RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 028310
(210 letters)
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 106 bits (267), Expect = 2e-27
Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 15/158 (9%)
Query: 39 IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 90
+ V D PD + + + + + L I++A +KL + G+G + V
Sbjct: 68 HTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHV 127
Query: 91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLGVP 146
D+ +A + VA + N+ S AE + ++L L+R + V
Sbjct: 128 DLQSAIDRNVTVAEVTY---CNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVS 184
Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
L V + G IG+ + +RL PF V + T R
Sbjct: 185 HAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 222
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 105 bits (263), Expect = 3e-27
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 15/156 (9%)
Query: 39 IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 90
Q V + PD I + H+ + + + I +A +KL++ G+G + +
Sbjct: 41 HQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHI 100
Query: 91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLGVP 146
D+ AA G+ VA + G N S AE + +L L+R + +
Sbjct: 101 DLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAY 157
Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
L GKT+ +G G IG L +RL+PFG ++
Sbjct: 158 RAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYH 193
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 101 bits (254), Expect = 3e-26
Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 13/146 (8%)
Query: 42 DVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIK 101
+V D+ +V A R+ + +++ ++K I GL+ + + +
Sbjct: 22 KIVRGGDLGNVEA------ALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVT 74
Query: 102 VARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFIL 159
VA G NA + AE + L+L ++ + +++ V + G+ V +L
Sbjct: 75 VAGNAG---SNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPL-IQGEKVAVL 130
Query: 160 GFGNIGVELAKRLRPFGVKIIATKRS 185
G G IG + K L G ++ R+
Sbjct: 131 GLGEIGTRVGKILAALGAQVRGFSRT 156
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 101 bits (255), Expect = 3e-26
Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 11/165 (6%)
Query: 25 SHNYTKEYLQNY-PSIQVDVVPISDVPD---VIANYH-LCVVKTMRLDSNCISRANQMKL 79
+ Q + + + + + V +L +S+ ++KL
Sbjct: 8 VPQEDVPFYQEALKDLSLKIYTTDVSKVPENELKKAELISVFVYDKLTEELLSKMPRLKL 67
Query: 80 IMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIE 139
I VG + +D++ + GI V IP + S AE T ++L L+++ + ++
Sbjct: 68 IHTRSVGFDHIDLDYCKKKGILVTHIPA---YSPESVAEHTFAMILTLVKRLKRIEDRVK 124
Query: 140 QKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
+ L T+ ++G G IG +A FG+K++
Sbjct: 125 KLNFSQDSEILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLC 169
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 101 bits (255), Expect = 3e-26
Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 20/181 (11%)
Query: 10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVKTM-R 65
N+ +VL ++ LQ+ +QV ++ + + +V++ +
Sbjct: 24 ANLRKVLISDS----LDPCCRKILQD-GGLQVVEKQNLSKEELIAELQDCEGLIVRSATK 78
Query: 66 LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
+ ++ I+ A +++++ + G G++ VD+ AATR GI V P GN+ S AELT +++
Sbjct: 79 VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAAELTCGMIM 135
Query: 126 GLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
L R+ + ++ E+KK G L GKT+ ILG G IG E+A R++ FG+K I
Sbjct: 136 CLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRMQSFGMKTI 192
Query: 181 A 181
Sbjct: 193 G 193
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 101 bits (254), Expect = 7e-26
Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 17/157 (10%)
Query: 39 IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 90
++ + + I + + + + I +A ++KL++ GVG + +
Sbjct: 39 HELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHI 98
Query: 91 DINAATRCG--IKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLG 144
D++ + G I V + G N S AE + ML L+R I
Sbjct: 99 DLDYINQTGKKISVLEVTG---SNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAI 155
Query: 145 VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
+ GKT+ +G G IG + +RL PF K +
Sbjct: 156 AKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELL 192
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 100 bits (252), Expect = 7e-26
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 22/181 (12%)
Query: 10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVV--KTM 64
+ L P + L+ IQVD + ++ ++I NY + VV +T
Sbjct: 3 IYTVKALITDP----IDEILIKTLRE-KGIQVDYMPEISKEELLNIIGNYDIIVVRSRT- 56
Query: 65 RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
++ + I + ++K+I + G+GL+ +D A + IKV PG + S ELTI LM
Sbjct: 57 KVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPG---ASTDSAVELTIGLM 113
Query: 125 LGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
+ RK + I +K G+ E L GKT+ I+GFG IG ++ G+K++
Sbjct: 114 IAAARKMYTSMALAKSGIFKKIEGL---E-LAGKTIGIVGFGRIGTKVGIIANAMGMKVL 169
Query: 181 A 181
A
Sbjct: 170 A 170
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 99 bits (250), Expect = 1e-25
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 20/177 (11%)
Query: 14 RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKTM-RLDSN 69
+VL P + L++ ++V D + +++ + +V++ ++
Sbjct: 5 KVLVAAPLHEK----AIQVLKD-AGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRR 59
Query: 70 CISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR 129
