Query 028315
Match_columns 210
No_of_seqs 145 out of 1636
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 09:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.1E-42 2.3E-47 244.6 19.9 200 8-210 4-205 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 4.2E-41 9.1E-46 235.7 19.2 196 11-210 3-200 (200)
3 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.6E-40 3.5E-45 232.9 18.7 169 11-180 20-189 (221)
4 KOG0080 GTPase Rab18, small G 100.0 4.9E-40 1.1E-44 223.4 18.9 202 8-210 6-208 (209)
5 KOG0078 GTP-binding protein SE 100.0 3.4E-39 7.4E-44 230.1 21.6 176 4-181 3-179 (207)
6 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.7E-38 5.8E-43 234.3 22.8 195 14-209 1-201 (201)
7 PLN03118 Rab family protein; P 100.0 4.3E-37 9.3E-42 229.5 24.9 205 6-210 7-211 (211)
8 KOG0394 Ras-related GTPase [Ge 100.0 1.4E-37 3.1E-42 216.1 17.0 171 10-181 6-183 (210)
9 cd04121 Rab40 Rab40 subfamily. 100.0 1.3E-36 2.8E-41 222.3 22.4 168 10-180 3-171 (189)
10 KOG0098 GTPase Rab2, small G p 100.0 7.4E-37 1.6E-41 212.9 17.8 169 10-180 3-172 (216)
11 cd04120 Rab12 Rab12 subfamily. 100.0 3.3E-36 7E-41 222.2 22.4 163 14-178 1-165 (202)
12 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.5E-36 3.2E-41 215.8 19.1 177 4-182 5-182 (222)
13 PLN03110 Rab GTPase; Provision 100.0 1.6E-35 3.5E-40 221.4 23.8 169 9-179 8-177 (216)
14 PTZ00369 Ras-like protein; Pro 100.0 1.2E-35 2.7E-40 218.0 21.8 183 12-209 4-187 (189)
15 cd04125 RabA_like RabA-like su 100.0 2.3E-35 5E-40 216.5 22.1 185 14-210 1-186 (188)
16 cd04110 Rab35 Rab35 subfamily. 100.0 3.8E-35 8.3E-40 217.0 23.3 169 11-182 4-173 (199)
17 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 4.7E-35 1E-39 219.5 23.7 167 9-178 9-190 (232)
18 cd04144 Ras2 Ras2 subfamily. 100.0 1.8E-35 3.9E-40 217.3 19.9 185 15-210 1-188 (190)
19 cd04112 Rab26 Rab26 subfamily. 100.0 4E-35 8.6E-40 215.7 21.4 189 14-209 1-191 (191)
20 KOG0079 GTP-binding protein H- 100.0 2E-36 4.3E-41 203.2 12.6 165 12-179 7-172 (198)
21 cd04126 Rab20 Rab20 subfamily. 100.0 5.3E-35 1.2E-39 218.0 21.3 166 14-185 1-199 (220)
22 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 8.3E-35 1.8E-39 211.8 21.7 163 11-176 3-180 (182)
23 cd04122 Rab14 Rab14 subfamily. 100.0 1E-34 2.2E-39 208.9 21.8 163 13-177 2-165 (166)
24 cd04111 Rab39 Rab39 subfamily. 100.0 1.1E-34 2.3E-39 216.2 22.4 170 12-182 1-172 (211)
25 cd04133 Rop_like Rop subfamily 100.0 1E-34 2.3E-39 210.1 21.7 160 14-176 2-173 (176)
26 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 8.7E-35 1.9E-39 210.4 20.9 163 13-177 2-165 (172)
27 cd01867 Rab8_Rab10_Rab13_like 100.0 1.9E-34 4.1E-39 207.8 21.8 165 11-177 1-166 (167)
28 cd04109 Rab28 Rab28 subfamily. 100.0 2.9E-34 6.4E-39 214.7 22.2 165 14-179 1-169 (215)
29 cd04127 Rab27A Rab27a subfamil 100.0 2.5E-34 5.3E-39 209.5 21.2 166 11-177 2-178 (180)
