Query 028313
Match_columns 210
No_of_seqs 305 out of 2482
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 15:40:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 2.6E-24 8.8E-29 149.5 11.5 82 35-116 17-98 (99)
2 3pgw_S U1-70K; protein-RNA com 99.9 2.3E-23 8E-28 179.8 18.1 85 35-119 100-184 (437)
3 3s8s_A Histone-lysine N-methyl 99.9 6.6E-23 2.3E-27 145.1 12.4 83 35-117 4-86 (110)
4 2cq0_A Eukaryotic translation 99.9 1.5E-22 5E-27 141.3 12.6 86 33-118 11-96 (103)
5 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.3E-22 4.4E-27 141.3 11.7 87 33-119 8-94 (102)
6 2lxi_A RNA-binding protein 10; 99.9 2.1E-23 7.3E-28 142.7 7.4 84 37-120 1-86 (91)
7 2e5h_A Zinc finger CCHC-type a 99.9 3E-22 1E-26 137.4 13.1 84 32-115 11-94 (94)
8 2cqc_A Arginine/serine-rich sp 99.9 2.4E-22 8.1E-27 138.0 12.2 84 33-116 11-94 (95)
9 1whw_A Hypothetical protein ri 99.9 2.2E-22 7.7E-27 139.3 12.0 85 34-118 5-89 (99)
10 2dgo_A Cytotoxic granule-assoc 99.9 3.9E-22 1.3E-26 141.9 13.4 87 33-119 11-97 (115)
11 1x5u_A Splicing factor 3B subu 99.9 1.9E-22 6.6E-27 141.1 11.5 86 33-118 11-96 (105)
12 2dgs_A DAZ-associated protein 99.9 3.3E-22 1.1E-26 138.5 12.4 86 33-119 6-91 (99)
13 1x5s_A Cold-inducible RNA-bind 99.9 1.5E-22 5.3E-27 140.9 10.6 86 33-118 8-93 (102)
14 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.4E-22 8.2E-27 135.8 11.1 83 35-117 4-86 (87)
15 2lkz_A RNA-binding protein 5; 99.9 9.3E-23 3.2E-27 140.5 9.0 86 31-116 3-94 (95)
16 2cpz_A CUG triplet repeat RNA- 99.9 7E-22 2.4E-26 140.6 13.8 86 33-118 21-106 (115)
17 1x4c_A Splicing factor, argini 99.9 7.4E-22 2.5E-26 139.1 13.7 77 33-116 11-92 (108)
18 3md1_A Nuclear and cytoplasmic 99.9 3.9E-22 1.3E-26 133.6 11.7 82 37-118 1-82 (83)
19 2do4_A Squamous cell carcinoma 99.9 9.3E-22 3.2E-26 136.5 13.9 84 34-118 14-97 (100)
20 2cqd_A RNA-binding region cont 99.9 1.2E-21 4E-26 139.6 14.5 87 31-118 11-97 (116)
21 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2.5E-22 8.5E-27 135.2 10.4 82 34-115 4-85 (85)
22 3ulh_A THO complex subunit 4; 99.9 3.7E-22 1.2E-26 140.2 11.6 84 31-115 23-106 (107)
23 1x4h_A RNA-binding protein 28; 99.9 6.9E-22 2.4E-26 139.6 13.0 86 33-118 11-102 (111)
24 2dnm_A SRP46 splicing factor; 99.9 2E-22 6.8E-27 140.7 10.1 86 33-118 9-94 (103)
25 2dnz_A Probable RNA-binding pr 99.9 4E-22 1.4E-26 137.0 11.4 84 35-118 3-86 (95)
26 2d9p_A Polyadenylate-binding p 99.9 6E-22 2.1E-26 138.2 12.3 84 33-118 11-94 (103)
27 2dnh_A Bruno-like 5, RNA bindi 99.9 9.5E-22 3.2E-26 137.6 12.9 85 34-119 12-99 (105)
28 2cpe_A RNA-binding protein EWS 99.9 6.6E-22 2.3E-26 140.2 12.1 87 32-118 10-104 (113)
29 2cph_A RNA binding motif prote 99.9 8E-22 2.7E-26 138.4 12.1 86 33-118 11-98 (107)
30 2fy1_A RNA-binding motif prote 99.9 7.4E-22 2.5E-26 140.9 12.0 84 34-118 4-87 (116)
31 1h2v_Z 20 kDa nuclear CAP bind 99.9 8.6E-22 2.9E-26 147.5 12.7 85 34-118 36-120 (156)
32 1x5t_A Splicing factor 3B subu 99.9 4.4E-22 1.5E-26 137.0 10.2 84 35-118 3-87 (96)
33 2x1f_A MRNA 3'-END-processing 99.9 7E-22 2.4E-26 136.2 11.2 84 37-120 2-85 (96)
34 2cq3_A RNA-binding protein 9; 99.9 2.5E-21 8.6E-26 135.0 14.1 86 32-119 10-95 (103)
35 2dng_A Eukaryotic translation 99.9 1.9E-21 6.4E-26 135.7 13.2 84 33-118 11-94 (103)
36 3ex7_B RNA-binding protein 8A; 99.9 3.4E-22 1.2E-26 144.4 9.7 86 34-119 19-104 (126)
37 3beg_B Splicing factor, argini 99.9 2.9E-22 1E-26 142.8 9.0 71 34-111 13-83 (115)
38 1wi8_A EIF-4B, eukaryotic tran 99.9 1.4E-21 4.8E-26 136.6 12.3 83 34-118 12-95 (104)
39 2do0_A HnRNP M, heterogeneous 99.9 2.9E-21 1E-25 137.0 14.1 86 32-118 10-95 (114)
40 1p27_B RNA-binding protein 8A; 99.9 6.7E-22 2.3E-26 138.6 10.5 84 35-118 21-104 (106)
41 1u6f_A Tcubp1, RNA-binding pro 99.9 1.5E-21 5.3E-26 143.3 12.6 87 32-118 37-123 (139)
42 1oo0_B CG8781-PA, drosophila Y 99.9 1.2E-21 4E-26 138.3 11.4 85 34-118 23-107 (110)
43 2div_A TRNA selenocysteine ass 99.9 7.7E-22 2.6E-26 136.6 10.1 85 34-118 6-95 (99)
44 2cqi_A Nucleolysin TIAR; RNA r 99.9 3.4E-21 1.2E-25 134.4 13.4 85 32-118 10-94 (103)
45 2cpf_A RNA binding motif prote 99.9 9E-22 3.1E-26 136.0 10.3 84 35-118 3-89 (98)
46 2kxn_B Transformer-2 protein h 99.9 6.1E-22 2.1E-26 144.0 9.8 86 33-118 42-127 (129)
47 2la6_A RNA-binding protein FUS 99.9 1.6E-21 5.5E-26 135.1 11.4 82 34-115 10-99 (99)
48 1wel_A RNA-binding protein 12; 99.9 3.6E-22 1.2E-26 144.1 8.4 83 34-117 22-104 (124)
49 4f25_A Polyadenylate-binding p 99.9 1.1E-21 3.9E-26 139.7 10.9 81 37-119 5-85 (115)
50 2dgu_A Heterogeneous nuclear r 99.9 3.4E-21 1.2E-25 134.4 12.7 80 33-120 7-86 (103)
51 2cqp_A RNA-binding protein 12; 99.9 9.6E-22 3.3E-26 135.9 9.7 84 34-117 12-95 (98)
52 3p5t_L Cleavage and polyadenyl 99.9 1.6E-22 5.3E-27 137.9 5.5 82 38-119 2-85 (90)
53 4a8x_A RNA-binding protein wit 99.9 1.2E-21 4.1E-26 132.6 9.8 83 36-118 3-86 (88)
54 1x4a_A Splicing factor, argini 99.9 6.4E-21 2.2E-25 134.3 13.8 84 32-118 17-100 (109)
55 2dgp_A Bruno-like 4, RNA bindi 99.9 1E-21 3.5E-26 137.6 9.6 86 33-118 9-97 (106)
56 2khc_A Testis-specific RNP-typ 99.9 2E-21 6.8E-26 138.8 11.2 83 33-115 36-118 (118)
57 2ywk_A Putative RNA-binding pr 99.9 1.5E-21 5.3E-26 134.0 10.1 83 33-116 12-94 (95)
58 2dh8_A DAZ-associated protein 99.9 1.7E-21 5.7E-26 136.4 10.1 87 32-119 11-97 (105)
59 2ek1_A RNA-binding protein 12; 99.9 5.7E-22 1.9E-26 136.2 7.5 82 34-115 12-93 (95)
60 3ns6_A Eukaryotic translation 99.9 2.7E-22 9.2E-27 139.5 5.6 83 35-117 4-93 (100)
61 2jrs_A RNA-binding protein 39; 99.9 1.8E-21 6.1E-26 137.2 9.8 84 34-117 23-106 (108)
62 1rk8_A CG8781-PA, CG8781-PA pr 99.9 3.3E-21 1.1E-25 145.7 11.9 85 34-118 69-153 (165)
63 2dgv_A HnRNP M, heterogeneous 99.9 2.6E-21 9E-26 132.1 10.2 83 34-118 5-87 (92)
64 2dgx_A KIAA0430 protein; RRM d 99.9 4.5E-21 1.5E-25 132.2 11.3 81 35-118 7-91 (96)
65 2cq4_A RNA binding motif prote 99.9 1.8E-21 6.1E-26 138.3 9.5 83 34-117 22-104 (114)
66 2dhg_A TRNA selenocysteine ass 99.9 2E-21 7E-26 135.6 9.6 84 34-118 6-91 (104)
67 2kt5_A RNA and export factor-b 99.9 1.9E-20 6.5E-25 134.9 14.9 87 32-119 30-116 (124)
68 3s7r_A Heterogeneous nuclear r 99.9 7.5E-21 2.6E-25 128.5 12.0 81 33-114 7-87 (87)
69 2cqg_A TDP-43, TAR DNA-binding 99.9 1.3E-20 4.4E-25 131.4 13.6 85 32-118 10-94 (103)
70 3n9u_C Cleavage and polyadenyl 99.9 2.3E-21 7.9E-26 145.4 10.4 84 35-118 53-138 (156)
71 2dgw_A Probable RNA-binding pr 99.9 1.2E-20 4.2E-25 128.6 13.0 82 34-118 7-88 (91)
72 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 7.1E-21 2.4E-25 139.6 12.5 83 32-114 58-140 (140)
73 3ucg_A Polyadenylate-binding p 99.9 5.3E-21 1.8E-25 129.7 10.7 80 37-117 6-85 (89)
74 2cpi_A CCR4-NOT transcription 99.9 6.3E-21 2.2E-25 134.9 11.5 85 34-118 12-102 (111)
75 2cpy_A RNA-binding protein 12; 99.9 3.1E-21 1.1E-25 137.2 9.9 84 33-118 11-95 (114)
76 1sjq_A Polypyrimidine tract-bi 99.9 2.2E-21 7.5E-26 135.5 8.7 81 34-120 13-95 (105)
77 2f3j_A RNA and export factor b 99.8 7.8E-21 2.7E-25 145.3 12.4 85 33-118 84-168 (177)
78 2rs2_A Musashi-1, RNA-binding 99.8 8E-21 2.7E-25 134.1 11.3 86 33-119 21-106 (109)
79 2cq1_A PTB-like protein L; RRM 99.8 1.8E-20 6E-25 130.5 12.6 81 34-120 12-94 (101)
80 1p1t_A Cleavage stimulation fa 99.8 1.1E-21 3.6E-26 137.0 6.2 84 35-118 6-89 (104)
81 1wg5_A Heterogeneous nuclear r 99.8 1.2E-20 4.1E-25 132.0 11.5 83 33-117 11-94 (104)
82 1why_A Hypothetical protein ri 99.8 1.4E-20 4.9E-25 129.8 11.6 80 33-118 13-94 (97)
83 2fc9_A NCL protein; structure 99.8 2.8E-20 9.5E-25 129.2 12.8 82 33-118 11-92 (101)
84 2err_A Ataxin-2-binding protei 99.8 7.7E-21 2.6E-25 134.1 10.1 87 29-117 21-107 (109)
85 2m2b_A RNA-binding protein 10; 99.8 1.7E-21 6E-26 141.8 6.8 85 33-118 19-109 (131)
86 1x4b_A Heterogeneous nuclear r 99.8 1.4E-20 4.9E-25 134.0 11.1 83 35-118 25-107 (116)
87 1s79_A Lupus LA protein; RRM, 99.8 5.5E-21 1.9E-25 133.6 8.7 81 34-116 8-88 (103)
88 2dis_A Unnamed protein product 99.8 1.3E-20 4.5E-25 132.6 10.8 85 35-119 6-94 (109)
89 2db1_A Heterogeneous nuclear r 99.8 1.3E-20 4.4E-25 134.9 10.8 84 32-117 12-98 (118)
90 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.7E-21 9.1E-26 134.4 7.0 83 33-117 15-98 (100)
91 2dgt_A RNA-binding protein 30; 99.8 2.1E-20 7.3E-25 127.7 11.3 77 34-118 7-83 (92)
92 1x4e_A RNA binding motif, sing 99.8 1.4E-21 4.7E-26 131.6 5.3 80 35-114 3-82 (85)
93 2kn4_A Immunoglobulin G-bindin 99.8 2E-20 6.7E-25 140.2 12.0 85 34-118 67-151 (158)
94 1x4d_A Matrin 3; structural ge 99.8 9.3E-21 3.2E-25 132.0 9.4 79 34-118 12-93 (102)
95 2dnq_A RNA-binding protein 4B; 99.8 1.3E-20 4.4E-25 128.3 10.0 77 34-118 5-81 (90)
96 1wez_A HnRNP H', FTP-3, hetero 99.8 1.4E-20 4.8E-25 131.3 10.2 83 33-118 11-93 (102)
97 1x5o_A RNA binding motif, sing 99.8 3.2E-20 1.1E-24 131.7 12.2 85 32-117 20-112 (114)
98 2mss_A Protein (musashi1); RNA 99.8 4.2E-21 1.4E-25 126.2 6.9 75 39-114 1-75 (75)
99 3r27_A HnRNP L, heterogeneous 99.8 1.7E-20 5.7E-25 129.8 10.1 79 34-118 18-98 (100)
100 2lea_A Serine/arginine-rich sp 99.8 3.1E-21 1E-25 141.3 6.8 86 33-118 43-128 (135)
101 2cpd_A Apobec-1 stimulating pr 99.8 6.3E-20 2.2E-24 127.0 13.2 79 32-118 10-90 (99)
102 2ytc_A PRE-mRNA-splicing facto 99.8 3E-20 1E-24 124.9 11.0 77 33-115 8-85 (85)
103 1wex_A Hypothetical protein (r 99.8 2.1E-20 7.3E-25 130.8 10.6 80 34-119 12-93 (104)
104 2dnp_A RNA-binding protein 14; 99.8 2.4E-20 8.1E-25 126.9 10.5 77 34-118 6-82 (90)
105 2wbr_A GW182, gawky, LD47780P; 99.8 2.1E-20 7.2E-25 125.4 9.9 74 36-115 6-79 (89)
106 2fc8_A NCL protein; structure 99.8 4.6E-20 1.6E-24 128.3 12.1 82 34-118 12-93 (102)
107 2jwn_A Embryonic polyadenylate 99.8 2E-20 6.8E-25 134.7 10.6 81 36-117 35-115 (124)
108 2cpj_A Non-POU domain-containi 99.8 2.6E-20 8.7E-25 129.0 10.4 79 34-118 12-90 (99)
109 2ad9_A Polypyrimidine tract-bi 99.8 1.5E-20 5.2E-25 134.3 9.5 81 34-120 28-110 (119)
110 2e5j_A Methenyltetrahydrofolat 99.8 1.8E-20 6.1E-25 129.3 9.5 81 33-118 15-95 (97)
111 2hgl_A HNRPF protein, heteroge 99.8 1.3E-20 4.5E-25 137.9 9.0 84 31-116 38-124 (136)
112 3q2s_C Cleavage and polyadenyl 99.8 1E-20 3.5E-25 150.3 8.7 83 36-118 67-151 (229)
113 1uaw_A Mouse-musashi-1; RNP-ty 99.8 6.6E-21 2.3E-25 125.7 6.3 76 38-114 1-76 (77)
114 2jvr_A Nucleolar protein 3; RN 99.8 1.7E-20 5.8E-25 132.7 8.8 81 33-117 24-105 (111)
115 2ki2_A SS-DNA binding protein 99.8 2.8E-21 9.5E-26 131.5 4.2 81 38-119 2-82 (90)
116 2xnq_A Nuclear polyadenylated 99.8 7.1E-20 2.4E-24 126.5 11.1 77 33-117 18-95 (97)
117 2nlw_A Eukaryotic translation 99.8 2.4E-20 8.2E-25 130.7 8.7 81 35-117 13-100 (105)
118 2dnn_A RNA-binding protein 12; 99.8 5.6E-20 1.9E-24 129.7 10.0 79 35-116 14-92 (109)
119 1x4g_A Nucleolysin TIAR; struc 99.8 6.2E-20 2.1E-24 129.3 10.3 79 34-118 22-100 (109)
120 2jvo_A Nucleolar protein 3; nu 99.8 5.7E-20 2E-24 129.5 9.8 78 33-118 27-104 (108)
121 2a3j_A U1 small nuclear ribonu 99.8 4.4E-20 1.5E-24 133.7 9.4 83 33-118 25-111 (127)
122 2cpx_A Hypothetical protein FL 99.8 6.3E-21 2.2E-25 135.5 4.8 81 34-118 22-106 (115)
123 1fj7_A Nucleolin RBD1, protein 99.8 4.7E-21 1.6E-25 133.1 4.0 83 34-118 14-96 (101)
124 1nu4_A U1A RNA binding domain; 99.8 2.3E-20 7.9E-25 128.6 6.6 82 34-118 5-90 (97)
125 2lmi_A GRSF-1, G-rich sequence 99.8 2.1E-20 7.3E-25 131.4 6.6 83 33-117 7-92 (107)
126 2kvi_A Nuclear polyadenylated 99.8 5.2E-20 1.8E-24 126.8 8.2 77 34-118 7-84 (96)
127 2la4_A Nuclear and cytoplasmic 99.8 6.9E-20 2.3E-24 127.2 8.6 77 34-116 24-100 (101)
128 2cqh_A IGF-II mRNA-binding pro 99.8 8.7E-20 3E-24 124.8 8.7 77 35-118 6-84 (93)
129 2e44_A Insulin-like growth fac 99.8 1.4E-19 4.9E-24 124.4 9.7 80 34-117 12-92 (96)
130 1x4f_A Matrin 3; structural ge 99.8 7.2E-20 2.5E-24 129.4 8.2 79 34-118 22-103 (112)
131 2e5g_A U6 snRNA-specific termi 99.8 2.3E-19 7.9E-24 123.0 10.4 78 35-118 6-83 (94)
132 2krb_A Eukaryotic translation 99.8 4E-20 1.4E-24 123.4 6.4 73 37-111 1-80 (81)
133 2hvz_A Splicing factor, argini 99.8 4.5E-20 1.5E-24 128.2 6.8 76 38-118 1-76 (101)
134 1fjc_A Nucleolin RBD2, protein 99.8 1.2E-19 3.9E-24 124.9 8.7 80 34-118 13-92 (96)
135 1iqt_A AUF1, heterogeneous nuc 99.8 2.3E-20 8E-25 122.5 4.7 75 39-114 1-75 (75)
136 3lqv_A PRE-mRNA branch site pr 99.8 1.8E-19 6E-24 128.0 9.5 80 35-117 6-85 (115)
137 1whx_A Hypothetical protein ri 99.8 1.1E-19 3.6E-24 128.7 8.3 77 36-118 9-85 (111)
138 2lcw_A RNA-binding protein FUS 99.7 3.3E-21 1.1E-25 137.3 0.0 85 34-118 4-96 (116)
139 1x5p_A Negative elongation fac 99.8 1.3E-18 4.6E-23 119.9 13.2 77 34-118 12-88 (97)
140 4f02_A Polyadenylate-binding p 99.8 4.2E-19 1.4E-23 139.3 11.8 83 35-117 13-95 (213)
141 1wf1_A RNA-binding protein RAL 99.8 2.6E-19 9E-24 126.2 9.5 75 35-117 25-100 (110)
142 3egn_A RNA-binding protein 40; 99.8 4.8E-20 1.6E-24 136.0 5.9 87 34-120 42-133 (143)
143 2dha_A FLJ20171 protein; RRM d 99.8 1.9E-19 6.6E-24 129.5 8.6 82 34-117 20-105 (123)
144 2hgn_A Heterogeneous nuclear r 99.8 4.9E-20 1.7E-24 135.4 4.7 83 33-118 42-124 (139)
145 2xs2_A Deleted in azoospermia- 99.8 1.5E-19 5.2E-24 125.7 7.0 81 35-118 7-87 (102)
146 3md3_A Nuclear and cytoplasmic 99.8 1.1E-18 3.9E-23 130.5 12.0 82 34-115 84-165 (166)
147 2j8a_A Histone-lysine N-methyl 99.8 4.5E-19 1.5E-23 126.8 9.1 80 37-116 2-95 (136)
148 2cq2_A Hypothetical protein LO 99.8 3.3E-19 1.1E-23 126.2 8.2 79 34-118 22-107 (114)
149 2hgm_A HNRPF protein, heteroge 99.8 2.7E-19 9.2E-24 129.2 7.7 81 33-116 38-120 (126)
150 1fxl_A Paraneoplastic encephal 99.8 1.4E-18 4.8E-23 130.1 11.9 82 37-118 2-83 (167)
151 2i2y_A Fusion protein consists 99.8 6.2E-19 2.1E-23 131.0 9.6 81 33-118 69-149 (150)
152 3zzy_A Polypyrimidine tract-bi 99.8 1.5E-18 5E-23 125.6 11.2 78 36-118 27-107 (130)
153 1wg1_A KIAA1579 protein, homol 99.8 9.2E-19 3.1E-23 118.6 9.6 75 36-117 4-78 (88)
154 1b7f_A Protein (SXL-lethal pro 99.8 9.8E-19 3.3E-23 131.3 10.2 83 36-118 2-84 (168)
155 2dnl_A Cytoplasmic polyadenyla 99.8 1.3E-18 4.5E-23 123.5 9.8 80 34-116 5-87 (114)
156 2e5i_A Heterogeneous nuclear r 99.8 2.3E-18 7.9E-23 123.8 11.1 74 39-118 27-103 (124)
157 2qfj_A FBP-interacting repress 99.8 1.8E-18 6.1E-23 135.1 11.4 84 35-118 123-206 (216)
158 3d2w_A TAR DNA-binding protein 99.8 2.3E-18 7.8E-23 117.0 9.7 77 33-118 7-85 (89)
159 2yh0_A Splicing factor U2AF 65 99.8 3.1E-18 1.1E-22 132.0 11.4 85 34-118 111-195 (198)
160 2g4b_A Splicing factor U2AF 65 99.8 3.2E-18 1.1E-22 129.1 10.7 81 35-115 92-172 (172)
161 1sjr_A Polypyrimidine tract-bi 99.8 1.5E-18 5.1E-23 130.1 8.7 80 35-118 44-125 (164)
162 1l3k_A Heterogeneous nuclear r 99.8 3.8E-18 1.3E-22 131.2 10.9 84 34-118 10-93 (196)
163 1l3k_A Heterogeneous nuclear r 99.8 5.2E-18 1.8E-22 130.5 11.6 84 35-119 102-185 (196)
164 2diu_A KIAA0430 protein; struc 99.8 2.3E-18 7.9E-23 116.6 8.2 74 36-119 7-86 (96)
165 3tyt_A Heterogeneous nuclear r 99.8 4.7E-18 1.6E-22 132.8 10.7 78 36-118 3-81 (205)
166 2cjk_A Nuclear polyadenylated 99.8 1.9E-18 6.6E-23 129.6 8.1 81 36-117 86-166 (167)
167 4f02_A Polyadenylate-binding p 99.8 2E-18 6.7E-23 135.4 8.4 81 36-118 102-182 (213)
168 2hzc_A Splicing factor U2AF 65 99.7 4.5E-18 1.5E-22 114.6 8.2 72 35-113 4-86 (87)
169 2bz2_A Negative elongation fac 99.7 5.8E-18 2E-22 121.5 9.1 77 34-118 36-112 (121)
170 1wf0_A TDP-43, TAR DNA-binding 99.7 4.9E-18 1.7E-22 114.9 8.0 77 35-118 3-79 (88)
171 3md3_A Nuclear and cytoplasmic 99.7 1.2E-17 4.3E-22 124.7 10.8 80 38-118 1-80 (166)
172 1b7f_A Protein (SXL-lethal pro 99.7 1.5E-17 5E-22 124.8 11.1 80 35-114 87-168 (168)
173 2qfj_A FBP-interacting repress 99.7 6.5E-18 2.2E-22 131.9 9.4 82 36-117 27-108 (216)
174 2pe8_A Splicing factor 45; RRM 99.7 2.8E-17 9.6E-22 115.0 11.1 82 35-116 6-93 (105)
175 1fxl_A Paraneoplastic encephal 99.7 2.2E-17 7.6E-22 123.5 10.2 80 35-114 86-167 (167)
176 3u1l_A PRE-mRNA-splicing facto 99.7 7.1E-18 2.4E-22 134.1 7.8 81 33-119 130-231 (240)
177 3pgw_A U1-A; protein-RNA compl 99.7 4.7E-17 1.6E-21 132.3 12.1 83 33-118 5-91 (282)
178 3nmr_A Cugbp ELAV-like family 99.7 3E-17 1E-21 123.8 9.5 80 35-115 93-175 (175)
179 1fje_B Nucleolin RBD12, protei 99.7 4.3E-17 1.5E-21 123.3 9.8 78 35-117 97-174 (175)
180 3nmr_A Cugbp ELAV-like family 99.7 4.5E-17 1.5E-21 122.8 9.7 82 37-118 3-89 (175)
181 2voo_A Lupus LA protein; RNA-b 99.7 8.1E-17 2.8E-21 124.6 11.0 78 37-116 109-186 (193)
182 2cjk_A Nuclear polyadenylated 99.7 3.1E-17 1.1E-21 123.0 8.0 79 36-116 2-80 (167)
183 2ghp_A U4/U6 snRNA-associated 99.7 9.1E-17 3.1E-21 131.3 11.3 83 34-117 207-291 (292)
184 2dit_A HIV TAT specific factor 99.7 3.4E-16 1.2E-20 110.6 12.1 81 34-118 12-103 (112)
185 3pgw_A U1-A; protein-RNA compl 99.7 1.3E-16 4.4E-21 129.8 10.9 76 35-115 205-281 (282)
186 2adc_A Polypyrimidine tract-bi 99.7 5.3E-17 1.8E-21 128.6 7.9 79 34-117 31-110 (229)
187 3smz_A Protein raver-1, ribonu 99.7 3.1E-16 1.1E-20 127.6 12.2 83 36-118 94-176 (284)
188 3smz_A Protein raver-1, ribonu 99.7 2.1E-16 7.2E-21 128.6 11.0 85 35-120 182-267 (284)
189 1fje_B Nucleolin RBD12, protei 99.7 3.5E-17 1.2E-21 123.8 4.1 85 32-118 8-92 (175)
190 1qm9_A Polypyrimidine tract-bi 99.7 1.1E-16 3.9E-21 123.5 6.7 77 37-118 3-80 (198)
191 3tyt_A Heterogeneous nuclear r 99.6 3.3E-16 1.1E-20 122.2 8.4 78 35-114 121-204 (205)
192 3sde_A Paraspeckle component 1 99.6 7.8E-16 2.7E-20 124.2 10.8 77 34-116 19-95 (261)
193 1qm9_A Polypyrimidine tract-bi 99.6 2.9E-16 1E-20 121.2 7.5 78 35-117 118-197 (198)
194 2adc_A Polypyrimidine tract-bi 99.6 5.5E-16 1.9E-20 122.7 9.1 78 35-117 149-228 (229)
195 3v4m_A Splicing factor U2AF 65 99.6 1.1E-15 3.7E-20 106.9 8.9 81 36-116 4-96 (105)
196 2ghp_A U4/U6 snRNA-associated 99.6 1.2E-15 4.3E-20 124.5 9.3 82 36-118 116-198 (292)
197 3ue2_A Poly(U)-binding-splicin 99.6 2.2E-15 7.4E-20 107.5 9.4 81 36-116 19-108 (118)
198 1jmt_A Splicing factor U2AF 35 99.6 3E-16 1E-20 109.6 4.3 72 42-114 20-103 (104)
199 2g4b_A Splicing factor U2AF 65 99.6 1.8E-15 6.1E-20 113.9 8.9 75 36-117 3-88 (172)
200 2yh0_A Splicing factor U2AF 65 99.6 2.6E-15 9E-20 115.4 9.5 76 36-118 3-89 (198)
201 3sde_A Paraspeckle component 1 99.6 3.1E-15 1.1E-19 120.7 10.3 81 36-117 95-179 (261)
202 3tht_A Alkylated DNA repair pr 99.6 4.1E-15 1.4E-19 124.0 9.2 76 34-115 15-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.6 4.1E-14 1.4E-18 97.9 10.9 75 37-118 10-91 (100)
204 3s6e_A RNA-binding protein 39; 99.5 1.1E-13 3.9E-18 97.9 10.4 78 35-116 5-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.4 6.4E-13 2.2E-17 94.5 10.2 79 32-116 13-95 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.4 1.2E-12 4.2E-17 87.7 8.3 75 36-119 6-88 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 1.5E-11 5.2E-16 82.8 4.9 72 35-115 13-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 1.8E-10 6.2E-15 90.4 8.3 80 37-116 124-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 99.0 2.6E-09 8.8E-14 73.4 8.7 74 35-114 19-97 (117)
210 1wey_A Calcipressin 1; structu 98.6 9.7E-08 3.3E-12 65.3 6.8 77 35-117 3-84 (104)
211 1uw4_A UPF3X; nonsense mediate 98.4 5.4E-06 1.8E-10 55.6 10.0 78 38-115 2-86 (91)
212 2dhx_A Poly (ADP-ribose) polym 98.3 1.5E-05 5E-10 54.3 10.5 73 35-116 6-83 (104)
213 1wwh_A Nucleoporin 35, nucleop 98.0 2.2E-05 7.6E-10 55.0 8.1 73 34-114 21-94 (119)
214 2l08_A Regulator of nonsense t 98.0 2.7E-05 9.2E-10 52.6 7.7 80 36-115 8-94 (97)
215 1whv_A Poly(A)-specific ribonu 98.0 4.2E-05 1.4E-09 51.5 8.1 55 37-100 16-70 (100)
216 3ctr_A Poly(A)-specific ribonu 97.8 4.8E-05 1.6E-09 51.3 5.4 53 39-100 8-60 (101)
217 3p3d_A Nucleoporin 53; structu 97.5 0.00025 8.6E-09 50.4 6.0 78 36-115 6-97 (132)
218 3pq1_A Poly(A) RNA polymerase; 96.9 0.00049 1.7E-08 59.3 3.5 56 37-98 53-108 (464)
219 2kn4_A Immunoglobulin G-bindin 96.4 0.0022 7.4E-08 46.8 3.6 33 67-101 3-35 (158)
220 2i2y_A Fusion protein consists 96.4 0.0009 3.1E-08 48.6 1.3 41 75-116 9-50 (150)
221 3d45_A Poly(A)-specific ribonu 94.4 0.089 3E-06 45.9 7.0 56 37-101 440-495 (507)
222 2g0c_A ATP-dependent RNA helic 94.4 0.053 1.8E-06 34.4 4.2 68 39-115 2-75 (76)
223 4eyt_A Telomerase associated p 94.0 0.28 9.5E-06 32.2 7.0 69 35-111 10-85 (129)
224 3lpe_A Putative transcription 81.6 4.6 0.00016 26.4 6.0 36 63-103 39-74 (92)
225 3fry_A Probable copper-exporti 81.5 4.9 0.00017 24.2 5.9 55 37-98 6-60 (73)
226 4e8u_A Putative uncharacterize 76.9 14 0.00049 27.1 7.8 48 38-88 13-71 (172)
227 3pgw_S U1-70K; protein-RNA com 76.1 8.7 0.0003 32.5 7.6 8 89-96 116-123 (437)
228 3dxs_X Copper-transporting ATP 72.4 12 0.00043 22.2 5.9 55 39-99 5-63 (74)
229 3j21_T 50S ribosomal protein L 72.0 11 0.00038 24.4 5.6 57 39-98 24-82 (86)
230 3ts2_A Protein LIN-28 homolog 71.4 0.73 2.5E-05 33.2 -0.3 28 52-87 2-29 (148)
231 4f25_A Polyadenylate-binding p 71.0 0.85 2.9E-05 30.9 0.0 19 35-53 95-113 (115)
232 4a4j_A Pacszia, cation-transpo 66.8 7.7 0.00026 22.7 3.9 55 38-98 4-61 (69)
233 2exu_A Transcription initiatio 66.1 16 0.00054 27.6 6.1 36 64-104 139-174 (200)
234 3h7h_B Transcription elongatio 64.9 16 0.00055 24.5 5.4 35 63-102 40-74 (106)
235 1yg0_A COP associated protein; 62.9 18 0.00062 20.3 5.4 54 39-98 4-60 (66)
236 1vq8_S 50S ribosomal protein L 59.5 18 0.00062 23.3 4.7 55 39-96 23-79 (85)
237 2xmw_A PACS-N, cation-transpor 59.4 22 0.00076 20.2 6.0 55 39-99 6-63 (71)
238 3u5e_X 60S ribosomal protein L 58.7 18 0.0006 25.7 4.9 55 39-96 80-136 (142)
239 4a17_R RPL23A, 60S ribosomal p 58.3 17 0.00057 26.1 4.7 55 39-96 88-144 (150)
240 2kt2_A Mercuric reductase; nme 57.9 24 0.00082 20.1 6.2 54 39-98 3-59 (69)
241 2g9o_A Copper-transporting ATP 56.8 15 0.00051 23.1 4.1 56 38-99 5-64 (90)
242 2l3m_A Copper-ION-binding prot 56.5 26 0.00088 20.0 5.8 55 38-98 7-65 (71)
243 3uzu_A Ribosomal RNA small sub 56.2 5.4 0.00018 31.6 2.1 33 38-70 115-147 (279)
244 1q8l_A Copper-transporting ATP 55.8 32 0.0011 20.9 7.0 57 37-99 10-70 (84)
245 4bby_A Alkyldihydroxyacetoneph 55.2 15 0.0005 32.9 5.0 54 45-99 351-408 (658)
246 1cpz_A Protein (COPZ); copper 55.1 26 0.00089 19.7 7.2 54 39-98 3-60 (68)
247 3iz5_X 60S ribosomal protein L 53.7 17 0.00059 26.1 4.2 56 39-97 90-147 (152)
248 3fut_A Dimethyladenosine trans 53.2 11 0.00038 29.7 3.5 32 37-69 110-141 (271)
