Your job contains 1 sequence.
>028313
MRGRSYSYSPSPPRDYGRRYRSPSPRGHYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQ
FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKK
PSEMRARERFRSRSYDGRRSPPRYSRSPHYARGYSRSPDYYSPPPRRGRDSRSISPRYRR
YRERSYSRSPYGSRSYSPSRSRSRSLDYSR
The BLAST search returned 10 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028313
(210 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2086804 - symbol:SCL30A "SC35-like splicing fa... 447 3.2e-42 1
TAIR|locus:2099931 - symbol:SCL30 "SC35-like splicing fac... 294 1.6e-28 2
TAIR|locus:2144945 - symbol:SCL28 "SC35-like splicing fac... 288 2.2e-25 1
UNIPROTKB|G3MWK4 - symbol:SRSF12 "Uncharacterized protein... 240 2.7e-20 1
UNIPROTKB|Q3ZBU5 - symbol:FUSIP1 "Uncharacterized protein... 239 3.5e-20 1
UNIPROTKB|O75494 - symbol:SRSF10 "Serine/arginine-rich sp... 239 3.5e-20 1
UNIPROTKB|Q5JRI1 - symbol:SRSF10 "Serine/arginine-rich-sp... 239 3.5e-20 1
UNIPROTKB|Q5JRI3 - symbol:SRSF10 "Serine/arginine-rich-sp... 239 3.5e-20 1
UNIPROTKB|Q8WXF0 - symbol:SRSF12 "Serine/arginine-rich sp... 239 3.5e-20 1
MGI|MGI:1333805 - symbol:Srsf10 "serine/arginine-rich spl... 239 3.5e-20 1
RGD|1311067 - symbol:Srsf10 "serine/arginine-rich splicin... 239 3.5e-20 1
UNIPROTKB|F2Z3T5 - symbol:Fusip1 "Protein Fusip1" species... 239 3.5e-20 1
UNIPROTKB|F1P4F6 - symbol:Gga.8379 "Uncharacterized prote... 235 9.2e-20 1
UNIPROTKB|Q7ZTJ8 - symbol:srsf10 "MGC53149 protein" speci... 233 1.5e-19 1
ZFIN|ZDB-GENE-040426-1415 - symbol:zgc:65772 "zgc:65772" ... 233 1.5e-19 1
UNIPROTKB|F1Q237 - symbol:F1Q237 "Uncharacterized protein... 223 1.7e-18 1
GENEDB_PFALCIPARUM|PFE0160c - symbol:PFE0160c "Ser/Arg-ri... 222 2.2e-18 1
UNIPROTKB|Q8I468 - symbol:PFE0160c "Ser/Arg-rich splicing... 222 2.2e-18 1
UNIPROTKB|J9NZF4 - symbol:SRSF12 "Uncharacterized protein... 217 7.5e-18 1
UNIPROTKB|F1S0E2 - symbol:SRSF12 "Uncharacterized protein... 216 9.5e-18 1
ZFIN|ZDB-GENE-030131-2420 - symbol:srsf2b "serine/arginin... 193 3.7e-17 2
ZFIN|ZDB-GENE-040426-2706 - symbol:srsf2a "serine/arginin... 194 2.0e-15 1
UNIPROTKB|P30352 - symbol:SRSF2 "Serine/arginine-rich spl... 190 5.4e-15 1
UNIPROTKB|Q3MHR5 - symbol:SRSF2 "Serine/arginine-rich spl... 190 5.4e-15 1
UNIPROTKB|E2RDB2 - symbol:SRSF2 "Uncharacterized protein"... 190 5.4e-15 1
UNIPROTKB|B4DN89 - symbol:SRSF2 "Serine/arginine-rich-spl... 190 5.4e-15 1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl... 190 5.4e-15 1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl... 190 5.4e-15 1
UNIPROTKB|Q01130 - symbol:SRSF2 "Serine/arginine-rich spl... 190 5.4e-15 1
UNIPROTKB|Q06A98 - symbol:SRSF2 "Serine/arginine-rich spl... 190 5.4e-15 1
MGI|MGI:98284 - symbol:Srsf2 "serine/arginine-rich splici... 190 5.4e-15 1
RGD|1359422 - symbol:Srsf2 "serine/arginine-rich splicing... 190 5.4e-15 1
UNIPROTKB|Q6PDU1 - symbol:Srsf2 "Serine/arginine-rich spl... 190 5.4e-15 1
WB|WBGene00004701 - symbol:rsp-4 species:6239 "Caenorhabd... 174 2.7e-13 1
UNIPROTKB|Q09511 - symbol:rsp-4 "Probable splicing factor... 174 2.7e-13 1
UNIPROTKB|Q9BRL6 - symbol:SRSF8 "Serine/arginine-rich spl... 174 3.7e-13 1
UNIPROTKB|I3L6H1 - symbol:SRSF10 "Uncharacterized protein... 169 9.1e-13 1
TAIR|locus:2173338 - symbol:SC35 "ortholog of human splic... 161 1.6e-11 1
UNIPROTKB|I3LRW8 - symbol:SRSF2 "Serine/arginine-rich-spl... 148 1.5e-10 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 139 1.4e-09 1
POMBASE|SPBC18H10.03 - symbol:tif35 "translation initiati... 142 1.8e-09 1
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 143 3.3e-09 1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ... 135 3.6e-09 1
ZFIN|ZDB-GENE-031125-3 - symbol:rbm19 "RNA binding motif ... 147 4.3e-09 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 139 6.5e-09 1
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 139 7.0e-09 1
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 139 7.1e-09 1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 132 7.6e-09 1
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 139 8.2e-09 1
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 139 8.2e-09 1
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 139 8.2e-09 1
TAIR|locus:2075860 - symbol:U11/U12-31K "U11/U12-31K" spe... 134 1.1e-08 1
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein... 135 1.2e-08 1
UNIPROTKB|K7GKR9 - symbol:RBMX "Uncharacterized protein" ... 130 1.2e-08 1
UNIPROTKB|H3BT71 - symbol:RBMX "RNA-binding motif protein... 135 1.2e-08 1
POMBASE|SPBP22H7.02c - symbol:SPBP22H7.02c "RNA-binding p... 142 1.3e-08 1
UNIPROTKB|K7GRX3 - symbol:RBMX "Uncharacterized protein" ... 135 1.3e-08 1
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 137 1.4e-08 1
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote... 137 1.4e-08 1
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei... 136 1.7e-08 1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 135 1.8e-08 1
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 135 2.0e-08 1
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 135 2.0e-08 1
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 135 2.0e-08 1
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 135 2.1e-08 1
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 135 2.1e-08 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 135 2.1e-08 1
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 135 2.1e-08 1
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 135 2.1e-08 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 135 2.1e-08 1
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 135 2.2e-08 1
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 135 2.2e-08 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 135 2.2e-08 1
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 135 2.2e-08 1
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 135 2.2e-08 1
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp... 135 2.2e-08 1
MGI|MGI:107427 - symbol:Elavl4 "ELAV (embryonic lethal, a... 135 2.2e-08 1
UNIPROTKB|F1NZD3 - symbol:RBMX "Uncharacterized protein" ... 135 2.2e-08 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 135 2.2e-08 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 135 2.3e-08 1
UNIPROTKB|F1RQ90 - symbol:RBMX "Uncharacterized protein" ... 135 2.3e-08 1
RGD|1565256 - symbol:Rbmx "RNA binding motif protein, X-l... 135 2.3e-08 1
UNIPROTKB|D3JUI8 - symbol:RBMX "RNA-binding motif protein... 135 2.3e-08 1
UNIPROTKB|P38159 - symbol:RBMX "RNA-binding motif protein... 135 2.3e-08 1
UNIPROTKB|A5A6M3 - symbol:RBMX "RNA-binding motif protein... 135 2.3e-08 1
UNIPROTKB|Q4R7F0 - symbol:RBMX "RNA-binding motif protein... 135 2.3e-08 1
MGI|MGI:1343044 - symbol:Rbmx "RNA binding motif protein,... 135 2.3e-08 1
UNIPROTKB|E2R068 - symbol:RBMX "Uncharacterized protein" ... 135 2.3e-08 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 135 2.3e-08 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 135 2.3e-08 1
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 135 2.3e-08 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 135 2.3e-08 1
UNIPROTKB|F1P1R2 - symbol:RBM19 "Uncharacterized protein"... 137 2.9e-08 1
UNIPROTKB|K7GMF5 - symbol:RBMX "Uncharacterized protein" ... 126 3.3e-08 1
UNIPROTKB|O75526 - symbol:RBMXL2 "RNA-binding motif prote... 133 3.8e-08 1
UNIPROTKB|Q29RT0 - symbol:RBMX "RNA-binding motif protein... 133 3.8e-08 1
RGD|628611 - symbol:Elavl2 "ELAV (embryonic lethal, abnor... 132 4.1e-08 1
UNIPROTKB|Q8CH84 - symbol:Elavl2 "ELAV-like protein 2" sp... 132 4.1e-08 1
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 125 4.2e-08 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 126 4.2e-08 1
WARNING: Descriptions of 824 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2086804 [details] [associations]
symbol:SCL30A "SC35-like splicing factor 30A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IGI;RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 EMBL:AP002038 HSSP:Q61474 HOGENOM:HOG000276233
KO:K12900 EMBL:AF370268 EMBL:AY063026 IPI:IPI00526651
RefSeq:NP_187966.1 UniGene:At.23948 ProteinModelPortal:Q9LHP2
SMR:Q9LHP2 STRING:Q9LHP2 PRIDE:Q9LHP2 EnsemblPlants:AT3G13570.1
GeneID:820559 KEGG:ath:AT3G13570 TAIR:At3g13570 InParanoid:Q9LHP2
OMA:KERSYSR PhylomeDB:Q9LHP2 ProtClustDB:CLSN2723371
ArrayExpress:Q9LHP2 Genevestigator:Q9LHP2 Uniprot:Q9LHP2
Length = 262
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 82/100 (82%), Positives = 91/100 (91%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G R DLPTSLLVRNLRHDCR EDLR PF QFG +KDIYLPRDYYTG+PRGFGF+Q++DP
Sbjct: 29 GSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDP 88
Query: 90 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
ADAA+AK+ MDGYLLLGRELTVVFAEENRKKP+EMR R+R
Sbjct: 89 ADAAEAKHQMDGYLLLGRELTVVFAEENRKKPTEMRTRDR 128
>TAIR|locus:2099931 [details] [associations]
symbol:SCL30 "SC35-like splicing factor 30" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0006979 "response to
oxidative stress" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006979 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
HSSP:P33240 HOGENOM:HOG000276233 eggNOG:NOG312850 KO:K12900
EMBL:AY099649 EMBL:AY086131 EMBL:AY128836 IPI:IPI00522161
RefSeq:NP_567021.1 UniGene:At.10035 ProteinModelPortal:Q8L3X8
SMR:Q8L3X8 IntAct:Q8L3X8 STRING:Q8L3X8 PaxDb:Q8L3X8 PRIDE:Q8L3X8
EnsemblPlants:AT3G55460.1 GeneID:824712 KEGG:ath:AT3G55460
TAIR:At3g55460 InParanoid:Q8L3X8 OMA:YYSPPRR
ProtClustDB:CLSN2717392 ArrayExpress:Q8L3X8 Genevestigator:Q8L3X8
Uniprot:Q8L3X8
Length = 262
Score = 294 (108.6 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 54/100 (54%), Positives = 73/100 (73%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
GGR SLLVRN+ DCRPE+LR PF +FG ++D+Y+PRDYY+G+PRGF FV+++D
Sbjct: 39 GGRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDA 98
Query: 90 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
DA +A+ M+ GRE+TVV A E+RK+P EMR + R
Sbjct: 99 YDAGEAQRSMNRRSFAGREITVVVASESRKRPEEMRVKTR 138
Score = 39 (18.8 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 29 YGGRGRDLP 37
YGGRGR P
Sbjct: 16 YGGRGRSPP 24
>TAIR|locus:2144945 [details] [associations]
symbol:SCL28 "SC35-like splicing factor 28" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 KO:K12900 EMBL:DQ446966 IPI:IPI00533357
RefSeq:NP_197382.3 UniGene:At.10034 ProteinModelPortal:Q1PDV2
SMR:Q1PDV2 STRING:Q1PDV2 PRIDE:Q1PDV2 EnsemblPlants:AT5G18810.1
GeneID:831999 KEGG:ath:AT5G18810 TAIR:At5g18810 InParanoid:Q1PDV2
OMA:GFVKYRY PhylomeDB:Q1PDV2 Genevestigator:Q1PDV2 Uniprot:Q1PDV2
Length = 236
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 56/89 (62%), Positives = 67/89 (75%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96
P+ LL+RNL D RP DLR F +FG LKDIYLPR+YYTGEPRGFGFV+Y DAA+A
Sbjct: 46 PSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAM 105
Query: 97 YHMDGYLLLGRELTVVFAEENRKKPSEMR 125
M+ ++ GRE+ +VFAEENRK P EMR
Sbjct: 106 KRMNHKVIGGREIAIVFAEENRKTPQEMR 134
>UNIPROTKB|G3MWK4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:DAAA02026452 Ensembl:ENSBTAT00000064733
Uniprot:G3MWK4
Length = 261
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 43/92 (46%), Positives = 65/92 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ RPEDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA Y
Sbjct: 10 TSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALY 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 NLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>UNIPROTKB|O75494 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IDA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=NAS]
[GO:0006376 "mRNA splice site selection" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016482
"cytoplasmic transport" evidence=IDA] [GO:0051082 "unfolded protein
binding" evidence=NAS] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0050733 "RS domain binding"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0006406 GO:GO:0016482 GO:GO:0048025
GO:GO:0006376 HOVERGEN:HBG107480 EMBL:AL590609 EMBL:AF047448
EMBL:AF067730 EMBL:AF449427 EMBL:AY150180 EMBL:AY150181
EMBL:AF419331 EMBL:AF419332 EMBL:AY048592 EMBL:AK001286
EMBL:AK001656 EMBL:AK296175 EMBL:BC001107 EMBL:BC005039
EMBL:BC010074 IPI:IPI00009071 IPI:IPI00074587 IPI:IPI00386662
IPI:IPI00412643 IPI:IPI00979506 RefSeq:NP_001177934.1
RefSeq:NP_001177935.1 RefSeq:NP_001177938.1 RefSeq:NP_006616.1
RefSeq:NP_473357.1 RefSeq:XP_003846472.1 RefSeq:XP_003846473.1
RefSeq:XP_003960063.1 UniGene:Hs.3530 UniGene:Hs.652334
ProteinModelPortal:O75494 SMR:O75494 IntAct:O75494
MINT:MINT-5002282 STRING:O75494 PhosphoSite:O75494 PaxDb:O75494
PRIDE:O75494 DNASU:10772 Ensembl:ENST00000343255
Ensembl:ENST00000344989 Ensembl:ENST00000374452
Ensembl:ENST00000453840 Ensembl:ENST00000492112 GeneID:100996657
GeneID:10772 KEGG:hsa:100996657 KEGG:hsa:10772 UCSC:uc021oin.1
UCSC:uc021oio.1 UCSC:uc021oir.1 UCSC:uc021ois.1 CTD:10772
GeneCards:GC01M024293 HGNC:HGNC:16713 MIM:605221 neXtProt:NX_O75494
PharmGKB:PA28427 eggNOG:NOG312850 InParanoid:O75494 KO:K12900
OMA:FAYVQYT OrthoDB:EOG4HMJBR NextBio:40903 ArrayExpress:O75494
Bgee:O75494 Genevestigator:O75494 GermOnline:ENSG00000188529
GO:GO:0050733 Uniprot:O75494
Length = 262
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>UNIPROTKB|Q8WXF0 [details] [associations]
symbol:SRSF12 "Serine/arginine-rich splicing factor 12"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=NAS] [GO:0051082 "unfolded protein binding" evidence=NAS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0050733
"RS domain binding" evidence=NAS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IDA] [GO:0016482 "cytoplasmic transport"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005654 GO:GO:0000166
EMBL:CH471051 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0016482 GO:GO:0048025 GO:GO:0000381
HOVERGEN:HBG107480 EMBL:AL353135 GO:GO:0000395 GO:GO:0050733
EMBL:AF449428 EMBL:AK314008 EMBL:BC021715 IPI:IPI00942141
RefSeq:NP_542781.3 UniGene:Hs.254414 ProteinModelPortal:Q8WXF0
SMR:Q8WXF0 IntAct:Q8WXF0 STRING:Q8WXF0 PhosphoSite:Q8WXF0
DMDM:47606193 PRIDE:Q8WXF0 DNASU:135295 Ensembl:ENST00000452027
GeneID:135295 KEGG:hsa:135295 UCSC:uc021zcq.1 CTD:135295
GeneCards:GC06M089805 HGNC:HGNC:21220 HPA:HPA049782
neXtProt:NX_Q8WXF0 PharmGKB:PA165618223 InParanoid:Q8WXF0
OMA:XSRHRRF GenomeRNAi:135295 NextBio:83483 ArrayExpress:Q8WXF0
Bgee:Q8WXF0 Genevestigator:Q8WXF0 GermOnline:ENSG00000154548
Uniprot:Q8WXF0
Length = 261
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 42/92 (45%), Positives = 65/92 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL +RN+ RPEDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA Y
Sbjct: 10 TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALY 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 70 NLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>MGI|MGI:1333805 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO;IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISO;IC] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=ISO;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;IDA] [GO:0051082 "unfolded
protein binding" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1333805 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 GO:GO:0016482 GO:GO:0048025 GO:GO:0006376
HOVERGEN:HBG107480 EMBL:AL672076 GeneTree:ENSGT00700000104403
CTD:10772 eggNOG:NOG312850 KO:K12900 OMA:FAYVQYT OrthoDB:EOG4HMJBR
EMBL:AF042383 EMBL:AB015894 EMBL:AB015895 EMBL:AF060490
EMBL:AK014345 EMBL:AK168524 EMBL:AK168558 EMBL:BC037591
EMBL:BC043060 EMBL:BC083082 IPI:IPI00117232 IPI:IPI00473196
IPI:IPI00990689 RefSeq:NP_001073856.1 RefSeq:NP_034308.1
UniGene:Mm.10229 UniGene:Mm.472035 ProteinModelPortal:Q9R0U0
SMR:Q9R0U0 STRING:Q9R0U0 PhosphoSite:Q9R0U0 PaxDb:Q9R0U0
PRIDE:Q9R0U0 Ensembl:ENSMUST00000097844 Ensembl:ENSMUST00000105853
Ensembl:ENSMUST00000126641 GeneID:14105 KEGG:mmu:14105
UCSC:uc008vhb.1 UCSC:uc008vhd.1 InParanoid:B1AV44 ChiTaRS:SRSF10