30 KOG0091 GTPase Rab39, small G 100.0 2.5E-35 5.4E-40 201.0 14.4 170 11-181 6-178 (213)
31 cd04131 Rnd Rnd subfamily. Th 100.0 3.3E-34 7.2E-39 208.2 21.1 161 13-176 1-176 (178)
32 KOG0088 GTPase Rab21, small G 100.0 8.8E-36 1.9E-40 202.3 11.7 178 2-181 2-180 (218)
33 cd01875 RhoG RhoG subfamily. 100.0 6.8E-34 1.5E-38 209.0 22.1 162 13-177 3-178 (191)
34 KOG0095 GTPase Rab30, small G 100.0 4.8E-35 1E-39 196.9 13.9 175 8-184 2-177 (213)
35 cd01865 Rab3 Rab3 subfamily. 100.0 1.1E-33 2.5E-38 203.3 22.0 162 14-177 2-164 (165)
36 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.4E-33 2.9E-38 203.0 21.9 162 13-176 2-164 (166)
37 KOG0093 GTPase Rab3, small G p 100.0 2E-34 4.4E-39 193.2 16.2 168 11-180 19-187 (193)
38 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 9.7E-34 2.1E-38 211.4 21.4 164 14-180 2-180 (222)
39 cd04117 Rab15 Rab15 subfamily. 100.0 1.1E-33 2.5E-38 202.5 20.9 159 14-174 1-160 (161)
40 cd04119 RJL RJL (RabJ-Like) su 100.0 1.3E-33 2.9E-38 203.0 21.1 163 14-177 1-168 (168)
41 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.5E-33 3.2E-38 204.4 20.8 160 13-175 1-174 (175)
42 cd04136 Rap_like Rap-like subf 100.0 1.2E-33 2.7E-38 202.5 20.1 160 14-175 2-162 (163)
43 KOG0086 GTPase Rab4, small G p 100.0 3.7E-34 8.1E-39 193.3 15.6 180 7-188 3-183 (214)
44 cd04132 Rho4_like Rho4-like su 100.0 2E-33 4.3E-38 206.0 21.0 165 14-181 1-172 (187)
45 cd04118 Rab24 Rab24 subfamily. 100.0 5.7E-33 1.2E-37 204.5 22.9 164 14-180 1-170 (193)
46 PLN03071 GTP-binding nuclear p 100.0 6.1E-33 1.3E-37 207.8 23.1 165 11-180 11-176 (219)
47 cd01866 Rab2 Rab2 subfamily. 100.0 6.5E-33 1.4E-37 200.0 22.3 165 11-177 2-167 (168)
48 cd01868 Rab11_like Rab11-like. 100.0 5.1E-33 1.1E-37 199.8 21.5 162 12-175 2-164 (165)
49 cd04175 Rap1 Rap1 subgroup. T 100.0 4E-33 8.6E-38 200.2 20.8 162 13-176 1-163 (164)
50 cd04128 Spg1 Spg1p. Spg1p (se 100.0 5.4E-33 1.2E-37 202.5 20.8 167 14-183 1-173 (182)
51 PF00071 Ras: Ras family; Int 100.0 7.2E-33 1.6E-37 198.4 21.1 160 15-176 1-161 (162)
52 cd01864 Rab19 Rab19 subfamily. 100.0 6.8E-33 1.5E-37 199.2 20.9 161 12-174 2-164 (165)
53 cd04113 Rab4 Rab4 subfamily. 100.0 6.6E-33 1.4E-37 198.5 20.4 159 14-174 1-160 (161)
54 cd04134 Rho3 Rho3 subfamily. 100.0 8.6E-33 1.9E-37 202.9 21.3 160 15-177 2-175 (189)
55 cd04176 Rap2 Rap2 subgroup. T 100.0 7.6E-33 1.6E-37 198.5 20.6 161 13-175 1-162 (163)
56 smart00173 RAS Ras subfamily o 100.0 1E-32 2.3E-37 198.0 20.6 161 14-176 1-162 (164)
57 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.8E-32 3.9E-37 197.9 21.6 162 15-177 2-166 (170)
58 cd01871 Rac1_like Rac1-like su 100.0 1.2E-32 2.7E-37 199.4 20.6 158 14-174 2-173 (174)
59 cd04106 Rab23_lke Rab23-like s 100.0 9.9E-33 2.2E-37 197.6 19.9 158 14-174 1-161 (162)
60 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.1E-32 4.6E-37 196.3 21.2 161 13-175 2-163 (164)
