BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028315
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 170 bits (431), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 117/173 (67%), Gaps = 5/173 (2%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDP--SPTIGVDFKIKLLTVGGKRLKLTIWDTAG 70
+ KIL+IG+SGVGK DP + TIGVDFK+K ++V G + KL IWDTAG
Sbjct: 15 TLKILIIGESGVGKSSLLLRFTDD-TFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 73
Query: 71 QERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD 130
QERF TLT SYYRGA G+ILVYDVTRR+TF L + W E+E Y T D V LVGNK+D
Sbjct: 74 QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNXLVGNKID 132
Query: 131 RDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSLLE 183
+++ R V R EG+ A++H LF+E SAK + V+ F++L+ KI++ P L E
Sbjct: 133 KEN-REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGLWE 184
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 111/166 (66%), Gaps = 3/166 (1%)
Query: 7 NNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTI 65
N YDY FK+LLIGDSGVGK D TIGVDFKI+ +++ K +KL I
Sbjct: 3 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQI 62
Query: 66 WDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILV 125
WDTAGQERF T+TSSYYRGAHGII+VYDVT R++F N+ W +E++ Y+ ++ K+LV
Sbjct: 63 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQ-WIQEIDRYAM-ENVNKLLV 120
Query: 126 GNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDL 171
GNK D S+R VT +EG LA H F+E SAKN +V+Q F +
Sbjct: 121 GNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTM 166
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 149 bits (377), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 124/209 (59%), Gaps = 10/209 (4%)
Query: 7 NNSYDYSFKILLIGDSGVGKX-XXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTI 65
N+ YDY FK+LLIG+SGVGK +D TIGVDFKIK + + GK +KL I
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 66 WDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILV 125
WDTAGQERF T+TSSYYRG+HGII+VYDVT +E+F N +W +E++ Y+T+ +K+LV
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATST-VLKLLV 119
Query: 126 GNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSLLEQG 185
GNK D +R V + A +K FLE SA ++ +V+ F + +I E S
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN 179
Query: 186 SAVVK-----NQILKQKEVQESARGGNCC 209
K N LK + + + GG CC
Sbjct: 180 ETTQKKEDKGNVNLKGQSLTNT--GGGCC 206
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 114/173 (65%), Gaps = 7/173 (4%)
Query: 8 NSYDYSFKILLIGDSGVGKX---XXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLT 64
++Y Y FK ++IGD+GVGK VHD TIGV+F +++T+ GK++KL
Sbjct: 5 SAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMITIDGKQIKLQ 62
Query: 65 IWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKIL 124
IWDTAGQE F ++T SYYRGA G +LVYD+TRR+TF +L++ W ++ +S N + V +L
Sbjct: 63 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTT-WLEDARQHS-NSNMVIML 120
Query: 125 VGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
+GNK D +S R V +EEG A+EH +F+E SAK +V++ F + +I E
Sbjct: 121 IGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYE 173
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 7 NNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTI 65
N YDY FK+LLIGDSGVGK + TIGVDFKI+ + + GK +KL I
Sbjct: 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 66 WDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILV 125
WDTAGQERF T+TSSYYRGAHGII+VYDVT +E+F N+ W +E++ Y++ ++ K+LV
Sbjct: 70 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLV 127
Query: 126 GNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
GNK D +++ V A FLE SAKN +V+Q F + +I
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 7 NNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTI 65
N YDY FK+LLIGDSGVGK + TIGVDFKI+ + + GK +KL I
Sbjct: 10 NPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 66 WDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILV 125
WDTAGQERF T+TSSYYRGAHGII+VYDVT +E+F N+ W +E++ Y++ ++ K+LV
Sbjct: 70 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLV 127
Query: 126 GNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
GNK D +++ V A FLE SAKN +V+Q F + +I
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 113/175 (64%), Gaps = 3/175 (1%)
Query: 7 NNSYDYSFKILLIGDSGVGKX-XXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTI 65
N+ YDY FK+LLIG+SGVGK +D TIGVDFKIK + + GK +KL I
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 66 WDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILV 125
WDTAGQERF T+TSSYYRG+HGII+VYDVT +E+F N +W +E++ Y+T+ +K+LV
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATST-VLKLLV 119
Query: 126 GNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPS 180
GNK D +R V + A +K FLE SA ++ +V+ F + +I E S
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 109/171 (63%), Gaps = 3/171 (1%)
Query: 6 GNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLT 64
G+ YDY FK+LLIGDSGVGK + TIGVDFKI+ + + GK +KL
Sbjct: 18 GSPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 77
Query: 65 IWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKIL 124
IWDTAGQERF T+TSSYYRGAHGII+VYDVT +E+F N+ W +E++ Y++ ++ K+L
Sbjct: 78 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLL 135
Query: 125 VGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
VGNK D +++ V A FLE SAKN +V+Q F + +I
Sbjct: 136 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 108/178 (60%), Gaps = 3/178 (1%)
Query: 1 MGSKVGNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPSP-TIGVDFKIKLLTVGGK 59
+GS +Y Y FK ++IGD GVGK P TIGV+F +++ V G+
Sbjct: 3 LGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ 62
Query: 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQD 119
++KL IWDTAGQERF +T SYYRGA G ++VYD+TRR T+ +LSS L TN +
Sbjct: 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPN 120
Query: 120 CVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
V IL+GNK D +++R VT EE A+E+ LFLE SAK E+V+ F + KI +
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/163 (49%), Positives = 105/163 (64%), Gaps = 3/163 (1%)
Query: 7 NNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTI 65
N YDY FK+LLIGDSGVGK + TIGVDFKI+ + + GK +KL I
Sbjct: 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 66 WDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILV 125
WDTAGQERF T+TSSYYRGAHGII+VYDVT +E+F N+ W +E++ Y++ ++ K+LV
Sbjct: 87 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLV 144
Query: 126 GNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168
GNK D +++ V A FLE SAKN +V+Q F
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 107/167 (64%), Gaps = 3/167 (1%)
Query: 10 YDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDT 68
YDY FK+LLIGDSGVGK + TIGVDFKI+ + + GK +KL IWDT
Sbjct: 3 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 69 AGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128
AGQERF T+TSSYYRGAHGII+VYDVT +E+F N+ W +E++ Y++ ++ K+LVGNK
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNK 120
Query: 129 VDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
D +++ V A FLE SAKN +V+Q F + +I
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/167 (47%), Positives = 107/167 (64%), Gaps = 3/167 (1%)
Query: 10 YDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDT 68
YDY FK+LLIGDSGVGK + TIGVDFKI+ + + GK +KL IWDT
Sbjct: 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 69 AGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128
AGQERF T+TSSYYRGAHGII+VYDVT +E++ N+ W +E++ Y++ ++ K+LVGNK
Sbjct: 66 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGNK 123
Query: 129 VDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
D +++ V A FLE SAKN +V+Q F + +I
Sbjct: 124 SDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 111/173 (64%), Gaps = 3/173 (1%)
Query: 5 VGNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKL 63
+G+ +YD+ FK L+IG++G GK D S TIGV+F K++ VGGK +KL
Sbjct: 3 LGSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKL 62
Query: 64 TIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKI 123
IWDTAGQERF ++T SYYRGA G +LVYD+T RET+ L++ W + + ++ Q+ V I
Sbjct: 63 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVII 120
Query: 124 LVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKIL 176
L GNK D D++R VT E AQE++ +FLE SA EDV++ F KIL
Sbjct: 121 LCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 173
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/167 (47%), Positives = 107/167 (64%), Gaps = 3/167 (1%)
Query: 10 YDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDT 68
YDY FK+LLIGDSGVGK + TIGVDFKI+ + + GK +KL IWDT
Sbjct: 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 69 AGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128
AGQERF T+TSSYYRGAHGII+VYDVT +E++ N+ W +E++ Y++ ++ K+LVGNK
Sbjct: 66 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGNK 123
Query: 129 VDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
D +++ V A FLE SAKN +V+Q F + +I
Sbjct: 124 SDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 114/178 (64%), Gaps = 4/178 (2%)
Query: 2 GSKVGNNS-YDYSFKILLIGDSGVGKX-XXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGK 59
GS V S YDY FK+LLIG+SGVGK +D TIGVDFKIK + + GK
Sbjct: 9 GSLVPRGSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK 68
Query: 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQD 119
+KL IWDTAGQERF T+TSSYYRG+HGII+VYDVT +E+F N +W +E++ Y+T+
Sbjct: 69 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATST- 126
Query: 120 CVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
+K+LVGNK D +R V + A +K FLE SA ++ +V+ F + +I E
Sbjct: 127 VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 110/171 (64%), Gaps = 6/171 (3%)
Query: 9 SYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLTVGGKRLKLTIW 66
SYD KILLIGDSGVGK + PS TIG+DFKIK + + GK++KL +W
Sbjct: 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLW 74
Query: 67 DTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVG 126
DTAGQERF T+T++YYRGA GIILVYDVT TFTN+ W K V ++ N + +LVG
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVG 132
Query: 127 NKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
NK D ++ R VT ++G LA+E F+E SAKN ++V + F L I E
Sbjct: 133 NKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 107/170 (62%), Gaps = 3/170 (1%)
Query: 7 NNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTI 65
N YDY FK+LLIGDSGVGK + TIGVDFKI+ + + GK +KL I
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 66 WDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILV 125
WDTAGQERF T+TSSYYRGAHGII+VYDVT +E+F N+ W +E++ Y++ ++ K+LV
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLV 119
Query: 126 GNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
G K D +++ V A FLE SAKN +V+Q F + +I
Sbjct: 120 GIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 108/161 (67%), Gaps = 3/161 (1%)
Query: 9 SYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWD 67
+YDY FK+LLIGDSGVGK + TIG+DFKI+ + + GKR+KL IWD
Sbjct: 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63
Query: 68 TAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGN 127
TAGQERF T+T++YYRGA GI+LVYD+T ++F N+ + W + +E +++ D K+++GN
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMILGN 121
Query: 128 KVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168
K D + +R V++E G LA ++ F+E SAK +V+ F
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 143 bits (361), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/167 (47%), Positives = 106/167 (63%), Gaps = 3/167 (1%)
Query: 10 YDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDT 68
YD FK+LLIGDSGVGK + TIGVDFKI+ + + GK +KL IWDT
Sbjct: 3 YDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 69 AGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128
AGQERF T+TSSYYRGAHGII+VYDVT +E+F N+ W +E++ Y++ ++ K+LVGNK
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNK 120
Query: 129 VDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
D +++ V A FLE SAKN +V+Q F + +I
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 109/172 (63%), Gaps = 3/172 (1%)
Query: 6 GNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLT 64
G+ +YD+ FK L+IG++G GK D S TIGV+F K++ VGGK +KL
Sbjct: 1 GSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 60
Query: 65 IWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKIL 124
IWDTAG ERF ++T SYYRGA G +LVYD+T RET+ L++ W + + ++ Q+ V IL
Sbjct: 61 IWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIIL 118
Query: 125 VGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKIL 176
GNK D D++R VT E AQE++ +FLE SA EDV++ F KIL
Sbjct: 119 CGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 170
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 143 bits (360), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 107/160 (66%), Gaps = 7/160 (4%)
Query: 12 YSFKILLIGDSGVGKX---XXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDT 68
Y FK ++IGD+GVGK VHD TIGV+F +++ + GK++KL IWDT
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMVNIDGKQIKLQIWDT 77
Query: 69 AGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128
AGQE F ++T SYYRGA G +LVYD+TRRETF +L+S W ++ +S++ + V +L+GNK
Sbjct: 78 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHSSS-NMVIMLIGNK 135
Query: 129 VDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168
D +S R V REEG A+EH +F+E SAK +V++ F
Sbjct: 136 SDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 142 bits (359), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 108/169 (63%), Gaps = 3/169 (1%)
Query: 9 SYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWD 67
+YD+ FK L+IG++G GK D S TIGV+F K++ VGGK +KL IWD
Sbjct: 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65
Query: 68 TAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGN 127
TAGQERF ++T SYYRGA G +LVYD+T RET+ L++ W + + ++ Q+ V IL GN
Sbjct: 66 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCGN 123
Query: 128 KVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKIL 176
K D D++R VT E AQE++ +FLE SA E+V++ F KIL
Sbjct: 124 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 172
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Query: 9 SYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPSP-TIGVDFKIKLLTVGGKRLKLTIWD 67
+Y Y FK ++IGD GVGK P TIGV+F +++ V G+++KL IWD
Sbjct: 26 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 85
Query: 68 TAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGN 127
TAGQ RF +T SYYRGA G ++VYD+TRR T+ +LSS L TN + V IL+GN
Sbjct: 86 TAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIILIGN 143
Query: 128 KVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
K D +++R VT EE A+E+ LFLE SAK E+V+ F + KI +
Sbjct: 144 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 193
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 105/160 (65%), Gaps = 6/160 (3%)
Query: 11 DYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLTVGGKRLKLTIWDT 68
D KILLIGDSGVGK + PS TIG+DFKIK + + GK++KL IWDT
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDT 59
Query: 69 AGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128
AGQERF T+T++YYRGA GIILVYD+T TFTN+ W K V ++ N + +LVGNK
Sbjct: 60 AGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNK 117
Query: 129 VDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168
D ++ R VT ++G LA+E F+E SAKN ++V + F
Sbjct: 118 SDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 104/156 (66%), Gaps = 6/156 (3%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
KILLIGDSGVGK + PS TIG+DFKIK + + GK++KL IWDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
RF T+T++YYRGA GIILVYD+T TFTN+ W K V ++ N + +LVGNK D +
Sbjct: 64 RFRTITTAYYRGAXGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDXE 121
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168
+ R VT ++G LA+E F+E SAKN ++V + F
Sbjct: 122 T-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 106/159 (66%), Gaps = 3/159 (1%)
Query: 11 DYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
DY FK+LLIGDSGVGK + TIG+DFKI+ + + GKR+KL IWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKV 129
GQERF T+T++YYRGA GI+LVYD+T ++F N+ + W + +E +++ D K+++GNK
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMILGNKC 121
Query: 130 DRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168
D + +R V++E G LA ++ F+E SAK +V+ F
Sbjct: 122 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 160
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 140 bits (353), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 107/165 (64%), Gaps = 6/165 (3%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
KILLIGDSGVGK +PS TIG+DFKIK + + GK++KL +WDTAGQE
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
RF T+T++YYRGA GIILVYDVT TFTN+ W K V ++ N + +LVGNK D +
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDME 125
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
+ R VT ++G LA+E F+E SAKN ++V + F L I E
Sbjct: 126 T-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 169
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 140 bits (353), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 104/156 (66%), Gaps = 6/156 (3%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
KILLIGDSGVGK + PS TIG+DFKIK + + GK++KL +WDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 63
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
RF T+T++YYRGA GIILVYDVT TFTN+ W K V ++ N + +LVGNK D +
Sbjct: 64 RFRTITTAYYRGAXGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDXE 121
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168
+ R VT ++G LA+E F+E SAKN ++V + F
Sbjct: 122 T-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 103/162 (63%), Gaps = 3/162 (1%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K+LLIGDSGVGK + TIGVDFKI+ + + GK +KL IWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133
F T+TSSYYRGAHGII+VYDVT +E+F N+ W +E++ Y++ ++ K+LVGNK D +
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCDLTT 118
Query: 134 ERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
++ V A FLE SAKN +V+Q F + +I
Sbjct: 119 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 105/166 (63%), Gaps = 5/166 (3%)
Query: 9 SYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLTVGGKRLKLTIW 66
++DY FK+L+IG+S VGK P+ T+G+DFK+K + KR+KL IW
Sbjct: 19 NFDYMFKLLIIGNSSVGKTSFLFRYADD-TFTPAFVSTVGIDFKVKTVYRHEKRVKLQIW 77
Query: 67 DTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVG 126
