredo 78.0 4.6 9.9E-05 28.4 4.3 61 70-134 17-79 (101)
56 cd03037 GST_N_GRX2 GST_N famil 77.8 19 0.0004 24.3 8.1 67 72-146 2-69 (71)
57 PRK10329 glutaredoxin-like pro 77.5 10 0.00023 27.2 6.1 35 70-106 2-36 (81)
58 cd03055 GST_N_Omega GST_N fami 77.4 19 0.00041 25.8 7.5 70 69-146 17-88 (89)
59 cd03051 GST_N_GTT2_like GST_N 77.4 16 0.00034 24.3 6.7 68 72-145 2-72 (74)
60 PF00578 AhpC-TSA: AhpC/TSA fa 77.4 6 0.00013 29.2 5.0 38 70-107 28-69 (124)
61 cd02956 ybbN ybbN protein fami 77.3 13 0.00029 26.3 6.7 61 71-135 16-78 (96)
62 cd02998 PDI_a_ERp38 PDIa famil 77.0 5.9 0.00013 28.2 4.7 60 70-132 21-85 (105)
63 TIGR02196 GlrX_YruB Glutaredox 76.9 5.4 0.00012 26.3 4.3 34 71-106 2-35 (74)
64 PRK03147 thiol-disulfide oxido 76.8 9.2 0.0002 30.2 6.2 36 70-105 64-102 (173)
65 cd02975 PfPDO_like_N Pyrococcu 76.7 16 0.00035 27.5 7.3 59 70-131 24-84 (113)
66 cd02950 TxlA TRX-like protein 76.4 13 0.00029 29.3 7.0 63 71-136 24-90 (142)
67 cd01659 TRX_superfamily Thiore 76.1 6.7 0.00014 23.7 4.3 36 71-106 1-39 (69)
68 cd03036 ArsC_like Arsenate Red 75.3 7.3 0.00016 29.6 5.0 34 71-106 1-34 (111)
69 cd02951 SoxW SoxW family; SoxW 74.9 9 0.0002 28.9 5.5 64 70-136 17-99 (125)
70 cd03001 PDI_a_P5 PDIa family, 74.7 4.8 0.0001 28.8 3.7 59 70-131 21-81 (103)
71 cd03003 PDI_a_ERdj5_N PDIa fam 74.4 6.2 0.00013 28.6 4.3 61 70-134 21-83 (101)
72 cd02984 TRX_PICOT TRX domain, 73.6 17 0.00036 25.7 6.4 61 71-135 18-80 (97)
73 PF13417 GST_N_3: Glutathione 73.6 22 0.00047 24.4 6.8 69 73-148 1-69 (75)
74 PF13409 GST_N_2: Glutathione 73.3 10 0.00022 26.0 4.9 63 79-147 2-68 (70)
75 cd03026 AhpF_NTD_C TRX-GRX-lik 73.3 6 0.00013 29.0 4.0 49 70-118 15-64 (89)
76 cd02996 PDI_a_ERp44 PDIa famil 73.1 7.3 0.00016 28.6 4.5 60 71-134 22-89 (108)
77 cd02989 Phd_like_TxnDC9 Phosdu 72.6 19 0.00042 27.1 6.8 64 70-137 25-89 (113)
78 cd02967 mauD Methylamine utili 72.3 7.3 0.00016 28.5 4.3 33 71-103 25-59 (114)
79 cd03019 DsbA_DsbA DsbA family, 71.7 7 0.00015 30.9 4.4 39 66-104 14-56 (178)
80 cd02997 PDI_a_PDIR PDIa family 70.6 5.8 0.00013 28.3 3.3 60 71-134 21-86 (104)
81 cd03049 GST_N_3 GST_N family, 68.6 32 0.00069 23.2 6.7 68 72-145 2-71 (73)
82 TIGR02187 GlrX_arch Glutaredox 68.5 27 0.00059 29.2 7.5 65 71-139 137-202 (215)
83 PHA02125 thioredoxin-like prot 67.7 15 0.00032 25.6 4.8 44 71-118 2-45 (75)
84 TIGR03759 conj_TIGR03759 integ 66.6 24 0.00051 30.3 6.6 67 65-131 106-174 (200)
85 PRK13728 conjugal transfer pro 66.1 5.6 0.00012 33.5 2.7 35 70-104 72-106 (181)
86 cd02977 ArsC_family Arsenate R 65.5 18 0.00038 26.8 5.2 33 71-105 1-33 (105)
87 cd03009 TryX_like_TryX_NRX Try 65.1 39 0.00084 25.4 7.2 21 71-91 22-42 (131)
88 cd02957 Phd_like Phosducin (Ph 64.7 30 0.00064 25.8 6.3 62 71-137 28-90 (113)
89 cd02969 PRX_like1 Peroxiredoxi 64.1 32 0.0007 27.3 6.8 37 70-106 28-67 (171)
90 PF01323 DSBA: DSBA-like thior 63.3 4.1 8.8E-05 32.7 1.4 34 71-104 2-38 (193)
91 TIGR01617 arsC_related transcr 63.2 12 0.00026 28.5 3.9 33 72-106 2-34 (117)
92 PRK10996 thioredoxin 2; Provis 63.1 40 0.00088 26.3 7.1 62 71-136 56-119 (139)
93 cd03052 GST_N_GDAP1 GST_N fami 62.9 43 0.00094 23.1 6.5 70 72-146 2-72 (73)
94 cd03044 GST_N_EF1Bgamma GST_N 62.3 37 0.0008 23.2 6.0 69 72-148 2-74 (75)
95 PF13462 Thioredoxin_4: Thiore 61.8 7.4 0.00016 30.2 2.6 28 63-90 8-35 (162)
96 cd03053 GST_N_Phi GST_N family 61.5 47 0.001 22.4 6.6 69 71-147 2-74 (76)
97 cd03032 ArsC_Spx Arsenate Redu 61.3 15 0.00033 27.9 4.2 34 71-106 2-35 (115)
98 PRK01655 spxA transcriptional 60.4 14 0.0003 29.0 3.9 34 71-106 2-35 (131)
99 PTZ00062 glutaredoxin; Provisi 59.0 30 0.00064 29.5 6.0 70 70-147 114-190 (204)
100 PRK12559 transcriptional regul 58.5 31 0.00067 27.2 5.6 32 71-104 2-33 (131)
101 PRK10026 arsenate reductase; P 58.4 23 0.0005 28.5 5.0 52 69-122 2-58 (141)
102 PRK09381 trxA thioredoxin; Pro 58.3 21 0.00047 26.0 4.5 63 70-136 24-88 (109)
103 COG4545 Glutaredoxin-related p 57.9 16 0.00035 26.9 3.5 36 69-106 2-37 (85)
104 cd03005 PDI_a_ERp46 PDIa famil 56.7 18 0.00039 25.7 3.7 61 70-134 19-84 (102)
105 cd03076 GST_N_Pi GST_N family, 55.0 57 0.0012 22.2 6.0 69 71-146 2-70 (73)
106 cd03054 GST_N_Metaxin GST_N fa 54.9 32 0.0007 23.2 4.7 56 78-147 15-70 (72)
107 cd02963 TRX_DnaJ TRX domain, D 54.8 38 0.00082 25.2 5.4 63 70-136 27-92 (111)
108 PTZ00056 glutathione peroxidas 54.0 40 0.00086 28.2 5.9 34 71-104 43-79 (199)
109 TIGR02182 GRXB Glutaredoxin, G 53.8 72 0.0016 26.4 7.5 70 72-149 1-71 (209)
110 TIGR00014 arsC arsenate reduct 53.8 31 0.00067 26.3 4.8 33 71-105 1-33 (114)
111 TIGR02194 GlrX_NrdH Glutaredox 53.7 27 0.00058 23.9 4.1 33 72-106 2-34 (72)
112 PRK12759 bifunctional gluaredo 52.7 36 0.00078 31.9 5.9 74 69-144 2-79 (410)
113 cd03034 ArsC_ArsC Arsenate Red 52.2 32 0.00069 26.1 4.6 33 71-105 1-33 (112)
114 cd02999 PDI_a_ERp44_like PDIa 52.2 22 0.00047 26.2 3.6 58 71-131 22-81 (100)
115 cd02995 PDI_a_PDI_a'_C PDIa fa 51.5 15 0.00033 26.0 2.6 58 70-131 21-82 (104)
116 cd03000 PDI_a_TMX3 PDIa family 51.1 33 0.00071 24.9 4.4 59 70-131 18-81 (104)
117 PRK13344 spxA transcriptional 50.5 22 0.00047 28.1 3.5 33 71-105 2-34 (132)
118 TIGR00862 O-ClC intracellular 50.4 38 0.00081 29.4 5.3 66 77-149 17-82 (236)
119 PLN02817 glutathione dehydroge 50.4 41 0.00088 29.6 5.6 67 76-149 70-136 (265)
120 PF09816 EAF: RNA polymerase I 49.8 27 0.00058 26.6 3.9 53 26-78 30-87 (109)
121 cd02948 TRX_NDPK TRX domain, T 49.8 70 0.0015 23.2 6.1 60 71-135 21-83 (102)
122 PF05768 DUF836: Glutaredoxin- 48.7 66 0.0014 22.7 5.6 46 71-118 2-49 (81)
123 PTZ00102 disulphide isomerase; 48.4 61 0.0013 29.9 6.8 77 70-149 52-137 (477)
124 cd03022 DsbA_HCCA_Iso DsbA fam 47.9 22 0.00047 28.4 3.3 34 72-105 2-37 (192)
125 cd02953 DsbDgamma DsbD gamma f 47.7 44 0.00094 24.1 4.6 61 71-135 15-86 (104)
126 PTZ00443 Thioredoxin domain-co 47.5 97 0.0021 26.7 7.4 63 70-136 55-119 (224)
127 cd03031 GRX_GRX_like Glutaredo 47.4 66 0.0014 26.0 6.0 66 78-147 15-82 (147)
128 cd03039 GST_N_Sigma_like GST_N 47.1 84 0.0018 21.0 5.8 70 71-146 1-70 (72)
129 cd02992 PDI_a_QSOX PDIa family 46.7 38 0.00082 25.5 4.3 59 70-131 22-87 (114)
130 cd02994 PDI_a_TMX PDIa family, 45.7 52 0.0011 23.4 4.8 62 70-135 19-83 (101)
131 PRK10387 glutaredoxin 2; Provi 45.5 1.6E+02 0.0034 23.8 8.1 70 72-149 2-72 (210)
132 PLN02378 glutathione S-transfe 45.4 54 0.0012 27.2 5.4 66 76-148 17-82 (213)
133 cd03035 ArsC_Yffb Arsenate Red 45.1 35 0.00076 25.7 3.8 33 71-105 1-33 (105)
134 PF06200 tify: tify domain; I 44.5 13 0.00027 23.4 1.0 18 66-83 3-20 (36)
135 PF13905 Thioredoxin_8: Thiore 43.5 36 0.00079 23.9 3.6 37 71-107 5-45 (95)
136 cd02970 PRX_like2 Peroxiredoxi 43.5 29 0.00063 26.3 3.3 37 72-108 28-68 (149)
137 PHA02540 61 DNA primase; Provi 43.1 60 0.0013 30.0 5.7 71 69-145 257-331 (337)
138 cd02976 NrdH NrdH-redoxin (Nrd 43.0 29 0.00064 22.6 2.8 33 71-105 2-34 (73)
139 cd02987 Phd_like_Phd Phosducin 42.9 1E+02 0.0022 25.2 6.6 62 71-137 87-149 (175)
140 TIGR02187 GlrX_arch Glutaredox 42.3 75 0.0016 26.5 5.8 59 70-131 22-86 (215)
141 PF08534 Redoxin: Redoxin; In 42.2 25 0.00055 26.9 2.8 33 71-103 32-68 (146)
142 PRK15412 thiol:disulfide inter 41.6 36 0.00078 27.8 3.7 33 71-104 72-104 (185)
143 COG1393 ArsC Arsenate reductas 41.6 58 0.0012 25.3 4.6 32 71-104 3-34 (117)
144 PF00462 Glutaredoxin: Glutare 41.4 56 0.0012 21.3 4.0 33 72-106 2-34 (60)
145 TIGR01295 PedC_BrcD bacterioci 41.1 74 0.0016 24.4 5.2 35 71-105 27-63 (122)
146 PRK11752 putative S-transferas 40.4 2.4E+02 0.0052 24.3 8.9 88 54-148 28-127 (264)
147 cd03080 GST_N_Metaxin_like GST 40.2 1.2E+02 0.0025 20.6 6.1 56 78-147 16-71 (75)
148 cd03038 GST_N_etherase_LigE GS 40.0 1.3E+02 0.0027 20.9 6.1 67 76-147 13-80 (84)
149 TIGR02661 MauD methylamine deh 38.9 39 0.00084 27.8 3.5 32 71-102 78-111 (189)
150 cd03021 DsbA_GSTK DsbA family, 38.8 41 0.00089 27.9 3.7 35 70-104 2-38 (209)
151 PRK09481 sspA stringent starva 38.6 89 0.0019 25.7 5.7 71 71-149 11-82 (211)
152 PRK15113 glutathione S-transfe 38.5 1.8E+02 0.0038 23.9 7.5 74 70-149 5-82 (214)
153 cd00340 GSH_Peroxidase Glutath 38.1 34 0.00074 26.8 2.9 34 71-105 26-62 (152)
154 cd02971 PRX_family Peroxiredox 38.0 50 0.0011 24.8 3.8 37 71-107 26-66 (140)
155 COG1651 DsbG Protein-disulfide 36.9 57 0.0012 27.5 4.3 24 68-91 85-108 (244)
156 cd03024 DsbA_FrnE DsbA family, 36.2 42 0.00091 27.1 3.3 32 72-103 2-39 (201)
157 TIGR00385 dsbE periplasmic pro 36.1 64 0.0014 25.9 4.3 32 71-103 67-98 (173)
158 cd02954 DIM1 Dim1 family; Dim1 35.6 78 0.0017 24.5 4.5 62 71-136 18-81 (114)
159 cd02962 TMX2 TMX2 family; comp 35.4 62 0.0013 26.1 4.1 64 71-136 51-121 (152)
160 cd02968 SCO SCO (an acronym fo 35.4 45 0.00097 25.2 3.2 35 71-105 26-67 (142)
161 PF03960 ArsC: ArsC family; I 34.8 80 0.0017 23.5 4.4 30 74-105 1-30 (110)
162 PF04423 Rad50_zn_hook: Rad50 34.5 10 0.00023 25.1 -0.5 11 76-86 20-30 (54)
163 cd03012 TlpA_like_DipZ_like Tl 33.9 46 0.00099 25.0 3.0 35 71-105 27-64 (126)
164 KOG4172 Predicted E3 ubiquitin 33.1 32 0.00069 23.9 1.7 16 76-91 43-58 (62)
165 PF13192 Thioredoxin_3: Thiore 32.4 59 0.0013 22.6 3.1 59 71-138 3-63 (76)
166 cd03058 GST_N_Tau GST_N family 32.3 1.6E+02 0.0034 19.7 6.3 70 72-147 2-71 (74)
167 cd03033 ArsC_15kD Arsenate Red 31.1 79 0.0017 24.2 3.9 33 71-105 2-34 (113)
168 KOG0191 Thioredoxin/protein di 30.3 75 0.0016 29.0 4.2 60 69-131 49-110 (383)
169 cd02985 TRX_CDSP32 TRX family, 30.3 1.2E+02 0.0025 22.1 4.6 61 71-135 19-83 (103)
170 TIGR00412 redox_disulf_2 small 30.1 1.2E+02 0.0026 21.0 4.4 35 72-106 3-39 (76)
171 cd02993 PDI_a_APS_reductase PD 30.0 1.8E+02 0.0039 21.2 5.6 60 70-132 24-88 (109)
172 cd02988 Phd_like_VIAF Phosduci 29.3 1.3E+02 0.0029 25.1 5.2 59 71-136 106-165 (192)
173 cd03006 PDI_a_EFP1_N PDIa fami 28.6 1.3E+02 0.0028 22.9 4.7 65 71-139 33-103 (113)
174 COG0625 Gst Glutathione S-tran 28.3 2.5E+02 0.0054 22.8 6.7 74 71-150 1-76 (211)
175 COG2999 GrxB Glutaredoxin 2 [P 27.8 36 0.00079 29.1 1.5 13 73-86 4-16 (215)
176 cd03050 GST_N_Theta GST_N fami 26.7 2E+02 0.0044 19.2 6.7 68 72-147 2-73 (76)
177 PLN02412 probable glutathione 26.6 70 0.0015 25.7 3.0 35 71-105 33-70 (167)
178 cd02958 UAS UAS family; UAS is 26.2 2.7E+02 0.0058 20.5 6.4 63 71-136 21-91 (114)
179 cd03018 PRX_AhpE_like Peroxire 26.0 1.3E+02 0.0027 22.9 4.3 36 72-107 33-72 (149)
180 PRK10853 putative reductase; P 24.7 94 0.002 24.0 3.3 33 71-105 2-34 (118)
181 cd02965 HyaE HyaE family; HyaE 24.1 3.4E+02 0.0073 20.9 6.9 67 67-137 26-97 (111)
182 PF05722 Ustilago_mating: Usti 23.7 62 0.0013 28.2 2.3 17 164-180 77-93 (286)
183 cd03042 GST_N_Zeta GST_N famil 23.4 2.2E+02 0.0048 18.6 6.3 69 72-146 2-72 (73)
184 cd03025 DsbA_FrnE_like DsbA fa 23.4 55 0.0012 26.1 1.9 24 70-93 2-25 (193)
185 PRK10954 periplasmic protein d 22.6 67 0.0015 26.7 2.3 18 69-86 39-56 (207)
186 TIGR01616 nitro_assoc nitrogen 22.6 1.3E+02 0.0028 23.6 3.7 34 70-105 2-35 (126)
187 cd02959 ERp19 Endoplasmic reti 22.3 2.4E+02 0.0053 21.2 5.2 65 71-137 23-91 (117)
188 PLN02473 glutathione S-transfe 22.1 4E+02 0.0086 21.5 6.8 71 71-147 3-75 (214)
189 PTZ00102 disulphide isomerase; 21.2 2.4E+02 0.0052 26.0 5.8 61 71-134 379-443 (477)
190 TIGR01130 ER_PDI_fam protein d 20.6 2E+02 0.0042 26.1 5.1 58 71-131 22-84 (462)
No 1
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=224.62 Aligned_cols=129 Identities=45% Similarity=0.831 Sum_probs=119.7
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHHhC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLSHL 149 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~~L 149 (210)
..+|+|||.|++|+.+|+||+++|..++++|.++|++.+.+.++..|++.++. .+++++++ |+.+.|+||++++++.+
T Consensus 9 ~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~-~s~~~~~~-g~~~~~sdA~~~i~~~L 86 (137)
T COG3011 9 DLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDV-DSVLLVEA-GQLLVGSDAAIRILRLL 86 (137)
T ss_pred CEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhh-heeeEecC-CceEeccHHHHHHHHHC
Confidence 46999999999999999999999999999999999999999999999999983 56666654 89999999999999999
Q ss_pred CCchhHHHHHHhccHhHHHHHHHHHHhhccccCCCCCcccCCCchhhhhccC
Q 028306 150 PLPYSALSSLLIIPRPLRDAVYDYIAKQRYHWFGKSEDCLVLKEKELLERFI 201 (210)
Q Consensus 150 p~~w~ll~~L~~lP~~L~d~~Y~~VArnRyrlfG~~~~C~lp~~~~~~~Rfl 201 (210)
|++|+++..+..+|++++|.+|++||+|||+|||+++.|.++ +++.+.||+
T Consensus 87 ~~~Wr~~~~~~~lp~plrD~~Y~~~A~nRyrwfGr~~~~~~~-~~~~~~r~~ 137 (137)
T COG3011 87 PGPWRLLVWLWILPRPLRDRVYDFFADNRYRWFGRKDQCELP-PPRERQRFL 137 (137)
T ss_pred CcceeeeehhhccchHHHHHHHHHHHHhhhhhcCcccccccC-CHHHhhhcC
Confidence 999998888889999999999999999999999999999997 578899985
No 2
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=99.97 E-value=6.8e-30 Score=195.84 Aligned_cols=111 Identities=38% Similarity=0.725 Sum_probs=103.9
Q ss_pred EEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCe-EEEcHHHHHHHHHhCCC
Q 028306 73 VIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL-YHQASTAALKVLSHLPL 151 (210)
Q Consensus 73 V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~-~y~GsdAvl~il~~Lp~ 151 (210)
|+|||+||||++++++++++|..++++|+|+|++.+.++++.+|++.+++++.+|+ .++|+ +|.|++|++++++.++.