61 cd00877 Ran Ran (Ras-related n 100.0 2.6E-32 5.5E-37 196.4 21.6 161 14-179 1-162 (166)
62 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.4E-32 5.2E-37 197.3 21.0 163 12-175 1-168 (170)
63 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3.4E-32 7.4E-37 194.6 21.0 160 13-175 1-161 (162)
64 cd04116 Rab9 Rab9 subfamily. 100.0 5E-32 1.1E-36 195.6 21.5 163 10-174 2-169 (170)
65 smart00175 RAB Rab subfamily o 100.0 5.2E-32 1.1E-36 194.2 21.3 162 14-177 1-163 (164)
66 cd04124 RabL2 RabL2 subfamily. 100.0 5.9E-32 1.3E-36 193.6 21.2 159 14-178 1-160 (161)
67 PLN03108 Rab family protein; P 100.0 8.5E-32 1.8E-36 200.6 22.4 167 11-179 4-171 (210)
68 cd04140 ARHI_like ARHI subfami 100.0 6.3E-32 1.4E-36 194.2 20.9 158 14-173 2-162 (165)
69 smart00174 RHO Rho (Ras homolo 100.0 8.2E-32 1.8E-36 195.2 20.7 159 16-177 1-173 (174)
70 cd01860 Rab5_related Rab5-rela 100.0 1.5E-31 3.3E-36 191.7 21.3 161 13-175 1-162 (163)
71 cd01873 RhoBTB RhoBTB subfamil 100.0 9.5E-32 2.1E-36 197.7 19.8 158 13-174 2-194 (195)
72 cd04177 RSR1 RSR1 subgroup. R 100.0 2.3E-31 4.9E-36 191.9 21.3 162 13-176 1-164 (168)
73 cd04142 RRP22 RRP22 subfamily. 100.0 1.9E-31 4.1E-36 196.7 21.0 167 14-181 1-179 (198)
74 cd01861 Rab6 Rab6 subfamily. 100.0 1.9E-31 4.1E-36 190.8 20.4 159 14-174 1-160 (161)
75 KOG0081 GTPase Rab27, small G 100.0 4.3E-34 9.4E-39 194.2 6.2 178 7-185 3-190 (219)
76 cd01863 Rab18 Rab18 subfamily. 100.0 3.1E-31 6.7E-36 189.7 20.8 159 14-174 1-160 (161)
77 smart00176 RAN Ran (Ras-relate 100.0 2.7E-31 5.8E-36 195.7 20.8 156 19-179 1-157 (200)
78 cd04135 Tc10 TC10 subfamily. 100.0 3.6E-31 7.7E-36 191.8 20.7 159 14-175 1-173 (174)
79 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3.4E-31 7.3E-36 191.9 20.4 157 14-173 1-171 (173)
80 cd01862 Rab7 Rab7 subfamily. 100.0 6.1E-31 1.3E-35 190.1 21.3 165 14-179 1-170 (172)
81 cd04103 Centaurin_gamma Centau 100.0 3.8E-31 8.3E-36 188.6 19.5 154 14-174 1-157 (158)
82 cd04147 Ras_dva Ras-dva subfam 100.0 4.6E-31 9.9E-36 195.1 20.4 193 15-210 1-196 (198)
83 cd04101 RabL4 RabL4 (Rab-like4 100.0 5.4E-31 1.2E-35 189.0 20.2 159 14-175 1-163 (164)
84 cd04148 RGK RGK subfamily. Th 100.0 6.1E-31 1.3E-35 197.3 20.7 168 14-184 1-171 (221)
85 cd04123 Rab21 Rab21 subfamily. 100.0 1E-30 2.2E-35 187.0 20.9 160 14-175 1-161 (162)
86 cd04146 RERG_RasL11_like RERG/ 100.0 5.9E-31 1.3E-35 189.1 19.1 160 15-176 1-164 (165)
87 cd01892 Miro2 Miro2 subfamily. 100.0 9.6E-31 2.1E-35 188.7 19.9 161 12-176 3-166 (169)
88 cd04114 Rab30 Rab30 subfamily. 100.0 3.5E-30 7.5E-35 185.7 22.5 163 11-175 5-168 (169)
89 cd04139 RalA_RalB RalA/RalB su 100.0 2.7E-30 5.8E-35 185.2 20.7 162 14-177 1-163 (164)
90 cd04143 Rhes_like Rhes_like su 100.0 1.7E-30 3.7E-35 197.3 20.3 161 14-176 1-171 (247)
91 KOG0097 GTPase Rab14, small G 100.0 8.9E-31 1.9E-35 175.0 15.6 172 8-181 6-178 (215)