249 2lfv_A Protein DAMX; cell divi 57.7 3 0.0001 28.2 0.0 67 37-108 25-93 (106)
250 2cfx_A HTH-type transcriptiona 52.0 55 0.0019 22.5 7.8 53 44-101 72-124 (144)
251 2ofg_X Zinc-transporting ATPas 51.9 47 0.0016 21.7 7.2 56 38-99 10-69 (111)
252 1osd_A MERP, hypothetical prot 51.8 31 0.0011 19.6 6.2 55 39-99 6-64 (72)
253 3cjk_B Copper-transporting ATP 51.8 33 0.0011 19.9 5.8 55 39-99 5-63 (75)
254 1yjr_A Copper-transporting ATP 50.9 34 0.0012 19.7 7.0 46 37-88 5-50 (75)
255 1aw0_A Menkes copper-transport 50.6 25 0.00085 20.1 4.2 55 39-99 6-64 (72)
256 1p6t_A Potential copper-transp 49.9 49 0.0017 22.4 6.3 30 40-69 78-107 (151)
257 1kvi_A Copper-transporting ATP 49.7 38 0.0013 19.9 6.5 57 37-99 9-69 (79)
258 1i4w_A Mitochondrial replicati 49.6 11 0.00039 31.0 3.1 22 39-60 144-165 (353)
259 1y3j_A Copper-transporting ATP 49.5 29 0.00099 20.4 4.5 55 39-99 6-64 (77)
260 1qyr_A KSGA, high level kasuga 49.4 15 0.00051 28.5 3.6 30 38-67 91-120 (252)
261 2w7a_A LINE-1 ORF1P; RNA-bindi 48.2 54 0.0019 21.7 5.7 75 38-112 4-98 (100)
262 1fvq_A Copper-transporting ATP 47.2 38 0.0013 19.3 4.9 55 39-99 5-62 (72)
263 1mwy_A ZNTA; open-faced beta-s 46.4 41 0.0014 19.4 7.4 56 38-99 5-62 (73)
264 2e5p_A Protein PHF1, PHD finge 46.3 8.4 0.00029 23.6 1.3 19 62-88 28-46 (68)
265 1xn9_A 30S ribosomal protein S 45.6 49 0.0017 21.9 5.2 49 47-96 28-81 (101)
266 2v94_A RPS24, 30S ribosomal pr 45.4 58 0.002 21.8 5.6 47 48-95 38-89 (107)
267 3lo3_A Uncharacterized conserv 44.5 44 0.0015 21.6 4.9 20 78-97 52-71 (94)
268 3ced_A Methionine import ATP-b 44.4 31 0.0011 22.5 4.1 61 40-100 23-86 (98)
269 2npt_B Mitogen-activated prote 43.9 32 0.0011 22.6 3.9 52 42-101 33-85 (100)
270 2cu1_A Mitogen-activated prote 43.7 14 0.00047 24.6 2.2 66 42-116 21-87 (103)
271 3p8b_B Transcription antitermi 43.6 34 0.0012 24.2 4.6 35 64-103 33-67 (152)
272 2yko_A LINE-1 ORF1P; RNA-bindi 43.5 79 0.0027 24.3 6.7 78 37-114 52-149 (233)
273 3ftd_A Dimethyladenosine trans 43.3 15 0.0005 28.5 2.7 29 38-66 96-124 (249)
274 3swz_A Steroid 17-alpha-hydrox 43.0 32 0.0011 28.7 5.1 50 40-98 17-70 (494)
275 2crl_A Copper chaperone for su 43.0 53 0.0018 21.0 5.2 54 39-99 22-76 (98)
276 3iwl_A Copper transport protei 42.9 48 0.0016 19.2 4.7 52 39-98 5-57 (68)
277 3tqs_A Ribosomal RNA small sub 42.9 7.6 0.00026 30.3 1.0 32 39-70 98-129 (255)
278 2ew9_A Copper-transporting ATP 42.4 44 0.0015 22.6 5.0 55 39-99 83-141 (149)
279 2qif_A Copper chaperone COPZ; 42.2 43 0.0015 18.5 6.0 54 39-98 5-62 (69)
280 1ywx_A 30S ribosomal protein S 41.7 59 0.002 21.6 5.1 47 47-94 28-79 (102)
281 1opz_A Potential copper-transp 41.6 49 0.0017 18.9 7.3 56 38-99 8-67 (76)
282 1vd2_A Protein kinase C, IOTA 41.0 60 0.0021 20.9 5.0 52 40-98 17-73 (89)
283 2lsl_A Telomerase associated p 46.5 5.9 0.0002 26.2 0.0 67 35-101 16-99 (137)
284 2m0o_A PHD finger protein 1; t 39.4 12 0.00042 23.5 1.3 19 62-88 45-63 (79)
285 2jrh_A Mitogen-activated prote 39.1 36 0.0012 22.0 3.6 65 43-116 18-83 (94)
286 2e1c_A Putative HTH-type trans 38.8 1.1E+02 0.0036 22.0 7.4 51 44-99 94-144 (171)
287 2cyy_A Putative HTH-type trans 38.3 96 0.0033 21.4 7.4 52 44-100 74-125 (151)
288 1i1g_A Transcriptional regulat 37.9 70 0.0024 21.6 5.4 48 50-101 76-124 (141)
289 4hhu_A OR280; engineered prote 37.5 52 0.0018 22.5 4.4 71 39-114 44-129 (170)
290 2cg4_A Regulatory protein ASNC 37.5 1E+02 0.0034 21.3 7.2 53 44-100 75-128 (152)
291 2uuu_A Alkyldihydroxyacetoneph 36.6 28 0.00097 30.6 3.8 55 45-100 281-339 (584)
292 2c60_A Human mitogen-activated 36.3 36 0.0012 22.7 3.3 50 44-101 46-96 (111)
293 2kyz_A Heavy metal binding pro 36.1 25 0.00087 20.1 2.5 53 39-98 4-56 (67)
294 2ldi_A Zinc-transporting ATPas 35.9 58 0.002 18.1 6.2 54 39-98 6-63 (71)
295 3i4p_A Transcriptional regulat 35.8 1E+02 0.0035 21.7 6.2 57 39-99 64-123 (162)
296 2lea_A Serine/arginine-rich sp 35.7 7.7 0.00026 26.9 0.0 28 79-106 4-31 (135)
297 2cs4_A Protein C12ORF2; GTP bi 35.6 15 0.00052 24.2 1.4 22 42-63 21-43 (95)
298 2e7g_A Putative ribosome-bindi 35.4 87 0.003 21.5 5.5 35 62-100 44-79 (129)
299 2qrr_A Methionine import ATP-b 35.3 70 0.0024 20.7 4.8 62 39-100 25-88 (101)
300 2k2p_A Uncharacterized protein 35.2 19 0.00067 22.4 1.9 55 38-98 24-79 (85)
301 2d8m_A DNA-repair protein XRCC 34.7 40 0.0014 23.0 3.6 29 35-64 23-51 (129)
302 1wvf_A 4-cresol dehydrogenase 34.6 30 0.001 29.9 3.5 43 53-96 217-261 (520)
303 2xzm_P RPS24E; ribosome, trans 34.4 91 0.0031 22.2 5.4 47 48-95 32-83 (149)
304 1jww_A Potential copper-transp 34.1 70 0.0024 18.5 4.6 55 39-99 6-64 (80)
305 2kgl_A Mesoderm development ca 34.0 1.5E+02 0.005 22.1 6.9 57 37-100 75-137 (195)
306 2zbc_A 83AA long hypothetical 33.9 79 0.0027 19.1 7.4 44 50-97 14-57 (83)
307 3bgu_A Ferredoxin-like protein 33.9 60 0.002 21.7 4.4 55 39-94 24-88 (116)
308 2rop_A Copper-transporting ATP 33.8 1.3E+02 0.0045 21.6 6.8 56 38-99 124-183 (202)
309 2eqj_A Metal-response element- 33.8 20 0.00067 21.9 1.6 10 79-88 41-50 (66)
310 3dhx_A Methionine import ATP-b 33.7 38 0.0013 22.3 3.3 54 48-101 32-87 (106)
311 2ns6_A Mobilization protein A; 33.5 1.1E+02 0.0037 22.5 6.1 49 37-88 70-126 (185)
312 3pm9_A Putative oxidoreductase 32.9 51 0.0017 28.1 4.7 54 45-99 194-251 (476)
313 2cvi_A 75AA long hypothetical 32.9 85 0.0029 19.2 7.3 44 50-97 14-57 (83)
314 2e5q_A PHD finger protein 19; 32.3 7.5 0.00026 23.4 -0.4 10 79-88 35-44 (63)
315 2okq_A Hypothetical protein YB 32.0 93 0.0032 21.9 5.0 46 53-98 49-109 (141)
316 3bde_A MLL5499 protein; stress 31.7 1.2E+02 0.004 20.4 6.3 57 38-94 22-86 (120)
317 3fjv_A Uncharacterized novel p 31.6 64 0.0022 24.1 4.4 56 50-112 66-128 (194)
318 2kkh_A Putative heavy metal tr 31.3 94 0.0032 19.2 7.5 56 38-99 18-77 (95)
319 2f06_A Conserved hypothetical 30.2 1.3E+02 0.0045 20.4 6.7 25 79-104 111-135 (144)
320 2qsw_A Methionine import ATP-b 30.0 65 0.0022 20.8 3.9 62 39-100 25-88 (100)
321 3e6i_A CYPIIE1, P450-J, cytoch 29.9 32 0.0011 28.4 2.9 49 41-98 20-71 (476)
322 1x60_A Sporulation-specific N- 29.4 51 0.0017 20.1 3.2 63 37-104 9-71 (79)
323 2dbb_A Putative HTH-type trans 29.2 1.4E+02 0.0047 20.4 6.6 46 51-100 82-129 (151)
324 2zkr_s 60S ribosomal protein L 29.1 47 0.0016 23.9 3.2 55 39-96 94-150 (156)
325 2w25_A Probable transcriptiona 28.9 1.4E+02 0.0048 20.4 7.4 44 52-99 82-125 (150)
326 2djw_A Probable transcriptiona 28.5 1E+02 0.0034 19.3 4.6 43 50-96 14-56 (92)
327 2g1d_A 30S ribosomal protein S 27.8 52 0.0018 21.7 3.0 46 48-94 30-80 (98)
328 2gu3_A YPMB protein; APC1927, 27.3 73 0.0025 22.1 4.0 47 42-88 68-127 (136)
329 1ytr_A Bacteriocin plantaricin 26.8 35 0.0012 16.0 1.4 12 51-62 14-25 (26)
330 2ko1_A CTR148A, GTP pyrophosph 26.8 1.1E+02 0.0038 18.5 7.2 60 40-101 8-68 (88)
331 1q4r_A Protein AT3G17210; cent 26.7 1.4E+02 0.0047 19.6 6.9 57 38-94 12-79 (112)
332 1mli_A Muconolactone isomerase 26.7 1.4E+02 0.0047 19.6 7.5 58 43-104 9-76 (96)
333 3tbg_A Cytochrome P450 2D6; mo 26.2 27 0.00092 28.9 1.8 47 41-96 20-69 (479)
334 3pm0_A Cypib1, cytochrome P450 26.2 79 0.0027 26.2 4.8 49 40-97 18-68 (507)
335 2p5v_A Transcriptional regulat 25.5 1.7E+02 0.0059 20.3 7.1 46 51-100 85-131 (162)
336 3bb5_A Stress responsive alpha 25.3 1.6E+02 0.0054 19.8 7.5 57 38-94 22-89 (121)
337 3mfb_A Uncharacterized protein 24.2 1.2E+02 0.004 21.8 4.6 37 49-85 3-42 (157)
338 1e8g_A Vanillyl-alcohol oxidas 23.8 42 0.0014 29.2 2.6 42 54-96 250-293 (560)
339 2i9x_A Putative septation prot 23.8 1.1E+02 0.0036 19.7 3.9 26 63-88 5-30 (87)
340 2rf4_B DNA-directed RNA polyme 23.0 42 0.0014 21.6 1.8 28 34-61 16-43 (87)
341 2od0_A Hypothetical protein VP 23.0 93 0.0032 20.3 3.7 21 49-69 4-24 (105)
342 4hcz_A PHD finger protein 1; p 22.7 42 0.0014 19.9 1.6 10 79-88 31-40 (58)
343 3bsu_A Ribonuclease H1, RNAse 22.5 1.2E+02 0.004 17.3 3.9 20 79-98 31-50 (53)
344 2xmm_A SSR2857 protein, ATX1; 22.5 93 0.0032 16.8 3.3 54 39-98 4-58 (64)
345 2pn6_A ST1022, 150AA long hypo 22.3 1.9E+02 0.0065 19.6 7.2 49 49-101 76-125 (150)
346 1wj6_A KIAA0049 protein, RSGI 21.4 1.3E+02 0.0043 19.9 3.9 62 46-115 33-94 (101)
347 3pyf_A 4-diphosphocytidyl-2-C- 21.2 1.6E+02 0.0056 23.1 5.5 34 80-113 259-292 (306)
348 2jya_A AGR_C_3324P, uncharacte 21.2 1.2E+02 0.0042 20.2 3.9 26 76-102 48-73 (106)
349 3ezj_A General secretion pathw 20.9 14 0.00049 28.3 -0.9 66 47-115 11-85 (241)
350 2k5n_A Putative cold-shock pro 20.8 44 0.0015 20.6 1.6 10 79-88 14-23 (74)
351 3bn7_A Ferredoxin-like protein 20.2 2E+02 0.0069 19.2 6.9 56 38-93 22-90 (120)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=2.6e-24 Score=149.54 Aligned_cols=82 Identities=29% Similarity=0.509 Sum_probs=78.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
-++++|||+|||+++|+++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 028313 115 EE 116 (210)
Q Consensus 115 ~~ 116 (210)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.91 E-value=2.3e-23 Score=179.83 Aligned_cols=85 Identities=28% Similarity=0.450 Sum_probs=80.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
.+.++|||+|||+.||+++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||+.|||+.|+|..|.|+|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 028313 115 EENRK 119 (210)
Q Consensus 115 ~~~~~ 119 (210)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87554
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=6.6e-23 Score=145.08 Aligned_cols=83 Identities=11% Similarity=0.141 Sum_probs=79.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
.+..+|||+||++.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|++|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 028313 115 EEN 117 (210)
Q Consensus 115 ~~~ 117 (210)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 4
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.5e-22 Score=141.34 Aligned_cols=86 Identities=33% Similarity=0.494 Sum_probs=81.4
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
..+..++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
++.++.
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998654
No 5
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.3e-22 Score=141.30 Aligned_cols=87 Identities=33% Similarity=0.457 Sum_probs=81.6
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
.....++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34568899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 028313 113 FAEENRK 119 (210)
Q Consensus 113 ~a~~~~~ 119 (210)
++.+...
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987653
No 6
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=2.1e-23 Score=142.68 Aligned_cols=84 Identities=23% Similarity=0.469 Sum_probs=77.4
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCC-ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhC-CeeEcCeEEEEEEe
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD-GYLLLGRELTVVFA 114 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~i~g~~i~v~~a 114 (210)
.++|||+|||+++|+++|+++|++|| .|..|.|+.++.+|.++|||||+|.+.++|+.||+.|+ +..|+|+.|.|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999998875 56799999999999
Q ss_pred ecCCCC
Q 028313 115 EENRKK 120 (210)
Q Consensus 115 ~~~~~~ 120 (210)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876543
No 7
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=3e-22 Score=137.36 Aligned_cols=84 Identities=20% Similarity=0.363 Sum_probs=79.2
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 32 ~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
......++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34566789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEee
Q 028313 112 VFAE 115 (210)
Q Consensus 112 ~~a~ 115 (210)
+||+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9984
No 8
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=2.4e-22 Score=138.04 Aligned_cols=84 Identities=30% Similarity=0.398 Sum_probs=79.4
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
..++.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44667899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred Eeec
Q 028313 113 FAEE 116 (210)
Q Consensus 113 ~a~~ 116 (210)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 9
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=2.2e-22 Score=139.33 Aligned_cols=85 Identities=33% Similarity=0.535 Sum_probs=80.7
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.++.
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98754
No 10
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.88 E-value=3.9e-22 Score=141.85 Aligned_cols=87 Identities=29% Similarity=0.535 Sum_probs=81.8
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
+....++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45668899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 028313 113 FAEENRK 119 (210)
Q Consensus 113 ~a~~~~~ 119 (210)
|+.++..
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9987653
No 11
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.9e-22 Score=141.14 Aligned_cols=86 Identities=28% Similarity=0.396 Sum_probs=81.3
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
.....++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44668899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
++.+..
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 997654
No 12
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=138.54 Aligned_cols=86 Identities=26% Similarity=0.473 Sum_probs=80.5
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
.....++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+ |++..|+|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34668899999999999999999999999999999999998899999999999999999999998 99999999999999
Q ss_pred EeecCCC
Q 028313 113 FAEENRK 119 (210)
Q Consensus 113 ~a~~~~~ 119 (210)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9987543
No 13
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.5e-22 Score=140.91 Aligned_cols=86 Identities=29% Similarity=0.459 Sum_probs=81.2
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
.....++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45668899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
++.+..
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 998754
No 14
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=135.82 Aligned_cols=83 Identities=28% Similarity=0.521 Sum_probs=76.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45779999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecC
Q 028313 115 EEN 117 (210)
Q Consensus 115 ~~~ 117 (210)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 15
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=9.3e-23 Score=140.53 Aligned_cols=86 Identities=21% Similarity=0.349 Sum_probs=78.5
Q ss_pred CCCCCCCCeEEEecCCCCCCHHHHHHHhccCCc--eEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCe----eE
Q 028313 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR--LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY----LL 104 (210)
Q Consensus 31 ~~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~----~i 104 (210)
......-.||||+|||+.+|+++|+++|++||. |..|.|+.|+.+|.++|||||+|.+.++|+.||+.|||. .|
T Consensus 3 ~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 3 HHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred cccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 344566789999999999999999999999995 678999999999999999999999999999999999996 59
Q ss_pred cCeEEEEEEeec
Q 028313 105 LGRELTVVFAEE 116 (210)
Q Consensus 105 ~g~~i~v~~a~~ 116 (210)
+|+.|.|+||+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999964
No 16
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.88 E-value=7e-22 Score=140.61 Aligned_cols=86 Identities=24% Similarity=0.342 Sum_probs=81.0
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
.....++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
|++++.
T Consensus 101 ~a~~~~ 106 (115)
T 2cpz_A 101 LKRSKN 106 (115)
T ss_dssp CCCCSC
T ss_pred EcCCCC
Confidence 998654
No 17
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=7.4e-22 Score=139.08 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=72.1
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcC-----e
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG-----R 107 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g-----~ 107 (210)
.....++|||+|||+++++++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||+.||+..|+| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3466889999999999999999999999999999999864 899999999999999999999999999 9
Q ss_pred EEEEEEeec
Q 028313 108 ELTVVFAEE 116 (210)
Q Consensus 108 ~i~v~~a~~ 116 (210)
.|.|++|.+
T Consensus 84 ~i~V~~a~~ 92 (108)
T 1x4c_A 84 YIRVKVDGP 92 (108)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999999976
No 18
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.88 E-value=3.9e-22 Score=133.56 Aligned_cols=82 Identities=32% Similarity=0.457 Sum_probs=78.0
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEeec
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~~ 116 (210)
.++|||+|||.++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.|++.|||..|+|+.|.|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 35899999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred CC
Q 028313 117 NR 118 (210)
Q Consensus 117 ~~ 118 (210)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=9.3e-22 Score=136.51 Aligned_cols=84 Identities=24% Similarity=0.451 Sum_probs=79.4
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||..+++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|+.||+.||+..|+|+.|.|++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98754
No 20
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.2e-21 Score=139.63 Aligned_cols=87 Identities=28% Similarity=0.363 Sum_probs=80.8
Q ss_pred CCCCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEE
Q 028313 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (210)
Q Consensus 31 ~~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 110 (210)
.......++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|++ .|+|+.|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34556789999999999999999999999999999999999998999999999999999999999999998 89999999
Q ss_pred EEEeecCC
Q 028313 111 VVFAEENR 118 (210)
Q Consensus 111 v~~a~~~~ 118 (210)
|+++....
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997643
No 21
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.88 E-value=2.5e-22 Score=135.16 Aligned_cols=82 Identities=34% Similarity=0.500 Sum_probs=78.1
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++..+|||||+|.+.++|+.|++.|||..|+|+.|.|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ee
Q 028313 114 AE 115 (210)
Q Consensus 114 a~ 115 (210)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 22
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.88 E-value=3.7e-22 Score=140.18 Aligned_cols=84 Identities=30% Similarity=0.426 Sum_probs=78.8
Q ss_pred CCCCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEE
Q 028313 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (210)
Q Consensus 31 ~~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 110 (210)
+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3455678899999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred EEEee
Q 028313 111 VVFAE 115 (210)
Q Consensus 111 v~~a~ 115 (210)
|++|.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 23
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=6.9e-22 Score=139.58 Aligned_cols=86 Identities=27% Similarity=0.345 Sum_probs=81.2
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhC------CeeEcC
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD------GYLLLG 106 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~------g~~i~g 106 (210)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|| +..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 45668899999999999999999999999999999999999899999999999999999999999999 999999
Q ss_pred eEEEEEEeecCC
Q 028313 107 RELTVVFAEENR 118 (210)
Q Consensus 107 ~~i~v~~a~~~~ 118 (210)
+.|.|.++.++.
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999998654
No 24
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=140.66 Aligned_cols=86 Identities=44% Similarity=0.661 Sum_probs=81.0
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
..+..++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34668899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
+++...
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998654
No 25
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=4e-22 Score=136.95 Aligned_cols=84 Identities=31% Similarity=0.542 Sum_probs=79.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecCC
Q 028313 115 EENR 118 (210)
Q Consensus 115 ~~~~ 118 (210)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7654
No 26
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=6e-22 Score=138.18 Aligned_cols=84 Identities=30% Similarity=0.517 Sum_probs=78.9
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++..+|||||+|.+.++|+.||+.||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4567889999999999999999999999999999999987 88899999999999999999999999999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
|+.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2d9p_A 89 LAQRKE 94 (103)
T ss_dssp ECSSCC
T ss_pred Eecccc
Confidence 998754
No 27
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=9.5e-22 Score=137.59 Aligned_cols=85 Identities=24% Similarity=0.372 Sum_probs=79.4
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcC---eEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG---RELT 110 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g---~~i~ 110 (210)
....++|||+|||+.+++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|+.||+.||+..|.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3568999999999999999999999999999999999887 78999999999999999999999999999998 9999
Q ss_pred EEEeecCCC
Q 028313 111 VVFAEENRK 119 (210)
Q Consensus 111 v~~a~~~~~ 119 (210)
|++|.+...