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~~~ 79 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRLPG 79 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHcCc
Confidence 69999999999999999999999999999999998888788999999999999999 55576 99999999999999999
Q ss_pred chhHHHHHHhcc--HhHHHHHHHHHHhhccccCCC
Q 028306 152 PYSALSSLLIIP--RPLRDAVYDYIAKQRYHWFGK 184 (210)
Q Consensus 152 ~w~ll~~L~~lP--~~L~d~~Y~~VArnRyrlfG~ 184 (210)
+|+|++.++.+| ++++|++|++||+|||+|+||
T Consensus 80 ~~~~l~~l~~lp~~~~l~~~~Y~~iA~~R~~~~gr 114 (114)
T PF04134_consen 80 PWRWLAWLLRLPGIRPLADRLYRWIARNRYRWFGR 114 (114)
T ss_pred chHHHHHHHHcccHHHHHHHHHHHHHhhHhhhhCc
Confidence 899999998999 579999999999999999996
No 3
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=94.72 E-value=0.11 Score=36.28 Aligned_cols=70 Identities=14% Similarity=0.259 Sum_probs=46.2
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccch-h----HHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHH
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAE-P----YLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVL 146 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~-~----~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il 146 (210)
++|+-.+||.|.+...+|.++...+.+.+..+...... . +.+..|+. .+ -.+++ +|+...|++-+..+.
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~--~v--P~v~i--~g~~igg~~~~~~~~ 75 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQR--TV--PNIFI--NGKFIGGCSDLLALY 75 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCC--CC--CeEEE--CCEEEcCHHHHHHHH
Confidence 68899999999999999998875445788888654221 1 11122321 11 11233 589999999988775
Q ss_pred H
Q 028306 147 S 147 (210)
Q Consensus 147 ~ 147 (210)
.
T Consensus 76 ~ 76 (84)
T TIGR02180 76 K 76 (84)
T ss_pred H
Confidence 4
No 4
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=94.03 E-value=0.55 Score=31.03 Aligned_cols=67 Identities=10% Similarity=0.115 Sum_probs=44.1
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccc-hhHHHh-cCCCHHHhhccE-EEEECCCeEEEcHHHHHHH
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAA-EPYLRL-CGLDREDVLRRF-LFVEGPGLYHQASTAALKV 145 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~-~~~L~~-~gi~~e~~~~~l-~vv~~~G~~y~GsdAvl~i 145 (210)
+.++|.-..||.|.+...+|.... -.+...++..... .+.+.. .|. .++ +++. +|+.+.|++.+..+
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~--i~~~~~di~~~~~~~~~l~~~~~~------~~~P~~~~-~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLG--IEFEEIDILEDGELREELKELSGW------PTVPQIFI-NGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC--CcEEEEECCCCHHHHHHHHHHhCC------CCcCEEEE-CCEEEecHHHHHHh
Confidence 457888899999999999998776 4677788876532 111211 121 233 2333 58999999887665
No 5
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=93.62 E-value=0.24 Score=34.60 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=44.8
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccc-hhH---H-HhcCCCHHHhhccEEEEECCCeEEEcHHHHHH
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAA-EPY---L-RLCGLDREDVLRRFLFVEGPGLYHQASTAALK 144 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~-~~~---L-~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~ 144 (210)
|.++|+-..||.|.....+|.++.. .+.+..+..... .++ + +..|. .++=.+--+|+.+.|++-+..
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~g~------~~~P~v~~~g~~igg~~~~~~ 72 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGV--KPAVVELDQHEDGSEIQDYLQELTGQ------RTVPNVFIGGKFIGGCDDLMA 72 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCC--CcEEEEEeCCCChHHHHHHHHHHhCC------CCCCeEEECCEEEcCHHHHHH
Confidence 4678888899999999999988765 566777665432 111 1 11121 122112225899999998877
Q ss_pred HHH
Q 028306 145 VLS 147 (210)
Q Consensus 145 il~ 147 (210)
+..
T Consensus 73 ~~~ 75 (82)
T cd03419 73 LHK 75 (82)
T ss_pred HHH
Confidence 654
No 6
>PF13728 TraF: F plasmid transfer operon protein
Probab=93.31 E-value=0.21 Score=42.86 Aligned_cols=61 Identities=8% Similarity=0.089 Sum_probs=40.2
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc-----------cchhHHHhcCCCHHHhhccEEEEECCC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-----------AAEPYLRLCGLDREDVLRRFLFVEGPG 133 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~-----------~~~~~L~~~gi~~e~~~~~l~vv~~~G 133 (210)
-+++||+|+|++|....--|+.+...-.+...+++-+ ....+.+..|+.. --++.+++.++
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~---~Pal~Lv~~~~ 194 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKV---TPALFLVNPNT 194 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCc---CCEEEEEECCC
Confidence 4899999999999999999987765445544444332 1122345677742 24777777755
No 7
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.72 E-value=1.1 Score=31.75 Aligned_cols=72 Identities=15% Similarity=0.031 Sum_probs=46.7
Q ss_pred CCCCeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccch-hHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHH
Q 028306 67 LLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAE-PYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKV 145 (210)
Q Consensus 67 ~~~~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~-~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~i 145 (210)
..++.+||.=-.||+|.+..++|..++ -.+..+++...... .+....|. .++=++.-+|+.+.|++.+...
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~g--i~y~~idi~~~~~~~~~~~~~g~------~~vP~i~i~g~~igG~~~l~~~ 77 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKG--YDFEEIPLGNDARGRSLRAVTGA------TTVPQVFIGGKLIGGSDELEAY 77 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcC--CCcEEEECCCChHHHHHHHHHCC------CCcCeEEECCEEEcCHHHHHHH
Confidence 445788999999999999999998654 35666777654222 21111121 2333333368999999987765
Q ss_pred H
Q 028306 146 L 146 (210)
Q Consensus 146 l 146 (210)
+
T Consensus 78 l 78 (79)
T TIGR02190 78 L 78 (79)
T ss_pred h
Confidence 4
No 8
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=91.87 E-value=0.48 Score=33.68 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=27.0
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcC---CCcEEEEeCCCcc
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQA 107 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~---~~~i~f~~iqs~~ 107 (210)
-.+.+|..+|+.|.+....+.+... ...+.++.+....
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~ 62 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD 62 (116)
T ss_pred EEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC
Confidence 3677888899999998877766432 2467777766554
No 9
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=91.83 E-value=1.2 Score=36.29 Aligned_cols=78 Identities=17% Similarity=0.151 Sum_probs=52.1
Q ss_pred CCCCeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEEc---HHHHH
Q 028306 67 LLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQA---STAAL 143 (210)
Q Consensus 67 ~~~~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~G---sdAvl 143 (210)
...+.+++||-.|+=|+.|++.++..+- .+.-.. ......+-+.+||+.+- .+=|-..-+|.+.-| .+||.
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf--~Vk~~~--~~d~~alK~~~gIp~e~--~SCHT~VI~Gy~vEGHVPa~aI~ 97 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGF--EVKVVE--TDDFLALKRRLGIPYEM--QSCHTAVINGYYVEGHVPAEAIA 97 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCc--EEEEee--cCcHHHHHHhcCCChhh--ccccEEEEcCEEEeccCCHHHHH
Confidence 3457899999999999999999974332 333333 22233344568999873 566644335666655 68888
Q ss_pred HHHHhCC
Q 028306 144 KVLSHLP 150 (210)
Q Consensus 144 ~il~~Lp 150 (210)
+++..-|
T Consensus 98 ~ll~~~p 104 (149)
T COG3019 98 RLLAEKP 104 (149)
T ss_pred HHHhCCC
Confidence 8877666
No 10
>PRK10638 glutaredoxin 3; Provisional
Probab=91.73 E-value=1.2 Score=31.69 Aligned_cols=71 Identities=7% Similarity=0.038 Sum_probs=44.8
Q ss_pred CCeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCcc-ch-hHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHH
Q 028306 69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA-AE-PYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVL 146 (210)
Q Consensus 69 ~~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~-~~-~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il 146 (210)
++.++|--..||+|.+...+|..+.. .+..+++.... .. .+.+..|. .++=++.-+|+.+.|++.+..+.
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi--~y~~~dv~~~~~~~~~l~~~~g~------~~vP~i~~~g~~igG~~~~~~~~ 73 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGV--SFQEIPIDGDAAKREEMIKRSGR------TTVPQIFIDAQHIGGCDDLYALD 73 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCC--CcEEEECCCCHHHHHHHHHHhCC------CCcCEEEECCEEEeCHHHHHHHH
Confidence 35677777999999999999987653 56667775442 11 11122221 22333333589999999876664
Q ss_pred H
Q 028306 147 S 147 (210)
Q Consensus 147 ~ 147 (210)
.
T Consensus 74 ~ 74 (83)
T PRK10638 74 A 74 (83)
T ss_pred H
Confidence 3
No 11
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=91.11 E-value=2.3 Score=30.35 Aligned_cols=74 Identities=7% Similarity=-0.019 Sum_probs=46.2
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcC---CCcEEEEeCCCcc--chhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHH
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALK 144 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~---~~~i~f~~iqs~~--~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~ 144 (210)
+.+||.=..||+|.+..++|..+.. .-.+.++++.... .+++.+..|... ..+-.+--+|+...|.+-+..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~----~~vP~ifi~g~~igg~~~~~~ 77 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPV----ETVPQIFVDQKHIGGCTDFEA 77 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCC----CcCCEEEECCEEEcCHHHHHH
Confidence 5688888999999999999987532 3357777777542 112222223211 122222225899999998877
Q ss_pred HHH
Q 028306 145 VLS 147 (210)
Q Consensus 145 il~ 147 (210)
+.+
T Consensus 78 ~~~ 80 (85)
T PRK11200 78 YVK 80 (85)
T ss_pred HHH
Confidence 654
No 12
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=90.78 E-value=0.33 Score=35.82 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=16.2
Q ss_pred CeEEEEcCCCcccHHHHHHHHh
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIR 91 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~ 91 (210)
..++|+|-+|+.|...-..+..
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~ 29 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFP 29 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHH
Confidence 4678899999999988777763
No 13
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=90.68 E-value=1.2 Score=30.88 Aligned_cols=68 Identities=6% Similarity=-0.146 Sum_probs=43.9
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccc--hhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHH
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAA--EPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKV 145 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~--~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~i 145 (210)
+.+||.=..||.|.+...+|..++. .+.+.++..... .++.+..|- ..+-.+--+|+.+.|.+.+..+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi--~~~~~di~~~~~~~~el~~~~g~------~~vP~v~i~~~~iGg~~~~~~~ 71 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGL--PYVEINIDIFPERKAELEERTGS------SVVPQIFFNEKLVGGLTDLKSL 71 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCC--ceEEEECCCCHHHHHHHHHHhCC------CCcCEEEECCEEEeCHHHHHhh
Confidence 4678888889999999999987653 578888876432 222222221 1222222257999999987654
No 14
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=90.56 E-value=0.58 Score=41.40 Aligned_cols=61 Identities=10% Similarity=0.048 Sum_probs=39.1
Q ss_pred CCeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccc-----------hhHHHhcCCCHHHhhccEEEEECC
Q 028306 69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAA-----------EPYLRLCGLDREDVLRRFLFVEGP 132 (210)
Q Consensus 69 ~~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~-----------~~~L~~~gi~~e~~~~~l~vv~~~ 132 (210)
--+++||.|+|++|...+--|+.+...-.|...++.-+.. ....+..|+.. --++.+++.+
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~---~Pal~Lv~~~ 223 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKY---FPALYLVNPK 223 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCcc---CceEEEEECC
Confidence 3589999999999999999998776544555555432211 11224555543 2467777765
No 15
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=89.32 E-value=2 Score=29.36 Aligned_cols=71 Identities=8% Similarity=-0.003 Sum_probs=44.9
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccc--hhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHH
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAA--EPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLS 147 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~--~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~ 147 (210)
+.+||.=-.||.|.+..++|..++. .+..+++..... +++.+..|.. ..+-.+--+|+...|.+.+.++..
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i--~~~~i~i~~~~~~~~~~~~~~~~~-----~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGV--DYEEIDVDGDPALREEMINRSGGR-----RTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--cEEEEECCCCHHHHHHHHHHhCCC-----CccCEEEECCEEEeChHHHHHHHh
Confidence 3567777899999999999987643 677888866411 1111222211 022222235899999999877643
No 16
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=89.32 E-value=1.2 Score=32.28 Aligned_cols=66 Identities=15% Similarity=0.080 Sum_probs=48.5
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEEC-CCeEE
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG-PGLYH 136 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~-~G~~y 136 (210)
-.+++|+.+|+-|......+.... -.+++.|+-+.......+.+.+|+..+.. -.+.++.. +|+.|
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~-P~~~~~~~~~~~k~ 83 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDL-PVIAIINLSDGKKY 83 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhC-CEEEEEeccccccc
Confidence 356788899999999999887654 24678888888777667788999987655 46666654 24444
No 17
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=88.44 E-value=1.4 Score=29.57 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=32.0
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcC-CCcEEEEeCCCccchhHHHhcCCC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLD 118 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~-~~~i~f~~iqs~~~~~~L~~~gi~ 118 (210)
+.++||=.+|+.|......+..... ...+.|.-+.-....++.+.+|+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~ 51 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVM 51 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCc
Confidence 3578899999999999999877632 234555544333334445666763
No 18
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=88.33 E-value=0.36 Score=42.57 Aligned_cols=36 Identities=6% Similarity=-0.099 Sum_probs=29.2
Q ss_pred CCeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCC
Q 028306 69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQ 104 (210)
Q Consensus 69 ~~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iq 104 (210)
.-+++||.|+|++|...+--|+.+.....+...+++
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS 180 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVS 180 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEe
Confidence 468999999999999999999888765566665554
No 19
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=88.17 E-value=5.2 Score=28.82 Aligned_cols=73 Identities=7% Similarity=0.028 Sum_probs=45.0
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCC---CcEEEEeCCCcc--chhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHH
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKY---RKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVL 146 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~---~~i~f~~iqs~~--~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il 146 (210)
+||.=..||+|.+..++|.++... -.+..++++... .+++.+..|... .++-.+--+|+...|++.+..+.
T Consensus 3 ~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~----~tVP~ifi~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 3 VIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPV----ETVPQIFVDEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCC----CCcCeEEECCEEecCHHHHHHHH
Confidence 567777999999999999887532 356777777432 112222223110 23323323589999999988875
Q ss_pred Hh
Q 028306 147 SH 148 (210)
Q Consensus 147 ~~ 148 (210)
+.
T Consensus 79 ~~ 80 (86)
T TIGR02183 79 KE 80 (86)
T ss_pred Hh
Confidence 43
No 20
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=87.58 E-value=5 Score=27.48 Aligned_cols=69 Identities=14% Similarity=0.017 Sum_probs=43.1
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHh-cCCCHHHhhccEEEEECCCeEEEcHHHHHHHH
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRL-CGLDREDVLRRFLFVEGPGLYHQASTAALKVL 146 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~-~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il 146 (210)
+.+||-=..||+|.+..++|..++ -.+...++........+.. .|. .++-.+--+|+...|++.+...+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~--i~~~~~~v~~~~~~~~~~~~~g~------~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENG--ISYEEIPLGKDITGRSLRAVTGA------MTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcC--CCcEEEECCCChhHHHHHHHhCC------CCcCeEEECCEEEeCHHHHHHHh
Confidence 456777789999999999998654 3567777765532121211 121 12322333588899998877654
No 21
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=87.38 E-value=4.4 Score=25.93 Aligned_cols=68 Identities=13% Similarity=-0.002 Sum_probs=38.4
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHH
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKV 145 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~i 145 (210)
++++-..|+.|.+...++...+. .+....+........ +...+++. ..+=++..+|..+.++.|+.+-
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i--~~~~~~~~~~~~~~~-~~~~~~~~---~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL--PYELVPVDLGEGEQE-EFLALNPL---GKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC--CcEEEEeCCCCCCCH-HHHhcCCC---CCCCEEEECCEEEEcHHHHHHH
Confidence 57788889999998888876653 344444433222111 11112211 2333333448888989887764
No 22
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=86.78 E-value=3.4 Score=28.46 Aligned_cols=69 Identities=7% Similarity=0.087 Sum_probs=42.4
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEE-EEEC---CCeEEEcHHHHHHH
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFL-FVEG---PGLYHQASTAALKV 145 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~-vv~~---~G~~y~GsdAvl~i 145 (210)
+.++|+-..||+|.+...+|..... .+.+..+......+ +...+ ...+= ++++ +|.+...+.|++.-
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi--~y~~~~~~~~~~~~-~~~~~------~~~vP~l~~~~~~~~~~l~eS~~I~~y 71 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGI--PYEVVEVNPVSRKE-IKWSS------YKKVPILRVESGGDGQQLVDSSVIIST 71 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC--ceEEEECCchhHHH-HHHhC------CCccCEEEECCCCCccEEEcHHHHHHH
Confidence 4678999999999999999876654 35555553322222 12111 12332 2223 47889999998876
Q ss_pred HH
Q 028306 146 LS 147 (210)
Q Consensus 146 l~ 147 (210)
+.