NextBio:285142 Bgee:Q9R0U0 CleanEx:MM_FUSIP1 Genevestigator:Q9R0U0
GermOnline:ENSMUSG00000028676 Uniprot:Q9R0U0
Length = 262
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>UNIPROTKB|F2Z3T5 [details] [associations]
symbol:Fusip1 "Protein Fusip1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00195918
ProteinModelPortal:F2Z3T5 SMR:F2Z3T5 PRIDE:F2Z3T5
Ensembl:ENSRNOT00000011154 Uniprot:F2Z3T5
Length = 262
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>UNIPROTKB|F1P4F6 [details] [associations]
symbol:Gga.8379 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 GO:GO:0000375
GeneTree:ENSGT00700000104403 OMA:FAYVQYT EMBL:AADN02043720
IPI:IPI00584494 Ensembl:ENSGALT00000006576 Uniprot:F1P4F6
Length = 262
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 42/91 (46%), Positives = 64/91 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ D R EDLR FG++G + D+Y+P D+YT PRGF + Q +D DA DA +
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYSQIVDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>UNIPROTKB|Q7ZTJ8 [details] [associations]
symbol:srsf10 "MGC53149 protein" species:8355 "Xenopus
laevis" [GO:0006376 "mRNA splice site selection" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006376 HOVERGEN:HBG107480 HSSP:P11940 CTD:10772 KO:K12900
EMBL:BC046695 RefSeq:NP_001079656.1 UniGene:Xl.6570
ProteinModelPortal:Q7ZTJ8 GeneID:379343 KEGG:xla:379343
Xenbase:XB-GENE-866220 Uniprot:Q7ZTJ8
Length = 258
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 42/91 (46%), Positives = 63/91 (69%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+SL VRN+ D R EDLR FG++G + D+Y+P DYY PRGF +VQ+ D DA DA +
Sbjct: 10 SSLFVRNIADDIRSEDLRREFGRYGPIVDVYVPLDYYNRRPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P +M+A+E
Sbjct: 70 NLDKKWICGRQIEIQFAQGDRKTPHQMKAKE 100
>ZFIN|ZDB-GENE-040426-1415 [details] [associations]
symbol:zgc:65772 "zgc:65772" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1415 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
KO:K12900 EMBL:FP017231 EMBL:BC056275 EMBL:BC066442 IPI:IPI00934956
RefSeq:NP_956827.1 UniGene:Dr.84143 Ensembl:ENSDART00000101091
GeneID:393505 KEGG:dre:393505 InParanoid:Q7SZS0 NextBio:20814531
Uniprot:Q7SZS0
Length = 248
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 40/92 (43%), Positives = 65/92 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+SL VRN+ + RPEDLR FG++G + D+Y+P D+Y+ PRGF ++Q+ D DA DA +
Sbjct: 10 SSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
++D + GR++ + FA+ +RK P +M+ +ER
Sbjct: 70 NLDRKWVCGRQIEIQFAQGDRKTPGQMKNKER 101
>UNIPROTKB|F1Q237 [details] [associations]
symbol:F1Q237 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03004837
Ensembl:ENSCAFT00000004966 OMA:DNTRSED Uniprot:F1Q237
Length = 261
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 40/91 (43%), Positives = 64/91 (70%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ + R EDL FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA +
Sbjct: 10 TSLFVRNVADNTRSEDLPREFGRYGPIVDVYVPLDFYTRHPRGFAYVQFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ ++K P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDQKTPNQMKAKE 100
>GENEDB_PFALCIPARUM|PFE0160c [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AL844504
HSSP:Q61474 RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468
IntAct:Q8I468 MINT:MINT-1654287 PRIDE:Q8I468
EnsemblProtists:PFE0160c:mRNA GeneID:812926 KEGG:pfa:PFE0160c
EuPathDB:PlasmoDB:PF3D7_0503300 HOGENOM:HOG000284061 OMA:ANTESTQ
ProtClustDB:CLSZ2848078 Uniprot:Q8I468
Length = 308
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 43/96 (44%), Positives = 60/96 (62%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
++ P SLL+R L+ D P +R F +FG +KD+YLP DYYT EPRGFGFV++ D DA
Sbjct: 8 KNQPMSLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKEPRGFGFVEFYDAKDAE 67
Query: 94 DAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
A M+G + G + V A++ R P MR +E+
Sbjct: 68 QALKEMNGSEIDGSRIEVFVAQKGRSDPRHMRYKEK 103
>UNIPROTKB|Q8I468 [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HSSP:Q61474
RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468 IntAct:Q8I468
MINT:MINT-1654287 PRIDE:Q8I468 EnsemblProtists:PFE0160c:mRNA
GeneID:812926 KEGG:pfa:PFE0160c EuPathDB:PlasmoDB:PF3D7_0503300
HOGENOM:HOG000284061 OMA:ANTESTQ ProtClustDB:CLSZ2848078
Uniprot:Q8I468
Length = 308
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 43/96 (44%), Positives = 60/96 (62%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
++ P SLL+R L+ D P +R F +FG +KD+YLP DYYT EPRGFGFV++ D DA
Sbjct: 8 KNQPMSLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKEPRGFGFVEFYDAKDAE 67
Query: 94 DAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
A M+G + G + V A++ R P MR +E+
Sbjct: 68 QALKEMNGSEIDGSRIEVFVAQKGRSDPRHMRYKEK 103
>UNIPROTKB|J9NZF4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03008509
Ensembl:ENSCAFT00000047953 OMA:PRRFAYV Uniprot:J9NZF4
Length = 318
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 43/102 (42%), Positives = 67/102 (65%)
Query: 31 GRGRDL--PTSLL-VRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 87
G RD+ P LL + + RPEDLR FG++G + D+Y+P D+YT PRGF +VQ+
Sbjct: 57 GASRDVSVPPGLLNLLPAQPFFRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFE 116
Query: 88 DPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
D DA DA Y+++ + GR++ + FA+ +RK P +M+++ER
Sbjct: 117 DVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 158
>UNIPROTKB|F1S0E2 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:CU469321 Ensembl:ENSSSCT00000004768 Uniprot:F1S0E2
Length = 240
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 37/80 (46%), Positives = 58/80 (72%)
Query: 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109
RPEDLR FG++G + D+Y+P D+YT PRGF +VQ+ D DA DA Y+++ + GR++
Sbjct: 1 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQI 60
Query: 110 TVVFAEENRKKPSEMRARER 129
+ FA+ +RK P +M+++ER
Sbjct: 61 EIQFAQGDRKTPGQMKSKER 80
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 193 (73.0 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 43/85 (50%), Positives = 52/85 (61%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PE LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFAEENRKKPS 122
MDG +L GREL V A R S
Sbjct: 74 AMDGAILDGRELRVQMARYGRPPDS 98
Score = 31 (16.0 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 119 KKPSEMRARER 129
K PS R+R R
Sbjct: 173 KSPSRSRSRSR 183
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 43/81 (53%), Positives = 51/81 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + PE LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFAEENR 118
MDG LL GREL V A R
Sbjct: 74 AMDGALLDGRELRVQMARYGR 94
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 43/90 (47%), Positives = 53/90 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
MDG +L GREL V A R S R
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR 103
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 43/90 (47%), Positives = 53/90 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
MDG +L GREL V A R S R
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR 103
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 43/90 (47%), Positives = 53/90 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
MDG +L GREL V A R S R
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR 103
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 43/90 (47%), Positives = 53/90 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
MDG +L GREL V A R S R
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR 103
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 43/90 (47%), Positives = 53/90 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
MDG +L GREL V A R S R
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR 103
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 43/90 (47%), Positives = 53/90 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
MDG +L GREL V A R S R
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR 103
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 43/90 (47%), Positives = 53/90 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
MDG +L GREL V A R S R
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR 103
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 43/90 (47%), Positives = 53/90 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
MDG +L GREL V A R S R
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR 103
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 43/90 (47%), Positives = 53/90 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
MDG +L GREL V A R S R
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR 103
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 43/90 (47%), Positives = 53/90 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
MDG +L GREL V A R S R
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR 103
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 43/90 (47%), Positives = 53/90 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V NL + P+ LR F ++GR+ D+Y+PRD YT E RGF FV++ D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
MDG +L GREL V A R S R
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRR 103
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL + NL + P DLR F ++G + D+++PRD Y+ + +GFGFV++ + DA A
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
DG L+ GREL V A+ +R PS+ R
Sbjct: 79 RTDGKLVDGRELRVTLAKYDR--PSDER 104
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL + NL + P DLR F ++G + D+++PRD Y+ + +GFGFV++ + DA A
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
DG L+ GREL V A+ +R PS+ R
Sbjct: 79 RTDGKLVDGRELRVTLAKYDR--PSDER 104
>UNIPROTKB|Q9BRL6 [details] [associations]
symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
Length = 282
Score = 174 (66.3 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 41/96 (42%), Positives = 56/96 (58%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L V NL + P+ LR F ++GR+ D+Y+PR+ +T PRGF FV++ D DA DA+
Sbjct: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
Query: 99 MDGYLLLGRELTVVFAEENRK-----KPSEMRARER 129
MDG L GREL V A R+ + E R R R
Sbjct: 75 MDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSR 110
>UNIPROTKB|I3L6H1 [details] [associations]
symbol:SRSF10 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 GO:GO:0000375
GeneTree:ENSGT00700000104403 Ensembl:ENSSSCT00000026259 OMA:PRYAYLI
Uniprot:I3L6H1
Length = 183
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 34/91 (37%), Positives = 58/91 (63%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL VRN+ R EDLR FG++G + D+Y+ ++T F + ++ D DA DA +
Sbjct: 10 TSLFVRNVAGCFRSEDLRREFGRYGPIVDVYVLLKFWTRWKFLFSYAKFEDVRDAEDALH 69
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
++D + GR++ + FA+ +RK P++M+A+E
Sbjct: 70 NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 161 (61.7 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 41/106 (38%), Positives = 62/106 (58%)
Query: 28 HYGGRGR-DLPT--SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV 84
H+G G D+ SLLV N+ +DL F ++G++ D+++PRD TG+ RGF FV
Sbjct: 3 HFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFV 62
Query: 85 QYIDPADAADAKYHMDGYLLLGRELTVVFAE--ENRKKPSEMRARE 128
+Y +A A +DG ++ GRE+TV FA+ N +K S+ R E
Sbjct: 63 RYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVE 108
>UNIPROTKB|I3LRW8 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:FP565487
Ensembl:ENSSSCT00000025710 OMA:SAPPRRY Uniprot:I3LRW8
Length = 188
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 33/70 (47%), Positives = 40/70 (57%)
Query: 58 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 117
F ++GR+ D+Y+PRD Y E RGF FV+ D DA DA MDG +L GREL V A
Sbjct: 1 FEKYGRVGDVYIPRDRYNKESRGFAFVRXHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 60
Query: 118 RKKPSEMRAR 127
R S R
Sbjct: 61 RPPDSHHSRR 70
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 32 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYA 115
>POMBASE|SPBC18H10.03 [details] [associations]
symbol:tif35 "translation initiation factor eIF3g"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006413 "translational initiation"
evidence=ISS] [GO:0016282 "eukaryotic 43S preinitiation complex"
evidence=IDA] [GO:0071540 "eukaryotic translation initiation factor
3 complex, eIF3e" evidence=IDA] [GO:0071541 "eukaryotic translation
initiation factor 3 complex, eIF3m" evidence=IDA] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC18H10.03 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
GO:GO:0003723 GO:GO:0003743 eggNOG:COG0724 GO:GO:0002183 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
GO:GO:0016282 GO:GO:0071540 GO:GO:0071541 HOGENOM:HOG000239560
OMA:NSEFDAP OrthoDB:EOG4QJVX7 EMBL:AB011823 EMBL:D89144 PIR:T39767
RefSeq:NP_595727.1 ProteinModelPortal:P78795 STRING:P78795
EnsemblFungi:SPBC18H10.03.1 GeneID:2540819 KEGG:spo:SPBC18H10.03
NextBio:20801936 Uniprot:P78795
Length = 282
Score = 142 (55.0 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 31/71 (43%), Positives = 41/71 (57%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
R RD +L V NL D R E+LR F +FG ++ +YL +D TG +GF FV Y D
Sbjct: 196 RERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDC 255
Query: 92 AADAKYHMDGY 102
A A+ +DGY
Sbjct: 256 AIKARDRLDGY 266
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 143 (55.4 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 32/85 (37%), Positives = 45/85 (52%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
GG D T+L+V L + E+ R FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 80 GGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 139
Query: 90 ADAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 140 KDAEKAINTLNGLRLQTKTIKVSYA 164
Score = 100 (40.3 bits), Expect = 0.00015, P = 0.00015
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 387 NGYRLGDRVLQVSFKTNKTHK 407
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 147 (56.8 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L +RN+ + C EDL+ F + G L ++ P D T +P+GF FV Y+ P +A A +
Sbjct: 401 LFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQL 460
Query: 100 DGYLLLGRELTVVFAEENRKKPSE 123
DG+ GR L V+ + ++K +
Sbjct: 461 DGHTFQGRVLHVMASRLKKEKADQ 484
Score = 108 (43.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+ +LVRN+ ++LR F FG LK + LP+ G RGFGF+ ++ DA A
Sbjct: 805 SKILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFS 864
Query: 98 HM-DGYLLLGRELTVVFAE 115
+ L GR L + +A+
Sbjct: 865 ALCHSTHLYGRRLVLEWAD 883
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 139 (54.0 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 32 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYA 115
Score = 101 (40.6 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 325 NGYRLGDRVLQVSFKTNKTHK 345
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 139 (54.0 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 32 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYA 115
Score = 101 (40.6 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 139 (54.0 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 32 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYA 115
Score = 101 (40.6 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 31/81 (38%), Positives = 43/81 (53%)
Query: 37 PTS-LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
P+S L + L + L+ F FG + ++ + D +G RGFGFV + + DA A
Sbjct: 39 PSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSA 98
Query: 96 KYHMDGYLLLGRELTVVFAEE 116
K MDG LLGR L + FA E
Sbjct: 99 KDAMDGKGLLGRPLRISFALE 119
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 139 (54.0 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 60 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 119
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 120 DAEKAINTLNGLRLQTKTIKVSYA 143
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 366 NGYRLGDRVLQVSFKTNKTHK 386