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999987653
No 28
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.6e-22 Score=140.24 Aligned_cols=87 Identities=30% Similarity=0.372 Sum_probs=81.2
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHhccCCceE--------EEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCee
Q 028313 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLK--------DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 103 (210)
Q Consensus 32 ~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 103 (210)
......++|||+|||+.+++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|+.||+.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456789999999999999999999999999998 69999998899999999999999999999999999999
Q ss_pred EcCeEEEEEEeecCC
Q 028313 104 LLGRELTVVFAEENR 118 (210)
Q Consensus 104 i~g~~i~v~~a~~~~ 118 (210)
|+|+.|.|.++.++.
T Consensus 90 ~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 90 FQGSKLKVSLARKKP 104 (113)
T ss_dssp ETTEECEEECSSCCC
T ss_pred cCCCEEEEEECCCCC
Confidence 999999999998654
No 29
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=8e-22 Score=138.35 Aligned_cols=86 Identities=34% Similarity=0.601 Sum_probs=80.8
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecC-CCCCCcceEEEEEecCHHHHHHHHHhh-CCeeEcCeEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRD-YYTGEPRGFGFVQYIDPADAADAKYHM-DGYLLLGRELT 110 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l-~g~~i~g~~i~ 110 (210)
.....++|||+|||+.+++++|+++|.+||.|..|.|+.+ +.++.++|||||+|.+.++|+.||+.| |+..|+|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4566889999999999999999999999999999999988 788999999999999999999999999 99999999999
Q ss_pred EEEeecCC
Q 028313 111 VVFAEENR 118 (210)
Q Consensus 111 v~~a~~~~ 118 (210)
|+|+.++.
T Consensus 91 v~~a~~~~ 98 (107)
T 2cph_A 91 LEWADSEV 98 (107)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99998754
No 30
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=7.4e-22 Score=140.92 Aligned_cols=84 Identities=31% Similarity=0.585 Sum_probs=79.4
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
.+..++|||+|||+++++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4667899999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+++..
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 97644
No 31
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.87 E-value=8.6e-22 Score=147.50 Aligned_cols=85 Identities=26% Similarity=0.318 Sum_probs=80.6
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|+|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
|.+..
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 98644
No 32
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.4e-22 Score=137.02 Aligned_cols=84 Identities=24% Similarity=0.394 Sum_probs=79.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEE-EEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDI-YLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
.+.++|||+|||+.+++++|+++|.+||.|..| .|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 347899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 98654
No 33
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.87 E-value=7e-22 Score=136.18 Aligned_cols=84 Identities=19% Similarity=0.336 Sum_probs=79.8
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEeec
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~~ 116 (210)
.++|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 67999999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 028313 117 NRKK 120 (210)
Q Consensus 117 ~~~~ 120 (210)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 6543
No 34
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.5e-21 Score=135.00 Aligned_cols=86 Identities=33% Similarity=0.534 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 32 ~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
......++|||+|||+.+++++|+++|.+||.|..|.|+.+.. .++|||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456689999999999999999999999999999999998753 37899999999999999999999999999999999
Q ss_pred EEeecCCC
Q 028313 112 VFAEENRK 119 (210)
Q Consensus 112 ~~a~~~~~ 119 (210)
+++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99987654
No 35
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=1.9e-21 Score=135.72 Aligned_cols=84 Identities=27% Similarity=0.397 Sum_probs=78.5
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
...+.++|||+|||+.+++++|+++|.+|| |..|.|+.++.++.++|||||+|.+.++|+.|| .||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345678999999999999999999999997 999999999989999999999999999999999 899999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
++.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2dng_A 89 IAEGRK 94 (103)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 997654
No 36
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.87 E-value=3.4e-22 Score=144.43 Aligned_cols=86 Identities=24% Similarity=0.374 Sum_probs=80.8
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|+|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34577999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 028313 114 AEENRK 119 (210)
Q Consensus 114 a~~~~~ 119 (210)
|.++..
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 987543
No 37
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.87 E-value=2.9e-22 Score=142.81 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=62.8
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
....++|||+|||+++++++|+++|.+||+|..|.|+.+ |||||+|.+.++|++||+.||+.+|+|+.|+|
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 355789999999999999999999999999999999854 89999999999999999999999999988433
No 38
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.4e-21 Score=136.61 Aligned_cols=83 Identities=20% Similarity=0.376 Sum_probs=78.0
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCC-CCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYT-GEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
..+.++|||+|||+.+++++|+++|.+|| |..|.|+.++.+ +.++|||||+|.+.++|+.|| .||+..|+|+.|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35578999999999999999999999999 999999999887 899999999999999999999 999999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
++.++.
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998754
No 39
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.9e-21 Score=137.02 Aligned_cols=86 Identities=24% Similarity=0.354 Sum_probs=79.4
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 32 ~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
......++|||+|||+.+++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 345668899999999999999999999999999999999887 6899999999999999999999999999999999999
Q ss_pred EEeecCC
Q 028313 112 VFAEENR 118 (210)
Q Consensus 112 ~~a~~~~ 118 (210)
+++....
T Consensus 89 ~~a~~~~ 95 (114)
T 2do0_A 89 KMDERAL 95 (114)
T ss_dssp EECSCCC
T ss_pred EEcccCC
Confidence 9987543
No 40
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=6.7e-22 Score=138.60 Aligned_cols=84 Identities=25% Similarity=0.387 Sum_probs=79.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|++|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45678999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred ecCC
Q 028313 115 EENR 118 (210)
Q Consensus 115 ~~~~ 118 (210)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8754
No 41
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=1.5e-21 Score=143.27 Aligned_cols=87 Identities=24% Similarity=0.456 Sum_probs=81.8
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 32 ~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
......++|||+|||.++++++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeecCC
Q 028313 112 VFAEENR 118 (210)
Q Consensus 112 ~~a~~~~ 118 (210)
+++.+..
T Consensus 117 ~~a~~~~ 123 (139)
T 1u6f_A 117 ALAASGH 123 (139)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9998754
No 42
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=1.2e-21 Score=138.32 Aligned_cols=85 Identities=22% Similarity=0.395 Sum_probs=80.3
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||+.+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98754
No 43
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=7.7e-22 Score=136.60 Aligned_cols=85 Identities=22% Similarity=0.369 Sum_probs=79.9
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceE-EEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeE----
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLK-DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE---- 108 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~---- 108 (210)
..+.++|||+|||+++++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|+.||+.|||..|.|..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45688999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 028313 109 LTVVFAEENR 118 (210)
Q Consensus 109 i~v~~a~~~~ 118 (210)
|+|+||.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997643
No 44
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.4e-21 Score=134.36 Aligned_cols=85 Identities=27% Similarity=0.372 Sum_probs=77.5
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 32 ~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
......++|||+|||+.+++++|+++|.+||.|..|.|+.+..+ .+|||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34567899999999999999999999999999999999988533 5899999999999999999999999999999999
Q ss_pred EEeecCC
Q 028313 112 VFAEENR 118 (210)
Q Consensus 112 ~~a~~~~ 118 (210)
+|+.+..
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqi_A 88 NWATTPS 94 (103)
T ss_dssp EECCCTT
T ss_pred EECCCCc
Confidence 9998754
No 45
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=9e-22 Score=136.01 Aligned_cols=84 Identities=27% Similarity=0.471 Sum_probs=78.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCC---CCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYY---TGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
.+.++|||+|||+++++++|+++|.+||.|..|.|+.++. ++.++|||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999998776 5588999999999999999999999999999999999
Q ss_pred EEeecCC
Q 028313 112 VFAEENR 118 (210)
Q Consensus 112 ~~a~~~~ 118 (210)
+++.+..
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9997654
No 46
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.87 E-value=6.1e-22 Score=143.96 Aligned_cols=86 Identities=31% Similarity=0.440 Sum_probs=81.1
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
..++.++|||+|||+++++++|+++|.+||.|..|.|+.++.++..+|||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44667899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
|+.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 997654
No 47
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=135.10 Aligned_cols=82 Identities=29% Similarity=0.382 Sum_probs=78.1
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEE--------EEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEc
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKD--------IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 105 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 105 (210)
....++|||+|||.++++++|+++|.+||.|.. |.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 456889999999999999999999999999999 999999889999999999999999999999999999999
Q ss_pred CeEEEEEEee
Q 028313 106 GRELTVVFAE 115 (210)
Q Consensus 106 g~~i~v~~a~ 115 (210)
|+.|.|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 48
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.6e-22 Score=144.09 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=75.7
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||+++++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|+.||+ ||+..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4567899999999999999999999999999886566666689999999999999999999998 999999999999999
Q ss_pred eecC
Q 028313 114 AEEN 117 (210)
Q Consensus 114 a~~~ 117 (210)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9764
No 49
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=1.1e-21 Score=139.68 Aligned_cols=81 Identities=23% Similarity=0.404 Sum_probs=74.8
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEeec
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~~ 116 (210)
.++|||+|||+.+++++|+++|.+||.|..|.|+.+. +.++|||||+|.+.++|+.||+.|+|..|+|+.|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999875 44789999999999999999999999999999999999976
Q ss_pred CCC
Q 028313 117 NRK 119 (210)
Q Consensus 117 ~~~ 119 (210)
+..
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 50
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.86 E-value=3.4e-21 Score=134.43 Aligned_cols=80 Identities=30% Similarity=0.485 Sum_probs=73.5
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
...+.++|||+|||+++++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.||+..|+|+.|.|+
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34567899999999999999999999999999999987 5699999999999999999999999999999999
Q ss_pred EeecCCCC
Q 028313 113 FAEENRKK 120 (210)
Q Consensus 113 ~a~~~~~~ 120 (210)
|+.+....
T Consensus 79 ~a~~~~~~ 86 (103)
T 2dgu_A 79 FAKPPDQK 86 (103)
T ss_dssp ECCCCCCC
T ss_pred EcCCCccc
Confidence 99876543
No 51
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=9.6e-22 Score=135.86 Aligned_cols=84 Identities=15% Similarity=0.214 Sum_probs=78.1
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
.+..++|||+|||+.+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 45578999999999999999999999999998888888888999999999999999999999999999999999999999
Q ss_pred eecC
Q 028313 114 AEEN 117 (210)
Q Consensus 114 a~~~ 117 (210)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8643
No 52
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.86 E-value=1.6e-22 Score=137.93 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=72.8
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCC--ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEee
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFG--RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 115 (210)
.+|||+|||+++++++|+++|.+|| .|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 028313 116 ENRK 119 (210)
Q Consensus 116 ~~~~ 119 (210)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7543
No 53
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=132.56 Aligned_cols=83 Identities=24% Similarity=0.468 Sum_probs=77.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCC-cceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGE-PRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~-~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
.+++|||+|||.++++++|+++|.+||.|..|.|+.+..++. .+|||||+|.+.++|+.|++.|||..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999998876665 8999999999999999999999999999999999999
Q ss_pred ecCC
Q 028313 115 EENR 118 (210)
Q Consensus 115 ~~~~ 118 (210)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 54
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.4e-21 Score=134.32 Aligned_cols=84 Identities=35% Similarity=0.529 Sum_probs=76.3
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 32 ~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
......++|||+|||+++++++|+++|.+||.|..|.|+.+ +.++|||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34567789999999999999999999999999999998654 457899999999999999999999999999999999
Q ss_pred EEeecCC
Q 028313 112 VFAEENR 118 (210)
Q Consensus 112 ~~a~~~~ 118 (210)
+|+++..
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4a_A 94 EFPRSGR 100 (109)
T ss_dssp ECCCCCC
T ss_pred EEcccCC
Confidence 9997654
No 55
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.86 E-value=1e-21 Score=137.65 Aligned_cols=86 Identities=20% Similarity=0.391 Sum_probs=80.2
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeE---cCeEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL---LGREL 109 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i---~g~~i 109 (210)
.....++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..| .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999987 88999
Q ss_pred EEEEeecCC
Q 028313 110 TVVFAEENR 118 (210)
Q Consensus 110 ~v~~a~~~~ 118 (210)
.|.++.+..
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998654
No 56
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.86 E-value=2e-21 Score=138.81 Aligned_cols=83 Identities=24% Similarity=0.339 Sum_probs=78.2
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
.....++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Eee
Q 028313 113 FAE 115 (210)
Q Consensus 113 ~a~ 115 (210)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 974
No 57
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=134.00 Aligned_cols=83 Identities=29% Similarity=0.426 Sum_probs=77.6
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
..+..++|||+|||+.+++++|+++|.+||.|..|.|+.++. +.++|||||+|.+.++|+.||+.||+..|+|+.|.|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 446678999999999999999999999999999999998875 8899999999999999999999999999999999999
Q ss_pred Eeec
Q 028313 113 FAEE 116 (210)
Q Consensus 113 ~a~~ 116 (210)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9863
No 58
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=136.40 Aligned_cols=87 Identities=29% Similarity=0.398 Sum_probs=80.9
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 32 ~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
...+..++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+. ++..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3456789999999999999999999999999999999999988999999999999999999999988 999999999999
Q ss_pred EEeecCCC
Q 028313 112 VFAEENRK 119 (210)
Q Consensus 112 ~~a~~~~~ 119 (210)
+++.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99986553
No 59
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.86 E-value=5.7e-22 Score=136.20 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=75.6
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||+.+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred ee
Q 028313 114 AE 115 (210)
Q Consensus 114 a~ 115 (210)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 60
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.86 E-value=2.7e-22 Score=139.48 Aligned_cols=83 Identities=20% Similarity=0.225 Sum_probs=78.8
Q ss_pred CCCCeEEEecCCC------CCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcC-e
Q 028313 35 DLPTSLLVRNLRH------DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG-R 107 (210)
Q Consensus 35 ~~~~~l~V~nL~~------~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g-~ 107 (210)
...++|||+|||+ ++++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4468999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEEEeecC
Q 028313 108 ELTVVFAEEN 117 (210)
Q Consensus 108 ~i~v~~a~~~ 117 (210)
.|.|.+|.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999753
No 61
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=137.20 Aligned_cols=84 Identities=33% Similarity=0.554 Sum_probs=79.7
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|+|..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecC
Q 028313 114 AEEN 117 (210)
Q Consensus 114 a~~~ 117 (210)
++++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9764
No 62
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.86 E-value=3.3e-21 Score=145.69 Aligned_cols=85 Identities=22% Similarity=0.395 Sum_probs=79.8
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||+.+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+..+.
T Consensus 149 a~~~~ 153 (165)
T 1rk8_A 149 CFVKG 153 (165)
T ss_dssp SEECC
T ss_pred ecCCC
Confidence 98754
No 63
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=2.6e-21 Score=132.07 Aligned_cols=83 Identities=27% Similarity=0.399 Sum_probs=77.3
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||..+++++|+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|+.||+.||+..|+|+.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999874 788999999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.+..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 97654
No 64
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.5e-21 Score=132.23 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=75.2
Q ss_pred CCCCeEEEecCCCCCCHHHHH----HHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEE
Q 028313 35 DLPTSLLVRNLRHDCRPEDLR----GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 110 (210)
...++|||+|||+.+++++|+ ++|.+||.|..|.|+.++.+ +|||||+|.+.++|+.||+.|||..|+|+.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 446799999999999999999 99999999999999988755 78999999999999999999999999999999
Q ss_pred EEEeecCC
Q 028313 111 VVFAEENR 118 (210)
Q Consensus 111 v~~a~~~~ 118 (210)
|++|++..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997654
No 65
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.8e-21 Score=138.28 Aligned_cols=83 Identities=20% Similarity=0.377 Sum_probs=78.4
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.|| .||+..|+|+.|.|++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999999999988999999999999999999999 9999999999999999
Q ss_pred eecC
Q 028313 114 AEEN 117 (210)
Q Consensus 114 a~~~ 117 (210)
+.+.
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 9754
No 66
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=135.65 Aligned_cols=84 Identities=23% Similarity=0.284 Sum_probs=79.1
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhcc-CCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCee-EcCeEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQ-FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL-LLGRELTV 111 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-i~g~~i~v 111 (210)
..+.++|||+|||+++++++|+++|.+ ||.|..|.|+.++ ++.++|||||+|.+.++|+.||+.||+.. |+|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred EEeecCC
Q 028313 112 VFAEENR 118 (210)
Q Consensus 112 ~~a~~~~ 118 (210)
.++.++.
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9997654
No 67
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.85 E-value=1.9e-20 Score=134.91 Aligned_cols=87 Identities=28% Similarity=0.386 Sum_probs=81.2
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 32 ~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
......++|||+|||..+++++|+++|.+||.|..|.|+.+. +|..+|||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345678899999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 028313 112 VFAEENRK 119 (210)
Q Consensus 112 ~~a~~~~~ 119 (210)
++|.....
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99987654
No 68
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.85 E-value=7.5e-21 Score=128.53 Aligned_cols=81 Identities=28% Similarity=0.406 Sum_probs=75.7
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
.....++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+ +++..|+|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34668899999999999999999999999999999999999899999999999999999999995 58889999999998
Q ss_pred Ee
Q 028313 113 FA 114 (210)
Q Consensus 113 ~a 114 (210)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 69
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=131.37 Aligned_cols=85 Identities=22% Similarity=0.409 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 32 ~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
......++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+ ++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 345668899999999999999999999999999999999998899999999999999999999997 478999999999
Q ss_pred EEeecCC
Q 028313 112 VFAEENR 118 (210)
Q Consensus 112 ~~a~~~~ 118 (210)
.++.++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqg_A 88 KLPNSKQ 94 (103)
T ss_dssp ECCCTTC
T ss_pred EecCCCC
Confidence 9998754
No 70
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.85 E-value=2.3e-21 Score=145.35 Aligned_cols=84 Identities=13% Similarity=0.187 Sum_probs=78.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCC--ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFG--RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
+..++|||+|||+++++++|+++|..|| .|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
+|.++.
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 997643
No 71
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=128.59 Aligned_cols=82 Identities=13% Similarity=0.210 Sum_probs=76.9
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||+++++++|+++|..| .|..|.|+.+ .+|.++|||||+|.+.++|+.||+ ||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999988 689999999999999999999999 999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.+..
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 97653
No 72
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.85 E-value=7.1e-21 Score=139.62 Aligned_cols=83 Identities=34% Similarity=0.486 Sum_probs=78.2
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 32 ~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
......++|||+|||..+++++|+++|.+||.|..|.|+.++.++..+|||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44567889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEe
Q 028313 112 VFA 114 (210)
Q Consensus 112 ~~a 114 (210)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 73
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.85 E-value=5.3e-21 Score=129.67 Aligned_cols=80 Identities=24% Similarity=0.502 Sum_probs=76.6
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEeec
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~~ 116 (210)
.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.|+ .||+..|+|+.|.|+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 9999999999999999876
Q ss_pred C
Q 028313 117 N 117 (210)
Q Consensus 117 ~ 117 (210)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 74
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=6.3e-21 Score=134.95 Aligned_cols=85 Identities=19% Similarity=0.307 Sum_probs=77.6
Q ss_pred CCCCCeEEEecCCCCCCHHHHH---HHhccCCceEEEEEecCCCCC---CcceEEEEEecCHHHHHHHHHhhCCeeEcCe
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLR---GPFGQFGRLKDIYLPRDYYTG---EPRGFGFVQYIDPADAADAKYHMDGYLLLGR 107 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~---~~f~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~ 107 (210)
..+.++|||+|||+.+++++|. ++|.+||.|..|.|+.+..++ .++|||||+|.+.++|+.||+.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4567899999999999999999 999999999999999887644 4569999999999999999999999999999
Q ss_pred EEEEEEeecCC
Q 028313 108 ELTVVFAEENR 118 (210)
Q Consensus 108 ~i~v~~a~~~~ 118 (210)
.|.|+||.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998754
No 75
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.1e-21 Score=137.17 Aligned_cols=84 Identities=17% Similarity=0.112 Sum_probs=77.6
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCce-EEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRL-KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
...+.++|||+|||+++++++|+++|..||.| ..|.|+.++ +|.++|||||+|.+.++|+.||+. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 889999998 999999999999999999999976 999999999999
Q ss_pred EEeecCC
Q 028313 112 VFAEENR 118 (210)
Q Consensus 112 ~~a~~~~ 118 (210)
.++..+.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997643
No 76
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.2e-21 Score=135.50 Aligned_cols=81 Identities=14% Similarity=0.212 Sum_probs=73.5
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCC--eeEcCeEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG--YLLLGRELTV 111 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~i~g~~i~v 111 (210)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|++.++|+.||+.|++ ..|+|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456889999999999999999999999999999999865 79999999999999999998864 7899999999
Q ss_pred EEeecCCCC
Q 028313 112 VFAEENRKK 120 (210)
Q Consensus 112 ~~a~~~~~~ 120 (210)
+||+.+...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999876543
No 77
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.85 E-value=7.8e-21 Score=145.33 Aligned_cols=85 Identities=28% Similarity=0.391 Sum_probs=79.4
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
.....++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|+.||+.||+..|+|+.|+|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
||....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997643
No 78
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=8e-21 Score=134.05 Aligned_cols=86 Identities=28% Similarity=0.390 Sum_probs=76.5
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
.....++|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.+ +..|+|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999989999999999999999999999876 599999999999
Q ss_pred EeecCCC
Q 028313 113 FAEENRK 119 (210)
Q Consensus 113 ~a~~~~~ 119 (210)
++.+...
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9986543
No 79
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.8e-20 Score=130.47 Aligned_cols=81 Identities=12% Similarity=0.166 Sum_probs=72.8
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhh--CCeeEcCeEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM--DGYLLLGRELTV 111 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~i~g~~i~v 111 (210)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|++.++|+.||+.| ++..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 356789999999999999999999999999999998865 799999999999999999977 467899999999
Q ss_pred EEeecCCCC
Q 028313 112 VFAEENRKK 120 (210)
Q Consensus 112 ~~a~~~~~~ 120 (210)
+|++.+..+
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999866543
No 80
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-21 Score=137.05 Aligned_cols=84 Identities=30% Similarity=0.474 Sum_probs=79.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecCC
Q 028313 115 EENR 118 (210)
Q Consensus 115 ~~~~ 118 (210)
.+..
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7654
No 81
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=132.01 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=76.2
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEE-EEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKD-IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
.....++|||+|||+.+++++|+++|.+||.|.. |.|+.+ .+|.++|||||+|.+.++|+.||+. ++..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 4466789999999999999999999999999987 888888 6899999999999999999999987 999999999999
Q ss_pred EEeecC
Q 028313 112 VFAEEN 117 (210)
Q Consensus 112 ~~a~~~ 117 (210)
.++...
T Consensus 89 ~~~~~~ 94 (104)
T 1wg5_A 89 FKSSRA 94 (104)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 998654
No 82
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=129.81 Aligned_cols=80 Identities=28% Similarity=0.381 Sum_probs=73.6
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEc--CeEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL--GRELT 110 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~--g~~i~ 110 (210)
...+.++|||+|||.++++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|+.||+.||+..|+ |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999999854 789999999999999999999999999 99999
Q ss_pred EEEeecCC
Q 028313 111 VVFAEENR 118 (210)
Q Consensus 111 v~~a~~~~ 118 (210)
|+|++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998754
No 83
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.8e-20 Score=129.22 Aligned_cols=82 Identities=18% Similarity=0.333 Sum_probs=73.8
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
.....++|||+|||+.+++++|+++|.+||.| .|+.+ .++..+|||||+|.+.++|+.||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44568899999999999999999999999987 45555 578899999999999999999999999999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
|+.++.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 997653
No 84
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.7e-21 Score=134.10 Aligned_cols=87 Identities=32% Similarity=0.539 Sum_probs=78.3
Q ss_pred CCCCCCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeE
Q 028313 29 YGGRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (210)
Q Consensus 29 ~~~~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 108 (210)
.........++|||+|||.++++++|+++|.+||.|..|.|+.+. +.++|||||+|.+.++|+.|++.|||..|+|+.
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 334456678999999999999999999999999999999998875 347899999999999999999999999999999
Q ss_pred EEEEEeecC
Q 028313 109 LTVVFAEEN 117 (210)
Q Consensus 109 i~v~~a~~~ 117 (210)
|.|+++.++
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999764
No 85
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=141.82 Aligned_cols=85 Identities=21% Similarity=0.393 Sum_probs=79.3
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEE--EEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCe----eEcC
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKD--IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY----LLLG 106 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~----~i~g 106 (210)
.....++|||+|||+++++++|+++|.+||.|.. |.|+.++.+|.++|||||+|.+. +|+.||+.|||. .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3466789999999999999999999999999976 99999999999999999999999 999999999999 9999
Q ss_pred eEEEEEEeecCC
Q 028313 107 RELTVVFAEENR 118 (210)
Q Consensus 107 ~~i~v~~a~~~~ 118 (210)
+.|.|+++.+..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999997653
No 86
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=133.96 Aligned_cols=83 Identities=27% Similarity=0.362 Sum_probs=78.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
...++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+. ++..|+|+.|.|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4468999999999999999999999999999999999998999999999999999999999987 999999999999999
Q ss_pred ecCC
Q 028313 115 EENR 118 (210)
Q Consensus 115 ~~~~ 118 (210)
.++.
T Consensus 104 ~~~~ 107 (116)
T 1x4b_A 104 VARE 107 (116)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 8654
No 87
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.5e-21 Score=133.58 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=75.9
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
.....+|||+|||+++|+++|+++|.+||.|..|.|+.++. |.++|||||+|.+.++|+.||+ +++..|+|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999999986 9999999999999999999997 899999999999999
Q ss_pred eec
Q 028313 114 AEE 116 (210)
Q Consensus 114 a~~ 116 (210)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 764
No 88
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=132.58 Aligned_cols=85 Identities=20% Similarity=0.266 Sum_probs=78.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCc-eEEEEEe-cCCCCCCcceEEEEEecCHHHHHHHHHhhC--CeeEcCeEEE
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGR-LKDIYLP-RDYYTGEPRGFGFVQYIDPADAADAKYHMD--GYLLLGRELT 110 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~-i~~v~i~-~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--g~~i~g~~i~ 110 (210)
.+.++|||+|||+.+++++|+++|.+||. |..|.|+ .+..++.++|||||+|.+.++|+.||+.|+ +..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34789999999999999999999999998 9999998 788888999999999999999999999996 5899999999
Q ss_pred EEEeecCCC
Q 028313 111 VVFAEENRK 119 (210)
Q Consensus 111 v~~a~~~~~ 119 (210)
|+||.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 89
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.84 E-value=1.3e-20 Score=134.87 Aligned_cols=84 Identities=17% Similarity=0.122 Sum_probs=77.3
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHhccCCc---eEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeE
Q 028313 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR---LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (210)
Q Consensus 32 ~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 108 (210)
......++|||+|||+++++++|+++|..||. |..|.|+.++. |.++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34566889999999999999999999999998 89999998875 9999999999999999999998 9999999999
Q ss_pred EEEEEeecC
Q 028313 109 LTVVFAEEN 117 (210)
Q Consensus 109 i~v~~a~~~ 117 (210)
|.|.++..+
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998653
No 90
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-21 Score=134.36 Aligned_cols=83 Identities=22% Similarity=0.372 Sum_probs=74.9
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCC-CCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDY-YTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
.....++|||+|||.++++++|+++|.+|| |..|.|+.++ .+|.++|||||+|.+.++|+.|| .|||..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 346689999999999999999999999999 9999999988 68999999999999999999999 89999999999999
Q ss_pred EEeecC
Q 028313 112 VFAEEN 117 (210)
Q Consensus 112 ~~a~~~ 117 (210)
+++.+.
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 999764
No 91
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=127.67 Aligned_cols=77 Identities=22% Similarity=0.416 Sum_probs=72.0
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||+.+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.||+..|+|+.|.|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4567899999999999999999999999999999998 45999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.++.
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 97654
No 92
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-21 Score=131.59 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=75.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
.+.++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999887664
No 93
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=2e-20 Score=140.19 Aligned_cols=85 Identities=48% Similarity=0.724 Sum_probs=80.6
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||+.+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.+..
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 98754
No 94
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=9.3e-21 Score=131.97 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=71.7
Q ss_pred CCCCCeEEEecCCC-CCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCC--eeEcCeEEE
Q 028313 34 RDLPTSLLVRNLRH-DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG--YLLLGRELT 110 (210)
Q Consensus 34 ~~~~~~l~V~nL~~-~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~i~g~~i~ 110 (210)
.++.++|||+|||+ .+++++|+++|.+||.|..|.|+.+ ++||||+|++.++|+.||+.||+ ..|+|+.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 35678999999999 9999999999999999999999865 58999999999999999999886 469999999
Q ss_pred EEEeecCC
Q 028313 111 VVFAEENR 118 (210)
Q Consensus 111 v~~a~~~~ 118 (210)
|+||+...