T Consensus 72 L~ 73 (77)
T cd03040 72 LK 73 (77)
T ss_pred HH
Confidence 54
No 23
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=86.02 E-value=2.9 Score=29.04 Aligned_cols=62 Identities=11% Similarity=0.060 Sum_probs=43.9
Q ss_pred CCeEEEEcCCCcccHHHHHHHHhhc--C--CCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCC
Q 028306 69 QPGVVIYDGVCHLCHGGVKWVIRAD--K--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPG 133 (210)
Q Consensus 69 ~~~~V~YDG~CplC~~~v~~L~~~d--~--~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G 133 (210)
.-.+.||...|+.|......+.... . .+.+.|..+.......+.+.+|+.. . -++++++++|
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~--~-Pt~~~~~~~~ 82 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRG--Y-PTIKLFPNGS 82 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCC--C-CEEEEEcCCC
Confidence 4468899999999999888776532 2 4678888887665455667788753 2 4677777643
No 24
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=85.82 E-value=3.7 Score=27.98 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=39.4
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCcc-chhHHHhcCCCHHHhhccEEE-EECCCeEEEcHHHHHH
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA-AEPYLRLCGLDREDVLRRFLF-VEGPGLYHQASTAALK 144 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~-~~~~L~~~gi~~e~~~~~l~v-v~~~G~~y~GsdAvl~ 144 (210)
++|+-..|++|.+....+..++. .+.++.+.... ..+++ .+++. ..+=+ ++++|.....+.|+++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl--~~e~~~v~~~~~~~~~~---~~np~---~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI--TVELREVELKNKPAEML---AASPK---GTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC--CcEEEEeCCCCCCHHHH---HHCCC---CCCCEEEECCCcEEecHHHHHH
Confidence 67778899999998888876654 34444443221 12222 22332 34433 3446888899998775
No 25
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=85.34 E-value=4.8 Score=29.10 Aligned_cols=62 Identities=10% Similarity=0.071 Sum_probs=41.1
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEE
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y 136 (210)
.++||..+|+.|......+.... ..+.+.|..+.-....++...+|+. .. -.+++++ +|+..
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~--~v-Pt~~i~~-~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIM--GT-PTVQFFK-DKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCe--ec-cEEEEEE-CCeEE
Confidence 57789999999999988886532 2345767666655444556677764 22 4566665 46654
No 26
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=85.12 E-value=1.8 Score=29.83 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=32.9
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCCccchhHHHhcCCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLD 118 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs~~~~~~L~~~gi~ 118 (210)
.++||-.+|+.|......+.+.. ....+.+..+.-+...+..+.+|+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~ 52 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIM 52 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCc
Confidence 57999999999999999987642 2234665555444444555667765
No 27
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=84.93 E-value=2.5 Score=37.40 Aligned_cols=63 Identities=6% Similarity=0.168 Sum_probs=39.7
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcCCC--cEEEEeCCCcc---------chhHHHhcCCCHHHhhccEEEEEC-CCeE
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADKYR--KIKFCCLQSQA---------AEPYLRLCGLDREDVLRRFLFVEG-PGLY 135 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~~~--~i~f~~iqs~~---------~~~~L~~~gi~~e~~~~~l~vv~~-~G~~ 135 (210)
-++.||-++|+.|...+-.|..+.... .+.++++.... ...+.+.+|+.. .-+++++++ +|.+
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~---vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT---VPAVFLADPDPNQF 243 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCc---CCeEEEEECCCCEE
Confidence 478899999999999998887665332 45555554321 122345667642 257788887 4443
No 28
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=84.73 E-value=5.6 Score=27.69 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=42.3
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCcc--chhHHHhcCCCHHHhhccE-EEEEC-CCeEEEcHHHHHHHH
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRF-LFVEG-PGLYHQASTAALKVL 146 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~--~~~~L~~~gi~~e~~~~~l-~vv~~-~G~~y~GsdAvl~il 146 (210)
.++|+...||+|.+...+|..+.. .+...++.... ..+++ .+++. ..+ .++++ +|....++.|++.-+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi--~y~~~~v~~~~~~~~~~~---~~~p~---~~vP~l~~~~~~~~l~es~~I~~yL 73 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELEL--DVILYPCPKGSPKRDKFL---EKGGK---VQVPYLVDPNTGVQMFESADIVKYL 73 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCC--cEEEEECCCChHHHHHHH---HhCCC---CcccEEEeCCCCeEEEcHHHHHHHH
Confidence 467778899999998888876543 45556664321 12222 12221 233 23443 478899999998866
Q ss_pred H
Q 028306 147 S 147 (210)
Q Consensus 147 ~ 147 (210)
.
T Consensus 74 ~ 74 (77)
T cd03041 74 F 74 (77)
T ss_pred H
Confidence 4
No 29
>PHA03050 glutaredoxin; Provisional
Probab=83.94 E-value=4.9 Score=30.69 Aligned_cols=72 Identities=8% Similarity=0.062 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCCcccHHHHHHHHhhcCC-CcEEEEeCCCc-cch---hHHHh-cCCCHHHhhccEEEEECCCeEEEcHHH
Q 028306 68 LQPGVVIYDGVCHLCHGGVKWVIRADKY-RKIKFCCLQSQ-AAE---PYLRL-CGLDREDVLRRFLFVEGPGLYHQASTA 141 (210)
Q Consensus 68 ~~~~~V~YDG~CplC~~~v~~L~~~d~~-~~i~f~~iqs~-~~~---~~L~~-~gi~~e~~~~~l~vv~~~G~~y~GsdA 141 (210)
.++.+||-=..||+|.+..++|...... ..+..+++... .+. ..+.. .|. .++-.+--+|+...|.+-
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~------~tVP~IfI~g~~iGG~dd 85 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG------RTVPRIFFGKTSIGGYSD 85 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC------CCcCEEEECCEEEeChHH
Confidence 3578888899999999999999877642 35778888742 111 11221 221 233222225899999988
Q ss_pred HHHH
Q 028306 142 ALKV 145 (210)
Q Consensus 142 vl~i 145 (210)
+..+
T Consensus 86 l~~l 89 (108)
T PHA03050 86 LLEI 89 (108)
T ss_pred HHHH
Confidence 6664
No 30
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=83.94 E-value=1.7 Score=35.88 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=26.3
Q ss_pred CCCeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeC
Q 028306 68 LQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCL 103 (210)
Q Consensus 68 ~~~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~i 103 (210)
....++|+|-+||+|.+.-..+......-++.+.++
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEc
Confidence 346899999999999999998875333335555544
No 31
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=83.89 E-value=5.3 Score=28.27 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=40.8
Q ss_pred CeEEEEcCCCcccHHHHHHHHhh----cCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRA----DKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPG 133 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~----d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G 133 (210)
-.+.||+.+|+.|......+.+. ...+.+.|..+.......+.+.+|+.. . -+++++++++
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~--~-P~~~~~~~~~ 80 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSG--F-PTIKFFPKGK 80 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCc--C-CEEEEecCCC
Confidence 47889999999999876655432 222258888766655555566777753 2 5777777644
No 32
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=83.28 E-value=1.6 Score=38.19 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=25.0
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcCCC--cEEEEeC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADKYR--KIKFCCL 103 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~~~--~i~f~~i 103 (210)
..+||.|-+||+|++.-.-+......+ +++++++
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 478999999999999988776543333 4566654
No 33
>PTZ00051 thioredoxin; Provisional
Probab=83.20 E-value=2.3 Score=30.42 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=42.1
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcC-CCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEE
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~-~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y 136 (210)
.+.||..+|+-|......+..... ...+.|..+.......+.+.+++. .+ -.+++.. +|+..
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~-Pt~~~~~-~g~~~ 84 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENIT--SM-PTFKVFK-NGSVV 84 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCc--ee-eEEEEEe-CCeEE
Confidence 678999999999999888876532 345778777666555666777764 22 3455554 46543
No 34
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=83.17 E-value=6.3 Score=26.52 Aligned_cols=69 Identities=9% Similarity=-0.024 Sum_probs=40.1
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc-cchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHH
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLS 147 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~-~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~ 147 (210)
.++++...|+.|.+....+..... .+....+... ...++++ +++ ...+-++..+|.....+.|+++-+.
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi--~~~~~~v~~~~~~~~~~~---~~p---~~~vP~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGV--SVEIIDVDPDNPPEDLAE---LNP---YGTVPTLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCC--ccEEEEcCCCCCCHHHHh---hCC---CCCCCEEEECCEEEEcHHHHHHHHH
Confidence 367888999999998777765543 2333333322 1222222 222 1344344445788889999887654
No 35
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=82.98 E-value=6.8 Score=27.15 Aligned_cols=68 Identities=7% Similarity=0.049 Sum_probs=42.4
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccc--hhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHH
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAA--EPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLS 147 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~--~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~ 147 (210)
+||-=..||.|.+..++|..++. .+...++..... +++.+..| ..++-.+.-+|+...|.+.+..+..
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~i--~~~~~di~~~~~~~~~~~~~~g------~~~vP~i~i~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKGV--TFTEIRVDGDPALRDEMMQRSG------RRTVPQIFIGDVHVGGCDDLYALDR 71 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcCC--CcEEEEecCCHHHHHHHHHHhC------CCCcCEEEECCEEEcChHHHHHHHH
Confidence 56667889999999999987653 567777765421 11111112 0122223335899999998777643
No 36
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=82.95 E-value=2.7 Score=28.47 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=28.1
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ 106 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~ 106 (210)
+.+||+-.+|+.|.+...+|.+.. -.+.++++...
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~--~~~~~idi~~~ 35 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLG--AAYEWVDIEED 35 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcC--CceEEEeCcCC
Confidence 368999999999999999997664 35778887654
No 37
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=82.95 E-value=5.5 Score=28.94 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=37.4
Q ss_pred CCcccHHHHHHHHhhcCCCcEEEEeCCCccc-hhHHHh-cCCCHHHhhccEEEEECCCeEEEcHHHHHHHH
Q 028306 78 VCHLCHGGVKWVIRADKYRKIKFCCLQSQAA-EPYLRL-CGLDREDVLRRFLFVEGPGLYHQASTAALKVL 146 (210)
Q Consensus 78 ~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~-~~~L~~-~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il 146 (210)
.||+|.+..++|.... -.+..+++..... +..+.. .|.. .+ -.+++ +|+.+.|.+-+..+.
T Consensus 22 ~Cp~C~~ak~~L~~~~--i~y~~idv~~~~~~~~~l~~~~g~~--tv--P~vfi--~g~~iGG~~~l~~l~ 84 (90)
T cd03028 22 RCGFSRKVVQILNQLG--VDFGTFDILEDEEVRQGLKEYSNWP--TF--PQLYV--NGELVGGCDIVKEMH 84 (90)
T ss_pred CCcHHHHHHHHHHHcC--CCeEEEEcCCCHHHHHHHHHHhCCC--CC--CEEEE--CCEEEeCHHHHHHHH
Confidence 8999999999997764 4677888755421 111221 1211 11 12344 589999999877653
No 38
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=82.77 E-value=1.8 Score=33.05 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=27.6
Q ss_pred CCCCCCeEEEEcCCCcccHHHHHHHHhhc---CCCcEEEEeC
Q 028306 65 PSLLQPGVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCL 103 (210)
Q Consensus 65 p~~~~~~~V~YDG~CplC~~~v~~L~~~d---~~~~i~f~~i 103 (210)
|......++|+|=.||+|.+.-..+.+.- ..-++.|.++
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 34455789999999999999888876632 2225666655
No 39
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=82.76 E-value=3.5 Score=29.23 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=44.3
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcC--CCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeE
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY 135 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~--~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~ 135 (210)
-.+.||-.+|+.|......+.+... .+.+.|..+.......+.+.+++.. . -.++++.+ |+.
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~~-g~~ 83 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKS--V-PTIIFFKN-GKE 83 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSS--S-SEEEEEET-TEE
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCC--C-CEEEEEEC-CcE
Confidence 3688999999999999988865432 2277777777766667778888763 2 46677765 443
No 40
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=81.76 E-value=6.7 Score=29.13 Aligned_cols=68 Identities=12% Similarity=0.228 Sum_probs=41.6
Q ss_pred CeEEEEc------CCCcccHHHHHHHHhhcCCCcEEEEeCCCcc-chhHHHh-cCCCHHHhhccE--EEEECCCeEEEcH
Q 028306 70 PGVVIYD------GVCHLCHGGVKWVIRADKYRKIKFCCLQSQA-AEPYLRL-CGLDREDVLRRF--LFVEGPGLYHQAS 139 (210)
Q Consensus 70 ~~~V~YD------G~CplC~~~v~~L~~~d~~~~i~f~~iqs~~-~~~~L~~-~gi~~e~~~~~l--~vv~~~G~~y~Gs 139 (210)
..+|+|= ..||+|.+..++|..+.. .+..+++.... ....+.. .|. .++ +++ +|+.+.|.
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i--~~~~~di~~~~~~~~~l~~~tg~------~tvP~vfi--~g~~iGG~ 81 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGV--PFAYVNVLEDPEIRQGIKEYSNW------PTIPQLYV--KGEFVGGC 81 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCC--CEEEEECCCCHHHHHHHHHHhCC------CCCCEEEE--CCEEEeCh
Confidence 3556663 469999999999987653 57777875432 1111211 111 122 334 58999999
Q ss_pred HHHHHHHH
Q 028306 140 TAALKVLS 147 (210)
Q Consensus 140 dAvl~il~ 147 (210)
+.+..+..
T Consensus 82 ddl~~l~~ 89 (97)
T TIGR00365 82 DIIMEMYQ 89 (97)
T ss_pred HHHHHHHH
Confidence 98777643
No 41
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=81.42 E-value=2.1 Score=36.97 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCCcccHHHHHHHHhhcC-CCcEEEE
Q 028306 68 LQPGVVIYDGVCHLCHGGVKWVIRADK-YRKIKFC 101 (210)
Q Consensus 68 ~~~~~V~YDG~CplC~~~v~~L~~~d~-~~~i~f~ 101 (210)
....+||.|-+||+|++.-..+...+. .-+++|.
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 345889999999999999999887653 3355554
No 42
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=81.16 E-value=7.1 Score=29.11 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=43.8
Q ss_pred CCeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc-cchhHHHhcC-CCHHHhhccEEEEECCCeEEEcHHHHHHH
Q 028306 69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAEPYLRLCG-LDREDVLRRFLFVEGPGLYHQASTAALKV 145 (210)
Q Consensus 69 ~~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~-~~~~~L~~~g-i~~e~~~~~l~vv~~~G~~y~GsdAvl~i 145 (210)
++.+||==..||+|.+..++|.+.. -.+..+++... .+.++.+..+ ++- ..++-.+--+|+.+.|.+-+..+
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~--i~~~~vdid~~~~~~~~~~~l~~~tg---~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLG--VNPAVHEIDKEPAGKDIENALSRLGC---SPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC--CCCEEEEcCCCccHHHHHHHHHHhcC---CCCcCeEEECCEEEcCHHHHHHH
Confidence 5678888899999999999997664 34567777533 2222211111 000 12333333358999999886664
No 43
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=80.71 E-value=12 Score=25.23 Aligned_cols=70 Identities=16% Similarity=0.037 Sum_probs=39.5
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCcc--chhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHH
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVL 146 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~--~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il 146 (210)
.++|+...|+.|.+..-.+......-.+..+++.... ..+++ .+++. ..+-++..+|.....+.|++.-+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~---~~~p~---~~vP~l~~~~~~l~es~aI~~yL 72 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFL---KLNPQ---HTVPTLVDNGFVLWESHAILIYL 72 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHH---hhCcC---CCCCEEEECCEEEEcHHHHHHHH
Confidence 3688999999999977777665543233333332211 12221 22322 23333333578889999987654
No 44
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=80.37 E-value=1.9 Score=34.99 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=25.5
Q ss_pred CCCeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEe
Q 028306 68 LQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCC 102 (210)
Q Consensus 68 ~~~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~ 102 (210)
+.+.+.||-.+|+.|.+++-.+.++.....+.++.
T Consensus 51 ~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~ 85 (153)
T TIGR02738 51 DYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYA 85 (153)
T ss_pred CCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEE
Confidence 34589999999999999999988764332333433
No 45
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=80.01 E-value=11 Score=25.16 Aligned_cols=67 Identities=12% Similarity=-0.040 Sum_probs=38.5
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc----cchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHH
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ----AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKV 145 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~----~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~i 145 (210)
+++++...|+.|.+..-.+...+.. +....+... ....++ .+++ ...+-++..+|.....+.|+++-
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~---~~~p---~~~vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIP--YEWVEVDILKGETRTPEFL---ALNP---NGEVPVLELDGRVLAESNAILVY 71 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCC--cEEEEecCCCcccCCHHHH---HhCC---CCCCCEEEECCEEEEcHHHHHHH
Confidence 3688899999999977777655432 333333211 111211 1222 12343343458899999998764
No 46
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=79.60 E-value=4.8 Score=34.94 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=48.7
Q ss_pred EcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHH-hCCCc
Q 028306 75 YDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLS-HLPLP 152 (210)
Q Consensus 75 YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~-~Lp~~ 152 (210)
..|+|+||++...-|...+..=.+.-++++.... . ...+++. ..+-++.-+|.+..-++.+...+. .++.+
T Consensus 17 ~~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~-~---f~~~sp~---~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p 88 (221)
T KOG1422|consen 17 SLGDCPFCQRLFMTLELKGVPFKVTTVDLSRKPE-W---FLDISPG---GKPPVLKFDEKWVTDSDKIEEFLEEKLPPP 88 (221)
T ss_pred cCCCChhHHHHHHHHHHcCCCceEEEeecCCCcH-H---HHhhCCC---CCCCeEEeCCceeccHHHHHHHHHHhcCCC
Confidence 4699999999988887666555677788776532 2 2234443 355555556899999999988655 45543
No 47
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=79.42 E-value=5.8 Score=28.82 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=38.5
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCCcc--chhHHHhcCCCHHHhhccEEEEECCC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEGPG 133 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs~~--~~~~L~~~gi~~e~~~~~l~vv~~~G 133 (210)
-.+.||-.+|+.|......+.... ..+.+.|..+.... ...+...+++.. . -+++++++++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~--~-Pt~~~~~~~~ 85 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQG--F-PTLKVFRPPK 85 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCc--C-CEEEEEeCCC
Confidence 478899999999999876665442 23445555443332 445566777653 2 4677776644
No 48
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=79.35 E-value=5.5 Score=29.99 Aligned_cols=34 Identities=6% Similarity=0.227 Sum_probs=26.8
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQ 104 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iq 104 (210)
.+.||-.+|+.|...+..+.++.....+.++.+.