I A ++K+I + GVGL+ +D+ AA GI+V P ++ S AEL + LM + R
Sbjct: 60 VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPA---ASSRSVAELAVGLMFSVAR 116
Query: 130 KQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
K + +K+ G L GKT+ I+GFG IG ++AK G+ I+
Sbjct: 117 KIAFADRKMREGVWAKKEA---MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILL 170
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 100 bits (251), Expect = 6e-25
Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 15/154 (9%)
Query: 37 PSIQVDVVP---ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDI 92
++V V + + +V++ +D+ ++ A ++K++ + GVGL+ VD+
Sbjct: 23 DQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDV 82
Query: 93 NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPT 147
+AAT G+ V P N S AE + L+L R+ ++ ++ +
Sbjct: 83 DAATARGVLVVNAPT---SNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSF---S 136
Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
G + GKTV ++G G IG +A+R+ FG ++A
Sbjct: 137 GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA 170
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 98.4 bits (246), Expect = 7e-25
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
Query: 51 DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 109
VI + + V T ++ + A ++K+I G + +D+ AT+ GI V ++ G
Sbjct: 38 GVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSG-- 95
Query: 110 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK--------LGVPTGETLLGKTVFILGF 161
+ + AE T+ L++ L+RK + I + + G E+L GK V ILG
Sbjct: 96 -LLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGM 154
Query: 162 GNIGVELAKRLRPFGVKIIATKRS 185
G IG +A+RL PFGVK+ R
Sbjct: 155 GAIGKAIARRLIPFGVKLYYWSRH 178
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 97.7 bits (244), Expect = 8e-25
Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 9/155 (5%)
Query: 36 YPSIQVDVVPISDVPDVIANYHLCVVKTM-----RLDSNCISRANQMKLIMQFGVGLEGV 90
Y + D V+ + L ++ + + K+I G++ +
Sbjct: 4 YVNFPADGHVREIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGVDHI 63
Query: 91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET 150
D+N + + + S AE L+L + E ++
Sbjct: 64 DVNGIPENVVLCSNAGA----YSISVAEHAFALLLAHAKNILENNELMKAGIFRQSPTTL 119
Query: 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
L GK + ILG+G IG +A + FG+++IA RS
Sbjct: 120 LYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRS 154
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 97.3 bits (243), Expect = 2e-24
Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 17/156 (10%)
Query: 40 QVDVVPISDVPD----VIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINA 94
V + V+ + T+ L + + +++I++ G G + +DI +
Sbjct: 44 TVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKS 103
Query: 95 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR---------KQNEMRMAIEQKKLGV 145
A GI V +P + A+ T+ +L L R ++ ++EQ +
Sbjct: 104 AGDLGIAVCNVPA---ASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVA 160
Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
+ G+T+ I+G G +G +A R + FG ++
Sbjct: 161 SGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLF 196
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 96.9 bits (242), Expect = 3e-24
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 51 DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 109
+ L + + R+D A +++++ + VG + +DI AT+ GI V P +
Sbjct: 41 KKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVL 100
Query: 110 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT---------GETLLGKTVFILG 160
T + A+L L+L R + + + G + GKT+ I+G
Sbjct: 101 T---DATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIG 157
Query: 161 FGNIGVELAKRLRPFGVKIIATKRS 185
G IG +AKR + F ++I+ R+
Sbjct: 158 LGRIGQAIAKRAKGFNMRILYYSRT 182
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 96.2 bits (240), Expect = 3e-24
Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 9/175 (5%)
Query: 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCIS 72
+ VL P + ++ V +D + L +
Sbjct: 2 SLVLMAQATKPEQLQQLQTTYPDWTFKDAAAVTAADYDQIEV----MYGNHPLLKTILAR 57
Query: 73 RANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 132
NQ+K + G++ + + A G+ VA G +A + +E + ML ++R +
Sbjct: 58 PTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSG---IHADAISESVLAAMLSVVRGYH 114
Query: 133 EMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
+ + T TL G+ + I G G IG LA + G+ +I +
Sbjct: 115 AAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTT 169
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 95.7 bits (239), Expect = 4e-24
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 51 DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 109
+ L R+D+ + RA +K+I + VG++ VD+ AA GI+V PG +
Sbjct: 39 KRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVL 98
Query: 110 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGNI 164
T + A+LT+ L+L + R+ E P G L G T+ ++G G I
Sbjct: 99 T---EATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRI 155
Query: 165 GVELAKRLRPFGVKIIATKRS 185
G +AKR FG++++ R+
Sbjct: 156 GQAVAKRALAFGMRVVYHART 176
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 95.4 bits (238), Expect = 9e-24
Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 25 SHNYTKEYLQNY-PSIQVDVVPISDVP------DVIANYH-LCVVKTMRLDSNCISRANQ 76
+ + D+ + D ++ A + + + + + +
Sbjct: 8 VRDVELPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKK 67
Query: 77 M--KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 134