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 139 (54.0 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 61 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 120
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 121 DAEKAINTLNGLRLQTKTIKVSYA 144
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 139 (54.0 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 61 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 120
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 121 DAEKAINTLNGLRLQTKTIKVSYA 144
Score = 98 (39.6 bits), Expect = 0.00023, P = 0.00023
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 100 DGYLLLGRELTVVFAEENRK 119
+GY L R L V + K
Sbjct: 368 NGYRLGDRVLQVFKTNKTHK 387
>TAIR|locus:2075860 [details] [associations]
symbol:U11/U12-31K "U11/U12-31K" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0051302
"regulation of cell division" evidence=IMP] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
Length = 261
Score = 134 (52.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 30 GGRGRDLPT--SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 87
GG G P+ +L V NL D+ F FG++ + + +D +T + RG FV Y+
Sbjct: 47 GGSGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYV 106
Query: 88 DPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
DAA A MD +L GR+LTV A +N + ++ R
Sbjct: 107 SREDAAKAARSMDAKILNGRKLTVSIAADNGRASEFIKKR 146
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 135 (52.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 7 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 66
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 67 AARDMNGKSLDGKAIKV----EQATKPS 90
>UNIPROTKB|K7GKR9 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000035101 Uniprot:K7GKR9
Length = 196
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A M+G LL E V+ A
Sbjct: 65 AARDMNGKLLYHVEEIVMEA 84
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 135 (52.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>POMBASE|SPBP22H7.02c [details] [associations]
symbol:SPBP22H7.02c "RNA-binding protein Mrd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0030686 "90S preribosome"
evidence=ISO] [GO:0034462 "small-subunit processome assembly"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
Length = 833
Score = 142 (55.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L +RNL + C +DL+ FG FG+L+ +++P D T P+GF ++ + D DA A +
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 100 DGYLLLGRELTVVFAE 115
D GR L V+ A+
Sbjct: 385 DAKPFQGRLLHVLPAK 400
Score = 113 (44.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 22/77 (28%), Positives = 44/77 (57%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T +L++NL + +D++ G +G+L+ + +P+ + RGF F +++ +AA+A
Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKF-DRSARGFAFAEFVTAREAANAMR 779
Query: 98 HMDGYLLLGRELTVVFA 114
+ LLGR L + +A
Sbjct: 780 ALKNTHLLGRHLVLQYA 796
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 135 (52.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 30/84 (35%), Positives = 44/84 (52%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L E+L+ FG G ++ L RD TG+ G+GFV Y+DP
Sbjct: 60 GNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPK 119
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 120 DAEKAINTLNGLRLQTKTIKVSYA 143
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
A M+G L G+ + V E KPS R R
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPSFERGR 93
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 136 (52.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 33/88 (37%), Positives = 46/88 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ +I L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 135 (52.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G D T+L+V L + E+ R FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 36 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 95
Query: 90 ADAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 96 KDAEKAINTLNGLRLQTKTIKVSYA 120
Score = 100 (40.3 bits), Expect = 0.00012, P = 0.00012
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 330 NGYRLGDRVLQVSFKTNKAHK 350
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 135 (52.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G D T+L+V L + E+ R FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 38 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 90 ADAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 135 (52.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G D T+L+V L + E+ R FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 38 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 90 ADAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 135 (52.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARE 128
G L GR++ +A RK P+ +E
Sbjct: 176 GGQWLGGRQIRTNWA--TRKPPAPKSTQE 202
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 135 (52.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G D T+L+V L + E+ R FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 43 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 90 ADAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 103 KDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 350 NGYRLGDRVLQVSFKTNKTHK 370
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 135 (52.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G D T+L+V L + E+ R FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 43 GATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 90 ADAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 103 KDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 350 NGYRLGDRVLQVSFKTNKAHK 370
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 135 (52.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARE 128
G L GR++ +A RK P+ +E
Sbjct: 176 GGQWLGGRQIRTNWA--TRKPPAPKSTQE 202
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 135 (52.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G D T+L+V L + E+ R FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 31 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 90 ADAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 135 (52.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G D T+L+V L + E+ R FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 31 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 90 ADAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 135 (52.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARE 128
G L GR++ +A RK P+ +E
Sbjct: 159 GGQWLGGRQIRTNWA--TRKPPAPKSTQE 185
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G D T+L+V L + E+ R FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 38 GATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 90 ADAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 100 (40.3 bits), Expect = 0.00014, P = 0.00014
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G D T+L+V L + E+ R FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 38 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 90 ADAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKVSYA 122
Score = 100 (40.3 bits), Expect = 0.00014, P = 0.00014
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARE 128
G L GR++ +A RK P+ +E
Sbjct: 159 GGQWLGGRQIRTNWA--TRKPPAPKSTQE 185
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G D T+L+V L + E+ R FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 54 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 113
Query: 90 ADAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 114 KDAEKAINTLNGLRLQTKTIKVSYA 138
Score = 100 (40.3 bits), Expect = 0.00014, P = 0.00014
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 361 NGYRLGDRVLQVSFKTNKAHK 381
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G D T+L+V L + E+ R FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 42 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 101
Query: 90 ADAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 102 KDAEKAINTLNGLRLQTKTIKVSYA 126
Score = 100 (40.3 bits), Expect = 0.00014, P = 0.00014
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 363 NGYRLGDRVLQVSFKTNKAHK 383
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G D T+L+V L + E+ R FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 43 GATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 90 ADAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 103 KDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 100 (40.3 bits), Expect = 0.00014, P = 0.00014
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G D T+L+V L + E+ R FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 43 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 90 ADAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 103 KDAEKAINTLNGLRLQTKTIKVSYA 127
Score = 100 (40.3 bits), Expect = 0.00014, P = 0.00014
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARE 128
G L GR++ +A RK P+ +E
Sbjct: 175 GGQWLGGRQIRTNWA--TRKPPAPKSTQE 201
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARE 128
G L GR++ +A RK P+ +E
Sbjct: 176 GGQWLGGRQIRTNWA--TRKPPAPKSTQE 202
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 65 AARDMNGKSLDGKAIKV----EQATKPS 88
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 6 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 65
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KPS
Sbjct: 66 AARDMNGKSLDGKAIKV----EQATKPS 89
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARE 128
G L GR++ +A RK P+ +E
Sbjct: 176 GGQWLGGRQIRTNWA--TRKPPAPKSTQE 202
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARE 128
G L GR++ +A RK P+ +E
Sbjct: 176 GGQWLGGRQIRTNWA--TRKPPAPKSTQE 202
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARE 128
G L GR++ +A RK P+ +E
Sbjct: 176 GGQWLGGRQIRTNWA--TRKPPAPKSTQE 202
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARE 128
G L GR++ +A RK P+ +E
Sbjct: 176 GGQWLGGRQIRTNWA--TRKPPAPKSTQE 202
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 137 (53.3 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 34/96 (35%), Positives = 50/96 (52%)
Query: 35 DLPTS--LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 92
DL S L VRNL EDL F ++G L +I+ P D T +P+GF F+ Y+ P A
Sbjct: 73 DLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHA 132
Query: 93 ADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
A MDG + GR + ++ + + K ++ A E
Sbjct: 133 VKAYAEMDGQVFQGRMMHLLPSTIKKLKIEDIDAEE 168
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 31/96 (32%), Positives = 46/96 (47%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAADAK 96
+ +LVRN+ ++R F FG LK + LP+ TG RGFGFV ++ DA A
Sbjct: 495 SKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKAF 554
Query: 97 YHM-DGYLLLGRELTVVFAE-ENRKKPSEMRARERF 130
+ L GR L + +A+ E + R + F
Sbjct: 555 NALCHSTHLYGRRLVLEWADTEETVEALRRRTADHF 590
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 7 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 66
Query: 95 AKYHMDGYLLL 105
A M+G +++
Sbjct: 67 AARDMNGKMMV 77
>UNIPROTKB|O75526 [details] [associations]
symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
Length = 392
Score = 133 (51.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA
Sbjct: 5 DRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFA-----EENRKKPSEMRARER 129
A M+G L G+ + V A E +R+ P R+R R
Sbjct: 65 AARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGR 104
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 133 (51.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 33/100 (33%), Positives = 50/100 (50%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF F+ + PADA
Sbjct: 5 DRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKA 64
Query: 95 AKYHMDGYLLLGRELTVVFA-----EENRKKPSEMRARER 129
A M+G L G+ + V A E R+ P R+R R
Sbjct: 65 AVRDMNGKSLDGKAIKVAQATKPAFESGRRGPPLSRSRGR 104
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 132 (51.5 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 30/84 (35%), Positives = 44/84 (52%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+ L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 32 GNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYA 115
Score = 101 (40.6 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 132 (51.5 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 30/84 (35%), Positives = 44/84 (52%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+ L + E+L+ FG G ++ L RD TG+ G+GFV YIDP
Sbjct: 32 GNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYA 115
Score = 101 (40.6 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 100 DGYLLLGREL 109
G L GR++
Sbjct: 120 GGQWLGGRQI 129
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 126 (49.4 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 100 DGYLLLGRELTVVFAEENRKKPS 122
G L GR++ +A RK P+
Sbjct: 168 GGQWLGGRQIRTNWA--TRKPPA 188
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 132 (51.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 32/88 (36%), Positives = 45/88 (51%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ +I L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
M+G L G+ + V E KPS
Sbjct: 65 VARDMNGKSLDGKAIKV----EQATKPS 88
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 132 (51.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 32/88 (36%), Positives = 45/88 (51%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ +I L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
M+G L G+ + V E KPS
Sbjct: 65 VARDMNGKSLDGKAIKV----EQATKPS 88
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 137 (53.3 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ VRNL + + EDL F +FG++ +I++P DY + + +G F+ Y+ P +A A M
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 100 DGYLLLGRELTVV 112
DG + GR + V+
Sbjct: 423 DGKVFQGRLIHVL 435
Score = 113 (44.8 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 25/98 (25%), Positives = 53/98 (54%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
GG+ + ++++NL + +++R F +G ++ + +P+ G RGFGFV+++
Sbjct: 787 GGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGH-RGFGFVEFLTE 845
Query: 90 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
+A +A + GR L + +AE++ K E+R +
Sbjct: 846 EEAKNAMEALGNSHFYGRHLVLQYAEQD-KNIDELREK 882
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 132 (51.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + +D+R F FG++ D + +D TG+ +G+GFV + + DA +A HM
Sbjct: 117 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 100 DGYLLLGRELTVVFAEENRKKPS 122
G L GR++ +A RK P+
Sbjct: 177 GGQWLGGRQIRTNWA--TRKPPA 197
>SGD|S000005054 [details] [associations]
symbol:NOP15 "Constituent of 66S pre-ribosomal particles"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0042273 "ribosomal large
subunit biogenesis" evidence=IMP;IPI] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0000915 "cytokinesis, actomyosin contractile
ring assembly" evidence=IMP] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000005054 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
GO:GO:0000915 EMBL:Z69382 GO:GO:0042273 GO:GO:0030687 GO:GO:0006364
eggNOG:NOG244773 GeneTree:ENSGT00390000011515 KO:K14838 EMBL:Z71386
EMBL:AY693098 PIR:S63051 RefSeq:NP_014289.1
ProteinModelPortal:P53927 SMR:P53927 DIP:DIP-4741N IntAct:P53927
MINT:MINT-551800 STRING:P53927 PaxDb:P53927 PeptideAtlas:P53927
EnsemblFungi:YNL110C GeneID:855613 KEGG:sce:YNL110C CYGD:YNL110c
HOGENOM:HOG000000855 OMA:QKHEERI OrthoDB:EOG4BK8DG NextBio:979795
Genevestigator:P53927 GermOnline:YNL110C Uniprot:P53927
Length = 220
Score = 126 (49.4 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V L H ++L F QFG LK++ L R+ TG R +GF+++++ DA A+ M
Sbjct: 93 IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESM 152
Query: 100 DGYLLLGRELTV 111
+ YLL+G L V
Sbjct: 153 NNYLLMGHLLQV 164
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 137 (53.3 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 34/96 (35%), Positives = 50/96 (52%)
Query: 35 DLPTS--LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 92
DL S L VRNL EDL F ++G L +I+ P D T +P+GF F+ Y+ P A