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~ 62 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMALARQGRVPIYGIN 62 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEE
Confidence 5789999999999999999876544446666665
No 49
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=79.28 E-value=8.8 Score=28.48 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=20.4
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADK 94 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~ 94 (210)
-.+.||-.+|+.|......+.++..
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~~~~~ 47 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVNQLAA 47 (123)
T ss_pred EEEEEECCcChhhhhhChHHHHHHh
Confidence 4678899999999999888876543
No 50
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=79.23 E-value=5.4 Score=29.78 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=38.6
Q ss_pred CCCcccHHHHHHHHhhcCCCcEEEEeCCCcc-chhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHHhC
Q 028306 77 GVCHLCHGGVKWVIRADKYRKIKFCCLQSQA-AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLSHL 149 (210)
Q Consensus 77 G~CplC~~~v~~L~~~d~~~~i~f~~iqs~~-~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~~L 149 (210)
|.|++|++..-.|..+.. .+...++.... .+.++ .+++. ..+=++..+|.++..+.++...+...
T Consensus 20 g~cpf~~rvrl~L~eKgi--~ye~~~vd~~~~p~~~~---~~nP~---g~vPvL~~~~~~i~eS~~I~eYLde~ 85 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGV--VFNVTTVDMKRKPEDLK---DLAPG---TQPPFLLYNGEVKTDNNKIEEFLEET 85 (91)
T ss_pred CCChhHHHHHHHHHHCCC--ceEEEEeCCCCCCHHHH---HhCCC---CCCCEEEECCEEecCHHHHHHHHHHH
Confidence 899999998877765543 34444443221 22222 22332 23433334589999999998877654
No 51
>PRK10824 glutaredoxin-4; Provisional
Probab=79.11 E-value=13 Score=28.98 Aligned_cols=60 Identities=12% Similarity=0.223 Sum_probs=35.9
Q ss_pred CCcccHHHHHHHHhhcCCCcEEEEeCCCccc-hhHHHhc-CCCHHHhhccE--EEEECCCeEEEcHHHHHHHHH
Q 028306 78 VCHLCHGGVKWVIRADKYRKIKFCCLQSQAA-EPYLRLC-GLDREDVLRRF--LFVEGPGLYHQASTAALKVLS 147 (210)
Q Consensus 78 ~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~-~~~L~~~-gi~~e~~~~~l--~vv~~~G~~y~GsdAvl~il~ 147 (210)
.||+|.+..+.|.... -.+..+++..... +..+... |- .++ ++| +|+...|.|-+..+..
T Consensus 29 ~Cpyc~~ak~lL~~~~--i~~~~idi~~d~~~~~~l~~~sg~------~TVPQIFI--~G~~IGG~ddl~~l~~ 92 (115)
T PRK10824 29 SCGFSAQAVQALSACG--ERFAYVDILQNPDIRAELPKYANW------PTFPQLWV--DGELVGGCDIVIEMYQ 92 (115)
T ss_pred CCchHHHHHHHHHHcC--CCceEEEecCCHHHHHHHHHHhCC------CCCCeEEE--CCEEEcChHHHHHHHH
Confidence 7999999999998764 2445566654321 1112111 11 122 334 5899999998777644
No 52
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=78.58 E-value=4.1 Score=27.55 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=40.4
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcC-CCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCe
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL 134 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~-~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~ 134 (210)
.++||-.+|+.|......+..... .+.+.|..+.-.....+...+|+.. . -.++++.+ |+
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~--~-P~~~~~~~-g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRS--I-PTFLFFKN-GK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCccc--c-cEEEEEEC-CE
Confidence 688999999999999888876433 3667777665554455666777653 2 35555544 55
No 53
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=78.54 E-value=3.6 Score=29.85 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=39.9
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEEC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~ 131 (210)
-.+.||-.+|+.|......+.+.. ..+.+.|.-+.......+.+.+|+.. . -+++++.+
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~--~-Pt~~~~~~ 82 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRA--Y-PTIRLYPG 82 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCc--c-cEEEEEcC
Confidence 367799999999999888776543 23457777666555555566777752 2 46666655
No 54
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=78.19 E-value=3.5 Score=28.48 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.6
Q ss_pred eEEEEcCCCcccHHHHHHHHhh
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRA 92 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~ 92 (210)
.++|+|=.||.|...-..+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 3689999999999999999876
No 55
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=77.96 E-value=4.6 Score=28.42 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=40.3
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCe
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL 134 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~ 134 (210)
-.+.+|-.+|+.|......+.+.. ..+.+.|.-+.......+...+|+.. . -.++++.+ |+
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-P~~~~~~~-g~ 79 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRS--I-PTLLLFKN-GK 79 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCc--C-CEEEEEeC-Cc
Confidence 367899999999999887776542 33457776665544455667777763 2 45666654 54
No 56
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=77.81 E-value=19 Score=24.29 Aligned_cols=67 Identities=10% Similarity=0.155 Sum_probs=39.3
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccE-EEEECCCeEEEcHHHHHHHH
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTAALKVL 146 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l-~vv~~~G~~y~GsdAvl~il 146 (210)
++++.-.||+|.+..-.|...+. .+..+.+........++ ..+ ...+ ++++++|....++.|+++-+
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl--~~~~~~~~~~~~~~~~~---~~~---~~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNI--PVEQIILQNDDEATPIR---MIG---AKQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCC--CeEEEECCCCchHHHHH---hcC---CCccCEEEeCCCeEeehHHHHHHHH
Confidence 57788889999997776655433 45555554322112111 111 1233 23445588999999988654
No 57
>PRK10329 glutaredoxin-like protein; Provisional
Probab=77.52 E-value=10 Score=27.16 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=27.6
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ 106 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~ 106 (210)
+.+||--..||+|.+...+|.+.. =.+..+++..+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~g--I~~~~idi~~~ 36 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRG--FDFEMINVDRV 36 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCC--CceEEEECCCC
Confidence 568888899999999999997653 35777888754
No 58
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=77.43 E-value=19 Score=25.78 Aligned_cols=70 Identities=9% Similarity=-0.014 Sum_probs=41.0
Q ss_pred CCeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccc-hhHHHhcCCCHHHhhccEEEEE-CCCeEEEcHHHHHHHH
Q 028306 69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAA-EPYLRLCGLDREDVLRRFLFVE-GPGLYHQASTAALKVL 146 (210)
Q Consensus 69 ~~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~-~~~L~~~gi~~e~~~~~l~vv~-~~G~~y~GsdAvl~il 146 (210)
...++|+-..|++|.+....+...+. .+.++.+..... ..+.+ +++ ...+-++. ++|..+..+.||++-+
T Consensus 17 ~~~~Ly~~~~sp~~~kv~~~L~~~gl--~~~~~~v~~~~~~~~~~~---~np---~~~vPvL~~~~g~~l~eS~aI~~yL 88 (89)
T cd03055 17 GIIRLYSMRFCPYAQRARLVLAAKNI--PHEVININLKDKPDWFLE---KNP---QGKVPALEIDEGKVVYESLIICEYL 88 (89)
T ss_pred CcEEEEeCCCCchHHHHHHHHHHcCC--CCeEEEeCCCCCcHHHHh---hCC---CCCcCEEEECCCCEEECHHHHHHhh
Confidence 34788889999999997777765543 345554443222 11222 122 12343333 4478899999987643
No 59
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=77.41 E-value=16 Score=24.31 Aligned_cols=68 Identities=6% Similarity=-0.074 Sum_probs=37.5
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCC-c-cchhHHHhcCCCHHHhhccEEEE-ECCCeEEEcHHHHHHH
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS-Q-AAEPYLRLCGLDREDVLRRFLFV-EGPGLYHQASTAALKV 145 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs-~-~~~~~L~~~gi~~e~~~~~l~vv-~~~G~~y~GsdAvl~i 145 (210)
++|+-..|+.|.+..-.+...+..-...-+++.. . ....+ ..+++. ..+-++ .++|.....+.|++.-
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~---~~~~p~---~~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEF---LAKNPA---GTVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHH---HhhCCC---CCCCEEEeCCCCEEecHHHHHHH
Confidence 5667778999999887776655332233333211 1 11121 122221 333333 3568888999998764
No 60
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=77.40 E-value=6 Score=29.23 Aligned_cols=38 Identities=8% Similarity=0.206 Sum_probs=26.5
Q ss_pred CeEEEEcC-CCcccHHHHHHHHhhc---CCCcEEEEeCCCcc
Q 028306 70 PGVVIYDG-VCHLCHGGVKWVIRAD---KYRKIKFCCLQSQA 107 (210)
Q Consensus 70 ~~~V~YDG-~CplC~~~v~~L~~~d---~~~~i~f~~iqs~~ 107 (210)
-.+++|-+ +|+.|...+.-+.+.- ....+.++-+....
T Consensus 28 ~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~ 69 (124)
T PF00578_consen 28 VVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDD 69 (124)
T ss_dssp EEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSS
T ss_pred EEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccc
Confidence 36778999 9999999987776532 23456666665543
No 61
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=77.32 E-value=13 Score=26.33 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=42.4
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeE
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY 135 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~ 135 (210)
.+.||-.+|+-|......+.+.. -.+.+.|..+.......+.+.+++.. + -.+++++ +|+.
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~--~-Pt~~~~~-~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQA--L-PTVYLFA-AGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCC--C-CEEEEEe-CCEE
Confidence 67899999999999988776543 23457777776665566666777752 2 4677776 5764
No 62
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=77.00 E-value=5.9 Score=28.19 Aligned_cols=60 Identities=10% Similarity=0.121 Sum_probs=40.2
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc----CCCcEEEEeCCCcc-chhHHHhcCCCHHHhhccEEEEECC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD----KYRKIKFCCLQSQA-AEPYLRLCGLDREDVLRRFLFVEGP 132 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d----~~~~i~f~~iqs~~-~~~~L~~~gi~~e~~~~~l~vv~~~ 132 (210)
-.+.+|..+|+.|......+.... ..+.+.|..+.... ...+.+.+++.. . -.+++++++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~--~-P~~~~~~~~ 85 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSG--F-PTLKFFPKG 85 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCC--c-CEEEEEeCC
Confidence 478899999999998776665432 23568887776555 455666777652 2 466676654
No 63
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=76.91 E-value=5.4 Score=26.28 Aligned_cols=34 Identities=9% Similarity=0.112 Sum_probs=26.7
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ 106 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~ 106 (210)
.++|+-..|+.|.+...++...+ -.+..+++...
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~--i~~~~vdi~~~ 35 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKG--IAFEEIDVEKD 35 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCC--CeEEEEeccCC
Confidence 67899999999999998887643 35777777654
No 64
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=76.78 E-value=9.2 Score=30.18 Aligned_cols=36 Identities=8% Similarity=0.210 Sum_probs=24.9
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc---CCCcEEEEeCCC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQS 105 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d---~~~~i~f~~iqs 105 (210)
-.+.||..+|+.|......+.+.. ....+.++.+..
T Consensus 64 ~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~ 102 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNV 102 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 467899999999999877775543 223466666643
No 65
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=76.72 E-value=16 Score=27.55 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=36.7
Q ss_pred CeEEEEc-CCCcccHHHHHHHHhhcC-CCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEEC
Q 028306 70 PGVVIYD-GVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (210)
Q Consensus 70 ~~~V~YD-G~CplC~~~v~~L~~~d~-~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~ 131 (210)
+.+|+|. .+|+.|.....++..... .+.+.|.-+.-+...++.+.+|+..- -++++.++
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~v---Pt~~i~~~ 84 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERV---PTTIFLQD 84 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcC---CEEEEEeC
Confidence 4566655 599999998888876542 34455554444444566677776642 46666654
No 66
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=76.39 E-value=13 Score=29.29 Aligned_cols=63 Identities=16% Similarity=0.237 Sum_probs=40.8
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc--CCCc--EEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEE
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD--KYRK--IKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d--~~~~--i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y 136 (210)
.+.||=.+|+-|......+.++. ..++ |.++++.......+...+++.. .-.+++++.+|+..
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~---iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDG---IPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCC---CCEEEEECCCCCEE
Confidence 56788889999999988876543 1233 4444555443345566777653 25777887678754
No 67
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=76.05 E-value=6.7 Score=23.65 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=25.4
Q ss_pred eEEEEcCCCcccHHHHHHHHhh---cCCCcEEEEeCCCc
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRA---DKYRKIKFCCLQSQ 106 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~---d~~~~i~f~~iqs~ 106 (210)
.++++...|+.|......+.+. ...-.+..++....
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDED 39 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCC
Confidence 3689999999999999998854 33334555554444
No 68
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=75.29 E-value=7.3 Score=29.55 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=27.3
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ 106 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~ 106 (210)
.+||.-..|+.|.+..+||..++. .+.++++...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i--~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGV--DYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCC--ceEEecccCC
Confidence 368889999999999999987653 6788877543
No 69
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=74.95 E-value=9 Score=28.89 Aligned_cols=64 Identities=8% Similarity=0.073 Sum_probs=36.3
Q ss_pred CeEEEEcCCCcccHHHHHHHH---hh--cCCCcEEEEeCC--Cc-----------cchhHHHhcCCCHHHhhccEEEEEC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVI---RA--DKYRKIKFCCLQ--SQ-----------AAEPYLRLCGLDREDVLRRFLFVEG 131 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~---~~--d~~~~i~f~~iq--s~-----------~~~~~L~~~gi~~e~~~~~l~vv~~ 131 (210)
-.+.||-.+|+.|.+....+. .. ...+.+.++-+. +. ....+...+++.. . -+++++++
T Consensus 17 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~--~-Pt~~~~~~ 93 (125)
T cd02951 17 LLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF--T-PTVIFLDP 93 (125)
T ss_pred EEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc--c-cEEEEEcC
Confidence 367899999999999876442 11 112345554443 21 1133445566542 2 46788887
Q ss_pred C-CeEE
Q 028306 132 P-GLYH 136 (210)
Q Consensus 132 ~-G~~y 136 (210)
+ |+..
T Consensus 94 ~gg~~~ 99 (125)
T cd02951 94 EGGKEI 99 (125)
T ss_pred CCCcee
Confidence 7 6643
No 70
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=74.67 E-value=4.8 Score=28.79 Aligned_cols=59 Identities=12% Similarity=0.086 Sum_probs=38.6
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEEC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~ 131 (210)
-.+.+|-.+|+.|......+.... ..+.+.|..+.......+.+.+|+.. . -.++++.+
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~--~-P~~~~~~~ 81 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRG--F-PTIKVFGA 81 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCc--c-CEEEEECC
Confidence 367889999999999877665432 23557776665554555667777752 2 45666654
No 71
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=74.36 E-value=6.2 Score=28.57 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=39.7
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCe
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL 134 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~ 134 (210)
-.+.||-.+|+.|......+.+.. -.+.+.|.-+.-.....+.+.+++. .. -+++++. +|+
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~-Pt~~~~~-~g~ 83 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVN--SY-PSLYVFP-SGM 83 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCC--cc-CEEEEEc-CCC
Confidence 367799999999999888776543 2345777666555445556667764 32 3566664 354
No 72
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=73.61 E-value=17 Score=25.69 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=42.2
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcC--CCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeE
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY 135 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~--~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~ 135 (210)
.+.||-.+|+.|......+.+... ...+.|.-+.......+...+++.. + -+++++. +|+.
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~--~-Pt~~~~~-~g~~ 80 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITA--V-PTFVFFR-NGTI 80 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCcc--c-cEEEEEE-CCEE
Confidence 578999999999998888766432 4578888776654455566777653 3 4566665 4664
No 73
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=73.57 E-value=22 Score=24.43 Aligned_cols=69 Identities=7% Similarity=-0.063 Sum_probs=43.3
Q ss_pred EEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHHh
Q 028306 73 VIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLSH 148 (210)
Q Consensus 73 V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~~ 148 (210)
++.-..|++|.+..-.+..... .+.+.++......+.+...+ + ...+=++..+|.++..+.+|+.-+..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i--~~~~~~v~~~~~~~~~~~~~--p---~~~vPvL~~~g~~l~dS~~I~~yL~~ 69 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI--PYELVPVDPEEKRPEFLKLN--P---KGKVPVLVDDGEVLTDSAAIIEYLEE 69 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE--EEEEEEEBTTSTSHHHHHHS--T---TSBSSEEEETTEEEESHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC--eEEEeccCcccchhHHHhhc--c---cccceEEEECCEEEeCHHHHHHHHHH
Confidence 4677899999997777766554 46666665443322222221 1 13443444569999999999886654
No 74
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=73.28 E-value=10 Score=26.02 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=40.6
Q ss_pred CcccHHHHHHHHhhcCCCcEEEEeCCCcc---chhHHHhcCCCHHHhhccE-EEEECCCeEEEcHHHHHHHHH
Q 028306 79 CHLCHGGVKWVIRADKYRKIKFCCLQSQA---AEPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTAALKVLS 147 (210)
Q Consensus 79 CplC~~~v~~L~~~d~~~~i~f~~iqs~~---~~~~L~~~gi~~e~~~~~l-~vv~~~G~~y~GsdAvl~il~ 147 (210)
||+|.+..-.+..+.....+.+++..... +..+.+. ++. ..+ .+++++|++...|.|+++.+.
T Consensus 2 sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~---~p~---~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 2 SPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLAL---NPR---GKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp -HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHH---STT----SSSEEEETTTEEEESHHHHHHHHH
T ss_pred chHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhcc---CcC---eEEEEEEECCCCEeeCHHHHHHHHh
Confidence 99999988888888777788888542211 1222222 221 233 355568999999999988764
No 75
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=73.28 E-value=6 Score=28.96 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=32.9
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcC-CCcEEEEeCCCccchhHHHhcCCC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLD 118 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~-~~~i~f~~iqs~~~~~~L~~~gi~ 118 (210)
...+|+...|+.|......+..... .+.+.|.-+.-....+..+.+|+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~ 64 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIM 64 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCc
Confidence 3789999999999999998876643 234555544433334445677765
No 76
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=73.13 E-value=7.3 Score=28.59 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=39.6
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcC--------CCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCe
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADK--------YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL 134 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~--------~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~ 134 (210)
.+.||-.+|+.|......+..... .+.+.|..+.......+.+.+|+.. . -++.+..+ |+
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~--~-Ptl~~~~~-g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK--Y-PTLKLFRN-GM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc--C-CEEEEEeC-Cc
Confidence 678999999999998877754321 1358877665544455667788753 3 45666543 54
No 77
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=72.56 E-value=19 Score=27.14 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=43.0
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc-CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEE
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD-KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQ 137 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d-~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~ 137 (210)
=.+.||..+|+-|......+.... ....+.|.-+.......+.+.+++.. + -+++++.+ |+...