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998543
No 95
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=128.25 Aligned_cols=77 Identities=23% Similarity=0.431 Sum_probs=72.3
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||.++++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.||+..|+|+.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999998 68999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.++.
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98654
No 96
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=131.28 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=75.4
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
.....++|||+|||+++++++|+++|.+||. ..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 3456789999999999999999999999995 499999998 8999999999999999999999 579999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
++.+..
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987543
No 97
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.2e-20 Score=131.67 Aligned_cols=85 Identities=22% Similarity=0.392 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeE-------
Q 028313 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL------- 104 (210)
Q Consensus 32 ~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i------- 104 (210)
......++|||+|||+.+++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|+.||+.|||..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 445678999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred -cCeEEEEEEeecC
Q 028313 105 -LGRELTVVFAEEN 117 (210)
Q Consensus 105 -~g~~i~v~~a~~~ 117 (210)
.+++|.|.||.+.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999999753
No 98
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=4.2e-21 Score=126.19 Aligned_cols=75 Identities=25% Similarity=0.319 Sum_probs=72.0
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
+|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++|++ ||+..|+|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999996 9999999999999876
No 99
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=129.82 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=71.7
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCee--EcCeEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL--LLGRELTV 111 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~--i~g~~i~v 111 (210)
..+..+|||+|||..+++++|.++|.+||.|..|.|+.. +|||||+|++.++|+.||+.|++.. |.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 356789999999999999999999999999999999854 7899999999999999999999864 88999999
Q ss_pred EEeecCC
Q 028313 112 VFAEENR 118 (210)
Q Consensus 112 ~~a~~~~ 118 (210)
+|++.+.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9997653
No 100
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=3.1e-21 Score=141.32 Aligned_cols=86 Identities=48% Similarity=0.716 Sum_probs=80.8
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
.....++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|+
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
|+++..
T Consensus 123 ~a~~~~ 128 (135)
T 2lea_A 123 MARYGR 128 (135)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998654
No 101
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.3e-20 Score=126.99 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=72.4
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHhccC--CceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEE
Q 028313 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQF--GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (210)
Q Consensus 32 ~~~~~~~~l~V~nL~~~~te~~l~~~f~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i 109 (210)
......++|||+|||+.+++++|+++|.+| |.|..|.++ +|||||+|.+.++|+.||+.||+..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999 999999876 6799999999999999999999999999999
Q ss_pred EEEEeecCC
Q 028313 110 TVVFAEENR 118 (210)
Q Consensus 110 ~v~~a~~~~ 118 (210)
.|+++++..
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpd_A 82 EVTLAKPVD 90 (99)
T ss_dssp EEECCCCCC
T ss_pred EEEECCCCC
Confidence 999997654
No 102
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=124.90 Aligned_cols=77 Identities=26% Similarity=0.382 Sum_probs=71.5
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhh-CCeeEcCeEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM-DGYLLLGRELTV 111 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l-~g~~i~g~~i~v 111 (210)
.....++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|+.|++.| ++..|+|+.|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456789999999999999999999999999999999864 799999999999999999988 999999999999
Q ss_pred EEee
Q 028313 112 VFAE 115 (210)
Q Consensus 112 ~~a~ 115 (210)
+||+
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 103
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-20 Score=130.76 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=71.8
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCC--eeEcCeEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG--YLLLGRELTV 111 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~i~g~~i~v 111 (210)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|++.++|+.||+.|++ ..|+|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999998854 79999999999999999998875 4599999999
Q ss_pred EEeecCCC
Q 028313 112 VFAEENRK 119 (210)
Q Consensus 112 ~~a~~~~~ 119 (210)
+|++.+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99986543
No 104
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=126.94 Aligned_cols=77 Identities=22% Similarity=0.410 Sum_probs=71.8
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||+++++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999998 45999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.+..
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97654
No 105
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=2.1e-20 Score=125.42 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=69.9
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEee
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 115 (210)
...-|||+||++.++|++|+++|.+||+|..+.++. ++|||||+|.+.++|+.|++.||+..|+|+.|.|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356899999999999999999999999999999985 38999999999999999999999999999999999994
No 106
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=128.25 Aligned_cols=82 Identities=28% Similarity=0.408 Sum_probs=74.4
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
..+.++|||+|||+.+++++|+++|..|+ .|.++.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999874 566777777899999999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
++++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98654
No 107
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.83 E-value=2e-20 Score=134.71 Aligned_cols=81 Identities=23% Similarity=0.468 Sum_probs=77.2
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEee
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 115 (210)
..++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.|| .|||..|+|+.|.|+++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 899999999999999997
Q ss_pred cC
Q 028313 116 EN 117 (210)
Q Consensus 116 ~~ 117 (210)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 108
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.6e-20 Score=129.00 Aligned_cols=79 Identities=30% Similarity=0.526 Sum_probs=73.5
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|+.||+.||+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999999855 78999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.++.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 97654
No 109
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=134.26 Aligned_cols=81 Identities=14% Similarity=0.212 Sum_probs=73.4
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCC--eeEcCeEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG--YLLLGRELTV 111 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~i~g~~i~v 111 (210)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|++.++|+.||+.|++ ..|.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 456789999999999999999999999999999999865 79999999999999999998884 6899999999
Q ss_pred EEeecCCCC
Q 028313 112 VFAEENRKK 120 (210)
Q Consensus 112 ~~a~~~~~~ 120 (210)
+||+.+..+
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 110
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=129.35 Aligned_cols=81 Identities=31% Similarity=0.464 Sum_probs=72.6
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
..+..++|||+|||+.+++++|+++|.+||.|. +.++. +..+|||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456688999999999999999999999999996 56653 3568999999999999999999999999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
++.++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998654
No 111
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.83 E-value=1.3e-20 Score=137.95 Aligned_cols=84 Identities=18% Similarity=0.133 Sum_probs=78.1
Q ss_pred CCCCCCCCeEEEecCCCCCCHHHHHHHhccCCc---eEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCe
Q 028313 31 GRGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR---LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 107 (210)
Q Consensus 31 ~~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~ 107 (210)
+++....++|||+|||+++|+++|+++|.+||. |..|.|+.++. |.++|||||+|.+.++|++||+ ||+..|+|+
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 455677899999999999999999999999999 88999999886 9999999999999999999998 999999999
Q ss_pred EEEEEEeec
Q 028313 108 ELTVVFAEE 116 (210)
Q Consensus 108 ~i~v~~a~~ 116 (210)
.|.|.++..
T Consensus 116 ~i~V~~a~~ 124 (136)
T 2hgl_A 116 YIEVFKSHR 124 (136)
T ss_dssp EEEEEECCH
T ss_pred EEEEEECCh
Confidence 999999864
No 112
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.83 E-value=1e-20 Score=150.35 Aligned_cols=83 Identities=19% Similarity=0.206 Sum_probs=77.8
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCC--ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFG--RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
..++|||+||+++|++++|+++|.+|| .|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
|+...
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 97543
No 113
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.6e-21 Score=125.73 Aligned_cols=76 Identities=30% Similarity=0.477 Sum_probs=73.3
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.|++.|+ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998899999999999999999999999999 9999999999987
No 114
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.83 E-value=1.7e-20 Score=132.71 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=72.2
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCC-ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
.....++|||+|||+++++++|+++|.+|| .|..|.|+.. .++|||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345578999999999999999999999999 8999988632 46899999999999999999999999999999999
Q ss_pred EEeecC
Q 028313 112 VFAEEN 117 (210)
Q Consensus 112 ~~a~~~ 117 (210)
+++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998643
No 115
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.83 E-value=2.8e-21 Score=131.48 Aligned_cols=81 Identities=28% Similarity=0.495 Sum_probs=74.0
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEeecC
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 117 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~~~ 117 (210)
++|||+|||.++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.+ |+.|++.|||..|+|+.|.|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 48999999999999999999999999999999999989999999999999999 99999999999999999999999875
Q ss_pred CC
Q 028313 118 RK 119 (210)
Q Consensus 118 ~~ 119 (210)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 116
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=7.1e-20 Score=126.48 Aligned_cols=77 Identities=26% Similarity=0.487 Sum_probs=71.4
Q ss_pred CCCCCCeEEEecCCC-CCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 33 GRDLPTSLLVRNLRH-DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~-~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
.....++|||+|||+ ++++++|+++|.+||.|..|.|. +|||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 445688999999998 99999999999999999999985 789999999999999999999999999999999
Q ss_pred EEeecC
Q 028313 112 VFAEEN 117 (210)
Q Consensus 112 ~~a~~~ 117 (210)
++++..
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999754
No 117
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=2.4e-20 Score=130.67 Aligned_cols=81 Identities=25% Similarity=0.462 Sum_probs=74.8
Q ss_pred CCCCeEEEecCCCCC------CHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCe-
Q 028313 35 DLPTSLLVRNLRHDC------RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR- 107 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~------te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~- 107 (210)
...++|||+|||+.+ ++++|+++|.+||.|..|.|+ ..+|.++|||||+|.+.++|+.||+.|||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 447899999999999 789999999999999999988 35889999999999999999999999999999998
Q ss_pred EEEEEEeecC
Q 028313 108 ELTVVFAEEN 117 (210)
Q Consensus 108 ~i~v~~a~~~ 117 (210)
.|.|+++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999754
No 118
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.6e-20 Score=129.67 Aligned_cols=79 Identities=24% Similarity=0.366 Sum_probs=73.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
....+|||+|||+++++++|+++|..| .|..|.|+.++. |.++|||||+|.+.++|++|| .||+..|+|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345799999999999999999999999 899999999874 999999999999999999999 79999999999999888
Q ss_pred ec
Q 028313 115 EE 116 (210)
Q Consensus 115 ~~ 116 (210)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 119
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.2e-20 Score=129.27 Aligned_cols=79 Identities=18% Similarity=0.366 Sum_probs=73.9
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|+.||+.|+|..|+|+.|.|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 355789999999999999999999999999999999866 78999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.+..
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98754
No 120
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=5.7e-20 Score=129.47 Aligned_cols=78 Identities=29% Similarity=0.499 Sum_probs=72.6
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
.....++|||+|||.++++++|+++|.+||.|..|.|+ +|||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34667899999999999999999999999999999988 7899999999999999999999999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
|+.+..
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 998654
No 121
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=4.4e-20 Score=133.67 Aligned_cols=83 Identities=18% Similarity=0.340 Sum_probs=74.1
Q ss_pred CCCCCCeEEEecCCCCCCHHHHH----HHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLR----GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 108 (210)
...+.++|||+|||+.+++++|+ ++|.+||.|..|.+.. ++.++|||||+|.+.++|+.||+.|||..|.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34567899999999999999876 6999999999988753 6788999999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 028313 109 LTVVFAEENR 118 (210)
Q Consensus 109 i~v~~a~~~~ 118 (210)
|.|+||..+.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999997643
No 122
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.3e-21 Score=135.51 Aligned_cols=81 Identities=26% Similarity=0.418 Sum_probs=73.0
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceE----EEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLK----DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~----~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i 109 (210)
..+.++|||+|||+.+++++|+++|.+||.|. .+.++ ++.++|||||+|.+.++|+.||+.||+..|+|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 35678999999999999999999999999984 44444 77889999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 028313 110 TVVFAEENR 118 (210)
Q Consensus 110 ~v~~a~~~~ 118 (210)
.|+|+.+..
T Consensus 98 ~v~~a~~~~ 106 (115)
T 2cpx_A 98 VIEFGKNKK 106 (115)
T ss_dssp EEEECCCCS
T ss_pred EEEEccCCC
Confidence 999998754
No 123
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=4.7e-21 Score=133.15 Aligned_cols=83 Identities=22% Similarity=0.341 Sum_probs=75.3
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||+++++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|+.||+ ||+..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 456789999999999999999999999999887 566666678899999999999999999998 999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.++.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 97654
No 124
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=2.3e-20 Score=128.55 Aligned_cols=82 Identities=22% Similarity=0.490 Sum_probs=74.8
Q ss_pred CCCCCeEEEecCCCCCCHHHHH----HHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLR----GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i 109 (210)
..+.++|||+|||..+++++|+ ++|.+||.|..|.|+. ++.++|||||+|.+.++|+.|++.|||..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999998873 56678999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 028313 110 TVVFAEENR 118 (210)
Q Consensus 110 ~v~~a~~~~ 118 (210)
.|+|+.+..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998754
No 125
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-20 Score=131.37 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=76.8
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCc---eEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGR---LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i 109 (210)
+....++|||+|||+++++++|+++|..||. |..|.|+.++. |.++|||||+|.+.++|+.||+ ||+..|+|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3466889999999999999999999999988 89999999886 9999999999999999999998 99999999999
Q ss_pred EEEEeecC
Q 028313 110 TVVFAEEN 117 (210)
Q Consensus 110 ~v~~a~~~ 117 (210)
.|.++.+.
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998653
No 126
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=5.2e-20 Score=126.83 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=71.1
Q ss_pred CCCCCeEEEecCCC-CCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 34 RDLPTSLLVRNLRH-DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 34 ~~~~~~l~V~nL~~-~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
..+.++|||+|||+ .+++++|+++|.+||.|..|.|. +|||||+|.+.++|+.||+.|||..|.|+.|.|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35678999999998 99999999999999999999986 7899999999999999999999999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
++.+..
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 998654
No 127
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.9e-20 Score=127.22 Aligned_cols=77 Identities=23% Similarity=0.312 Sum_probs=71.4
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||.++++++|+++|.+||.|..|.|+. .+|||||+|.+.++|+.||+.|||..|+|+.|.|.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34568999999999999999999999999999999883 379999999999999999999999999999999999
Q ss_pred eec
Q 028313 114 AEE 116 (210)
Q Consensus 114 a~~ 116 (210)
+++
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 875
No 128
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.7e-20 Score=124.81 Aligned_cols=77 Identities=27% Similarity=0.353 Sum_probs=69.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCc-eEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCC-eeEcCeEEEEE
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGR-LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG-YLLLGRELTVV 112 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~i~g~~i~v~ 112 (210)
...++|||+|||+++++++|+++|.+||. |..+.+. .+|||||+|.+.++|+.||+.||| ..|+|+.|.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45789999999999999999999999999 5555553 278999999999999999999999 99999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
++.++.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997654
No 129
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=124.40 Aligned_cols=80 Identities=23% Similarity=0.259 Sum_probs=72.3
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEE-EEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDI-YLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
....++|||+|||+.+++++|+++|.+||.|..| .|+.++.+ +.|||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4557899999999999999999999999999999 57776543 449999999999999999999999999999999
Q ss_pred EeecC
Q 028313 113 FAEEN 117 (210)
Q Consensus 113 ~a~~~ 117 (210)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99875
No 130
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7.2e-20 Score=129.37 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=71.2
Q ss_pred CCCCCeEEEecCCCC-CCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCC--eeEcCeEEE
Q 028313 34 RDLPTSLLVRNLRHD-CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG--YLLLGRELT 110 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~-~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~i~g~~i~ 110 (210)
..+.++|||+|||++ +++++|+++|.+||.|..|.|+.. +|||||+|++.++|+.||+.|++ ..|+|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 999999999999999999999854 79999999999999999998864 569999999
Q ss_pred EEEeecCC
Q 028313 111 VVFAEENR 118 (210)
Q Consensus 111 v~~a~~~~ 118 (210)
|+||+...
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997654
No 131
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=123.02 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=69.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
....+|||+|||+++++++|+++|.+||.|..| +.++.++. ||||+|.+.++|++||+ ||+..|+|+.|.|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456799999999999999999999999999987 44544554 99999999999999998 9999999999999988
Q ss_pred ecCC
Q 028313 115 EENR 118 (210)
Q Consensus 115 ~~~~ 118 (210)
....
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 6543
No 132
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=4e-20 Score=123.39 Aligned_cols=73 Identities=27% Similarity=0.513 Sum_probs=67.7
Q ss_pred CCeEEEecCCCCC------CHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCe-EE
Q 028313 37 PTSLLVRNLRHDC------RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR-EL 109 (210)
Q Consensus 37 ~~~l~V~nL~~~~------te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~-~i 109 (210)
.++|||+|||..+ ++++|+++|.+||.|..|.|+ ..+|.++|||||+|.+.++|+.||+.|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 35889999999999999999999999999999999 88
Q ss_pred EE
Q 028313 110 TV 111 (210)
Q Consensus 110 ~v 111 (210)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 133
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=4.5e-20 Score=128.16 Aligned_cols=76 Identities=30% Similarity=0.595 Sum_probs=71.6
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEeecC
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 117 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~~~ 117 (210)
++|||+|||+++++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|+.||+.||+..|+|+.|.|+++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 4899999999999999999999999999999999999865
Q ss_pred C
Q 028313 118 R 118 (210)
Q Consensus 118 ~ 118 (210)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 134
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=124.86 Aligned_cols=80 Identities=19% Similarity=0.372 Sum_probs=72.4
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||+.+++++|+++|.+||.|..| ..++.++|||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999988766 23678899999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 97654
No 135
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=2.3e-20 Score=122.51 Aligned_cols=75 Identities=25% Similarity=0.352 Sum_probs=71.4
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
+|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+ +++..|+|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999998899999999999999999999997 4899999999999875
No 136
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=1.8e-19 Score=128.03 Aligned_cols=80 Identities=30% Similarity=0.520 Sum_probs=73.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
++.++|||+|||+.+++++|.++|.+||.|..|.|+.+ +..+|||||+|.+.++|+.||+.|||..|+|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45789999999999999999999999999999999865 455899999999999999999999999999999999999
Q ss_pred ecC
Q 028313 115 EEN 117 (210)
Q Consensus 115 ~~~ 117 (210)
.+.
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 753
No 137
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=128.69 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=71.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEee
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 115 (210)
..++|||+|||+.+++++|+++|.+||.|..|.|+.. ++||||+|.+.++|+.||+.|||..|+|+.|.|+||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3679999999999999999999999999999998743 7899999999999999999999999999999999997
Q ss_pred cCC
Q 028313 116 ENR 118 (210)
Q Consensus 116 ~~~ 118 (210)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 643
No 138
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=3.3e-21 Score=137.33 Aligned_cols=85 Identities=28% Similarity=0.368 Sum_probs=79.3
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEE--------EEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEc
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKD--------IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 105 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 105 (210)
..+.++|||+|||+.+++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|+.||+.||+..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 355789999999999999999999999999998 889988888999999999999999999999999999999
Q ss_pred CeEEEEEEeecCC
Q 028313 106 GRELTVVFAEENR 118 (210)
Q Consensus 106 g~~i~v~~a~~~~ 118 (210)
|+.|.|+++.++.
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999997654
No 139
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-18 Score=119.87 Aligned_cols=77 Identities=29% Similarity=0.424 Sum_probs=70.3
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
..+.++|||+|| ++++++|+++|.+||.|..|.|. ..+|||||+|.+.++|+.||+.||+..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 356789999996 89999999999999999999986 3479999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 97654
No 140
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=4.2e-19 Score=139.28 Aligned_cols=83 Identities=25% Similarity=0.383 Sum_probs=77.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|++..+.|+.|.|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecC
Q 028313 115 EEN 117 (210)
Q Consensus 115 ~~~ 117 (210)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 141
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=2.6e-19 Score=126.23 Aligned_cols=75 Identities=25% Similarity=0.498 Sum_probs=70.1
Q ss_pred CCCCeEEEecCCCC-CCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 35 DLPTSLLVRNLRHD-CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 35 ~~~~~l~V~nL~~~-~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
...++|||+|||+. +++++|+++|.+||.|..|.|. +|||||+|.+.++|+.||+.||+..|+|+.|.|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH--------KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE--------TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 44689999999999 9999999999999999999983 89999999999999999999999999999999999
Q ss_pred eecC
Q 028313 114 AEEN 117 (210)
Q Consensus 114 a~~~ 117 (210)
+...
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9753
No 142
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=4.8e-20 Score=136.01 Aligned_cols=87 Identities=26% Similarity=0.436 Sum_probs=73.6
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEE--EecC---CCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIY--LPRD---YYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~--i~~~---~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 108 (210)
..+.++|||+|||+.+++++|+++|.+||.|..|. ++.+ ..+|.++|||||+|.+.++|+.||+.|||..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 35678999999999999999999999999887641 1111 237888999999999999999999999999999999
Q ss_pred EEEEEeecCCCC
Q 028313 109 LTVVFAEENRKK 120 (210)
Q Consensus 109 i~v~~a~~~~~~ 120 (210)
|.|++|.....+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999765443
No 143
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=129.54 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=74.0
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCce----EEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRL----KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i----~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i 109 (210)
....++|||+|||+++++++|+++|.+||.| ..|.|+.+. +|.++|||||+|.+.++|++||+. |+..|.|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999875 688888884 899999999999999999999976 9999999999
Q ss_pred EEEEeecC
Q 028313 110 TVVFAEEN 117 (210)
Q Consensus 110 ~v~~a~~~ 117 (210)
.|..+..+
T Consensus 98 ~V~~a~~~ 105 (123)
T 2dha_A 98 ELFRSTAA 105 (123)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99988643
No 144
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.79 E-value=4.9e-20 Score=135.38 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=74.6
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
.....++|||+|||+++++++|+++|.+|| |+.|.|+.++. +.++|||||+|.+.++|++|| .||+..|+|+.|+|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 345678999999999999999999999999 77999999975 999999999999999999999 889999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
++....
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 987654
No 145
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.79 E-value=1.5e-19 Score=125.66 Aligned_cols=81 Identities=21% Similarity=0.434 Sum_probs=75.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
...++|||+|||+.+++++|+++|.+||.|..|.|+.++ +|.++|||||+|.+.++|+.||+ ++..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 446899999999999999999999999999999999998 99999999999999999999997 999999999999999
Q ss_pred ecCC
Q 028313 115 EENR 118 (210)
Q Consensus 115 ~~~~ 118 (210)
..+.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 8654
No 146
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.1e-18 Score=130.46 Aligned_cols=82 Identities=33% Similarity=0.465 Sum_probs=78.2
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||..+++++|+++|.+||.|..|.++.++.+|.++|||||+|.+.++|+.|++.|||..|+|+.|.|.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 35577999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ee
Q 028313 114 AE 115 (210)
Q Consensus 114 a~ 115 (210)
|+
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 85
No 147
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.5e-19 Score=126.75 Aligned_cols=80 Identities=15% Similarity=0.281 Sum_probs=72.8
Q ss_pred CCeEEEecC----CCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecC----HHH----HHHHHH--hhCCe
Q 028313 37 PTSLLVRNL----RHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PAD----AADAKY--HMDGY 102 (210)
Q Consensus 37 ~~~l~V~nL----~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~----a~~A~~--~l~g~ 102 (210)
+++|||+|| |+.|++++|+++|..||+|..|.++.|+.||.++|||||+|.+ .++ |..|++ .|+|.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 579999999 9999999999999999999999999999999999999999995 333 788888 78999
Q ss_pred eEcCeEEEEEEeec
Q 028313 103 LLLGRELTVVFAEE 116 (210)
Q Consensus 103 ~i~g~~i~v~~a~~ 116 (210)
.|+|..|+|++...
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998754
No 148
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.3e-19 Score=126.16 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=70.8
Q ss_pred CCCCCeEEE--ecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeE-----cC
Q 028313 34 RDLPTSLLV--RNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL-----LG 106 (210)
Q Consensus 34 ~~~~~~l~V--~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i-----~g 106 (210)
.++..+||| +||++.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.|||..| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345778999 779999999999999999999999988743 78999999999999999999999998 68
Q ss_pred eEEEEEEeecCC
Q 028313 107 RELTVVFAEENR 118 (210)
Q Consensus 107 ~~i~v~~a~~~~ 118 (210)
.+|.|.|+....
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 999999997544
No 149
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=2.7e-19 Score=129.19 Aligned_cols=81 Identities=22% Similarity=0.225 Sum_probs=73.2
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceE--EEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLK--DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 110 (210)
.....++|||+|||+++++++|+++|.+| .|. .|.|+.++. |.++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999999999 677 899999886 9999999999999999999997 477999999999
Q ss_pred EEEeec
Q 028313 111 VVFAEE 116 (210)
Q Consensus 111 v~~a~~ 116 (210)
|.++..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998854
No 150
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=1.4e-18 Score=130.07 Aligned_cols=82 Identities=35% Similarity=0.631 Sum_probs=78.0
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEeec
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~~ 116 (210)
.++|||+|||..+++++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|+.|++.|+|..|.|..|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred CC
Q 028313 117 NR 118 (210)
Q Consensus 117 ~~ 118 (210)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 151
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=6.2e-19 Score=131.03 Aligned_cols=81 Identities=33% Similarity=0.632 Sum_probs=74.8
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
.....++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999876 38999999999999999999999999999999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
|+.++.
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 997653
No 152
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=1.5e-18 Score=125.57 Aligned_cols=78 Identities=26% Similarity=0.367 Sum_probs=70.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceE-EEEEecCHHHHHHHHHhhCCeeEcC--eEEEEE
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF-GFVQYIDPADAADAKYHMDGYLLLG--RELTVV 112 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~i~g--~~i~v~ 112 (210)
.-..|||+||++.+++++|+++|.+||.|..|.|+... +|| |||+|.+.++|+.|++.|||..|.| ..|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34567899999999999999999999999999887543 677 9999999999999999999999998 899999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
|++...
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998654
No 153
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.78 E-value=9.2e-19 Score=118.59 Aligned_cols=75 Identities=21% Similarity=0.390 Sum_probs=69.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEee
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 115 (210)
..++|||+|||+.+++++|+++|.+| .|..|.|. ..+|||||+|.+.++|+.||+.|||..|+|+.|.|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46799999999999999999999999 99999885 448999999999999999999999999999999999996
Q ss_pred cC
Q 028313 116 EN 117 (210)
Q Consensus 116 ~~ 117 (210)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 154
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.78 E-value=9.8e-19 Score=131.30 Aligned_cols=83 Identities=27% Similarity=0.438 Sum_probs=78.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEee
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 115 (210)
+.++|||+|||.++++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.|++.|+|..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred cCC
Q 028313 116 ENR 118 (210)
Q Consensus 116 ~~~ 118 (210)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 155
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=123.52 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=69.4
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCC---CCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYT---GEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELT 110 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~ 110 (210)
....++|||+|||+++++++|+++|.+||.|. +.++.+..+ |.++|||||+|.+.++|+.||+.|+ .|+|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34578999999999999999999999999999 888887766 7999999999999999999999884 47777777
Q ss_pred EEEeec
Q 028313 111 VVFAEE 116 (210)
Q Consensus 111 v~~a~~ 116 (210)
+..+..
T Consensus 82 ~~~~~~ 87 (114)
T 2dnl_A 82 CVSSPT 87 (114)
T ss_dssp EECCSS
T ss_pred eccCCC
Confidence 765543
No 156
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=2.3e-18 Score=123.85 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=66.7
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceE-EEEEecCHHHHHHHHHhhCCeeEcC--eEEEEEEee
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF-GFVQYIDPADAADAKYHMDGYLLLG--RELTVVFAE 115 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~i~g--~~i~v~~a~ 115 (210)
.|||+||++.+++++|+++|++||.|..|.|+.. .|| |||+|.+.++|+.|++.|||..|.| ..|.|+||+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4679999999999999999999999999988642 376 9999999999999999999999988 589999998
Q ss_pred cCC
Q 028313 116 ENR 118 (210)
Q Consensus 116 ~~~ 118 (210)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 654
No 157
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=1.8e-18 Score=135.07 Aligned_cols=84 Identities=29% Similarity=0.451 Sum_probs=79.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ecCC
Q 028313 115 EENR 118 (210)
Q Consensus 115 ~~~~ 118 (210)
.+..
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 158
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.77 E-value=2.3e-18 Score=117.02 Aligned_cols=77 Identities=25% Similarity=0.455 Sum_probs=62.7
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCe--eEcCeEEE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY--LLLGRELT 110 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~i~g~~i~ 110 (210)
...++++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ |++. .+.|..|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3467899999999999999999999999999999999875 48999999999999983 3454 45699999
Q ss_pred EEEeecCC
Q 028313 111 VVFAEENR 118 (210)
Q Consensus 111 v~~a~~~~ 118 (210)
|.+|.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99997654
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.76 E-value=3.1e-18 Score=131.96 Aligned_cols=85 Identities=25% Similarity=0.370 Sum_probs=80.6
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.|++.|||..|+|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 46678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.+..