Sbjct: 397 DLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHA 456
Query: 93 ADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 128
A MDG + GR + ++ + + K ++ A E
Sbjct: 457 VKAYAEMDGQVFQGRMMHLLPSTIKKLKIEDIDAEE 492
Score = 110 (43.8 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 31/96 (32%), Positives = 46/96 (47%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAADAK 96
+ +LVRN+ ++R F FG LK + LP+ TG RGFGFV ++ DA A
Sbjct: 819 SKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKAF 878
Query: 97 YHM-DGYLLLGRELTVVFAE-ENRKKPSEMRARERF 130
+ L GR L + +A+ E + R + F
Sbjct: 879 NALCHSTHLYGRRLVLEWADTEETVEALRRRTADHF 914
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 137 (53.3 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 35/91 (38%), Positives = 50/91 (54%)
Query: 35 DLPTS--LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 92
DL S L +RNL + EDL+ F +FG L +++ P D T +P+GF FV +I P A
Sbjct: 400 DLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHA 459
Query: 93 ADAKYHMDGYLLLGRELTVVFAEENRKKPSE 123
A +DG + GR L V+ +K+ SE
Sbjct: 460 VRAYAEVDGQVFQGRMLHVL-PSTIKKEASE 489
Score = 103 (41.3 bits), Expect = 0.00022, P = 0.00022
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAADAK 96
+ +LVRN+ +++ F FG LK + LP+ TG RGFGFV ++ DA A
Sbjct: 832 SKILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
Query: 97 YHM-DGYLLLGRELTVVFAE 115
+ L GR L + +A+
Sbjct: 892 QALCHSTHLYGRRLVLEWAD 911
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDG 101
A M+G
Sbjct: 65 AARDMNG 71
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L FG++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 7 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 66
Query: 95 AKYHMDG 101
A M+G
Sbjct: 67 AARDMNG 73
>TAIR|locus:2050024 [details] [associations]
symbol:AT2G21440 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC006841 GO:GO:0003676 HSSP:Q61474
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT EMBL:AY059760 EMBL:BT003003
IPI:IPI00535350 PIR:C84601 RefSeq:NP_565513.1 UniGene:At.14070
ProteinModelPortal:Q9SJT4 SMR:Q9SJT4 STRING:Q9SJT4 PaxDb:Q9SJT4
PRIDE:Q9SJT4 EnsemblPlants:AT2G21440.1 GeneID:816683
KEGG:ath:AT2G21440 TAIR:At2g21440 HOGENOM:HOG000240498
InParanoid:Q9SJT4 PhylomeDB:Q9SJT4 ProtClustDB:CLSN2688313
ArrayExpress:Q9SJT4 Genevestigator:Q9SJT4 Uniprot:Q9SJT4
Length = 1003
Score = 136 (52.9 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 30 GGRGRDLPT-SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88
GG G L++RNL +P D++ F G + D+++P+++ TG P+GF FV++
Sbjct: 322 GGEGSKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTC 381
Query: 89 PADAADAKYHMDGYLLLGRELTVVFA 114
DAA+A +G++ R + V +A
Sbjct: 382 KKDAANAIKKFNGHMFGKRPIAVDWA 407
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 130 (50.8 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 33/99 (33%), Positives = 48/99 (48%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L F +FGR+ ++ L +D T + RGF FV Y +P DA D
Sbjct: 5 DRPGKLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKD 64
Query: 95 AKYHMDGYLLLGRELTVV------FAEENRKKPSEMRAR 127
A M+G L G+ + V F R+ P R+R
Sbjct: 65 AAREMNGKPLDGKPIKVEQATKPQFETSGRRGPPPPRSR 103
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 127 (49.8 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 31/94 (32%), Positives = 54/94 (57%)
Query: 32 RGRDLPTS-LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
R + L T L +RNL + + +DL+ F ++G + ++ + D TG +GF V+++ P
Sbjct: 272 REKILETGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFP- 330
Query: 91 DAADAKYH-MDGYLLLGRELTVVFAEENRKKPSE 123
+AA A Y +DGY+ GR + ++ +E R K E
Sbjct: 331 EAAVAAYSALDGYVFKGRMMHILPGDEKRTKEGE 364
Score = 100 (40.3 bits), Expect = 0.00041, P = 0.00041
Identities = 34/99 (34%), Positives = 53/99 (53%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDY-YTGEPRGFGFVQYI--DPADAA- 93
T LLVRNL + +++ F FG +K I +P+ + RGFGFV +I D A A
Sbjct: 748 TKLLVRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISADEAHRAF 807
Query: 94 DAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR--ERF 130
D+ H L GR L + +A+++ + E+R + E+F
Sbjct: 808 DSLVHSTH--LYGRRLVLEWAKDD-ETVEELREKTAEKF 843
Score = 98 (39.6 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYT--GEPRGFGFVQYIDPADAA 93
+ T L+V+NL C + LR F ++G++ D L YT G+ RGF FV ++D A+
Sbjct: 1 MTTRLIVKNLPSTCTEQQLRKFFEKYGQISDASLK---YTKEGKFRGFAFVGFLDEGSAS 57
Query: 94 DAKYHMDGYLLLGRELTV 111
+A + ++LTV
Sbjct: 58 NALAKSNQTFFNSKKLTV 75
Score = 32 (16.3 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 116 ENRKKPSEMRARER 129
E +KP E+ A ++
Sbjct: 612 EEEEKPKEVEAEDK 625
>TAIR|locus:2013016 [details] [associations]
symbol:CSTF64 "cleavage stimulating factor 64"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
processing" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048589
"developmental growth" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
Uniprot:Q9M9G6
Length = 461
Score = 131 (51.2 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V N+ +D E LR G+ G + L D TG+P+G+GF +Y D A A+ ++
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 100 DGYLLLGRELTVVFAEENR 118
Y + GR+L V FAE ++
Sbjct: 71 QSYEINGRQLRVDFAENDK 89
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L + L D E L F ++G++ ++ + +D T RGFGFV + +P DA DA M
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 100 DGYLLLGRELTV 111
+G + GR++ V
Sbjct: 67 NGKAVDGRQIRV 78
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 129 (50.5 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + E+ + FG G ++ L RD TG+ G+GFV Y+DP
Sbjct: 31 GATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPN 90
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 91 DADKAINTLNGLKLQTKTIKVSYA 114
Score = 98 (39.6 bits), Expect = 0.00021, P = 0.00021
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL + L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F + K
Sbjct: 338 NGYRLGDRVLQVSFKTSKQHK 358
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 134 (52.2 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 28/87 (32%), Positives = 52/87 (59%)
Query: 35 DLPTSLLVRNLR---HDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
D+P L + L + ++L+ F FG + D+ + RD YTG+ +GFGF+Q+ ++
Sbjct: 583 DIPLKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASE 642
Query: 92 AADAKYHMDGYLLLGRELTVVFAEENR 118
A +A M+G + GRE+ V +A++++
Sbjct: 643 AIEALTVMNGMEVAGREIKVGYAQDSK 669
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 134 (52.2 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 28/87 (32%), Positives = 52/87 (59%)
Query: 35 DLPTSLLVRNLR---HDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
D+P L + L + ++L+ F FG + D+ + RD YTG+ +GFGF+Q+ ++
Sbjct: 583 DIPLKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASE 642
Query: 92 AADAKYHMDGYLLLGRELTVVFAEENR 118
A +A M+G + GRE+ V +A++++
Sbjct: 643 AIEALTVMNGMEVAGREIKVGYAQDSK 669
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 132 (51.5 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 30/90 (33%), Positives = 53/90 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T++ V+NLR D + L+ F QFG+ + + + RD G+ RGFGF+ + +A A
Sbjct: 191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS-NGQSRGFGFINFEKHEEAQKAVD 249
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
HM+G + G+ L V A++ ++ +E++ R
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQNELKRR 279
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 126 (49.4 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M
Sbjct: 93 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 152
Query: 100 DGYLLLGRELTVVFAEENRKKPS 122
G L GR++ +A RK P+
Sbjct: 153 GGQWLGGRQIRTNWA--TRKPPA 173
>TAIR|locus:2023903 [details] [associations]
symbol:ATE1 "ATPase E1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 UniGene:At.66943
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK228412 IPI:IPI00541371
RefSeq:NP_563931.2 ProteinModelPortal:Q0WRA3 SMR:Q0WRA3
STRING:Q0WRA3 PaxDb:Q0WRA3 PRIDE:Q0WRA3 EnsemblPlants:AT1G13690.1
GeneID:837930 KEGG:ath:AT1G13690 TAIR:At1g13690 InParanoid:Q0WRA3
OMA:AQPIWAD PhylomeDB:Q0WRA3 ProtClustDB:CLSN2690943
Genevestigator:Q0WRA3 Uniprot:Q0WRA3
Length = 177
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 31/85 (36%), Positives = 43/85 (50%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L V L + L F FG +KD+ P D + R FGFV +++ DA+ A +
Sbjct: 14 TLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDN 73
Query: 99 MDGYLLLGRELTVVFAEENRKKPSE 123
MDG L GR LTV +A + K E
Sbjct: 74 MDGAELYGRVLTVNYALPEKIKGGE 98
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 126 (49.4 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 100 DGYLLLGRELTVVFAEENRKKPS 122
G L GR++ +A RK P+
Sbjct: 157 GGQWLGGRQIRTNWA--TRKPPA 177
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 133 (51.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
++V+NL + +D+ F FG+LK + +P+ + RGF FV+++ P +A +A +
Sbjct: 765 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKF-DKSARGFAFVEFLLPKEAENAMDQL 823
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRAR 127
G LLGR L + +AEE+ E AR
Sbjct: 824 HGVHLLGRRLVMQYAEEDAVDAEEEIAR 851
Score = 126 (49.4 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L +RN+ + + ED R F FG L+++++ D TG+ +GF +V + D +A +A +
Sbjct: 347 LFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVEL 406
Query: 100 DGYLLLGRELTVVFAEENR 118
D + GR L ++ EE +
Sbjct: 407 DKQIFQGRLLHILPGEEKK 425
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 128 (50.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D T+L+V L + E+L+ FG G ++ L RD TG+ G+GFV Y++P DA
Sbjct: 65 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEK 124
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A ++G L + + V +A
Sbjct: 125 AINTLNGLRLQTKTIKVSYA 144
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
>DICTYBASE|DDB_G0286007 [details] [associations]
symbol:rbm8A "RNA-binding motif protein 8A"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0286007
GenomeReviews:CM000153_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12876 EMBL:AAFI02000084 eggNOG:NOG246776
RefSeq:XP_637941.1 ProteinModelPortal:Q54ME8 SMR:Q54ME8
STRING:Q54ME8 EnsemblProtists:DDB0233616 GeneID:8625394
KEGG:ddi:DDB_G0286007 InParanoid:Q54ME8 OMA:SERYSGK Uniprot:Q54ME8
Length = 187
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ VRN++ + + DL F ++G++K+I+L D TG +G+ ++Y ++A DA +
Sbjct: 73 IFVRNIQEEVQEPDLMDIFAEYGQIKNIHLNIDRRTGFTKGYALIEYEKRSEAEDAIKNG 132
Query: 100 DGYLLLGRELTVVFA 114
GY L G +L+V +A
Sbjct: 133 SGYELAGLKLSVDWA 147
>GENEDB_PFALCIPARUM|PF14_0057 [details] [associations]
symbol:PF14_0057 "RNA binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+++ N+ + R + ++ F +FG++K+++L D TG +G+ F++Y + DA A M
Sbjct: 25 IIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAIDEM 84
Query: 100 DGYLLLGRELTV--VFAEENRK 119
DG +LL +E+ V F +E K
Sbjct: 85 DGTMLLNQEIHVDWAFVQEKSK 106
>UNIPROTKB|Q8IM34 [details] [associations]
symbol:PF14_0057 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+++ N+ + R + ++ F +FG++K+++L D TG +G+ F++Y + DA A M
Sbjct: 25 IIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAIDEM 84
Query: 100 DGYLLLGRELTV--VFAEENRK 119
DG +LL +E+ V F +E K
Sbjct: 85 DGTMLLNQEIHVDWAFVQEKSK 106
>UNIPROTKB|A4RHN3 [details] [associations]
symbol:TIF35 "Eukaryotic translation initiation factor 3
subunit G" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 EMBL:CM001232 eggNOG:COG0724 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
RefSeq:XP_003715298.1 ProteinModelPortal:A4RHN3 STRING:A4RHN3
GeneID:2682994 KEGG:mgr:MGG_07109 OrthoDB:EOG4QJVX7 Uniprot:A4RHN3
Length = 303
Score = 125 (49.1 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 29 YGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88
YG R DL T L V N+ ++LR F +FGR+ ++L +D TG +GF F+ + D
Sbjct: 216 YGERD-DLAT-LRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFAD 273
Query: 89 PADAADAKYHMDGYLLLGRELTVVFAEE 116
DA A MDG+ L V FA++
Sbjct: 274 REDAVKACNKMDGWGFKHLILRVEFAKK 301
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 129 (50.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 34/94 (36%), Positives = 47/94 (50%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V N+ DL+ F FG L+ + L +D TG RG+GFVQ+ DP A +A M
Sbjct: 275 LYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQAREALEKM 333
Query: 100 DGYLLLGRELTV-----VFAEENRKKPSEMRARE 128
+GY L GR + V F EN ++ A +
Sbjct: 334 NGYDLGGRAIRVGLGNDKFTPENTQRTQSQSANQ 367
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 132 (51.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 34/91 (37%), Positives = 49/91 (53%)
Query: 35 DLPTS--LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 92
DL S L VRNL + EDL F ++G L +++ P D T +P+GF FV ++ P A
Sbjct: 398 DLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHA 457
Query: 93 ADAKYHMDGYLLLGRELTVVFAEENRKKPSE 123
A +DG + GR L V+ +K+ SE
Sbjct: 458 VKAYAEVDGQVFQGRMLHVL-PSTIKKEASE 487
Score = 104 (41.7 bits), Expect = 0.00017, P = 0.00017
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAADAK 96
+ +LVRN+ ++R F FG LK + LP+ TG RGFGFV + DA A
Sbjct: 837 SKILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAF 896
Query: 97 YHM-DGYLLLGRELTVVFAE 115
+ L GR L + +A+
Sbjct: 897 NALCHSTHLYGRRLVLEWAD 916
Score = 99 (39.9 bits), Expect = 0.00059, P = 0.00059
Identities = 29/98 (29%), Positives = 47/98 (47%)
Query: 36 LP-TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY-TGE--PRGFGFVQYIDPAD 91
LP +L ++NL E L+G F + G +K + + G GFGFV+Y P
Sbjct: 732 LPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQ 791
Query: 92 AADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
A A + G+++ G +L V +E KP+ R++
Sbjct: 792 AQKALKQLQGHVVDGHKLEVRISER-ATKPAPTATRKK 828
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 131 (51.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L +RN+ ++ ED R F Q+G L+++++ D TG+ +GF +VQ++ DA A +
Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSL 371
Query: 100 DGYLLLGRELTVVFAEENR 118
D + GR L ++ A++ +
Sbjct: 372 DKQIFQGRLLHILPADKKK 390
Score = 123 (48.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+ ++++NL + +DL FG FG+LK + +P+ + RGF FV++ +A A
Sbjct: 717 SKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKF-DQSARGFAFVEFNLMKEAETAMS 775
Query: 98 HMDGYLLLGRELTVVFAEEN 117
++G LLGR L + +AE++
Sbjct: 776 QLEGVHLLGRRLVMQYAEQD 795
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 100 DGYLLLGRELTVVFAEENRKKPS 122
G L GR++ +A RK P+
Sbjct: 157 GGQWLGGRQIRTNWA--TRKPPA 177
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 100 DGYLLLGRELTVVFAEENRKKPS 122
G L GR++ +A RK P+
Sbjct: 157 GGQWLGGRQIRTNWA--TRKPPA 177
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 100 DGYLLLGRELTVVFAEENRKKPS 122
G L GR++ +A RK P+
Sbjct: 164 GGQWLGGRQIRTNWA--TRKPPA 184
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 100 DGYLLLGRELTVVFAEENRKKPS 122
G L GR++ +A RK P+
Sbjct: 168 GGQWLGGRQIRTNWA--TRKPPA 188
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 100 DGYLLLGRELTVVFAEENRKKPS 122
G L GR++ +A RK P+
Sbjct: 168 GGQWLGGRQIRTNWA--TRKPPA 188
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 100 DGYLLLGRELTVVFAEENRKKPS 122
G L GR++ +A RK P+
Sbjct: 168 GGQWLGGRQIRTNWA--TRKPPA 188
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 100 DGYLLLGRELTVVFAEENRKKPS 122
G L GR++ +A RK P+
Sbjct: 168 GGQWLGGRQIRTNWA--TRKPPA 188
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + +D+R F FGR+ D + +D TG+ +G+GFV + + DA +A M
Sbjct: 98 VFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 157
Query: 100 DGYLLLGRELTVVFAEENRKKPS 122
G L GR++ +A RK P+
Sbjct: 158 GGQWLGGRQIRTNWA--TRKPPA 178
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYT-GEPRGFGFVQYIDPADAA 93
D T+L+V L + E+L+ FG G ++ L RD T G+ G+GFV YIDP DA
Sbjct: 63 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAE 122
Query: 94 DAKYHMDGYLLLGRELTVVFA 114
A ++G L + + V +A
Sbjct: 123 KAINTLNGLRLQTKTIKVSYA 143
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F K