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~--v-Pt~l~fk~-G~~v~ 89 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKV--L-PTVILFKN-GKTVD 89 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCcc--C-CEEEEEEC-CEEEE
Confidence 367789999999999888886644 23357777776665555666777663 2 35666654 66543
No 78
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=72.28 E-value=7.3 Score=28.49 Aligned_cols=33 Identities=6% Similarity=0.104 Sum_probs=23.6
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCL 103 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~i 103 (210)
.+.||-.+|+.|......+.+.. ..+.+.++-+
T Consensus 25 vl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v 59 (114)
T cd02967 25 LLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLA 59 (114)
T ss_pred EEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEE
Confidence 57789999999999988887643 2234555544
No 79
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=71.73 E-value=7 Score=30.88 Aligned_cols=39 Identities=13% Similarity=-0.040 Sum_probs=26.7
Q ss_pred CCCCCeEEEEcCCCcccHHHHHHHHhhcC--CC--cEEEEeCC
Q 028306 66 SLLQPGVVIYDGVCHLCHGGVKWVIRADK--YR--KIKFCCLQ 104 (210)
Q Consensus 66 ~~~~~~~V~YDG~CplC~~~v~~L~~~d~--~~--~i~f~~iq 104 (210)
......+.|||=.||.|.+.-..+...-. .+ ++++.++.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 34456899999999999999887754421 23 45555553
No 80
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=70.56 E-value=5.8 Score=28.34 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=36.4
Q ss_pred eEEEEcCCCcccHHHHHHHHhh----cCCCcEEEEeCCCcc--chhHHHhcCCCHHHhhccEEEEECCCe
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRA----DKYRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEGPGL 134 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~----d~~~~i~f~~iqs~~--~~~~L~~~gi~~e~~~~~l~vv~~~G~ 134 (210)
.+.||-.+|+.|......+... ...+.+.|..+.... ...+...+|+.. . -.+++.. +|+
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~--~-Pt~~~~~-~g~ 86 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKG--F-PTFKYFE-NGK 86 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcc--c-cEEEEEe-CCC
Confidence 6889999999999987655433 222456665443332 445556677642 2 3455554 355
No 81
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=68.61 E-value=32 Score=23.16 Aligned_cols=68 Identities=10% Similarity=0.030 Sum_probs=38.9
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCcc-chhHHHhcCCCHHHhhccEEE-EECCCeEEEcHHHHHHH
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA-AEPYLRLCGLDREDVLRRFLF-VEGPGLYHQASTAALKV 145 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~-~~~~L~~~gi~~e~~~~~l~v-v~~~G~~y~GsdAvl~i 145 (210)
++|+.-.|++|.+..-.+......-.+..+.+.... ...++. +++ ...+-+ +.++|.....+.|++.-
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~---~~p---~~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLA---VNP---LGKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHH---hCC---CCCCCEEEECCCCEEECHHHHHhh
Confidence 678888999999976666553223345555554221 122222 222 123333 34568888999998764
No 82
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=68.51 E-value=27 Score=29.24 Aligned_cols=65 Identities=12% Similarity=0.044 Sum_probs=40.1
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcC-CCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEEcH
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQAS 139 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~-~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~Gs 139 (210)
.++||-.+|+.|......+..... .+.+.+.-+......++...+|+.. . -++++ ..+|..+.|.
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~--v-Ptl~i-~~~~~~~~G~ 202 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMS--V-PKIVI-NKGVEEFVGA 202 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCcc--C-CEEEE-ecCCEEEECC
Confidence 456899999999998888776542 3456654444433445556677642 2 34444 4456656664
No 83
>PHA02125 thioredoxin-like protein
Probab=67.70 E-value=15 Score=25.55 Aligned_cols=44 Identities=5% Similarity=0.018 Sum_probs=32.3
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLD 118 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~ 118 (210)
.++||=.+|+-|......|.+. .+.|+.+......++.+.+++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~----~~~~~~vd~~~~~~l~~~~~v~ 45 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV----EYTYVDVDTDEGVELTAKHHIR 45 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH----hheEEeeeCCCCHHHHHHcCCc
Confidence 4789999999999988888654 3567777665555666666654
No 84
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=66.56 E-value=24 Score=30.35 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=44.9
Q ss_pred CCCCCCeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc--cchhHHHhcCCCHHHhhccEEEEEC
Q 028306 65 PSLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ--AAEPYLRLCGLDREDVLRRFLFVEG 131 (210)
Q Consensus 65 p~~~~~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~--~~~~~L~~~gi~~e~~~~~l~vv~~ 131 (210)
.....++.||-+.+|+-|...+..+..-+..-.|.|+.-+.. .-...-..++|+++.+...-+-++.
T Consensus 106 ~~~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNH 174 (200)
T TIGR03759 106 LQGGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNH 174 (200)
T ss_pred cCCCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEec
Confidence 345567888888999999999999976555556777762222 2122345679999987555444444
No 85
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=66.08 E-value=5.6 Score=33.48 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=26.8
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQ 104 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iq 104 (210)
+.++||-.+||.|.+++-.|.++...-.+.++.+.
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs 106 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYT 106 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEE
Confidence 58999999999999998888776443346665554
No 86
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=65.48 E-value=18 Score=26.79 Aligned_cols=33 Identities=9% Similarity=0.180 Sum_probs=26.9
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS 105 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs 105 (210)
.+||+=..|+.|.+..+||...+. .+.++++..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i--~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGI--EYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCC--CcEEEeecc
Confidence 368888999999999999987653 578888854
No 87
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=65.14 E-value=39 Score=25.43 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=17.4
Q ss_pred eEEEEcCCCcccHHHHHHHHh
Q 028306 71 GVVIYDGVCHLCHGGVKWVIR 91 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~ 91 (210)
.+.||-.+|+-|......+.+
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~~ 42 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLVE 42 (131)
T ss_pred EEEEECCCChHHHHHhHHHHH
Confidence 566789999999998887754
No 88
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=64.67 E-value=30 Score=25.76 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=40.4
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc-CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEE
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD-KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQ 137 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d-~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~ 137 (210)
.+.||..+|+-|......+.... ....+.|+.+..... .+.+.+++. .+ -+++++.+ |+...
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~--~~-Pt~~~f~~-G~~v~ 90 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIK--VL-PTLLVYKN-GELID 90 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCC--cC-CEEEEEEC-CEEEE
Confidence 46699999999999888886643 234567776665543 455667764 22 35666654 66543
No 89
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=64.08 E-value=32 Score=27.33 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=26.4
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc---CCCcEEEEeCCCc
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQ 106 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d---~~~~i~f~~iqs~ 106 (210)
-++.||.-.||.|.+....+.++- ....+.|+.+...
T Consensus 28 ~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d 67 (171)
T cd02969 28 LVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSN 67 (171)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecC
Confidence 467889999999998776665543 2346888877653
No 90
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=63.32 E-value=4.1 Score=32.70 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=27.3
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcC---CCcEEEEeCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQ 104 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~---~~~i~f~~iq 104 (210)
.++|||=.||+|-.....|.+... .-+|.|.|+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 689999999999999988876542 4578888775
No 91
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=63.22 E-value=12 Score=28.51 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=27.5
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ 106 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~ 106 (210)
+||+=..|+.|.+..+||...+. .+.++++...
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i--~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEANGI--EYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCC--ceEEEecCCC
Confidence 68899999999999999987643 6888888653
No 92
>PRK10996 thioredoxin 2; Provisional
Probab=63.08 E-value=40 Score=26.30 Aligned_cols=62 Identities=10% Similarity=0.179 Sum_probs=41.6
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEE
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y 136 (210)
.+.||-.+|+.|......+.... ..+.+.|..+......++.+.+|+.. . -.+++++ +|+..
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~--~-Ptlii~~-~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRS--I-PTIMIFK-NGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCc--c-CEEEEEE-CCEEE
Confidence 67899999999999877765532 34568886665554556667777742 2 3556665 57754
No 93
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=62.93 E-value=43 Score=23.07 Aligned_cols=70 Identities=7% Similarity=-0.130 Sum_probs=38.5
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccch-hHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHH
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAE-PYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVL 146 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~-~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il 146 (210)
++||...|+.|.+..-.+...+. .+.+..+.-..+. .--+...+++. ..+-++..+|.....+.||..-+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl--~~e~~~v~~~~~~~~~~~~~~inP~---g~vP~L~~~g~~l~Es~aI~~yL 72 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL--RCEEYDVSLPLSEHNEPWFMRLNPT---GEVPVLIHGDNIICDPTQIIDYL 72 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC--CCEEEEecCCcCccCCHHHHHhCcC---CCCCEEEECCEEEEcHHHHHHHh
Confidence 57888889999886666655443 3444443221110 00012233332 34433344689999999987643
No 94
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=62.28 E-value=37 Score=23.19 Aligned_cols=69 Identities=7% Similarity=-0.108 Sum_probs=38.5
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc---cchhHHHhcCCCHHHhhccEEEEE-CCCeEEEcHHHHHHHHH
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ---AAEPYLRLCGLDREDVLRRFLFVE-GPGLYHQASTAALKVLS 147 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~---~~~~~L~~~gi~~e~~~~~l~vv~-~~G~~y~GsdAvl~il~ 147 (210)
+++|-..|+.|.+..-.+...+. .+.+..+... ....+ ..+++. ..+-++. ++|.....+.||.+-+.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi--~~~~~~v~~~~~~~~~~~---~~~nP~---~~vP~L~~~~g~~l~es~aI~~yL~ 73 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGL--DVEIVDFQPGKENKTPEF---LKKFPL---GKVPAFEGADGFCLFESNAIAYYVA 73 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCC--ceEEEecccccccCCHHH---HHhCCC---CCCCEEEcCCCCEEeeHHHHHHHHh
Confidence 57788889988886666654443 3444444322 11122 122332 3343333 45888899999887654
Q ss_pred h
Q 028306 148 H 148 (210)
Q Consensus 148 ~ 148 (210)
.
T Consensus 74 ~ 74 (75)
T cd03044 74 N 74 (75)
T ss_pred h
Confidence 3
No 95
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=61.79 E-value=7.4 Score=30.16 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=20.6
Q ss_pred CCCCCCCCeEEEEcCCCcccHHHHHHHH
Q 028306 63 MEPSLLQPGVVIYDGVCHLCHGGVKWVI 90 (210)
Q Consensus 63 ~~p~~~~~~~V~YDG~CplC~~~v~~L~ 90 (210)
+.|......++|+|=.||.|.+....+.
T Consensus 8 G~~~a~~~v~~f~d~~Cp~C~~~~~~~~ 35 (162)
T PF13462_consen 8 GNPDAPITVTEFFDFQCPHCAKFHEELE 35 (162)
T ss_dssp S-TTTSEEEEEEE-TTSHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEECCCCHhHHHHHHHHh
Confidence 3455556789999999999999877664
No 96
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=61.49 E-value=47 Score=22.36 Aligned_cols=69 Identities=9% Similarity=-0.052 Sum_probs=39.3
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCcc----chhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHH
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA----AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVL 146 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~----~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il 146 (210)
.++|+...|+.|.+..-.+...+. .+.+..+.... ...+. .+++. ..+-++..+|.....+.|+++-+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i--~~~~~~~~~~~~~~~~~~~~---~~~P~---~~vP~l~~~g~~l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV--DYELVPVDLTKGEHKSPEHL---ARNPF---GQIPALEDGDLKLFESRAITRYL 73 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC--CcEEEEeCccccccCCHHHH---hhCCC---CCCCEEEECCEEEEcHHHHHHHH
Confidence 467778889999997766665543 34444433211 11211 22332 33333334588999999988765
Q ss_pred H
Q 028306 147 S 147 (210)
Q Consensus 147 ~ 147 (210)
.
T Consensus 74 ~ 74 (76)
T cd03053 74 A 74 (76)
T ss_pred h
Confidence 3
No 97
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=61.32 E-value=15 Score=27.88 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=28.0
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ 106 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~ 106 (210)
.+||+-..|+.|.+..+||...+ -.+.++++...
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~g--i~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQ--IPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC--CceEEEecCCC
Confidence 47899999999999999998764 37888888543
No 98
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=60.37 E-value=14 Score=29.05 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=27.7
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ 106 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~ 106 (210)
.+||.-..|+.|.+..+||...+. .+.++++...
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi--~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDI--PFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC--CcEEeeccCC
Confidence 578999999999999999987653 6788887543
No 99
>PTZ00062 glutaredoxin; Provisional
Probab=58.97 E-value=30 Score=29.54 Aligned_cols=70 Identities=9% Similarity=0.098 Sum_probs=40.6
Q ss_pred CeEEEEcC-----CCcccHHHHHHHHhhcCCCcEEEEeCCCccc-hhHHHhc-CCCHHHhhccEEEEECCCeEEEcHHHH
Q 028306 70 PGVVIYDG-----VCHLCHGGVKWVIRADKYRKIKFCCLQSQAA-EPYLRLC-GLDREDVLRRFLFVEGPGLYHQASTAA 142 (210)
Q Consensus 70 ~~~V~YDG-----~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~-~~~L~~~-gi~~e~~~~~l~vv~~~G~~y~GsdAv 142 (210)
+.+||-=| .||+|++.+++|.... -.+...++..... ++.+... |. .++-.+-=+|+.+.|.+-+
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~--i~y~~~DI~~d~~~~~~l~~~sg~------~TvPqVfI~G~~IGG~d~l 185 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSG--VKYETYNIFEDPDLREELKVYSNW------PTYPQLYVNGELIGGHDII 185 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcC--CCEEEEEcCCCHHHHHHHHHHhCC------CCCCeEEECCEEEcChHHH
Confidence 44555444 7999999999998654 3566777764421 1212111 11 1221122258999999887
Q ss_pred HHHHH
Q 028306 143 LKVLS 147 (210)
Q Consensus 143 l~il~ 147 (210)
..+..
T Consensus 186 ~~l~~ 190 (204)
T PTZ00062 186 KELYE 190 (204)
T ss_pred HHHHH
Confidence 76543
No 100
>PRK12559 transcriptional regulator Spx; Provisional
Probab=58.55 E-value=31 Score=27.16 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=26.2
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQ 104 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iq 104 (210)
.+||.-..|+.|.+..+||...+ -.+.++++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~g--i~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQ--IDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC--CCeEEEEee
Confidence 57899999999999999998764 356777764
No 101
>PRK10026 arsenate reductase; Provisional
Probab=58.36 E-value=23 Score=28.53 Aligned_cols=52 Identities=4% Similarity=0.060 Sum_probs=35.6
Q ss_pred CCeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc--cc---hhHHHhcCCCHHHh
Q 028306 69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ--AA---EPYLRLCGLDREDV 122 (210)
Q Consensus 69 ~~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~--~~---~~~L~~~gi~~e~~ 122 (210)
+..+||.-..|.-|++..+||..++ -.+.|.++-.. .. ..+++..|.+.+++
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~g--i~~~~~d~~~~ppt~~eL~~~l~~~g~~~~~l 58 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSG--TEPTIIHYLETPPTRDELVKLIADMGISVRAL 58 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCC--CCcEEEeeeCCCcCHHHHHHHHHhCCCCHHHH
Confidence 4578999999999999999998764 46778776432 22 23344556554443
No 102
>PRK09381 trxA thioredoxin; Provisional
Probab=58.31 E-value=21 Score=25.96 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=38.6
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEE
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y 136 (210)
-.+.||-.+|+.|......+.... ..+.+.|..+.......+...+++. .. -.+.++. +|+..
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~-Pt~~~~~-~G~~~ 88 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIR--GI-PTLLLFK-NGEVA 88 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCC--cC-CEEEEEe-CCeEE
Confidence 467789999999999987775432 2344555555444334445566654 23 3566664 46644
No 103
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.90 E-value=16 Score=26.95 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc
Q 028306 69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ 106 (210)
Q Consensus 69 ~~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~ 106 (210)
.++++||-..||=|...+..+.+... ...|+.|.+.
T Consensus 2 skp~lfgsn~Cpdca~a~eyl~rl~v--~yd~VeIt~S 37 (85)
T COG4545 2 SKPKLFGSNLCPDCAPAVEYLERLNV--DYDFVEITES 37 (85)
T ss_pred CCceeeccccCcchHHHHHHHHHcCC--Cceeeehhhh
Confidence 57799999999999999999988653 6788888765
No 104
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=56.72 E-value=18 Score=25.67 Aligned_cols=61 Identities=10% Similarity=0.058 Sum_probs=37.3
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc--CC---CcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCe
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD--KY---RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL 134 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d--~~---~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~ 134 (210)
-.+.||-.+|+-|......+.+.. .. ..+.|..+.......+.+.+++. .+ -+++++.+ |.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~-Pt~~~~~~-g~ 84 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVR--GY-PTLLLFKD-GE 84 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCC--cC-CEEEEEeC-CC
Confidence 477899999999999877664431 11 25666666544334445566654 23 35666644 44
No 105
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=54.96 E-value=57 Score=22.18 Aligned_cols=69 Identities=12% Similarity=-0.115 Sum_probs=37.8
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHH
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVL 146 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il 146 (210)
.+++|-..|+.|.+..-.+...+. .+....+......+ +...+++- ..+-++..+|..+..+.|+++-+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i--~~e~~~v~~~~~~~--~~~~~~p~---~~vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGI--SWEEERVTYEEWQE--SLKPKMLF---GQLPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCC--CCEEEEecHHHhhh--hhhccCCC---CCCCEEEECCEEEEcHHHHHHHH
Confidence 467777779999876666655543 23433332111111 11123321 34434444578899999988754
No 106
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=54.91 E-value=32 Score=23.17 Aligned_cols=56 Identities=13% Similarity=0.066 Sum_probs=34.0
Q ss_pred CCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHH
Q 028306 78 VCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLS 147 (210)
Q Consensus 78 ~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~ 147 (210)
.|++|.+...+++..+. .+....+.... +++. ..+=++..+|.++.++.|++.-+.
T Consensus 15 ~sp~~~~v~~~L~~~~i--~~~~~~~~~~~---------~~p~---g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 15 LSPECLKVETYLRMAGI--PYEVVFSSNPW---------RSPT---GKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCHHHHHHHHHHHhCCC--ceEEEecCCcc---------cCCC---cccCEEEECCEEEcCHHHHHHHHh
Confidence 69999998888865443 34444433211 2221 244444456899999999877553
No 107
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=54.75 E-value=38 Score=25.21 Aligned_cols=63 Identities=11% Similarity=0.010 Sum_probs=38.7
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc---CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEE
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d---~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y 136 (210)
-.+.||-.+|+.|......+.+.. ...++.|..+.......+...+|+. .. -+++++. +|+..