92 cd04149 Arf6 Arf6 subfamily. 100.0 8.8E-31 1.9E-35 188.7 15.5 155 12-173 8-167 (168)
93 cd00154 Rab Rab family. Rab G 100.0 6.4E-30 1.4E-34 181.8 19.7 157 14-172 1-158 (159)
94 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.9E-30 4.1E-35 189.5 17.2 169 13-184 3-178 (183)
95 cd04158 ARD1 ARD1 subfamily. 100.0 2.2E-30 4.8E-35 186.9 17.2 159 15-180 1-165 (169)
96 smart00177 ARF ARF-like small 100.0 6.3E-31 1.4E-35 190.7 14.4 158 11-175 11-173 (175)
97 cd01870 RhoA_like RhoA-like su 100.0 1E-29 2.2E-34 184.3 20.5 159 14-175 2-174 (175)
98 PLN00223 ADP-ribosylation fact 100.0 4E-30 8.8E-35 187.3 17.1 160 11-177 15-179 (181)
99 cd04129 Rho2 Rho2 subfamily. 100.0 2.5E-29 5.3E-34 184.3 21.2 165 14-181 2-178 (187)
100 cd00157 Rho Rho (Ras homology) 100.0 2.9E-29 6.4E-34 181.1 20.4 157 14-173 1-170 (171)
101 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.1E-30 2.3E-35 186.7 12.5 153 14-173 1-158 (159)
102 PTZ00133 ADP-ribosylation fact 100.0 8.1E-30 1.8E-34 185.9 17.2 161 12-179 16-181 (182)
103 cd04137 RheB Rheb (Ras Homolog 100.0 4.1E-29 8.9E-34 182.0 20.2 165 14-180 2-167 (180)
104 cd00876 Ras Ras family. The R 100.0 3.7E-29 8E-34 178.5 18.8 158 15-174 1-159 (160)
105 KOG0395 Ras-related GTPase [Ge 100.0 2.1E-29 4.6E-34 184.3 17.7 167 12-180 2-169 (196)
106 cd04154 Arl2 Arl2 subfamily. 100.0 1.7E-29 3.6E-34 183.0 16.6 157 10-173 11-172 (173)
107 KOG0083 GTPase Rab26/Rab37, sm 100.0 2.9E-31 6.4E-36 175.5 6.4 164 18-183 2-167 (192)
108 cd01893 Miro1 Miro1 subfamily. 100.0 6.6E-29 1.4E-33 178.7 18.7 161 14-177 1-165 (166)
109 KOG0393 Ras-related small GTPa 100.0 1.4E-29 3E-34 181.7 13.1 167 11-180 2-183 (198)
110 PTZ00132 GTP-binding nuclear p 100.0 5.9E-28 1.3E-32 180.7 22.6 176 8-188 4-180 (215)
111 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 3.5E-29 7.6E-34 179.7 13.2 151 16-173 2-163 (164)
112 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2.6E-28 5.6E-33 176.9 16.5 155 12-173 14-173 (174)
113 cd04151 Arl1 Arl1 subfamily. 100.0 8.1E-29 1.8E-33 176.8 12.5 152 15-173 1-157 (158)
114 cd00879 Sar1 Sar1 subfamily. 100.0 6E-28 1.3E-32 177.3 15.3 157 11-174 17-189 (190)
115 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.3E-27 5E-32 174.7 18.0 147 14-161 1-175 (202)
116 PF00025 Arf: ADP-ribosylation 100.0 1.2E-27 2.6E-32 173.4 16.2 158 11-175 12-175 (175)
117 cd04156 ARLTS1 ARLTS1 subfamil 100.0 7.4E-28 1.6E-32 172.1 14.9 153 15-173 1-159 (160)
118 cd04157 Arl6 Arl6 subfamily. 100.0 2.7E-28 5.8E-33 174.6 12.6 152 15-173 1-161 (162)
119 cd00878 Arf_Arl Arf (ADP-ribos 100.0 9.3E-28 2E-32 171.2 14.7 152 15-173 1-157 (158)
120 cd04161 Arl2l1_Arl13_like Arl2 100.0 7.9E-28 1.7E-32 173.2 13.3 154 15-173 1-166 (167)
121 PTZ00099 rab6; Provisional 100.0 8.8E-27 1.9E-31 168.7 18.5 143 37-181 4-147 (176)
122 smart00178 SAR Sar1p-like memb 100.0 3.1E-27 6.7E-32 172.7 15.4 157 11-174 15-183 (184)