+ K I+ G + +D A G +A +P + + AEL + + LLR
Sbjct: 68 LGVKYILTRTAGTDHIDKEYAKELGFPMAFVPR---YSPNAIAELAVTQAMMLLRHTAYT 124
Query: 135 RMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
+K + + TV ++G G IG A+ G +I
Sbjct: 125 TSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIG 174
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 95.0 bits (237), Expect = 1e-23
Identities = 28/162 (17%), Positives = 63/162 (38%), Gaps = 11/162 (6%)
Query: 28 YTKEYLQNYPSIQVDVVPISDVPDVIANYH----LCVVKTMRLDSNCISRANQM--KLIM 81
+ KE+ + ++V+ P+ +A + V + + + + +
Sbjct: 16 FLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMS 75
Query: 82 QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK 141
VG++ +D+ A G ++ +P + + AE +LR+ M + +
Sbjct: 76 LRNVGVDNIDMAKAKELGFQITNVPV---YSPNAIAEHAAIQAARILRQDKAMDEKVARH 132
Query: 142 KLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
L G + + V ++G G+IG + + FG K+I
Sbjct: 133 DLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVIT 174
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 95.0 bits (237), Expect = 1e-23
Identities = 33/169 (19%), Positives = 71/169 (42%), Gaps = 15/169 (8%)
Query: 25 SHNYTKEYLQNY---PSIQVDVVPISDVPD---VIANYH-LCVVKTMRLDSNCISR--AN 75
+ +Y + + ++ + + + ++T + + A
Sbjct: 8 ARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAY 67
Query: 76 QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMR 135
+K + VG + +D+ A + GI+++ +P + A+ AE + L LLR +++
Sbjct: 68 GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPA---YSPAAIAEFALTDTLYLLRNMGKVQ 124
Query: 136 MAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
++ G G+ L +TV ++G G+IG K + FG K+IA
Sbjct: 125 AQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA 173
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 95.0 bits (237), Expect = 3e-23
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 18/162 (11%)
Query: 31 EYLQNYPSIQVDVVPISDVPD----VIANYHLCVV--KTMRLDSNCISRANQMKLIMQFG 84
E L+ ++ + + I + H + +T L + I+ A ++ I F
Sbjct: 19 ESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTH-LTEDVINAAEKLVAIGAFA 77
Query: 85 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAI-E 139
+G VD++AA + GI V P N S AEL I +L LLR + +
Sbjct: 78 IGTNQVDLDAAAKRGIPVFNAPF---SNTRSVAELVIGELLLLLRGVPEANAKAHRGVGN 134
Query: 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
+ G GK + I+G+G+IG +L G+ +
Sbjct: 135 KLAAG---SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYF 173
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 92.6 bits (231), Expect = 7e-23
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 10/142 (7%)
Query: 51 DVIANYH-LCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGD 108
+ + L + + I R +K I + +G + +D++A GIKV P
Sbjct: 40 ETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHG 99
Query: 109 VTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGN 163
VT + AE+ + L+LG R+ E I + P GE L KT+ I GFG+
Sbjct: 100 VT---VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGS 156
Query: 164 IGVELAKRLRPFGVKIIATKRS 185
IG LAKR + F + I
Sbjct: 157 IGQALAKRAQGFDMDIDYFDTH 178
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 93.8 bits (234), Expect = 8e-23
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 31 EYLQNYPSIQVDVVPISDVPD----VIANYHLCVV--KTMRLDSNCISRANQMKLIMQFG 84
EY ++ V +P + I++ H+ + +T +L + AN++ + F
Sbjct: 30 EYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRT-QLTEEIFAAANRLIAVGCFS 88
Query: 85 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAI-E 139
VG V++ AA + GI V P N S AEL I ++ L+R + E
Sbjct: 89 VGTNQVELKAARKRGIPVFNAPF---SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWE 145
Query: 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
+ +G + GKT+ I+G+GNIG ++ G+ +
Sbjct: 146 KTAIG---SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRY 184
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 92.6 bits (231), Expect = 9e-23
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 8/138 (5%)
Query: 53 IANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG 111
+ + R+D++ + ++++I G + D++A T G+ + +P
Sbjct: 43 CRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPD---L 99
Query: 112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PT--GETLLGKTVFILGFGNIGVE 167
AEL I L +GL R + K P G L TV LG G IG+
Sbjct: 100 LTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLA 159
Query: 168 LAKRLRPFGVKIIATKRS 185
+A RL+ +G + +
Sbjct: 160 MADRLQGWGATLQYHEAK 177
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 90.8 bits (226), Expect = 5e-22
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 7/127 (5%)
Query: 63 TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
L + + + + +I GVG + VD+ A R I V PG + A+L I
Sbjct: 80 GAGLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLA---DDVADLGIA 136
Query: 123 LMLGLLRKQNE----MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK 178
LML +LR+ + +R +P G + GK + +LG G IG LA R FG+
Sbjct: 137 LMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMS 196
Query: 179 IIATKRS 185
+ RS
Sbjct: 197 VRYWNRS 203
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 87.7 bits (218), Expect = 6e-21
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 63 TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
D+ I +++++ F VGL+ VD+ G++V P +T A+L I
Sbjct: 74 NAGADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLT---DDVADLAIG 130
Query: 123 LMLGLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 179
L+L +LR+ E + + K GK V I+G G IG+ +A+R F I
Sbjct: 131 LILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190