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98754
No 160
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.76 E-value=3.2e-18 Score=129.07 Aligned_cols=81 Identities=25% Similarity=0.369 Sum_probs=77.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.|++.|||..|+|+.|.|+||
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred e
Q 028313 115 E 115 (210)
Q Consensus 115 ~ 115 (210)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 161
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=1.5e-18 Score=130.08 Aligned_cols=80 Identities=24% Similarity=0.314 Sum_probs=70.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcC--eEEEEE
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG--RELTVV 112 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g--~~i~v~ 112 (210)
....+|||+||++.+++++|+++|.+||+|..|.|... ..+|||||+|.+.++|+.|++.|||..|.| ..|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 33456899999999999999999999999999998643 247899999999999999999999999966 999999
Q ss_pred EeecCC
Q 028313 113 FAEENR 118 (210)
Q Consensus 113 ~a~~~~ 118 (210)
|++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998653
No 162
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=3.8e-18 Score=131.24 Aligned_cols=84 Identities=29% Similarity=0.375 Sum_probs=77.3
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
.+..++|||+|||+++++++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|+.||+. ++..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 45678999999999999999999999999999999999998999999999999999999999965 99999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+....
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 87543
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=5.2e-18 Score=130.52 Aligned_cols=84 Identities=23% Similarity=0.331 Sum_probs=75.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..+|.++|||||+|.+.++|++||+. ++..|+|+.|.|.+|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 4568999999999999999999999999999999999988999999999999999999999976 799999999999999
Q ss_pred ecCCC
Q 028313 115 EENRK 119 (210)
Q Consensus 115 ~~~~~ 119 (210)
.++..
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 87653
No 164
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=116.59 Aligned_cols=74 Identities=26% Similarity=0.362 Sum_probs=65.4
Q ss_pred CCCe-EEEecCCCCCCHHH----HHHHhccCC-ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEE
Q 028313 36 LPTS-LLVRNLRHDCRPED----LRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (210)
Q Consensus 36 ~~~~-l~V~nL~~~~te~~----l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i 109 (210)
+..| |||+|||+.+++++ |.++|.+|| +|..| ++ |+|||+|.+.++|+.|++.|+|..|.|++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3445 99999999999987 558999995 99887 22 999999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 028313 110 TVVFAEENRK 119 (210)
Q Consensus 110 ~v~~a~~~~~ 119 (210)
+|+||+....
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999987653
No 165
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.75 E-value=4.7e-18 Score=132.77 Aligned_cols=78 Identities=15% Similarity=0.293 Sum_probs=72.5
Q ss_pred CCCeEEEecCC-CCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 36 LPTSLLVRNLR-HDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 36 ~~~~l~V~nL~-~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
+.++|||+||+ +.+++++|.++|.+||.|..|.|+.+. +|||||+|.+.++|+.||+.|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 899999999999999999999998764 799999999999999999999999999999999999
Q ss_pred ecCC
Q 028313 115 EENR 118 (210)
Q Consensus 115 ~~~~ 118 (210)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 166
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=1.9e-18 Score=129.65 Aligned_cols=81 Identities=27% Similarity=0.384 Sum_probs=76.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEee
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 115 (210)
...+|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|++|++ |++..|+|+.|.|.||.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35689999999999999999999999999999999998899999999999999999999997 89999999999999997
Q ss_pred cC
Q 028313 116 EN 117 (210)
Q Consensus 116 ~~ 117 (210)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.75 E-value=2e-18 Score=135.43 Aligned_cols=81 Identities=23% Similarity=0.372 Sum_probs=74.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEee
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 115 (210)
...+|||+|||+.+++++|+++|.+||.|..|.|+.+. +..+|||||+|.+.++|+.||+.|||..|+|+.|.|.+|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35689999999999999999999999999999998874 4468999999999999999999999999999999999997
Q ss_pred cCC
Q 028313 116 ENR 118 (210)
Q Consensus 116 ~~~ 118 (210)
++.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 643
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=4.5e-18 Score=114.59 Aligned_cols=72 Identities=19% Similarity=0.376 Sum_probs=66.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccC----C-------ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCee
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQF----G-------RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 103 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 103 (210)
.+..+|||+|||+++++++|+++|.+| | .|..|.++.+ +|||||+|.+.++|+.|| .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999998865 799999999999999999 999999
Q ss_pred EcCeEEEEEE
Q 028313 104 LLGRELTVVF 113 (210)
Q Consensus 104 i~g~~i~v~~ 113 (210)
|+|+.|.|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999863
No 169
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.74 E-value=5.8e-18 Score=121.55 Aligned_cols=77 Identities=29% Similarity=0.424 Sum_probs=70.3
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|| ++++++|+++|.+||.|..|.|. ..+|||||+|.+.++|+.||+.|||..|+|+.|.|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999996 69999999999999999999987 3489999999999999999999999999999999999
Q ss_pred eecCC
Q 028313 114 AEENR 118 (210)
Q Consensus 114 a~~~~ 118 (210)
+.+..
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 98654
No 170
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.9e-18 Score=114.90 Aligned_cols=77 Identities=23% Similarity=0.415 Sum_probs=66.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
...++|||+|||+++++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|..|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 45789999999999999999999999999999999865 489999999999999865422 35679999999998
Q ss_pred ecCC
Q 028313 115 EENR 118 (210)
Q Consensus 115 ~~~~ 118 (210)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 171
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.2e-17 Score=124.75 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=74.2
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEeecC
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 117 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~~~ 117 (210)
.+|||+|||.++++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|+.|++.|+|..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999887 5778999999999999999999999999999999999998765
Q ss_pred C
Q 028313 118 R 118 (210)
Q Consensus 118 ~ 118 (210)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 172
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.74 E-value=1.5e-17 Score=124.81 Aligned_cols=80 Identities=31% Similarity=0.491 Sum_probs=76.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcC--eEEEEE
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG--RELTVV 112 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g--~~i~v~ 112 (210)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.|++.|||..|.| ..|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 457899999999999999999999999999999999998899999999999999999999999999999988 999999
Q ss_pred Ee
Q 028313 113 FA 114 (210)
Q Consensus 113 ~a 114 (210)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=6.5e-18 Score=131.86 Aligned_cols=82 Identities=27% Similarity=0.404 Sum_probs=74.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEee
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 115 (210)
..++|||+|||.++++++|+++|.+||.|..|.|+.++.++..+|||||+|.+.++|+.||+.|++..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999998876
Q ss_pred cC
Q 028313 116 EN 117 (210)
Q Consensus 116 ~~ 117 (210)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 174
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.73 E-value=2.8e-17 Score=115.02 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=72.5
Q ss_pred CCCCeEEEecCCC-----CCCHHHHHHHhccCCceEEEEEecCCCC-CCcceEEEEEecCHHHHHHHHHhhCCeeEcCeE
Q 028313 35 DLPTSLLVRNLRH-----DCRPEDLRGPFGQFGRLKDIYLPRDYYT-GEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (210)
Q Consensus 35 ~~~~~l~V~nL~~-----~~te~~l~~~f~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 108 (210)
.+..+|+|.||.. +.++++|+++|++||.|..|.|+.++.+ +.++|||||+|.+.++|++|++.|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4577999999963 2368999999999999999999987644 678999999999999999999999999999999
Q ss_pred EEEEEeec
Q 028313 109 LTVVFAEE 116 (210)
Q Consensus 109 i~v~~a~~ 116 (210)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=2.2e-17 Score=123.48 Aligned_cols=80 Identities=29% Similarity=0.424 Sum_probs=74.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeE--EEEE
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE--LTVV 112 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~--i~v~ 112 (210)
....+|||+|||..+++++|+++|.+||.|..|.++.+..+|.++|||||+|.+.++|+.|++.|||..|.|.. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 34678999999999999999999999999999999999889999999999999999999999999999999964 8888
Q ss_pred Ee
Q 028313 113 FA 114 (210)
Q Consensus 113 ~a 114 (210)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 176
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.72 E-value=7.1e-18 Score=134.09 Aligned_cols=81 Identities=26% Similarity=0.309 Sum_probs=71.6
Q ss_pred CCCCCCeEEEecCCCCC---------CHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCee
Q 028313 33 GRDLPTSLLVRNLRHDC---------RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 103 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~---------te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 103 (210)
.....++|||+||+..+ ++++|.++|.+||+|+.|.|+.+ +|||||+|.+.++|+.|+++|+|..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 45678899999999998 79999999999999999999854 8999999999999999999999999
Q ss_pred E------------cCeEEEEEEeecCCC
Q 028313 104 L------------LGRELTVVFAEENRK 119 (210)
Q Consensus 104 i------------~g~~i~v~~a~~~~~ 119 (210)
| .|..|.|.||+....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 9 899999999986543
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.72 E-value=4.7e-17 Score=132.34 Aligned_cols=83 Identities=23% Similarity=0.486 Sum_probs=75.9
Q ss_pred CCCCCCeEEEecCCCCCCHHHHH----HHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeE
Q 028313 33 GRDLPTSLLVRNLRHDCRPEDLR----GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 108 (210)
Q Consensus 33 ~~~~~~~l~V~nL~~~~te~~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 108 (210)
+..+.++|||+|||+++++++|+ ++|.+||.|..|.|+. ++..+|||||+|.+.++|+.||+.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45678899999999999999966 8999999999998875 6788999999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 028313 109 LTVVFAEENR 118 (210)
Q Consensus 109 i~v~~a~~~~ 118 (210)
|.|+|+....
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997544
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=3e-17 Score=123.82 Aligned_cols=80 Identities=25% Similarity=0.401 Sum_probs=73.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEc---CeEEEE
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL---GRELTV 111 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~---g~~i~v 111 (210)
....+|||+|||..+++++|+++|.+||.|..|.|+.+. +|.++|||||+|.+.++|+.||+.|||..+. +++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356899999999999999999999999999999999886 6889999999999999999999999998776 489999
Q ss_pred EEee
Q 028313 112 VFAE 115 (210)
Q Consensus 112 ~~a~ 115 (210)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9984
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.71 E-value=4.3e-17 Score=123.33 Aligned_cols=78 Identities=19% Similarity=0.394 Sum_probs=71.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
...++|||+|||..+++++|+++|.+||.|..+ ..++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.||
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 456899999999999999999999999988766 347888999999999999999999999999999999999999
Q ss_pred ecC
Q 028313 115 EEN 117 (210)
Q Consensus 115 ~~~ 117 (210)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=4.5e-17 Score=122.83 Aligned_cols=82 Identities=21% Similarity=0.370 Sum_probs=74.2
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCC--CcceEEEEEecCHHHHHHHHHhhCCeeEc---CeEEEE
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTG--EPRGFGFVQYIDPADAADAKYHMDGYLLL---GRELTV 111 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~i~---g~~i~v 111 (210)
.++|||+|||+++++++|+++|.+||.|..|.|+.++.++ .++|||||+|.+.++|+.|++.|++..+. +..|.|
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 5799999999999999999999999999999999988776 88999999999999999999999998776 577888
Q ss_pred EEeecCC
Q 028313 112 VFAEENR 118 (210)
Q Consensus 112 ~~a~~~~ 118 (210)
.++....
T Consensus 83 ~~~~~~~ 89 (175)
T 3nmr_A 83 KPADSEK 89 (175)
T ss_dssp EECGGGC
T ss_pred ccccccc
Confidence 8876544
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.70 E-value=8.1e-17 Score=124.58 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=71.7
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEeec
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~~ 116 (210)
.++|||+|||+++++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|+.||+.++ ..|+|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 4789999999999999999999999999999999876 58899999999999999999997654 599999999998764
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=3.1e-17 Score=123.01 Aligned_cols=79 Identities=25% Similarity=0.483 Sum_probs=73.0
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEee
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 115 (210)
+.++|||+|||+++++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+. +..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 367999999999999999999999999999999999988999999999999999999999974 578999999998875
Q ss_pred c
Q 028313 116 E 116 (210)
Q Consensus 116 ~ 116 (210)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.70 E-value=9.1e-17 Score=131.30 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=76.2
Q ss_pred CCCCCeEEEecCCCC-CCHHHHHHHhccCCceEEEEEecCCC-CCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 34 RDLPTSLLVRNLRHD-CRPEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~-~te~~l~~~f~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
....++|||+|||.. +++++|+++|.+||.|..|.|+.+.. ||.++|||||+|.+.++|+.|| .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 356789999999999 99999999999999999999998875 5899999999999999999999 99999999999999
Q ss_pred EEeecC
Q 028313 112 VFAEEN 117 (210)
Q Consensus 112 ~~a~~~ 117 (210)
.||.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999864
No 184
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.4e-16 Score=110.63 Aligned_cols=81 Identities=26% Similarity=0.430 Sum_probs=69.3
Q ss_pred CCCCCeEEEecCCCCCC-----------HHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCe
Q 028313 34 RDLPTSLLVRNLRHDCR-----------PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~t-----------e~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 102 (210)
..+..+|+|.||..... +++|+++|.+||.|..|.|+ ++ .++|||||+|.+.++|+.||+.|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 35678999999954432 58999999999999999663 33 36899999999999999999999999
Q ss_pred eEcCeEEEEEEeecCC
Q 028313 103 LLLGRELTVVFAEENR 118 (210)
Q Consensus 103 ~i~g~~i~v~~a~~~~ 118 (210)
.|+|+.|.|+++.+..
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999997643
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=1.3e-16 Score=129.76 Aligned_cols=76 Identities=21% Similarity=0.352 Sum_probs=71.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEc-CeEEEEEE
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL-GRELTVVF 113 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~i~v~~ 113 (210)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. +|||||+|.+.++|+.||+.|||..|+ |+.|+|.|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 456889999999999999999999999999999998654 689999999999999999999999999 99999999
Q ss_pred ee
Q 028313 114 AE 115 (210)
Q Consensus 114 a~ 115 (210)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=5.3e-17 Score=128.61 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=73.7
Q ss_pred CCCCCeEEEecCCC-CCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 34 RDLPTSLLVRNLRH-DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 34 ~~~~~~l~V~nL~~-~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
..+.++|||+|||+ .+++++|+++|.+||.|..|.|+.++ +|||||+|.+.++|+.||+.|+|..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35578999999999 99999999999999999999999775 7899999999999999999999999999999999
Q ss_pred EeecC
Q 028313 113 FAEEN 117 (210)
Q Consensus 113 ~a~~~ 117 (210)
++...
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99765
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.68 E-value=3.1e-16 Score=127.59 Aligned_cols=83 Identities=28% Similarity=0.409 Sum_probs=78.8
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEee
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 115 (210)
..++|||+|||+.+++++|.++|..||.|..|.|+.+..+|.++|||||+|.+.++|+.|++.|+|..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred cCC
Q 028313 116 ENR 118 (210)
Q Consensus 116 ~~~ 118 (210)
+..
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 654
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.68 E-value=2.1e-16 Score=128.62 Aligned_cols=85 Identities=21% Similarity=0.229 Sum_probs=78.8
Q ss_pred CCCCeEEEecCCCCC-CHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 35 DLPTSLLVRNLRHDC-RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~-te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
...++|||+|||..+ ++++|+++|..||.|..|.|+.+. +|.++|||||+|.+.++|+.|++.|||..|+|+.|.|.|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 457899999999995 999999999999999999998886 789999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 028313 114 AEENRKK 120 (210)
Q Consensus 114 a~~~~~~ 120 (210)
+.++...
T Consensus 261 a~~~~~~ 267 (284)
T 3smz_A 261 CAPGPPG 267 (284)
T ss_dssp CCSSSCH
T ss_pred ecCCCcc
Confidence 9876543
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=3.5e-17 Score=123.82 Aligned_cols=85 Identities=21% Similarity=0.341 Sum_probs=73.7
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEE
Q 028313 32 RGRDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 111 (210)
Q Consensus 32 ~~~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v 111 (210)
......++|||+|||..+++++|+++|..||.|.. .++.+..++.++|||||+|.+.++|+.|| .|||..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 35567889999999999999999999999998766 23344457788999999999999999999 59999999999999
Q ss_pred EEeecCC
Q 028313 112 VFAEENR 118 (210)
Q Consensus 112 ~~a~~~~ 118 (210)
.++....
T Consensus 86 ~~~~~~~ 92 (175)
T 1fje_B 86 EKPKGRD 92 (175)
T ss_dssp ECCCCSS
T ss_pred ecCCCcc
Confidence 9997654
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=123.50 Aligned_cols=77 Identities=25% Similarity=0.386 Sum_probs=72.3
Q ss_pred CCeEEEecCCC-CCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEee
Q 028313 37 PTSLLVRNLRH-DCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (210)
Q Consensus 37 ~~~l~V~nL~~-~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 115 (210)
.++|||+|||+ .+++++|+++|.+||.|..|.|+.++ +|||||+|.+.++|+.||+.|||..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998775 7899999999999999999999999999999999997
Q ss_pred cCC
Q 028313 116 ENR 118 (210)
Q Consensus 116 ~~~ 118 (210)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=3.3e-16 Score=122.23 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=69.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCce--EEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCe----E
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRL--KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR----E 108 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~----~ 108 (210)
.+..+|||+|||+.+++++|+++|.+||.| ..|.|+.+. +..+|||||+|.+.++|..||..|||..|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 456789999999999999999999999999 888888664 45569999999999999999999999999886 6
Q ss_pred EEEEEe
Q 028313 109 LTVVFA 114 (210)
Q Consensus 109 i~v~~a 114 (210)
|.|+||
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777776
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=7.8e-16 Score=124.18 Aligned_cols=77 Identities=34% Similarity=0.567 Sum_probs=71.5
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
....++|||+|||+++|+++|.++|..||.|..|.|..+ +|||||+|.+.++|+.||..|+|..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 355679999999999999999999999999999999754 79999999999999999999999999999999999
Q ss_pred eec
Q 028313 114 AEE 116 (210)
Q Consensus 114 a~~ 116 (210)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=2.9e-16 Score=121.19 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=71.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCC-ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEc-CeEEEEE
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL-GRELTVV 112 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~i~v~ 112 (210)
.+.++|||+|||..+++++|+++|.+|| .|..|.|+.+. +|||||+|.+.++|+.|++.|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 99999986543 789999999999999999999999999 9999999
Q ss_pred EeecC
Q 028313 113 FAEEN 117 (210)
Q Consensus 113 ~a~~~ 117 (210)
|++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99753
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=5.5e-16 Score=122.74 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=71.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCC-ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEc-CeEEEEE
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL-GRELTVV 112 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~i~v~ 112 (210)
.+.++|||+|||..+++++|+++|.+|| .|..|.|+... +|||||+|.+.++|+.||+.|||..|. |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-----TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-----CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4578999999999999999999999999 99999986532 789999999999999999999999999 9999999
Q ss_pred EeecC
Q 028313 113 FAEEN 117 (210)
Q Consensus 113 ~a~~~ 117 (210)
|+++.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99753
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.63 E-value=1.1e-15 Score=106.93 Aligned_cols=81 Identities=21% Similarity=0.285 Sum_probs=70.2
Q ss_pred CCCeEEEecC--CCCCC--------HHHHHHHhccCCceEEEEEecCCCC--CCcceEEEEEecCHHHHHHHHHhhCCee
Q 028313 36 LPTSLLVRNL--RHDCR--------PEDLRGPFGQFGRLKDIYLPRDYYT--GEPRGFGFVQYIDPADAADAKYHMDGYL 103 (210)
Q Consensus 36 ~~~~l~V~nL--~~~~t--------e~~l~~~f~~~G~i~~v~i~~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~g~~ 103 (210)
+..+|+|.|+ +.++. +++|+++|++||.|..|.|+.+..+ +..+|+|||+|.+.++|++|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678999998 33333 3799999999999999999987654 3578999999999999999999999999
Q ss_pred EcCeEEEEEEeec
Q 028313 104 LLGRELTVVFAEE 116 (210)
Q Consensus 104 i~g~~i~v~~a~~ 116 (210)
|+|+.|.|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999864
No 196
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.62 E-value=1.2e-15 Score=124.51 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=70.9
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCC-ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEe
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a 114 (210)
..++|||+|||+.+++++|.++|..|| .|..|.|+.+.. +.++|||||+|.+.++|+.||+.|+|..|+|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 999999988764 778999999999999999999999999999999999999
Q ss_pred ecCC
Q 028313 115 EENR 118 (210)
Q Consensus 115 ~~~~ 118 (210)
.+..
T Consensus 195 ~~~~ 198 (292)
T 2ghp_A 195 NPLE 198 (292)
T ss_dssp CCC-
T ss_pred CCCc
Confidence 7654
No 197
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.62 E-value=2.2e-15 Score=107.47 Aligned_cols=81 Identities=17% Similarity=0.289 Sum_probs=70.3
Q ss_pred CCCeEEEecCCC--CC---CHHHHHHHhccCCceEEEEEecCCC----CCCcceEEEEEecCHHHHHHHHHhhCCeeEcC
Q 028313 36 LPTSLLVRNLRH--DC---RPEDLRGPFGQFGRLKDIYLPRDYY----TGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 106 (210)
Q Consensus 36 ~~~~l~V~nL~~--~~---te~~l~~~f~~~G~i~~v~i~~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g 106 (210)
+..+|+|.|+-. ++ .+++|+++|++||.|..|.|+.+.. ++..+|+|||+|.+.++|++|++.|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467899999832 22 3789999999999999999988754 35667999999999999999999999999999
Q ss_pred eEEEEEEeec
Q 028313 107 RELTVVFAEE 116 (210)
Q Consensus 107 ~~i~v~~a~~ 116 (210)
+.|.|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.61 E-value=3e-16 Score=109.61 Aligned_cols=72 Identities=13% Similarity=0.300 Sum_probs=63.0
Q ss_pred EecCCCCCCHHHHHHHh------------ccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEE
Q 028313 42 VRNLRHDCRPEDLRGPF------------GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (210)
Q Consensus 42 V~nL~~~~te~~l~~~f------------~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i 109 (210)
+.||++.+++++|+++| ++||.|..|.|+.+. ++.++|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666667777776666 999999999999876 47889999999999999999999999999999999
Q ss_pred EEEEe
Q 028313 110 TVVFA 114 (210)
Q Consensus 110 ~v~~a 114 (210)
.|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=1.8e-15 Score=113.87 Aligned_cols=75 Identities=19% Similarity=0.370 Sum_probs=67.4
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccC----C-------ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeE
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQF----G-------RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i 104 (210)
+.++|||+|||+++++++|+++|.+| | .|..+.+..+ +|||||+|.+.++|+.|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45799999999999999999999999 6 6777777644 899999999999999999 8999999
Q ss_pred cCeEEEEEEeecC
Q 028313 105 LGRELTVVFAEEN 117 (210)
Q Consensus 105 ~g~~i~v~~a~~~ 117 (210)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987654
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=2.6e-15 Score=115.45 Aligned_cols=76 Identities=17% Similarity=0.370 Sum_probs=66.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccC----C-------ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeE
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQF----G-------RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i 104 (210)
..++|||+|||+.+++++|+++|.+| | .|..+.+. ..+|||||+|.+.++|+.|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 56666654 34899999999999999999 8999999
Q ss_pred cCeEEEEEEeecCC
Q 028313 105 LGRELTVVFAEENR 118 (210)
Q Consensus 105 ~g~~i~v~~a~~~~ 118 (210)
+|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQ 89 (198)
T ss_dssp TTEEEEEECCCCCC
T ss_pred cCceEEEeCCCCCC
Confidence 99999999987643
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.60 E-value=3.1e-15 Score=120.66 Aligned_cols=81 Identities=30% Similarity=0.356 Sum_probs=73.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhC-CeeEc---CeEEEE
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD-GYLLL---GRELTV 111 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~i~---g~~i~v 111 (210)
..++|||+|||..+++++|+++|..||.|..|.|+.+ .+|.++|||||+|.+.++|..||..|| +..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999988 489999999999999999999999995 45554 899999
Q ss_pred EEeecC
Q 028313 112 VFAEEN 117 (210)
Q Consensus 112 ~~a~~~ 117 (210)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998754
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.58 E-value=4.1e-15 Score=124.04 Aligned_cols=76 Identities=21% Similarity=0.383 Sum_probs=65.9
Q ss_pred CCCCCeEEEec--CCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEc---Ce-
Q 028313 34 RDLPTSLLVRN--LRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL---GR- 107 (210)
Q Consensus 34 ~~~~~~l~V~n--L~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~---g~- 107 (210)
.++..+|||+| |++.++|++|+++|.+||+|..|.|.. .+|||||+|.+.++|++||+.|||..+. |.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 46678999999 588999999999999999999988764 3799999999999999999999999873 44
Q ss_pred -EEEEEEee
Q 028313 108 -ELTVVFAE 115 (210)
Q Consensus 108 -~i~v~~a~ 115 (210)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777774
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.1e-14 Score=97.89 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=63.2
Q ss_pred CCeEEEecCC-------CCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEE
Q 028313 37 PTSLLVRNLR-------HDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (210)
Q Consensus 37 ~~~l~V~nL~-------~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i 109 (210)
...|.|.-.. ..+++++|+++|.+||.|..|.|+. .++|||||+|.+.++|+.||+.+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 5567776543 4589999999999999999999873 5589999999999999999988554 679999
Q ss_pred EEEEeecCC
Q 028313 110 TVVFAEENR 118 (210)
Q Consensus 110 ~v~~a~~~~ 118 (210)
.|+|+.+..
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999997654
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.51 E-value=1.1e-13 Score=97.90 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=65.8
Q ss_pred CCCCeEEEecCCCCC----------CHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeE
Q 028313 35 DLPTSLLVRNLRHDC----------RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~----------te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i 104 (210)
.+..+|.|.|+-... .+++|+++|++||.|..|.|..+. .+|||||+|.+.++|++|++.|||..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 446688899873221 146889999999999999987652 489999999999999999999999999
Q ss_pred cCeEEEEEEeec
Q 028313 105 LGRELTVVFAEE 116 (210)
Q Consensus 105 ~g~~i~v~~a~~ 116 (210)
+|+.|.|.|+..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999854
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=6.4e-13 Score=94.50 Aligned_cols=79 Identities=20% Similarity=0.177 Sum_probs=70.2
Q ss_pred CCCCCCCeEEEecCCCC-CCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecC-HHHHHHHHHhhC--CeeEcCe
Q 028313 32 RGRDLPTSLLVRNLRHD-CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID-PADAADAKYHMD--GYLLLGR 107 (210)
Q Consensus 32 ~~~~~~~~l~V~nL~~~-~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~--g~~i~g~ 107 (210)
-.-..++.|||+||++. +++++|+++|.+||+|..|.|+.+. ..|||+|.+ ..+|+.|++.|+ +.+|+|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 45678999999999999 9999999999999999999999774 369999999 899999999995 6789999
Q ss_pred EEEEEEeec
Q 028313 108 ELTVVFAEE 116 (210)
Q Consensus 108 ~i~v~~a~~ 116 (210)
.+++++...
T Consensus 87 ~~~~evL~G 95 (121)
T 1owx_A 87 EVTWEVLEG 95 (121)
T ss_dssp SEEEEECCH
T ss_pred EEEEEECCC
Confidence 999987653
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-12 Score=87.71 Aligned_cols=75 Identities=20% Similarity=0.315 Sum_probs=63.2
Q ss_pred CCCeEEEecCC----CCCCH----HHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCe
Q 028313 36 LPTSLLVRNLR----HDCRP----EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 107 (210)
Q Consensus 36 ~~~~l~V~nL~----~~~te----~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~ 107 (210)
+..||+|.-++ .++.. .+|.+.|.+||+|..+.|+.+. +||+|.+.+.|.+||+ |||..|+|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 35688887766 22323 6799999999999999999653 8999999999999997 999999999
Q ss_pred EEEEEEeecCCC
Q 028313 108 ELTVVFAEENRK 119 (210)
Q Consensus 108 ~i~v~~a~~~~~ 119 (210)
.|+|+++.+...
T Consensus 77 ~LkV~lkt~dW~ 88 (91)
T 2dnr_A 77 TITIALKSPSGP 88 (91)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEeCCCCcc
Confidence 999999987653
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.5e-11 Score=82.80 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=60.7
Q ss_pred CCCCeEEEecCCCC-----C-C---HHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEc
Q 028313 35 DLPTSLLVRNLRHD-----C-R---PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 105 (210)
Q Consensus 35 ~~~~~l~V~nL~~~-----~-t---e~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 105 (210)
++..||+|.-++.. + . -.+|.+.|.+||+|..+.|+.+. +||+|.+.++|.+||+ |||..|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 34679999888632 2 2 15689999999999999999662 9999999999999997 9999999
Q ss_pred CeEEEEEEee
Q 028313 106 GRELTVVFAE 115 (210)
Q Consensus 106 g~~i~v~~a~ 115 (210)
|+.|+|++..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.11 E-value=1.8e-10 Score=90.38 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=65.7
Q ss_pred CCeEEEecCC-----CCCCHHHHHHHhccCCceEEEEEecCC----CCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCe
Q 028313 37 PTSLLVRNLR-----HDCRPEDLRGPFGQFGRLKDIYLPRDY----YTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 107 (210)
Q Consensus 37 ~~~l~V~nL~-----~~~te~~l~~~f~~~G~i~~v~i~~~~----~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~ 107 (210)
...+.+.|+- ..-.+++|.+.|.+||.|..|.|+.+. .++..+|++||+|.+.++|++|++.|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3445555542 223468999999999999999998543 3458899999999999999999999999999999
Q ss_pred EEEEEEeec
Q 028313 108 ELTVVFAEE 116 (210)
Q Consensus 108 ~i~v~~a~~ 116 (210)
.|.|.+...