123 KOG0073 GTP-binding ADP-ribosy 100.0 1.2E-26 2.5E-31 158.8 16.6 163 9-178 12-180 (185)
124 cd04160 Arfrp1 Arfrp1 subfamil 100.0 3.4E-27 7.5E-32 169.7 14.3 152 15-173 1-166 (167)
125 KOG4252 GTP-binding protein [S 100.0 4.5E-29 9.8E-34 173.0 4.0 176 3-181 10-186 (246)
126 PLN00023 GTP-binding protein; 99.9 9.5E-26 2.1E-30 174.1 18.9 169 10-179 18-233 (334)
127 cd01890 LepA LepA subfamily. 99.9 3.6E-26 7.8E-31 166.3 15.0 153 15-175 2-176 (179)
128 cd04159 Arl10_like Arl10-like 99.9 4.8E-26 1E-30 161.9 13.4 151 16-173 2-158 (159)
129 cd04155 Arl3 Arl3 subfamily. 99.9 1.9E-25 4.1E-30 161.6 16.6 153 11-173 12-172 (173)
130 cd01897 NOG NOG1 is a nucleola 99.9 2.1E-25 4.6E-30 160.6 16.0 155 15-175 2-167 (168)
131 cd01898 Obg Obg subfamily. Th 99.9 1.7E-25 3.7E-30 161.3 14.3 157 15-174 2-169 (170)
132 PRK15494 era GTPase Era; Provi 99.9 2.8E-25 6.1E-30 176.0 16.5 168 11-187 50-227 (339)
133 TIGR00231 small_GTP small GTP- 99.9 1.7E-24 3.7E-29 153.5 18.5 158 13-172 1-160 (161)
134 TIGR00436 era GTP-binding prot 99.9 3.6E-25 7.8E-30 170.8 14.5 163 15-185 2-173 (270)
135 KOG0070 GTP-binding ADP-ribosy 99.9 4.5E-25 9.8E-30 154.7 12.7 161 11-178 15-180 (181)
136 PRK12299 obgE GTPase CgtA; Rev 99.9 1.2E-24 2.7E-29 171.3 16.2 162 14-177 159-329 (335)
137 cd01878 HflX HflX subfamily. 99.9 1.3E-24 2.8E-29 161.4 14.0 157 11-175 39-204 (204)
138 cd04171 SelB SelB subfamily. 99.9 4.5E-24 9.8E-29 152.8 15.3 150 15-173 2-163 (164)
139 COG1100 GTPase SAR1 and relate 99.9 2E-23 4.2E-28 156.6 19.0 171 12-183 4-192 (219)
140 TIGR02528 EutP ethanolamine ut 99.9 1.3E-24 2.7E-29 152.4 11.5 134 15-172 2-141 (142)
141 PRK04213 GTP-binding protein; 99.9 2.9E-24 6.3E-29 159.2 12.0 154 11-177 7-193 (201)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.2E-23 4.7E-28 150.0 15.9 156 15-176 2-166 (168)
143 cd01879 FeoB Ferrous iron tran 99.9 2.9E-23 6.4E-28 147.8 16.0 147 18-175 1-156 (158)
144 KOG0075 GTP-binding ADP-ribosy 99.9 7.6E-25 1.6E-29 147.2 7.0 157 13-176 20-182 (186)
145 cd00882 Ras_like_GTPase Ras-li 99.9 5.5E-23 1.2E-27 144.5 16.9 153 18-172 1-156 (157)
146 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.2E-23 4.7E-28 148.1 14.7 147 14-175 2-156 (157)
147 COG1159 Era GTPase [General fu 99.9 8.4E-24 1.8E-28 159.3 12.2 172 11-188 4-184 (298)
148 PF02421 FeoB_N: Ferrous iron 99.9 1.6E-24 3.4E-29 151.9 7.6 147 14-171 1-156 (156)
149 PRK03003 GTP-binding protein D 99.9 5.8E-24 1.2E-28 175.7 12.1 161 12-180 210-386 (472)
150 cd01881 Obg_like The Obg-like 99.9 1.4E-23 3E-28 152.0 12.2 155 18-174 1-175 (176)
151 cd01891 TypA_BipA TypA (tyrosi 99.9 2.3E-23 5E-28 153.5 13.3 148 14-167 3-173 (194)
152 KOG3883 Ras family small GTPas 99.9 1.7E-22 3.8E-27 136.8 16.2 167 12-179 8-178 (198)
153 cd01894 EngA1 EngA1 subfamily. 99.9 2.7E-23 5.8E-28 147.7 12.3 147 17-174 1-156 (157)