DTAGQER+ T+T++YYRGA G IL+YD+T E+F N WA +++ YS + V ILVG
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQV-ILVG 135
Query: 127 NKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172
NK D + ER V E+G +LA++ F E SAK V+Q F+ L+
Sbjct: 136 NKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 106/171 (61%), Gaps = 5/171 (2%)
Query: 9 SYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLTVGGKRLKLTIW 66
++DY FKIL+IG+S VGK P+ T+G+DFK+K + KR+KL IW
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTIYRNDKRIKLQIW 59
Query: 67 DTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVG 126
DTAGQER+ T+T++YYRGA G IL+YD+T E+F N W+ +++ YS + V +LVG
Sbjct: 60 DTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQV-LLVG 117
Query: 127 NKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
NK D + ER V+ E G LA F E SAK+ +VKQ F+ L+ I E
Sbjct: 118 NKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 110/180 (61%), Gaps = 8/180 (4%)
Query: 6 GNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLTVGGKRLKL 63
G + YD +FK++L+GDSGVGK + T+G+DF+ K+L V G ++KL
Sbjct: 3 GVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKL 62
Query: 64 TIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKI 123
+WDTAGQERF ++T +YYR AH ++L+YDVT + +F N+ + W E+ Y+ D +
Sbjct: 63 QMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQA-WLTEIHEYA-QHDVALM 120
Query: 124 LVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF----KDLLYKILEVP 179
L+GNKVD ER V RE+G LA+E+ F+E SAK +V F K+L + ++ P
Sbjct: 121 LLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKAP 180
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 106/174 (60%), Gaps = 5/174 (2%)
Query: 6 GNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLTVGGKRLKL 63
G++ +DY FKIL+IG+S VGK P+ T+G+DFK+K + KR+KL
Sbjct: 1 GSHXFDYXFKILIIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTIYRNDKRIKL 59
Query: 64 TIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKI 123
IWDTAG ER+ T+T++YYRGA G IL YD+T E+F N W+ +++ YS + V +
Sbjct: 60 QIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQV-L 117
Query: 124 LVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
LVGNK D + ER V+ E G LA F E SAK+ +VKQ F+ L+ I E
Sbjct: 118 LVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 171
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 103/170 (60%), Gaps = 5/170 (2%)
Query: 10 YDYSFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDT 68
YD FKI+LIGDSGVGK + D TIGV+F + L + GKR+K IWDT
Sbjct: 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDT 69
Query: 69 AGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKI-LVGN 127
AGQER+ +TS+YYRGA G ++VYD+++ ++ N + W EL D V + L+GN
Sbjct: 70 AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLS--ELRENADDNVAVGLIGN 126
Query: 128 KVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
K D RAV EE AQE++ LF E SA N+E+V + F++L+ I +
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQ 176
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 111/169 (65%), Gaps = 4/169 (2%)
Query: 11 DYSFKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTA 69
D+ ++++IG GVGK + T+GVDFKIK + + GK+++L IWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKV 129
GQERF ++TS+YYR A GIILVYD+T++ETF +L W K ++ Y++ +D +LVGNK+
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYAS-EDAELLLVGNKL 141
Query: 130 DRDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKILE 177
D +++R +TR++G AQ+ + F E SAK+ +V + F L+ IL+
Sbjct: 142 DCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 5/169 (2%)
Query: 10 YDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLTVGGKRLKLTIWD 67
YD+ FKI+LIG++GVGK + P TIGVDF IK + + G+++KL IWD
Sbjct: 23 YDFLFKIVLIGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 81
Query: 68 TAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGN 127
TAGQERF ++T SYYR A+ +IL YD+T E+F L W +E+E Y++N+ + +LVGN
Sbjct: 82 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYASNK-VITVLVGN 139
Query: 128 KVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKIL 176
K+D R V+++ ++ +LE SAK +++V++ F DL +++
Sbjct: 140 KIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 133 bits (334), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 104/169 (61%), Gaps = 5/169 (2%)
Query: 11 DYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLTVGGKRLKLTIWDT 68
DY FK+LLIG+S VGK P+ T+G+DFK+K + KR+KL IWDT
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTVYRHDKRIKLQIWDT 78
Query: 69 AGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128
AGQER+ T+T++YYRGA G +L+YD+ +E+F + WA +++ YS + V ILVGNK
Sbjct: 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNAQV-ILVGNK 136
Query: 129 VDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
D + ER V E+G LA + F E SAK +VKQ F+ L+ I E
Sbjct: 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 133 bits (334), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 98/159 (61%), Gaps = 3/159 (1%)
Query: 11 DYSFKILLIGDSGVGKXXXXXXXXXXXV-HDPSPTIGVDFKIKLLTVGGKRLKLTIWDTA 69
D+ FK L+IG +G GK D + TIGV+F +++ VGGK +KL IWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKV 129
GQERF ++T SYYRGA G +LVYD+T RET+ +L++ L S N V IL GNK
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKK 140
Query: 130 DRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168
D D ER VT E AQE++ +FLE SA E+V++ F
Sbjct: 141 DLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 108/178 (60%), Gaps = 3/178 (1%)
Query: 2 GSKVGNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKR 60
GS V SYDY FK++LIGDSGVGK + + TIGV+F + + V GK
Sbjct: 9 GSLVPRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 68
Query: 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDC 120
+K IWDTAGQER+ +TS+YYRGA G +LVYD+ + T+ N+ W KE+ ++ + +
Sbjct: 69 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSNI 126
Query: 121 VKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEV 178
V +LVGNK D RAV +E A+++ F+E SA ++ +V+ F+ +L +I +
Sbjct: 127 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 101/172 (58%), Gaps = 13/172 (7%)
Query: 10 YDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDT 68
YD+ FK+L+IGDSGVGK TIGVDFKI+ + + G+++KL IWDT
Sbjct: 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDT 65
Query: 69 AGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDC---VKILV 125
AGQERF T+TS+YYRG HG+I+VYDVT E+F N+ W E+ NQ+C +ILV
Sbjct: 66 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEI-----NQNCDDVCRILV 119
Query: 126 GNKVDRDSERAVTREEGMILAQEHKCLFLECSAK---NTEDVKQCFKDLLYK 174
GNK D + V E+ A + E SAK N E++ C +L+ +
Sbjct: 120 GNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 107/172 (62%), Gaps = 3/172 (1%)
Query: 10 YDYSFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDT 68
YDY FK++LIGDSGVGK + + TIGV+F + + V GK +K IWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 69 AGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128
AGQER+ +TS+YYRGA G +LVYD+ + T+ N+ W KE+ ++ + + V +LVGNK
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSNIVIMLVGNK 119
Query: 129 VDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPS 180
D RAV +E A+++ F+E SA ++ +V++ FK++L +I + S
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS 171
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 104/169 (61%), Gaps = 4/169 (2%)
Query: 2 GSKVGNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHD-PSPTIGVDFKIKLLTVGGKR 60
GS + YD+ FK++L+GD+ VGK + TIGVDF +K L + GKR
Sbjct: 18 GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77
Query: 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDC 120
+KL IWDTAGQERF T+T SYYR A+G IL YD+T+R +F ++ W ++V Y+ +
Sbjct: 78 VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNI 135
Query: 121 VKILVGNKVDRDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCF 168
V++L+GNK D R V+ E LA+ + L +E SAK++ +V++ F
Sbjct: 136 VQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 109/176 (61%), Gaps = 5/176 (2%)
Query: 1 MGSKVGNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGK 59
MG++ ++ YDY FK++LIGDSGVGK + + TIGV+F + + V GK
Sbjct: 19 MGTR--DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 76
Query: 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQD 119
+K IWDTAGQER+ +TS+YYRGA G +LVYD+ + T+ N+ W KE+ ++ + +
Sbjct: 77 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSN 134
Query: 120 CVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
V +LVGNK D RAV +E A+++ F+E SA ++ +V+ F+ +L +I
Sbjct: 135 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 106/174 (60%), Gaps = 3/174 (1%)
Query: 6 GNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLT 64
G++ YDY FK++LIGDSGVGK + + TIGV+F + + V GK +K
Sbjct: 1 GSDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 60
Query: 65 IWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKIL 124
IWDTAG ER+ +TS+YYRGA G +LVYD+ + T+ N+ W KE+ ++ + + V +L
Sbjct: 61 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSNIVIML 118
Query: 125 VGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEV 178
VGNK D RAV +E A+++ F+E SA ++ +V+ F+ +L +I +
Sbjct: 119 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 103/173 (59%), Gaps = 5/173 (2%)
Query: 10 YDYSFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDT 68
YDY FKI+LIGDSGVGK + + TIGV+F + + V K++K IWDT
Sbjct: 7 YDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDT 66
Query: 69 AGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKI-LVGN 127
AG ER+ +TS+YYRGA G ++VYD+++ ++ N + W EL D V + L+GN
Sbjct: 67 AGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WL--TELRENADDNVAVGLIGN 123
Query: 128 KVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPS 180
K D RAV +E A E++ LF E SA N+++V + F++L+ I ++ S
Sbjct: 124 KSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVS 176
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 1 MGSKVGNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGK 59
MG++ ++ YDY FK++LIGDSGVGK + + TIGV+F + + V GK
Sbjct: 19 MGTR--DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 76
Query: 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQD 119
+K IWDTAG ER+ +TS+YYRGA G +LVYD+ + T+ N+ W KE+ ++ + +
Sbjct: 77 TIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSN 134
Query: 120 CVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
V +LVGNK D RAV +E A+++ F+E SA ++ +V+ F+ +L +I
Sbjct: 135 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 107/176 (60%), Gaps = 5/176 (2%)
Query: 1 MGSKVGNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGK 59
MG++ ++ YDY FK++LIGDSGVGK + + TIGV+F + + V GK
Sbjct: 1 MGTR--DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 58
Query: 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQD 119
+K IWDTAG ER+ +TS+YYRGA G +LVYD+ + T+ N+ W KE+ ++ + +
Sbjct: 59 TIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSN 116
Query: 120 CVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
V LVGNK D RAV +E A+++ F+E SA ++ +V+ F+ +L +I
Sbjct: 117 IVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 101/173 (58%), Gaps = 5/173 (2%)
Query: 6 GNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXV-HDPSPTIGVDFKIKLLTVGGKRLKLT 64
G+ Y++ FK++LIG+SGVGK HD TIGV+F + + +G +K
Sbjct: 18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQ 77
Query: 65 IWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYS-TNQDCVKI 123
IWDTAG ER+ +TS+YYRGA G +LV+D+T+ +T+ + W K ELY V +
Sbjct: 78 IWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVER-WLK--ELYDHAEATIVVM 134
Query: 124 LVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKIL 176
LVGNK D R V EE + A+ + LFLE SA ++ +V+ F+ +L +I
Sbjct: 135 LVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 101/167 (60%), Gaps = 3/167 (1%)
Query: 10 YDYSFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDT 68
YDY FK++LIGDSGVGK + + TIGV+F + + V GK +K IWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 69 AGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128
AG ER+ +TS+YYRGA G +LVYD+ + T+ N+ W KE+ ++ + + V LVGNK
Sbjct: 62 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSNIVIXLVGNK 119
Query: 129 VDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
D RAV +E A+++ F+E SA ++ +V+ F+ +L +I
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 99/169 (58%), Gaps = 5/169 (2%)
Query: 10 YDYSFKILLIGDSGVGKXXXXXXXXXXXV-HDPSPTIGVDFKIKLLTVGGKRLKLTIWDT 68
Y++ FK++LIG+SGVGK HD TIGV+F + + +G +K IWDT
Sbjct: 7 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 66
Query: 69 AGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYS-TNQDCVKILVGN 127
AG ER+ +TS+YYRGA G +LV+D+T+ +T+ + W K ELY V +LVGN
Sbjct: 67 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVER-WLK--ELYDHAEATIVVMLVGN 123
Query: 128 KVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKIL 176
K D R V EE + A+ + LFLE SA ++ +V+ F+ +L +I
Sbjct: 124 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 4/171 (2%)
Query: 10 YDYSFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTV-GGKRLKLTIWD 67
YDY FKI+LIGDSGVGK + + TIGV+F K + + K +K IWD
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 68 TAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGN 127
TAGQER+ +TS+YYRGA G +LVYD+T++ +F N+ W KE+ + + + V +LVGN
Sbjct: 64 TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEK-WLKELR-DNADSNIVILLVGN 121
Query: 128 KVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEV 178
K D R + + A++ K F+E SA +V+ F LL +I V
Sbjct: 122 KSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNV 172
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 3/116 (2%)
Query: 16 ILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF 74
+LLIGDSGVGK + TIGVDFKI+ + + GK +KL IWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 75 GTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD 130
T+TSSYYRGAHGII+VYDVT +E+F N+ W +E++ Y++ ++ K+LVGNK D
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCD 114
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXX-XVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
S K++L+G++ VGK + PTIG F + +T+ +K IWDTAGQ
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
ERF +L YYR A ++VYDVT+ ++F + W KE+ ++D + LVGNK+D
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELH-EQASKDIIIALVGNKIDX 120
Query: 131 --RDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168
ER V REEG LA+E LF E SAK E+V F
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 98/177 (55%), Gaps = 3/177 (1%)
Query: 2 GSKVGNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKR 60
GS V S YSFK++L+G+ VGK +D T+ F K L +GGKR
Sbjct: 9 GSLVPRGSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKR 68
Query: 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDC 120
+ L IWDTAGQERF L YYR ++G ILVYD+T ++F + + W KE+ N+ C
Sbjct: 69 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEIC 127
Query: 121 VKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
+ I VGNK+D + ER V+ +E A+ SAK + +++ F DL +++E
Sbjct: 128 LCI-VGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 96/170 (56%), Gaps = 3/170 (1%)
Query: 9 SYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWD 67
S YSFK++L+G+ VGK +D T+G F K L +GGKR+ L IWD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61
Query: 68 TAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGN 127
TAGQERF L YYR ++G ILVYD+T ++F + + W KE+ N+ C+ I VGN
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICLCI-VGN 119
Query: 128 KVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
K+D + ER V+ +E A+ SAK + +++ F DL +++E
Sbjct: 120 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 94/179 (52%), Gaps = 6/179 (3%)
Query: 2 GSKVGNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKR 60
GS V S FKI++IGDS VGK D + TIGVDF+ + + + G+R
Sbjct: 9 GSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGER 68
Query: 61 LKLTIWDTAGQERF-GTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQD 119
+K+ +WDTAGQERF ++ YYR H ++ VYD+T +F +L + W +E + + D
Sbjct: 69 IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPA-WIEECKQHLLAND 127
Query: 120 CVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTED---VKQCFKDLLYKI 175
+ILVGNK D S V + A H E SAKN D V+ F L +K+
Sbjct: 128 IPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 95/170 (55%), Gaps = 3/170 (1%)
Query: 9 SYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWD 67
S YSFK++L+G+ VGK +D T+ F K L +GGKR+ L IWD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWD 61
Query: 68 TAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGN 127
TAGQERF L YYR ++G ILVYD+T ++F + + W KE+ N+ C+ I VGN
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICLCI-VGN 119
Query: 128 KVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
K+D + ER V+ +E A+ SAK + +++ F DL +++E
Sbjct: 120 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 89/167 (53%), Gaps = 6/167 (3%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FKI++IGDS VGK D + TIGVDF+ + + + G+R+K+ +WDTAGQE
Sbjct: 30 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 73 RF-GTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
RF ++ YYR H ++ VYD T +F +L + W +E + + D +ILVGNK D
Sbjct: 90 RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPA-WIEECKQHLLANDIPRILVGNKCDL 148
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTED---VKQCFKDLLYKI 175
S V + A H E SAKN D V+ F L +K+
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++L+G+S VGK H+ TIG F + + + +K IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
R+ +L YYRGA I+VYD+T +TF + W KE++ ++ + V L GNK D
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQAS-PNIVIALAGNKADLA 121
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
S+RAV +E A ++ LF+E SAK +V + F + K+
Sbjct: 122 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 105/184 (57%), Gaps = 12/184 (6%)
Query: 5 VGNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLL--------- 54
+ + YDY K L +GDSGVGK + T+G+DF+ K +
Sbjct: 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62
Query: 55 TVG-GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVEL 113
VG G+R+ L +WDTAG ERF +LT++++R A G +L++D+T ++F N+ + W ++++
Sbjct: 63 AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQM 121
Query: 114 YSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLY 173
++ +++ +L GNK D + +RAV EE LA+++ + E SA N ++ + LL
Sbjct: 122 HAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181
Query: 174 KILE 177
I++
Sbjct: 182 LIMK 185