Query: 180 IATKRS 185
RS
Sbjct: 191 SYFSRS 196
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 87.7 bits (218), Expect = 8e-21
Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 27/171 (15%)
Query: 33 LQNYPSIQVDVVPISDVPDV---IANYH-LCVV--KTMRLDSNCISRANQMKLIMQFGV- 85
L ++V + V + +A+ L ++ +T R+ + R ++K+I Q G
Sbjct: 23 LLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERT-RVTRQLLDRLPKLKIISQTGRV 81
Query: 86 ---GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMR--- 135
+D+ A T G+ V G + + AELT L++ R+ ++
Sbjct: 82 SRDAGGHIDLEACTDKGVVVLEGKG----SPVAPAELTWALVMAAQRRIPQYVASLKHGA 137
Query: 136 -----MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
+ G L G+T+ I G+G IG +A R FG+ ++
Sbjct: 138 WQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLV 188
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 87.3 bits (217), Expect = 9e-21
Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 14/151 (9%)
Query: 46 ISDVPDVIANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVAR 104
D +I ++ +++ IS + +K+ G G + +D++A G+ A
Sbjct: 49 YGDFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFAN 108
Query: 105 IPGDVTGNAASCAELTIYLMLGLLRKQNE-MRMAIEQK--------KLGVPTGETLLGKT 155
G + ++L +YL+L + R + R A + G
Sbjct: 109 SRGAGD---TATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHV 165
Query: 156 VFILGFGNIGVELAKR-LRPFGVKIIATKRS 185
+ +G G I E+A++ + G+K++ +
Sbjct: 166 LGAVGLGAIQKEIARKAVHGLGMKLVYYDVA 196
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 87.7 bits (218), Expect = 1e-20
Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 24/156 (15%)
Query: 28 YTKEYLQNYPSIQVDVVPISDV-PDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGV 85
Y +E +V VP + + + + +V+++ +++ + +S + +
Sbjct: 14 YARELFSRLG--EVKAVPGRPIPVEELNHADALMVRSVTKVNESLLS-GTPINFVGTATA 70
Query: 86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 145
G + VD + GI + PG NA + E +L L +
Sbjct: 71 GTDHVDEAWLKQAGIGFSAAPG---CNAIAVVEYVFSALLMLAERD-------------- 113
Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
G +L +T+ I+G GN+G L RL G++ +
Sbjct: 114 --GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL 147
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 87.3 bits (217), Expect = 1e-20
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 58 LCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASC 116
L V T + + I + +K I VG + +D+ AA GIKV P ++ +C
Sbjct: 75 LFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLS---DAC 131
Query: 117 AELTIYLMLGLLRKQNEMRMAIEQK--KLGVPT---GETLLGKTVFILGFGNIGVELAKR 171
AE+ + L+L R+ E + PT G L G+ + I G G IG +A R
Sbjct: 132 AEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATR 191
Query: 172 LRPFGVKIIATKRS 185
R FG+ I R+
Sbjct: 192 ARGFGLAIHYHNRT 205
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 86.8 bits (216), Expect = 1e-20
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 18/164 (10%)
Query: 31 EYLQNYPSIQVDVVPISDVP-------DVIANYH-LCVVKTMRLDSNCISRAN-QMKLIM 81
L +V+ SD P +A H L + + +D + A +K+I
Sbjct: 23 VALARAADCEVEQWD-SDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVIS 81
Query: 82 QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK 141
VG++ + ++ + GI+V P +T + AEL + L+L R+ E ++
Sbjct: 82 TMSVGIDHLALDEIKKRGIRVGYTPDVLT---DTTAELAVSLLLTTCRRLPEAIEEVKNG 138
Query: 142 KLG--VPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
P G L TV I+G G IG +A+RL+PFGV+
Sbjct: 139 GWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRF 182
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 84.7 bits (210), Expect = 1e-19
Identities = 23/156 (14%), Positives = 58/156 (37%), Gaps = 24/156 (15%)
Query: 28 YTKEYLQNYPSIQVDVVP-ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGV 85
+ + +P + +A + +V+++ + ++ + ++ + +
Sbjct: 11 VVDAFFA--DQGSIRRLPGRAIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTI 67
Query: 86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 145
G + +D++ GI + PG NA + + +L + +
Sbjct: 68 GTDHLDLDYFAEAGIAWSSAPG---CNARGVVDYVLGCLLAMAEVR-------------- 110
Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
G L +T ++G G +G L + LR G K++
Sbjct: 111 --GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLV 144
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 68.5 bits (168), Expect = 5e-14
Identities = 28/152 (18%), Positives = 64/152 (42%), Gaps = 4/152 (2%)
Query: 34 QNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDIN 93
+ P +++ + + ++ +++AN++ G++ + ++
Sbjct: 25 AHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLLAKANKLSWFQSTYAGVDVL-LD 83
Query: 94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG 153
A R ++ + G +E +L L+R+ R +Q+ + L G
Sbjct: 84 ARCRRDYQLTNVRG---IFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKG 140
Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
+T+ ILG G+IG +A + FG+K++ RS
Sbjct: 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRS 172
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 63.1 bits (154), Expect = 3e-12
Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 11/175 (6%)
Query: 14 RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISR 73
++F P F A+ + + P +V + D +V ++ +
Sbjct: 5 EIIFYHPTFNAAW-WVNALEKALPHARVREWKVGDNNPA----DYALVWQPPVE---MLA 56
Query: 74 ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAELTIYLMLGLLRK 130
++K + G G++ + + A IP + TG E + +L R+
Sbjct: 57 GRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRR 116
Query: 131 QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