Sbjct: 368 NGYRLGDRVLQVSFKTSKTHK 388
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + ED++ F FGR+ D + +D TG+ +G+GFV + + DA +A M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 100 DGYLLLGRELTVVFAEENRKKPS 122
G L GR++ +A RK P+
Sbjct: 168 GGQWLGGRQIRTNWA--TRKPPA 188
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 131 (51.2 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 33/94 (35%), Positives = 48/94 (51%)
Query: 35 DLPTS--LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 92
DL S L VRNL + EDL F +G L +++ P D T +P+GF FV ++ P A
Sbjct: 395 DLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHA 454
Query: 93 ADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRA 126
A +DG + GR L V+ + ++ E A
Sbjct: 455 VKAYAEVDGQVFQGRMLHVLPSTIKKEASQEANA 488
Score = 111 (44.1 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 29/80 (36%), Positives = 41/80 (51%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAADAK 96
+ +LVRN+ ++R F FG LK + LP+ TG RGFGFV +I DA A
Sbjct: 824 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 883
Query: 97 YHM-DGYLLLGRELTVVFAE 115
+ L GR L + +A+
Sbjct: 884 NALCHSTHLYGRRLVLEWAD 903
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 131 (51.2 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 33/91 (36%), Positives = 49/91 (53%)
Query: 35 DLPTS--LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 92
DL S L VRNL + EDL F ++G L +++ P D T +P+GF F+ ++ P A
Sbjct: 397 DLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHA 456
Query: 93 ADAKYHMDGYLLLGRELTVVFAEENRKKPSE 123
A +DG + GR L V+ +K+ SE
Sbjct: 457 VKAYSEVDGQVFQGRMLHVL-PSTIKKEASE 486
Score = 108 (43.1 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAADAK 96
+ +LVRN+ ++R F FG LK + LP+ TG RGFGFV ++ DA A
Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
Query: 97 YHM-DGYLLLGRELTVVFAE 115
+ L GR L + +A+
Sbjct: 892 NALCHSTHLYGRRLVLEWAD 911
Score = 98 (39.6 bits), Expect = 0.00075, P = 0.00075
Identities = 29/98 (29%), Positives = 47/98 (47%)
Query: 36 LP-TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGE---PRGFGFVQYIDPAD 91
LP +L ++NL D E L+ F + G +K + + GFGFV+Y P
Sbjct: 727 LPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQ 786
Query: 92 AADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
A A + G+++ G +L V +E KP+ AR++
Sbjct: 787 AQKALKQLQGHVVDGHKLEVRISER-ATKPAVTLARKK 823
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
LLV L D + L F ++G++ ++ + +D T RGFGFV + + DA DA M
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRAR 127
+G + GR++ V + K SE R+R
Sbjct: 68 NGKSVDGRQIRV----DQAGKSSENRSR 91
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
LLV L D + L F ++G++ ++ + +D T RGFGFV + + DA DA M
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRAR 127
+G + GR++ V + K SE R+R
Sbjct: 68 NGKSVDGRQIRV----DQAGKSSENRSR 91
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
LLV L D + L F ++G++ ++ + +D T RGFGFV + + DA DA M
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRAR 127
+G + GR++ V + K SE R+R
Sbjct: 68 NGKSVDGRQIRV----DQAGKSSENRSR 91
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
+G P L V +L + + LRG F FG++ +I L +D TG +G+GF+ + D
Sbjct: 7 KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSEC 66
Query: 92 AADAKYHMDGYLLLGRELTV 111
A A ++G+ L GR + V
Sbjct: 67 ARRALEQLNGFELAGRPMRV 86
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 124 (48.7 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L + +D+R F FG++ D + +D TG+ +G+GF+ +I+ DA A M
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 100 DGYLLLGRELTVVFAEENRKKPS 122
+G L GR++ +A +KPS
Sbjct: 159 NGQWLGGRQIRTNWAT---RKPS 178
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 129 (50.5 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L VRNL ++ + +L F FG++++I++ D +GF +VQY DP A +A ++
Sbjct: 297 LFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRNL 356
Query: 100 DGYLLLGRELTVVFAEENR 118
DG + GR L ++ A + +
Sbjct: 357 DGKIFQGRLLHILPASQKK 375
Score = 126 (49.4 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T ++++NL +D+R FG +G+L+ + +P+ + RGFGF ++ +A +A
Sbjct: 697 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKF-DRSARGFGFADFVSAREAENAMD 755
Query: 98 HMDGYLLLGRELTVVFAEE 116
+ LLGR L + FA E
Sbjct: 756 ALKNTHLLGRRLVLEFANE 774
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 125 (49.1 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 28 HYGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 87
H GG G D + V L + + FG++G + D + +D TG+PRGFGFV Y
Sbjct: 33 HSGG-GVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYA 91
Query: 88 DPADAADAKYHMDGYLLLGRELTV 111
D + D K D ++++G+++ +
Sbjct: 92 D-SSVVD-KVIQDNHIIIGKQVEI 113
Score = 95 (38.5 bits), Expect = 0.00056, P = 0.00056
Identities = 28/75 (37%), Positives = 39/75 (52%)
Query: 58 FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL-LLGRELTVVFAEE 116
F QFG LK+ + RD+ TG RGFGFV Y + D D + L G ++ + AE
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVTY-ESEDMVDHLLAKGNRIELSGTQVEIKKAEP 208
Query: 117 NRKKPSEMRA-RERF 130
KKP+ + +RF
Sbjct: 209 --KKPNSVTTPSKRF 221
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 124 (48.7 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 30/88 (34%), Positives = 45/88 (51%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L F ++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A ++G L G+ + V E KPS
Sbjct: 65 AARELNGKALDGKPIKV----EQATKPS 88
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 124 (48.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 30/88 (34%), Positives = 45/88 (51%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L F ++GR+ ++ L +D T + RGF FV + PADA D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A ++G L G+ + V E KPS
Sbjct: 65 AARELNGKALDGKPIKV----EQATKPS 88
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 114 (45.2 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 28/78 (35%), Positives = 38/78 (48%)
Query: 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 93
R+ S+ VRNL DC PEDL+ FG G + + + G RG G V++
Sbjct: 118 RNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITS--KGHHRGMGTVEFTKNESVQ 175
Query: 94 DAKYHMDGYLLLGRELTV 111
DA DG L + R+L V
Sbjct: 176 DAISKFDGALFMDRKLMV 193
Score = 31 (16.0 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 30 GGRGRDL 36
GGRGR L
Sbjct: 95 GGRGRTL 101
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 129 (50.5 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 33/91 (36%), Positives = 49/91 (53%)
Query: 35 DLPTS--LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 92
DL S L VRNL + EDL F ++G + +++ P D T +P+GF FV ++ P A
Sbjct: 358 DLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHA 417
Query: 93 ADAKYHMDGYLLLGRELTVVFAEENRKKPSE 123
A +DG + GR L V+ +K+ SE
Sbjct: 418 VKAYAEVDGQVFQGRMLHVL-PSTIKKEASE 447
Score = 100 (40.3 bits), Expect = 0.00044, P = 0.00044
Identities = 28/88 (31%), Positives = 43/88 (48%)
Query: 36 LP-TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY-TGE--PRGFGFVQYIDPAD 91
LP +L ++NL D E L+G F + G +K + + G GFGFV+Y P
Sbjct: 687 LPGCTLFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYRKPEQ 746
Query: 92 AADAKYHMDGYLLLGRELTVVFAEENRK 119
A A + G+++ G +L V +E K
Sbjct: 747 AQKALKQLQGHVVDGHKLEVRISERATK 774
>UNIPROTKB|Q0VCY7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9913 "Bos taurus" [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0000395 GeneTree:ENSGT00700000104103
KO:K12890 OrthoDB:EOG4WH8N5 EMBL:BC119930 IPI:IPI00692211
RefSeq:NP_001069862.1 UniGene:Bt.864 ProteinModelPortal:Q0VCY7
SMR:Q0VCY7 STRING:Q0VCY7 PRIDE:Q0VCY7 Ensembl:ENSBTAT00000049486
GeneID:615796 KEGG:bta:615796 CTD:6426 InParanoid:Q0VCY7
OMA:QVMEDLD NextBio:20899791 Uniprot:Q0VCY7
Length = 248
Score = 120 (47.3 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D R +D+ F ++G ++DI L ++ G P F FV++ DP DA DA Y
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 100 DGYLLLGRELTVVFAEENR 118
DGY G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
>UNIPROTKB|Q07955 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA;TAS]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA;IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 GO:GO:0001701
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471109
GO:GO:0060048 GO:GO:0006406 GO:GO:0071013 Reactome:REACT_1788
eggNOG:COG0724 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 GO:GO:0000395 KO:K12890 PDB:3BEG PDBsum:3BEG
CTD:6426 OMA:QVMEDLD EMBL:M72709 EMBL:M69040 EMBL:AB062124
EMBL:AK312781 EMBL:BC010264 EMBL:BC033785 IPI:IPI00215884
IPI:IPI00218591 IPI:IPI00218592 PIR:A40040 PIR:B40040 PIR:C40040
RefSeq:NP_001071634.1 RefSeq:NP_008855.1 UniGene:Hs.68714 PDB:1X4A
PDB:2O3D PDBsum:1X4A PDBsum:2O3D ProteinModelPortal:Q07955
SMR:Q07955 DIP:DIP-2155N IntAct:Q07955 MINT:MINT-5000565
STRING:Q07955 PhosphoSite:Q07955 DMDM:730773 PaxDb:Q07955
PeptideAtlas:Q07955 PRIDE:Q07955 DNASU:6426 Ensembl:ENST00000258962
Ensembl:ENST00000581979 Ensembl:ENST00000582730 GeneID:6426
KEGG:hsa:6426 UCSC:uc002ivi.3 UCSC:uc002ivj.3 GeneCards:GC17M056079
H-InvDB:HIX0173551 HGNC:HGNC:10780 HPA:CAB013073 MIM:600812
neXtProt:NX_Q07955 PharmGKB:PA35696 InParanoid:Q07955
PhylomeDB:Q07955 ChiTaRS:SRSF1 EvolutionaryTrace:Q07955
GenomeRNAi:6426 NextBio:24955 PMAP-CutDB:Q07955 Bgee:Q07955
CleanEx:HS_SFRS1 Genevestigator:Q07955 GermOnline:ENSG00000136450
Uniprot:Q07955
Length = 248
Score = 120 (47.3 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D R +D+ F ++G ++DI L ++ G P F FV++ DP DA DA Y
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 100 DGYLLLGRELTVVFAEENR 118
DGY G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
>UNIPROTKB|Q3YLA6 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9823 "Sus scrofa" [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice
site recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
GO:GO:0000395 GeneTree:ENSGT00700000104103 KO:K12890
OrthoDB:EOG4WH8N5 CTD:6426 OMA:QVMEDLD EMBL:DQ098951 EMBL:DQ098950
RefSeq:NP_001033096.1 UniGene:Ssc.7576 HSSP:Q07955
ProteinModelPortal:Q3YLA6 SMR:Q3YLA6 STRING:Q3YLA6 PRIDE:Q3YLA6
Ensembl:ENSSSCT00000019188 GeneID:654327 KEGG:ssc:654327
Uniprot:Q3YLA6
Length = 248
Score = 120 (47.3 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D R +D+ F ++G ++DI L ++ G P F FV++ DP DA DA Y
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 100 DGYLLLGRELTVVFAEENR 118
DGY G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
>UNIPROTKB|Q5R7H2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9601 "Pongo abelii" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG002295
GO:GO:0000395 KO:K12890 CTD:6426 EMBL:CR860145
RefSeq:NP_001126337.1 UniGene:Pab.7173 ProteinModelPortal:Q5R7H2
SMR:Q5R7H2 PRIDE:Q5R7H2 GeneID:100173318 KEGG:pon:100173318
InParanoid:Q5R7H2 Uniprot:Q5R7H2
Length = 248
Score = 120 (47.3 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D R +D+ F ++G ++DI L ++ G P F FV++ DP DA DA Y
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 100 DGYLLLGRELTVVFAEENR 118
DGY G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
>MGI|MGI:98283 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IGI;IDA] [GO:0016607 "nuclear
speck" evidence=ISO;IDA] [GO:0050733 "RS domain binding"
evidence=IPI] [GO:0060048 "cardiac muscle contraction"
evidence=IGI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98283 GO:GO:0005737
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
EMBL:AL593853 HOVERGEN:HBG002295 GO:GO:0000395
GeneTree:ENSGT00700000104103 KO:K12890 CTD:6426 EMBL:AK018176
EMBL:AK078715 EMBL:AK150535 EMBL:CU406964 EMBL:BC046773
EMBL:BC058627 IPI:IPI00420807 IPI:IPI00457656 IPI:IPI00515505
PIR:S26404 RefSeq:NP_001071635.1 RefSeq:NP_775550.2
UniGene:Mm.391719 UniGene:Mm.478968 PDB:1X4C PDBsum:1X4C
ProteinModelPortal:Q6PDM2 SMR:Q6PDM2 DIP:DIP-48723N IntAct:Q6PDM2
STRING:Q6PDM2 PhosphoSite:Q6PDM2 PaxDb:Q6PDM2 PRIDE:Q6PDM2
Ensembl:ENSMUST00000079866 Ensembl:ENSMUST00000139129 GeneID:110809
KEGG:mmu:110809 UCSC:uc007kvc.1 UCSC:uc007kvd.1 InParanoid:B2KGJ5
EvolutionaryTrace:Q6PDM2 NextBio:364697 Bgee:Q6PDM2
CleanEx:MM_SFRS1 Genevestigator:Q6PDM2
GermOnline:ENSMUSG00000018379 Uniprot:Q6PDM2
Length = 248
Score = 120 (47.3 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D R +D+ F ++G ++DI L ++ G P F FV++ DP DA DA Y
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 100 DGYLLLGRELTVVFAEENR 118
DGY G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
>RGD|1587490 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0016607
"nuclear speck" evidence=IEA;ISO] [GO:0050733 "RS domain binding"
evidence=IEA;ISO] [GO:0060048 "cardiac muscle contraction"
evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1587490
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 EMBL:CH473948 GO:GO:0071013
GO:GO:0000395 KO:K12890 OrthoDB:EOG4WH8N5 CTD:6426 IPI:IPI00780927
RefSeq:NP_001103022.1 UniGene:Rn.84878 SMR:D4A9L2
Ensembl:ENSRNOT00000055706 GeneID:689890 KEGG:rno:689890
NextBio:739704 Uniprot:D4A9L2
Length = 248
Score = 120 (47.3 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D R +D+ F ++G ++DI L ++ G P F FV++ DP DA DA Y
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 100 DGYLLLGRELTVVFAEENR 118
DGY G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 118 (46.6 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
+G P L V +L + + LRG F FG++ +I L +D TG +G+GF+ + D
Sbjct: 32 KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSEC 91
Query: 92 AADAKYHMDGYLLLGRELTV 111
A A ++G+ L GR + V
Sbjct: 92 ARRALEQLNGFELAGRPMRV 111
>DICTYBASE|DDB_G0288291 [details] [associations]
symbol:DDB_G0288291 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0288291 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000109 eggNOG:COG0724
RefSeq:XP_636795.1 ProteinModelPortal:Q54J52
EnsemblProtists:DDB0187876 GeneID:8626552 KEGG:ddi:DDB_G0288291
InParanoid:Q54J52 OMA:NMHESEI ProtClustDB:CLSZ2429905
Uniprot:Q54J52
Length = 123
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
+G + L V + D + LR F FG + D+ LP D+ T + +GFGF+ + P D
Sbjct: 9 KGVNKKNVLYVGGISDDVTIDILRAAFIPFGNINDVILPMDHKTQKLKGFGFIDFELPED 68
Query: 92 AADAKYHMDGYLLLGRELTVVFAE 115
AADA +M + GR + A+
Sbjct: 69 AADALDNMHESEIFGRVIKCSIAK 92
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 29/76 (38%), Positives = 39/76 (51%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
+ T + V NL + LR F +G + D + RD YT RGFGFV Y ++A A
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60
Query: 96 KYHMDGYLLLGRELTV 111
MDG L GR ++V
Sbjct: 61 VSGMDGKELNGRRVSV 76
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 32/83 (38%), Positives = 41/83 (49%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T+L V L E LR F QFG + D + D +G +GFGFV+Y D+A
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 98 HMDGYLLLGRELTVVFAEENRKK 120
MDG L G V+FAE R +
Sbjct: 116 GMDGKFLDG---WVIFAEYARPR 135
>UNIPROTKB|E2RJL3 [details] [associations]
symbol:SRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 OMA:QVMEDLD EMBL:AAEX03006566
ProteinModelPortal:E2RJL3 PRIDE:E2RJL3 Ensembl:ENSCAFT00000027630
NextBio:20895281 Uniprot:E2RJL3
Length = 253
Score = 120 (47.3 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D R +D+ F ++G ++DI L ++ G P F FV++ DP DA DA Y
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 100 DGYLLLGRELTVVFAEENR 118
DGY G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
>UNIPROTKB|J3KTL2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471109 UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1
EMBL:AC015813 ProteinModelPortal:J3KTL2 Ensembl:ENST00000584773
Uniprot:J3KTL2
Length = 253
Score = 120 (47.3 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D R +D+ F ++G ++DI L ++ G P F FV++ DP DA DA Y
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 100 DGYLLLGRELTVVFAEENR 118
DGY G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
>UNIPROTKB|Q5ZML3 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295
KO:K12890 CTD:6426 EMBL:AJ719371 IPI:IPI00573494