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~--~~-Pt~~i~~-~g~~~ 92 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAH--SV-PAIVGII-NGQVT 92 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCc--cC-CEEEEEE-CCEEE
Confidence 367799999999988766554332 1224666666544444555677774 22 3566665 46554
No 108
>PTZ00056 glutathione peroxidase; Provisional
Probab=54.03 E-value=40 Score=28.20 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=24.9
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc---CCCcEEEEeCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQ 104 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d---~~~~i~f~~iq 104 (210)
++.++=.+|+.|..++..|.++. ....+.++.+.
T Consensus 43 lv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~ 79 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFP 79 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEec
Confidence 56788899999999888776653 23347777775
No 109
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=53.85 E-value=72 Score=26.39 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=39.8
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEE-CCCeEEEcHHHHHHHHHhC
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVE-GPGLYHQASTAALKVLSHL 149 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~-~~G~~y~GsdAvl~il~~L 149 (210)
++|+-..||+|.+..-.|..... .+..+++........++ +++ ...+=++. ++|.++.++.||++-+...
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl--~~e~~~~~~~~~~~~~~---~np---~g~vP~l~~~~g~~l~es~~I~~yL~~~ 71 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNI--PVEKHVLLNDDEETPIR---MIG---AKQVPILQKDDGRAMPESLDIVAYFDKL 71 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCC--CeEEEECCCCcchhHHH---hcC---CCCcceEEeeCCeEeccHHHHHHHHHHh
Confidence 36777789999986666654432 34444443322111111 111 13442332 5689999999999866643
No 110
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=53.77 E-value=31 Score=26.30 Aligned_cols=33 Identities=3% Similarity=-0.027 Sum_probs=26.9
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS 105 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs 105 (210)
.++|+-..|.-|.+..+||...+ -.+.|+++-.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~--i~~~~~di~~ 33 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKG--IEPEVVKYLK 33 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCC--CCeEEEeccC
Confidence 36899999999999999998753 4677887643
No 111
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=53.68 E-value=27 Score=23.88 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=25.8
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ 106 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~ 106 (210)
+||-=..||.|.+..++|..++ -.+.++++..+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~~--i~~~~~di~~~ 34 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEHG--IAFEEINIDEQ 34 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHCC--CceEEEECCCC
Confidence 4566678999999999998654 36788888765
No 112
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=52.72 E-value=36 Score=31.88 Aligned_cols=74 Identities=9% Similarity=0.061 Sum_probs=44.2
Q ss_pred CCeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccc-hhHHHhcC-C--CHHHhhccEEEEECCCeEEEcHHHHHH
Q 028306 69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAA-EPYLRLCG-L--DREDVLRRFLFVEGPGLYHQASTAALK 144 (210)
Q Consensus 69 ~~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~-~~~L~~~g-i--~~e~~~~~l~vv~~~G~~y~GsdAvl~ 144 (210)
.+.+||--..||.|.+..++|.++. -.+..+++..... .+..+..+ . ....-..++-.+--+|..+.|.+.+..
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~g--i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGAND--IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCC--CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 4678999999999999999998765 3667788864422 12111111 0 000001233222225788999988765
No 113
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=52.23 E-value=32 Score=26.10 Aligned_cols=33 Identities=6% Similarity=0.020 Sum_probs=26.8
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS 105 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs 105 (210)
.+||+-..|.-|.+..+||...+ -.+.|+++..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~--i~~~~~di~~ 33 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAG--IEPEIVEYLK 33 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCC--CCeEEEeccc
Confidence 36899999999999999998764 4677887743
No 114
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=52.19 E-value=22 Score=26.18 Aligned_cols=58 Identities=12% Similarity=0.226 Sum_probs=37.0
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc-CCCcEEEEeCCCc-cchhHHHhcCCCHHHhhccEEEEEC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD-KYRKIKFCCLQSQ-AAEPYLRLCGLDREDVLRRFLFVEG 131 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d-~~~~i~f~~iqs~-~~~~~L~~~gi~~e~~~~~l~vv~~ 131 (210)
.+.||=.+|+.|......+.+.. ..+.+.|..+... ....+...+++. .+ -++.++++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~--~~-PT~~lf~~ 81 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVV--GF-PTILLFNS 81 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCe--ec-CEEEEEcC
Confidence 67789999999999988776543 2334666666443 234455667764 22 46666654
No 115
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=51.51 E-value=15 Score=26.01 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=36.1
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcC----CCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEEC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADK----YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~----~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~ 131 (210)
-.+.||..+|+.|......+.+... ...+.|..+..... ++...+++ ... -+++++..
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~--~~~-Pt~~~~~~ 82 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVV--DGF-PTILFFPA 82 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccC--CCC-CEEEEEcC
Confidence 3577999999999998887765542 23577776655432 23344554 232 35666644
No 116
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=51.08 E-value=33 Score=24.89 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=35.5
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc-----CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEEC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD-----KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d-----~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~ 131 (210)
-.+.||-.+|+.|......+.+.. ....+.+..+.......+.+.+++.. . -+++++++
T Consensus 18 vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~--~-Pt~~l~~~ 81 (104)
T cd03000 18 WLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRG--Y-PTIKLLKG 81 (104)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCcc--c-cEEEEEcC
Confidence 367789999999998887665432 12346665554333334455667642 3 45666643
No 117
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=50.49 E-value=22 Score=28.09 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=26.9
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS 105 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs 105 (210)
.+||.-..|+.|.+..+||..++ -.+.++++..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~--i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQ--LSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcC--CCeEEEECCC
Confidence 46888999999999999998764 3678888753
No 118
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=50.41 E-value=38 Score=29.42 Aligned_cols=66 Identities=11% Similarity=0.023 Sum_probs=39.9
Q ss_pred CCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHHhC
Q 028306 77 GVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLSHL 149 (210)
Q Consensus 77 G~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~~L 149 (210)
|.||+|.+..-.+......=.+..+++... ...++ .+++. ..+-++..+|..+..+.||..-+...
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl---~inP~---g~vPvL~~~g~~l~ES~aI~eYL~e~ 82 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQ---NLAPG---THPPFLTYNTEVKTDVNKIEEFLEET 82 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHH---HHCcC---CCCCEEEECCEEeecHHHHHHHHHHH
Confidence 789999998888865443223333443322 12332 23332 34444444689999999999977744
No 119
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=50.36 E-value=41 Score=29.56 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=40.0
Q ss_pred cCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHHhC
Q 028306 76 DGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLSHL 149 (210)
Q Consensus 76 DG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~~L 149 (210)
-|.||+|.+..-.|......-.+..+++... ...+ ..+++. ..+=++..+|.++..+.||..-+...
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~-~~~f---l~iNP~---GkVPvL~~d~~~L~ES~aI~~YL~e~ 136 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNK-PEWF---LKISPE---GKVPVVKLDEKWVADSDVITQALEEK 136 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcC-CHHH---HhhCCC---CCCCEEEECCEEEecHHHHHHHHHHH
Confidence 3559999998888876654434444555432 2222 234443 35544444567888899988866544
No 120
>PF09816 EAF: RNA polymerase II transcription elongation factor; InterPro: IPR019194 This entry represents the N-terminal domain of ELL-associated factor (Eaf) proteins, which act as transcriptional transactivators of ELL and ELL2 RNA Polymerase II (Pol II) transcriptional elongation factors [, , , ]. Eaf proteins form a stable heterodimer complex with ELL proteins to facilitate the binding of RNA polymerase II to activate transcription elongation. ELL and EAF1 are components of Cajal bodies, which have a role in leukemogenesis []. EAF1 also has the capacity to interact with ELL1 and ELL2. The N terminus of approx 120 of EAF1 has a region of high serine, aspartic acid, and glutamic acid residues [, ].
Probab=49.85 E-value=27 Score=26.61 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=26.7
Q ss_pred CCCccCCCCcccccccccccccccccCCCCCCCCC----CC-CCCCCCCCeEEEEcCC
Q 028306 26 PSPADVVPGVAADVADVTGADDLVYTEPPVSSTVK----PA-MEPSLLQPGVVIYDGV 78 (210)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~p~~~~~~~V~YDG~ 78 (210)
|+-++......+.+.+-+.+-.|.+..++.+.+.. .| ..|..+...+++||++
T Consensus 30 P~S~d~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~f~G~~~~~~~~ecVLifD~~ 87 (109)
T PF09816_consen 30 PASVDTSKPGTLYVGSSNDEYTLTLPNPNGSGNNETYVFKGSQRPSKEKECVLIFDPE 87 (109)
T ss_pred CCCCCCCCCeEEEecCCCCeEEEEEeCCCCCCCcccEEEEeccCCCCCcEEEEEEECC
Confidence 55666777777777722222233332222221111 12 4555556778888765
No 121
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=49.82 E-value=70 Score=23.22 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=37.9
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc--CC-CcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeE
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD--KY-RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY 135 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d--~~-~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~ 135 (210)
.+.||=.+|+-|......+.+.. .. ..+.|.-+..+ ..++.+.+++..- -+++++. +|+.
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~---Pt~~~~~-~g~~ 83 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCE---PTFLFYK-NGEL 83 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcC---cEEEEEE-CCEE
Confidence 57899999999999888776542 22 23566655444 3345567776532 3566665 4653
No 122
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=48.65 E-value=66 Score=22.69 Aligned_cols=46 Identities=11% Similarity=0.160 Sum_probs=32.7
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcC--CCcEEEEeCCCccchhHHHhcCCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLD 118 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~--~~~i~f~~iqs~~~~~~L~~~gi~ 118 (210)
.++|==-.|++|......|..... .=.+..++|.++ .++.+.+|..
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d--~~l~~~Y~~~ 49 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED--PELFEKYGYR 49 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT--HHHHHHSCTS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC--HHHHHHhcCC
Confidence 455556789999999999986543 335899999865 3466778743
No 123
>PTZ00102 disulphide isomerase; Provisional
Probab=48.40 E-value=61 Score=29.93 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=47.4
Q ss_pred CeEEEEcCCCcccHHHHHHHHhh-----cCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCe-EEEc---HH
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRA-----DKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL-YHQA---ST 140 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~-----d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~-~y~G---sd 140 (210)
-.+.||..+|+.|.+....+.+. +....+.|..+.......+.+.+|+.. . -+++++.+++. .|.| .+
T Consensus 52 ~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~--~-Pt~~~~~~g~~~~y~g~~~~~ 128 (477)
T PTZ00102 52 VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRG--Y-PTIKFFNKGNPVNYSGGRTAD 128 (477)
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCc--c-cEEEEEECCceEEecCCCCHH
Confidence 47889999999999887655432 223468888776555556667777753 2 46777765332 2444 44
Q ss_pred HHHHHHHhC
Q 028306 141 AALKVLSHL 149 (210)
Q Consensus 141 Avl~il~~L 149 (210)
.+...+...
T Consensus 129 ~l~~~l~~~ 137 (477)
T PTZ00102 129 GIVSWIKKL 137 (477)
T ss_pred HHHHHHHHh
Confidence 455544443
No 124
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=47.88 E-value=22 Score=28.44 Aligned_cols=34 Identities=3% Similarity=-0.109 Sum_probs=26.7
Q ss_pred EEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCC
Q 028306 72 VVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQS 105 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs 105 (210)
.++||=.||+|--....|.+.- ..-.|.|.|+.-
T Consensus 2 ~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~l 37 (192)
T cd03022 2 DFYFDFSSPYSYLAHERLPALAARHGATVRYRPILL 37 (192)
T ss_pred eEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeeeH
Confidence 5899999999999999887754 234678888743
No 125
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=47.65 E-value=44 Score=24.11 Aligned_cols=61 Identities=16% Similarity=0.068 Sum_probs=37.1
Q ss_pred eEEEEcCCCcccHHHHHHH------HhhcCCCcEEEEeCCCcc----chhHHHhcCCCHHHhhccEEEEEC-CCeE
Q 028306 71 GVVIYDGVCHLCHGGVKWV------IRADKYRKIKFCCLQSQA----AEPYLRLCGLDREDVLRRFLFVEG-PGLY 135 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L------~~~d~~~~i~f~~iqs~~----~~~~L~~~gi~~e~~~~~l~vv~~-~G~~ 135 (210)
.+.||=.+|+.|......+ .... .+++.|+.+.-.. ...+.+.+|+.. . -.++++++ +|+.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~~~~~i~~--~-Pti~~~~~~~g~~ 86 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAAL-KKDVVLLRADWTKNDPEITALLKRFGVFG--P-PTYLFYGPGGEPE 86 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHH-hCCeEEEEEecCCCCHHHHHHHHHcCCCC--C-CEEEEECCCCCCC
Confidence 5678888999999987544 2221 2267766554322 345566777653 2 46777775 5664
No 126
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=47.52 E-value=97 Score=26.71 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=42.3
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEE
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y 136 (210)
-.+.||=.+|+.|......+.+.. ..+.+.|..+.......+.+.+++.. . -++++++ +|+.+
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~--~-PTl~~f~-~G~~v 119 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKG--Y-PTLLLFD-KGKMY 119 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCc--C-CEEEEEE-CCEEE
Confidence 478899999999999888775532 34567777666555555666777752 2 3566665 36654
No 127
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=47.42 E-value=66 Score=26.00 Aligned_cols=66 Identities=14% Similarity=0.054 Sum_probs=37.6
Q ss_pred CCcccHHHHHHHHhhcCCCcEEEEeCCCcc--chhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHH
Q 028306 78 VCHLCHGGVKWVIRADKYRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLS 147 (210)
Q Consensus 78 ~CplC~~~v~~L~~~d~~~~i~f~~iqs~~--~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~ 147 (210)
.|+.|++...+|..+.. .+.-.++.... .+++.+..|-.... .++-.+--+|+++.|.+.+.++..
T Consensus 15 t~~~C~~ak~iL~~~~V--~~~e~DVs~~~~~~~EL~~~~g~~~~~--~tvPqVFI~G~~IGG~del~~L~e 82 (147)
T cd03031 15 TFEDCNNVRAILESFRV--KFDERDVSMDSGFREELRELLGAELKA--VSLPRVFVDGRYLGGAEEVLRLNE 82 (147)
T ss_pred cChhHHHHHHHHHHCCC--cEEEEECCCCHHHHHHHHHHhCCCCCC--CCCCEEEECCEEEecHHHHHHHHH
Confidence 69999999999987643 56777775432 12211111210000 122122225899999998777643
No 128
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=47.10 E-value=84 Score=20.98 Aligned_cols=70 Identities=14% Similarity=-0.062 Sum_probs=37.6
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHH
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVL 146 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il 146 (210)
++++|...|+.|.+..-.+..... .+..+.+....... .....+++. ..+-++..+|.....+.|+..-+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi--~~e~~~~~~~~~~~-~~~~~~~p~---~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGV--EYEDVRITYEEWPE-LDLKPTLPF---GQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCC--CcEEEEeCHHHhhh-hhhccCCcC---CCCCEEEECCEEEEecHHHHHHh
Confidence 367888889999986655554433 34444332211111 011223332 33433334578889999987654
No 129
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=46.67 E-value=38 Score=25.48 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=36.1
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc-----CCCcEEEEeCCC--ccchhHHHhcCCCHHHhhccEEEEEC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD-----KYRKIKFCCLQS--QAAEPYLRLCGLDREDVLRRFLFVEG 131 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d-----~~~~i~f~~iqs--~~~~~~L~~~gi~~e~~~~~l~vv~~ 131 (210)
-.+.||-.+|+.|......+.+.. ..+.+.|..+.. .....+.+.+|+. .. -.+.++.+
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~--~~-Pt~~lf~~ 87 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVT--GY-PTLRYFPP 87 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCC--CC-CEEEEECC
Confidence 356789999999999877765532 234577776642 2223445566664 22 35666643
No 130
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=45.72 E-value=52 Score=23.42 Aligned_cols=62 Identities=8% Similarity=-0.001 Sum_probs=38.7
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc---CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeE
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY 135 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d---~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~ 135 (210)
..+.||=.+|+.|......+.+.. ....+.|..+.......+...+++.. . -+++++ .+|+.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~--~-Pt~~~~-~~g~~ 83 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTA--L-PTIYHA-KDGVF 83 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcc--c-CEEEEe-CCCCE
Confidence 478899999999999887776543 22356666665444444555666642 2 345554 44653
No 131
>PRK10387 glutaredoxin 2; Provisional
Probab=45.50 E-value=1.6e+02 Score=23.82 Aligned_cols=70 Identities=11% Similarity=0.188 Sum_probs=41.0
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEE-ECCCeEEEcHHHHHHHHHhC
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFV-EGPGLYHQASTAALKVLSHL 149 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv-~~~G~~y~GsdAvl~il~~L 149 (210)
++|+-..||.|.+..-.+..... .++.+.+.......-++ +++ ...+=++ .++|.+...|.||+.-+...
T Consensus 2 ~Ly~~~~sp~~~kv~~~L~~~gi--~y~~~~~~~~~~~~~~~---~~p---~~~VPvL~~~~g~~l~eS~aI~~yL~~~ 72 (210)
T PRK10387 2 KLYIYDHCPFCVKARMIFGLKNI--PVELIVLANDDEATPIR---MIG---QKQVPILQKDDGSYMPESLDIVHYIDEL 72 (210)
T ss_pred EEEeCCCCchHHHHHHHHHHcCC--CeEEEEcCCCchhhHHH---hcC---CcccceEEecCCeEecCHHHHHHHHHHh
Confidence 67888899999996555544432 34444443221111011 111 2345343 55789999999999977654
No 132
>PLN02378 glutathione S-transferase DHAR1
Probab=45.36 E-value=54 Score=27.17 Aligned_cols=66 Identities=12% Similarity=0.169 Sum_probs=41.2
Q ss_pred cCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHHh
Q 028306 76 DGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLSH 148 (210)
Q Consensus 76 DG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~~ 148 (210)
=|.||+|.+..-.|......-.+..+++... ...+++ +++. ..+=+++.+|.++..|.||+.-+..
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~---inP~---G~VPvL~~~~~~l~ES~aI~~YL~~ 82 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLD---ISPQ---GKVPVLKIDDKWVTDSDVIVGILEE 82 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHH---hCCC---CCCCEEEECCEEecCHHHHHHHHHH
Confidence 3569999997777766555455666666543 223332 3332 4454455567788899999886654
No 133
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=45.06 E-value=35 Score=25.69 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=26.8
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS 105 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs 105 (210)
.+||.-..|+-|.+...||...+ -.+.++++-.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~--i~~~~~di~~ 33 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARG--VAYTFHDYRK 33 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcC--CCeEEEeccc
Confidence 36899999999999999998664 4677877754
No 134
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=44.45 E-value=13 Score=23.35 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=14.1
Q ss_pred CCCCCeEEEEcCCCcccH
Q 028306 66 SLLQPGVVIYDGVCHLCH 83 (210)
Q Consensus 66 ~~~~~~~V~YDG~CplC~ 83 (210)
...+.++++|+|....++
T Consensus 3 ~~~~qLTIfY~G~V~Vfd 20 (36)
T PF06200_consen 3 PETAQLTIFYGGQVCVFD 20 (36)
T ss_pred CCCCcEEEEECCEEEEeC
Confidence 345679999999987765
No 135
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=43.52 E-value=36 Score=23.91 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=26.5
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc---C-CCcEEEEeCCCcc
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD---K-YRKIKFCCLQSQA 107 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d---~-~~~i~f~~iqs~~ 107 (210)
.+.|+..+|+-|.+++..|..+. . .+++.++.+....