++ + Q T +V I+G G +G ++A+ L+ +G + RS
Sbjct: 117 FDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRS 171
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 51.9 bits (124), Expect = 3e-08
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 136 MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 192
MAI+ T T+ G V +LG G +G+ +A++ G K+ R +++
Sbjct: 144 MAIQH------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARI 194
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 44.5 bits (105), Expect = 9e-06
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
T+ G G L++ L P G +II T R+
Sbjct: 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRN 37
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 41.6 bits (98), Expect = 7e-05
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
+ I G G++G+ELA+RL G ++ +RS
Sbjct: 4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRS 35
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 39.8 bits (94), Expect = 3e-04
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
++ G ++L G V + G GN+ L K+L G K++ T
Sbjct: 163 KEAFG---SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVT 202
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 39.5 bits (93), Expect = 4e-04
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
G+ + L G TV + G G +G LA G +++
Sbjct: 166 AHRGLGS---LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVA 204
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 37.9 bits (89), Expect = 0.001
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
G L + I GFGN G LAK + G K+I
Sbjct: 216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIG 249
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 37.9 bits (89), Expect = 0.001
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
G L G V + G G +G +A G++++A
Sbjct: 213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVA 246
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 37.9 bits (89), Expect = 0.002
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
G + G V I GFGN+G A+ G +++A
Sbjct: 230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVA 263
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 37.5 bits (88), Expect = 0.002
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
+ GKTV I G GN+G A L G K+IA
Sbjct: 205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA 238
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 37.1 bits (87), Expect = 0.002
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
G + + + GFGN+G K + G K+ A
Sbjct: 207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCA 240
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 36.8 bits (86), Expect = 0.003
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
+ L K + G GN+ L ++L G ++
Sbjct: 234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLT 267
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 36.8 bits (86), Expect = 0.004
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
+TL+GKTV + GFGN+ AK+L G K +
Sbjct: 225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT 258
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 36.2 bits (84), Expect = 0.005
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
KT + GFGN+G+ + L FG K I
Sbjct: 239 TPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIT 272
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.005
Identities = 40/264 (15%), Positives = 62/264 (23%), Gaps = 74/264 (28%)
Query: 7 SSDKNITRVLFCGP--HFPASHN-------YTKEYLQNYPSIQVDVVP------------ 45
+ K +T L H H+ K L Y + +P
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 46 -----ISDVPDVIANY-HLC---VVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAAT 96
I D N+ H+ + + N + A K+ + V I
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 97 RCGIKVARIPGDVTGNAASCA----------ELTIYLM---LGLLRKQNEM----RMAIE 139
I I DV E TI + L L K R ++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 140 QKKLGV---PTGETLLGKTVFILGFGNIG-----VELAKRLRPF----------GVKIIA 181
+ + IG +E +R+ F KI
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSH--IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 182 TKRSWASHSQVSCQSSGMLGPLSD 205
+W S +L L
Sbjct: 510 DSTAW-------NASGSILNTLQQ 526
Score = 30.6 bits (68), Expect = 0.44
Identities = 32/196 (16%), Positives = 59/196 (30%), Gaps = 71/196 (36%)
Query: 29 TKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLE 88
T+ Y++ Q D + + V A Y++ ++ + K ++ GV
Sbjct: 109 TRMYIE-----QRD--RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-- 159
Query: 89 GVDINAATRCG-----IKVAR-------IPGDV----TGNAASCAELTIYLMLGLLRK-- 130
G G + V + + N + E + ++ LL +
Sbjct: 160 G--------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKN-CNSPETVLEMLQKLLYQID 210
Query: 131 --------------------QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAK 170
Q E+R ++ K LL +L V+ AK
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCLL-----VLL----NVQNAK 257
Query: 171 RLRPFGV--KIIATKR 184
F + KI+ T R
Sbjct: 258 AWNAFNLSCKILLTTR 273
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 35.5 bits (82), Expect = 0.007
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 135 RMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG--VKIIA 181
+AI+ T T+ G V +LG G G+ +A+ G VK+ A
Sbjct: 145 MLAIQH------TDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGA 187
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 35.7 bits (83), Expect = 0.008
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