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++L+G+S VGK H+ TIG F + + + +K IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
R+ +L YYRGA I+VYD+T +ETF + W KE++ ++ V L GNK D
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQAS-PSIVIALAGNKADLA 126
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168
++R V EE A ++ LF+E SAK +V F
Sbjct: 127 NKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF 162
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++L+G+S VGK H+ TIG F + + + +K IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
R+ +L YYRGA I+VYD+T E+F + W KE++ ++ + V L GNK D
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 125
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
++RAV +E A ++ LF+E SAK + +V + F + K+
Sbjct: 126 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++L+G+S VGK H+ TIG F + + + +K IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
R+ +L YYRGA I+VYD+T E+F + W KE++ ++ + V L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
++RAV +E A ++ LF+E SAK + +V + F + K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++L+G+S VGK H+ TIG F + + + +K IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
R+ +L YYRGA I+VYD+T E+F + W KE++ ++ + V L GNK D
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 125
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
++RAV +E A ++ LF E SAK + +V + F + K+
Sbjct: 126 NKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 91/177 (51%), Gaps = 5/177 (2%)
Query: 3 SKVGNNSYDYSFKILLIGDSGVGKXXXXXXXXX-XXVHDPSPTIGVDFKIKLLTVGGKRL 61
+ GN S + K++L+GD G GK V TIG F + L V +
Sbjct: 4 AAAGNKSINA--KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV 61
Query: 62 KLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCV 121
K IWDTAGQER+ +L YYRGA I+V+DVT + +F + W +E++ N + V
Sbjct: 62 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQAQG-NPNMV 119
Query: 122 KILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEV 178
L GNK D R VT E+ AQE+ F+E SAK +VK+ F ++ ++ V
Sbjct: 120 MALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++L+G+S VGK H+ TIG F + + + +K IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
R+ +L YYRGA I+VYD+T E+F + W KE++ ++ + V L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
++RAV +E A ++ LF+E SAK + +V + F + K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++L+G+S VGK H+ TIG F + + + +K IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
R+ +L YYRGA I+VYD+T E+F + W KE++ ++ + V L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
++RAV +E A ++ LF+E SAK + +V + F + K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++L+G+S VGK H+ TIG F + + + +K IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
R+ +L YYRGA I+VYD+T E+F + W KE++ ++ + V L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
++RAV +E A ++ LF+E SAK + +V + F + K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++L+G+S VGK H+ TI F + + + +K IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
R+ +L YYRGA I+VYD+T +TF + W KE++ ++ + V L GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQAS-PNIVIALAGNKADLA 123
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
S+RAV +E A ++ LF+E SAK +V + F + K+
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++L+G+S VGK H+ TIG F + + + +K IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
R+ +L YYRGA I+VYD+T E+F + W KE++ ++ + V L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
++RAV +E A ++ LF+E SAK + +V + F + K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++L+G+S VGK H+ TIG F + + + +K IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
R+ +L YYRGA I+VYD+T +TF + W KE++ ++ + V L GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQAS-PNIVIALAGNKADLA 123
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
S+RAV +E A ++ LF+E SAK +V + F + K+
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++L+G+S VGK H+ TIG F + + + +K IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
R+ +L YYRGA I+VYD+T E+F + W KE++ ++ + V L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
++RAV +E A ++ LF+E SAK + +V + F + K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 89/157 (56%), Gaps = 3/157 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXV-HDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
+K++ +G+ VGK ++ TIG+DF K L + ++L +WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
RF +L SY R + I+VYD+T R++F N ++ W +++ L +D + LVGNK D
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFEN-TTKWIQDI-LNERGKDVIIALVGNKTDLG 119
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169
R VT EEG AQE+ F E SAK ++K FK
Sbjct: 120 DLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFK 156
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++L+G+S VGK H+ TIG F + + + +K IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
R+ +L YYRGA I+VYD+T E+F + W KE++ ++ + V L GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 123
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
++RAV +E A ++ LF+E SAK + +V + F + K+
Sbjct: 124 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXV-HDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
K+ L+GD+GVGK H+ SPTIG F K + G + K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
RF +L YYRG+ ++VYD+T++++F L W KE++ + ++ V + GNK D
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-WVKELKEHGP-ENIVMAIAGNKCDLS 141
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
R V ++ A+ + +E SAKN ++++ F+ + +I
Sbjct: 142 DIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 90/165 (54%), Gaps = 3/165 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++ +G+ VGK + TIG+DF K + + + ++L +WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
RF +L SY R + ++VYD+T +F +S W +V D + +LVGNK D
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQ-TSKWIDDVRT-ERGSDVIIMLVGNKTDLA 120
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
+R +T EEG A+E +F+E SAK +VKQ F+ + +LE
Sbjct: 121 DKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 98/174 (56%), Gaps = 7/174 (4%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++L+GD GVGK + TIGV+F + L V G+ + L IWDTAGQER
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQER 68
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVGNKVD 130
F +L + +YRGA +L + V R++F NL + W KE Y+ +D +++GNKVD
Sbjct: 69 FKSLRTPFYRGADCCLLTFSVDDRQSFENLGN-WQKEFIYYADVKDPEHFPFVVLGNKVD 127
Query: 131 RDSERAVTREEGMILAQEH-KCLFLECSAKNTEDVKQCFKDLLYKILEVPSLLE 183
++ +R VT EE E+ +LE SAK+ +V F++ + ++L V LE
Sbjct: 128 KE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLE 180
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
K+ L+GD+GVGK DP+ PTIG F K + + K IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSF-DPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQ 64
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
ERF L YYRG+ I+VYD+T+ ETF+ L + W +E+ + V I GNK D
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGPPSIVVAI-AGNKCDL 122
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
R V + A +F+E SAKN ++ + F ++ +I
Sbjct: 123 TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 101/185 (54%), Gaps = 16/185 (8%)
Query: 6 GNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGK----- 59
G+ YDY K+L +GDSGVGK + T+G+DF+ K + +
Sbjct: 18 GSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGS 77
Query: 60 -----RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVE-- 112
++ L +WDTAGQERF +LT++++R A G +L++D+T +++F N+ + W +++
Sbjct: 78 SGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQAN 136
Query: 113 LYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172
Y N D V L+GNK D +R V + LA ++ + E SA ++V++ + LL
Sbjct: 137 AYCENPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 194
Query: 173 YKILE 177
I++
Sbjct: 195 DLIMK 199
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 9/159 (5%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
++KI+L GD+ VGK + S T+GVDF++K L V G+R L +WDTAGQ
Sbjct: 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
ERF ++ SY+R A G++L+YDVT ++F N+ W +E + ++ +LVGNK D
Sbjct: 88 ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIE-DAAHETVPIMLVGNKADI 145
Query: 131 RDS-----ERAVTREEGMILAQEHKCLFLECSAKNTEDV 164
RD+ ++ V G LA + LF E SAK+ ++
Sbjct: 146 RDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++ +G+ VGK + TIG+DF K + + + ++L +WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
RF +L SY R + ++VYD+T +F + +S W +V D + +LVGNK D
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSF-HQTSKWIDDVRT-ERGSDVIIMLVGNKTDLS 132
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169
+R V+ EEG A+E +F+E SAK +VKQ F+
Sbjct: 133 DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 169
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++ +G+ VGK + TIG+DF K + + + ++L +WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
RF +L SY R + ++VYD+T +F ++ W +V D + +LVGNK D
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQ-TTKWIDDVRT-ERGSDVIIMLVGNKTDLA 124
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169
+R V+ EEG A+E +F+E SAK +VKQ F+
Sbjct: 125 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 161
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
K+ L+GD+GVGK DP+ PTIG F K + + K IWDTAG
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSF-DPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 65
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
ERF L YYRG+ I+VYD+T+ ETF+ L + W +E+ + V I GNK D
Sbjct: 66 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGPPSIVVAI-AGNKCDL 123
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
R V + A +F+E SAKN ++ + F ++ +I
Sbjct: 124 TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 3/197 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++ +G+ VGK + TIG+DF K + + + ++L +WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
RF +L SY R + ++VYD+T +F ++ W +V D + +LVGNK D
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQ-TTKWIDDVRT-ERGSDVIIMLVGNKTDLA 131
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSLLEQGSAVVKNQ 192
+R V+ EEG A+E +F+E SAK +VKQ F+ + + + S ++ + +
Sbjct: 132 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDI 191
Query: 193 ILKQKEVQESARGGNCC 209
L++ + Q + GG C
Sbjct: 192 KLEKPQEQPVSEGGCSC 208
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++ +G+ VGK + TIG+DF K + + + ++L +WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
RF +L SY R + ++VYD+T +F ++ W +V D + +LVGNK D
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQ-TTKWIDDVRT-ERGSDVIIMLVGNKTDLA 119
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169
+R V+ EEG A+E +F+E SAK +VKQ F+
Sbjct: 120 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 156
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 18/185 (9%)
Query: 7 NNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLT--------V 56
+ YDY K+L +GDSGVGK + P T+G+DF+ K +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYDTQGADGA 63
Query: 57 GGKRLK--LTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVE-- 112
GK K L +WDTAG ERF +LT++++R A G +L++D+T +++F N+ + W +++
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQAN 122
Query: 113 LYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172
Y N D V L+GNK D +R V + LA+++ + E SA ++V++ + LL
Sbjct: 123 AYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
Query: 173 YKILE 177
I++
Sbjct: 181 DLIMK 185
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 18/185 (9%)
Query: 7 NNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLT--------V 56
+ YDY K+L +GDSGVGK + P T+G+DF+ K +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYDTQGADGA 63
Query: 57 GGKRLK--LTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVE-- 112
GK K L +WDTAG ERF +LT++++R A G +L++D+T +++F N+ + W +++
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQAN 122
Query: 113 LYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172
Y N D V L+GNK D +R V + LA+++ + E SA ++V++ + LL
Sbjct: 123 AYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
Query: 173 YKILE 177
I++
Sbjct: 181 DLIMK 185
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 97/180 (53%), Gaps = 18/180 (10%)
Query: 7 NNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLT--------V 56
+ YDY K+L +GDSGVGK + P T+G+DF+ K +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYDTQGADGA 63
Query: 57 GGKRLK--LTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVE-- 112
GK K L +WDTAG ERF +LT++++R A G +L +D+T +++F N+ + W +++
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQAN 122
Query: 113 LYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172
Y N D V L+GNK D +R V + LA+++ + E SA ++V++ + LL
Sbjct: 123 AYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 97/180 (53%), Gaps = 18/180 (10%)
Query: 7 NNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS--PTIGVDFKIKLLT--------V 56
+ YDY K+L +GDSGVGK + P T+G+DF+ K +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYDTQGADGA 63
Query: 57 GGKRLK--LTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVE-- 112
GK K L +WDTAG ERF +LT++++R A G +L +D+T +++F N+ + W +++
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQAN 122
Query: 113 LYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172
Y N D V L+GNK D +R V + LA+++ + E SA ++V++ + LL
Sbjct: 123 AYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 5/174 (2%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
K++++GDSGVGK + TIG DF K + V + + + IWDTAGQE
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVGNKV 129
RF +L ++YRGA +LV+DVT TF L S W E + ++ +D +++GNK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSLLE 183
D ++ + T+ ++ + E SAK +V+Q F+ + L+ + +E
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 5/174 (2%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
K++++GDSGVGK + TIG DF K + V + + + IWDTAGQE
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVGNKV 129
RF +L ++YRGA +LV+DVT TF L S W E + ++ +D +++GNK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSLLE 183
D ++ + T+ ++ + E SAK +V+Q F+ + L+ + +E
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 92/173 (53%), Gaps = 5/173 (2%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GDSGVGK + TIG DF K + V + + + IWDTAGQER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVGNKVD 130
F +L ++YRGA +LV+DVT TF L S W E + ++ +D +++GNK+D
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 131 RDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSLLE 183
++ + T+ ++ + E SAK +V+Q F+ + L+ + +E
Sbjct: 129 FENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++ +G+ VGK + TIG+DF K + + + ++L +WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
RF +L SY R + ++VYD+T +F ++ W +V D + +LVGNK D
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQ-TTKWIDDVRT-ERGSDVIIMLVGNKTDLA 124
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169
+R V+ EEG A+E +F+E SAK +VKQ F+
Sbjct: 125 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 161
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 3/194 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++ +G+ VGK + TIG+DF K + + + ++L +WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
RF +L SY R + ++VYD+T +F ++ W +V D + +LVGNK D
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQ-TTKWIDDVRT-ERGSDVIIMLVGNKTDLA 134
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSLLEQGSAVVKNQ 192
+R V+ EEG A+E +F+E SAK +VKQ F+ + + + S ++ + +
Sbjct: 135 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDI 194
Query: 193 ILKQKEVQESARGG 206
L++ + Q + GG
Sbjct: 195 KLEKPQEQPVSEGG 208
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++L+GD GVGK TIGV+F K L V G + + IWDTAGQE
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVGNKV 129
RF +L + +YRG+ +L + V ++F NLS+ W KE Y+ ++ +++GNK+
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKI 126
Query: 130 DRDSERAVTREEGMILAQEH-KCLFLECSAKNTEDVKQCFKDLLYKIL 176
D SER V+ EE +++ + E SAK+ +V F++ + ++L
Sbjct: 127 DI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 2 GSKVGNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKR 60
G+ G +S FK++L+GD GVGK TIGV+F K L V G
Sbjct: 1 GAMAGKSSL---FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHF 57
Query: 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDC 120
+ + IWDTAGQERF +L + +YRG+ +L + V ++F NLS+ W KE Y+ ++
Sbjct: 58 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEP 116
Query: 121 VK---ILVGNKVDRDSERAVTREEGMILAQEH-KCLFLECSAKNTEDVKQCFKDLLYKIL 176
+++GNK+D SER V+ EE +++ + E SAK+ +V F++ + ++L
Sbjct: 117 ESFPFVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 7/168 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FKI+L+GD GVGK TIGV+F K L V G + + IWDTAGQE
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVGNKV 129
RF +L + +YRG+ +L + V ++F NLS+ W KE Y+ ++ +++GNK
Sbjct: 72 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKT 130
Query: 130 DRDSERAVTREEGMILAQEH-KCLFLECSAKNTEDVKQCFKDLLYKIL 176
D ER V+ EE +++ + E SAK++ +V F++ + +IL
Sbjct: 131 DI-KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 5/168 (2%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
K++++GDSGVGK + TIG DF K + V + + + IWDTAG E
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVGNKV 129
RF +L ++YRGA +LV+DVT TF L S W E + ++ +D +++GNK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
D ++ + T+ ++ + E SAK +V+Q F+ + L+
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Query: 13 SFKILLIGDSGVGKXXXXXXX-XXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K++++G+ VGK D TIGVDF + + V + ++L +WDTAGQ
Sbjct: 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
E F +T +YYRGA +LV+ T RE+F +SS W ++V + D LV NK+D
Sbjct: 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKV--VAEVGDIPTALVQNKIDL 121
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
+ + EE LA+ K F S K +V + FK L K L+
Sbjct: 122 LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 10/172 (5%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLK-LTIWDTAGQ 71
K++++GDSGVGK TIG DF K +TV G ++ + +WDTAGQ
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYS---TNQDCVKILVGNK 128
ERF +L ++YRGA +LVYDVT +F N+ S W E +++ + + +++GNK
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNK 127
Query: 129 VD-RDSERAVTREEGMILAQE--HKCLFLECSAKNTEDVKQCFKDLLYKILE 177
+D +S++ V+ + LA+ LFL SAKN +V F+++ L+
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSALQ 178
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 14 FKILLIGDSGVGKXXXXXXXXX-XXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
