Query 028312
Match_columns 210
No_of_seqs 215 out of 1128
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 09:33:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0580 GlpF Glycerol uptake f 99.9 2.7E-25 5.9E-30 194.6 9.6 118 86-209 3-130 (241)
2 KOG0224 Aquaporin (major intri 99.9 2.9E-25 6.3E-30 198.8 8.0 118 83-208 27-160 (316)
3 KOG0223 Aquaporin (major intri 99.9 8.1E-24 1.8E-28 185.1 12.3 106 80-194 3-110 (238)
4 PLN00184 aquaporin NIP1; Provi 99.9 1.5E-22 3.2E-27 181.9 13.8 91 83-182 49-139 (296)
5 PF00230 MIP: Major intrinsic 99.9 3.7E-23 8E-28 176.3 9.2 99 81-182 1-99 (227)
6 PLN00182 putative aquaporin NI 99.9 5E-22 1.1E-26 177.6 14.5 90 84-182 38-127 (283)
7 PTZ00016 aquaglyceroporin; Pro 99.9 2.1E-21 4.5E-26 174.2 13.9 94 80-182 41-135 (294)
8 PLN00167 aquaporin TIP5; Provi 99.9 8.7E-21 1.9E-25 167.3 13.3 101 78-182 12-112 (256)
9 PLN00026 aquaporin NIP; Provi 99.8 1.2E-20 2.7E-25 169.7 12.0 89 85-182 68-156 (298)
10 PRK05420 aquaporin Z; Provisio 99.8 1.6E-20 3.4E-25 163.1 12.0 87 88-182 2-88 (231)
11 PLN00166 aquaporin TIP2; Provi 99.8 3E-20 6.4E-25 163.3 13.1 101 78-182 8-108 (250)
12 PLN00027 aquaporin TIP; Provis 99.8 4.3E-20 9.3E-25 162.2 13.0 101 78-182 10-110 (252)
13 PLN00183 putative aquaporin NI 99.8 6.3E-20 1.4E-24 163.4 12.9 121 53-182 8-130 (274)
14 cd00333 MIP Major intrinsic pr 99.8 5.1E-19 1.1E-23 152.2 11.6 86 89-182 1-86 (228)
15 TIGR00861 MIP MIP family chann 99.7 1.2E-17 2.5E-22 142.7 10.3 86 93-182 1-86 (216)
16 cd00333 MIP Major intrinsic pr 99.5 2.4E-14 5.2E-19 123.2 8.8 86 85-182 127-214 (228)
17 PLN00182 putative aquaporin NI 99.5 6.9E-14 1.5E-18 125.3 9.5 82 86-182 157-238 (283)
18 TIGR00861 MIP MIP family chann 99.5 1E-13 2.2E-18 118.5 8.2 91 85-187 119-212 (216)
19 PLN00026 aquaporin NIP; Provi 99.4 5E-13 1.1E-17 120.6 9.2 83 85-182 184-266 (298)
20 PLN00183 putative aquaporin NI 99.4 5.2E-13 1.1E-17 119.2 8.3 82 86-182 159-240 (274)
21 PLN00184 aquaporin NIP1; Provi 99.2 6.5E-11 1.4E-15 106.8 9.2 82 86-182 176-257 (296)
22 KOG0223 Aquaporin (major intri 99.1 4.3E-11 9.3E-16 105.2 5.0 82 85-182 129-210 (238)
23 PLN00166 aquaporin TIP2; Provi 99.1 5.8E-10 1.2E-14 98.3 10.0 85 85-182 137-221 (250)
24 PLN00027 aquaporin TIP; Provis 99.0 1.9E-09 4.1E-14 95.0 10.5 85 85-182 139-223 (252)
25 PRK05420 aquaporin Z; Provisio 99.0 2.2E-09 4.8E-14 93.4 9.0 82 86-182 130-212 (231)
26 PLN00167 aquaporin TIP5; Provi 98.9 3E-09 6.4E-14 94.2 7.5 84 85-182 141-224 (256)
27 PF00230 MIP: Major intrinsic 98.9 1E-08 2.2E-13 87.5 8.7 85 85-182 132-216 (227)
28 PTZ00016 aquaglyceroporin; Pro 98.8 1.2E-08 2.6E-13 91.9 8.1 85 85-182 181-274 (294)
29 COG0580 GlpF Glycerol uptake f 98.5 2.8E-07 6.1E-12 81.4 8.1 83 86-182 134-224 (241)
30 KOG0224 Aquaporin (major intri 95.4 0.023 5E-07 52.1 4.9 70 85-167 165-234 (316)
31 PF11812 DUF3333: Domain of un 66.1 7.4 0.00016 32.4 3.5 42 10-51 3-44 (155)
32 PF03033 Glyco_transf_28: Glyc 64.5 2.2 4.8E-05 32.5 0.0 19 151-169 7-25 (139)
33 PRK12446 undecaprenyldiphospho 59.9 2.1 4.6E-05 39.1 -1.0 22 147-168 6-27 (352)
34 PRK01100 putative accessory ge 58.3 15 0.00033 31.6 4.1 22 7-28 134-158 (210)
35 PF06796 NapE: Periplasmic nit 55.0 15 0.00032 25.9 2.8 35 7-41 4-38 (56)
36 KOG3571 Dishevelled 3 and rela 43.6 4.1 8.9E-05 40.2 -1.8 30 23-53 230-259 (626)
37 PF13786 DUF4179: Domain of un 42.4 8.3 0.00018 28.1 0.0 6 19-24 8-13 (94)
38 PF04647 AgrB: Accessory gene 40.3 28 0.0006 28.6 2.8 11 7-17 122-132 (185)
39 smart00793 AgrB Accessory gene 39.3 28 0.00062 29.1 2.8 8 7-14 122-129 (184)
40 COG3817 Predicted membrane pro 35.7 2.6E+02 0.0057 25.8 8.4 94 69-167 147-257 (313)
41 KOG2422 Uncharacterized conser 35.0 13 0.00028 37.4 0.1 14 153-166 281-294 (665)
42 COG2116 FocA Formate/nitrite f 30.4 4.2E+02 0.0091 24.1 10.6 96 86-194 30-133 (265)
43 PF05966 Chordopox_A33R: Chord 30.2 17 0.00037 31.4 0.0 37 3-39 18-56 (190)
44 PF11947 DUF3464: Protein of u 29.9 1.9E+02 0.0042 24.1 6.2 18 130-147 100-117 (153)
45 PF15468 DUF4636: Domain of un 29.4 33 0.00072 30.5 1.7 8 69-76 11-18 (243)
46 KOG4647 Uncharacterized membra 28.3 91 0.002 28.1 4.1 37 70-106 77-113 (263)
47 COG0707 MurG UDP-N-acetylgluco 27.0 35 0.00075 31.8 1.4 23 147-169 5-27 (357)
48 PRK15120 lipopolysaccharide AB 25.0 2.8E+02 0.0061 25.2 7.0 19 92-110 270-288 (366)
49 COG0573 PstC ABC-type phosphat 23.9 3E+02 0.0066 25.5 6.9 82 23-110 22-104 (310)
50 KOG4752 Ribosomal protein L41 23.0 58 0.0013 19.2 1.3 11 13-23 7-17 (26)
51 PF12065 DUF3545: Protein of u 22.0 60 0.0013 23.1 1.5 10 7-16 17-26 (59)
52 TIGR02908 CoxD_Bacillus cytoch 21.9 95 0.0021 24.7 2.8 26 14-39 14-39 (110)
53 PF03530 SK_channel: Calcium-a 21.7 1.1E+02 0.0024 24.5 3.2 25 19-44 10-34 (119)
54 PF06166 DUF979: Protein of un 21.0 3.6E+02 0.0078 25.1 6.7 93 71-168 145-254 (308)
55 PF15333 TAF1D: TATA box-bindi 20.6 41 0.0009 29.6 0.6 19 86-104 116-136 (217)
No 1
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.7e-25 Score=194.64 Aligned_cols=118 Identities=26% Similarity=0.364 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHH
Q 028312 86 SFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 165 (210)
Q Consensus 86 sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal~ 165 (210)
+..+.+++||+||+++++++++++++..... ++..+.+++.++++||+++++.+|++++|||+|+|||||++++
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~------~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la 76 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKG------SKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALA 76 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhcc------ccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHH
Confidence 4567789999999999999999998776432 2234567888999999999999999999999999999999999
Q ss_pred HhccCcchhhHHHHHHH---------HHHHHhHhhhhccC-CCCceeeeeeccC
Q 028312 166 LARKVSLVRAVMWGQRA---------GRWVQHRRWIGRRD-HRHLCLGLHCLLG 209 (210)
Q Consensus 166 l~gkis~~r~~~YiiAQ---------ga~l~y~~~~~~~~-~~~~~~g~fct~~ 209 (210)
+.|+++|.+++.|++|| .+|+.|..++...+ |+...+|.|||.-
T Consensus 77 ~~g~fp~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p 130 (241)
T COG0580 77 VRGRFPWRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSP 130 (241)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCC
Confidence 99999999999999999 35677788888888 9999999999953
No 2
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.9e-25 Score=198.85 Aligned_cols=118 Identities=19% Similarity=0.319 Sum_probs=100.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHH
Q 028312 83 TKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTF 162 (210)
Q Consensus 83 ~~~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTf 162 (210)
.+.++.|+++|||+||+++++++++++++...+. ..+.+++.+.++||+++++.+|+.++|||||+||||||
T Consensus 27 i~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~--------g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~ 98 (316)
T KOG0224|consen 27 IRNELLREFLAEFLGTFVLVVFGLGSVAQAVLSG--------GTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSL 98 (316)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhccceeEEEEecc--------CCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHH
Confidence 3458999999999999999999999998876542 22345778899999999999999999999999999999
Q ss_pred HHHHhccCcchhhHHHHHHH---------HHHHHhHhhhhccC-------CCCceeeeeecc
Q 028312 163 GLFLARKVSLVRAVMWGQRA---------GRWVQHRRWIGRRD-------HRHLCLGLHCLL 208 (210)
Q Consensus 163 al~l~gkis~~r~~~YiiAQ---------ga~l~y~~~~~~~~-------~~~~~~g~fct~ 208 (210)
++++.|+++|.++++|+++| ++|..|++.+..++ .|+...|+|||-
T Consensus 99 a~~~~g~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTy 160 (316)