RefSeq:NP_001107213.1 UniGene:Gga.4490 ProteinModelPortal:Q5ZML3
SMR:Q5ZML3 STRING:Q5ZML3 PRIDE:Q5ZML3 GeneID:772264 KEGG:gga:772264
eggNOG:NOG302520 InParanoid:Q5ZML3 NextBio:20922455 Uniprot:Q5ZML3
Length = 257
Score = 120 (47.3 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D R +D+ F ++G ++DI L ++ G P F FV++ DP DA DA Y
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 74
Query: 100 DGYLLLGRELTVVFAEENR 118
DGY G L V F R
Sbjct: 75 DGYDYDGYRLRVEFPRSGR 93
>UNIPROTKB|E1C8Y9 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043274 "phospholipase binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892 OMA:SPPPRRX
EMBL:AADN02044872 IPI:IPI00580212 RefSeq:NP_001182483.1
UniGene:Gga.13500 ProteinModelPortal:E1C8Y9 SMR:E1C8Y9 PRIDE:E1C8Y9
Ensembl:ENSGALT00000000735 GeneID:419815 KEGG:gga:419815
NextBio:20822814 Uniprot:E1C8Y9
Length = 164
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
L + V NL ++ +L FG +G L+ +++ R+ P GF FV++ DP DAADA
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG L G + V + N +K S R
Sbjct: 63 VRELDGRTLCGCRVRVELS--NGEKRSRNR 90
>UNIPROTKB|Q5ZLF9 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 OrthoDB:EOG4RJG2V EMBL:AADN02003156
EMBL:AJ719775 IPI:IPI00651527 UniGene:Gga.4502 STRING:Q5ZLF9
Ensembl:ENSGALT00000032618 Uniprot:Q5ZLF9
Length = 123
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 30/91 (32%), Positives = 44/91 (48%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ + L R +D+ F +GR++DI L R GFGFV++ DP DA DA Y +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--------GFGFVEFEDPRDADDAVYEL 57
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERF 130
DG L +T+ A + R +RF
Sbjct: 58 DGKELCSERVTIEHARARSRGRGRGRYSDRF 88
>UNIPROTKB|Q3SZR8 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9913 "Bos taurus" [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 HSSP:Q07955
EMBL:BC102735 IPI:IPI00689088 RefSeq:NP_001029872.1 UniGene:Bt.4741
ProteinModelPortal:Q3SZR8 SMR:Q3SZR8 STRING:Q3SZR8 PRIDE:Q3SZR8
Ensembl:ENSBTAT00000051953 GeneID:540276 KEGG:bta:540276 CTD:6428
InParanoid:Q3SZR8 KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12
NextBio:20878535 Uniprot:Q3SZR8
Length = 164
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
L + V NL ++ +L FG +G L+ +++ R+ P GF FV++ DP DAADA
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG L G + V + N +K S R
Sbjct: 63 VRELDGRTLCGCRVRVELS--NGEKRSRNR 90
>UNIPROTKB|F2Z4N6 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:AAEX03008285 RefSeq:XP_532124.3 UniGene:Cfa.246
ProteinModelPortal:F2Z4N6 SMR:F2Z4N6 PRIDE:F2Z4N6
Ensembl:ENSCAFT00000002186 GeneID:403687 KEGG:cfa:403687
NextBio:20817191 Uniprot:F2Z4N6
Length = 164
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
L + V NL ++ +L FG +G L+ +++ R+ P GF FV++ DP DAADA
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG L G + V + N +K S R
Sbjct: 63 VRELDGRTLCGCRVRVELS--NGEKRSRNR 90
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
L + V NL ++ +L FG +G L+ +++ R+ P GF FV++ DP DAADA
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG L G + V + N +K S R
Sbjct: 63 VRELDGRTLCGCRVRVELS--NGEKRSRNR 90
>UNIPROTKB|P84103 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
EMBL:Z85986 eggNOG:NOG302928 CTD:6428 KO:K12892 OMA:SPPPRRX
OrthoDB:EOG4VDQ12 EMBL:L10838 EMBL:AF107405 EMBL:BT007017
EMBL:BC000914 EMBL:BC069018 IPI:IPI00010204 PIR:I54089
RefSeq:NP_003008.1 UniGene:Hs.405144 PDB:2I2Y PDB:2I38 PDBsum:2I2Y
PDBsum:2I38 ProteinModelPortal:P84103 SMR:P84103 IntAct:P84103
MINT:MINT-5002707 STRING:P84103 PhosphoSite:P84103 DMDM:51338672
PaxDb:P84103 PRIDE:P84103 DNASU:6428 Ensembl:ENST00000373715
GeneID:6428 KEGG:hsa:6428 UCSC:uc003omj.3 GeneCards:GC06P036562
HGNC:HGNC:10785 HPA:CAB012986 MIM:603364 neXtProt:NX_P84103
PharmGKB:PA35701 InParanoid:P84103 PhylomeDB:P84103 ChiTaRS:SRSF3
EvolutionaryTrace:P84103 GenomeRNAi:6428 NextBio:24965
ArrayExpress:P84103 Bgee:P84103 CleanEx:HS_SFRS3
Genevestigator:P84103 GermOnline:ENSG00000112081 Uniprot:P84103
Length = 164
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
L + V NL ++ +L FG +G L+ +++ R+ P GF FV++ DP DAADA
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG L G + V + N +K S R
Sbjct: 63 VRELDGRTLCGCRVRVELS--NGEKRSRNR 90
>UNIPROTKB|I3LAE9 [details] [associations]
symbol:LOC100523801 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452
Ensembl:ENSSSCT00000030748 OMA:RSRSMYR Uniprot:I3LAE9
Length = 164
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
L + V NL ++ +L FG +G L+ +++ R+ P GF FV++ DP DAADA
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG L G + V + N +K S R
Sbjct: 63 VRELDGRTLCGCRVRVELS--NGEKRSRNR 90
>MGI|MGI:98285 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0043274 "phospholipase binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98285 GO:GO:0008286
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:X53824 EMBL:X91656 EMBL:AK011657 EMBL:AK078891
EMBL:AK134177 EMBL:AK135298 EMBL:AK145089 EMBL:AK145715
EMBL:AK146010 EMBL:AK146253 EMBL:AK150912 EMBL:AK153209
EMBL:BC068111 EMBL:BC071196 EMBL:BC083316 IPI:IPI00129323
IPI:IPI00221826 PIR:S14016 RefSeq:NP_038691.1 UniGene:Mm.473125
UniGene:Mm.6787 ProteinModelPortal:P84104 SMR:P84104 IntAct:P84104
STRING:P84104 PhosphoSite:P84104 PaxDb:P84104 PRIDE:P84104
Ensembl:ENSMUST00000037776 Ensembl:ENSMUST00000130216 GeneID:20383
KEGG:mmu:20383 InParanoid:P84104 NextBio:298302 Bgee:P84104
CleanEx:MM_SFRS3 Genevestigator:P84104
GermOnline:ENSMUSG00000071172 Uniprot:P84104
Length = 164
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
L + V NL ++ +L FG +G L+ +++ R+ P GF FV++ DP DAADA
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG L G + V + N +K S R
Sbjct: 63 VRELDGRTLCGCRVRVELS--NGEKRSRNR 90
>RGD|1309233 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0043274
"phospholipase binding" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309233 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:CH473988 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 HOGENOM:HOG000276234 CTD:6428
KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12 EMBL:DQ480748
IPI:IPI00372826 RefSeq:NP_001041372.1 UniGene:Rn.9002 SMR:Q0ZFS8
STRING:Q0ZFS8 Ensembl:ENSRNOT00000000627 GeneID:361814
KEGG:rno:361814 UCSC:RGD:1309233 InParanoid:Q0ZFS8 NextBio:677698
Genevestigator:Q0ZFS8 Uniprot:Q0ZFS8
Length = 164
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
L + V NL ++ +L FG +G L+ +++ R+ P GF FV++ DP DAADA
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG L G + V + N +K S R
Sbjct: 63 VRELDGRTLCGCRVRVELS--NGEKRSRNR 90
>ZFIN|ZDB-GENE-030616-631 [details] [associations]
symbol:srsf3a "serine/arginine-rich splicing factor
3a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030616-631 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q61474 EMBL:AL732567
GeneTree:ENSGT00700000104452 HOVERGEN:HBG104956 OMA:RSRSMYR
EMBL:BC071322 IPI:IPI00510131 RefSeq:NP_001002053.1
UniGene:Dr.40822 SMR:Q801U3 STRING:Q801U3
Ensembl:ENSDART00000028217 GeneID:368925 KEGG:dre:368925 CTD:368925
InParanoid:Q801U3 OrthoDB:EOG4RJG36 NextBio:20813270 Uniprot:Q801U3
Length = 174
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 32/94 (34%), Positives = 47/94 (50%)
Query: 34 RDLPTS--LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
RD P + V NL + +L FG +G L+ +++ R+ P GF FV++ DP D
Sbjct: 8 RDCPLDCKVYVGNLGNSGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRD 62
Query: 92 AADAKYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
A DA +DG L G + V + N +K S R
Sbjct: 63 ATDAVRELDGRTLCGCRVRVEMS--NGEKRSRFR 94
>ZFIN|ZDB-GENE-030131-5228 [details] [associations]
symbol:rnps1 "RNA binding protein S1, serine-rich
domain" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5228 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 GeneTree:ENSGT00700000104336 CTD:10921
eggNOG:NOG331533 HOGENOM:HOG000044325 KO:K14325 EMBL:BC057251
EMBL:BC065953 IPI:IPI00490683 RefSeq:NP_956055.1 UniGene:Dr.75879
ProteinModelPortal:Q6PG31 STRING:Q6PG31 Ensembl:ENSDART00000128731
GeneID:327020 KEGG:dre:327020 InParanoid:Q6PG31 NextBio:20809844
Bgee:Q6PG31 Uniprot:Q6PG31
Length = 283
Score = 120 (47.3 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRD-YYTGEPRGFGFVQYIDPADAADA 95
PT L + L + + ++ F +G++K I +P D + +G+ +V+Y P DA A
Sbjct: 136 PTKLYLGRLTRNVTKDHIQEIFATYGKIKMIDMPSDRLHPNVSKGYAYVEYESPEDAQKA 195
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
HMDG + G+E+T R +P+ R
Sbjct: 196 LKHMDGGQIDGQEITATAILAQRIRPAPRR 225
>ZFIN|ZDB-GENE-040426-1950 [details] [associations]
symbol:srsf1a "serine/arginine-rich splicing
factor 1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1950 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890
EMBL:BX511308 EMBL:BC055511 EMBL:BC153596 EMBL:BC153597
IPI:IPI00487017 RefSeq:NP_998180.1 UniGene:Dr.75732
ProteinModelPortal:Q7SXP4 SMR:Q7SXP4 STRING:Q7SXP4
Ensembl:ENSDART00000080413 GeneID:406288 KEGG:dre:406288 CTD:406288
InParanoid:Q7SXP4 OrthoDB:EOG4WH8N5 NextBio:20817919
ArrayExpress:Q7SXP4 Bgee:Q7SXP4 Uniprot:Q7SXP4
Length = 257
Score = 119 (46.9 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D R +D+ F ++G ++DI L ++ G P F FV++ DP DA DA Y
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYAR 73
Query: 100 DGYLLLGRELTVVFAEENR 118
DGY G L V F R
Sbjct: 74 DGYDYDGYRLRVEFPRSGR 92
>ZFIN|ZDB-GENE-040426-1467 [details] [associations]
symbol:srsf1b "serine/arginine-rich splicing
factor 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1467 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL929224 EMBL:CU928208 IPI:IPI00506820
Ensembl:ENSDART00000110646 ArrayExpress:F1QXQ1 Bgee:F1QXQ1
Uniprot:F1QXQ1
Length = 258
Score = 119 (46.9 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL D R +D+ F ++G ++DI L ++ G P F FV++ DP DA DA Y
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDAEDAVYGR 73
Query: 100 DGYLLLGRELTVVFAEENR 118
DGY G L V F R
Sbjct: 74 DGYDYDGYRLRVEFPRSGR 92
>TAIR|locus:2184367 [details] [associations]
symbol:AT5G04600 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006333 "chromatin assembly or disassembly" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0051604
"protein maturation" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162875 eggNOG:NOG244773
HOGENOM:HOG000242795 KO:K14838 HSSP:Q61474 UniGene:At.4932
UniGene:At.65019 EMBL:AF378899 EMBL:AY055787 EMBL:AY063822
EMBL:AY123013 IPI:IPI00541604 PIR:T48456 RefSeq:NP_196080.1
ProteinModelPortal:Q9LZ65 SMR:Q9LZ65 IntAct:Q9LZ65 STRING:Q9LZ65
PaxDb:Q9LZ65 PRIDE:Q9LZ65 EnsemblPlants:AT5G04600.1 GeneID:830337
KEGG:ath:AT5G04600 TAIR:At5g04600 InParanoid:Q9LZ65 OMA:IGHIPHG
PhylomeDB:Q9LZ65 ProtClustDB:CLSN2686415 ArrayExpress:Q9LZ65
Genevestigator:Q9LZ65 Uniprot:Q9LZ65
Length = 222
Score = 117 (46.2 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T L + + H ++ F QFG +K + + R+ TG+ + FGF+Q+ DP A A
Sbjct: 60 TVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 119
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
M+ YLL+ L V E KP+ R
Sbjct: 120 AMNDYLLMEHMLKVHVIEPENVKPNLWR 147
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 125 (49.1 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G R + T++ V+NL D + L+ F QFG++ + + RD +G RGFGFV +
Sbjct: 184 GARAMEF-TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKH 241
Query: 90 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
+A A +M+G + GR L V A++ ++ +E++ R
Sbjct: 242 EEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRR 279
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 125 (49.1 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 27/90 (30%), Positives = 52/90 (57%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T++ V+NL +DL+ FG++G++ + +D G+ +GFGFV + + DAA A
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVE 273
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
++G+ +E V A++ ++ +E+R R
Sbjct: 274 SLNGHKFDDKEWYVGRAQKKSERETELRVR 303
Score = 102 (41.0 bits), Expect = 0.00017, P = 0.00017
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
TSL V +L + L FGQ G + + + RD T G+G+V + +P DAA A
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRA 126
++ L G+ + V+++ + PS R+
Sbjct: 96 ELNYIPLYGKPIRVMYSHRD---PSVRRS 121
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
++L V+NL E L+ F FG + + RD G +G GFV + P +A +A
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMS 376
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARERF 130
+ G ++ + L V A+ RK+ +R + +F
Sbjct: 377 QLSGKMIESKPLYVAIAQ--RKEDRRVRLQAQF 407
>UNIPROTKB|F1RY92 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 OMA:SPPPRRX EMBL:CU633682
Ensembl:ENSSSCT00000001743 Uniprot:F1RY92
Length = 164
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
L + V NL ++ +L FG +G L+ +++ R+ P GF FV++ DP DAADA
Sbjct: 8 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADA 62
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMR 125
+DG L G + V + N +K S R
Sbjct: 63 VRELDGGTLCGCRVRVELS--NGEKRSRNR 90
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 31/91 (34%), Positives = 45/91 (49%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
+ L V L + LR F FG++K+ L RD T P+GFGF+ + DA A
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSEMRA 126
+DG ++ GR ++F E K E+RA
Sbjct: 65 LKSLDGKIVDGR---LIFVEV-AKNAEEVRA 91
>ZFIN|ZDB-GENE-071005-2 [details] [associations]
symbol:srsf3b "serine/arginine-rich splicing factor
3b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-071005-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 OMA:SPPPRRX OrthoDB:EOG4VDQ12
HOVERGEN:HBG104956 EMBL:CU062631 IPI:IPI00785666 UniGene:Dr.75959
SMR:A5WWG4 Ensembl:ENSDART00000106636 Ensembl:ENSDART00000135829
Ensembl:ENSDART00000144309 Ensembl:ENSDART00000145685
Uniprot:A5WWG4
Length = 164
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 34 RDLPTS--LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
RD P + V NL ++ +L FG +G L+ +++ R+ P GF FV++ DP D
Sbjct: 3 RDCPLDCKVYVGNLGNNGNKSELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRD 57
Query: 92 AADAKYHMDGYLLLGRELTVVFAEENRKKPS 122
A DA +DG L G + V + ++ S
Sbjct: 58 ATDAVRELDGRTLCGCRVRVELSNGEKRTRS 88
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 118 (46.6 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 32/95 (33%), Positives = 47/95 (49%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
+SL V NL + +R F +G + D+ L R + RG F+Q+ DA AKY
Sbjct: 127 SSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVAKY 186
Query: 98 HMDGYLLLG--RELTVVFAEENRKKPSEMRARERF 130
MD Y++ G R LTV F E +K S + ++
Sbjct: 187 GMDRYMIEGASRPLTVKFVEREKKGSSSTSSGSQY 221
Score = 112 (44.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 95
+ T+L++ L D +L F +FG ++ + R TG +GFV Y+ AA A
Sbjct: 39 MKTNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAA 98
Query: 96 KYHMDGYLLLGRELTVVFAEENRKKPSE 123
MDGY G+ L V FA +PSE
Sbjct: 99 VNGMDGYETRGKRLKVAFA-----RPSE 121
>UNIPROTKB|F1RVD1 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 EMBL:CU627987
RefSeq:XP_003129409.3 UniGene:Ssc.55768 Ensembl:ENSSSCT00000010127
GeneID:100511704 KEGG:ssc:100511704 Uniprot:F1RVD1
Length = 216
Score = 116 (45.9 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID--P 89
+G++ P + V L D E ++ FG FG +++I LP D T E RGF F+ Y D P
Sbjct: 23 KGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEP 82
Query: 90 ADAA-DAKYHMDG 101
+++YH G
Sbjct: 83 VKKLLESRYHQIG 95
>TAIR|locus:2083936 [details] [associations]
symbol:RS2Z32 "arginine/serine-rich zinc
knuckle-containing protein 32" species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA;TAS] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132966
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0000398 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 EMBL:AY095996 EMBL:BT001034
EMBL:AK316697 IPI:IPI00525747 PIR:F84791 PIR:T45890
RefSeq:NP_190918.3 RefSeq:NP_851015.1 UniGene:At.26777
ProteinModelPortal:Q9FYB7 SMR:Q9FYB7 STRING:Q9FYB7 PRIDE:Q9FYB7
EnsemblPlants:AT3G53500.2 GeneID:824518 KEGG:ath:AT3G53500