+K++++G GVGK V PTI ++ K + V ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
+F + Y + G LVY +T + TF +L + + + + T+ D ILVGNK D +
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCDLE 121
Query: 133 SERAVTREEGMILAQE-HKCLFLECSAKNTEDVKQCFKDLLYKI 175
ER V +E+G LA++ + C FLE SAK+ +V + F DL+ +I
Sbjct: 122 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 14 FKILLIGDSGVGKXXXXXXXXX-XXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
+K++++G GVGK V PTI ++ K + V ++ L I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
+F + Y + G LVY +T + TF +L + + + + T+ D ILVGNK D +
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCDLE 123
Query: 133 SERAVTREEGMILAQE-HKCLFLECSAKNTEDVKQCFKDLLYKI 175
ER V +E+G LA++ + C FLE SAK+ +V + F DL+ +I
Sbjct: 124 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 14 FKILLIGDSGVGKXXXXXXXXX-XXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
+K++++G GVGK V + PTI ++ K + V ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
+F + Y + G LVY +T + TF +L + + + + T +D ILVGNK D +
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 121
Query: 133 SERAVTREEGMILAQEH-KCLFLECSAKNTEDVKQCFKDLLYKI 175
ER V +E+G LA++ C FLE SAK+ +V + F DL+ +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 4/164 (2%)
Query: 14 FKILLIGDSGVGKXXXXXXXXX-XXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
+K++++G GVGK V PTI ++ K + V ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
+F + Y + G LVY +T + TF +L + + + + T +D ILVGNK D +
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 121
Query: 133 SERAVTREEGMILAQEH-KCLFLECSAKNTEDVKQCFKDLLYKI 175
ER V +E+G LA++ C FLE SAK+ +V + F DL+ +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 76/148 (51%), Gaps = 7/148 (4%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V D PTI D K+ +V G +L I DTAGQE FG + Y R HG +LV+ + R
Sbjct: 35 VSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDR 93
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F + ++ + + + + D +LVGNK D +S+R V R E H + E S
Sbjct: 94 QSFNEVGKLFTQILRVKDRD-DFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEAS 152
Query: 158 AKNTEDVKQCFKDLL-----YKILEVPS 180
AK +V + F+ L+ Y+ E+P
Sbjct: 153 AKLRLNVDEAFEQLVRAVRKYQEQELPP 180
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V D PTI D K + + +L I DTAGQE FG + Y R G +LV+ VT R
Sbjct: 31 VTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDR 89
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
+F + + +++ + IL+GNK D D +R VT+EEG LA++ K ++E S
Sbjct: 90 GSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEAS 148
Query: 158 AKNTEDVKQCFKDLL 172
AK +V Q F +L+
Sbjct: 149 AKIRMNVDQAFHELV 163
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXX-VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++G GVGK V D PT ++ K++ + G+ +++ I DTAG E
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 67
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133
+ + +Y+R G +LV+ +T E+FT + + + + + ++VGNK D +
Sbjct: 68 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 134 ERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
R V EE A+E ++E SAK +V + F DL+ +I
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXX-VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++G GVGK V D PT ++ K++ + G+ +++ I DTAG E
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 63
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133
+ + +Y+R G +LV+ +T E+FT + + + + + ++VGNK D +
Sbjct: 64 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 134 ERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
R V EE A+E ++E SAK +V + F DL+ +I
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 15 KILLIGDSGVGKXXXX-XXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++G GVGK V D PT ++ K++ + G+ +++ I DTAGQE
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 78
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133
+ + +Y+R G + V+ +T E+F + + +++ +++ +LVGNK D +
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLED 137
Query: 134 ERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
+R V+ EE A++ ++E SAK +V + F DL+ +I
Sbjct: 138 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 15 KILLIGDSGVGKXXXX-XXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++G GVGK V D PT ++ K++ + G+ +++ I DTAGQE
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 66
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133
+ + +Y+R G + V+ +T E+F + + +++ +++ +LVGNK D +
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLED 125
Query: 134 ERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
+R V+ EE A++ ++E SAK +V + F DL+ +I
Sbjct: 126 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
S KI ++G VGK D + PTI F KL+TV G+ L + DTAGQ
Sbjct: 4 SRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQ 62
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
+ + +Y +G ILVY VT ++F + + K +++ Q + +LVGNK D
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDL 121
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172
ER ++ EEG LA+ FLE SAK + F+ ++
Sbjct: 122 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 162
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 5/174 (2%)
Query: 9 SYDYSFKILLIGDSGVGKXXXXXXXXXXXV-HDPSPTIGVDFKIKLLTVGGK-RLKLTIW 66
S+ KI+++GD GK TIG+DF ++ +T+ G + L IW
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 67 DTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVW--AKEVELYSTNQDCVKIL 124
D GQ G + Y GA G++LVYD+T ++F NL + K+V S Q V L
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVA-L 120
Query: 125 VGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEV 178
VGNK+D + R + E+ + QE+ SAK + V CF+ + +IL +
Sbjct: 121 VGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 15 KILLIGDSGVGKXXXXXXXX-XXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++G GVGK V D PT ++ K++ + G+ +++ I DTAGQE
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 74
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133
+ + +Y+R G + V+ +T E+F ++ + +++ +++ +LVGNK D +
Sbjct: 75 YAAIRDNYFRSGEGFLCVFSITEMESFA-ATADFREQILRVKEDENVPFLLVGNKSDLED 133
Query: 134 ERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
+R V+ EE A++ ++E SAK +V + F DL+ +I
Sbjct: 134 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 6/170 (3%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
FK++L+GD G GK PT+GV+ + +K +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
E+FG L YY A I+++DVT R T+ N+ + W + +L ++ +L GNKVD
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDI 126
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181
+ + + ++ ++ + + SAK+ + ++ F L K++ P+L
Sbjct: 127 KDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 4/172 (2%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIG-VDFKIKLLTVGGKRLKLTIWDTAG 70
++KI LIGD GVGK + + T+G V+ + L G +K +WDTAG
Sbjct: 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 71 QERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD 130
QE+ L YY GA G IL +DVT R T NL+ W KE + N+ + ++ NK+D
Sbjct: 71 QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPI-VVCANKID 128
Query: 131 RDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSLL 182
+ + ++++ M + + + E SAK + F L P L+
Sbjct: 129 IKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLI 180
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
S KI ++G VGK D PTI F KL+TV G+ L + DTAGQ
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQ 64
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
+ + +Y +G ILVY VT ++F + + K +++ Q + +LVGNK D
Sbjct: 65 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDL 123
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172
ER ++ EEG LA+ FLE SAK + F+ ++
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
S KI ++G VGK D PTI F KL+TV G+ L + DTAGQ
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQ 64
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
+ + +Y +G ILVY VT ++F + + K +++ Q + +LVGNK D
Sbjct: 65 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDL 123
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172
ER ++ EEG LA+ FLE SAK + F+ ++
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
S KI ++G VGK D PTI F KL+TV G+ L + DTAGQ
Sbjct: 1 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQ 59
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
+ + +Y +G ILVY VT ++F + + K +++ Q + +LVGNK D
Sbjct: 60 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDL 118
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172
ER ++ EEG LA+ FLE SAK + F+ ++
Sbjct: 119 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 159
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 6/170 (3%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
FK++L+GD G GK PT+GV+ + +K +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
E+FG L YY A I+++DVT R T+ N+ + W + +L ++ +L GNKVD
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDI 126
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181
+ + + ++ ++ + + SAK+ + ++ F L K++ P+L
Sbjct: 127 KDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 15 KILLIGDSGVGKXXXX-XXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++G GVGK V D PT ++ K++ + G+ +++ I DTAGQE
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 64
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133
+ + +Y+R G + V+ +T E+F + + +++ +++ +LVGNK D +
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLED 123
Query: 134 ERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
+R V+ EE A + ++E SAK +V + F DL+ +I
Sbjct: 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXX-VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++G GVGK V D PT ++ K++ + G+ +++ I DTAG E
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 66
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133
+ + +Y+R G + V+ +T E+F + + +++ +++ +LVGNK D +
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLED 125
Query: 134 ERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
+R V+ EE A++ ++E SAK +V + F DL+ +I
Sbjct: 126 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 6/170 (3%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
FK++L+GD G GK T+GV+ + +K +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
E+FG L YY A I+++DVT R T+ N+ + W + +L ++ +L GNKVD
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDI 126
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181
+ + + ++ ++ + + SAK+ + ++ F L K++ P+L
Sbjct: 127 KDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Query: 43 PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTN 102
PT+ + K++T+G L + DTAGQ+ + L S+ G HG +LVY VT +F
Sbjct: 55 PTVENTYS-KIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQV 113
Query: 103 LSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTE 162
+ S++ K E + + V +LVGNK D ER V EG LA+ F+E SA+ +
Sbjct: 114 IESLYQKLHEGHGKTRVPV-VLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQ 172
Query: 163 DVKQCFKDLLYKILEV 178
+ F ++ +I V
Sbjct: 173 LTQGIFTKVIQEIARV 188
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 6/170 (3%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
FK++L+GD G GK T+GV+ + +K +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
E+FG L YY A I+++DVT R T+ N+ + W + +L ++ +L GNKVD
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDI 126
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181
+ + + ++ ++ + + SAK+ + ++ F L K++ P+L
Sbjct: 127 KDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 6/169 (3%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++L+GD G GK T+GV+ + +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
+FG L YY A I+++DVT R T+ N+ + W + +L ++ +L GNKVD
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDIK 132
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181
+ + + ++ ++ + + SAK+ + ++ F L K++ P+L
Sbjct: 133 DRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 6/170 (3%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
FK++L+GD G GK T+GV+ + +K +WDTAGQ
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
E+FG L YY A I+++DVT R T+ N+ + W + +L ++ +L GNKVD
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDI 119
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181
+ + + ++ ++ + + SAK+ + ++ F L K++ P+L
Sbjct: 120 KDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 6/170 (3%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
FK++L+GD G GK T+GV+ + +K +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
E+FG L YY A I+++DVT R T+ N+ + W + +L ++ +L GNKVD
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDI 126
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181
+ + + ++ ++ + + SAK+ + ++ F L K++ P+L
Sbjct: 127 KDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 6/170 (3%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
FK++L+GD G GK T+GV+ + +K +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
E+FG L YY A I+++DVT R T+ N+ + W + +L ++ +L GNKVD
Sbjct: 70 EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDI 126
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181
+ + + ++ ++ + + SAK+ + ++ F L K++ P+L
Sbjct: 127 KDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 6/169 (3%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
FK++L+GD G GK T+GV+ + +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
+FG L YY A I+++DVT R T+ N+ + W + +L ++ +L GNKVD
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDIK 132
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181
+ + + ++ ++ + + SAK+ + ++ F L K++ P+L
Sbjct: 133 DRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
FK++L+GD G GK T+GV+ + +K +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
E+FG L YY A I+ +DVT R T+ N+ + W + +L ++ +L GNKVD
Sbjct: 70 EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDI 126
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181
+ + + ++ ++ + + SAK+ + ++ F L K++ P+L
Sbjct: 127 KDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 2/160 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
+++ + G GVGK + PT+ ++ ++++ L I DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
+F + H ILVY +T R++ L ++ + E+ + +LVGNK D
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172
R V E LA+ KC F+E SAK +VK+ F++LL
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 23/175 (13%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
S K++L+GD G GK + +PT+ + + L V GK + L IWDTAGQ
Sbjct: 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL-QVKGKPVHLHIWDTAGQ 92
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG-- 126
+ + L +Y A ++L +DVT +F N+ + W EV N C K I+VG
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-----NHFCKKVPIIVVGCK 147
Query: 127 ----------NKVDRDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKD 170
NK+ R+ VT G +A+ + +LECSA+ ++V F++
Sbjct: 148 TDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 6/181 (3%)
Query: 2 GSKVGNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKR 60
GS FK++L+GD G GK T+GV+ +
Sbjct: 1 GSMAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 60
Query: 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDC 120
+K +WDTAG E+FG L YY A I+++DVT R T+ N+ + W + +L ++
Sbjct: 61 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENI 117
Query: 121 VKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPS 180
+L GNKVD + + + ++ ++ + + SAK+ + ++ F L K++ P+
Sbjct: 118 PIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 175
Query: 181 L 181
L
Sbjct: 176 L 176
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 6/170 (3%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
FK++L+GD G GK T+GV+ + +K +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
E++G L YY A I+++DVT R T+ N+ + W + +L ++ +L GNKVD
Sbjct: 70 EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDI 126
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181
+ + + ++ ++ + + SAK+ + ++ F L K++ P+L
Sbjct: 127 KDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 15/184 (8%)
Query: 6 GNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLT 64
G+ S K + +GD VGK D PT+ +F ++ V G + L
Sbjct: 1 GSMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLG 59
Query: 65 IWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKIL 124
+WDTAGQE + L YRGA IL + + + ++ N+S W E++ Y+ V L
Sbjct: 60 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV--L 117
Query: 125 VGNKVD-RDSERAVTREEGMIL-----AQEHKCL-----FLECSAKNTEDVKQCFKDLLY 173
VG K+D RD ++ G + +E K L ++ECS+K+ E+VK F +
Sbjct: 118 VGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177
Query: 174 KILE 177
+L+
Sbjct: 178 VVLQ 181
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 64/109 (58%), Gaps = 5/109 (4%)
Query: 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQD 119
+K IWDTAGQER+ ++ YYRGA I+V+D++ T + + W ++++ S +
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTL-DRAKTWVNQLKISS---N 147
Query: 120 CVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168
+ ILV NK+D++ + V E AQ++ LF++ SAK ++K F
Sbjct: 148 YIIILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIF 195
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 63 LTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK 122
L I DT G +F + H ILV+ VT +++ L ++ V++ + +D
Sbjct: 58 LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 117
Query: 123 ILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172
+LVGNK D +++R V E +AQE KC F+E SAK +VK+ F++LL
Sbjct: 118 MLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELL 166
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
FK++L+GD G GK T+GV+ + +K +WDTAG
Sbjct: 6 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
E+FG L YY A I+++DVT R T+ N+ + W + +L ++ +L GNKVD
Sbjct: 66 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDI 122
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181
+ + + ++ ++ + + SAK+ + ++ F L K++ P+L
Sbjct: 123 KDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 170
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
FK++L+GD G GK T+GV+ + +K +WDTAG
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
E+FG L YY A I+++DVT R T+ N+ + W + +L ++ +L GNKVD
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDI 126
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181
+ + + ++ ++ + + SAK+ + ++ F L K++ P+L
Sbjct: 127 KDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 15/175 (8%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K + +GD VGK D PT+ +F ++ V G + L +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQED 66