T KOG0224|consen 99 AMCILGRLPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATY 160 (316)
T ss_pred HHHHhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeec
Confidence 99999999999999999999 34566666666655 566689999983
No 3
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.91 E-value=8.1e-24 Score=185.10 Aligned_cols=106 Identities=44% Similarity=0.569 Sum_probs=91.4
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChH
Q 028312 80 VELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPA 159 (210)
Q Consensus 80 ~el~~~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPA 159 (210)
.|.++++++|++++||++|++|+|+++++++.... .+...+.+.+++++|+++++.+|++++|||||+|||
T Consensus 3 ~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~---------~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPA 73 (238)
T KOG0223|consen 3 GELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK---------YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPA 73 (238)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHH
Confidence 46778999999999999999999999999886653 123456889999999999999999999999999999
Q ss_pred HHHHHHHhccCcchhhHHHHHHH--HHHHHhHhhhhc
Q 028312 160 VTFGLFLARKVSLVRAVMWGQRA--GRWVQHRRWIGR 194 (210)
Q Consensus 160 VTfal~l~gkis~~r~~~YiiAQ--ga~l~y~~~~~~ 194 (210)
||+++++.|+++|.|++.||++| |+.+.+......
T Consensus 74 VT~a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~ 110 (238)
T KOG0223|consen 74 VTLAFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVV 110 (238)
T ss_pred HHHHHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHhee
Confidence 99999999999999999999999 555554433333
No 4
>PLN00184 aquaporin NIP1; Provisional
Probab=99.89 E-value=1.5e-22 Score=181.94 Aligned_cols=91 Identities=30% Similarity=0.427 Sum_probs=79.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHH
Q 028312 83 TKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTF 162 (210)
Q Consensus 83 ~~~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTf 162 (210)
.+++++|++++||+||++|+|+++++++..... ....+++.++++||+++++++|++++|||||+||||||
T Consensus 49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~---------~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTl 119 (296)
T PLN00184 49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQN---------DNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTI 119 (296)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---------CCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHH
Confidence 356899999999999999999999887643211 11235778999999999999999999999999999999
Q ss_pred HHHHhccCcchhhHHHHHHH
Q 028312 163 GLFLARKVSLVRAVMWGQRA 182 (210)
Q Consensus 163 al~l~gkis~~r~~~YiiAQ 182 (210)
++++.++++|.++++||++|
T Consensus 120 a~al~g~~~~~~~~~YiiaQ 139 (296)
T PLN00184 120 AFASCGRFPLKQVPAYVISQ 139 (296)
T ss_pred HHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999
No 5
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.89 E-value=3.7e-23 Score=176.26 Aligned_cols=99 Identities=32% Similarity=0.494 Sum_probs=83.0
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHH
Q 028312 81 ELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAV 160 (210)
Q Consensus 81 el~~~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAV 160 (210)
|+++++++|++++||+||++|+|+++++.+......... +.....+++.+++++|+++++++|+++++||||+||||
T Consensus 1 ~~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~---~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaV 77 (227)
T PF00230_consen 1 ELKSPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSS---GSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAV 77 (227)
T ss_dssp GCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTT---STTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc---cccccccHHHHHHHHHHhhhhhhhhhhhccccccccch
Confidence 788999999999999999999999998766543322100 00112357789999999999999999999999999999
Q ss_pred HHHHHHhccCcchhhHHHHHHH
Q 028312 161 TFGLFLARKVSLVRAVMWGQRA 182 (210)
Q Consensus 161 Tfal~l~gkis~~r~~~YiiAQ 182 (210)
|+++++.|+++|.+++.|+++|
T Consensus 78 Tla~~l~g~~~~~~~~~Yi~aQ 99 (227)
T PF00230_consen 78 TLAFALTGRISWKKAIVYIIAQ 99 (227)
T ss_dssp HHHHHHTTSSSHHHHHHHHHHH
T ss_pred hhheeeeeeecccceeeEEeec
Confidence 9999999999999999999999
No 6
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.88 E-value=5e-22 Score=177.57 Aligned_cols=90 Identities=26% Similarity=0.389 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHH
Q 028312 84 KWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 163 (210)
Q Consensus 84 ~~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfa 163 (210)
.++++|++++||+||++|+|+++++++..... ....+.+.++++||+++++++|+++++||||+|||||++
T Consensus 38 ~~~~~~~~~aEflgTflLvf~g~g~~~~~~~~---------~~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla 108 (283)
T PLN00182 38 IVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLY---------GGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVT 108 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---------CCCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHH
Confidence 35899999999999999999999987643211 011246778999999999999999999999999999999
Q ss_pred HHHhccCcchhhHHHHHHH
Q 028312 164 LFLARKVSLVRAVMWGQRA 182 (210)
Q Consensus 164 l~l~gkis~~r~~~YiiAQ 182 (210)
+++.|+++|.++++||++|
T Consensus 109 ~~~~~~~~~~~~~~Yi~aQ 127 (283)
T PLN00182 109 FAIFRRFPWYQVPLYIGAQ 127 (283)
T ss_pred HHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999
No 7
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.87 E-value=2.1e-21 Score=174.21 Aligned_cols=94 Identities=26% Similarity=0.293 Sum_probs=80.3
Q ss_pred hhccc-hHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccCh
Q 028312 80 VELTK-WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINP 158 (210)
Q Consensus 80 ~el~~-~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNP 158 (210)
.|.++ ++++|++++||+||++|+|++++++++.... ....+.+.++++||+++++.+|+++++||||+||
T Consensus 41 ~~~~~~~~~~~~~laEfigT~llvf~g~g~~~~~~~~---------~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NP 111 (294)
T PTZ00016 41 WAPREYRPNVREYVAEFLGTFVLLFFGEGVVATTHTV---------GNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNP 111 (294)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---------CCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCH
Confidence 34434 6789999999999999999999887643211 0123466799999999999999999999999999
Q ss_pred HHHHHHHHhccCcchhhHHHHHHH
Q 028312 159 AVTFGLFLARKVSLVRAVMWGQRA 182 (210)
Q Consensus 159 AVTfal~l~gkis~~r~~~YiiAQ 182 (210)
|||+++++.++++|.++++|+++|
T Consensus 112 AVTla~~l~g~i~~~~~~~YiiaQ 135 (294)
T PTZ00016 112 AVTLGNAVFGKFPWKKLPGYFVAQ 135 (294)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999999999999999999
No 8
>PLN00167 aquaporin TIP5; Provisional
Probab=99.85 E-value=8.7e-21 Score=167.26 Aligned_cols=101 Identities=28% Similarity=0.399 Sum_probs=84.4
Q ss_pred chhhccchHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccC
Q 028312 78 DAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHIN 157 (210)
Q Consensus 78 ~~~el~~~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlN 157 (210)
+.++...++++|++++||+||++|+|+++++++...... .++.....+++.++++||+++++.+|++++|||+|+|
T Consensus 12 ~~~~~~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~----~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~N 87 (256)
T PLN00167 12 RFQQSVTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLM----PDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVN 87 (256)
T ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----ccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccC
Confidence 345556789999999999999999999999876432100 0111123457889999999999999999999999999
Q ss_pred hHHHHHHHHhccCcchhhHHHHHHH
Q 028312 158 PAVTFGLFLARKVSLVRAVMWGQRA 182 (210)
Q Consensus 158 PAVTfal~l~gkis~~r~~~YiiAQ 182 (210)
||||+++++.|+++|.++++|+++|
T Consensus 88 PAvtl~~~~~g~~~~~~~~~yi~aQ 112 (256)
T PLN00167 88 PAVTFGMAVGGHISVPTAMFYWISQ 112 (256)
T ss_pred HHHHHHHHHhCCCcHhhhhHHHHHH
Confidence 9999999999999999999999999
No 9
>PLN00026 aquaporin NIP; Provisional
Probab=99.84 E-value=1.2e-20 Score=169.72 Aligned_cols=89 Identities=22% Similarity=0.331 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHH
Q 028312 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (210)
Q Consensus 85 ~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal 164 (210)
++++|++++||+||++|+|+++++.+.... . ....+++.++++||+++++++|++++|||||+|||||+++
T Consensus 68 ~~~~r~~laEfiGTflLvf~g~~~~~~~~~-~--------~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~ 138 (298)
T PLN00026 68 VSLTRKLGAEFVGTFILIFAATAGPIVNQK-Y--------DGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAF 138 (298)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccc-c--------CCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHH
Confidence 578999999999999999999876442110 0 0112467789999999999999999999999999999999
Q ss_pred HHhccCcchhhHHHHHHH
Q 028312 165 FLARKVSLVRAVMWGQRA 182 (210)
Q Consensus 165 ~l~gkis~~r~~~YiiAQ 182 (210)
++.++++|.+.++||++|
T Consensus 139 al~g~~~~~~~~~YiiaQ 156 (298)
T PLN00026 139 AALRHFPWKHVPAYIAAQ 156 (298)
T ss_pred HHhCCCcHHHHHHHHHHH
Confidence 999999999999999999
No 10
>PRK05420 aquaporin Z; Provisional
Probab=99.84 E-value=1.6e-20 Score=163.09 Aligned_cols=87 Identities=30% Similarity=0.513 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHh
Q 028312 88 YRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLA 167 (210)
Q Consensus 88 ~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal~l~ 167 (210)
+|++++||+||++|+|+++++++..... +..+.+.+.++++||+++++++|+++++||+|+|||||+++++.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~--------~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~ 73 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAF--------PELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAG 73 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhccc--------CCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHh
Confidence 6899999999999999999876532211 01123567789999999999999999999999999999999999
Q ss_pred ccCcchhhHHHHHHH
Q 028312 168 RKVSLVRAVMWGQRA 182 (210)
Q Consensus 168 gkis~~r~~~YiiAQ 182 (210)
|+++|.++++|+++|
T Consensus 74 ~~i~~~~~~~Y~~aQ 88 (231)
T PRK05420 74 GRFPAKELVPYIIAQ 88 (231)
T ss_pred CCCCHHHhHHHHHHH
Confidence 999999999999999
No 11
>PLN00166 aquaporin TIP2; Provisional
Probab=99.84 E-value=3e-20 Score=163.33 Aligned_cols=101 Identities=31% Similarity=0.464 Sum_probs=83.8
Q ss_pred chhhccchHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccC
Q 028312 78 DAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHIN 157 (210)
Q Consensus 78 ~~~el~~~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlN 157 (210)
|.+|..+++.+|++++||++|++|+|+++++++......+ +......+++.+++++|+++++.+++++++||+|+|
T Consensus 8 ~~~~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~----~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~N 83 (250)
T PLN00166 8 SLGDSFSVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTS----DAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLN 83 (250)
T ss_pred chHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc----cccCCCCccHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 4456667899999999999999999999998765311110 011112346789999999999999999999999999
Q ss_pred hHHHHHHHHhccCcchhhHHHHHHH
Q 028312 158 PAVTFGLFLARKVSLVRAVMWGQRA 182 (210)
Q Consensus 158 PAVTfal~l~gkis~~r~~~YiiAQ 182 (210)
||||+++++.++++|.+.++|+++|
T Consensus 84 PAvt~~~~l~g~~~~~~~~~y~~aq 108 (250)
T PLN00166 84 PAVTLGLAIGGNITIITGFFYWIAQ 108 (250)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999
No 12
>PLN00027 aquaporin TIP; Provisional
Probab=99.83 E-value=4.3e-20 Score=162.21 Aligned_cols=101 Identities=33% Similarity=0.527 Sum_probs=83.2
Q ss_pred chhhccchHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccC
Q 028312 78 DAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHIN 157 (210)
Q Consensus 78 ~~~el~~~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlN 157 (210)
|..|...++.+|++++||++|++|+|+++++++......+ +......+++.++++||+++++.+++++++||+|+|
T Consensus 10 ~~~~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~----~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~N 85 (252)
T PLN00027 10 TPGEASHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTD----NGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVN 85 (252)
T ss_pred chHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc----CCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccC
Confidence 4455566789999999999999999999998764321110 001112356789999999999999999999999999
Q ss_pred hHHHHHHHHhccCcchhhHHHHHHH
Q 028312 158 PAVTFGLFLARKVSLVRAVMWGQRA 182 (210)
Q Consensus 158 PAVTfal~l~gkis~~r~~~YiiAQ 182 (210)
||||+++++.|+++|.+.++|+++|
T Consensus 86 PAvtl~~~~~g~~~~~~~~~yi~aQ 110 (252)
T PLN00027 86 PAVTFGAFIGGNITLLRGILYWIAQ 110 (252)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999
No 13
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.83 E-value=6.3e-20 Score=163.39 Aligned_cols=121 Identities=21% Similarity=0.310 Sum_probs=90.1
Q ss_pred ccccccccCCCCCCCCCCCCCCC-Ccch-hhccchHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcch
Q 028312 53 KDTGVAEHGSYSAKDYTDPPPEP-LFDA-VELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGI 130 (210)
Q Consensus 53 ~~~~~~~~~~~~~kdy~~pppap-~~~~-~el~~~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~ 130 (210)
.|++.|+++..++.+-+|.|-.. +++- .-.-+.+.+|++++||++|++|+|++++++...... ....++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~---------~~~~~~ 78 (274)
T PLN00183 8 RDVDQEAGSTASTLNGDDHPKRQRLFGCLPYDMDLNPARMVLAEMVGTFILMFCVCGIIASTQLS---------GGEVGL 78 (274)
T ss_pred hhhhhhhcCCCCcccCCCCchhhhhccccCCcCChHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------CCccch
Confidence 34443334444455555555332 2211 112345788999999999999999999876542211 112356
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhccCcchhhHHHHHHH
Q 028312 131 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMWGQRA 182 (210)
Q Consensus 131 l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal~l~gkis~~r~~~YiiAQ 182 (210)
+.+++++|+++++.+++++++||+|+|||||+++++.++++|.++++||++|
T Consensus 79 ~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g~i~~~~~~~Yi~aQ 130 (274)
T PLN00183 79 LEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFGHFPWSKVPLYITAQ 130 (274)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 7789999999999999999999999999999999999999999999999999
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.79 E-value=5.1e-19 Score=152.19 Aligned_cols=86 Identities=42% Similarity=0.662 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhc
Q 028312 89 RALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR 168 (210)
Q Consensus 89 Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal~l~g 168 (210)
|++++||++|++|+|+++++++...... + .+.+++.++++||+++++++|+++++||+|+|||||+++++.+
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~------~--~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~ 72 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAG------G--ASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGG 72 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccC------C--CCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhC
Confidence 5789999999999999999876533211 0 1234677899999999999999999999999999999999999
Q ss_pred cCcchhhHHHHHHH
Q 028312 169 KVSLVRAVMWGQRA 182 (210)
Q Consensus 169 kis~~r~~~YiiAQ 182 (210)
+++|.+.++|+++|
T Consensus 73 ~~~~~~~~~y~~aq 86 (228)
T cd00333 73 RFPLIRVIPYIIAQ 86 (228)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999999
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.74 E-value=1.2e-17 Score=142.73 Aligned_cols=86 Identities=38% Similarity=0.658 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHHHhccCcc
Q 028312 93 AEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL 172 (210)
Q Consensus 93 AEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal~l~gkis~ 172 (210)
+||++|++|+|+++++++....+.. . ...+..+++.++++||+++++.+++++++||+|+|||||+++++.++++|
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~---~-~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~ 76 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGA---Y-GAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPL 76 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccc---c-CCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCH
Confidence 5999999999999998775332210 0 00111246789999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHH
Q 028312 173 VRAVMWGQRA 182 (210)
Q Consensus 173 ~r~~~YiiAQ 182 (210)
.++++|+++|
T Consensus 77 ~~~~~y~~aQ 86 (216)
T TIGR00861 77 KRVPVYIVAQ 86 (216)
T ss_pred HHHHHHHHHH
Confidence 9999999999
No 16
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.53 E-value=2.4e-14 Score=123.22 Aligned_cols=86 Identities=20% Similarity=0.140 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHH
Q 028312 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (210)
Q Consensus 85 ~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal 164 (210)
.+.++++++||++|++|+++++++....+. .......++++|+++.+++++++++||+|+|||+|+++
T Consensus 127 ~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~------------~~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~ 194 (228)
T cd00333 127 VSNGNAFFVEFIGTFILVLVVFATTDDPNG------------PPPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGP 194 (228)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcccccc------------CCCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHH
Confidence 577999999999999999998876432110 01122478999999999999999999999999999999
Q ss_pred HHhccC--cchhhHHHHHHH
Q 028312 165 FLARKV--SLVRAVMWGQRA 182 (210)
Q Consensus 165 ~l~gki--s~~r~~~YiiAQ 182 (210)
.+.++. +|.+.|+||++|
T Consensus 195 ~i~~~~~~~~~~~~vy~vap 214 (228)
T cd00333 195 ALFTGLARHWHYFWVYWVGP 214 (228)
T ss_pred HHHhccccccceeehhhhHH
Confidence 999998 799999999999
No 17
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.50 E-value=6.9e-14 Score=125.29 Aligned_cols=82 Identities=24% Similarity=0.288 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHH
Q 028312 86 SFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 165 (210)
Q Consensus 86 sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal~ 165 (210)
+.++++++||++|++|+|++++.... .. . . +. ..++++|+++++++++++++||+|+|||+||+++
T Consensus 157 s~~~a~~~E~l~TfiLv~~i~~~~~~-~~--------~-~---~~-~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpa 222 (283)
T PLN00182 157 SSGQALVAEIIISFLLMFVISGVATD-SR--------A-V---GE-LAGIAVGMTIILNVFVAGPISGASMNPARSLGPA 222 (283)
T ss_pred chHHHHHHHHHHHHHHHHHHHhheec-cc--------c-C---Cc-chhHHHHHHHHHHHHHccccCccccChHHHHHHH
Confidence 56899999999999999988765422 10 0 0 11 2678999999999999999999999999999999
Q ss_pred HhccCcchhhHHHHHHH
Q 028312 166 LARKVSLVRAVMWGQRA 182 (210)
Q Consensus 166 l~gkis~~r~~~YiiAQ 182 (210)
+.+. .|.+.|+||++|
T Consensus 223 l~~~-~~~~~wvY~vap 238 (283)
T PLN00182 223 IVMG-RYKGIWVYIVGP 238 (283)
T ss_pred HHhc-cccceeHHHHHH
Confidence 9865 588999999999
No 18
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.48 E-value=1e-13 Score=118.49 Aligned_cols=91 Identities=20% Similarity=0.169 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHH
Q 028312 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (210)
Q Consensus 85 ~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal 164 (210)
.+.+++++.|+++|++|+++.+......+. .. .....++++|+.+++++++++++||+|+|||+|+++
T Consensus 119 ~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~----------~~--~~~~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~ 186 (216)
T TIGR00861 119 VSSGQAFFVEFIGTAILVLVIFATTDPRNR----------VP--RGGFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGP 186 (216)
T ss_pred ccHHHHHHHHHHHHHHHHHHHheeecCCCC----------CC--CCccHHHHHHHHHHHHHHhCCCCcccccCchhhhhH
Confidence 477999999999999999988765432110 00 111478999999999999999999999999999999
Q ss_pred HHhc-cCcchhhHHHHHHH--HHHHH
Q 028312 165 FLAR-KVSLVRAVMWGQRA--GRWVQ 187 (210)
Q Consensus 165 ~l~g-kis~~r~~~YiiAQ--ga~l~ 187 (210)
.+.+ ..+|.+.|+||++| |+.++
T Consensus 187 ~l~~~~~~~~~~~vy~vap~~Ga~~a 212 (216)
T TIGR00861 187 ALFAGLAGWGNHWVYWVGPIIGAILG 212 (216)
T ss_pred HHHhccccccceeHHHHHHHHHHHHH
Confidence 9986 57899999999999 44443
No 19
>PLN00026 aquaporin NIP; Provisional
Probab=99.43 E-value=5e-13 Score=120.62 Aligned_cols=83 Identities=22% Similarity=0.269 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHH
Q 028312 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (210)
Q Consensus 85 ~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal 164 (210)
.+.+++++.||++|++++++++++... .. . . +. ..++++|+++++++++++++||+|+|||+||++
T Consensus 184 ~s~~~a~~~Efi~TfiLv~vi~~v~~~-~~--------~-~---~~-~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgP 249 (298)
T PLN00026 184 VSTGQAFALEFIITFNLLFVVTAVATD-TR--------A-V---GE-LAGIAVGATVMLNILVAGPSTGGSMNPVRTLGP 249 (298)
T ss_pred ccHHHHHHHHHHHHHHHHHhheeeecC-CC--------C-c---CC-ccchHHHHHHHHHHHHhcccCccccChHHHHHH
Confidence 367899999999999999988753211 10 0 0 11 256889999999999999999999999999999
Q ss_pred HHhccCcchhhHHHHHHH
Q 028312 165 FLARKVSLVRAVMWGQRA 182 (210)
Q Consensus 165 ~l~gkis~~r~~~YiiAQ 182 (210)
++... +|...|+||++|
T Consensus 250 al~~~-~~~~~wVy~vaP 266 (298)
T PLN00026 250 AVAAG-NYRAIWIYLVAP 266 (298)
T ss_pred HHhcC-CchheeHHHHHH
Confidence 99986 899999999999
No 20
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.41 E-value=5.2e-13 Score=119.16 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHH
Q 028312 86 SFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 165 (210)
Q Consensus 86 sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal~ 165 (210)
+.++++++||++|++++++++++..... ..+. ..++++|+++++.+++++++||+|+|||+||+++
T Consensus 159 ~~~~~~~~E~v~T~iLv~~i~~~~~~~~-------------~~~~-~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpa 224 (274)
T PLN00183 159 GCSSAFWVEFIATFIVMFLAASLTSQPQ-------------SLGH-LSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPA 224 (274)
T ss_pred cHHHHHHHHHHHHHHHHHhhheeecccc-------------CCCC-ceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHH
Confidence 3578999999999999999876543210 0011 2467899999999999999999999999999999
Q ss_pred HhccCcchhhHHHHHHH
Q 028312 166 LARKVSLVRAVMWGQRA 182 (210)
Q Consensus 166 l~gkis~~r~~~YiiAQ 182 (210)
+.+ .+|.+.|+||++|
T Consensus 225 i~~-~~~~~~wvy~vap 240 (274)
T PLN00183 225 IVS-WDFKDIWIYITAP 240 (274)
T ss_pred HhC-CChhheehHHHHH
Confidence 987 5899999999999
No 21
>PLN00184 aquaporin NIP1; Provisional
Probab=99.20 E-value=6.5e-11 Score=106.81 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHH
Q 028312 86 SFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 165 (210)
Q Consensus 86 sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal~ 165 (210)
+.+++++.|+++|++|+++.+++..... ..+. ..++++|+.+++++++.+++||+.+|||++|++.