TAIR:At3g53500 InParanoid:Q9FYB7 OMA:GSPKENG PhylomeDB:Q9FYB7
ProtClustDB:CLSN2680397 Genevestigator:Q9FYB7 Uniprot:Q9FYB7
Length = 284
Score = 119 (46.9 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 32/88 (36%), Positives = 45/88 (51%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T L V L R DL F ++GR++D+ + RDY FV++ DP DA DA+Y
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDY--------AFVEFSDPRDADDARY 62
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMR 125
++DG G +TV E +R P R
Sbjct: 63 YLDGRDFDGSRITV---EASRGAPRGSR 87
>ASPGD|ASPL0000001581 [details] [associations]
symbol:AN10765 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016282 "eukaryotic 43S preinitiation complex"
evidence=IEA] [GO:0071541 "eukaryotic translation initiation factor
3 complex, eIF3m" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0071540 "eukaryotic translation initiation factor 3 complex,
eIF3e" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001301
GO:GO:0003743 HSSP:O75821 OMA:SNLSEAM HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353 EMBL:AACD01000103
ProteinModelPortal:C8V330 STRING:Q5B0B3
EnsemblFungi:CADANIAT00007002 Uniprot:C8V330
Length = 289
Score = 119 (46.9 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
DL T L V N+ ++LR F +FGR+ ++L RD T +GF F+ + D +DAA
Sbjct: 207 DLAT-LRVTNVSELAEEQELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDAAR 265
Query: 95 AKYHMDGYLLLGRELTVVFAE 115
A MDG+ L V FA+
Sbjct: 266 ACDKMDGFGYRHLILRVEFAK 286
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 118 (46.6 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
+G P L V +L + + LRG F FG++ +I L +D TG +G+GF+ + D
Sbjct: 87 KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSEC 146
Query: 92 AADAKYHMDGYLLLGRELTV 111
A A ++G+ L GR + V
Sbjct: 147 ARRALEQLNGFELAGRPMRV 166
>UNIPROTKB|B7ZMD9 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 UniGene:Hs.380450 EMBL:AC007322
HGNC:HGNC:23915 EMBL:BC136862 EMBL:BC144459 IPI:IPI00945061
SMR:B7ZMD9 Ensembl:ENST00000418956 UCSC:uc010nxb.2 Uniprot:B7ZMD9
Length = 459
Score = 122 (48.0 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KKPS
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPS 87
>UNIPROTKB|J3KPK3 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC007322 HGNC:HGNC:23916 ProteinModelPortal:J3KPK3
Ensembl:ENST00000382658 Uniprot:J3KPK3
Length = 459
Score = 122 (48.0 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KKPS
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPS 87
>UNIPROTKB|J3KQ82 [details] [associations]
symbol:RBMY1J "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC023342 EMBL:AC007320 HGNC:HGNC:23974 HGNC:HGNC:23917
ProteinModelPortal:J3KQ82 Ensembl:ENST00000445779
Ensembl:ENST00000454978 Uniprot:J3KQ82
Length = 459
Score = 122 (48.0 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KKPS
Sbjct: 64 AAKDMNGTSLHGKAIKV----EQAKKPS 87
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V L + + L F FG + ++ + +D T RGFGF+ + DP A+DA M
Sbjct: 8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67
Query: 100 DGYLLLGRELTVVFAEENRK 119
+G L GR++ V A ++ +
Sbjct: 68 NGESLDGRQIRVDHAGKSAR 87
>UNIPROTKB|I3LP80 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
EMBL:CU627987 Ensembl:ENSSSCT00000027195 OMA:NVVEMEM Uniprot:I3LP80
Length = 231
Score = 116 (45.9 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID--P 89
+G++ P + V L D E ++ FG FG +++I LP D T E RGF F+ Y D P
Sbjct: 19 KGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEP 78
Query: 90 ADAA-DAKYHMDG 101
+++YH G
Sbjct: 79 VKKLLESRYHQIG 91
>UNIPROTKB|A6NDE4 [details] [associations]
symbol:RBMY1B "RNA-binding motif protein, Y chromosome,
family 1 member B" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=TAS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0005634 "nucleus" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008584
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AC010141 UniGene:Hs.380450 HPA:HPA001534
IPI:IPI00479500 RefSeq:NP_001006121.1 UniGene:Hs.725744
ProteinModelPortal:A6NDE4 SMR:A6NDE4 STRING:A6NDE4 PaxDb:A6NDE4
PRIDE:A6NDE4 Ensembl:ENST00000383020 GeneID:378948 KEGG:hsa:378948
UCSC:uc004fup.4 CTD:378948 GeneCards:GC0YP023674 HGNC:HGNC:23914
neXtProt:NX_A6NDE4 PharmGKB:PA134872137 eggNOG:NOG140744
InParanoid:A6NDE4 OMA:PRDYAYC OrthoDB:EOG4TF0N7 GenomeRNAi:378948
NextBio:100871 ArrayExpress:A6NDE4 Bgee:A6NDE4 CleanEx:HS_RBMY1B
Genevestigator:A6NDE4 Uniprot:A6NDE4
Length = 496
Score = 122 (48.0 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KKPS
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPS 87
>UNIPROTKB|A6NEQ0 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 HPA:HPA001534 UniGene:Hs.725744 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00472030 RefSeq:NP_001006118.2
ProteinModelPortal:A6NEQ0 SMR:A6NEQ0 STRING:A6NEQ0
PhosphoSite:A6NEQ0 PRIDE:A6NEQ0 DNASU:378950
Ensembl:ENST00000382659 GeneID:378950 KEGG:hsa:378950
UCSC:uc004fux.4 CTD:378950 GeneCards:GC0YM024027 HGNC:HGNC:23916
neXtProt:NX_A6NEQ0 PharmGKB:PA134905273 OMA:PYCDREH
GenomeRNAi:378950 NextBio:100879 ArrayExpress:A6NEQ0 Bgee:A6NEQ0
Genevestigator:A6NEQ0 Uniprot:A6NEQ0
Length = 496
Score = 122 (48.0 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KKPS
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPS 87
>UNIPROTKB|P0C7P1 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 UniGene:Hs.380450 HPA:HPA001534 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00215689 RefSeq:NP_001006120.2
ProteinModelPortal:P0C7P1 SMR:P0C7P1 PhosphoSite:P0C7P1
DMDM:190360153 PRIDE:P0C7P1 Ensembl:ENST00000382677
Ensembl:ENST00000382680 GeneID:378949 KEGG:hsa:378949
UCSC:uc004fuo.4 CTD:378949 GeneCards:GC0YM024026 HGNC:HGNC:23915
neXtProt:NX_P0C7P1 PharmGKB:PA134863616 InParanoid:P0C7P1
OMA:FIGGFNR GenomeRNAi:378949 NextBio:100875 ArrayExpress:P0C7P1
Bgee:P0C7P1 Genevestigator:P0C7P1 Uniprot:P0C7P1
Length = 496
Score = 122 (48.0 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KKPS
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPS 87
>UNIPROTKB|P0DJD3 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member A1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0000381
InterPro:IPR012604 Pfam:PF08081 EMBL:X76059 EMBL:BC047768
EMBL:BC070298 EMBL:AC010141 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 RefSeq:NP_005049.1 UniGene:Hs.380450
PDB:2FY1 PDBsum:2FY1 ProteinModelPortal:P0DJD3 SMR:P0DJD3
DMDM:27805716 PRIDE:P0DJD3 Ensembl:ENST00000303902
Ensembl:ENST00000382707 GeneID:5940 KEGG:hsa:5940 CTD:5940
GeneCards:GC0YP023675 HGNC:HGNC:9912 HPA:HPA001534 MIM:400006
neXtProt:NX_P0DJD3 OMA:PREYASE PhylomeDB:P0DJD3 GenomeRNAi:5940
Bgee:P0DJD3 CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622
Uniprot:P0DJD3
Length = 496
Score = 122 (48.0 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KKPS
Sbjct: 64 AAKDMNGKSLHGKAIKV----EQAKKPS 87
>UNIPROTKB|Q15415 [details] [associations]
symbol:RBMY1F "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 HPA:HPA001534
MIM:400006 eggNOG:NOG140744 OrthoDB:EOG4TF0N7 EMBL:X76060
EMBL:AK313597 EMBL:AC023342 EMBL:AC007320 EMBL:BC030018
EMBL:BC152392 IPI:IPI00413949 IPI:IPI00879122 PIR:B49418
RefSeq:NP_001006117.2 RefSeq:NP_689798.1 UniGene:Hs.567746
HSSP:Q14011 ProteinModelPortal:Q15415 SMR:Q15415 STRING:Q15415
PhosphoSite:Q15415 PaxDb:Q15415 PRIDE:Q15415 DNASU:159163
DNASU:378951 Ensembl:ENST00000250831 Ensembl:ENST00000303766
Ensembl:ENST00000414629 GeneID:159163 GeneID:378951 KEGG:hsa:159163
KEGG:hsa:378951 UCSC:uc004fva.3 UCSC:uc010nxh.3 CTD:159163
CTD:378951 GeneCards:GC0YM024314 GeneCards:GC0YP024456
HGNC:HGNC:23974 HGNC:HGNC:23917 neXtProt:NX_Q15415
PharmGKB:PA134946298 InParanoid:Q15415 OMA:KDMNGTS PhylomeDB:Q15415
NextBio:87890 Bgee:Q15415 CleanEx:HS_RBMY1F Genevestigator:Q15415
Uniprot:Q15415
Length = 496
Score = 122 (48.0 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D P L + L + + L+ FG+ G + ++ L +D T + RGF F+ + +PADA +
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKN 63
Query: 95 AKYHMDGYLLLGRELTVVFAEENRKKPS 122
A M+G L G+ + V E KKPS
Sbjct: 64 AAKDMNGTSLHGKAIKV----EQAKKPS 87
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 123 (48.4 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G R + T++ V+NL D + L+ F +FG++ + + RD +G RGFGFV +
Sbjct: 184 GARAMEF-TNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDD-SGHSRGFGFVNFQKH 241
Query: 90 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
+A A M+G + GR L V A++ ++ SE++ R
Sbjct: 242 EEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRR 279
>UNIPROTKB|Q66II8 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0060218 GO:GO:0043484
GO:GO:0000398 eggNOG:COG0724 KO:K11093 InterPro:IPR022023
Pfam:PF12220 CTD:6625 GeneTree:ENSGT00530000063750
OrthoDB:EOG4CJVJ7 HOVERGEN:HBG012300 EMBL:CR760195 EMBL:BC081331
RefSeq:NP_001008126.1 UniGene:Str.26779 ProteinModelPortal:Q66II8
STRING:Q66II8 Ensembl:ENSXETT00000049555 GeneID:493488
KEGG:xtr:493488 Xenbase:XB-GENE-992818 InParanoid:Q66II8
OMA:RHDKYDR Bgee:Q66II8 Uniprot:Q66II8
Length = 471
Score = 106 (42.4 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98
+L V + +D LR F +G +K I++ + +G+PRG+ F++Y D A H
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 99 MDGYLLLGRELTV 111
DG + GR + V
Sbjct: 164 ADGKKIDGRRVLV 176
Score = 36 (17.7 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 106 GRELTVVFAEENRKKPSEMRARER 129
GR+ T + E +R + E RER
Sbjct: 212 GRDDTSRYDERDRDRERERDRRER 235
Score = 31 (16.0 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 117 NRKKPSEMRARER 129
+R+K R+RER
Sbjct: 259 SREKEERKRSRER 271
Score = 31 (16.0 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 115 EENRKKPSEMRARER 129
+ +RK+ S R R+R
Sbjct: 292 DRDRKRRSRSRERKR 306
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V L + E L F ++G++ ++ + +D + RGFGFV + +P DA DA M
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 100 DGYLLLGRELTV 111
+G + GR++ V
Sbjct: 68 NGKSVDGRQIRV 79
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L +D ++L+ FGQ+G +++ L D TG +GF F+ Y A +A
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 100 DGYLLLGRELTVVFAEEN 117
+G L GR++ V A EN
Sbjct: 80 NGIDLQGRKIRVNIAREN 97
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V +L +D ++L+ FGQ+G +++ L D TG +GF F+ Y A +A
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 100 DGYLLLGRELTVVFAEEN 117
+G L GR++ V A EN
Sbjct: 80 NGIDLQGRKIRVNIAREN 97
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 113 (44.8 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 27/98 (27%), Positives = 53/98 (54%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G + ++ T++ ++N + E L+ F QFG+ + + RD G+ +GFGFV Y
Sbjct: 97 GAKAKEF-TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKH 154
Query: 90 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
DA A M+G + G+ + V A++ ++ +E++ +
Sbjct: 155 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRK 192
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 122 (48.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/98 (28%), Positives = 55/98 (56%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G + ++ T++ ++N + E+LR F QFG+ + + RD +G+ +GFGFV Y
Sbjct: 113 GAKAKEF-TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKH 170
Query: 90 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
DA A M+G + G+ + V A++ ++ +E++ +
Sbjct: 171 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRK 208
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 119 (46.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + ++ + FG G ++ L RD TG+ G+GFV Y DP
Sbjct: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DADKAINTLNGLKLQTKTIKVSYA 115
Score = 97 (39.2 bits), Expect = 0.00027, P = 0.00027
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL + L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F + K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 119 (46.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + ++ + FG G ++ L RD TG+ G+GFV Y DP
Sbjct: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DADKAINTLNGLKLQTKTIKVSYA 115
Score = 97 (39.2 bits), Expect = 0.00027, P = 0.00027
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL + L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F + K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 119 (46.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + ++ + FG G ++ L RD TG+ G+GFV Y DP
Sbjct: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DADKAINTLNGLKLQTKTIKVSYA 115
Score = 97 (39.2 bits), Expect = 0.00027, P = 0.00027
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL + L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F + K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 119 (46.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + ++ + FG G ++ L RD TG+ G+GFV Y DP
Sbjct: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DADKAINTLNGLKLQTKTIKVSYA 115
Score = 97 (39.2 bits), Expect = 0.00027, P = 0.00027
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL + L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F + K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 119 (46.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + ++ + FG G ++ L RD TG+ G+GFV Y DP
Sbjct: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DADKAINTLNGLKLQTKTIKVSYA 115
Score = 97 (39.2 bits), Expect = 0.00027, P = 0.00027
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL + L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F + K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
>TAIR|locus:2080772 [details] [associations]
symbol:EIF3G1 "eukaryotic translation initiation factor
3G1" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS;TAS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006413 "translational
initiation" evidence=TAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005852 "eukaryotic translation initiation factor
3 complex" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00343 SMART:SM00360 GO:GO:0005886 EMBL:CP002686
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003743
GO:GO:0005852 KO:K03248 OMA:SNLSEAM InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 IPI:IPI00938678
RefSeq:NP_001154607.1 UniGene:At.25153 ProteinModelPortal:F4J6A1
SMR:F4J6A1 PRIDE:F4J6A1 EnsemblPlants:AT3G11400.2 GeneID:820313
KEGG:ath:AT3G11400 Uniprot:F4J6A1
Length = 321
Score = 118 (46.6 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/71 (39%), Positives = 37/71 (52%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
R R+ S+ V NL D R DL F FG + +Y+ D TG RGFGFV ++ D
Sbjct: 234 RRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSRED 293
Query: 92 AADAKYHMDGY 102
A A ++GY
Sbjct: 294 AQRAINKLNGY 304
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 119 (46.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G D T+L+V L + ++ + FG G ++ L RD TG+ G+GFV Y DP
Sbjct: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
Query: 91 DAADAKYHMDGYLLLGRELTVVFA 114
DA A ++G L + + V +A
Sbjct: 92 DADKAINTLNGLKLQTKTIKVSYA 115
Score = 97 (39.2 bits), Expect = 0.00027, P = 0.00027
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V NL + L FG FG + ++ + RD+ T + +GFGFV + +AA A +
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 100 DGYLLLGRELTVVFAEENRKK 120
+GY L R L V F + K
Sbjct: 347 NGYRLGERVLQVSFKTSKQHK 367
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 119 (46.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
+G P L V +L + + LRG F FGR++ I L D TG +G+GF+ + D
Sbjct: 87 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSEC 146
Query: 92 AADAKYHMDGYLLLGRELTV 111
A A ++G+ L GR + V
Sbjct: 147 AKKALEQLNGFELAGRPMKV 166
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/98 (33%), Positives = 53/98 (54%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G R + T++ V+NL D L+ F QFG++ + + RD +G RGFGFV +
Sbjct: 184 GARALEF-TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDD-SGHSRGFGFVNFEKH 241
Query: 90 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