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L YRGA IL + + + ++ N++ W E+ Y+ ILVG K+D RD
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI--ILVGTKLDLRD 124
Query: 133 SERAVTREEGMILAQEHK----------CLFLECSAKNTEDVKQCFKDLLYKILE 177
++ G + ++ +++ECS+K ++VK F + +L+
Sbjct: 125 DKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQ 179
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 13/176 (7%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
K + +GD VGK D PT+ +F + V G+ + L +WDTAGQE
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNLGLWDTAGQE 68
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-- 130
+ L YRGA +L + + + ++ N+ W E+ ++ N V LVG K+D
Sbjct: 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV--LVGTKLDLR 126
Query: 131 ------RDSERAVTREEGMILAQE-HKCLFLECSAKNTEDVKQCFKDLLYKILEVP 179
D +T +G L ++ ++ECS+K ++VK F + +L+ P
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 11/189 (5%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+FK++L+GD G GK TIGV+ +K +WDTAG
Sbjct: 12 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 71
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
E+FG L YY A I+++DVT R T+ N+ + W + +L ++ +L GNKVD
Sbjct: 72 EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDV 128
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSLLEQGSAVVKN 191
ER V + + + ++ + + SAK+ + ++ F L K+ P L V +
Sbjct: 129 -KERKV-KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL-----EFVAS 181
Query: 192 QILKQKEVQ 200
L EVQ
Sbjct: 182 PALAPPEVQ 190
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXX-VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
+K++++G GVGK V + PTI ++ K + + G+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
+ + Y R G + V+ + ++F ++ + ++++ ++D +LVGNK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP 122
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
S R V ++ LA+ + F+E SAK + V F L+ +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXX-VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
+K++++G GVGK V + PTI ++ K + + G+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
+ + Y R G + V+ + ++F ++ + ++++ ++D +LVGNK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
S R V ++ LA+ + F+E SAK + V F L+ +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+FK++L+GD G GK TIGV+ +K +WDTAG
Sbjct: 5 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 64
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
E+FG L YY A I+++DVT R T+ N+ + W + +L ++ +L GNKVD
Sbjct: 65 EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDV 121
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181
ER V + + + ++ + + SAK+ + ++ F L K+ P L
Sbjct: 122 -KERKV-KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 169
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+FK++L+GD G GK TIGV+ +K +WDTAG
Sbjct: 4 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 63
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
E+FG L YY A I+++DVT R T+ N+ + W + +L ++ +L GNKVD
Sbjct: 64 EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDV 120
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181
ER V + + + ++ + + SAK+ + ++ F L K+ P L
Sbjct: 121 -KERKV-KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 168
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
K +++GD VGK + PT+ + + + TVGGK+ L ++DTAGQE
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV-TVGGKQYLLGLYDTAGQE 77
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-R 131
+ L Y ++ + V +F N+ W E++ Y+ N +L+G ++D R
Sbjct: 78 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP--FLLIGTQIDLR 135
Query: 132 DSERAVTR-----------EEGMILAQE-HKCLFLECSAKNTEDVKQCFKDLLYKIL 176
D + + R E+G LA+E C ++ECSA + +K F + + IL
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ I + V GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD--- 130
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDLRQ 123
Query: 131 ---------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
+ + V EEG +A +LECSAK E V++ F+
Sbjct: 124 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ I + V GK+++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD--- 130
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPI--ILVGNKKDLRQ 143
Query: 131 ---------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
+ + V EEG +A +LECSAK E V++ F+
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ I + V GK+++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD--- 130
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDLRQ 143
Query: 131 ---------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
+ + V EEG +A +LECSAK E V++ F+
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 4/163 (2%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXX-VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
+K++++G GVGK V + PTI ++ K + + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
+ + Y R G + V+ + ++F ++ + ++++ + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
+ R V + LA+ + ++E SAK + V+ F L+ +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 4/163 (2%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXX-VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
+K++++G GVGK V + PTI ++ K + + G+ L I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
+ + Y R G + V+ + ++F ++ + ++++ + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
+ R V + LA+ + ++E SAK + V+ F L+ +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Query: 43 PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTN 102
PTI DF K + V L I DTAG E+F ++ Y + G ILVY + +++F +
Sbjct: 34 PTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQD 92
Query: 103 LSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTE 162
+ + + + + + V ILVGNKVD +SER V+ EG LA+E C F+E SAK+
Sbjct: 93 IKPMRDQIIRVKRYEKVPV-ILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKT 151
Query: 163 DVKQCFKDLL 172
V + F +++
Sbjct: 152 MVDELFAEIV 161
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 4/163 (2%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXX-VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
+K++++G GVGK V + PTI ++ K + + G+ L I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
+ + Y R G + V+ + ++F ++ + ++++ + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
+ R V + LA+ + ++E SAK + V+ F L+ +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V D PTI D +K + + L + DTAGQE F + Y R G ++VY VT +
Sbjct: 44 VDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK 102
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
+F ++ + + + + ILV NKVD R VTR++G +A ++ ++E S
Sbjct: 103 ASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETS 161
Query: 158 AKNTE-DVKQCFKDLL 172
AK+ +V + F DL+
Sbjct: 162 AKDPPLNVDKTFHDLV 177
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 4/163 (2%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXX-VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
+K++++G GVGK V + PTI ++ K + + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132
+ + Y R G + V+ + ++F ++ + ++++ + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
+ R V + LA+ + ++E SAK + V+ F L+ +I
Sbjct: 121 AGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ KI+++GD VGK + P+ PT+ +F ++ + L +WDTA
Sbjct: 23 ALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFS-HVMKYKNEEFILHLWDTA 79
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKV 129
GQE + L Y + ++L + V R +F N+S+ W E++ Y V LVG KV
Sbjct: 80 GQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV--LVGLKV 137
Query: 130 D--RDSERAVTREEGMILAQEHKCL-FLECSA 158
D +D VT++EG L Q+ C+ ++E S+
Sbjct: 138 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASS 169
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V D PTI D +K + + L + DTAGQE F + Y R G ++VY VT +
Sbjct: 39 VPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK 97
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
+F ++ + + + + ILV NKVD R VTR++G +A ++ ++E S
Sbjct: 98 ASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETS 156
Query: 158 AKNTE-DVKQCFKDLL 172
AK+ +V + F DL+
Sbjct: 157 AKDPPLNVDKTFHDLV 172
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ KI+++GD VGK + P+ PT+ +F ++ + L +WDTA
Sbjct: 22 ALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFS-HVMKYKNEEFILHLWDTA 78
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKV 129
GQE + L Y + ++L + V R +F N+S+ W E++ Y V LVG KV
Sbjct: 79 GQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV--LVGLKV 136
Query: 130 D--RDSERAVTREEGMILAQEHKCL-FLECSA 158
D +D VT++EG L Q+ C+ ++E S+
Sbjct: 137 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASS 168
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 5/159 (3%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXX-VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K+ + G +GVGK + + PT+ ++ + T+ + + + I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQED 88
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133
+ R G +LVYD+T R +F + + ++ ++ ILVGNK D D
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPL-KNILDEIKKPKNVTLILVGNKADLDH 146
Query: 134 ERAVTREEGMILAQEHKCLFLECSAKNTE-DVKQCFKDL 171
R V+ EEG LA E C F ECSA E ++ + F +L
Sbjct: 147 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 185
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 15/166 (9%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K + +GD VGK D PT+ +F ++ V G + L +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L YRGA +L + + + ++ N+ W E++ Y+ V LVG K+D RD
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIV--LVGTKLDLRD 124
Query: 133 SERAVTREEG---MILAQEHK-------CLFLECSAKNTEDVKQCF 168
++ + G + AQ + +LECS+K ++VK F
Sbjct: 125 DKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 43 PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTN 102
PTI D +K + + L + DTAGQE F + Y R G ++VY VT + +F +
Sbjct: 49 PTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEH 107
Query: 103 LSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTE 162
+ + + + + ILV NKVD R VTR++G +A ++ ++E SAK+
Sbjct: 108 VDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPP 166
Query: 163 -DVKQCFKDLL 172
+V + F DL+
Sbjct: 167 LNVDKTFHDLV 177
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D R+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDLRN 123
Query: 133 SER-----------AVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
E V EEG +A ++ECSAK + V++ F+
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D R+
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDLRN 121
Query: 133 SER-----------AVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
E V EEG +A ++ECSAK + V++ F+
Sbjct: 122 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D R+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDLRN 123
Query: 133 SER-----------AVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
E V EEG +A ++ECSAK + V++ F+
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D R+
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDLRN 121
Query: 133 SER-----------AVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
E V EEG +A ++ECSAK + V++ F+
Sbjct: 122 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D R+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDLRN 123
Query: 133 SER-----------AVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
E V EEG +A ++ECSAK + V++ F+
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D R+
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDLRN 124
Query: 133 SER-----------AVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
E V EEG +A ++ECSAK + V++ F+
Sbjct: 125 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D R+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDLRN 125
Query: 133 SER-----------AVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
E V EEG +A ++ECSAK + V++ F+
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D R+
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDLRN 127
Query: 133 SER-----------AVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
E V EEG +A ++ECSAK + V++ F+
Sbjct: 128 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 176
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D R+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDLRN 123
Query: 133 SER-----------AVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
E V EEG +A ++ECSAK + V++ F+
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D R+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDLRN 125
Query: 133 SER-----------AVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
E V EEG +A ++ECSAK + V++ F+
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D R+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDLRN 125
Query: 133 SER-----------AVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
E V EEG +A ++ECSAK + V++ F+
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D R+
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDLRN 126
Query: 133 SER-----------AVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
E V EEG +A ++ECSAK + V++ F+
Sbjct: 127 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D R+
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDLRN 124
Query: 133 SER-----------AVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
E V EEG +A ++ECSAK + V++ F+
Sbjct: 125 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 43 PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTN 102
PTI ++ K + + L + DTAGQE F + Y R G ++VY VT + +F +
Sbjct: 49 PTIEDSYR-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEH 107
Query: 103 LSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTE 162
+ + + + + ILV NKVD R VTR++G +A ++ ++E SAK+
Sbjct: 108 VDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPP 166
Query: 163 -DVKQCFKDLL 172
+V + F DL+
Sbjct: 167 LNVDKTFHDLV 177
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
++++L+GD GVGK D +G D + LTV G+ L + DT E+
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 74 FGTLTS--SYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQ-DCVKI-LVGNKV 129
S S +G ++VY + R +F + S + ++L T+Q D V I LVGNK
Sbjct: 65 LDKSWSQESCLQGGSAYVIVYSIADRGSFESASEL---RIQLRRTHQADHVPIILVGNKA 121
Query: 130 DRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169
D R V+ EEG A C F+E SA +V + F+
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 119
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKILEV 178
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 179 PSL 181
P +
Sbjct: 180 PPV 182
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 119
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKILEV 178
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 179 PSL 181
P +
Sbjct: 180 PPV 182
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD--- 130
+ L Y I++ + V ++ N+ W EV+ + N ILV NK D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPI--ILVANKKDLRS 143
Query: 131 ---------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
R + V ++G +A + +LECSAK E V++ F+
Sbjct: 144 DEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFE 192
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 15/167 (8%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF 74
K +L+GD VGK D +++V G+ ++L + DTAGQ+ F
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF 81
Query: 75 GTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVE---------LYSTNQDC---VK 122
L Y +L + V +F N+S W E+ L T D VK
Sbjct: 82 DKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVK 141
Query: 123 ILVGNKVDRDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCF 168
+L+ ++D+ E+ V E +LA+E K ++ECSA +++K+ F
Sbjct: 142 VLI--ELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 47 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNS 105
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ +++ ++++ + D +LVGNK D + R V ++ LA+ + F+E S
Sbjct: 106 KSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETS 163
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 164 AKTRQGVEDAFYTLVREI 181
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 88
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 146
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKIL 176
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 63
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 121
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKILEV 178
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181
Query: 179 PSL 181
P +
Sbjct: 182 PPV 184
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 30 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 88
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ ++D +LVGNK D S R V ++ LA+ + F+E S
Sbjct: 89 KSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETS 146
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V F L+ +I
Sbjct: 147 AKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 30 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 88
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ ++D +LVGNK D S R V ++ LA+ + F+E S
Sbjct: 89 KSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETS 146
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V F L+ +I
Sbjct: 147 AKTRQGVDDAFYTLVREI 164
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 119
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKILEV 178
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 179 PSL 181
P +
Sbjct: 180 PPV 182
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 7 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 65
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 66 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 123
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKILEV 178
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 124 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 183
Query: 179 PSL 181
P +
Sbjct: 184 PPV 186
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 90/198 (45%), Gaps = 27/198 (13%)
Query: 1 MGSKVGNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVG 57
MGS ++ + + K +++GD VGK PS PT+ ++ + ++ +G
Sbjct: 1 MGSSHHHHHHMQTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IG 57
Query: 58 GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTN 117
G+ L ++DTAGQE + L Y ++ + V +F N+ W E+
Sbjct: 58 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----T 112
Query: 118 QDCVK---ILVGNKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNT 161