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~ 45 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDE 45 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence 46789999999999999887643 1 4677777776653
No 136
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=43.49 E-value=29 Score=26.25 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=25.9
Q ss_pred EEEE-cCCCcccHHHHHHHHhhcC---CCcEEEEeCCCccc
Q 028306 72 VVIY-DGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQAA 108 (210)
Q Consensus 72 ~V~Y-DG~CplC~~~v~~L~~~d~---~~~i~f~~iqs~~~ 108 (210)
+++| -..|+.|...+.-|.+.-. ...+.++.+.....
T Consensus 28 l~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 28 VVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred EEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 4444 7799999999998876532 24577887766543
No 137
>PHA02540 61 DNA primase; Provisional
Probab=43.13 E-value=60 Score=29.98 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=48.6
Q ss_pred CCeEEEEcCCCcccHHHHHHHHhh-cCCCcEEEEeCC---CccchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHH
Q 028306 69 QPGVVIYDGVCHLCHGGVKWVIRA-DKYRKIKFCCLQ---SQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALK 144 (210)
Q Consensus 69 ~~~~V~YDG~CplC~~~v~~L~~~-d~~~~i~f~~iq---s~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~ 144 (210)
.+.++.||++.+- .+.++-+..+ +..-++...+.. .....+++...|.+.+++++ +++ .+.++|.+|-++
T Consensus 257 ~~vvl~~D~Da~~-~at~r~~~~l~~~g~~v~v~~~~~~~~kDpde~i~~~G~~~~~~~~---~i~--~n~~~gl~ak~~ 330 (337)
T PHA02540 257 DTRVWVLDNEPRH-PDTIKRISKLIDAGEKVVIWDKCPWPSKDINDMIMKGGATPEDIME---YIK--SNTYQGLMAKLR 330 (337)
T ss_pred ceEEEEECCchhH-HHHHHHHHHHHHCCCeEEEecCCCCCCcCHHHHHHhcCCCHHHHHH---HHH--HccccHHHHHHH
Confidence 5789999999664 6667777665 445567666654 23345567788988888653 333 367899999776
Q ss_pred H
Q 028306 145 V 145 (210)
Q Consensus 145 i 145 (210)
+
T Consensus 331 ~ 331 (337)
T PHA02540 331 L 331 (337)
T ss_pred h
Confidence 6
No 138
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=43.00 E-value=29 Score=22.57 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=24.2
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS 105 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs 105 (210)
.++|+-..|+.|.+....+...+ -.+..+++..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~--i~~~~~~i~~ 34 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERG--IPFEEVDVDE 34 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCC--CCeEEEeCCC
Confidence 56777788999999888886543 3566777754
No 139
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=42.87 E-value=1e+02 Score=25.23 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=41.5
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc-CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEE
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD-KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQ 137 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d-~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~ 137 (210)
.+.||-.+|+-|......|..+. ....+.|+-+..... .+...+++. . .-+++++.+ |+...
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~--~-vPTlllyk~-G~~v~ 149 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTD--A-LPALLVYKG-GELIG 149 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCC--C-CCEEEEEEC-CEEEE
Confidence 45589999999998877776554 245688998877643 344556654 2 346666654 77553
No 140
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=42.27 E-value=75 Score=26.55 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=40.1
Q ss_pred CeEEEEc---CCCcccHHHHHHHHhhc-CCC--cEEEEeCCCccchhHHHhcCCCHHHhhccEEEEEC
Q 028306 70 PGVVIYD---GVCHLCHGGVKWVIRAD-KYR--KIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (210)
Q Consensus 70 ~~~V~YD---G~CplC~~~v~~L~~~d-~~~--~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~ 131 (210)
..++|+. .+|+-|......+.... ..+ .+.++.+..+...++.+.+|+.. . -+++++++
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~--~-Pt~~~f~~ 86 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVER--V-PTTIILEE 86 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCc--c-CEEEEEeC
Confidence 3566777 79999999999887663 222 36688887655566667777663 2 46666654
No 141
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=42.22 E-value=25 Score=26.88 Aligned_cols=33 Identities=12% Similarity=0.291 Sum_probs=23.2
Q ss_pred eEEEEcC-CCcccHHHHHHHHhhc---CCCcEEEEeC
Q 028306 71 GVVIYDG-VCHLCHGGVKWVIRAD---KYRKIKFCCL 103 (210)
Q Consensus 71 ~~V~YDG-~CplC~~~v~~L~~~d---~~~~i~f~~i 103 (210)
.+.+|-+ +||.|..++-.+.++. ....+.++-+
T Consensus 32 vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v 68 (146)
T PF08534_consen 32 VVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGV 68 (146)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred EEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEe
Confidence 6778889 9999999998776653 2233444444
No 142
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=41.62 E-value=36 Score=27.80 Aligned_cols=33 Identities=9% Similarity=0.282 Sum_probs=24.1
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQ 104 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iq 104 (210)
.+.||..+|+.|.+++..+.++... .+.++-+.
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~-~~~vi~v~ 104 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQ-GIRVVGMN 104 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHc-CCEEEEEE
Confidence 5668999999999999998776432 34444443
No 143
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=41.55 E-value=58 Score=25.29 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=25.2
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQ 104 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iq 104 (210)
.++|.-..|.-|.+...||..+.. .+.|+++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi--~~~~~~y~ 34 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGI--EYTFIDYL 34 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC--CcEEEEee
Confidence 688999999999999999987654 44555543
No 144
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=41.41 E-value=56 Score=21.26 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=26.5
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ 106 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~ 106 (210)
++|-=-.||.|.+..++|.... -.+.+.++...
T Consensus 2 ~vy~~~~C~~C~~~~~~L~~~~--i~y~~~dv~~~ 34 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKEFLDEKG--IPYEEVDVDED 34 (60)
T ss_dssp EEEESTTSHHHHHHHHHHHHTT--BEEEEEEGGGS
T ss_pred EEEEcCCCcCHHHHHHHHHHcC--CeeeEcccccc
Confidence 4566678999999999997665 36888888776
No 145
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=41.15 E-value=74 Score=24.43 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=27.5
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcC--CCcEEEEeCCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQS 105 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~--~~~i~f~~iqs 105 (210)
.+.||=.+||.|+...-.|.+.-. ...+.++++..
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~ 63 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSEN 63 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCC
Confidence 677899999999999888876542 34588888874
No 146
>PRK11752 putative S-transferase; Provisional
Probab=40.36 E-value=2.4e+02 Score=24.34 Aligned_cols=88 Identities=9% Similarity=0.003 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEcCCCcccHHHHHHHHhh---cC-CCcEEE--EeCCCc--cchhHHHhcCCCHHHhhcc
Q 028306 54 PVSSTVKPAMEPSLLQPGVVIYDGVCHLCHGGVKWVIRA---DK-YRKIKF--CCLQSQ--AAEPYLRLCGLDREDVLRR 125 (210)
Q Consensus 54 ~~~~~~~~~~~p~~~~~~~V~YDG~CplC~~~v~~L~~~---d~-~~~i~f--~~iqs~--~~~~~L~~~gi~~e~~~~~ 125 (210)
|++....-+++|...+++++++ ..|+.|.+..-.|... .. .-.+.+ +++... ...+++ .+++- ..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~Ly~-~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~---~iNP~---Gk 100 (264)
T PRK11752 28 PVAGATHEKTLPVGKHPLQLYS-LGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFV---EINPN---SK 100 (264)
T ss_pred CCCCcchhcccCCCCCCeEEec-CCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHH---hhCCC---CC
Confidence 3433444478888888888777 5699999866666543 11 113333 333221 112222 23332 23
Q ss_pred E-EEEECC---CeEEEcHHHHHHHHHh
Q 028306 126 F-LFVEGP---GLYHQASTAALKVLSH 148 (210)
Q Consensus 126 l-~vv~~~---G~~y~GsdAvl~il~~ 148 (210)
+ .+++++ |.++..|.||+.-+..
T Consensus 101 VP~Lv~~dg~~~~~L~ES~AIl~YL~~ 127 (264)
T PRK11752 101 IPALLDRSGNPPIRVFESGAILLYLAE 127 (264)
T ss_pred CCEEEeCCCCCCeEEEcHHHHHHHHHH
Confidence 3 334443 3688999999886654
No 147
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=40.23 E-value=1.2e+02 Score=20.63 Aligned_cols=56 Identities=13% Similarity=0.014 Sum_probs=32.9
Q ss_pred CCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHH
Q 028306 78 VCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLS 147 (210)
Q Consensus 78 ~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~ 147 (210)
.|++|.+...+|...+. .+.+..+... .+++ ...+-++..+|..+..+.|+++-+.
T Consensus 16 ~sp~~~~v~~~L~~~gi--~~~~~~~~~~---------~~~p---~g~vPvl~~~g~~l~eS~~I~~yL~ 71 (75)
T cd03080 16 LSPFCLKVETFLRMAGI--PYENKFGGLA---------KRSP---KGKLPFIELNGEKIADSELIIDHLE 71 (75)
T ss_pred CCHHHHHHHHHHHHCCC--CcEEeecCcc---------cCCC---CCCCCEEEECCEEEcCHHHHHHHHH
Confidence 47999998777765543 2344333221 1122 1334344446899999999887654
No 148
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=39.95 E-value=1.3e+02 Score=20.88 Aligned_cols=67 Identities=13% Similarity=-0.053 Sum_probs=35.8
Q ss_pred cCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccE-EEEECCCeEEEcHHHHHHHHH
Q 028306 76 DGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTAALKVLS 147 (210)
Q Consensus 76 DG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l-~vv~~~G~~y~GsdAvl~il~ 147 (210)
.+.|++|.+..-.|...+..-.+..++... .........+++. ..+ .+++++|....++.||++-+.
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~--~~~~~~~~~~~p~---~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEYKTVPVEFPD--IPPILGELTSGGF---YTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCCeEEEecCCC--cccccccccCCCC---ceeCeEEECCCCEEeCHHHHHHHHH
Confidence 457999999777776554332333333322 1111111122322 333 334433788999999988654
No 149
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=38.95 E-value=39 Score=27.79 Aligned_cols=32 Identities=6% Similarity=0.148 Sum_probs=22.1
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCC--CcEEEEe
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKY--RKIKFCC 102 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~--~~i~f~~ 102 (210)
.+.||=.+|+.|.+....+.+.... .++.++.
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 4568889999999998888665432 2344443
No 150
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=38.84 E-value=41 Score=27.91 Aligned_cols=35 Identities=14% Similarity=0.016 Sum_probs=27.0
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQ 104 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iq 104 (210)
++-++||=.||+|-=..+.|.+.- ..-.|.|.|++
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~ 38 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVF 38 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 467999999999999988887643 23467888864
No 151
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=38.58 E-value=89 Score=25.66 Aligned_cols=71 Identities=7% Similarity=-0.022 Sum_probs=41.4
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCc-cchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHHhC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLSHL 149 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~-~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~~L 149 (210)
+++|+...|+.|.+..-.|...+. .+..+.+.-. ...+++ .+++. ..+-++..+|.++..+.||+.-+...
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~gl--~~e~~~v~~~~~~~~~~---~~nP~---g~VPvL~~~g~~l~ES~AIl~YL~~~ 82 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEKGV--SVEIEQVEKDNLPQDLI---DLNPY---QSVPTLVDRELTLYESRIIMEYLDER 82 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHCCC--CCEEEeCCcccCCHHHH---HhCCC---CCCCEEEECCEEeeCHHHHHHHHHHh
Confidence 677777789999997766665543 2333333221 122222 23332 34444445688999999998755433
No 152
>PRK15113 glutathione S-transferase; Provisional
Probab=38.50 E-value=1.8e+02 Score=23.93 Aligned_cols=74 Identities=14% Similarity=0.053 Sum_probs=42.0
Q ss_pred CeEEEEcC--CCcccHHHHHHHHhhcCCCcEEEEeCCCc--cchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHH
Q 028306 70 PGVVIYDG--VCHLCHGGVKWVIRADKYRKIKFCCLQSQ--AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKV 145 (210)
Q Consensus 70 ~~~V~YDG--~CplC~~~v~~L~~~d~~~~i~f~~iqs~--~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~i 145 (210)
..++|++. .|+.|.+..-.+...+..=.+..+++... ...++ ..+++- ..+-++..+|..+..+.||+.-
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~---~~~nP~---g~VP~L~~~~~~l~ES~aI~~Y 78 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTY---QGYSLT---RRVPTLQHDDFELSESSAIAEY 78 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHH---HhcCCC---CCCCEEEECCEEEecHHHHHHH
Confidence 36777764 69999886666665544323333333221 11222 233332 3444444458889999999886
Q ss_pred HHhC
Q 028306 146 LSHL 149 (210)
Q Consensus 146 l~~L 149 (210)
+...
T Consensus 79 L~~~ 82 (214)
T PRK15113 79 LEER 82 (214)
T ss_pred HHHH
Confidence 5544
No 153
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=38.08 E-value=34 Score=26.81 Aligned_cols=34 Identities=12% Similarity=-0.025 Sum_probs=25.1
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc---CCCcEEEEeCCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQS 105 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d---~~~~i~f~~iqs 105 (210)
.+.++..+|+ |..++..|.++. ....+.++.+..
T Consensus 26 vl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~ 62 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPC 62 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 4668999999 999998887642 234588887753
No 154
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=38.02 E-value=50 Score=24.75 Aligned_cols=37 Identities=5% Similarity=0.056 Sum_probs=24.7
Q ss_pred eEEEE-cCCCcccHHHHHHHHhhcC---CCcEEEEeCCCcc
Q 028306 71 GVVIY-DGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQA 107 (210)
Q Consensus 71 ~~V~Y-DG~CplC~~~v~~L~~~d~---~~~i~f~~iqs~~ 107 (210)
.+++| ..+|+.|...+..|.+.-. .+.+.|+.+..+.
T Consensus 26 ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 26 VLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34445 7899999999888765421 3456777776553
No 155
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=36.93 E-value=57 Score=27.46 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=19.8
Q ss_pred CCCeEEEEcCCCcccHHHHHHHHh
Q 028306 68 LQPGVVIYDGVCHLCHGGVKWVIR 91 (210)
Q Consensus 68 ~~~~~V~YDG~CplC~~~v~~L~~ 91 (210)
+...++|+|-.||+|.....-+.+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHH
Confidence 556899999999999777777765
No 156
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=36.23 E-value=42 Score=27.08 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=23.4
Q ss_pred EEEEcCCCcccHHHHHHHHhhc-C-----CCcEEEEeC
Q 028306 72 VVIYDGVCHLCHGGVKWVIRAD-K-----YRKIKFCCL 103 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d-~-----~~~i~f~~i 103 (210)
.+|||=.||+|--....|.+.- . .-.|.|.|+
T Consensus 2 ~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~ 39 (201)
T cd03024 2 DIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPF 39 (201)
T ss_pred eEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeee
Confidence 5899999999998887776532 1 235677776
No 157
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=36.09 E-value=64 Score=25.91 Aligned_cols=32 Identities=9% Similarity=0.226 Sum_probs=23.2
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCL 103 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~i 103 (210)
.+.||-.+|+.|......+.++... .+.++-+
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l~~~-~~~vi~V 98 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNELAKD-GLPIVGV 98 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHc-CCEEEEE
Confidence 5778999999999998888766432 2444444
No 158
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=35.63 E-value=78 Score=24.51 Aligned_cols=62 Identities=5% Similarity=-0.045 Sum_probs=40.7
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcC--CCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEE
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~--~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y 136 (210)
.+.||-.+|+-|....-.+.+... .+.+.|.-+.-+....+-+.+|+.. + -+++++.+ |+..
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~--i-PTf~~fk~-G~~v 81 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYD--P-PTVMFFFR-NKHM 81 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCC--C-CEEEEEEC-CEEE
Confidence 344899999999998887766542 3445666555555556667788763 2 46666654 6543
No 159
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=35.44 E-value=62 Score=26.14 Aligned_cols=64 Identities=8% Similarity=0.021 Sum_probs=42.1
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcC---CCcEEEEeCCCccchhHHHhcCCCH----HHhhccEEEEECCCeEE
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQAAEPYLRLCGLDR----EDVLRRFLFVEGPGLYH 136 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~---~~~i~f~~iqs~~~~~~L~~~gi~~----e~~~~~l~vv~~~G~~y 136 (210)
.+.||=.+|+-|......+.+... ...+.|..+.-....++.+.+++.. .+. -++++.. +|+..
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~-PT~ilf~-~Gk~v 121 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQL-PTIILFQ-GGKEV 121 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCC-CEEEEEE-CCEEE
Confidence 677899999999999887766532 2358777776665556667777753 112 3555665 35543
No 160
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=35.39 E-value=45 Score=25.16 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=24.2
Q ss_pred eEEEEcCCCcc-cHHHHHHHHhhc----CC--CcEEEEeCCC
Q 028306 71 GVVIYDGVCHL-CHGGVKWVIRAD----KY--RKIKFCCLQS 105 (210)
Q Consensus 71 ~~V~YDG~Cpl-C~~~v~~L~~~d----~~--~~i~f~~iqs 105 (210)
.++||-.+|+. |.+.+..+.+.. .. +++.++.+..
T Consensus 26 vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~ 67 (142)
T cd02968 26 LVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISV 67 (142)
T ss_pred EEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEE
Confidence 56778999996 999888886642 11 2466666653
No 161
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=34.78 E-value=80 Score=23.54 Aligned_cols=30 Identities=17% Similarity=0.416 Sum_probs=22.0
Q ss_pred EEcCCCcccHHHHHHHHhhcCCCcEEEEeCCC
Q 028306 74 IYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS 105 (210)
Q Consensus 74 ~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs 105 (210)
|+-..|.-|.+..+||...+ -.+.|+++..
T Consensus 1 Y~~~~C~t~rka~~~L~~~g--i~~~~~d~~k 30 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENG--IEYEFIDYKK 30 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT----EEEEETTT
T ss_pred CcCCCCHHHHHHHHHHHHcC--CCeEeehhhh
Confidence 45678999999999998765 4788999865
No 162
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=34.45 E-value=10 Score=25.11 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=5.6
Q ss_pred cCCCcccHHHH
Q 028306 76 DGVCHLCHGGV 86 (210)
Q Consensus 76 DG~CplC~~~v 86 (210)
+|.||+|.+..