DA A M+G + GR L V A++ ++ +E++ R
Sbjct: 242 EDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRR 279
>UNIPROTKB|C9JE21 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010655
EMBL:AC018635 HGNC:HGNC:21863 ChiTaRS:RBM28 IPI:IPI00944978
ProteinModelPortal:C9JE21 SMR:C9JE21 STRING:C9JE21
Ensembl:ENST00000459726 ArrayExpress:C9JE21 Bgee:C9JE21
Uniprot:C9JE21
Length = 204
Score = 113 (44.8 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D L++RNL C +DL+ F QFG + ++ +PR G+ RGFGFVQ+ + +A
Sbjct: 145 DKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKP-DGKMRGFGFVQFKNLLEAGK 203
Query: 95 A 95
A
Sbjct: 204 A 204
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 31/98 (31%), Positives = 53/98 (54%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G R + T++ V+NL D + L+ F QFG++ + + RD +G R FGFV +
Sbjct: 184 GARALEF-TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKH 241
Query: 90 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
+A A HM+G + GR L A++ ++ +E++ R
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRR 279
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 28/98 (28%), Positives = 55/98 (56%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G + ++ T++ ++N + E+LR F QFG+ + + RD +G+ +GFGFV Y
Sbjct: 184 GAKAKEF-TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKH 241
Query: 90 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
DA A M+G + G+ + V A++ ++ +E++ +
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRK 279
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 31 GRGRDLPT-SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G G D S+ V N+ +D + +R F + G + I + D TG+P+G+GF+++ D
Sbjct: 10 GVGNDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDI 69
Query: 90 ADAADAKYHMDGYLLLGRELTV 111
A A +++GY L GR L V
Sbjct: 70 QTAEVAIRNLNGYELSGRILRV 91
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V L D + L F ++G++ ++ + +D T RGFGFV + + DA DA M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRAR 127
+G + GR++ V + K S+ R+R
Sbjct: 68 NGKSVDGRQIRV----DQAGKSSDNRSR 91
>UNIPROTKB|B4DJK0 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AL157789
UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5 EMBL:AL355837
EMBL:AK296113 IPI:IPI01025047 ProteinModelPortal:B4DJK0 SMR:B4DJK0
STRING:B4DJK0 Ensembl:ENST00000555349 ArrayExpress:B4DJK0
Bgee:B4DJK0 Uniprot:B4DJK0
Length = 124
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/91 (34%), Positives = 45/91 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ + L R +D+ F +GR++DI L R GFGFV++ DP DA DA Y +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--------GFGFVEFEDPRDADDAVYEL 57
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERF 130
DG L +T+ E R + R R R+
Sbjct: 58 DGKELCSERVTI---EHARARSRGGRGRGRY 85
>UNIPROTKB|B4DUA4 [details] [associations]
symbol:SRSF5 "cDNA FLJ57437, highly similar to Splicing
factor, arginine/serine-rich 5" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:AL157789 UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 EMBL:AK300560 IPI:IPI01009006
ProteinModelPortal:B4DUA4 SMR:B4DUA4 STRING:B4DUA4
Ensembl:ENST00000451983 Ensembl:ENST00000553369
Ensembl:ENST00000554021 UCSC:uc021rvj.1 ArrayExpress:B4DUA4
Bgee:B4DUA4 Uniprot:B4DUA4
Length = 138
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/91 (34%), Positives = 45/91 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ + L R +D+ F +GR++DI L R GFGFV++ DP DA DA Y +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--------GFGFVEFEDPRDADDAVYEL 57
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERF 130
DG L +T+ E R + R R R+
Sbjct: 58 DGKELCSERVTI---EHARARSRGGRGRGRY 85
>UNIPROTKB|G3V5K8 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0051726 "regulation
of cell cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0051726 EMBL:AL157789 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 ProteinModelPortal:G3V5K8 SMR:G3V5K8
Ensembl:ENST00000553548 ArrayExpress:G3V5K8 Bgee:G3V5K8
Uniprot:G3V5K8
Length = 99
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/91 (34%), Positives = 45/91 (49%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ + L R +D+ F +GR++DI L R GFGFV++ DP DA DA Y +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--------GFGFVEFEDPRDADDAVYEL 57
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRARERF 130
DG L +T+ E R + R R R+
Sbjct: 58 DGKELCSERVTI---EHARARSRGGRGRGRY 85
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V L D + L F ++G++ ++ + +D T RGFGFV + + DA DA M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRAR 127
+G + GR++ V + K S+ R+R
Sbjct: 68 NGKSVDGRQIRV----DQAGKSSDNRSR 91
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V L D + L F ++G++ ++ + +D T RGFGFV + + DA DA M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRAR 127
+G + GR++ V + K S+ R+R
Sbjct: 68 NGKSVDGRQIRV----DQAGKSSDNRSR 91
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V L D + L F ++G++ ++ + +D T RGFGFV + + DA DA M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRAR 127
+G + GR++ V + K S+ R+R
Sbjct: 68 NGKSVDGRQIRV----DQAGKSSDNRSR 91
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V L D + L F ++G++ ++ + +D T RGFGFV + + DA DA M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRAR 127
+G + GR++ V + K S+ R+R
Sbjct: 68 NGKSVDGRQIRV----DQAGKSSDNRSR 91
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V L D + L F ++G++ ++ + +D T RGFGFV + + DA DA M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRAR 127
+G + GR++ V + K S+ R+R
Sbjct: 68 NGKSVDGRQIRV----DQAGKSSDNRSR 91
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V L D + L F ++G++ ++ + +D T RGFGFV + + DA DA M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRAR 127
+G + GR++ V + K S+ R+R
Sbjct: 68 NGKSVDGRQIRV----DQAGKSSDNRSR 91
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V L D + L F ++G++ ++ + +D T RGFGFV + + DA DA M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRAR 127
+G + GR++ V + K S+ R+R
Sbjct: 68 NGKSVDGRQIRV----DQAGKSSDNRSR 91
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/92 (33%), Positives = 42/92 (45%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97
T L V L + LR F QFG L + + D P+GF F++Y +A A
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 98 HMDGYLLLGRELTVVFAEENRKKPSEMRARER 129
M G L GR V+F EE + + RA+ R
Sbjct: 137 GMHGKFLDGR---VIFVEEAKTRSDMSRAKPR 165
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 35/96 (36%), Positives = 43/96 (44%)
Query: 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPA 90
G R + T L + L LR F FG + D + D TG RGFGFV + D
Sbjct: 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEG 87
Query: 91 DAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRA 126
A A MDG L GR + V A + +PS RA
Sbjct: 88 AATAAISEMDGKELNGRHIRVNPAND---RPSAPRA 120
>WB|WBGene00016808 [details] [associations]
symbol:C50D2.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003723 EMBL:FO080633 eggNOG:COG0724
HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF RefSeq:NP_493659.3
ProteinModelPortal:Q8ITY4 SMR:Q8ITY4 STRING:Q8ITY4 PaxDb:Q8ITY4
EnsemblMetazoa:C50D2.5 GeneID:173394 KEGG:cel:CELE_C50D2.5
UCSC:C50D2.5 CTD:173394 WormBase:C50D2.5
GeneTree:ENSGT00390000005908 InParanoid:Q8ITY4 NextBio:879467
Uniprot:Q8ITY4
Length = 138
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 33/104 (31%), Positives = 51/104 (49%)
Query: 32 RGRDLPTS----LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 87
RG LP L ++NL + E++ FG+FG ++ I + T E RG FV Y
Sbjct: 9 RGAKLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGN---TAETRGTAFVVYE 65
Query: 88 DPADAADAKYHMDGYLLLGRELTVVFAEENR--KKPSEMRARER 129
D DA A H+ GY + R L V++ + + K+ +AR +
Sbjct: 66 DIFDAKTACEHLSGYNVSNRYLVVLYYQATKAWKRMDTEKARTK 109
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 122 (48.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/98 (28%), Positives = 55/98 (56%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
G + ++ T++ ++N + E+LR F QFG+ + + RD +G+ +GFGFV Y
Sbjct: 184 GAKAKEF-TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKH 241
Query: 90 ADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 127
DA A M+G + G+ + V A++ ++ +E++ +
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRK 279
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V L D + L F ++G++ ++ + +D T RGFGFV + + DA DA M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 DGYLLLGRELTVVFAEENRKKPSEMRAR 127
+G + GR++ V + K S+ R+R
Sbjct: 68 NGKSVDGRQIRV----DQAGKSSDNRSR 91
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L + L D + L F ++G + ++++ R+ T RGFGFV + +P DA DA M
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 100 DGYLLLGRELTV 111
+G + GR + V
Sbjct: 67 NGKSVDGRTIRV 78
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 119 (46.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPAD 91
+G P L V +L + + LRG F FGR++ I L D TG +G+GF+ + D
Sbjct: 244 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSEC 303
Query: 92 AADAKYHMDGYLLLGRELTV 111
A A ++G+ L GR + V
Sbjct: 304 AKKALEQLNGFELAGRPMKV 323
>FB|FBgn0036018 [details] [associations]
symbol:CG3335 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0004386 eggNOG:COG0724 HSSP:Q61474 EMBL:AY113652
ProteinModelPortal:Q8MYR4 SMR:Q8MYR4 STRING:Q8MYR4 PaxDb:Q8MYR4
PRIDE:Q8MYR4 FlyBase:FBgn0036018 HOGENOM:HOG000132447
InParanoid:Q8MYR4 OrthoDB:EOG4M63ZP ArrayExpress:Q8MYR4 Bgee:Q8MYR4
Uniprot:Q8MYR4
Length = 918
Score = 123 (48.4 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ RNL + EDLR F QFG + ++ LP D T + +GFG V Y+ P A A +
Sbjct: 366 IFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFNTL 425
Query: 100 DGYLLLGRELTVVFAEENRKKPSE 123
DG GR L ++ +++ K P E
Sbjct: 426 DGTDFHGRLLHLLPSKDIEKNPKE 449
Score = 121 (47.7 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 32/94 (34%), Positives = 50/94 (53%)
Query: 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEP--RGFGFVQYIDPADAADA 95
T +LVRN+ + ++R F FG L+ + +P+ TGE RGFGFV Y+ A+A A
Sbjct: 785 TKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFVDYMSKAEAKRA 844
Query: 96 KYHMDGYL-LLGRELTVVF-AEENRKKPSEMRAR 127
+ L GR L + + A ++ + E+R R
Sbjct: 845 FDALSASTHLYGRRLVLEWSANDDNQDVEELRKR 878
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 122 (48.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 94
D L++RNL C +DL+ F QFG + ++ +PR G+ RGFGFVQ+ + +A
Sbjct: 111 DKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKP-DGKMRGFGFVQFKNLLEAGK 169
Query: 95 AKYHMDGYLLLGRELTVVFA 114
A M+ + GR + V +A
Sbjct: 170 ALKGMNMKEIKGRTVAVDWA 189
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 120 (47.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 30 GGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP 89
GG G P L V +L + + LRG F FG+++ I L D TG +G+GF+ + D
Sbjct: 259 GGAG---PMRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADA 315
Query: 90 ADAADAKYHMDGYLLLGRELTV 111
A A ++G+ L GR + V
Sbjct: 316 ECAKKALEQLNGFELAGRPMKV 337
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 116 (45.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID--P 89
+G++ P + V L D E ++ FG FG +++I LP D T E RGF F+ Y D P
Sbjct: 109 KGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEP 168
Query: 90 ADAA-DAKYHMDG 101
+++YH G
Sbjct: 169 VKKLLESRYHQIG 181
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 116 (45.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID--P 89
+G++ P + V L D E ++ FG FG +++I LP D T E RGF F+ Y D P
Sbjct: 108 KGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEP 167
Query: 90 ADAA-DAKYHMDG 101
+++YH G
Sbjct: 168 VKKLLESRYHQIG 180
>FB|FBgn0035692 [details] [associations]
symbol:CG13298 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0048812 "neuron projection morphogenesis"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0005686 "U2 snRNP"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0007052
GO:GO:0022008 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 KO:K12833
OMA:YQSTKAF GeneTree:ENSGT00390000005908 EMBL:AY089603
RefSeq:NP_648037.1 UniGene:Dm.1519 ProteinModelPortal:Q9VRV7
SMR:Q9VRV7 DIP:DIP-21174N IntAct:Q9VRV7 MINT:MINT-921416
STRING:Q9VRV7 PaxDb:Q9VRV7 PRIDE:Q9VRV7 EnsemblMetazoa:FBtr0077015
GeneID:38720 KEGG:dme:Dmel_CG13298 UCSC:CG13298-RA
FlyBase:FBgn0035692 InParanoid:Q9VRV7 OrthoDB:EOG4DV43Q
PhylomeDB:Q9VRV7 GenomeRNAi:38720 NextBio:810039 Bgee:Q9VRV7
GermOnline:CG13298 Uniprot:Q9VRV7
Length = 121
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L VRNL + +++ FG+FG ++ I + T E RG FV Y D DA +A H+
Sbjct: 17 LYVRNLPYKITSDEMYDIFGKFGAIRQIRVGN---TPETRGTAFVVYEDIFDAKNACDHL 73
Query: 100 DGYLLLGRELTVVFAEENR 118
G+ + R L V++ + N+
Sbjct: 74 SGFNVCNRYLVVLYYQSNK 92
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V L + + L F FG + ++ + +D T RGFGF+ + +P A+DA M
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 100 DGYLLLGRELTVVFAEENRK 119
+G L GR++ V A ++ +
Sbjct: 68 NGESLDGRQIRVDHAGKSAR 87
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
L V L + + L F FG + ++ + +D T RGFGF+ + +P A+DA M
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 100 DGYLLLGRELTVVFAEENRK 119
+G L GR++ V A ++ +
Sbjct: 68 NGESLDGRQIRVDHAGKSAR 87
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 116 (45.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99
+ V N+ + E + F + G++ + L D TG+P+GFGF +Y D AA A ++
Sbjct: 10 VFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAVRNL 69
Query: 100 DGYLLLGRELTVVFAEENRKKPS 122
+ ++GR+L V F+ E KPS
Sbjct: 70 NDTEIMGRKLRVDFSNE---KPS 89
>UNIPROTKB|G3N117 [details] [associations]
symbol:LOC508834 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 EMBL:DAAA02019492
Ensembl:ENSBTAT00000063470 OMA:QIMATAV Uniprot:G3N117
Length = 272
Score = 115 (45.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 31/96 (32%), Positives = 48/96 (50%)
Query: 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEP-RGFGFVQYIDPADAADA 95
PT + V L E +R F FGR++ I L RD P +G +V++ +P +AA A
Sbjct: 130 PTKVHVARLTRKVTREHIREIFSTFGRVRKIDLRRDRMRAHPSQGHAYVEFENPEEAAKA 189
Query: 96 KYHMDGYLLLGREL--TVVFAEENRKKPSEMRARER 129
HMDG + G+++ T V A + P + + R
Sbjct: 190 LKHMDGGQIDGQQIMATAVLAPWPQPPPRRLSSLRR 225
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID--P 89
+G++ P + V L D E ++ FG FG +++I LP D T E RGF F+ Y D P
Sbjct: 130 KGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEP 189
Query: 90 ADAA-DAKYHMDG 101
+++YH G
Sbjct: 190 VKKLLESRYHQIG 202
Score = 93 (37.8 bits), Expect = 0.00060, P = 0.00060
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 37 PTS---LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA- 92
PTS + + L D +DL +FG + D + D TG RGFGFV + D A
Sbjct: 47 PTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 106
Query: 93 --ADAKYH-MDGYLLLGRELTVVFAEENRKK 120
+ K H +DG L+ + + +E KK
Sbjct: 107 KVLELKEHKLDGKLIDPKRAKALKGKEPPKK 137
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID--P 89
+G++ P + V L D E ++ FG FG +++I LP D T E RGF F+ Y D P
Sbjct: 130 KGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEP 189
Query: 90 ADAA-DAKYHMDG 101
+++YH G
Sbjct: 190 VKKLLESRYHQIG 202
Score = 93 (37.8 bits), Expect = 0.00060, P = 0.00060
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 37 PTS---LLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA- 92
PTS + + L D +DL +FG + D + D TG RGFGFV + D A
Sbjct: 47 PTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 106
Query: 93 --ADAKYH-MDGYLLLGRELTVVFAEENRKK 120
+ K H +DG L+ + + +E KK
Sbjct: 107 KVLELKEHKLDGKLIDPKRAKALKGKEPPKK 137
WARNING: HSPs involving 674 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.146 0.456 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 210 104 0.00091 102 3 11 22 0.40 30
29 0.50 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 924
No. of states in DFA: 503 (54 KB)
Total size of DFA: 109 KB (2076 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.84u 0.16s 12.00t Elapsed: 00:00:00
Total cpu time: 11.86u 0.16s 12.02t Elapsed: 00:00:00
Start: Fri May 10 13:45:30 2013 End: Fri May 10 13:45:30 2013
WARNINGS ISSUED: 2