C K +LVG ++D ++ ++ +T E LA++ K + ++ECSA
Sbjct: 113 HHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 172
Query: 162 EDVKQCFKDLLYKILEVP 179
+ +K F + + LE P
Sbjct: 173 KGLKNVFDEAILAALEPP 190
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 119
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKILEV 178
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 179 PSL 181
P +
Sbjct: 180 PPV 182
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 119
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKILE 177
RD + +T +G+ +A+E + +LECSA +K F + + +L+
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 88
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 146
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKIL 176
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 10 AIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 68
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 69 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 126
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKIL 176
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 127 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 119
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKIL 176
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 22 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 80
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 81 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 138
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKIL 176
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 139 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 119
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKIL 176
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 17/169 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++++GD GK + PT+ ++ + + V GK+++L +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y I++ + + ++ N+ W EV+ + N ILVGNK D R+
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDLRN 126
Query: 133 SER-----------AVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
E V EEG +A ++ECSAK + V++ F+
Sbjct: 127 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 13 AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 71
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 72 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 129
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKIL 176
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 130 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 21/171 (12%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
K++++GD GK P+ PT+ ++ + + V GK+++L +WDTAGQ
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQF--PAVYVPTVFENY-VADIEVDGKQVELALWDTAGQ 63
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
E + Y I++ + + ++ N+ W EV+ + N ILVGNK D
Sbjct: 64 EDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI--ILVGNKKDL 121
Query: 132 DSERAVTRE------------EGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
++ RE EG +A ++ECSAK + V++ F+
Sbjct: 122 RNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 20/183 (10%)
Query: 1 MGSKVGNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDP-SPTIGVDFKIKLLTVGGK 59
M +VGN+ K++++GD GK + PT+ ++ + + V G+
Sbjct: 1 MSQQVGNS---IRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGR 56
Query: 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQD 119
R++L +WDTAGQE + L Y ++ +++ + + ++ N+ W EV + Q
Sbjct: 57 RVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC--QG 114
Query: 120 CVKILVGNKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQ 166
ILVG KVD ++ ++ VT +EG +A + + ECSAK V++
Sbjct: 115 VPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVRE 174
Query: 167 CFK 169
F+
Sbjct: 175 VFE 177
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 27/190 (14%)
Query: 9 SYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTI 65
S+ + K +++GD VGK PS PT+ ++ + ++ +GG+ L +
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGL 57
Query: 66 WDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK--- 122
+DTAGQE + L Y ++ + V +F N+ W E+ C K
Sbjct: 58 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPF 112
Query: 123 ILVGNKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
+LVG ++D ++ ++ +T E LA++ K + ++ECSA + +K F
Sbjct: 113 LLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 172
Query: 170 DLLYKILEVP 179
+ + LE P
Sbjct: 173 EAILAALEPP 182
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAG E + + Y R G + V+ +
Sbjct: 47 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNT 105
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ ++D +LVGNK D S R V ++ LA+ + F+E S
Sbjct: 106 KSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETS 163
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V F L+ +I
Sbjct: 164 AKTRQGVDDAFYTLVREI 181
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 36 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 94
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 95 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 152
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 153 AKTRQGVEDAFYTLVREI 170
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 27/190 (14%)
Query: 9 SYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTI 65
S+ + K +++GD VGK PS PT+ ++ + ++ +GG+ L +
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGL 58
Query: 66 WDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK--- 122
+DTAGQE + L Y ++ + V +F N+ W E+ C K
Sbjct: 59 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPF 113
Query: 123 ILVGNKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
+LVG ++D ++ ++ +T E LA++ K + ++ECSA + +K F
Sbjct: 114 LLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 173
Query: 170 DLLYKILEVP 179
+ + LE P
Sbjct: 174 EAILAALEPP 183
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 27/190 (14%)
Query: 9 SYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTI 65
S+ + K +++GD VGK PS PT+ ++ + ++ +GG+ L +
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGL 58
Query: 66 WDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK--- 122
+DTAGQE + L Y ++ + V +F N+ W E+ C K
Sbjct: 59 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPF 113
Query: 123 ILVGNKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169
+LVG ++D ++ ++ +T E LA++ K + ++ECSA + +K F
Sbjct: 114 LLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 173
Query: 170 DLLYKILEVP 179
+ + LE P
Sbjct: 174 EAILAALEPP 183
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 119
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLL 172
RD + +T +G+ +A+E + +LECSA +K F + +
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 34 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 92
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 93 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 150
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 151 AKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 34 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 92
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 93 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 150
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 151 AKTRQGVEDAFYTLVREI 168
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 27/186 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + ++ +GG+ L ++DTA
Sbjct: 10 TIKCVVVGDGAVGKNCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 66
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 67 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 121
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 122 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 181
Query: 174 KILEVP 179
LE P
Sbjct: 182 AALEPP 187
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 27/186 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + ++ +GG+ L ++DTA
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 59
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 114
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 174 KILEVP 179
LE P
Sbjct: 175 AALEPP 180
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 27/186 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + ++ +GG+ L ++DTA
Sbjct: 10 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 66
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 67 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 121
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 122 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 181
Query: 174 KILEVP 179
LE P
Sbjct: 182 AALEPP 187
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAG
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 61
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 119
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKILEV 178
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 179 PSL 181
P +
Sbjct: 180 PPV 182
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 27/186 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + ++ +GG+ L ++DTA
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 59
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 114
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 174 KILEVP 179
LE P
Sbjct: 175 AALEPP 180
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAG
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 61
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 119
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKILEV 178
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 179 PSL 181
P +
Sbjct: 180 PPV 182
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 27/186 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + ++ +GG+ L ++DTA
Sbjct: 4 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 60
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 61 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 115
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 116 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 175
Query: 174 KILEVP 179
LE P
Sbjct: 176 AALEPP 181
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 27/186 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + ++ +GG+ L ++DTA
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 59
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 114
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 174 KILEVP 179
LE P
Sbjct: 175 AALEPP 180
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 29 VDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 29 VDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 27/186 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + ++ +GG+ L ++DTA
Sbjct: 3 TIKCVVVGDVAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 59
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 114
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 174 KILEVP 179
LE P
Sbjct: 175 AALEPP 180
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Query: 43 PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTN 102
PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 103 LSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTE 162
+ + ++++ + D +LVGNK D + R V + LA+ + ++E SAK +
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQ 150
Query: 163 DVKQCFKDLLYKI 175
V+ F L+ +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Query: 43 PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTN 102
PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 103 LSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTE 162
+ + ++++ + D +LVGNK D + R V + LA+ + ++E SAK +
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQ 150
Query: 163 DVKQCFKDLLYKI 175
V+ F L+ +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 4 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 62
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + + +LVG K+D
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDL 120
Query: 131 ----------RDSERA-VTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKIL 176
RD + A +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 121 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 4 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 62
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + + +LVG K+D
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDL 120
Query: 131 ----------RDSERA-VTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKIL 176
RD + A +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 121 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + + +LVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDL 119
Query: 131 ----------RDSERA-VTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKIL 176
RD + A +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 120 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + P+I ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 35 VDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 93
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 94 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 151
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 152 AKTRQGVEDAFYTLVREI 169
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGN+ D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLL 172
AK + V+ F L+
Sbjct: 146 AKTRQGVEDAFYTLV 160
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAG
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 88
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 146
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKIL 176
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAG
Sbjct: 6 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 64
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + +F N+ + W EV + N ILVG K+D
Sbjct: 65 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDL 122
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKIL 176
RD + +T +G+ +A+E + +LECSA +K F + + +L
Sbjct: 123 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 27/186 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + + +GG+ L ++DTA
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTV-XIGGEPYTLGLFDTA 59
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 114
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 174 KILEVP 179
LE P
Sbjct: 175 AALEPP 180
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + P+I ++ K + + G+ L I DTAGQE + + Y R G + V+ +
Sbjct: 29 VDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 27/184 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK + PS PT+ ++ + ++ +GG+ L ++DTA
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKL--PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 59
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 114
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 174 KILE 177
LE
Sbjct: 175 AALE 178
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DT GQE + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTA QE + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAG+E + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DT GQE + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTA QE + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAG E + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAGQE + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 27/184 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + ++ +GG+ L ++DTA
Sbjct: 7 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 63
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 64 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 118
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 119 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 178
Query: 174 KILE 177
LE
Sbjct: 179 AALE 182
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 27/184 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + ++ +GG+ L ++DTA
Sbjct: 5 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 61
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 62 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 116
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 117 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 176
Query: 174 KILE 177
LE
Sbjct: 177 AALE 180
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 27/184 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + ++ +GG+ L ++DTA
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 59
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 114
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 174 KILE 177
LE
Sbjct: 175 AALE 178
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 27/184 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + ++ +GG+ L ++DTA
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 59
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 114
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 174 KILE 177
LE
Sbjct: 175 AALE 178
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 27/184 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + ++ +GG+ L ++DTA
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 59
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 114
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA +K F + +
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAIL 174
Query: 174 KILE 177
LE
Sbjct: 175 AALE 178
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAG E + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAG E + + Y R G + V+ +
Sbjct: 34 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNT 92
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 93 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 150
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 151 AKTRQGVEDAFYTLVREI 168
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 27/186 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + ++ +GG+ L ++DTA
Sbjct: 7 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 63
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
G E + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 64 GLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 118
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 119 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 178
Query: 174 KILEVP 179
LE P
Sbjct: 179 AALEPP 184
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 27/186 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + ++ +GG+ L ++DTA