T Consensus 176 s~~~af~~E~i~TfvLv~~il~~~~~~~-------------~~~~-~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPa 241 (296)
T PLN00184 176 SDLQAFVMEFIVTFYLMFIISGVATDNR-------------AIGE-LAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPA 241 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHheeccCc-------------CCCc-chHHHHHHHHHHHHHHhcccCccccCchhhHHHH
Confidence 6789999999999999998876532110 0011 2578999999999999999999999999999999
Q ss_pred HhccCcchhhHHHHHHH
Q 028312 166 LARKVSLVRAVMWGQRA 182 (210)
Q Consensus 166 l~gkis~~r~~~YiiAQ 182 (210)
+... .|...|+||++|
T Consensus 242 l~~~-~~~~~WVy~vgP 257 (296)
T PLN00184 242 MVYG-CYKGIWIYIVAP 257 (296)
T ss_pred HHhh-cccccchHHhHH
Confidence 9755 578899999999
No 22
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.14 E-value=4.3e-11 Score=105.15 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHH
Q 028312 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (210)
Q Consensus 85 ~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal 164 (210)
.+-++.++.|++.||.++|..+++..... .+ ...++++|+++.+.+++.+++||+++|||+||+.
T Consensus 129 ~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~------------~~---~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGp 193 (238)
T KOG0223|consen 129 LSTGQGLVIEIILTFILVFTVFATATDPR------------RS---ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGP 193 (238)
T ss_pred CCcchhHHHHHHHHHHHhheeEEEeecCC------------Cc---ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhH
Confidence 46689999999999999998876443211 11 3478999999999999999999999999999999
Q ss_pred HHhccCcchhhHHHHHHH
Q 028312 165 FLARKVSLVRAVMWGQRA 182 (210)
Q Consensus 165 ~l~gkis~~r~~~YiiAQ 182 (210)
++..+. |...|+||++|
T Consensus 194 Avv~~~-w~~hwiYwvgP 210 (238)
T KOG0223|consen 194 AVVYGS-WDDHWIYWVGP 210 (238)
T ss_pred HHHhcC-CCcEEEEEhhH
Confidence 999884 99999999999
No 23
>PLN00166 aquaporin TIP2; Provisional
Probab=99.09 E-value=5.8e-10 Score=98.32 Aligned_cols=85 Identities=18% Similarity=0.242 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHH
Q 028312 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (210)
Q Consensus 85 ~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal 164 (210)
.+.+++++.|+++|+++++..++.....+. ... ....+++.|+.+++++.+.++.||+.+|||++|+.
T Consensus 137 ~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~-----------~~~-~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gP 204 (250)
T PLN00166 137 LGAIEGVVMEIVVTFALVYTVYATAADPKK-----------GSL-GTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGP 204 (250)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhcccccc-----------ccc-ccchhHHHHHHHHHHHHcccCCCCCccCchHhhHH
Confidence 367899999999999999988765321110 000 11367889999999999999999999999999999
Q ss_pred HHhccCcchhhHHHHHHH
Q 028312 165 FLARKVSLVRAVMWGQRA 182 (210)
Q Consensus 165 ~l~gkis~~r~~~YiiAQ 182 (210)
.+... .|...|+||++|
T Consensus 205 al~~~-~~~~~wvywvgP 221 (250)
T PLN00166 205 AVVSG-DFSQIWIYWVGP 221 (250)
T ss_pred HHhcC-CCcccchhhHHH
Confidence 99875 588999999999
No 24
>PLN00027 aquaporin TIP; Provisional
Probab=99.03 E-value=1.9e-09 Score=94.99 Aligned_cols=85 Identities=19% Similarity=0.300 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHH
Q 028312 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (210)
Q Consensus 85 ~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal 164 (210)
.+.+++++.|+++|+++++..+......+. ...+ ...+++.|+.+..++++.++.||+.+|||++|++
T Consensus 139 ~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~-----------~~~~-~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gP 206 (252)
T PLN00027 139 VGVWNAFVFEIVMTFGLVYTVYATAVDPKK-----------GDLG-IIAPIAIGFIVGANILAGGAFDGASMNPAVSFGP 206 (252)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccc-----------CCcc-chHHHHHHHHHHHHHHhcccccccccCcchhHHH
Confidence 367899999999999999987654321110 0001 1468889999999999999999999999999999
Q ss_pred HHhccCcchhhHHHHHHH
Q 028312 165 FLARKVSLVRAVMWGQRA 182 (210)
Q Consensus 165 ~l~gkis~~r~~~YiiAQ 182 (210)
.+... .|...|+||++|
T Consensus 207 al~~~-~~~~~wvy~vgP 223 (252)
T PLN00027 207 AVVSW-TWTNHWVYWAGP 223 (252)
T ss_pred HHHhh-cchhhhHHHHHH
Confidence 99875 688999999999
No 25
>PRK05420 aquaporin Z; Provisional
Probab=98.98 E-value=2.2e-09 Score=93.43 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHH
Q 028312 86 SFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 165 (210)
Q Consensus 86 sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal~ 165 (210)
+..++++.|+++|+++++..++.... .+ ..+ ..++..|+.++++.++.++.||+-+|||++|++.
T Consensus 130 ~~~~~~~~E~v~T~iLv~~i~~~~~~--~~-----------~~~--~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpa 194 (231)
T PRK05420 130 SLLAALVCEVVLTAFFLLVILGATDK--RA-----------PAG--FAPIAIGLALTLIHLISIPVTNTSVNPARSTGVA 194 (231)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCC--CC-----------CCc--chHHHHHHHHHHHHHHhhccCCCccCcHHHHHHH
Confidence 57899999999999999988765321 10 011 2678899999999999999999999999999999
Q ss_pred Hhcc-CcchhhHHHHHHH
Q 028312 166 LARK-VSLVRAVMWGQRA 182 (210)
Q Consensus 166 l~gk-is~~r~~~YiiAQ 182 (210)
+... ..|...|+||++|
T Consensus 195 l~~g~~~~~~~wvy~vgP 212 (231)
T PRK05420 195 LFVGGWALEQLWLFWVAP 212 (231)
T ss_pred HHhCCCCccceEEeehHH
Confidence 9753 3445789999999
No 26
>PLN00167 aquaporin TIP5; Provisional
Probab=98.91 E-value=3e-09 Score=94.19 Aligned_cols=84 Identities=19% Similarity=0.134 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHH
Q 028312 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (210)
Q Consensus 85 ~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal 164 (210)
.+.+++++.|+++|+++++..+..... .. . .. ....++.+|+.++++.++.+++||+.+|||++|++
T Consensus 141 ~s~~~~~~~E~i~T~~L~~~i~~~~~~--~~-------~---~~-~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gP 207 (256)
T PLN00167 141 MTGFGASVLEGVLTFGLVYTVYAAGDP--RR-------G---LL-GAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGS 207 (256)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccc--cc-------c---CC-CCcchHHHHHHHHHHHHhccCCCCcccCcccchHH
Confidence 355789999999999999987643211 10 0 00 01257888999999999999999999999999999
Q ss_pred HHhccCcchhhHHHHHHH
Q 028312 165 FLARKVSLVRAVMWGQRA 182 (210)
Q Consensus 165 ~l~gkis~~r~~~YiiAQ 182 (210)
.+... +|...|+||++|
T Consensus 208 al~~~-~~~~~wvywvgP 224 (256)
T PLN00167 208 AVVAG-SFKNQAVYWVGP 224 (256)
T ss_pred HHhcc-CccCcEEEeHHH
Confidence 99865 688889999999
No 27
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=98.86 E-value=1e-08 Score=87.54 Aligned_cols=85 Identities=21% Similarity=0.228 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHH
Q 028312 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (210)
Q Consensus 85 ~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal 164 (210)
.+.+++++.|+++|++|++........... ...+. ..++.+|+.+.++++..++.||+.+|||++++.