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999854
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.99 E-value=2.6e-09 Score=73.44 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=67.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccC-----CceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEE
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQF-----GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i 109 (210)
+...+|-|-|||..++...|..|++.+ |.|..|.+..| .+-|+|+|.+...|-+|.-+|+|.+|.|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 457789999999999999999999999 99999999987 5679999999999999999999999999999
Q ss_pred EEEEe
Q 028313 110 TVVFA 114 (210)
Q Consensus 110 ~v~~a 114 (210)
+|.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98643
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.61 E-value=9.7e-08 Score=65.28 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=65.3
Q ss_pred CCCCeEEEecCCCCC-C----HHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEE
Q 028313 35 DLPTSLLVRNLRHDC-R----PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~-t----e~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i 109 (210)
..+++|+|+||+.++ . .+.++++|..|+++....+... -.-..|.|.+.++|.+|-..||+..|+|..|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 568899999998765 2 2577899999998888777644 3467999999999999999999999999999
Q ss_pred EEEEeecC
Q 028313 110 TVVFAEEN 117 (210)
Q Consensus 110 ~v~~a~~~ 117 (210)
+|.|+.+.
T Consensus 77 r~YFgq~~ 84 (104)
T 1wey_A 77 KLYFAQTL 84 (104)
T ss_dssp EEECCCCS
T ss_pred EEEecCCC
Confidence 99999744
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.36 E-value=5.4e-06 Score=55.61 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=62.7
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCC--CcceEEEEEecCHHHHHHHHHhhCCeeEcC-----eEEE
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTG--EPRGFGFVQYIDPADAADAKYHMDGYLLLG-----RELT 110 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~i~g-----~~i~ 110 (210)
++|.|.+||+.+||+++.+.+..+..+....++..+.+. ....-|||.|.+.+++....+.++|..|.+ ....
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 689999999999999999999999888777776555332 235679999999999999999999987643 2345
Q ss_pred EEEee
Q 028313 111 VVFAE 115 (210)
Q Consensus 111 v~~a~ 115 (210)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 67764
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.5e-05 Score=54.29 Aligned_cols=73 Identities=22% Similarity=0.129 Sum_probs=59.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccC-----CceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEE
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQF-----GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 109 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i 109 (210)
....+|.|.|||..+.++.|+-+|+.- |+|+.|... .+-|+|+|.+.+.|+.+|+. ..+.|++..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~--------~~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL--------GCGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE--------TTEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc--------CCcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 347899999999999999999999862 588888776 25689999999999999843 4678888989
Q ss_pred EEEEeec
Q 028313 110 TVVFAEE 116 (210)
Q Consensus 110 ~v~~a~~ 116 (210)
.|....+
T Consensus 77 sV~P~~~ 83 (104)
T 2dhx_A 77 SLRPAPP 83 (104)
T ss_dssp EEEECCC
T ss_pred EEEcCCC
Confidence 8866543
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.05 E-value=2.2e-05 Score=55.00 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=58.8
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcC-eEEEEE
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG-RELTVV 112 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g-~~i~v~ 112 (210)
....+.|.|.++|... ...|...|.+||.|.+..... ...+..|.|.+..+|++|| ..||..|+| -.|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEE
Confidence 4457789999999885 567788999999999887631 2568999999999999999 569999985 556666
Q ss_pred Ee
Q 028313 113 FA 114 (210)
Q Consensus 113 ~a 114 (210)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 214
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.01 E-value=2.7e-05 Score=52.56 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=59.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCC--cceEEEEEecCHHHHHHHHHhhCCeeEcC-----eE
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGE--PRGFGFVQYIDPADAADAKYHMDGYLLLG-----RE 108 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~--~~g~afV~f~~~~~a~~A~~~l~g~~i~g-----~~ 108 (210)
-.-+|.|..||+.+||+++.+.+..+-++....++..+.+.+ ...-|||.|.+.+++....+.++|..|-+ .+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 356899999999999999998888765655444443332222 23568999999999999999999988643 24
Q ss_pred EEEEEee
Q 028313 109 LTVVFAE 115 (210)
Q Consensus 109 i~v~~a~ 115 (210)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5577764
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.98 E-value=4.2e-05 Score=51.45 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=44.7
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 100 (210)
...++| ++|.++...||.++|..||.|. |.++.| ..|||.|.+.+.|..|+..|.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 345556 9999999999999999999543 555544 379999999999999998763
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.75 E-value=4.8e-05 Score=51.30 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=43.9
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 100 (210)
.++| ++|.++...||.++|..||.| .|.++.| ..|||.|.+.+.|..|+..|.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999944 4555544 379999999999999998774
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.46 E-value=0.00025 Score=50.36 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=55.4
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCceEE-EEEecC------------CCCC-CcceEEEEEecCHHHHHHHHHhhCC
Q 028313 36 LPTSLLVRNLRHDCRPEDLRGPFGQFGRLKD-IYLPRD------------YYTG-EPRGFGFVQYIDPADAADAKYHMDG 101 (210)
Q Consensus 36 ~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~-v~i~~~------------~~~g-~~~g~afV~f~~~~~a~~A~~~l~g 101 (210)
..+-|.|.++|.... ..|.+.|++||.|.+ +.+... +... ....+..|+|.+..+|++|| ..||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 456788999987665 556678999999876 222110 0000 12467899999999999999 5699
Q ss_pred eeEcCeEEEEEEee
Q 028313 102 YLLLGRELTVVFAE 115 (210)
Q Consensus 102 ~~i~g~~i~v~~a~ 115 (210)
..|.|..|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988787764
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.93 E-value=0.00049 Score=59.30 Aligned_cols=56 Identities=9% Similarity=0.261 Sum_probs=42.6
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 98 (210)
-..|||. ++..+++.+|.++|++||.|..+.+-.++ ..||.|||.+.+.++.++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 3689996 79999999999999999999999887654 57999999999998877643
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.43 E-value=0.0022 Score=46.78 Aligned_cols=33 Identities=15% Similarity=0.022 Sum_probs=26.3
Q ss_pred EEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q 028313 67 IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101 (210)
Q Consensus 67 v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 101 (210)
+.|+.+. ...+|||||+|.+.++|++|++.+++
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 4454443 35799999999999999999988775
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.40 E-value=0.0009 Score=48.56 Aligned_cols=41 Identities=20% Similarity=0.063 Sum_probs=36.6
Q ss_pred CCCcceEEEEEecCHHHHHHHHHhh-CCeeEcCeEEEEEEeec
Q 028313 75 TGEPRGFGFVQYIDPADAADAKYHM-DGYLLLGRELTVVFAEE 116 (210)
Q Consensus 75 ~g~~~g~afV~f~~~~~a~~A~~~l-~g~~i~g~~i~v~~a~~ 116 (210)
....+|+++|+|.+.++|++|++.| ||..|+| .|.|.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3456899999999999999999999 9999999 999988754
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.42 E-value=0.089 Score=45.90 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=44.9
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 101 (210)
+..++|+ +|..+...+|.++|..||.| .|.++. ...|||.|.+.+.|..+++++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHHh
Confidence 4466665 99999999999999999964 455543 34699999999999999998853
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=94.37 E-value=0.053 Score=34.41 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=43.5
Q ss_pred eEEEe-cCCCCCCHHHHHHHhccCC-----ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEE
Q 028313 39 SLLVR-NLRHDCRPEDLRGPFGQFG-----RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVV 112 (210)
Q Consensus 39 ~l~V~-nL~~~~te~~l~~~f~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~ 112 (210)
+|||. +--..+...+|..++..-+ .|-.|.|. ..|.||+... +.|+.+++.|++..+.|+.|.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 56664 2234567777777776544 45567775 4478998864 56778899999999999999988
Q ss_pred Eee
Q 028313 113 FAE 115 (210)
Q Consensus 113 ~a~ 115 (210)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=94.00 E-value=0.28 Score=32.25 Aligned_cols=69 Identities=9% Similarity=0.037 Sum_probs=53.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCC-------eeEcCe
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG-------YLLLGR 107 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-------~~i~g~ 107 (210)
.+.+-|-|-|+|..+-..++.-.....|---.|..+ -|-|.|.|.+.++...||..|-+ .+|.|.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 457778899999999999888777777766677776 56799999999999989877532 235566
Q ss_pred EEEE
Q 028313 108 ELTV 111 (210)
Q Consensus 108 ~i~v 111 (210)
.+.|
T Consensus 82 icdv 85 (129)
T 4eyt_A 82 ICDV 85 (129)
T ss_dssp EEEE
T ss_pred eeee
Confidence 5544
No 224
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=81.63 E-value=4.6 Score=26.38 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=27.9
Q ss_pred ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCee
Q 028313 63 RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 103 (210)
Q Consensus 63 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 103 (210)
+|..|.++.. ..||.||++...+++..+|+.+.|..
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCce
Confidence 3666666543 48999999999999989998888753
No 225
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=81.48 E-value=4.9 Score=24.24 Aligned_cols=55 Identities=9% Similarity=-0.084 Sum_probs=41.9
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 98 (210)
..+|.|.++.-..-...|+..|.. ..|..+.+... .+.+.|+|.+.++...+|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 346888898877778899999988 77887777543 57788888866666777754
No 226
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=76.88 E-value=14 Score=27.13 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=32.8
Q ss_pred CeEEEecCCC-C--------CCHHHHHHHh--ccCCceEEEEEecCCCCCCcceEEEEEecC
Q 028313 38 TSLLVRNLRH-D--------CRPEDLRGPF--GQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88 (210)
Q Consensus 38 ~~l~V~nL~~-~--------~te~~l~~~f--~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 88 (210)
-+++|-|++. . ....+|.+.| ..|..+.-..+. ++ ..+.|+|.|+|..
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~-~~--~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLW-NY--LGHSGTAIVEFNK 71 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEE-CS--SBEEEEEEEECCS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecc-cC--CCCceeEEEEecC
Confidence 4667889887 2 3347889877 889876644333 32 2457899999985
No 227
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=76.08 E-value=8.7 Score=32.54 Aligned_cols=8 Identities=0% Similarity=-0.176 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 028313 89 PADAADAK 96 (210)
Q Consensus 89 ~~~a~~A~ 96 (210)
.++...++
T Consensus 116 e~~L~~~F 123 (437)
T 3pgw_S 116 ESKLRREF 123 (437)
T ss_pred HHHHHHHH
Confidence 34444333
No 228
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=72.44 E-value=12 Score=22.15 Aligned_cols=55 Identities=5% Similarity=-0.026 Sum_probs=40.1
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec----CHHHHHHHHHhh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 99 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~A~~~l 99 (210)
++.|.|+.-..-...|+..+.....|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 5 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 5778888766667889999998877877776544 567888885 456677777653
No 229
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=72.03 E-value=11 Score=24.36 Aligned_cols=57 Identities=9% Similarity=0.123 Sum_probs=38.1
Q ss_pred eEEEecCCCCCCHHHHHHHhcc-CC-ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 98 (210)
..|+..+...++..+|++.+++ |+ .|..|..+.-+ . ..--|||.+....+|......
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~--~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-R--GEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-T--SCEEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-C--CceEEEEEcCCCCcHHHHHHh
Confidence 4566677889999999998876 44 55666544332 1 234699999877776655433
No 230
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=71.37 E-value=0.73 Score=33.23 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=18.0
Q ss_pred HHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec
Q 028313 52 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 87 (210)
Q Consensus 52 ~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 87 (210)
+|+.++|...|.|+.+... +||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~--------kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR--------MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT--------TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC--------CCeeEEeeC
Confidence 4666778888887665433 899999875
No 231
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=71.01 E-value=0.85 Score=30.91 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCCCeEEEecCCCCCCHHH
Q 028313 35 DLPTSLLVRNLRHDCRPED 53 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~ 53 (210)
...++|||+|||+++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 4456899999999999763
No 232
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=66.84 E-value=7.7 Score=22.74 Aligned_cols=55 Identities=11% Similarity=0.107 Sum_probs=38.8
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec---CHHHHHHHHHh
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI---DPADAADAKYH 98 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~---~~~~a~~A~~~ 98 (210)
.++.|.|+.-..-...|+..+.....|..+.+... .+-+.|+|. +.++...+|+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 35778888776667889999998877887777644 456778874 34555666654
No 233
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=66.13 E-value=16 Score=27.60 Aligned_cols=36 Identities=6% Similarity=0.026 Sum_probs=27.7
Q ss_pred eEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeE
Q 028313 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (210)
Q Consensus 64 i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i 104 (210)
|..|.... ..+||.|||=.+..++..||+.|.+...
T Consensus 139 I~Si~~~d-----~lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 139 ILSIFQRD-----NYTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp CCEEECCT-----TSTTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred EEEEEecC-----CCcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 55555432 2489999999999999999988887643
No 234
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=64.87 E-value=16 Score=24.51 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=26.8
Q ss_pred ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCe
Q 028313 63 RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 102 (210)
Q Consensus 63 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 102 (210)
.|..+..+.+ .+||-|||=.+..++..||+.+.+.
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 4666665533 3999999999999999999766544
No 235
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=62.92 E-value=18 Score=20.31 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=35.3
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec---CHHHHHHHHHh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI---DPADAADAKYH 98 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~---~~~~a~~A~~~ 98 (210)
++.|.|+.-..-...|+..+.....|..+.+... .+.+.|+|. +.++...+++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHH
Confidence 3556666555556788888988877877776543 456778875 34555555544
No 236
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=59.46 E-value=18 Score=23.25 Aligned_cols=55 Identities=7% Similarity=0.151 Sum_probs=36.3
Q ss_pred eEEEecCCCCCCHHHHHHHhcc-CC-ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHH
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 96 (210)
..|+..++..++..+|++.+++ |+ +|..|..+.-+ ...--|||++...++|....
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~---~~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM---DGEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT---TSSEEEEEEECTTSCHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC---CCceEEEEEECCCCcHHHHH
Confidence 3566778889999999988876 44 55666544332 12456999998766654443
No 237
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=59.40 E-value=22 Score=20.24 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=36.3
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecC---HHHHHHHHHhh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID---PADAADAKYHM 99 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~---~~~a~~A~~~l 99 (210)
++.|.|+.-......|+..+.....|..+.+... .+.+.|.|.. .++...+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 5677787655556778888988877887777643 4567788863 34445555443
No 238
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=58.71 E-value=18 Score=25.75 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=35.3
Q ss_pred eEEEecCCCCCCHHHHHHHhcc-CC-ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHH
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 96 (210)
..|+.-+...++..+|++.++. |+ .|..|..+.-+ . ..--|||.+....+|....
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~--g~KKAyV~L~~~~daldvA 136 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRP-N--GTKKAYVRLTADYDALDIA 136 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECT-T--SCEEEEEEECTTCCHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-C--CceEEEEEeCCCCcHHHHH
Confidence 4556677888899888888776 34 45566544332 1 2345899998666655544
No 239
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=58.34 E-value=17 Score=26.10 Aligned_cols=55 Identities=9% Similarity=0.265 Sum_probs=35.2
Q ss_pred eEEEecCCCCCCHHHHHHHhccC-C-ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHH
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQF-G-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~-G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 96 (210)
..|+.-+...++..+|++.++.+ + .|..|..+.-+ .| .--|||.+....+|....
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p-~g--~KKAyV~La~~~dAldvA 144 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI-TG--NKKAYIRLAADSDSLTLA 144 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--CEEEEEEECSSSCHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CC--cEEEEEEcCCCCcHHHHH
Confidence 45566678888998888888763 4 45566544332 12 346899998666655544
No 240
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=57.89 E-value=24 Score=20.10 Aligned_cols=54 Identities=9% Similarity=0.175 Sum_probs=37.4
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecC---HHHHHHHHHh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID---PADAADAKYH 98 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~---~~~a~~A~~~ 98 (210)
++.|.|+.-......|+..+.....|..+.+... .+.+.|.|.. .++...+|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP------KGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT------TTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 5778888766667888898988877877777644 4567777763 4555556644
No 241
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=56.76 E-value=15 Score=23.07 Aligned_cols=56 Identities=9% Similarity=0.207 Sum_probs=39.1
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec----CHHHHHHHHHhh
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 99 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~A~~~l 99 (210)
.+|.|.++.-......|+..+.....|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~------~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE------NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT------TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 45777777655556788999998878887777644 456788885 345566667655
No 242
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=56.48 E-value=26 Score=20.04 Aligned_cols=55 Identities=9% Similarity=0.044 Sum_probs=36.7
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec----CHHHHHHHHHh
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYH 98 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~A~~~ 98 (210)
.+|.|.++.-......|+..+.....|..+.+... .+.+.|.|. +.++...+|+.
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 35778887655556778888888877877776543 456778875 34555566654
No 243
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=56.19 E-value=5.4 Score=31.65 Aligned_cols=33 Identities=12% Similarity=-0.057 Sum_probs=25.5
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEEEEEe
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLP 70 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~ 70 (210)
..++|+|||++++...|.+++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999765555554444
No 244
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=55.77 E-value=32 Score=20.86 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=40.2
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec----CHHHHHHHHHhh
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 99 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~A~~~l 99 (210)
..+|.|.++.-......|+..+.....|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 346778888776667789999988888887776543 456788885 345556666553
No 245
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=55.22 E-value=15 Score=32.92 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHhc----cCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhh
Q 028313 45 LRHDCRPEDLRGPFG----QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99 (210)
Q Consensus 45 L~~~~te~~l~~~f~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 99 (210)
++.+.+--||..+|- .+|-|.++.|...+. .....+++|.|.+.++|..|+..|
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 455555568888883 578888887765442 233567889999999998888665
No 246
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=55.09 E-value=26 Score=19.69 Aligned_cols=54 Identities=9% Similarity=0.199 Sum_probs=37.8
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec----CHHHHHHHHHh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYH 98 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~A~~~ 98 (210)
++.|.|+.-......|+..+.....|..+.+... .+.+.|+|. +.++...+++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5778888766667888999988877877776543 456778885 34555555644
No 247
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=53.66 E-value=17 Score=26.08 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=34.6
Q ss_pred eEEEecCCCCCCHHHHHHHhccC-C-ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHH
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQF-G-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~-G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 97 (210)
..|+.-+...++..+|++.++.+ + .|..|..+.-+ ...--|||.+....+|.....
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~---~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP---DGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECT---TSSEEEEEEECTTSCHHHHHG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC---CCceEEEEEcCCCCcHHHHHH
Confidence 34556677788888888777653 3 45566444322 124468999987666655543
No 248
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=53.24 E-value=11 Score=29.69 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=24.7
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEE
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYL 69 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i 69 (210)
..-++|+|||++++...|.+++.. ..+..+.+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 356789999999999999999976 55544433
No 249
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=57.73 E-value=3 Score=28.23 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=39.6
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceE--EEEEecCHHHHHHHHHhhCCeeEcCeE
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF--GFVQYIDPADAADAKYHMDGYLLLGRE 108 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~--afV~f~~~~~a~~A~~~l~g~~i~g~~ 108 (210)
..||.|..+ ..+++|..|+.+++ +..+.+.....+|+. -| -|-.|.+.++|..|+..|....-...+
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l~~~~P 93 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADVQAKNP 93 (106)
Confidence 455655544 34667777777775 344544432223332 22 244789999999999888764433333
No 250
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=52.04 E-value=55 Score=22.51 Aligned_cols=53 Identities=8% Similarity=-0.017 Sum_probs=41.0
Q ss_pred cCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q 028313 44 NLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101 (210)
Q Consensus 44 nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 101 (210)
.++... .+++.+.+..+-+|..|..+ +|...-++.|.+.+.++....+..|.+
T Consensus 72 ~~~~~~-~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 72 TVKNAD-YERFKSYIQTLPNIEFCYRI----AGAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp EEGGGC-HHHHHHHHHTCTTEEEEEEE----ESSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred EECccc-HHHHHHHHhcChhhheeeee----eCCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 344332 56788888889999999876 455567888999999999999988876
No 251
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=51.88 E-value=47 Score=21.66 Aligned_cols=56 Identities=9% Similarity=0.091 Sum_probs=39.9
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecC----HHHHHHHHHhh
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 99 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~A~~~l 99 (210)
.+|.|.++.-......|+..+...-.|..+.+... .+.+.|+|.. .++...+|+.+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35678888777778889999998877887777644 4678888863 45556666553
No 252
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=51.79 E-value=31 Score=19.65 Aligned_cols=55 Identities=9% Similarity=0.128 Sum_probs=37.5
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec----CHHHHHHHHHhh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 99 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~A~~~l 99 (210)
++.|.++.-......|+..+.....|..+.+... .+.+.|.|. +.++...+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE------TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 4667777666667788899988877877776543 456778875 345556666543
No 253
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=51.76 E-value=33 Score=19.89 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=36.9
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecC----HHHHHHHHHhh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 99 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~A~~~l 99 (210)
++.|.++.-......|+..+.....|..+.+... .+.+.|.|.. .++...+|+.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4667777655556778888888877877776543 4567888853 45556666553
No 254
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=50.85 E-value=34 Score=19.71 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=34.7
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecC
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 88 (210)
..++.|.++.-......|+..+.....|..+.+... .+.+.|.|..
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~ 50 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA------TNKAHIKYDP 50 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT------TTEEEEEECT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec------CCEEEEEECC
Confidence 346788898777777889999998877887777543 4567888863
No 255
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=50.56 E-value=25 Score=20.13 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=35.8
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec----CHHHHHHHHHhh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 99 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~A~~~l 99 (210)
++.|.++.-......|+..+.....|..+.+... .+.+.|.|. +.++...+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 5677777554456778888888777766666543 456788886 345556666554
No 256
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=49.90 E-value=49 Score=22.44 Aligned_cols=30 Identities=0% Similarity=0.090 Sum_probs=14.7
Q ss_pred EEEecCCCCCCHHHHHHHhccCCceEEEEE
Q 028313 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYL 69 (210)
Q Consensus 40 l~V~nL~~~~te~~l~~~f~~~G~i~~v~i 69 (210)
|.|.++.-..-...|+..+.....|..+.+
T Consensus 78 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v 107 (151)
T 1p6t_A 78 FDIEGMTCAACANRIEKRLNKIEGVANAPV 107 (151)
T ss_dssp EEESSCCSSSHHHHHHHHHTTSSSEEECCE
T ss_pred EEecCCCCHHHHHHHHHHHhcCCCceEEEE
Confidence 444455444444555555555544444433
No 257
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=49.73 E-value=38 Score=19.93 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=39.4
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecC----HHHHHHHHHhh
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 99 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~A~~~l 99 (210)
..++.|.++.-......|+..+.....|..+.+... .+.+.|.|.. .++...+|+.+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 345778888777778889999988777766665533 4567888853 45556666554
No 258
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=49.55 E-value=11 Score=30.99 Aligned_cols=22 Identities=14% Similarity=-0.043 Sum_probs=18.8
Q ss_pred eEEEecCCCCCCHHHHHHHhcc
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQ 60 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~ 60 (210)
.++|+|||++++..-|..+|..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988888763
No 259
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=49.54 E-value=29 Score=20.39 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=36.8
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec----CHHHHHHHHHhh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 99 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~A~~~l 99 (210)
+|.|.++.-......|+..+.....|..+.+... .+.+.|.|. +.++...+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 6 YIQVTGMTCASCVANIERNLRREEGIYSILVALM------AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT------TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5677787666667889999988877776655433 455777875 345556666554
No 260
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=49.37 E-value=15 Score=28.53 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=22.6
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEEE
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDI 67 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~v 67 (210)
..++|+|||+.++...|.+++.....+..+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 358899999999999998888754334433
No 261
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=48.25 E-value=54 Score=21.69 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=41.4
Q ss_pred CeEEEecCCCCCCHHH--HHHHh----cc-C---C-----ceEEEEEecCCCCC--CcceEEEEEecCHHHH---HHHHH
Q 028313 38 TSLLVRNLRHDCRPED--LRGPF----GQ-F---G-----RLKDIYLPRDYYTG--EPRGFGFVQYIDPADA---ADAKY 97 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~--l~~~f----~~-~---G-----~i~~v~i~~~~~~g--~~~g~afV~f~~~~~a---~~A~~ 97 (210)
+.|.|-|||....+.. ++.+| .. | + .|..+.-...+.+. ...-...|.|....+- ..|..
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaar 83 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 83 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHHH
Confidence 5789999998633221 33333 22 2 2 34455433332221 1344677777766554 44444
Q ss_pred hhCCeeEcCeEEEEE
Q 028313 98 HMDGYLLLGRELTVV 112 (210)
Q Consensus 98 ~l~g~~i~g~~i~v~ 112 (210)
.....++.|.+|.+.
T Consensus 84 ~k~~vtykg~pirls 98 (100)
T 2w7a_A 84 EKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHCCEEETTEEEEEE
T ss_pred HhCceeeCCcceeec
Confidence 555688999998874
No 262
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=47.19 E-value=38 Score=19.26 Aligned_cols=55 Identities=7% Similarity=0.006 Sum_probs=35.2
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec---CHHHHHHHHHhh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI---DPADAADAKYHM 99 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~---~~~~a~~A~~~l 99 (210)
++.|.++.-......|+..+.....|..+.+... .+.+.|+|. +.+....+++.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLV------TNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTT------TTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHHC
Confidence 4667777655556778888888777777665433 456777775 345555666543
No 263
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=46.39 E-value=41 Score=19.41 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=38.7
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecC--HHHHHHHHHhh
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID--PADAADAKYHM 99 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~--~~~a~~A~~~l 99 (210)
.++.|.|+.-......|+..+.....|..+.+... .+.+.|.|.. .++...+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~------~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFA------TEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETT------TTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCHHHHHHHHHHc
Confidence 35778888776667889999988877887776543 4567788864 34445555443
No 264
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.29 E-value=8.4 Score=23.55 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=13.0
Q ss_pred CceEEEEEecCCCCCCcceEEEEEecC
Q 028313 62 GRLKDIYLPRDYYTGEPRGFGFVQYID 88 (210)
Q Consensus 62 G~i~~v~i~~~~~~g~~~g~afV~f~~ 88 (210)
|.|..|... +..|||.|++
T Consensus 28 GtV~kV~~~--------~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKVDSA--------REVCLVQFED 46 (68)
T ss_dssp EEEEEEETT--------TTEEEEEETT
T ss_pred eEEEEEecC--------CcEEEEEEcc
Confidence 556655432 6789999975
No 265
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=45.61 E-value=49 Score=21.94 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHhcc-CC---ceEEE-EEecCCCCCCcceEEEEEecCHHHHHHHH
Q 028313 47 HDCRPEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (210)
Q Consensus 47 ~~~te~~l~~~f~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 96 (210)
..++..+|++.+.+ |+ .+..| .|......|.+.|||+| |.+.+.|+..-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 44567777777654 33 23333 34444445667788865 77777776553
No 266
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=45.36 E-value=58 Score=21.83 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=27.6
Q ss_pred CCCHHHHHHHhcc-CC---ceEEE-EEecCCCCCCcceEEEEEecCHHHHHHH
Q 028313 48 DCRPEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAADA 95 (210)
Q Consensus 48 ~~te~~l~~~f~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~A 95 (210)
.++..+|++.+.+ |+ .+..| .|......|.+.|||.| |.+.+.|+..
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 4567777776653 33 23333 44444445677788865 7777777643
No 267
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=44.52 E-value=44 Score=21.58 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=16.5
Q ss_pred cceEEEEEecCHHHHHHHHH
Q 028313 78 PRGFGFVQYIDPADAADAKY 97 (210)
Q Consensus 78 ~~g~afV~f~~~~~a~~A~~ 97 (210)
......|+|.+.+.|..+.+
T Consensus 52 ~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHC
Confidence 46678999999999988763
No 268
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=44.36 E-value=31 Score=22.51 Aligned_cols=61 Identities=7% Similarity=-0.067 Sum_probs=34.2
Q ss_pred EEEecCCCCCCHHHHHHHhccCCceEEEEE-ecCCCCCCcceEEEEEec--CHHHHHHHHHhhC
Q 028313 40 LLVRNLRHDCRPEDLRGPFGQFGRLKDIYL-PRDYYTGEPRGFGFVQYI--DPADAADAKYHMD 100 (210)
Q Consensus 40 l~V~nL~~~~te~~l~~~f~~~G~i~~v~i-~~~~~~g~~~g~afV~f~--~~~~a~~A~~~l~ 100 (210)
|.|.-....+.+..|-++..+||--..|.. ..+...+...|.-+|++. +.+++++|+..|.