+ +T + G GN+ + ++L VK++
Sbjct: 247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLT 280
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A
{Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A
1euz_A
Length = 419
Score = 35.2 bits (82), Expect = 0.010
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRL-RPFGVKIIA 181
K LG +TL GKT+ I G+GN G LAK + FG+K++A
Sbjct: 203 KVLGW---DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVA 241
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant,
oxidoreductase; 2.90A {Thermotoga maritima} SCOP:
c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Length = 415
Score = 34.8 bits (81), Expect = 0.014
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 148 GETLLGKTVFILGFGNIGVELAKRL-RPFGVKIIA 181
G TV + GFGN+G A + + G K++A
Sbjct: 204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVA 238
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 34.9 bits (81), Expect = 0.016
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 154 KTVFILGFGNIGVELAKRL-RPFGVKII 180
+ + I+G GNIG LAKRL + + VK+I
Sbjct: 236 RRIMIVGGGNIGASLAKRLEQTYSVKLI 263
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
{Escherichia coli} PDB: 3sbo_A 2yfg_E
Length = 447
Score = 34.6 bits (80), Expect = 0.019
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
G G V + G GN+ ++ FG ++I
Sbjct: 227 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVIT 260
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 32.7 bits (75), Expect = 0.057
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 134 MRMA-IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
MR + + + G T + + K V + G+G +G A+ LR G I R
Sbjct: 2 MRESYANENQFGFKTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRE 54
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 32.7 bits (75), Expect = 0.072
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 142 KLGVPTGETLLGKTVFIL----GFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 192
+L V + I+ G G+I V++A++ + +IAT + V
Sbjct: 161 RLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQR--TDLTVIATASRPETQEWV 213
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 32.9 bits (74), Expect = 0.080
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
LG + V ILG +GVE+AK + GVK +
Sbjct: 17 LGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSM 54
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 30.0 bits (68), Expect = 0.28
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIA 181
K ++G G G + K L G +++A
Sbjct: 7 KQFAVIGLGRFGGSIVKELHRMGHEVLA 34
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 30.7 bits (70), Expect = 0.35
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 153 GKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
GKT + G+G++G A LR FG +++ T
Sbjct: 211 GKTACVCGYGDVGKGCAAALRGFGARVVVT 240
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 30.8 bits (70), Expect = 0.35
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 153 GKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
GK + G+G++G A+ L G ++ T
Sbjct: 247 GKVAVVCGYGDVGKGSAQSLAGAGARVKVT 276
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 30.2 bits (69), Expect = 0.38
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 156 VFILGFGNIGVELAKRL--RPFGVKII 180
V I+G LA+ + R +GV II
Sbjct: 3 VIIIGGETTAYYLARSMLSRKYGVVII 29
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 30.3 bits (68), Expect = 0.47
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 147 TGETLLGKTVFILGFG--NIGVELAKRLRPFGVKIIAT 182
+G T GK + G G +IG E+ + L G K+I T
Sbjct: 646 SGLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVT 683
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 29.2 bits (66), Expect = 0.52
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIA 181
++G GV L + L G K++A
Sbjct: 7 YEYIVIGSEAAGVGLVRELTAAGKKVLA 34
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 29.9 bits (68), Expect = 0.54
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 153 GKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
GK V + G+G +G L+ G + T
Sbjct: 220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVT 249
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 29.9 bits (68), Expect = 0.55
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 144 GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
LG TV ++G G IG+ + +G ++ T
Sbjct: 160 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCT 198
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 0.55
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 153 GKTVFILGFG--NIGVELAKRLRPFGVKIIAT 182
K V I G G +IG E+ + L G K++ T
Sbjct: 476 DKYVLITGAGKGSIGAEVLQGLLQGGAKVVVT 507
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 30.3 bits (68), Expect = 0.57
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 147 TGETLLGKTVFILGFG--NIGVELAKRLRPFGVKIIAT 182
G T K V I G G +IG E+ + L G K++ T
Sbjct: 669 NGVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVT 706
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 29.2 bits (65), Expect = 0.79
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
V I G G+ G L ++ G ++ R+
Sbjct: 21 VVCIFGTGDFGKSLGLKMLQCGYSVVFGSRN 51
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 28.9 bits (65), Expect = 1.1
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
+ V ILG G IG L + L + RS
Sbjct: 9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRS 40
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 28.2 bits (64), Expect = 1.2