T Consensus 132 ~s~~~~~~~E~~~t~il~~~i~~~~~~~~~-----------~~~~~-~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~ 199 (227)
T PF00230_consen 132 ISLGQAFFSEFIGTFILVLVILAVADDKRK-----------FPLGP-LAPLAIGLTVGALVLAGGPYTGASLNPARALGP 199 (227)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHTSTTSS-----------STSSG-GHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHH
T ss_pred chhhhhhhhhhhhhhHHHhhhhhhcccccc-----------ccccc-ccceeEEEEEeecccccccccccccCchhhcCc
Confidence 367899999999999999987655432111 01111 367888999999999999999999999999999
Q ss_pred HHhccCcchhhHHHHHHH
Q 028312 165 FLARKVSLVRAVMWGQRA 182 (210)
Q Consensus 165 ~l~gkis~~r~~~YiiAQ 182 (210)
.+.... |...|+||+++
T Consensus 200 ~l~~~~-~~~~wvy~~~P 216 (227)
T PF00230_consen 200 ALFSGI-WDYFWVYWVGP 216 (227)
T ss_dssp HHHHTH-HTTTTHHHHHH
T ss_pred eeeccc-CCeEEEEEehH
Confidence 998775 99999999999
No 28
>PTZ00016 aquaglyceroporin; Provisional
Probab=98.82 E-value=1.2e-08 Score=91.90 Aligned_cols=85 Identities=20% Similarity=0.169 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHH
Q 028312 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (210)
Q Consensus 85 ~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal 164 (210)
.+.+++++.|+++|+++++..++.....+ . . ..+ ..+++.|+.++++.++.++.||+-+|||++|++
T Consensus 181 ~s~~~a~~~E~i~T~iLv~~ila~~d~~~--~------~---~~~--~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGP 247 (294)
T PTZ00016 181 EGNFYAIFSELILTAILLLVILAITDPNN--C------P---AFN--YLPVAVGLLVFVIGISFGGNTGYALNPARDLGP 247 (294)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhccCcc--C------C---CcC--cccHHHHHHHHHHHHhccCCCCCcccchhhHHH
Confidence 46789999999999999998775532110 0 0 011 256778999988999999999999999999999
Q ss_pred HHhc-----cCcch----hhHHHHHHH
Q 028312 165 FLAR-----KVSLV----RAVMWGQRA 182 (210)
Q Consensus 165 ~l~g-----kis~~----r~~~YiiAQ 182 (210)
.+.. +-.|. ..|+||+++
T Consensus 248 al~~~~~~g~~~~~~~~~~~WVy~vgP 274 (294)
T PTZ00016 248 RLFSAILWGSEVFTKDNYYFWVPLVAP 274 (294)
T ss_pred HHHHHHhccccccCcCCceeeeeehHH
Confidence 9874 22444 479999999
No 29
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=98.54 E-value=2.8e-07 Score=81.37 Aligned_cols=83 Identities=20% Similarity=0.176 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHHH
Q 028312 86 SFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 165 (210)
Q Consensus 86 sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal~ 165 (210)
+.+++++.|+++|++|++...+..... ....+ ..++.+|+.++.+..+.++.||.-+|||++++..
T Consensus 134 ~~~~~fl~E~v~T~~L~~~Ila~~~~~------------~~~~~--~apl~iGllv~~i~~s~g~~TG~aiNPARdlGpr 199 (241)
T COG0580 134 SLGQAFLIEFVGTFVLVLGILALTDDG------------NANAG--FAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPR 199 (241)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhccC------------ccccc--chHHHHHHHHHHHHHHhcCCCCCccChHHHHHHH
Confidence 779999999999999999877643210 00112 3788999999999999999999999999999999
Q ss_pred HhccC----cc----hhhHHHHHHH
Q 028312 166 LARKV----SL----VRAVMWGQRA 182 (210)
Q Consensus 166 l~gki----s~----~r~~~YiiAQ 182 (210)
+...+ .. ..+|+||++|
T Consensus 200 l~~~~~g~~~~~g~~~y~wipvigp 224 (241)
T COG0580 200 LAHSLAGWAANKGDSSYFWIPVIGP 224 (241)
T ss_pred HHHHhcCcccCCCCCCeEeeeehHH
Confidence 84322 11 3699999999
No 30
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=95.45 E-value=0.023 Score=52.10 Aligned_cols=70 Identities=17% Similarity=0.149 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccChHHHHHH
Q 028312 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (210)
Q Consensus 85 ~sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~ISGgHlNPAVTfal 164 (210)
.+++++++-||+||.+|++..+......+ +.. .-..++.+|+.++++-.+.|-=+|--+|||+.|++
T Consensus 165 ls~~n~F~DqfigTa~L~~~l~aI~D~rN-----------~~p--~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgP 231 (316)
T KOG0224|consen 165 LSLWNGFFDQFIGTAMLVLCLFAITDKRN-----------PIP--TGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGP 231 (316)
T ss_pred hhhhHHHHHHHHHHHHHHhheeEEecCCC-----------CCC--cchhHHHHHHHHHHHHHHhhcccCcccCcccccch
Confidence 48899999999999999888765432221 111 12367888988888888888889999999999997
Q ss_pred HHh
Q 028312 165 FLA 167 (210)
Q Consensus 165 ~l~ 167 (210)
=+.
T Consensus 232 RlF 234 (316)
T KOG0224|consen 232 RLF 234 (316)
T ss_pred HHH
Confidence 664
No 31
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=66.13 E-value=7.4 Score=32.37 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=34.9
Q ss_pred CCchhHHhHHHHHHhhhhhhhhhhhhhhhhhhHhhhhhcccc
Q 028312 10 NKPKKRKRKRKRKRLLSRCACGFAVLSVFSVSLQIIVTGFPM 51 (210)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m 51 (210)
..-|||.|+-||=|++...+-.++++..+..-..|..+|++=
T Consensus 3 ~~lkkR~~~e~rFr~~g~~Ai~~~l~fL~~ll~sI~~~G~~A 44 (155)
T PF11812_consen 3 ARLKKRYRAERRFRAYGLAAIAIALAFLVILLFSIVSKGYPA 44 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 345788888888899999988888888888888899999873
No 32
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=64.51 E-value=2.2 Score=32.54 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.6
Q ss_pred CCCcccChHHHHHHHHhcc
Q 028312 151 ISGGHINPAVTFGLFLARK 169 (210)
Q Consensus 151 ISGgHlNPAVTfal~l~gk 169 (210)
=|+||+||.+.++-.|.++
T Consensus 7 Gt~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 7 GTRGHVYPFLALARALRRR 25 (139)
T ss_dssp SSHHHHHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHhcc
Confidence 4889999999999999754
No 33
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=59.89 E-value=2.1 Score=39.09 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=18.2
Q ss_pred HhcCCCCcccChHHHHHHHHhc
Q 028312 147 CTAGISGGHINPAVTFGLFLAR 168 (210)
Q Consensus 147 ~~g~ISGgHlNPAVTfal~l~g 168 (210)
.++|=+|||+.||++++-.+..
T Consensus 6 ~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 6 FTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EEcCCcHHHHHHHHHHHHHHHh
Confidence 3466699999999999988864
No 34
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=58.32 E-value=15 Score=31.58 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=12.9
Q ss_pred ccCCCc---hhHHhHHHHHHhhhhh
Q 028312 7 HTKNKP---KKRKRKRKRKRLLSRC 28 (210)
Q Consensus 7 ~~~~~~---~~~~~~~~~~~~~~~~ 28 (210)
.|+||| +++|||.|||.+..-+
T Consensus 134 dt~nkPi~~~~~rk~lK~~sii~~~ 158 (210)
T PRK01100 134 DTESLPLIGEKLRKTLKRKAMIGGL 158 (210)
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHH
Confidence 588998 4545555555554333
No 35
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=55.04 E-value=15 Score=25.90 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=25.5
Q ss_pred ccCCCchhHHhHHHHHHhhhhhhhhhhhhhhhhhh
Q 028312 7 HTKNKPKKRKRKRKRKRLLSRCACGFAVLSVFSVS 41 (210)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (210)
+++++..+.+|++..|.++--.++-+-++|+..|+
T Consensus 4 ~~~~~~~~~~k~~E~~~flfl~~~l~PiL~v~~Vg 38 (56)
T PF06796_consen 4 QPKSESDKSTKRSELKAFLFLAVVLFPILAVAFVG 38 (56)
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454446666677777888888888899888775
No 36
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=43.57 E-value=4.1 Score=40.24 Aligned_cols=30 Identities=33% Similarity=0.455 Sum_probs=19.4
Q ss_pred HhhhhhhhhhhhhhhhhhhHhhhhhcccccc
Q 028312 23 RLLSRCACGFAVLSVFSVSLQIIVTGFPMAK 53 (210)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~ 53 (210)
|..+|- -.|.-++.-+.+++|++-.++|.+
T Consensus 230 ~~~sr~-SSfSSiTdSsmslnIITV~LnMe~ 259 (626)
T KOG3571|consen 230 RVPSRA-SSFSSITDSSMSLNIITVTLNMET 259 (626)
T ss_pred Cccccc-cccccccccccceeEEEEEecccc
Confidence 335553 344445555678899988888866
No 37
>PF13786 DUF4179: Domain of unknown function (DUF4179); PDB: 3FBQ_A.
Probab=42.40 E-value=8.3 Score=28.07 Aligned_cols=6 Identities=50% Similarity=1.071 Sum_probs=0.0
Q ss_pred HHHHHh
Q 028312 19 RKRKRL 24 (210)
Q Consensus 19 ~~~~~~ 24 (210)
+++++.