T Consensus 23 vrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~ 86 (98)
T 3ced_A 23 VRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELI 86 (98)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHH
Confidence 334333344556667777777763222211 111223455688888887 3667778887764
No 269
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=43.86 E-value=32 Score=22.61 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=38.8
Q ss_pred EecCCCCCCHHHHHHHhc-cCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q 028313 42 VRNLRHDCRPEDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101 (210)
Q Consensus 42 V~nL~~~~te~~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 101 (210)
|--++.-+.-++|+.-.. .||.-..+.++.+ .-.|-..+.++..+||+.|+-
T Consensus 33 Ii~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDr 85 (100)
T 2npt_B 33 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDR 85 (100)
T ss_dssp EEEECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHH
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhcc
Confidence 335677788888877664 6888888877633 257888999999999987763
No 270
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=43.71 E-value=14 Score=24.60 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=44.1
Q ss_pred EecCCCCCCHHHHHHHh-ccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEeec
Q 028313 42 VRNLRHDCRPEDLRGPF-GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (210)
Q Consensus 42 V~nL~~~~te~~l~~~f-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~~ 116 (210)
|-.++..+..++|+.-. ..||.-..+.+..+ -..|-..+.+|..+||+.|+-. ..-+.|+|-+..+
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~ 87 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVIN 87 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEEC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecC
Confidence 33567778877777665 46888777776622 3678889999999999887754 2233445544443
No 271
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=43.60 E-value=34 Score=24.18 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=27.3
Q ss_pred eEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCee
Q 028313 64 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 103 (210)
Q Consensus 64 i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 103 (210)
|..+.++.. ..||.||++...++...++..+.|..
T Consensus 33 i~~v~vp~~-----fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 33 IYAILAPSR-----VKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred EEEEEeecC-----CCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 556666532 48999999999888888998888753
No 272
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=43.52 E-value=79 Score=24.33 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=41.6
Q ss_pred CCeEEEecCCCCCC--HHHHHHHhcc-----CCc--------eEEEEEecCCCC--CCcceEEEEEecCHHHHHH---HH
Q 028313 37 PTSLLVRNLRHDCR--PEDLRGPFGQ-----FGR--------LKDIYLPRDYYT--GEPRGFGFVQYIDPADAAD---AK 96 (210)
Q Consensus 37 ~~~l~V~nL~~~~t--e~~l~~~f~~-----~G~--------i~~v~i~~~~~~--g~~~g~afV~f~~~~~a~~---A~ 96 (210)
-+.|.|-|||.... +..+..+|.. |.. |..+.=...+.+ ....-...|.|....+-+. |.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 46899999998776 3333333321 321 333322111111 1123356777776655444 44
Q ss_pred HhhCCeeEcCeEEEEEEe
Q 028313 97 YHMDGYLLLGRELTVVFA 114 (210)
Q Consensus 97 ~~l~g~~i~g~~i~v~~a 114 (210)
......++.|.+|.+...
T Consensus 132 R~k~~vtykG~pIrlsaD 149 (233)
T 2yko_A 132 REKGRVTLKGKPIRLTVD 149 (233)
T ss_dssp HTTSCEEETTEEEEEEEC
T ss_pred HHhcccccCCCceEEeCC
Confidence 445678899999887554
No 273
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=43.32 E-value=15 Score=28.46 Aligned_cols=29 Identities=10% Similarity=-0.086 Sum_probs=22.5
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEE
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKD 66 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~ 66 (210)
..++|+|||+.++...|..++.....+..
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~ 124 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPL 124 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCce
Confidence 35789999999999999999876443433
No 274
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=43.02 E-value=32 Score=28.67 Aligned_cols=50 Identities=12% Similarity=-0.032 Sum_probs=35.3
Q ss_pred EEEecCCCCC----CHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028313 40 LLVRNLRHDC----RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (210)
Q Consensus 40 l~V~nL~~~~----te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 98 (210)
-+||||..-. ....+.++..+||.|..+.+- +.-+|...+.+.|+.++..
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~ 70 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIK 70 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTT
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHh
Confidence 4688886432 235677788899999888764 2346667789999888843
No 275
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.01 E-value=53 Score=20.97 Aligned_cols=54 Identities=7% Similarity=0.104 Sum_probs=34.5
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec-CHHHHHHHHHhh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI-DPADAADAKYHM 99 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~a~~A~~~l 99 (210)
+|.|. +.-..-...|+..|.....|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 22 ~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~------~~~~~V~~~~~~~~i~~~i~~~ 76 (98)
T 2crl_A 22 EFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLE------DQMVLVHTTLPSQEVQALLEGT 76 (98)
T ss_dssp EEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETT------TTEEEEEESSCHHHHHHHHHTT
T ss_pred EEEEe-eECHHHHHHHHHHHHcCCCceEEEEECC------CCEEEEEEeCCHHHHHHHHHHh
Confidence 34454 4433345788888988877887777644 455667774 556666676553
No 276
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=42.91 E-value=48 Score=19.19 Aligned_cols=52 Identities=6% Similarity=-0.004 Sum_probs=34.5
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec-CHHHHHHHHHh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI-DPADAADAKYH 98 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~a~~A~~~ 98 (210)
++.| ++.-..-...|+..+.....| .+.+... .+-+.|++. +.++...+|+.
T Consensus 5 ~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~------~~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 5 EFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLP------NKKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp EEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETT------TTEEEEEESSCHHHHHHHHHT
T ss_pred EEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcC------CCEEEEEecCCHHHHHHHHHH
Confidence 4667 776555577888888877667 7776544 345666664 56666777754
No 277
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=42.91 E-value=7.6 Score=30.30 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=24.5
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEe
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLP 70 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~ 70 (210)
-.+|+|||+.++...|..++.....+..+.++
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 34899999999999999999866555544443
No 278
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=42.36 E-value=44 Score=22.55 Aligned_cols=55 Identities=7% Similarity=0.118 Sum_probs=28.6
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec----CHHHHHHHHHhh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 99 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~A~~~l 99 (210)
+|.|.|+.-..-...|+..+.....|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 83 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 83 ELTITGMTCASCVHNIESKLTRTNGITYASVALA------TSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT------TTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred EEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC------CCEEEEEECCCCCCHHHHHHHHHhC
Confidence 4556566544445556666666555555554432 345566664 234445555443
No 279
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=42.22 E-value=43 Score=18.47 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=35.1
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecC----HHHHHHHHHh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYH 98 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~A~~~ 98 (210)
++.|.++.-......|...+...-.|..+.+... .+.+.|.|.. .++...+++.
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLE------AGKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4677777655455678888888777777766533 4567788763 4455555644
No 280
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=41.71 E-value=59 Score=21.59 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHhcc-CC---ceEEE-EEecCCCCCCcceEEEEEecCHHHHHH
Q 028313 47 HDCRPEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAAD 94 (210)
Q Consensus 47 ~~~te~~l~~~f~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~ 94 (210)
..++..+|++.+.+ |+ .+..| .|....-.|.+.|||.| |.+.+.|+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 44567777776653 33 23333 44444445677788865 777777754
No 281
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=41.64 E-value=49 Score=18.90 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=38.1
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec----CHHHHHHHHHhh
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 99 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~A~~~l 99 (210)
.++.|.++.-......|+..+.....|..+.+... .+.+.|.|. +.++...+++.+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLA------TETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 35778888776667788999988777777766533 456778875 345555566543
No 282
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=41.00 E-value=60 Score=20.93 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=34.0
Q ss_pred EEEecCCCCCCHHHHHHHhcc-CC----ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028313 40 LLVRNLRHDCRPEDLRGPFGQ-FG----RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (210)
Q Consensus 40 l~V~nL~~~~te~~l~~~f~~-~G----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 98 (210)
|++..++..++-++|.+.+.. |+ ..-.++++-+ .| -+|++.+.++.+.|+..
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE--eG-----D~itisSd~EL~eAl~l 73 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE--EG-----DPCTVSSQLELEEAFRL 73 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS--SS-----CCEECCSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC--CC-----CcccccCHHHHHHHHHH
Confidence 667778889998887766543 22 2233444422 23 36889999999999874
No 283
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=46.52 E-value=5.9 Score=26.16 Aligned_cols=67 Identities=7% Similarity=0.022 Sum_probs=37.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCceEEEE-------------EecCC----CCCCcceEEEEEecCHHHHHHHHH
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIY-------------LPRDY----YTGEPRGFGFVQYIDPADAADAKY 97 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~-------------i~~~~----~~g~~~g~afV~f~~~~~a~~A~~ 97 (210)
.+.+-|-|-|+|..+-..++.-.....|---.|. |..+. ..-...|-|.|.|.+.++...|+.
T Consensus 16 kqnclikiinipqgtlkaevvlavrhlgyefycdyidensnqinsnliqqdqhpqlndllkegqamirfqnsdeqrlaiq 95 (137)
T 2lsl_A 16 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDENSNQINSNLIQQDQHPQLNDLLKEGQAMIRFQNSDEQRLAIQ 95 (137)
Confidence 4456667778888776655543332222111111 11110 011235789999999998888887
Q ss_pred hhCC
Q 028313 98 HMDG 101 (210)
Q Consensus 98 ~l~g 101 (210)
.|-+
T Consensus 96 klln 99 (137)
T 2lsl_A 96 KLLN 99 (137)
Confidence 6543
No 284
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=39.44 E-value=12 Score=23.49 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=13.0
Q ss_pred CceEEEEEecCCCCCCcceEEEEEecC
Q 028313 62 GRLKDIYLPRDYYTGEPRGFGFVQYID 88 (210)
Q Consensus 62 G~i~~v~i~~~~~~g~~~g~afV~f~~ 88 (210)
|.|.+|... ...|||.|++
T Consensus 45 GTI~kV~~~--------~e~ClV~F~D 63 (79)
T 2m0o_A 45 GTIKKVDSA--------REVCLVQFED 63 (79)
T ss_dssp EEEEEEETT--------TTEEEEEETT
T ss_pred EEEEEeccC--------CCEEEEEEcC
Confidence 566655433 6689999976
No 285
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=39.12 E-value=36 Score=22.03 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=43.2
Q ss_pred ecCCCCCCHHHHHHHhc-cCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEeec
Q 028313 43 RNLRHDCRPEDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 116 (210)
Q Consensus 43 ~nL~~~~te~~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~~ 116 (210)
--++.-+.-++|+.-.. .||.-..+.++.+ --.|-..+.++..+|++.|+-. ..-+.|+|-+..+
T Consensus 18 i~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs-~~mkSLRIlL~~~ 83 (94)
T 2jrh_A 18 IAFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRS-SSMKSLRILLLSQ 83 (94)
T ss_dssp EEECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHS-TTTTEEEEEEEEC
T ss_pred EecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccC-ccccceEEEEEcC
Confidence 35566778777776664 6888888877633 2567888999999999876632 2233445544443
No 286
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=38.83 E-value=1.1e+02 Score=21.95 Aligned_cols=51 Identities=6% Similarity=0.159 Sum_probs=39.1
Q ss_pred cCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhh
Q 028313 44 NLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99 (210)
Q Consensus 44 nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 99 (210)
.++. ...+++.+.+..+-+|..|..+ +|...-++.|.+.+.++....++.|
T Consensus 94 ~~~~-~~~~~v~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~l~~l 144 (171)
T 2e1c_A 94 KVKA-GKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLI 144 (171)
T ss_dssp EECT-TCHHHHHHHHHTSTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHH
T ss_pred EECc-chHHHHHHHHhcCcCeEEEEEe----eCCCCEEEEEEECCHHHHHHHHHHH
Confidence 4553 3457788888999999999886 5666678889999999988777544
No 287
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=38.26 E-value=96 Score=21.36 Aligned_cols=52 Identities=6% Similarity=0.156 Sum_probs=40.0
Q ss_pred cCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028313 44 NLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (210)
Q Consensus 44 nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 100 (210)
.++. ...+++.+.+..+-+|..|..+ +|...-++.|.+.+.++....++.|.
T Consensus 74 ~~~~-~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~~~~l~ 125 (151)
T 2cyy_A 74 KVKA-GKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLIG 125 (151)
T ss_dssp EECT-TCHHHHHHHHHTCTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred EECc-ccHHHHHHHHhcCCCeeEeeEe----cCCCCEEEEEEECCHHHHHHHHHHHh
Confidence 4553 3567888889999999999886 56666778899999999888775554
No 288
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=37.85 E-value=70 Score=21.65 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=36.7
Q ss_pred CHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHH-HhhCC
Q 028313 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK-YHMDG 101 (210)
Q Consensus 50 te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~l~g 101 (210)
..+++.+.+..+.+|..|..+ +|...-++.|.+.+.++....+ +.|..
T Consensus 76 ~~~~~~~~l~~~~~v~~~~~~----~G~~d~~~~v~~~d~~~l~~~~~~~l~~ 124 (141)
T 1i1g_A 76 KLFEVAEKLKEYDFVKELYLS----SGDHMIMAVIWAKDGEDLAEIISNKIGK 124 (141)
T ss_dssp GHHHHHHHHHHSTTEEEECCC----SSSSSEEEEEEESSHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHhcCCCeEEEEEe----cCCCCEEEEEEECCHHHHHHHHHHHhhc
Confidence 456777778888999888765 5665677889999999998888 55543
No 289
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=37.51 E-value=52 Score=22.51 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=41.3
Q ss_pred eEEEecCCCCCCHHHH---HHHhccCCceEEEEEecCCCCCCcceEEEEEec--CHHHHHHHHHhh-------CC---ee
Q 028313 39 SLLVRNLRHDCRPEDL---RGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI--DPADAADAKYHM-------DG---YL 103 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l---~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~--~~~~a~~A~~~l-------~g---~~ 103 (210)
.|.|.++|..+..+-. +.+-..|.--....|+ |...|..-|.|. +.+..++|++.| .| ..
T Consensus 44 ~i~itgvpeqvrkelakeaerl~~efni~v~y~im-----gsgsgvm~i~f~gddlea~ekalkemirqarkfagtvtyt 118 (170)
T 4hhu_A 44 VIVITGVPEQVRKELAKEAERLKAEFNINVQYQIM-----GSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYT 118 (170)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEE-----CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEE-----eCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEE
Confidence 4668899877654321 2222334322333444 233667777775 788888887654 34 24
Q ss_pred EcCeEEEEEEe
Q 028313 104 LLGRELTVVFA 114 (210)
Q Consensus 104 i~g~~i~v~~a 114 (210)
+.|..|.|.+.
T Consensus 119 l~gn~l~i~it 129 (170)
T 4hhu_A 119 LSGNRLVIVIT 129 (170)
T ss_dssp ECSSEEEEEEE
T ss_pred EeCCEEEEEEe
Confidence 78888777654
No 290
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=37.45 E-value=1e+02 Score=21.29 Aligned_cols=53 Identities=11% Similarity=0.044 Sum_probs=40.4
Q ss_pred cCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHH-HhhC
Q 028313 44 NLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK-YHMD 100 (210)
Q Consensus 44 nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~l~ 100 (210)
.++.....+++.+.+..+-+|..|..+ +|...-++.|.+.+.++....+ +.|.
T Consensus 75 ~~~~~~~~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~~d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 75 ILKSAKDYPSALAKLESLDEVTEAYYT----TGHYSIFIKVMCRSIDALQHVLINKIQ 128 (152)
T ss_dssp EESSGGGHHHHHHHHHTCTTEEEEEEE----SSSCSEEEEEEESCHHHHHHHHHHTTT
T ss_pred EECCCCCHHHHHHHHhCCcCeEEEEEE----ecccCEEEEEEECCHHHHHHHHHHHhh
Confidence 444433457788889999999999887 6666778889999999998877 3444
No 291
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=36.60 E-value=28 Score=30.62 Aligned_cols=55 Identities=7% Similarity=-0.033 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHhc----cCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028313 45 LRHDCRPEDLRGPFG----QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (210)
Q Consensus 45 L~~~~te~~l~~~f~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 100 (210)
++.+.+.-+|..+|. .+|-|..+.|...+.. .....+++.|.+.++|..|+..+.
T Consensus 281 ~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 281 GARSGAGINYKHIILGSEGTLGIITEAVMKVHAVP-QAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp ------CCCTHHHHTTCTTSSCEEEEEEEECEECC-SEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcchhhhhccCCCCcEEEEEEEEEEEecc-cceEEEEEEcCCHHHHHHHHHHHH
Confidence 333334446666663 4567888877655422 234577899999999988876553
No 292
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=36.31 E-value=36 Score=22.65 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=36.7
Q ss_pred cCCCCCCHHHHHHHhc-cCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q 028313 44 NLRHDCRPEDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101 (210)
Q Consensus 44 nL~~~~te~~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 101 (210)
.++.-+.-++|+.-.. .||.-..+.++.+ .-.|-..+.++..+||+.|+-
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDr 96 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDR 96 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhcc
Confidence 5667778777776654 6888777777633 246778899999999988764
No 293
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=36.09 E-value=25 Score=20.07 Aligned_cols=53 Identities=8% Similarity=0.035 Sum_probs=32.0
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 98 (210)
++.|.|+.-..-...|+..+... .|..+.+... .+.+.|.|...++...+++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVE------EKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETT------TTEEEEECSCHHHHHHHHHT
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECC------CCEEEEEECCHHHHHHHHHH
Confidence 35555655444456778888777 6766666533 45677888754344445543
No 294
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=35.87 E-value=58 Score=18.11 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=36.3
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecC----HHHHHHHHHh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYH 98 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~A~~~ 98 (210)
++.|.++.-......|+..+.....|..+.+... .+.+.|.|.. .++...+++.
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 63 (71)
T 2ldi_A 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAA 63 (71)
T ss_dssp EEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETT------TTEEEEEECTTTCCTHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5778888766666778888888777777766543 4567777763 3445555644
No 295
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=35.84 E-value=1e+02 Score=21.67 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=41.1
Q ss_pred eEEEe-cCCCCC--CHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhh
Q 028313 39 SLLVR-NLRHDC--RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99 (210)
Q Consensus 39 ~l~V~-nL~~~~--te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 99 (210)
+.||. .++... ..+++.+.+..+-+|..|..+ +|...-.++|.+.+.++....+..+
T Consensus 64 ~a~v~v~v~~~~~~~~~~~~~~l~~~peV~~~~~v----tG~~D~~l~v~~~d~~~l~~~l~~~ 123 (162)
T 3i4p_A 64 TVFVSIRTASHSIEWLKRFSEVVSEFPEVVEFYRM----SGDVDYLLRVVVPDIAAYDAFYKRM 123 (162)
T ss_dssp EEEEEEECCSCCHHHHHHHHHHHHHCTTEEEEEEC----CSSCSEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEEEEcCCChHHHHHHHHHHhcCCCEEEeeec----CCCCCEEEEEEECCHHHHHHHHHHH
Confidence 44443 555543 246777778888899999886 6666778899999999988877543
No 296
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=35.73 E-value=7.7 Score=26.88 Aligned_cols=28 Identities=11% Similarity=-0.017 Sum_probs=0.0
Q ss_pred ceEEEEEecCHHHHHHHHHhhCCeeEcC
Q 028313 79 RGFGFVQYIDPADAADAKYHMDGYLLLG 106 (210)
Q Consensus 79 ~g~afV~f~~~~~a~~A~~~l~g~~i~g 106 (210)
..++|++|++...+..|+..|+|....|
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g 31 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMG 31 (135)
T ss_dssp ----------------------------
T ss_pred cccccccccCCCchhhhhhhccCCCCCC
Confidence 3478888899999999999998866544
No 297
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=35.56 E-value=15 Score=24.19 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=15.2
Q ss_pred EecCCCCCCHHHHHHHhc-cCCc
Q 028313 42 VRNLRHDCRPEDLRGPFG-QFGR 63 (210)
Q Consensus 42 V~nL~~~~te~~l~~~f~-~~G~ 63 (210)
|.+|...||-+||...|. ..|+
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 446888999888888654 3453
No 298
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=35.44 E-value=87 Score=21.48 Aligned_cols=35 Identities=11% Similarity=0.193 Sum_probs=19.2
Q ss_pred CceEEEEEecCCCCCCcceEEEEE-ecCHHHHHHHHHhhC
Q 028313 62 GRLKDIYLPRDYYTGEPRGFGFVQ-YIDPADAADAKYHMD 100 (210)
Q Consensus 62 G~i~~v~i~~~~~~g~~~g~afV~-f~~~~~a~~A~~~l~ 100 (210)
-.|..|.+..|- ....+||. |-+.++.+.+++.|+
T Consensus 44 vtVt~V~vS~Dl----~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 44 VELSKVSLTPDF----SACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp CCEEEEEECTTS----CCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eEEEEEEECCCC----cEEEEEEEecCChhhHHHHHHHHH
Confidence 467888887662 23445665 445544444444443
No 299
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=35.26 E-value=70 Score=20.70 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=36.3
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEE-ecCCCCCCcceEEEEEec-CHHHHHHHHHhhC
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYL-PRDYYTGEPRGFGFVQYI-DPADAADAKYHMD 100 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i-~~~~~~g~~~g~afV~f~-~~~~a~~A~~~l~ 100 (210)
.|.|.-....+.+..|-++...||--..|.. ..+...+...|.-+|++. +.++.++|+..|.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLR 88 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHH
Confidence 4555544555677778888888874333211 112223455678888886 3556677776664
No 300
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=35.19 E-value=19 Score=22.42 Aligned_cols=55 Identities=13% Similarity=0.022 Sum_probs=33.1
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec-CHHHHHHHHHh
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI-DPADAADAKYH 98 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~a~~A~~~ 98 (210)
.+|.|.++.-......|+..+.....|..+.+... .+.+.|+|. +.++...+|+.
T Consensus 24 ~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~------~~~~~V~~~~~~~~i~~~i~~ 79 (85)
T 2k2p_A 24 LSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPA------SRTVVVGGVSDAAHIAEIITA 79 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETT------TTEEEEESCCCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECC------CCEEEEEecCCHHHHHHHHHH
Confidence 34555565544445678888877766766666543 445666664 45555666654
No 301
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.68 E-value=40 Score=23.03 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=22.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCce
Q 028313 35 DLPTSLLVRNLRHDCRPEDLRGPFGQFGRL 64 (210)
Q Consensus 35 ~~~~~l~V~nL~~~~te~~l~~~f~~~G~i 64 (210)
-.+.+|+|.++. ..+.++|+.++..+|..
T Consensus 23 f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~ 51 (129)
T 2d8m_A 23 LQGVVVVLSGFQ-NPFRSELRDKALELGAK 51 (129)
T ss_dssp STTEEEEEESCC-TTHHHHHHHHHHHTTEE
T ss_pred CCCeEEEEeCCC-cHHHHHHHHHHHHcCCE
Confidence 346788888886 55778999999999864
No 302
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=34.58 E-value=30 Score=29.86 Aligned_cols=43 Identities=19% Similarity=0.027 Sum_probs=27.3
Q ss_pred HHHHHh--ccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHH
Q 028313 53 DLRGPF--GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (210)
Q Consensus 53 ~l~~~f--~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 96 (210)
+|..+| ..+|-|..+.|...+. ......+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHH
Confidence 345666 3688888887765542 223456788898877765533
No 303
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=34.36 E-value=91 Score=22.21 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=27.7
Q ss_pred CCCHHHHHHHhcc-CC---ceEEE-EEecCCCCCCcceEEEEEecCHHHHHHH
Q 028313 48 DCRPEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAADA 95 (210)
Q Consensus 48 ~~te~~l~~~f~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~A 95 (210)
.++..+|.+.+.. |+ ++..| .|....-.|.+.|||.| |++.+.|...
T Consensus 32 TpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 32 TASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp SCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 4667778777754 43 22333 33444445667788776 6777777643
No 304
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=34.13 E-value=70 Score=18.53 Aligned_cols=55 Identities=7% Similarity=0.056 Sum_probs=34.4
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecC----HHHHHHHHHhh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 99 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~A~~~l 99 (210)
++.|.++.-......|+..+.....|..+.+... .+.+.|.|.. .++...+++.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (80)
T 1jww_A 6 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 64 (80)
T ss_dssp EEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSS------SSEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4667777655456678888887766766554322 4567788753 44555556543
No 305
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Probab=33.95 E-value=1.5e+02 Score=22.14 Aligned_cols=57 Identities=7% Similarity=-0.037 Sum_probs=35.2
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccC------CceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhC
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQF------GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 100 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~------G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 100 (210)
+.-+||. |....+++++..++..| +.|..-.++.+ -+-+++.|.+-..|..|.+.|-
T Consensus 75 ~lMmFV~-v~g~~Se~Ete~it~lWQtsL~NnhI~~qry~Id------~dr~iFm~~DGs~a~E~KdFLl 137 (195)
T 2kgl_A 75 TLMMFVT-VSGNPTEKETEEITSLWQGSLFNANYDVQRFIVG------SDRAIFMLRDGSYAWEIKDFLV 137 (195)
T ss_dssp CCEEEEE-SSSCSCHHHHHHHHHHHHHHGGGSCCEEEEEEET------TEEEEEEESCSHHHHHHHHHHH
T ss_pred ceEEEEE-eCCCCCHHHHHHHHHHHHHHHHhCCeeEEEEEec------CCeEEEEeCchHHHHHHHHHHh
Confidence 4557775 55567777766665433 33433233333 4678889999888888876553
No 306
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=33.95 E-value=79 Score=19.09 Aligned_cols=44 Identities=7% Similarity=-0.052 Sum_probs=36.5
Q ss_pred CHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHH
Q 028313 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97 (210)
Q Consensus 50 te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 97 (210)
..+++.+.+..+.+|.+|..+ +|...-.+.|.+.+.++.+..+.
T Consensus 14 ~~~~~~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~~~ 57 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVHVV----YGVYDIVVKVEADSMDKLKDFVT 57 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEEEC----SSSCSEEEEEECSSHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeEEEEEE----eccCCEEEEEEECCHHHHHHHHH
Confidence 357888889999999999887 66667778899999999888774
No 307
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=33.90 E-value=60 Score=21.75 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=31.9
Q ss_pred eEEEecCCCCCCHHHHHHHhcc-------CCceEEEEEecCCCCCC--cceEE-EEEecCHHHHHH
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQ-------FGRLKDIYLPRDYYTGE--PRGFG-FVQYIDPADAAD 94 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~-------~G~i~~v~i~~~~~~g~--~~g~a-fV~f~~~~~a~~ 94 (210)
.|.+..|...++++++.++... ...|..+.+-.+.. +. .-.+| +++|++.++.+.
T Consensus 24 HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 24 HIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHH
Confidence 4566788889888776665433 33456665544432 22 22334 568887776543
No 308
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=33.77 E-value=1.3e+02 Score=21.62 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=39.9
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec----CHHHHHHHHHhh
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 99 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~A~~~l 99 (210)
.+|.|.++.-......|+..+...-.|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 124 ~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 124 TLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLA------EGTATVLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45778888766667889999998888888777644 467888885 345566666554
No 309
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=33.77 E-value=20 Score=21.91 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=8.5
Q ss_pred ceEEEEEecC
Q 028313 79 RGFGFVQYID 88 (210)
Q Consensus 79 ~g~afV~f~~ 88 (210)
.+.|+|.|.+
T Consensus 41 ~gtC~V~F~D 50 (66)
T 2eqj_A 41 KQSCFIIFED 50 (66)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 6889999975
No 310
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=33.70 E-value=38 Score=22.35 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=32.0
Q ss_pred CCCHHHHHHHhccCCceEEEEE-ecCCCCCCcceEEEEEec-CHHHHHHHHHhhCC
Q 028313 48 DCRPEDLRGPFGQFGRLKDIYL-PRDYYTGEPRGFGFVQYI-DPADAADAKYHMDG 101 (210)
Q Consensus 48 ~~te~~l~~~f~~~G~i~~v~i-~~~~~~g~~~g~afV~f~-~~~~a~~A~~~l~g 101 (210)
.+.+..|-++...||--.+|.. ..+...+...|.-+|++. +.++.++|+..|..
T Consensus 32 ~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 32 SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQE 87 (106)
T ss_dssp CTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred ccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 4556677777788874333211 112224556788888886 45667777766653
No 311
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=33.50 E-value=1.1e+02 Score=22.51 Aligned_cols=49 Identities=4% Similarity=-0.161 Sum_probs=33.4
Q ss_pred CCeEEEecCCCCCCHHH--------HHHHhccCCceEEEEEecCCCCCCcceEEEEEecC
Q 028313 37 PTSLLVRNLRHDCRPED--------LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 88 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~--------l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 88 (210)
...=|+-.||.+++.++ ++++|..+|-|..+.|..+. ...-+|.|.|.+
T Consensus 70 lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~---~~NpHaHim~t~ 126 (185)
T 2ns6_A 70 LFKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGG---GENPHCHLMISE 126 (185)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEET---TTEEEEEEEECC
T ss_pred EEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCC---CCCceEEEEEee
Confidence 44556779999998644 44456667888888887632 235588888864
No 312
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=32.92 E-value=51 Score=28.14 Aligned_cols=54 Identities=24% Similarity=0.145 Sum_probs=35.0
Q ss_pred CCCCCCHHHHHHHhc----cCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhh
Q 028313 45 LRHDCRPEDLRGPFG----QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99 (210)
Q Consensus 45 L~~~~te~~l~~~f~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 99 (210)
+..+.+.-+|..+|. .+|-|..+.+...+. ......+++.|.+.++|..|+..+
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~-p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPK-PRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEEC-CSEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeec-CceeEEEEEEcCCHHHHHHHHHHH
Confidence 334444446666663 456788877765442 233566889999999988877655
No 313
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=32.89 E-value=85 Score=19.17 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=36.8
Q ss_pred CHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHH
Q 028313 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97 (210)
Q Consensus 50 te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 97 (210)
..+++.+.+..+-+|..|..+ +|...-.+.|.+.+.++.+..+.
