BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028312
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 146 bits (368), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 75/128 (58%), Positives = 85/128 (66%), Gaps = 6/128 (4%)
Query: 51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
M+K+ KDY DPPP P FD EL WSF+RA IAEFIA I
Sbjct: 1 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 60
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
G+ +T C VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 61 GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 114
Query: 171 SLVRAVMW 178
SL+RA+++
Sbjct: 115 SLLRALVY 122
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/128 (58%), Positives = 85/128 (66%), Gaps = 6/128 (4%)
Query: 51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
M+K+ KDY DPPP P FD EL WSF+RA IAEFIA I
Sbjct: 1 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 60
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
G+ +T C VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 61 GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 114
Query: 171 SLVRAVMW 178
SL+RA+++
Sbjct: 115 SLLRALVY 122
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/128 (58%), Positives = 85/128 (66%), Gaps = 6/128 (4%)
Query: 51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
M+K+ KDY DPPP P FD EL WSF+RA IAEFIA I
Sbjct: 24 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 83
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
G+ +T C VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 84 GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 137
Query: 171 SLVRAVMW 178
SL+RA+++
Sbjct: 138 SLLRALVY 145
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/128 (57%), Positives = 84/128 (65%), Gaps = 6/128 (4%)
Query: 51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
M+K+ KDY DPPP P FD EL WSF+RA IAEFIA I
Sbjct: 24 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 83
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
G+ +T C VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 84 GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 137
Query: 171 SLVRAVMW 178
L+RA+++
Sbjct: 138 ELLRALVY 145
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/128 (57%), Positives = 84/128 (65%), Gaps = 6/128 (4%)
Query: 51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
M+K+ KDY DPPP P FD EL WSF+RA IAEFIA I
Sbjct: 20 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 79
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
G+ +T C VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 80 GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 133
Query: 171 SLVRAVMW 178
L+RA+++
Sbjct: 134 ELLRALVY 141
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 79 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYK-----SQTDPAKNVDGCAGVGILGI 133
A E K F+RA++AEF+A +G+K +QT NV +
Sbjct: 2 ASEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVK---------V 52
Query: 134 AWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMW 178
+ AFG I L ISG H+NPAVT GL L+ ++S+ RA+M+
Sbjct: 53 SLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMY 97
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 79 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGV-GILGIAWAF 137
A E K F+RA++AEF+A +G+ P K+ V + ++ AF
Sbjct: 2 ASEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHY---PIKSNQTTGAVQDNVKVSLAF 58
Query: 138 GGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMW 178
G I L ISG H+NPAVT GL L+ ++S++RA+M+
Sbjct: 59 GLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMY 99
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
+F++A+ AEF+A I + +P V ++ I+ FG I +V
Sbjct: 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-------VDMVLISLCFGLSIATMV 102
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMW 178
C ISGGHINPAVT + RK+S+ ++V +
Sbjct: 103 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFY 135
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
+F++A+ AEF+A I + +P V ++ I+ FG I +V
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-------VDMVLISLCFGLSIATMV 63
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMW 178
C ISGGHINPAVT + RK+S+ ++V +
Sbjct: 64 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFY 96
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
+F++A+ AEF+A I + +P V ++ I+ FG I +V
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-------VDMVLISLCFGLSIATMV 63
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMW 178
C ISGGHINPAVT + RK+S+ ++V +
Sbjct: 64 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFY 96
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
+F++A+ AEF+A I + P V ++ I+ FG I +V
Sbjct: 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLP-------VDMVLISLCFGLSIATMV 54
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMW 178
C ISGGHINPAVT + RK+S+ ++V +
Sbjct: 55 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFY 87
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 81 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGM 140
EL SF+RA+ AEF A +G + P + +L +A AFG
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLA 51
Query: 141 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMW 178
+ LV ISG H+NPAVTF + ++SL+RA+ +
Sbjct: 52 LATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICY 89
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 81 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGM 140
EL SF+RA+ AEF A +G + P + +L +A AFG
Sbjct: 3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLA 51
Query: 141 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMW 178
+ LV ISG H+NPAVTF + ++SL+RA+ +
Sbjct: 52 LATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICY 89
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 81 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGM 140
E+ +F +A+ AEF+A + + S IL IA AFG
Sbjct: 5 EVCSVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQIALAFGLA 53
Query: 141 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMW 178
I L +SGGHINPA+T L + ++SL+RA +
Sbjct: 54 IGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFY 91
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
SF+RA+ AEF A +G + P + +L +A AFG + LV
Sbjct: 2 SFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLV 50
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMW 178
ISG H+NPAVTF + ++SL+RA+ +
Sbjct: 51 QAVGHISGAHVNPAVTFAFLVGSQMSLLRAICY 83
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 86 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLV 145
SF+RA+ AEF A +G + P + +L +A AFG + LV
Sbjct: 4 SFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLV 52
Query: 146 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMW 178
ISG H+NPAVTF + ++SL+RA+ +
Sbjct: 53 QAVGHISGAHVNPAVTFAFLVGSQMSLLRAICY 85
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARK 169
G+G G+A AFG + + Y GISGGH NPAV+ GL +A +
Sbjct: 61 GIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGR 103
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164
G+G G+A AFG + + + ISGGH NPAVT GL
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGL 73
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164
G+G G+A AFG + + + ISGGH NPAVT GL
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGL 73
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164
G+G G+A AFG + + + ISGGH NPAVT GL
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGL 73
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164
G+G G+A AFG + + + ISGGH NPAVT GL
Sbjct: 33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGL 70
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164
G+G G+A AFG + + + ISGGH NPAVT GL
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGL 73
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 110 IGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARK 169
I + P G ++ I++ FG + V V+ T +SGG++NPAVT L LAR
Sbjct: 65 IAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARA 124
Query: 170 VSLVRAVM 177
+ R ++
Sbjct: 125 IPPFRGIL 132
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164
G+G G+A A+G + + + ISGGH NPAVT GL
Sbjct: 36 GIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGL 73
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 127 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164
G+G G+A A+G + + + ISGGH NPAVT GL
Sbjct: 36 GIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGL 73
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 133 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFL 166
I+ FG + + +Y TAG+SG H+NPAVT L+L
Sbjct: 44 ISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWL 77
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 133 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARK 169
I AFG I +Y ISG HINPAVT GL+ +K
Sbjct: 58 IGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKK 94
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 131 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFL 166
+ + W G + + +Y TAG+SG H+NPAVT L+L
Sbjct: 44 ISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWL 77
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 133 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164
I AF I ++Y ISG HINPAVT L
Sbjct: 59 IGMAFALAIAAVIYSLGRISGAHINPAVTIAL 90
>pdb|2EA3|A Chain A, Crystal Structure Of Cellulomonas Bogoriensis
Chymotrypsin
Length = 189
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 26 SRCACGFAVLSVFSVSLQIIVTGFPMAKDTGVAEHGSYSAKDY 68
SRC+ GFAV F + TG A TG S+ DY
Sbjct: 15 SRCSIGFAVNGGFITAGHCGRTGATTANPTGTFAGSSFPGNDY 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,163,009
Number of Sequences: 62578
Number of extensions: 179863
Number of successful extensions: 440
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 48
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)