T Consensus 8 ~~~~~~ 13 (94)
T PF13786_consen 8 KKKKRI 13 (94)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 38
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=40.31 E-value=28 Score=28.59 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=5.9
Q ss_pred ccCCCchhHHh
Q 028312 7 HTKNKPKKRKR 17 (210)
Q Consensus 7 ~~~~~~~~~~~ 17 (210)
.++|||-.+++
T Consensus 122 ~~~~kpl~~~e 132 (185)
T PF04647_consen 122 DTPNKPLDSEE 132 (185)
T ss_pred ccccCcCChHH
Confidence 35677653333
No 39
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=39.29 E-value=28 Score=29.10 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=5.3
Q ss_pred ccCCCchh
Q 028312 7 HTKNKPKK 14 (210)
Q Consensus 7 ~~~~~~~~ 14 (210)
.|+|||-+
T Consensus 122 ~~~~kpi~ 129 (184)
T smart00793 122 DTEKQPVI 129 (184)
T ss_pred ccccCCCC
Confidence 57888833
No 40
>COG3817 Predicted membrane protein [Function unknown]
Probab=35.74 E-value=2.6e+02 Score=25.75 Aligned_cols=94 Identities=22% Similarity=0.217 Sum_probs=56.3
Q ss_pred CCCCCCCCcchhhccchHHHHHHHHHHHHHHHHHHH--HhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 028312 69 TDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYV--TVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVY 146 (210)
Q Consensus 69 ~~pppap~~~~~el~~~sl~Ra~lAEFigTfLfvfi--~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy 146 (210)
.++|.++.-|.+.+.+.--|-..+=+.++++=.+|. ++|.+++...+.- .+ .+ ..-.-..+.+.|+.++..+.
T Consensus 147 ~~~p~~~~~E~~rl~d~v~wa~iLPQ~LaaLG~vFa~aGvG~~ia~L~~~~--i~-~D--srfiaV~~Y~vgMalfTmiM 221 (313)
T COG3817 147 KQTPKAAVQEARRLMDQVSWAAILPQMLAALGAVFASAGVGDVIAHLISEI--IP-AD--SRFIAVAAYCVGMALFTMIM 221 (313)
T ss_pred ccChhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH--cc-cc--hhHHHHHHHHHHHHHHHHHH
Confidence 456667777777777766788889999999888886 4555554433211 00 11 11122345667887777664
Q ss_pred ---------HhcCCCC------cccChHHHHHHHHh
Q 028312 147 ---------CTAGISG------GHINPAVTFGLFLA 167 (210)
Q Consensus 147 ---------~~g~ISG------gHlNPAVTfal~l~ 167 (210)
++++|.= =|-||||-=+....
T Consensus 222 GNaFAAFpViTagIgvPilv~q~ganPaV~~AigM~ 257 (313)
T COG3817 222 GNAFAAFPVITAGIGVPILVGQLGANPAVAGAIGML 257 (313)
T ss_pred cccchhceeeecccccceeeeccCCChHHHHHHHHH
Confidence 2333311 37899997665543
No 41
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.03 E-value=13 Score=37.38 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=6.7
Q ss_pred CcccChHHHHHHHH
Q 028312 153 GGHINPAVTFGLFL 166 (210)
Q Consensus 153 GgHlNPAVTfal~l 166 (210)
.=|+|--++++-+.
T Consensus 281 PYHvdsLLqva~~~ 294 (665)
T KOG2422|consen 281 PYHVDSLLQVADIF 294 (665)
T ss_pred CcchhHHHHHHHHH
Confidence 34555444444443
No 42
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=30.40 E-value=4.2e+02 Score=24.07 Aligned_cols=96 Identities=15% Similarity=0.077 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcC-CCCcccChHHHHHH
Q 028312 86 SFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAG-ISGGHINPAVTFGL 164 (210)
Q Consensus 86 sl~Ra~lAEFigTfLfvfi~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy~~g~-ISGgHlNPAVTfal 164 (210)
.++++.+|=++-++-+++...... .. ++...+...+..+.+|++++...+++-+- .+| |=-.+..-
T Consensus 30 ~~l~ai~AG~~i~lg~~~~~~~~~---~~-------~~~~~~~~~lvg~~~F~~GLilVv~~g~ELfT~---n~m~~t~~ 96 (265)
T COG2116 30 LLLLAILAGAFIGLGFLFYITVGT---GL-------PGAPGGLAKLVGGLVFSLGLILVVIAGSELFTS---NTMLLTVG 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---cC-------CCCCcchHHHHHHHHHHHHHHHhhhhCcccccc---chhHHHHH
Confidence 456666665555555444332111 00 11123335677888888888888877554 233 32223333
Q ss_pred HHhccCcchhhHHHHHHH-------HHHHHhHhhhhc
Q 028312 165 FLARKVSLVRAVMWGQRA-------GRWVQHRRWIGR 194 (210)
Q Consensus 165 ~l~gkis~~r~~~YiiAQ-------ga~l~y~~~~~~ 194 (210)
...++++|.+.+--|+-= ..+++|+.|+..
T Consensus 97 ~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g 133 (265)
T COG2116 97 VLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSG 133 (265)
T ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456788887766444333 244555555554
No 43
>PF05966 Chordopox_A33R: Chordopoxvirus A33R protein; InterPro: IPR009238 This family consists of several Chordopoxvirus A33R proteins. A33R plays a role in promoting Ab-resistant cell-to-cell spread of virus [] and interacts with A36R to incorporate the protein into the outer membrane of intracellular enveloped virions (IEV) [].; PDB: 3K7B_A.
Probab=30.16 E-value=17 Score=31.45 Aligned_cols=37 Identities=32% Similarity=0.432 Sum_probs=0.0
Q ss_pred eeecccC--CCchhHHhHHHHHHhhhhhhhhhhhhhhhh
Q 028312 3 AFISHTK--NKPKKRKRKRKRKRLLSRCACGFAVLSVFS 39 (210)
Q Consensus 3 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (210)
+|++.|- +|+|.+|+++|++|.++-|-=-.+++|.+|
T Consensus 18 ~f~gsTiYg~klk~kk~~~kk~r~i~l~lRI~ii~SilS 56 (190)
T PF05966_consen 18 AFFGSTIYGKKLKRKKTKKKKRRCISLFLRISIIISILS 56 (190)
T ss_dssp ---------------------------------------
T ss_pred eeeeeeeecccccccchhHHhHHHHHHHHHHHHHHHHHH
Confidence 3444442 344434444566666655544444444433
No 44
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=29.86 E-value=1.9e+02 Score=24.12 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 028312 130 ILGIAWAFGGMIFVLVYC 147 (210)
Q Consensus 130 ~l~iAlafGl~I~vlIy~ 147 (210)
.+.....||+++.-+-|-
T Consensus 100 ~~~S~~~Fg~gllGisYG 117 (153)
T PF11947_consen 100 LLVSLVFFGLGLLGISYG 117 (153)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 455566677776555443
No 45
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=29.40 E-value=33 Score=30.51 Aligned_cols=8 Identities=75% Similarity=1.514 Sum_probs=4.6
Q ss_pred CCCCCCCC
Q 028312 69 TDPPPEPL 76 (210)
Q Consensus 69 ~~pppap~ 76 (210)
.||||.|+
T Consensus 11 ~Dpp~~pl 18 (243)
T PF15468_consen 11 VDPPPIPL 18 (243)
T ss_pred ecCCCccc
Confidence 45666664
No 46
>KOG4647 consensus Uncharacterized membrane protein [Function unknown]
Probab=28.28 E-value=91 Score=28.05 Aligned_cols=37 Identities=32% Similarity=0.520 Sum_probs=29.9
Q ss_pred CCCCCCCcchhhccchHHHHHHHHHHHHHHHHHHHHh
Q 028312 70 DPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTV 106 (210)
Q Consensus 70 ~pppap~~~~~el~~~sl~Ra~lAEFigTfLfvfi~~ 106 (210)
.+|-.|+.|-.|.---++||.++||.+--|++.++=.
T Consensus 77 ~~~~~~R~~g~eyv~~sf~~R~~AE~IDffilf~~K~ 113 (263)
T KOG4647|consen 77 LQPAQPRVDGVEYVAASFLRRLLAELIDFFILFSFKL 113 (263)
T ss_pred CCccccccCceeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3555678888898888999999999999888777533
No 47
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=27.04 E-value=35 Score=31.79 Aligned_cols=23 Identities=43% Similarity=0.670 Sum_probs=19.9
Q ss_pred HhcCCCCcccChHHHHHHHHhcc
Q 028312 147 CTAGISGGHINPAVTFGLFLARK 169 (210)
Q Consensus 147 ~~g~ISGgHlNPAVTfal~l~gk 169 (210)
.+++.+|||+=||.+++-.+..+
T Consensus 5 l~~gGTGGHv~pAlAl~~~l~~~ 27 (357)
T COG0707 5 LTAGGTGGHVFPALALAEELAKR 27 (357)
T ss_pred EEeCCCccchhHHHHHHHHHHhh
Confidence 45778999999999999998765
No 48
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=25.01 E-value=2.8e+02 Score=25.18 Aligned_cols=19 Identities=5% Similarity=0.204 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 028312 92 IAEFIATLLFLYVTVLTVI 110 (210)
Q Consensus 92 lAEFigTfLfvfi~~gtvi 110 (210)
++.-+++++|.++++.-..