T Consensus 14 ~~~~~~~~l~~~peV~e~~~v----tG~~D~ll~v~~~d~~~l~~~i~ 57 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAYVV----YGEYDLIVKVETDTLKDLDQFIT 57 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEEEC----BSSCSEEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeeEEEEE----cccCCEEEEEEECCHHHHHHHHH
Confidence 357888889999999999887 66667788899999999988875
No 314
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.33 E-value=7.5 Score=23.39 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=8.2
Q ss_pred ceEEEEEecC
Q 028313 79 RGFGFVQYID 88 (210)
Q Consensus 79 ~g~afV~f~~ 88 (210)
+..|||.|++
T Consensus 35 ~~~ClV~FeD 44 (63)
T 2e5q_A 35 KQSCLVTFED 44 (63)
T ss_dssp TSEEEEEETT
T ss_pred CCEEEEEEcc
Confidence 6789999975
No 315
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=32.00 E-value=93 Score=21.91 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=29.6
Q ss_pred HHHHHhccCCceEEEEEec-----CC----------CCCCcceEEEEEecCHHHHHHHHHh
Q 028313 53 DLRGPFGQFGRLKDIYLPR-----DY----------YTGEPRGFGFVQYIDPADAADAKYH 98 (210)
Q Consensus 53 ~l~~~f~~~G~i~~v~i~~-----~~----------~~g~~~g~afV~f~~~~~a~~A~~~ 98 (210)
...++|..||.+..+...- .+ ..+..--|.+|+|.+.+...++..+
T Consensus 49 ~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 49 KAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 3456788999765443221 11 1234567899999999888877643
No 316
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=31.71 E-value=1.2e+02 Score=20.43 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=33.2
Q ss_pred CeEEEecCCCCCCHHHHHHHhc-------cCCceEEEEEecCCCCCCcceEE-EEEecCHHHHHH
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFG-------QFGRLKDIYLPRDYYTGEPRGFG-FVQYIDPADAAD 94 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~-------~~G~i~~v~i~~~~~~g~~~g~a-fV~f~~~~~a~~ 94 (210)
..|.+..|...++++++.+++. +...|..+.+-.+......-.+| +++|++.++.+.
T Consensus 22 ~HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 22 RHTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 4466668888887766555543 34456666665443221113445 568888777643
No 317
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=31.61 E-value=64 Score=24.09 Aligned_cols=56 Identities=7% Similarity=0.068 Sum_probs=36.4
Q ss_pred CHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCe------eEcCe-EEEEE
Q 028313 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY------LLLGR-ELTVV 112 (210)
Q Consensus 50 te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~------~i~g~-~i~v~ 112 (210)
.+++|++.+..|..+. +..+.-+.--||+|.+.++....|..|.|. .++|. .|...
T Consensus 66 ~~~~I~~Ei~aYnpLi-------P~~~~l~ATl~IE~~d~~er~~~L~~L~Gie~~v~l~v~~~~~V~ai 128 (194)
T 3fjv_A 66 DEDGIQAELDAYLPLV-------PDGSNLKATLQIEYENETQRRAALARLVGIEDRVFLRVDDEAPVYAI 128 (194)
T ss_dssp SHHHHHHHHHHHGGGC-------CCSSEEEEEEEECCSSHHHHHHHHHHTTTGGGSEEEEETTSCCEECE
T ss_pred CHHHHHHHHHHhcccC-------CCCCcEEEEEEEEcCCHHHHHHHHHHhcCccceEEEEECCcceeeee
Confidence 4455555555554431 123333556799999999999999999984 46665 45543
No 318
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=31.28 E-value=94 Score=19.15 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=38.5
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecC----HHHHHHHHHhh
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 99 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~A~~~l 99 (210)
.++.|.++.-......|...+.....|..+.+... .+.+.|.|.. .+....+|..+
T Consensus 18 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 18 SYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVP------SRTVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778888777777889999988777777766543 4567788853 45555566543
No 319
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=30.16 E-value=1.3e+02 Score=20.45 Aligned_cols=25 Identities=4% Similarity=-0.145 Sum_probs=18.2
Q ss_pred ceEEEEEecCHHHHHHHHHhhCCeeE
Q 028313 79 RGFGFVQYIDPADAADAKYHMDGYLL 104 (210)
Q Consensus 79 ~g~afV~f~~~~~a~~A~~~l~g~~i 104 (210)
+..+.|.+++.+.|.++|+. .|..+
T Consensus 111 ~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 111 VANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp EEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred cEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 56677788888888888866 55443
No 320
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=30.01 E-value=65 Score=20.80 Aligned_cols=62 Identities=6% Similarity=-0.036 Sum_probs=34.2
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEE-ecCCCCCCcceEEEEEec-CHHHHHHHHHhhC
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYL-PRDYYTGEPRGFGFVQYI-DPADAADAKYHMD 100 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i-~~~~~~g~~~g~afV~f~-~~~~a~~A~~~l~ 100 (210)
.|.|.-....+.+..|-++...||--..|.. ..+...+...|.-+|++. +.++.++|+..|.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (100)
T 2qsw_A 25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLR 88 (100)
T ss_dssp EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHH
Confidence 3444433445566677777777774332211 112223455678888886 3556677776664
No 321
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=29.88 E-value=32 Score=28.39 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=34.3
Q ss_pred EEecCCCC---CCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHh
Q 028313 41 LVRNLRHD---CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 98 (210)
Q Consensus 41 ~V~nL~~~---~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 98 (210)
+|||+..- -....+.++..+||.|..+.+. +.-+|.+.+.+.++.++..
T Consensus 20 liG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 20 IIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG---------SQRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp TTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHHT
T ss_pred cccChhhhccccHhHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHhc
Confidence 46766432 2245678888999999777653 2456778899999888853
No 322
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=29.42 E-value=51 Score=20.08 Aligned_cols=63 Identities=5% Similarity=-0.067 Sum_probs=38.5
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeE
Q 028313 37 PTSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (210)
Q Consensus 37 ~~~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i 104 (210)
...|.||-+....+.+.|..-+...|.-..| ... +...-.-+--|.+.++|+.++..|...-+
T Consensus 9 ~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i--~~~---~~~yRV~vGpf~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 9 LYKVQIGAFKVKANADSLASNAEAKGFDSIV--LLK---DGLYKVQIGAFSSKDNADTLAARAKNAGF 71 (79)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHHTCCEEE--EEE---TTEEEEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CEEEEEEEcCCHHHHHHHHHHHHhCCCCeEE--ecC---CcEEEEEECCcCCHHHHHHHHHHHHHcCC
Confidence 4578888887766666677666655532223 211 11122334478899999999988765333
No 323
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=29.16 E-value=1.4e+02 Score=20.44 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=35.4
Q ss_pred HHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEe-cCHHHHHHHH-HhhC
Q 028313 51 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-IDPADAADAK-YHMD 100 (210)
Q Consensus 51 e~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f-~~~~~a~~A~-~~l~ 100 (210)
.+++.+.+..+-+|..|..+ +|...-++.|.+ .+.++....+ +.|.
T Consensus 82 ~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~~~d~~~l~~~~~~~l~ 129 (151)
T 2dbb_A 82 ADKVISEISDIEYVKSVEKG----VGRYNIIVRLLLPKDIKDAENLISEFLQ 129 (151)
T ss_dssp HHHHHHHHTTCTTEEEEEEE----ESSCSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEeEe----cCCCCEEEEEEEcCCHHHHHHHHHHHhh
Confidence 45777888888899999887 556567788999 9998888777 4443
No 324
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=29.09 E-value=47 Score=23.92 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=34.8
Q ss_pred eEEEecCCCCCCHHHHHHHhcc-CC-ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHH
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 96 (210)
..|+.-++..++..+|++.++. |+ .|..|..+.-+ | ..--|||.+....+|....
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~--~-~~KKAiVtL~~g~~aid~~ 150 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP--D-GEKKAYVRLAPDYDALDVA 150 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECS--S-SCEEEEEEECTTSCHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcC--C-CceEEEEEECCCCcHHHHH
Confidence 3556677888899898888876 44 45566444322 1 2446899997665544443
No 325
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=28.87 E-value=1.4e+02 Score=20.41 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=35.0
Q ss_pred HHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhh
Q 028313 52 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 99 (210)
Q Consensus 52 ~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 99 (210)
+.+.+.+..+-+|..|..+ +|...-++.|.+.+.++....+..|
T Consensus 82 ~~~~~~l~~~p~V~~~~~~----~G~~d~~~~v~~~~~~~l~~~l~~l 125 (150)
T 2w25_A 82 DDAPARLEHIEEVESCYSV----AGEASYVLLVRVASARALEDLLQRI 125 (150)
T ss_dssp CCHHHHHTTCTTEEEEEEE----SSSCSEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCeEEEEEe----ECCCCEEEEEEECCHHHHHHHHHHH
Confidence 6788888899999999877 4555667889999999888777654
No 326
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=28.49 E-value=1e+02 Score=19.26 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=35.7
Q ss_pred CHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHH
Q 028313 50 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (210)
Q Consensus 50 te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 96 (210)
..+++.+.+..+-+|.+|..+ +|...-.+.|.+.+.++.+..+
T Consensus 14 ~~~~~~~~l~~~peV~~~~~v----tG~~D~ll~v~~~d~~~l~~~l 56 (92)
T 2djw_A 14 RVQALGEAIAELPQVAEVYSV----TGPYDLVALVRLKDVEELDDVV 56 (92)
T ss_dssp GHHHHHHHHTTSTTEEEEEEE----SSSSSEEEEEEESSGGGHHHHC
T ss_pred CHHHHHHHHhcCCCeEEEEEe----ecCCCEEEEEEECCHHHHHHHH
Confidence 357888888999999999888 6666778889999998888776
No 327
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=27.80 E-value=52 Score=21.67 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhcc-CCceEEEEEec----CCCCCCcceEEEEEecCHHHHHH
Q 028313 48 DCRPEDLRGPFGQ-FGRLKDIYLPR----DYYTGEPRGFGFVQYIDPADAAD 94 (210)
Q Consensus 48 ~~te~~l~~~f~~-~G~i~~v~i~~----~~~~g~~~g~afV~f~~~~~a~~ 94 (210)
.++..+|++.+.+ |+.-..+.++. ....|.+.|||.| |.+.+.|+.
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4567777776654 33212222222 2223556677755 555555543
No 328
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=27.27 E-value=73 Score=22.14 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=29.2
Q ss_pred EecCCCCCCHHHHHHHhc-cCC--ceEEEEEecCC----------CCCCcceEEEEEecC
Q 028313 42 VRNLRHDCRPEDLRGPFG-QFG--RLKDIYLPRDY----------YTGEPRGFGFVQYID 88 (210)
Q Consensus 42 V~nL~~~~te~~l~~~f~-~~G--~i~~v~i~~~~----------~~g~~~g~afV~f~~ 88 (210)
|-.+...++++++.+++. .++ +|..|.+-... ......+|.|+.|.+
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 556777899999999995 343 45554432211 112346788888864
No 329
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=26.80 E-value=35 Score=16.03 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=9.9
Q ss_pred HHHHHHHhccCC
Q 028313 51 PEDLRGPFGQFG 62 (210)
Q Consensus 51 e~~l~~~f~~~G 62 (210)
..+++.+|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 578899999887
No 330
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=26.76 E-value=1.1e+02 Score=18.48 Aligned_cols=60 Identities=8% Similarity=0.081 Sum_probs=32.6
Q ss_pred EEEecCCCCCCHHHHHHHhccCC-ceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCC
Q 028313 40 LLVRNLRHDCRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 101 (210)
Q Consensus 40 l~V~nL~~~~te~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 101 (210)
|.|......-.-.+|..+|...| .|..+.+.... +.......++..+.+..+.+++.|..
T Consensus 8 l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~ 68 (88)
T 2ko1_A 8 IRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKD--GIFTCNLMIFVKNTDKLTTLMDKLRK 68 (88)
T ss_dssp EEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECS--SEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcC--CEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 33333333334678888998876 67777665321 11111112345566777777766654
No 331
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=26.71 E-value=1.4e+02 Score=19.57 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=33.7
Q ss_pred CeEEEecCCCCCCHHHHHHHhcc-------CCceEEEEEecCCCC-C---CcceEEEEEecCHHHHHH
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFGQ-------FGRLKDIYLPRDYYT-G---EPRGFGFVQYIDPADAAD 94 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~~-------~G~i~~v~i~~~~~~-g---~~~g~afV~f~~~~~a~~ 94 (210)
..|.+..|...++++++.++... .-.|..+.+-.+... + ......+++|++.++.+.
T Consensus 12 ~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (112)
T 1q4r_A 12 KHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAE 79 (112)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHH
Confidence 35666788999988776665433 334556655444321 1 222334578999887654
No 332
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=26.67 E-value=1.4e+02 Score=19.57 Aligned_cols=58 Identities=10% Similarity=0.143 Sum_probs=41.0
Q ss_pred ecCCCCCCHHHHHHH----------hccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeE
Q 028313 43 RNLRHDCRPEDLRGP----------FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 104 (210)
Q Consensus 43 ~nL~~~~te~~l~~~----------f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i 104 (210)
-+||.+++.+++.++ ++.-|.+..++-+ .|....++++.-++.++....|..|.-+.+
T Consensus 9 V~~P~~~~~~~~~~~~a~Eka~a~eLq~~G~~~~lWRv----~G~y~nisIfdv~s~~eLh~iL~~LPLfpy 76 (96)
T 1mli_A 9 VKLPVDMDPAKATQLKADEKELAQRLQREGTWRHLWRI----AGHYANYSVFDVPSVEALHDTLMQLPLFPY 76 (96)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeEEEEEe----cCCccEEEEEEcCCHHHHHHHHHhCCCCce
Confidence 378888887665554 4556888888665 566677888888888888877766554443
No 333
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=26.25 E-value=27 Score=28.86 Aligned_cols=47 Identities=21% Similarity=0.104 Sum_probs=30.7
Q ss_pred EEecCCCC---CCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHH
Q 028313 41 LVRNLRHD---CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (210)
Q Consensus 41 ~V~nL~~~---~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 96 (210)
+||||..- -....+.++..+||.|..+.+.. .-+|...+.+.++.++
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~i~~vl 69 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAW---------TPVVVLNGLAAVREAL 69 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETT---------EEEEEEEHHHHHHHHH
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEECC---------eeEEEECCHHHHHHHH
Confidence 46776432 23456778888999998877631 2345556777777776
No 334
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=26.22 E-value=79 Score=26.21 Aligned_cols=49 Identities=14% Similarity=0.040 Sum_probs=28.7
Q ss_pred EEEecCCCC--CCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHH
Q 028313 40 LLVRNLRHD--CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 97 (210)
Q Consensus 40 l~V~nL~~~--~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 97 (210)
-+||||..- -....+.++..+||.|..+.+. +.-+|...+.+.++.++.
T Consensus 18 P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 18 PLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG---------SCPIVVLNGERAIHQALV 68 (507)
T ss_dssp ----------CCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred CeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHH
Confidence 356666432 2245677888899999877653 235677778888888873
No 335
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=25.54 E-value=1.7e+02 Score=20.29 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=36.2
Q ss_pred HHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHH-hhC
Q 028313 51 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY-HMD 100 (210)
Q Consensus 51 e~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~l~ 100 (210)
.+++.+.+..+-+|..|..+ +|...-++.|.+.+.++....+. .|.
T Consensus 85 ~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~~d~~~l~~~l~~~l~ 131 (162)
T 2p5v_A 85 REDFAASVRKWPEVLSCFAL----TGETDYLLQAFFTDMNAFSHFVLDTLL 131 (162)
T ss_dssp HHHHHHHHTTCTTEEEEEEE----SSSCSEEEEEEESSHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcChhhhEeeee----cCCCCEEEEEEECCHHHHHHHHHHHhh
Confidence 56778888889999999887 55556778899999999988773 444
No 336
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=25.28 E-value=1.6e+02 Score=19.75 Aligned_cols=57 Identities=9% Similarity=0.120 Sum_probs=33.8
Q ss_pred CeEEEecCCCCCCHHHHHHHhc-------cCCceEEEEEecCCCC-CC--cceEE-EEEecCHHHHHH
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFG-------QFGRLKDIYLPRDYYT-GE--PRGFG-FVQYIDPADAAD 94 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~-------~~G~i~~v~i~~~~~~-g~--~~g~a-fV~f~~~~~a~~ 94 (210)
..|.+..|...++++++.+++. +...|..+.+-.+... +. .-.++ +++|++.++.+.
T Consensus 22 ~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~ 89 (121)
T 3bb5_A 22 YHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDA 89 (121)
T ss_dssp EEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHH
Confidence 4466678998888776555543 3445666665444321 22 22344 568888877654
No 337
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=24.21 E-value=1.2e+02 Score=21.82 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=28.4
Q ss_pred CCHHHHHHHhccCCceE---EEEEecCCCCCCcceEEEEE
Q 028313 49 CRPEDLRGPFGQFGRLK---DIYLPRDYYTGEPRGFGFVQ 85 (210)
Q Consensus 49 ~te~~l~~~f~~~G~i~---~v~i~~~~~~g~~~g~afV~ 85 (210)
.++++|.++-.+.|.+. .+.|..+..+|....+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58899999999999774 56666664488888888764
No 338
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=23.81 E-value=42 Score=29.25 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=26.9
Q ss_pred HHHHhc--cCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHH
Q 028313 54 LRGPFG--QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 96 (210)
Q Consensus 54 l~~~f~--~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 96 (210)
|..+|. .+|-|.++.|...+.. .....+++.|.+.++|..|+
T Consensus 250 l~~L~~~GtlGiIt~~tl~l~p~p-~~~~~~~~~f~~~~~a~~~~ 293 (560)
T 1e8g_A 250 IDGLFSQSNMGIVTKIGIWLMPNP-GGYQSYLITLPKDGDLKQAV 293 (560)
T ss_dssp CGGGGSSSSSEEEEEEEEECEECC-SCEEEEEEEECSTTHHHHHH
T ss_pred hhcccccCcEEEEEEEEEEEEeCC-CceEEEEEEcCCHHHHHHHH
Confidence 344553 4788888877655422 23467788999888876654
No 339
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=23.77 E-value=1.1e+02 Score=19.69 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=19.4
Q ss_pred ceEEEEEecCCCCCCcceEEEEEecC
Q 028313 63 RLKDIYLPRDYYTGEPRGFGFVQYID 88 (210)
Q Consensus 63 ~i~~v~i~~~~~~g~~~g~afV~f~~ 88 (210)
+|..|.+..-...|..++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 46677665555568889999999974
No 340
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=23.04 E-value=42 Score=21.56 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=24.3
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHhccC
Q 028313 34 RDLPTSLLVRNLRHDCRPEDLRGPFGQF 61 (210)
Q Consensus 34 ~~~~~~l~V~nL~~~~te~~l~~~f~~~ 61 (210)
-+.+..|.|.+.+..++.++.++|+..|
T Consensus 16 lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 16 LNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred cCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 3567889999999999999999998887
No 341
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=22.95 E-value=93 Score=20.27 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=15.9
Q ss_pred CCHHHHHHHhccCCceEEEEE
Q 028313 49 CRPEDLRGPFGQFGRLKDIYL 69 (210)
Q Consensus 49 ~te~~l~~~f~~~G~i~~v~i 69 (210)
.+++.|.++|..+|.|..-.+
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~M 24 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSM 24 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEE
T ss_pred hHHHHHHHHHhccCCceEeec
Confidence 356778899999998875443
No 342
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=22.69 E-value=42 Score=19.85 Aligned_cols=10 Identities=40% Similarity=0.574 Sum_probs=7.7
Q ss_pred ceEEEEEecC
Q 028313 79 RGFGFVQYID 88 (210)
Q Consensus 79 ~g~afV~f~~ 88 (210)
...|+|.|.+
T Consensus 31 ~~~clV~F~D 40 (58)
T 4hcz_A 31 REVCLVQFED 40 (58)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEEEcC
Confidence 4578999975
No 343
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=22.53 E-value=1.2e+02 Score=17.33 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=15.7
Q ss_pred ceEEEEEecCHHHHHHHHHh
Q 028313 79 RGFGFVQYIDPADAADAKYH 98 (210)
Q Consensus 79 ~g~afV~f~~~~~a~~A~~~ 98 (210)
.+-.|-.|.+.++|+.+|..
T Consensus 31 ~ga~yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 31 PAARFKKFATEDEAWAFVRK 50 (53)
T ss_dssp TTCEEEEESSHHHHHHHHHC
T ss_pred CCCccCCCCCHHHHHHHHHh
Confidence 44567889999999988854
No 344
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=22.49 E-value=93 Score=16.81 Aligned_cols=54 Identities=7% Similarity=-0.042 Sum_probs=30.6
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec-CHHHHHHHHHh
Q 028313 39 SLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI-DPADAADAKYH 98 (210)
Q Consensus 39 ~l~V~nL~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~a~~A~~~ 98 (210)
++.|.++.-..-...|+..+.....|..+.+... .+.+.|++. +.++...+|+.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~i~~~i~~ 58 (64)
T 2xmm_A 4 QLTVPTIACEACAEAVTKAVQNEDAQATVQVDLT------SKKVTITSALGEEQLRTAIAS 58 (64)
T ss_dssp EEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTT------TCEEEEECSSCHHHHHHHHHH
T ss_pred EEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEec------CCEEEEEecCCHHHHHHHHHH
Confidence 3555555544445667777777656666665433 345555543 44555566644
No 345
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=22.29 E-value=1.9e+02 Score=19.64 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=38.1
Q ss_pred CCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHH-HhhCC
Q 028313 49 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK-YHMDG 101 (210)
Q Consensus 49 ~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~l~g 101 (210)
...+++.+.+..+.+|..|..+ +|...-++.|.+.+.++....+ +.|..
T Consensus 76 ~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~l~~~l~~ 125 (150)
T 2pn6_A 76 NYHVELGNKLAQIPGVWGVYFV----LGDNDFIVMARYKTREEFMEKFLERVMS 125 (150)
T ss_dssp THHHHHHHHHHTSTTEEEEEEC----SSSCSEEEEEEESSHHHHHHHTHHHHTT
T ss_pred hHHHHHHHHHhcCchhhhhhhh----cCcCCEEEEEEECCHHHHHHHHHHHhcc
Confidence 3457788888899999999876 5666678889999999988877 55553
No 346
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.37 E-value=1.3e+02 Score=19.93 Aligned_cols=62 Identities=15% Similarity=0.020 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEEee
Q 028313 46 RHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 115 (210)
Q Consensus 46 ~~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~a~ 115 (210)
+..+++++|+.++...-.+..+.|..-...+. -|...+..+.+.|++.. .-.|..|++.+.+
T Consensus 33 ~~~~tweel~~mvk~~f~L~~~~IkY~DEenD-----~V~i~Sq~E~eEAlkva---~k~~n~L~m~V~~ 94 (101)
T 1wj6_A 33 PENTTWADIEAMVKVSFDLNTIQIKYLDEENE-----EVSINSQGEYEEALKMA---VKQGNQLQMQVHE 94 (101)
T ss_dssp TTTSCHHHHHHHHHHHHCCSSBCCEEECTTSC-----EECCCSHHHHHHHHHHH---HHHTSEEEEECCB
T ss_pred CCCCCHHHHHHHHHHHcCCCceEEEEecCCCC-----EEEEecHHHHHHHHHHh---ccCCCEEEEEEee
Confidence 44889999999986432333333322111222 24455677777777531 1125557776654
No 347
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=21.24 E-value=1.6e+02 Score=23.13 Aligned_cols=34 Identities=9% Similarity=-0.103 Sum_probs=22.0
Q ss_pred eEEEEEecCHHHHHHHHHhhCCeeEcCeEEEEEE
Q 028313 80 GFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 113 (210)
Q Consensus 80 g~afV~f~~~~~a~~A~~~l~g~~i~g~~i~v~~ 113 (210)
..+|..|.+.+.|+++.+.|...-+.+..+.+..
T Consensus 259 ptvfal~~~~~~a~~~~~~l~~~g~~~~v~~~~~ 292 (306)
T 3pyf_A 259 PTCAFLCTSASSAIDVGAQLSGAGVCRTVRVATG 292 (306)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTTSSSEEEEEEE
T ss_pred hhheEEeCCHHHHHHHHHHHHhcCCcceEEEeec
Confidence 4567788888888888777764434444444443
No 348
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=21.23 E-value=1.2e+02 Score=20.19 Aligned_cols=26 Identities=8% Similarity=0.040 Sum_probs=19.5
Q ss_pred CCcceEEEEEecCHHHHHHHHHhhCCe
Q 028313 76 GEPRGFGFVQYIDPADAADAKYHMDGY 102 (210)
Q Consensus 76 g~~~g~afV~f~~~~~a~~A~~~l~g~ 102 (210)
+....-.-+.|.+.|+|.+.++. +|.
T Consensus 48 ~D~~~qv~L~F~skE~AiayAek-~G~ 73 (106)
T 2jya_A 48 SDMKQQVKLTFETQEQAEAYAQR-KGI 73 (106)
T ss_dssp CCSEEEEEEEESSHHHHHHHHHH-HTC
T ss_pred CCccccceEecCCHHHHHHHHHH-cCC
Confidence 45566678999999999988755 553
No 349
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=20.94 E-value=14 Score=28.32 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHhccCCceEEEEEecCCCCCCcceEEEEEec---CHHHHHHH---HHhhCCeeE---cCeEEEEEEee
Q 028313 47 HDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI---DPADAADA---KYHMDGYLL---LGRELTVVFAE 115 (210)
Q Consensus 47 ~~~te~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~---~~~~a~~A---~~~l~g~~i---~g~~i~v~~a~ 115 (210)
.++...+|.++|..++.+..+.++.++. -+|..-+.|. +.+++..+ +-.++|..+ .|..|.|..+.
T Consensus 11 l~f~~~~i~~vl~~la~~~g~n~vvd~~---V~G~vtl~~~~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~ 85 (241)
T 3ezj_A 11 ANFKDTDLKSFIETVGANLNKTIIMGPG---VQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSS 85 (241)
T ss_dssp CEEEEEEHHHHHHHHHHHHTCEEEC------CCCEEEEEESSCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC-
T ss_pred EEeCCCCHHHHHHHHHHHhCCeEEECCC---CcceEEEEeCCCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhH
Confidence 3445566777777777777676666652 2444445553 45555444 336788654 58888887654
No 350
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=20.80 E-value=44 Score=20.64 Aligned_cols=10 Identities=40% Similarity=1.039 Sum_probs=7.5
Q ss_pred ceEEEEEecC
Q 028313 79 RGFGFVQYID 88 (210)
Q Consensus 79 ~g~afV~f~~ 88 (210)
+||+||+-.+
T Consensus 14 KGfGFI~~~d 23 (74)
T 2k5n_A 14 KGFGFIKDEN 23 (74)
T ss_dssp TTEEEEEESS
T ss_pred CCeEEEecCC
Confidence 7888887654
No 351
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=20.20 E-value=2e+02 Score=19.16 Aligned_cols=56 Identities=7% Similarity=0.007 Sum_probs=32.3
Q ss_pred CeEEEecCCCCCCHHHHHHHhc------cCCceEEEEEecCCCC----C--CcceEE-EEEecCHHHHH
Q 028313 38 TSLLVRNLRHDCRPEDLRGPFG------QFGRLKDIYLPRDYYT----G--EPRGFG-FVQYIDPADAA 93 (210)
Q Consensus 38 ~~l~V~nL~~~~te~~l~~~f~------~~G~i~~v~i~~~~~~----g--~~~g~a-fV~f~~~~~a~ 93 (210)
..|.+..|...++++++.++.. +...|..+.+-.+... + ..-.+| +++|++.++.+
T Consensus 22 ~HIVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~ 90 (120)
T 3bn7_A 22 FHQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQK 90 (120)
T ss_dssp EEEEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHH
Confidence 4466678888888877655543 2334556665544332 1 223344 46888877754
Done!