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 59
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
G E + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 60 GLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 114
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 174 KILEVP 179
LE P
Sbjct: 175 AALEPP 180
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAG E + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAG E + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAG E + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V K + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQ 61
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + ++ N+ + W EV + + ILVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI--ILVGTKLDL 119
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKIL 176
RD + +T +G+ LA+E + +LECSA +K F + + +L
Sbjct: 120 RDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 38 VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
V + PTI ++ K + + G+ L I DTAG E + + Y R G + V+ +
Sbjct: 29 VDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNT 87
Query: 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157
++F ++ + ++++ + D +LVGNK D + R V + LA+ + ++E S
Sbjct: 88 KSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETS 145
Query: 158 AKNTEDVKQCFKDLLYKI 175
AK + V+ F L+ +I
Sbjct: 146 AKTRQGVEDAFYTLVREI 163
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V K + L +WDTAGQ
Sbjct: 9 AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQ 67
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + ++ N+ + W EV + + ILVG K+D
Sbjct: 68 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI--ILVGTKLDL 125
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKIL 176
RD + +T +G+ LA+E + +LECSA +K F + + +L
Sbjct: 126 RDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 183
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V K + L +WDTAGQ
Sbjct: 10 AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQ 68
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD- 130
E + L Y ++ + + ++ N+ + W EV + + ILVG K+D
Sbjct: 69 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI--ILVGTKLDL 126
Query: 131 RDSE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKIL 176
RD + +T +G+ LA+E + +LECSA +K F + + +L
Sbjct: 127 RDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 17/179 (9%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K +++GD VGK + PT+ ++ ++ V GK + L +WDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y ++ + + +F ++ + W EV + N ILVG K+D RD
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI--ILVGTKLDLRD 273
Query: 133 SE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKILEVP 179
+ +T +G+ +A+E + +LECSA +K F + + +L P
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 332
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 27/184 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS P + ++ + ++ +GG+ L ++DTA
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPAVFDNYAVTVM-IGGEPYTLGLFDTA 59
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 114
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 174 KILE 177
LE
Sbjct: 175 AALE 178
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 17/179 (9%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K +++GD VGK + PT+ ++ ++ V GK + L +WDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y ++ + + +F ++ + W EV + N ILVG K+D RD
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI--ILVGTKLDLRD 273
Query: 133 SE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKILEVP 179
+ +T +G+ +A+E + +LECSA +K F + + +L P
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 332
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 17/179 (9%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K +++GD VGK + PT+ ++ ++ V GK + L +WDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD-RD 132
+ L Y ++ + + +F ++ + W EV + N ILVG K+D RD
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI--ILVGTKLDLRD 273
Query: 133 SE-----------RAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLYKILEVP 179
+ +T +G+ +A+E + +LECSA +K F + + +L P
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 332
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 27/184 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + ++ +GG+ L + DTA
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGLRDTA 59
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 114
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA + +K F + +
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 174 KILE 177
LE
Sbjct: 175 AALE 178
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPT----IGVDFKIKLLTVGGKR---LKLTIW 66
++++LIG+ GVGK VHD + +G D + L V G+ + L +W
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAG--VHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMW 64
Query: 67 DTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQ--DCVKIL 124
+ G+ + L + ++VY +T R +F S + ++L Q D IL
Sbjct: 65 ENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIIL 119
Query: 125 VGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
VGNK D R V+ EG A C F+E SA +VK+ F+ ++ ++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTA 69
+ K +++GD VGK PS PT+ ++ + ++ +GG+ L ++DTA
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTA 59
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK---ILVG 126
GQE + L Y ++ + V +F N+ W E+ C K +LVG
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVG 114
Query: 127 NKVD------------RDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFKDLLY 173
++D ++ ++ +T E LA++ K + ++ECSA +K F + +
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAIL 174
Query: 174 KIL 176
L
Sbjct: 175 AAL 177
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 84/202 (41%), Gaps = 36/202 (17%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71
+ K +++GD VGK + PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 63
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRR-------------------ETFTNLSSVWAKEVE 112
E + L Y G D+T R +F N+ + W EV
Sbjct: 64 EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 113 LYSTNQDCVKILVGNKVD-RDSE-----------RAVTREEGMILAQEHKCL-FLECSAK 159
+ N ILVG K+D RD + +T +G+ +A+E + +LECSA
Sbjct: 124 HHCPNTPI--ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 181
Query: 160 NTEDVKQCFKDLLYKILEVPSL 181
+K F + + +L P +
Sbjct: 182 TQRGLKTVFDEAIRAVLCPPPV 203
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 2 GSKVGNNSY-DYSFKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKR 60
SK+ +N + + +IL++G G GK V PTIG + + TV K
Sbjct: 5 ASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVE----TVQYKN 60
Query: 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQD- 119
+ T+WD GQ+R +L YYR G+I V D R A+EV N+D
Sbjct: 61 ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGE-----AREVMQRMLNEDE 115
Query: 120 ---CVKILVGNKVD 130
V ++ NK D
Sbjct: 116 LRNAVWLVFANKQD 129
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 1 MGSKVGNNSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPSPT----IGVDFKIKLLTV 56
+ S+ GN Y +++LIG+ GVGK VHD + +G D + L V
Sbjct: 29 ISSESGNTYY----RVVLIGEQGVGKSTLANIFAG--VHDSMDSDCEVLGEDTYERTLMV 82
Query: 57 GGKR---LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVEL 113
G+ + L +W+ G+ + L + ++VY +T R +F S + ++L
Sbjct: 83 DGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQL 137
Query: 114 YSTNQ--DCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDL 171
Q D ILVGNK D R V+ EG A C F+E SA +VK+ F+ +
Sbjct: 138 RRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197
Query: 172 LYKI 175
+ ++
Sbjct: 198 VRQV 201
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 19/177 (10%)
Query: 8 NSYDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPSPT----IGVDFKIKLLTVGGKR--- 60
N+Y ++++LIG+ GVGK VHD + +G D + L V G+
Sbjct: 4 NTY---YRVVLIGEQGVGKSTLANIFAG--VHDSMDSDCEVLGEDTYERTLMVDGESATI 58
Query: 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQ-- 118
+ L +W+ G+ + L + ++VY +T R +F S + ++L Q
Sbjct: 59 ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTE 113
Query: 119 DCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
D ILVGNK D R V+ EG A C F+E SA +VK+ F+ ++ ++
Sbjct: 114 DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 9/170 (5%)
Query: 11 DYSFKILLIGDSGVGKXXXXXX---XXXXXVHDP-SPTIGVDFKIKLLTVGGKRLKLTIW 66
D FK++L+G+SGVGK H+P +P D + + V + + L ++
Sbjct: 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPE---DTYERRIMVDKEEVTLVVY 77
Query: 67 DTAGQ-ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILV 125
D Q + G L + ++V+ VT R +F+ + + + + D ILV
Sbjct: 78 DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILV 136
Query: 126 GNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
GNK D R V+ EEG LA C +E SA + ++ F+ + +I
Sbjct: 137 GNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 14/135 (10%)
Query: 1 MGSKVGNNSY-DYSFKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGK 59
SK+ +N + + +IL++G G GK V PTIG + + TV K
Sbjct: 4 FASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVE----TVQYK 59
Query: 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQD 119
+ T+WD GQ+R +L YYR G+I V D R A+EV N+D
Sbjct: 60 NISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNED 114
Query: 120 CVK----ILVGNKVD 130
++ ++ NK D
Sbjct: 115 ELRNAAWLVFANKQD 129
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G G GK V PTIG + + TV K + T+WD GQ+R
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVE----TVQYKNISFTVWDVGGQDR 56
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK----ILVGNKV 129
+L YYR G+I V D R A+EV N+D ++ ++ NK
Sbjct: 57 IRSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQ 111
Query: 130 D 130
D
Sbjct: 112 D 112
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
KI+++GDS GK + PT+ ++ + +R++L++WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 67
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD--- 130
+ + Y + +++ +D++R ET ++ W E++ + N +LVG K D
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 125
Query: 131 ---------RDSERAVTREEGMILAQE-HKCLFLECSAKNTED 163
+ V+ ++G +A++ ++ECSA +E+
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
KI+++GDS GK + PT+ ++ + +R++L++WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 83
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD--- 130
+ + Y + +++ +D++R ET ++ W E++ + N +LVG K D
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 141
Query: 131 ---------RDSERAVTREEGMILAQE-HKCLFLECSAKNTED 163
+ V+ ++G +A++ ++ECSA +E+
Sbjct: 142 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
KI+++GDS GK + PT+ ++ + +R++L++WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 88
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD--- 130
+ + Y + +++ +D++R ET ++ W E++ + N +LVG K D
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 146
Query: 131 ---------RDSERAVTREEGMILAQE-HKCLFLECSAKNTED 163
+ V+ ++G +A++ ++ECSA +E+
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G GK + PTIG + + TV K + T+WD GQ+R
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNICFTVWDVGGQDR 73
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133
L Y++ G+I V D RE ++ K + L +D V +L NK D +
Sbjct: 74 IRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKML-LVDELRDAVLLLFANKQDLPN 132
Query: 134 ERAVT 138
A++
Sbjct: 133 AMAIS 137
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 6/164 (3%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+K+LL+G GVGK + G + + + V G+ L ++D Q+
Sbjct: 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDG 61
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQ--DCVKILVGNKVDR 131
L ++VY VT + +F S + V+L Q D ILVGNK D
Sbjct: 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSDL 118
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
R V+ +EG A C F+E SA +V+ F+ ++ +I
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 6/164 (3%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+K+LL+G GVGK + G + + + V G+ L ++D Q+
Sbjct: 8 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDG 66
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQ--DCVKILVGNKVDR 131
L ++VY VT + +F S + V+L Q D ILVGNK D
Sbjct: 67 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSDL 123
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
R V+ +EG A C F+E SA +V+ F+ ++ +I
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 16/171 (9%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPT----IGVDFKIKLLTVGGKR---LKLTIW 66
++++LIG+ GVGK VHD + +G D + L V G+ + L +W
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAG--VHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMW 64
Query: 67 DTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQ--DCVKIL 124
+ G+ + L + ++VY +T R +F S + ++L Q D IL
Sbjct: 65 ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIIL 119
Query: 125 VGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
VGNK D R V+ EG A F+E SA +VK+ F+ ++ ++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 6/164 (3%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+K+LL+G GVGK + G + + + V G+ L ++D Q+
Sbjct: 8 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDG 66
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQ--DCVKILVGNKVDR 131
L ++VY VT + +F S + V+L Q D ILVGNK D
Sbjct: 67 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSDL 123
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
R V+ +EG A C F+E SA +V+ F+ ++ +I
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 18/189 (9%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++L+GD GK + PT+ ++ L T +R++L++WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET-EEQRVELSLWDTSGSPY 87
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD--- 130
+ + Y + ++L +D++R ET + W E+ Y + +L+G K D
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRT 145
Query: 131 ---------RDSERAVTREEGMILAQEHKC-LFLECSAKNTE-DVKQCFKDLLYKILEVP 179
+ ++ E+G +A++ ++LE SA +E + F+ L P
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205
Query: 180 SLLEQGSAV 188
S L Q S V
Sbjct: 206 SPLPQKSPV 214
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 18/189 (9%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++L+GD GK + PT+ ++ L T +R++L++WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET-EEQRVELSLWDTSGSPY 70
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD--- 130
+ + Y + ++L +D++R ET + W E+ Y + +L+G K D
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRT 128
Query: 131 ---------RDSERAVTREEGMILAQEHKC-LFLECSAKNTE-DVKQCFKDLLYKILEVP 179
+ ++ E+G +A++ ++LE SA +E + F+ L P
Sbjct: 129 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 188
Query: 180 SLLEQGSAV 188
S L Q S V
Sbjct: 189 SPLPQKSPV 197
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 18/189 (9%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
K++L+GD GK + PT+ ++ L T +R++L++WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET-EEQRVELSLWDTSGSPY 71
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD--- 130
+ + Y + ++L +D++R ET + W E+ Y + +L+G K D
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTDLRT 129
Query: 131 ---------RDSERAVTREEGMILAQEHKC-LFLECSAKNTE-DVKQCFKDLLYKILEVP 179
+ ++ E+G +A++ ++LE SA +E + F+ L P
Sbjct: 130 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 189
Query: 180 SLLEQGSAV 188
S L Q S V
Sbjct: 190 SPLPQKSPV 198
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 3/164 (1%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXV-HDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ- 71
FK++L+G+SGVGK H D + + V + + L ++D Q
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131
+ G L + ++V+ VT R +F+ + + + + D ILVGNK D
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILVGNKSDL 121
Query: 132 DSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
R V+ EEG LA C +E SA + ++ F+ + +I
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 7/169 (4%)
Query: 11 DYSFKILLIGDSGVGKXXXXXX---XXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWD 67
D FK++L+G+SGVGK H+ + D + + V + + L ++D
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENS--EDTYERRIMVDKEEVTLIVYD 67
Query: 68 TAGQ-ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVG 126
Q + G L + ++V+ VT R +F+ + + + + D ILVG
Sbjct: 68 IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILVG 126
Query: 127 NKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175
NK D R V+ EEG LA C +E SA + ++ F+ + +I
Sbjct: 127 NKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 14/170 (8%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G G GK V PTIG + + T+ K LKL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQTS 74
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTN---QDCVKILVGNKVD 130
YY +I V D T ++ + S KE+ L QD ++ NK D
Sbjct: 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTAS----KELHLMLQEEELQDAALLVFANKQD 130
Query: 131 RD---SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177
+ S V++E ++ ++ + SA E + + L+ I E
Sbjct: 131 QPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 55 TVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDV------TRRETFTNLSSVWA 108
TV + + L + DTA + Y AH ++VY V ++ L ++ A
Sbjct: 63 TVDHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA 121
Query: 109 KEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSA-KNTEDVKQC 167
KE T + +L+GNK+D R VT+ EG+ LA CLF E SA + E V+
Sbjct: 122 KE-----TQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHV 176
Query: 168 FKD 170
F +
Sbjct: 177 FHE 179
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed
With Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain
Carrying The Mutation Of The Catalytic Glutamate To
Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G GK + PTIG + + TV K + T+WD GQ++
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDK 56
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
L Y++ G+I V D RE
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRE 81
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G GK + PTIG + + TV K + T+WD GQ++
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDK 221
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
L Y++ G+I V D RE
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRE 246
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Monomeric Crystal Form
Length = 181
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G GK + PTIG + + TV K + T+WD GQ++