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
G + ++G G + E+A K+ R+
Sbjct: 17 RKNGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRN 53
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 28.5 bits (64), Expect = 1.5
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 16/90 (17%)
Query: 102 VARIPGDVTGNAA-----SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTV 156
+ +IP + + E +I E+ ++ + TL + V
Sbjct: 135 LVKIPKSIEDIGILAQPLADIEKSIE----------EILEVQKRVPVWTCDDGTLNCRKV 184
Query: 157 FILGFGNIGVELAKRLRPFGV-KIIATKRS 185
++G G IGV R +G+ +A +R
Sbjct: 185 LVVGTGPIGVLFTLLFRTYGLEVWMANRRE 214
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 28.3 bits (62), Expect = 1.6
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 158 ILGFGNIGVELAKRLRPFGVKIIATKRS 185
I G GN+G + G ++
Sbjct: 24 IFGKGNMGQAIGHNFEIAGHEVTYYGSK 51
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 28.5 bits (64), Expect = 1.7
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
T G V I+G GN G ++ + T+
Sbjct: 156 STPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTWITQHE 195
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 28.1 bits (62), Expect = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 156 VFILGFGNIGVELAKRLRPFGVKIIA 181
V ++G+G IG LA+ L G +I A
Sbjct: 3 VGLIGYGAIGKFLAEWLERNGFEIAA 28
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 28.0 bits (63), Expect = 2.2
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 144 GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIAT 182
GV G TV ILG G IG+ + R G +I +
Sbjct: 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILS 213
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 27.7 bits (61), Expect = 2.4
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 153 GKTVFILGFGNIGVELAKRL 172
G + +LG G +G +A L
Sbjct: 19 GMKIAVLGTGTVGRTMAGAL 38
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 27.8 bits (62), Expect = 2.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
T + GK V I G+G++G A+ ++ G ++ T+
Sbjct: 268 TDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTE 304
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase;
HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3
d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*
Length = 358
Score = 27.6 bits (62), Expect = 3.2
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 156 VFILGFGNIGVELAKRLR 173
V ++G G +G +L
Sbjct: 7 VAVIGAGVVGSAFLDQLL 24
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 27.4 bits (60), Expect = 3.3
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 17/64 (26%)
Query: 132 NEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ 191
N M+ +IE + ++G GN+ LAK L G +I+ S ++
Sbjct: 2 NAMKRSIEDTPIV-------------LIGAGNLATNLAKALYRKGFRIVQ----VYSRTE 44
Query: 192 VSCQ 195
S +
Sbjct: 45 ESAR 48
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 27.8 bits (61), Expect = 3.6
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 136 MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
MA+ + L E + G V ++G G IG EL K L G I
Sbjct: 1 MALS-RGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHI 44
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 27.2 bits (60), Expect = 3.8
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 153 GKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASH 189
G++V ++G + +L + L P I +
Sbjct: 212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDI 249
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 27.3 bits (61), Expect = 4.4
Identities = 12/64 (18%), Positives = 19/64 (29%)
Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGMLGPLSDG 206
+ +G V I+G G IG + A L G + + + G G
Sbjct: 488 RDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQG 547
Query: 207 ETHH 210
Sbjct: 548 MQIP 551
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional
domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A
{Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A*
2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A*
1p4r_A* 1pl0_A*
Length = 593
Score = 27.3 bits (61), Expect = 4.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 166 VELAKRLRPFGVKIIAT 182
VE A+ L G+ +IA+
Sbjct: 19 VEFARSLNALGLGLIAS 35
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 27.0 bits (60), Expect = 5.1
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIAT 182
G G V ILG G IG+ L+ G K+I +
Sbjct: 209 GGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILS 244
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 26.8 bits (60), Expect = 5.1
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 139 EQKKLGVPTGETLLGKTVFILG--FGNIGVELAKRLRPFGVKIIATKR 184
G+ + + T+FI G G G A+R G ++ T R
Sbjct: 7 HHHSSGLVPRGSHMSSTLFITGATSG-FGEACARRFAEAGWSLVLTGR 53
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 26.2 bits (58), Expect = 5.2
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 158 ILGFGNIGVELAKRLRPFGVKIIA 181
+ G + + +L G +
Sbjct: 8 VCGHSILAINTILQLNQRGQNVTV 31
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 26.8 bits (60), Expect = 5.2
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 144 GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIAT 182
+ K V I+G G IG+ + G + A
Sbjct: 152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAI 191
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 26.8 bits (59), Expect = 5.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
V ILG G+ LA RL G K++ R+
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVVVGSRN 60