T Consensus 20 ~~~CPlC~r~l 30 (54)
T PF04423_consen 20 KGCCPLCGRPL 30 (54)
T ss_dssp SEE-TTT--EE
T ss_pred CCcCCCCCCCC
Confidence 46899998743
No 163
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=33.93 E-value=46 Score=25.03 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=26.2
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc---CCCcEEEEeCCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQS 105 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d---~~~~i~f~~iqs 105 (210)
.+.||-.+|+.|.+.+..|.++- ....+.++.+.+
T Consensus 27 vl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 27 LLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 67789999999999988776542 234577777754
No 164
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.09 E-value=32 Score=23.86 Aligned_cols=16 Identities=38% Similarity=0.883 Sum_probs=13.3
Q ss_pred cCCCcccHHHHHHHHh
Q 028306 76 DGVCHLCHGGVKWVIR 91 (210)
Q Consensus 76 DG~CplC~~~v~~L~~ 91 (210)
-|.||+|++-++=+.+
T Consensus 43 ~g~CPiCRapi~dvIk 58 (62)
T KOG4172|consen 43 HGCCPICRAPIKDVIK 58 (62)
T ss_pred CCcCcchhhHHHHHHH
Confidence 4899999999887765
No 165
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=32.45 E-value=59 Score=22.57 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=34.7
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEEc
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQA 138 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~G 138 (210)
..| |-..|+.|......+.... ..-.+...++.. ..++ ..+|+..- --.++++ .-.+.|
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~--~~~~-~~ygv~~v----PalvIng-~~~~~G 63 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIED--FEEI-EKYGVMSV----PALVING-KVVFVG 63 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETTT--HHHH-HHTT-SSS----SEEEETT-EEEEES
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccC--HHHH-HHcCCCCC----CEEEECC-EEEEEe
Confidence 345 6666999999888886542 234567777743 3343 67776531 2235543 345777
No 166
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=32.29 E-value=1.6e+02 Score=19.72 Aligned_cols=70 Identities=4% Similarity=-0.126 Sum_probs=36.6
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHH
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLS 147 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~ 147 (210)
+++.-..|+.|.+..-.+..... .+....+....... +...+++. ...+-++..+|.....+.|+++-+.
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl--~~~~~~~~~~~~~~--~~~~~~p~--~~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGV--PYEYVEEDLGNKSE--LLLASNPV--HKKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCC--CCEEEEeCcccCCH--HHHHhCCC--CCCCCEEEECCEEeehHHHHHHHHH
Confidence 45666789999997776765543 23333332211111 11112221 1233333335888999999887654
No 167
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=31.08 E-value=79 Score=24.19 Aligned_cols=33 Identities=9% Similarity=-0.029 Sum_probs=27.1
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS 105 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs 105 (210)
.+||.-..|.-|.+..+||..++ -.+.++++..
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~g--i~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAG--HEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--CCcEEeehhc
Confidence 57899999999999999998764 4677877654
No 168
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=30.30 E-value=75 Score=29.04 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=42.3
Q ss_pred CCeEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEEC
Q 028306 69 QPGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (210)
Q Consensus 69 ~~~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~ 131 (210)
.-.+.+|+.+|+.|.+.+.-+.+.. ..+.+.+..+....-..+.+.+++.-- -++++..+
T Consensus 49 ~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gf---Ptl~~f~~ 110 (383)
T KOG0191|consen 49 PWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGF---PTLKVFRP 110 (383)
T ss_pred ceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccC---cEEEEEcC
Confidence 3479999999999999999887542 244677777766666667778877642 35555544
No 169
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=30.27 E-value=1.2e+02 Score=22.10 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=37.5
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc-CCCcEEEEeCCCccc---hhHHHhcCCCHHHhhccEEEEECCCeE
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD-KYRKIKFCCLQSQAA---EPYLRLCGLDREDVLRRFLFVEGPGLY 135 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d-~~~~i~f~~iqs~~~---~~~L~~~gi~~e~~~~~l~vv~~~G~~ 135 (210)
.+-||=.+|+-|......+.+.. ..+.+.|.-+..+.. ..+.+.+++.. + -.++++. +|+.
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~--~-Pt~~~~~-~G~~ 83 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIE--V-PHFLFYK-DGEK 83 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCc--C-CEEEEEe-CCeE
Confidence 45678889999999888776542 224567776654322 24556677653 2 3566664 5663
No 170
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=30.06 E-value=1.2e+02 Score=21.00 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=25.8
Q ss_pred EEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCCc
Q 028306 72 VVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQ 106 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs~ 106 (210)
+.||=.+||.|......+...- ....+.|..+.+.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~ 39 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDM 39 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 4467799999999977766543 3356889888854
No 171
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=29.99 E-value=1.8e+02 Score=21.20 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=35.2
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc---CCCcEEEEeCCCcc-chhHHH-hcCCCHHHhhccEEEEECC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQA-AEPYLR-LCGLDREDVLRRFLFVEGP 132 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d---~~~~i~f~~iqs~~-~~~~L~-~~gi~~e~~~~~l~vv~~~ 132 (210)
-.+.||=.+|+.|......+.+.. ....+.|..+.... ...+.. .+++. .. -+++++..+
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~--~~-Pti~~f~~~ 88 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLK--SF-PTILFFPKN 88 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCC--cC-CEEEEEcCC
Confidence 467789999999999887665532 22347676655443 223222 35543 22 456666553
No 172
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=29.26 E-value=1.3e+02 Score=25.10 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=39.5
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcC-CCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEE
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~-~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y 136 (210)
.+-||-.+|+-|...-..|..+.. ...+.|+-+..... ...+++. .+ -+++++.+ |...
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~--~l-PTlliyk~-G~~v 165 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDK--NL-PTILVYRN-GDIV 165 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCC--CC-CEEEEEEC-CEEE
Confidence 345899999999998888876653 45689998876532 2445543 22 46666654 6643
No 173
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=28.59 E-value=1.3e+02 Score=22.88 Aligned_cols=65 Identities=5% Similarity=-0.128 Sum_probs=40.1
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc--CCCcEEEEeCCCccchhHH-HhcCCCHHHhhccEEEEECCCe---EEEcH
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYL-RLCGLDREDVLRRFLFVEGPGL---YHQAS 139 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d--~~~~i~f~~iqs~~~~~~L-~~~gi~~e~~~~~l~vv~~~G~---~y~Gs 139 (210)
.+.||=.+|+-|....-.+.... ..+.+.|.-+.......+. ..+++. .+ -++.+..+ |+ .|.|.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~--~~-PTl~lf~~-g~~~~~y~G~ 103 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFF--YF-PVIHLYYR-SRGPIEYKGP 103 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCc--cc-CEEEEEEC-CccceEEeCC
Confidence 57799999999999888776654 2345777777555444444 356654 22 35555543 43 45554
No 174
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.34 E-value=2.5e+02 Score=22.81 Aligned_cols=74 Identities=14% Similarity=-0.004 Sum_probs=46.4
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCC-ccchhHHHhcCCCHHHhhccEE-EEECCCeEEEcHHHHHHHHHh
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS-QAAEPYLRLCGLDREDVLRRFL-FVEGPGLYHQASTAALKVLSH 148 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs-~~~~~~L~~~gi~~e~~~~~l~-vv~~~G~~y~GsdAvl~il~~ 148 (210)
++++|...+++|.+..-.+..+...-++..+++.. ..... ...+++. ..+= +++++|.++..|.||+.-+..
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~---~~~~nP~---gkVPvL~~~~~~~l~ES~AI~~YL~~ 74 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPD---FLALNPL---GKVPALVDDDGEVLTESGAILEYLAE 74 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHH---HHhcCCC---CCCCEEeeCCCCeeecHHHHHHHHHh
Confidence 36788888899999888887665444556666553 22222 2234443 3443 445555578889999987665
Q ss_pred CC
Q 028306 149 LP 150 (210)
Q Consensus 149 Lp 150 (210)
.-
T Consensus 75 ~~ 76 (211)
T COG0625 75 RY 76 (211)
T ss_pred hC
Confidence 53
No 175
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=27.81 E-value=36 Score=29.13 Aligned_cols=13 Identities=38% Similarity=0.841 Sum_probs=9.8
Q ss_pred EEEcCCCcccHHHH
Q 028306 73 VIYDGVCHLCHGGV 86 (210)
Q Consensus 73 V~YDG~CplC~~~v 86 (210)
.+|| .||||.+..
T Consensus 4 YIYd-HCPfcvrar 16 (215)
T COG2999 4 YIYD-HCPFCVRAR 16 (215)
T ss_pred eEec-cChHHHHHH
Confidence 4676 699999943
No 176
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=26.66 E-value=2e+02 Score=19.24 Aligned_cols=68 Identities=10% Similarity=0.110 Sum_probs=37.6
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCCcc----chhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHH
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA----AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLS 147 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs~~----~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~ 147 (210)
++++...++.|.+..-.+...+. .+....+.... ...+. .+++. ..+-++..+|.....+.|+++-+.
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~--~~~~~~v~~~~~~~~~~~~~---~~~p~---~~vP~L~~~~~~l~eS~aI~~Yl~ 73 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKI--PFEECPIDLRKGEQLTPEFK---KINPF---GKVPAIVDGDFTLAESVAILRYLA 73 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCC--CcEEEEecCCCCCcCCHHHH---HhCcC---CCCCEEEECCEEEEcHHHHHHHHH
Confidence 57888889999887666655543 23333332211 11211 22221 333333345788899999877543
No 177
>PLN02412 probable glutathione peroxidase
Probab=26.60 E-value=70 Score=25.70 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=24.3
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc---CCCcEEEEeCCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQS 105 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d---~~~~i~f~~iqs 105 (210)
.+.+|..+|+.|..++..|..+. ....+.++-+..
T Consensus 33 lv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~ 70 (167)
T PLN02412 33 LIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPC 70 (167)
T ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecc
Confidence 34477999999998877766542 233477777764
No 178
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=26.23 E-value=2.7e+02 Score=20.45 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=36.0
Q ss_pred eEEEEcCCCcccHHHHHHHHhh-cC----CCcEEE--EeCCCccchhHHHhcCCCHHHhhccEEEEEC-CCeEE
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRA-DK----YRKIKF--CCLQSQAAEPYLRLCGLDREDVLRRFLFVEG-PGLYH 136 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~-d~----~~~i~f--~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~-~G~~y 136 (210)
.+.++..+|+.|....+-+... +. ...+-+ .++.++.+.++...+++. .+ -.++++++ +|+..
T Consensus 21 lv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~--~~-P~~~~i~~~~g~~l 91 (114)
T cd02958 21 LVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVD--KY-PHIAIIDPRTGEVL 91 (114)
T ss_pred EEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCcc--CC-CeEEEEeCccCcEe
Confidence 4678899999999977643211 10 112222 234444555555555543 22 57788887 67654
No 179
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=25.95 E-value=1.3e+02 Score=22.88 Aligned_cols=36 Identities=6% Similarity=0.070 Sum_probs=23.4
Q ss_pred EEEE-cCCCcccHHHHHHHHhhc---CCCcEEEEeCCCcc
Q 028306 72 VVIY-DGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQA 107 (210)
Q Consensus 72 ~V~Y-DG~CplC~~~v~~L~~~d---~~~~i~f~~iqs~~ 107 (210)
+++| -.+|+.|.+.+.-+.+.- ....+.++.+....
T Consensus 33 l~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 33 LVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred EEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 3344 678999999887776542 12357777776553
No 180
>PRK10853 putative reductase; Provisional
Probab=24.69 E-value=94 Score=23.97 Aligned_cols=33 Identities=9% Similarity=0.129 Sum_probs=26.8
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS 105 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs 105 (210)
.+||.-..|.-|.+..+||..++ -.+.|+++-.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~--i~~~~~d~~k 34 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQG--IDYRFHDYRV 34 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcC--CCcEEeehcc
Confidence 47888999999999999998654 4678887654
No 181
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=24.12 E-value=3.4e+02 Score=20.90 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=43.9
Q ss_pred CCCCeEEEEcCC---CcccHHHHHHHHhhcC--CCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEE
Q 028306 67 LLQPGVVIYDGV---CHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQ 137 (210)
Q Consensus 67 ~~~~~~V~YDG~---CplC~~~v~~L~~~d~--~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~ 137 (210)
.+.+.+|.|=++ ||-|....-.+..... .+++.|.-+......++...+|+.. + -+++++.+ |+...
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~s--I-PTli~fkd-Gk~v~ 97 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLR--T-PALLFFRD-GRYVG 97 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCc--C-CEEEEEEC-CEEEE
Confidence 345667777666 9999998888866543 3567766665555556667787652 2 46667654 76553
No 182
>PF05722 Ustilago_mating: Ustilago B locus mating-type protein; InterPro: IPR008888 This domain consists of several Ustilago mating-type proteins. The b locus of the phytopathogenic fungus Ustilago maydis encodes a multiallelic recognition function that controls the ability of the fungus to form a dikaryon and complete the sexual stage of the life cycle. The b locus has at least 25 alleles and any combination of two different alleles, brought together by mating between haploid cells, allows the fungus to cause disease and undergo sexual development within the plant [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=23.71 E-value=62 Score=28.20 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=15.1
Q ss_pred HhHHHHHHHHHHhhccc
Q 028306 164 RPLRDAVYDYIAKQRYH 180 (210)
Q Consensus 164 ~~L~d~~Y~~VArnRyr 180 (210)
..++||+|+.+|.+..-
T Consensus 77 EKvGdWVYDLvAAsKk~ 93 (286)
T PF05722_consen 77 EKVGDWVYDLVAASKKS 93 (286)
T ss_pred hhhhhHHHHHHHhccCC
Confidence 68999999999998765
No 183
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=23.42 E-value=2.2e+02 Score=18.55 Aligned_cols=69 Identities=13% Similarity=-0.090 Sum_probs=35.0
Q ss_pred EEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCC--ccchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHH
Q 028306 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS--QAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVL 146 (210)
Q Consensus 72 ~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs--~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il 146 (210)
++++...|+.|.+....+...+..=....++... .....+.+ +++. ..+-++..+|.....+.|+++-+
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~---~~p~---~~vP~l~~~~~~l~es~aI~~yL 72 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRA---LNPQ---GLVPTLVIDGLVLTQSLAIIEYL 72 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHH---hCCC---CCCCEEEECCEEEEcHHHHHHHh
Confidence 4566677888877655665554322233333321 11112211 2221 23333334578889999987643
No 184
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=23.37 E-value=55 Score=26.11 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=20.0
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhc
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRAD 93 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d 93 (210)
++.+|||-.||.|-..-..|.+..
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~ 25 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLK 25 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHH
Confidence 467999999999998888887653
No 185
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=22.62 E-value=67 Score=26.72 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCcccHHHH
Q 028306 69 QPGVVIYDGVCHLCHGGV 86 (210)
Q Consensus 69 ~~~~V~YDG~CplC~~~v 86 (210)
...+.|||=.||.|.+.-
T Consensus 39 ~~VvEffdy~CphC~~~~ 56 (207)
T PRK10954 39 PQVLEFFSFYCPHCYQFE 56 (207)
T ss_pred CeEEEEeCCCCccHHHhc
Confidence 348999999999999954
No 186
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=22.56 E-value=1.3e+02 Score=23.57 Aligned_cols=34 Identities=3% Similarity=-0.096 Sum_probs=27.5
Q ss_pred CeEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCC
Q 028306 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS 105 (210)
Q Consensus 70 ~~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs 105 (210)
..+||.-..|.-|.+..+||..++ -.+.|.++-.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~g--i~~~~~d~~~ 35 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASG--HDVEVQDILK 35 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCC--CCcEEEeccC
Confidence 357899999999999999998764 4678887643
No 187
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=22.34 E-value=2.4e+02 Score=21.23 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=37.7
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc----CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCeEEE
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD----KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQ 137 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d----~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~ 137 (210)
.+.||=.+|+-|......+.... ....+..+++..... ...+.+++.-.- .-++++++++|+...
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-~~~~~~~~~g~~-vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-PKDEEFSPDGGY-IPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-chhhhcccCCCc-cceEEEECCCCCCch
Confidence 45578889999999988776531 223566666654421 112333332111 236788887787643
No 188
>PLN02473 glutathione S-transferase
Probab=22.15 E-value=4e+02 Score=21.54 Aligned_cols=71 Identities=11% Similarity=-0.088 Sum_probs=40.6
Q ss_pred eEEEEcCCCcccHHHHHHHHhhcCCCcEEEEeCCC--ccchhHHHhcCCCHHHhhccEEEEECCCeEEEcHHHHHHHHH
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS--QAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTAALKVLS 147 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d~~~~i~f~~iqs--~~~~~~L~~~gi~~e~~~~~l~vv~~~G~~y~GsdAvl~il~ 147 (210)
+++|+-..|+.|.+..-.|..++..-.+..+++.. ....++++ +++ ...+=++..+|.++..+.||..-+.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~---~nP---~g~vP~L~~~g~~l~ES~aI~~YL~ 75 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLL---RQP---FGQVPAIEDGDLKLFESRAIARYYA 75 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHh---hCC---CCCCCeEEECCEEEEehHHHHHHHH
Confidence 46777778998888666666555433333444432 11222222 222 1344333346889999999998665
No 189
>PTZ00102 disulphide isomerase; Provisional
Probab=21.20 E-value=2.4e+02 Score=26.01 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=35.1
Q ss_pred eEEEEcCCCcccHHHHHHHHhhc----CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEECCCe
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRAD----KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL 134 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~d----~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~~G~ 134 (210)
.+.||-.+|+-|......+.+.. ..+.+.+.-+...........+++. .. -+++++..+|.
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~--~~-Pt~~~~~~~~~ 443 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWS--AF-PTILFVKAGER 443 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCc--cc-CeEEEEECCCc
Confidence 57799999999998877665432 1234556555433222222344433 22 46777776544
No 190
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=20.61 E-value=2e+02 Score=26.14 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=39.7
Q ss_pred eEEEEcCCCcccHHHHHHHHhh----c-CCCcEEEEeCCCccchhHHHhcCCCHHHhhccEEEEEC
Q 028306 71 GVVIYDGVCHLCHGGVKWVIRA----D-KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (210)
Q Consensus 71 ~~V~YDG~CplC~~~v~~L~~~----d-~~~~i~f~~iqs~~~~~~L~~~gi~~e~~~~~l~vv~~ 131 (210)
.+.||-.+|+.|.+....+... . ....+.|..+......++.+.+|+.. . -+++++.+
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~-Pt~~~~~~ 84 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSG--Y-PTLKIFRN 84 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcc--c-cEEEEEeC
Confidence 6789999999999987655432 1 23458888777666666677788753 2 36666654
Done!