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDK 73
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
L Y++ G+I V D RE
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRE 98
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G GK + PTIG + + TV K + T+WD GQ++
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDK 72
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
L Y++ G+I V D RE
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDSNDRE 97
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF 74
+IL++G GK V PTIG + + TV + + T+WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVE----TVEFRNISFTVWDVGGQDKI 74
Query: 75 GTLTSSYYRGAHGIILVYDVTRRE 98
L YY G+I V D RE
Sbjct: 75 RPLWRHYYSNTDGLIFVVDSNDRE 98
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G GK + PTIG + + TV K + T+WD GQ++
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNICFTVWDVGGQDK 85
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133
L Y++ G+I V D RE + K ++ +D V ++ NK D +
Sbjct: 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ-EDELRDAVLLVFANKQDMPN 144
Query: 134 ERAVT 138
V+
Sbjct: 145 AMPVS 149
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G GK + PTIG + + TV K + T+WD GQ++
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDK 73
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
L YY+ II V D R+
Sbjct: 74 IRPLWRHYYQNTQAIIFVVDSNDRD 98
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 1 MGSKVGNNSY-DYSFKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGK 59
SK+ +N + + +IL++G G GK V PTIG + + V
Sbjct: 4 FASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVE----CVQYC 59
Query: 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97
+ T+WD GQ+R +L YY G+I V D R
Sbjct: 60 NISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDR 97
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G GK PT+G + + TV K +K +WD GQ++
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 378
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
L YY G G+I V D R+
Sbjct: 379 IRPLWRHYYTGTQGLIFVVDCADRD 403
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In
Complex With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 13 SFKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72
S +IL++G GK + PTIG + + TV K + T+WD G +
Sbjct: 2 SMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGLD 57
Query: 73 RFGTLTSSYYRGAHGIILVYDVTRRE 98
+ L Y++ G+I V D RE
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRE 83
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G GK + PTIG + + TV K + T+WD GQ++
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDK 76
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
L Y++ G+I V D R+
Sbjct: 77 IRPLWRHYFQNTQGLIFVVDSNDRD 101
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+,
And Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G GK PT+G + + TV K +K +WD GQ++
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 69
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
L YY G G+I V D R+
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRD 94
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G GK PT+G + + TV K +K +WD GQ++
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 56
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
L YY G G+I V D R+
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRD 81
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G GK PT+G + + TV K +K +WD GQ++
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 68
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
L YY G G+I V D R+
Sbjct: 69 IRPLWRHYYTGTQGLIFVVDCADRD 93
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G GK PT+G + + TV K +K +WD GQ++
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 56
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
L YY G G+I V D R+
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRD 81
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 22/161 (13%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
++L++G GK V SPT+G F IK L G KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKS 74
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTN----LSSVWAKE------VELYSTNQDCVKI 123
+ +Y+ G+I V D R+ + L S+ +E + +++ QD
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134
Query: 124 LVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDV 164
L N + E R H CSA ED+
Sbjct: 135 LSXNAIQEALELDSIR--------SHHWRIQGCSAVTGEDL 167
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 22/161 (13%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
++L++G GK V SPT+G F IK L G KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKS 74
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTN----LSSVWAKE------VELYSTNQDCVKI 123
+ +Y+ G+I V D R+ + L S+ +E + +++ QD
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134
Query: 124 LVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDV 164
L N + E R H CSA ED+
Sbjct: 135 LSCNAIQEALELDSIR--------SHHWRIQGCSAVTGEDL 167
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
++L++G GK + SPT+G + K T+ + KL IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 72
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
+ +Y+ G+I V D R+
Sbjct: 73 LRSYWRNYFESTDGLIWVVDSADRQ 97
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 39 HDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRE 98
D PT+G F ++ +T G +K IWD GQ RF ++ Y RG + I+ + D RE
Sbjct: 49 EDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADRE 104
Query: 99 TFTNLSSVWAKEVELYS-----TNQDCVKILVGNKVDRDS---ERAVTREEGMILAQEHK 150
A EL++ Q +++GNK D + E+ + + + Q+ +
Sbjct: 105 KIE------ASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDRE 158
Query: 151 --CLFLECSAKNTEDV 164
C + C K+ D+
Sbjct: 159 ICCYSISCKEKDNIDI 174
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 11 DYSFKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAG 70
D +ILL+G GK + +PT G + K +V + KL +WD G
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGG 70
Query: 71 QERFGTLTSSYYRGAHGIILVYDVTRRETF 100
Q + SY+ +I V D R+ F
Sbjct: 71 QRKIRPYWRSYFENTDILIYVIDSADRKRF 100
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF 74
+IL +G GK PT+G + + TV K +K +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDKI 57
Query: 75 GTLTSSYYRGAHGIILVYDVTRRE 98
L YY G G+I V D R+
Sbjct: 58 RPLWRHYYTGTQGLIFVVDCADRD 81
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 11 DYSFKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAG 70
D +ILL+G GK + +PT G + K +V + KL +WD G
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGG 69
Query: 71 QERFGTLTSSYYRGAHGIILVYDVTRRETF 100
Q + SY+ +I V D R+ F
Sbjct: 70 QRKIRPYWRSYFENTDILIYVIDSADRKRF 99
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHD---PSPTIGVDFKIKLLTVGGKR---LKLTIWDT 68
K+ ++G++G GK D S T+G+D K + + KR L L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 69 AGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128
AG+E F + + + VYD+++ + + W ++ +++ ILVG
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPV--ILVGTH 121
Query: 129 VDRDSER 135
+D E+
Sbjct: 122 LDVSDEK 128
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G GK PT+G + + TV K +K +WD G ++
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGLDK 59
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
L YY G G+I V D R+
Sbjct: 60 IRPLWRHYYTGTQGLIFVVDCADRD 84
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHD---PSPTIGVDFKIKLLTVGGKR---LKLTIWDT 68
K+ ++G++G GK D S T+G+D K + + KR L L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 69 AGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128
AG+E F + + + VYD+++ + + W ++ +++ ILVG
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPV--ILVGTH 119
Query: 129 VDRDSER 135
+D E+
Sbjct: 120 LDVSDEK 126
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
Length = 172
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G GK PT+G + + TV K +K +WD G ++
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGLDK 58
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
L YY G G+I V D R+
Sbjct: 59 IRPLWRHYYTGTQGLIFVVDCADRD 83
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
Query: 15 KILLIGDSGVGKXXXXXXXXXX---XVHDPSPTIGVDFKIKLLTVGGK--RLKLTIWDTA 69
K+ ++G++ VGK + D + T GV+ + +T+ ++L + DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQD--CVKILVGN 127
G + + S Y+ G + ILV+DV+ E+F + + W + ++ +++ +LV N
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKA-WFELLKSARPDRERPLRAVLVAN 140
Query: 128 KVDRDSERAVTR 139
K D +R R
Sbjct: 141 KTDLPPQRHQVR 152
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G GK PT+G + + TV K +K +WD G ++
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGLDK 69
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
L YY G G+I V D R+
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRD 94
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF 74
K++++G GK V SPTIG + ++ + + R + WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINNTRFLM--WDIGGQESL 73
Query: 75 GTLTSSYYRGAHGIILVYDVTRRE 98
+ ++YY +I+V D T RE
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF 74
K++++G GK V SPTIG + ++ + + R + WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINNTRFLM--WDIGGQESL 73
Query: 75 GTLTSSYYRGAHGIILVYDVTRRE 98
+ ++YY +I+V D T RE
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF 74
K++++G GK V SPTIG + ++ + + R + WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINNTRFLM--WDIGGQESL 78
Query: 75 GTLTSSYYRGAHGIILVYDVTRRE 98
+ ++YY +I+V D T RE
Sbjct: 79 RSSWNTYYTNTEFVIVVVDSTDRE 102
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 24/138 (17%)
Query: 39 HDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRE 98
D PT+G F ++ +T G +KL WD GQ RF ++ Y RG I+ + D +E
Sbjct: 49 EDMIPTVG--FNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE 104
Query: 99 TFTNLSSVWAKEVELYS-----TNQDCVKILVGNKVDRDSERAVTREE-------GMILA 146
A + EL++ Q +++GNK RD A+ +E I
Sbjct: 105 KIE------ASKNELHNLLDKPQLQGIPVLVLGNK--RDLPGALDEKELIEKMNLSAIQD 156
Query: 147 QEHKCLFLECSAKNTEDV 164
+E C + C K+ D+
Sbjct: 157 REICCYSISCKEKDNIDI 174
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 24/138 (17%)
Query: 39 HDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRE 98
D PT+G F ++ +T G +KL WD GQ RF ++ Y RG I+ + D +E
Sbjct: 58 EDMIPTVG--FNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE 113
Query: 99 TFTNLSSVWAKEVELYS-----TNQDCVKILVGNKVDRDSERAVTREE-------GMILA 146
A + EL++ Q +++GNK RD A+ +E I
Sbjct: 114 KIE------ASKNELHNLLDKPQLQGIPVLVLGNK--RDLPGALDEKELIEKMNLSAIQD 165
Query: 147 QEHKCLFLECSAKNTEDV 164
+E C + C K+ D+
Sbjct: 166 REICCYSISCKEKDNIDI 183
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF 74
K++++G GK V SPTIG + + + K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVE----EIVVKNTHFLMWDIGGQESL 73
Query: 75 GTLTSSYYRGAHGIILVYDVTRRE 98
+ ++YY IILV D RE
Sbjct: 74 RSSWNTYYSNTEFIILVVDSIDRE 97
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF 74
K++++G GK V SPTIG + ++ + + R + WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINNTRFLM--WDIGGQESL 79
Query: 75 GTLTSSYYRGAHGIILVYDVTRRE 98
+ ++YY +I+V D T RE
Sbjct: 80 RSSWNTYYTNTEFVIVVVDSTDRE 103
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF 74
+ILL+G GK + +PT G + K +V + KL +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGGQRKI 61
Query: 75 GTLTSSYYRGAHGIILVYDVTRRETF 100
SY+ +I V D R+ F
Sbjct: 62 RPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 22/161 (13%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
++L++G GK V SPT+G + K T+ + KL IWD G +
Sbjct: 2 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGLKS 57
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRETFTN----LSSVWAKE------VELYSTNQDCVKI 123
+ +Y+ G+I V D R+ + L S+ +E + +++ QD
Sbjct: 58 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 117
Query: 124 LVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDV 164
L N + E R H CSA ED+
Sbjct: 118 LSCNAIQEALELDSIR--------SHHWRIQGCSAVTGEDL 150
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G G GK V PTIG + + TV K LK +WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE----TVTYKNLKFQVWDLGGQTS 58
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
YY +I V D R+
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDSCDRD 83
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 42 SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFT 101
SPT+G F IK L G KL IWD GQ+ + +Y+ G+I V D R+
Sbjct: 47 SPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQ 102
Query: 102 N----LSSVWAKE------VELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC 151
+ L S+ +E + +++ QD L N + E R H
Sbjct: 103 DCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELDSIR--------SHHW 154
Query: 152 LFLECSAKNTEDV 164
CSA ED+
Sbjct: 155 RIQGCSAVTGEDL 167
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF 74
+ILL+G GK + +PT G + K +V + KL +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGGLRKI 61
Query: 75 GTLTSSYYRGAHGIILVYDVTRRETF 100
SY+ +I V D R+ F
Sbjct: 62 RPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 56/149 (37%), Gaps = 12/149 (8%)
Query: 15 KILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF 74
+IL++G G GK V PTIG + + TV K LK +WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE----TVTYKNLKFQVWDLGGLTSI 64
Query: 75 GTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE 134
YY +I V D R+ +S + + ++ NK +D E
Sbjct: 65 RPYWRCYYSNTDAVIYVVDSCDRDRI-GISKSELVAXLEEEELRKAILVVFANK--QDXE 121
Query: 135 RAVTREE-----GMILAQEHKCLFLECSA 158
+A T E G+ ++ K + SA
Sbjct: 122 QAXTSSEXANSLGLPALKDRKWQIFKTSA 150
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 14 FKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73
+IL++G G GK V PTIG + + TV K LK +WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE----TVTYKNLKFQVWDLGGLTS 60
Query: 74 FGTLTSSYYRGAHGIILVYDVTRRE 98
YY +I V D R+
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDSCDRD 85
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 43 PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTN 102
PTIG F I+ L T++D +GQ R+ L YY+ II V D + R
Sbjct: 53 PTIG--FSIE--KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDR----- 103
Query: 103 LSSVWAKEVELYSTNQDCVK------ILVGNKVD-RDSERAV 137
L V AKE N +K + NK+D RD+ +V
Sbjct: 104 LRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSV 145
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 12 YSFKILLIGDSGVGKXXXXXXXXXXXVHDPS---------PTIGVDFKIKLLTVGGKRLK 62
+ F ++++G+SG+GK ++ P T+ V+ L+ GG +L
Sbjct: 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 89
Query: 63 LTIWDTAG 70
LTI DT G
Sbjct: 90 LTIVDTPG 97
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 19/149 (12%)
Query: 62 KLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTR------RETFTNLSSVW-AKEVELY 114
K+ I+ GQ TL + G +LV D +R R + V A +V+
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT 64
Query: 115 STNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKD-LLY 173
QD V +L+G + D ++++ + + A + V C LL+
Sbjct: 65 VAGQDAVIVLLGTRNDLSPT--------TVMSEGARNIVAAMKAHGVDKVVACTSAFLLW 116
Query: 174 KILEVPSLLEQGSAVVKNQILKQKEVQES 202
+VP L+ AV + I K ++ES
Sbjct: 117 DPTKVPPRLQ---AVTDDHIRMHKVLRES 142
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 12 YSFKILLIGDSGVGKXXXXXXXXXXXVHDPS---------PTIGVDFKIKLLTVGGKRLK 62
+ F ++++G+SG+GK ++ P T+ V+ L+ GG +L
Sbjct: 2 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 61
Query: 63 LTIWDTAG 70
LTI DT G
Sbjct: 62 LTIVDTPG 69
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 12 YSFKILLIGDSGVGKXXXXXXXXXXXVHDPS---------PTIGVDFKIKLLTVGGKRLK 62
+ F ++++G+SG+GK ++ P T+ V+ L+ GG +L
Sbjct: 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 66
Query: 63 LTIWDTAG 70
LTI DT G
Sbjct: 67 LTIVDTPG 74
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
Length = 327
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 112 ELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDL 171
E+ +Q + L+G SER+ EG+++ E L + T+D K FKD
Sbjct: 28 EMLGKDQPVILQLLG------SERSFQALEGVVMELEDCAFPLLAGLEATDDPKVAFKDA 81
Query: 172 LYKIL 176
Y +L
Sbjct: 82 DYALL 86
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 5/122 (4%)
Query: 10 YDYSFKILLIGDSGVGKXXXXXXXXXXXVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTA 69
Y S K++ +G GK + PT+ + LT+ G + T +D
Sbjct: 32 YKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTL--HPTSEELTIAG--MTFTTFDLG 87
Query: 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKV 129
G E+ + +Y +GI+ + D S V + T + +++GNK+
Sbjct: 88 GHEQARRVWKNYLPAINGIVFLVDCADHSRLVE-SKVELNALMTDETISNVPILILGNKI 146
Query: 130 DR 131
DR
Sbjct: 147 DR 148
>pdb|3KML|A Chain A, Circular Permutant Of The Tobacco Mosaic Virus
pdb|3KML|B Chain B, Circular Permutant Of The Tobacco Mosaic Virus
pdb|3KML|C Chain C, Circular Permutant Of The Tobacco Mosaic Virus
pdb|3KML|D Chain D, Circular Permutant Of The Tobacco Mosaic Virus
pdb|3KML|E Chain E, Circular Permutant Of The Tobacco Mosaic Virus
pdb|3KML|F Chain F, Circular Permutant Of The Tobacco Mosaic Virus
pdb|3KML|G Chain G, Circular Permutant Of The Tobacco Mosaic Virus
pdb|3KML|H Chain H, Circular Permutant Of The Tobacco Mosaic Virus
pdb|3KML|I Chain I, Circular Permutant Of The Tobacco Mosaic Virus
pdb|3KML|J Chain J, Circular Permutant Of The Tobacco Mosaic Virus
pdb|3KML|K Chain K, Circular Permutant Of The Tobacco Mosaic Virus
pdb|3KML|L Chain L, Circular Permutant Of The Tobacco Mosaic Virus
pdb|3KML|M Chain M, Circular Permutant Of The Tobacco Mosaic Virus
pdb|3KML|N Chain N, Circular Permutant Of The Tobacco Mosaic Virus
pdb|3KML|O Chain O, Circular Permutant Of The Tobacco Mosaic Virus
pdb|3KML|P Chain P, Circular Permutant Of The Tobacco Mosaic Virus
pdb|3KML|Q Chain Q, Circular Permutant Of The Tobacco Mosaic Virus
Length = 161
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 75 GTLTSSYYRGAHGIILV--------YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVG 126
G+ S + + G++ Y +T F LSS WA +EL + C L G
Sbjct: 39 GSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINL---CTNAL-G 94
Query: 127 NKVDRDSERAVTREE 141
N+ R V + +
Sbjct: 95 NQFQTQQARTVVQRQ 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,752,589
Number of Sequences: 62578
Number of extensions: 215754
Number of successful extensions: 1091
Number of sequences better than 100.0: 349
Number of HSP's better than 100.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 352
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)