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Length = 534
Score = 27.1 bits (61), Expect = 5.3
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 166 VELAKRLRPFGVKIIAT 182
VE K L G +I++T
Sbjct: 38 VEFGKELENLGFEILST 54
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A*
1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A*
3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Length = 492
Score = 27.1 bits (60), Expect = 5.6
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
L GK V + G + G++++ T
Sbjct: 346 LEGKRVMLYIGGLRPRHVIGAYEDLGMEVVGT 377
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 26.8 bits (60), Expect = 5.9
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
T K V +LG G A+ L G +
Sbjct: 5 TTFENKKVLVLGLARSGEAAARLLAKLGAIVTVN 38
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 26.8 bits (59), Expect = 6.0
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 149 ETLLGKTVFILGFGN--IGVELAKRLRPFGVKIIATKRS 185
+ + G GN IG E+ K+L G+ ++ T R
Sbjct: 8 TVTKRRCAVVTG-GNKGIGFEICKQLSSNGIMVVLTCRD 45
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase,
hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis}
PDB: 4a1o_A*
Length = 523
Score = 26.7 bits (60), Expect = 6.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 166 VELAKRLRPFGVKIIAT 182
V+LA+ L GV+II+T
Sbjct: 24 VDLAQGLSAAGVEIIST 40
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 26.7 bits (59), Expect = 6.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
T + GK + G+G++G A+ LR G + T+
Sbjct: 271 TDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTE 307
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 26.9 bits (60), Expect = 6.1
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 145 VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 179
V + E GK V I+G G+ ++ L +
Sbjct: 155 VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASV 189
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 26.8 bits (60), Expect = 6.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 156 VFILGFGNIGVELAKRLRPFGVKIIATKRS 185
+ ++G G IG LA LR G +I R
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQ 32
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming
nucleotide, nucleotidyltransfera superfamily; HET: CTP;
1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7
d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A*
1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A*
2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A
2zh4_A ...
Length = 437
Score = 26.9 bits (59), Expect = 6.1
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 24 ASHNYTKEYLQNYPSIQVDVVPISDVPD 51
A H Y ++ +VDVVP + +
Sbjct: 95 AEHPYVHGVVKGV---EVDVVPCYKLKE 119
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 26.9 bits (60), Expect = 6.4
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 136 MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
M + +LG T ++ + + +LG G +G E+A + GV+++A
Sbjct: 4 MIKLRDELGTATTDS--AQKILLLGSGELGKEIAIEAQRLGVEVVA 47
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein
dual-specificity phosphatase, inhibitor; HET: STT;
1.90A {Homo sapiens} PDB: 1vhr_A* 1j4x_A*
Length = 183
Score = 26.1 bits (58), Expect = 7.0
Identities = 8/44 (18%), Positives = 11/44 (25%)
Query: 8 SDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPD 51
IT VL H T I + +D +
Sbjct: 50 QKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQE 93
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4;
1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Length = 464
Score = 26.7 bits (60), Expect = 7.2
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 166 VELAKRLRPFGVKIIAT 182
+++ + L G +I A+
Sbjct: 27 LDILRELHEKGWEIWAS 43
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA
polymerase beta motif; 2.00A {Escherichia coli} SCOP:
a.24.16.4 d.218.1.9
Length = 440
Score = 26.4 bits (58), Expect = 8.4
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 7/58 (12%)
Query: 108 DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIG 165
+ + AE I L G P + + ILG G +G
Sbjct: 114 SILQQLSYLAETLIVAARDWLYDACCRE-------WGTPCNAQGEAQPLLILGMGKLG 164
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 26.0 bits (58), Expect = 9.0
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIAT 182
+ GK+V I G G +G+ + G +I +
Sbjct: 166 ISGKSVLITGAGPLGLLGIAVAKASGAYPVIVS 198
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 483
Score = 26.3 bits (58), Expect = 9.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
L GK V + G + L+ G+K++AT
Sbjct: 330 LEGKRVLLYTGGVKSWSVVSALQDLGMKVVAT 361
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein
structure initiative, joint center for structural G
oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 26.1 bits (57), Expect = 9.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 156 VFILGFGNIGVELAKRL 172
V I+G GNIG +L +
Sbjct: 15 VLIIGMGNIGKKLVELG 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.404
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,219,813
Number of extensions: 188444
Number of successful extensions: 782
Number of sequences better than 10.0: 1
Number of HSP's gapped: 719
Number of HSP's successfully gapped: 124
Length of query: 210
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 121
Effective length of database: 4,216,824
Effective search space: 510235704
Effective search space used: 510235704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)