T Consensus 270 la~Pl~~l~l~llavpl~~ 288 (366)
T PRK15120 270 LTLVFSVFIMALMVVPLSV 288 (366)
T ss_pred HHHHHHHHHHHHHHhhhcc
Confidence 6667888888888765543
No 49
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=23.86 E-value=3e+02 Score=25.54 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=39.5
Q ss_pred HhhhhhhhhhhhhhhhhhhHhhhhhcccccccccccccCCCCCCCCCCCCCCCCcchhhccchH-HHHHHHHHHHHHHHH
Q 028312 23 RLLSRCACGFAVLSVFSVSLQIIVTGFPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWS-FYRALIAEFIATLLF 101 (210)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~kdy~~pppap~~~~~el~~~s-l~Ra~lAEFigTfLf 101 (210)
|.+.+-.--+.++..+...+.+..++.|-=++++.. ..+-..+..||.-. .+++.-|. ++--++.-+++..+-
T Consensus 22 ~~l~~~~a~i~v~~~~~i~~fl~~~a~~~f~~~g~~--~~f~~~~~W~p~~~----~~~~G~l~~i~GTli~s~iA~liA 95 (310)
T COG0573 22 KALLFAAAVIVVLALLLILVFLLIEAIPAFQKFGLS--LFFLFGTEWNPTNA----QPQYGALPPIAGTLITSLIALLIA 95 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--eeeeecCccCCCCC----CcccccHHHHHHHHHHHHHHHHHH
Confidence 344444344566667777888888888855543321 12222445555432 12222232 233334444444444
Q ss_pred HHHHhhhhh
Q 028312 102 LYVTVLTVI 110 (210)
Q Consensus 102 vfi~~gtvi 110 (210)
+-+++++++
T Consensus 96 vP~gi~~Ai 104 (310)
T COG0573 96 VPVGIGTAI 104 (310)
T ss_pred HHHHHHhHH
Confidence 444544443
No 50
>KOG4752 consensus Ribosomal protein L41 [Translation, ribosomal structure and biogenesis]
Probab=22.98 E-value=58 Score=19.24 Aligned_cols=11 Identities=73% Similarity=0.930 Sum_probs=4.5
Q ss_pred hhHHhHHHHHH
Q 028312 13 KKRKRKRKRKR 23 (210)
Q Consensus 13 ~~~~~~~~~~~ 23 (210)
|||-|+-||||
T Consensus 7 kkrmrrlkrkr 17 (26)
T KOG4752|consen 7 KKRMRRLKRKR 17 (26)
T ss_pred HHHHHHHHHHH
Confidence 44444334443
No 51
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=21.96 E-value=60 Score=23.11 Aligned_cols=10 Identities=60% Similarity=1.026 Sum_probs=6.6
Q ss_pred ccCCCchhHH
Q 028312 7 HTKNKPKKRK 16 (210)
Q Consensus 7 ~~~~~~~~~~ 16 (210)
.+|.||+|||
T Consensus 17 ~sr~k~~KRK 26 (59)
T PF12065_consen 17 RSRSKPKKRK 26 (59)
T ss_pred cccCCccchh
Confidence 4566777776
No 52
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=21.92 E-value=95 Score=24.66 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=17.3
Q ss_pred hHHhHHHHHHhhhhhhhhhhhhhhhh
Q 028312 14 KRKRKRKRKRLLSRCACGFAVLSVFS 39 (210)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (210)
-..+||||+|=...-.-||..+-++.
T Consensus 14 ~~~~~~~~~~~~k~yviGFiLSiiLT 39 (110)
T TIGR02908 14 LEFQKAKNAEEMKKQIVTFALMIFLT 39 (110)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 45566666777777888887555444
No 53
>PF03530 SK_channel: Calcium-activated SK potassium channel; InterPro: IPR011996 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. SK channels are thought to play an important role in the functioning of all excitable tissues. To date, 3 subtypes (designated SK1-SK3) have been cloned, each of which possesses a different tissue expression profile: SK1 channels are expressed in the heart; SK2 channels are found in the adrenal gland; and SK3 channels are known to be present in skeletal muscle []. SK channels have a single-channel conductance of 2-20 pS and are activated by rises in cytosolic calcium with half maximal activation in the 400-800 nM range [, ]. Unlike BK channels, they are voltage insensitive and unaffected by low concentrations of TEA, charybdotoxin, or iberiotoxin. However, they are potently blocked by the bee venom apamin [, ], tubocurarine, and quaternary salts of bicuculline [, ]. A new series of compounds that block SK channels include dequalinium Synonym(s): SK Channel This entry represents a conserved region, found in proteins of SK channels family.
Probab=21.74 E-value=1.1e+02 Score=24.53 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=18.1
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhHhh
Q 028312 19 RKRKRLLSRCACGFAVLSVFSVSLQI 44 (210)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (210)
.|||| ++.++|.||+.......+|.
T Consensus 10 e~R~r-lsD~aL~~a~~GIvlMvie~ 34 (119)
T PF03530_consen 10 EKRKR-LSDYALFFAMFGIVLMVIET 34 (119)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34444 88999999998887765543
No 54
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=20.99 E-value=3.6e+02 Score=25.11 Aligned_cols=93 Identities=25% Similarity=0.249 Sum_probs=55.9
Q ss_pred CCCCCCcchhhccchHHHHHHHHHHHHHHHHHHH--HhhhhhcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH--
Q 028312 71 PPPEPLFDAVELTKWSFYRALIAEFIATLLFLYV--TVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVY-- 146 (210)
Q Consensus 71 pppap~~~~~el~~~sl~Ra~lAEFigTfLfvfi--~~gtvi~~~~~~~~~~~~~~~~~~g~l~iAlafGl~I~vlIy-- 146 (210)
+|..++-|.+.+.+.-=|-..+=++++++=.+|. ++|.+++...+.-- +.+..-.-.++.+.|+++|..|.
T Consensus 145 ~~~~~~~e~~Rll~~vG~a~iLPQlLAaLG~vF~~AGVG~vIa~lv~~vi-----P~g~~~~~ViaYclGMalFTmIMGN 219 (308)
T PF06166_consen 145 KPKQPLKESRRLLDQVGWAAILPQLLAALGAVFTAAGVGDVIASLVSSVI-----PEGNRFIGVIAYCLGMALFTMIMGN 219 (308)
T ss_pred ChhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHhhc-----CCCCeehhHHHHHHHHHHHHHHHcc
Confidence 3555555666665555677888899999887774 55556554332210 01111223467777887776663
Q ss_pred -------HhcCC------CCcccChHHHHHHHHhc
Q 028312 147 -------CTAGI------SGGHINPAVTFGLFLAR 168 (210)
Q Consensus 147 -------~~g~I------SGgHlNPAVTfal~l~g 168 (210)
++++| ..-|-||||--++..+-
T Consensus 220 AFAAF~ViTaGIGiPfvi~~~GgnPaivgAlgM~a 254 (308)
T PF06166_consen 220 AFAAFPVITAGIGIPFVIAQFGGNPAIVGALGMTA 254 (308)
T ss_pred HHHHhHHHHhccCceEEEecCCCCHHHHHHHHHhh
Confidence 34443 33378999988877653
No 55
>PF15333 TAF1D: TATA box-binding protein-associated factor 1D
Probab=20.58 E-value=41 Score=29.61 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=8.9
Q ss_pred HHHHHHHH--HHHHHHHHHHH
Q 028312 86 SFYRALIA--EFIATLLFLYV 104 (210)
Q Consensus 86 sl~Ra~lA--EFigTfLfvfi 104 (210)
-.|+.++. +.++--+|-|+
T Consensus 116 lpwk~iL~yEQavarGFFnyi 136 (217)
T PF15333_consen 116 LPWKKILTYEQAVARGFFNYI 136 (217)
T ss_pred ccHHHHhhHHHHHHHHHHHHH
Confidence 34555442 34445555554
Done!