154 TIGR02729 Obg_CgtA Obg family 99.9 1.1E-22 2.4E-27 160.2 17.0 159 14-175 158-328 (329)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 8.4E-23 1.8E-27 166.5 16.5 152 11-178 201-362 (442)
156 TIGR03594 GTPase_EngA ribosome 99.9 6.5E-23 1.4E-27 168.3 16.0 162 11-179 170-347 (429)
157 PRK00089 era GTPase Era; Revie 99.9 8.5E-23 1.9E-27 159.5 15.8 168 12-185 4-180 (292)
158 PRK03003 GTP-binding protein D 99.9 4.7E-23 1E-27 170.3 14.5 155 13-177 38-200 (472)
159 PRK05291 trmE tRNA modificatio 99.9 4.8E-23 1E-27 168.8 14.2 150 12-177 214-371 (449)
160 TIGR03156 GTP_HflX GTP-binding 99.9 1.6E-22 3.4E-27 160.6 15.8 153 12-174 188-350 (351)
161 TIGR01393 lepA GTP-binding pro 99.9 1.9E-22 4E-27 169.8 16.8 157 13-177 3-181 (595)
162 PF08477 Miro: Miro-like prote 99.9 2.1E-22 4.7E-27 136.9 13.8 114 15-130 1-119 (119)
163 cd00881 GTP_translation_factor 99.9 3E-22 6.6E-27 146.6 14.6 156 15-176 1-187 (189)
164 cd04163 Era Era subfamily. Er 99.9 4.2E-22 9E-27 142.6 14.8 156 13-174 3-167 (168)
165 PRK12297 obgE GTPase CgtA; Rev 99.9 8.6E-22 1.9E-26 159.0 18.3 161 15-181 160-332 (424)
166 cd01895 EngA2 EngA2 subfamily. 99.9 6.5E-22 1.4E-26 142.6 15.2 154 13-174 2-173 (174)
167 KOG0071 GTP-binding ADP-ribosy 99.9 5.7E-22 1.2E-26 132.5 13.5 158 12-176 16-178 (180)
168 cd01889 SelB_euk SelB subfamil 99.9 4.3E-22 9.3E-27 146.5 13.5 157 14-176 1-186 (192)
169 PRK12296 obgE GTPase CgtA; Rev 99.9 4.9E-22 1.1E-26 162.4 14.4 164 14-180 160-344 (500)
170 TIGR00487 IF-2 translation ini 99.9 2E-21 4.4E-26 162.9 18.2 154 10-173 84-247 (587)
171 PRK12298 obgE GTPase CgtA; Rev 99.9 9.5E-22 2.1E-26 157.9 15.4 169 15-186 161-343 (390)
172 PRK15467 ethanolamine utilizat 99.9 6.6E-22 1.4E-26 140.9 12.2 140 15-177 3-148 (158)
173 cd01888 eIF2_gamma eIF2-gamma 99.9 8.2E-22 1.8E-26 146.1 12.4 160 14-177 1-200 (203)
174 PRK00454 engB GTP-binding prot 99.9 2.9E-21 6.3E-26 142.4 14.7 160 9-177 20-195 (196)
175 TIGR03594 GTPase_EngA ribosome 99.9 9.9E-22 2.2E-26 161.3 13.3 152 15-177 1-161 (429)
176 PRK00093 GTP-binding protein D 99.9 3E-21 6.5E-26 158.7 15.4 160 12-178 172-346 (435)
177 PRK11058 GTPase HflX; Provisio 99.9 2.4E-21 5.3E-26 157.2 14.4 157 14-178 198-364 (426)
178 CHL00189 infB translation init 99.9 5.4E-21 1.2E-25 162.7 16.7 157 10-175 241-409 (742)
179 cd04105 SR_beta Signal recogni 99.9 1.2E-20 2.7E-25 139.7 16.2 119 15-133 2-123 (203)
180 TIGR03598 GTPase_YsxC ribosome 99.9 3.1E-21 6.8E-26 140.4 12.4 150 7-165 12-179 (179)
181 PRK05433 GTP-binding protein L 99.9 5.2E-21 1.1E-25 161.3 15.5 159 11-177 5-185 (600)
182 PF00009 GTP_EFTU: Elongation 99.9 1.2E-21 2.6E-26 143.7 10.1 159 12-176 2-187 (188)
183 KOG1673 Ras GTPases [General f 99.9 3.8E-21 8.3E-26 130.7 11.5 176 5-183 12-193 (205)
184 PRK05306 infB translation init 99.9 1E-20 2.2E-25 162.4 16.9 154 10-174 287-450 (787)
185 PRK00093 GTP-binding protein D 99.9 4.5E-21 9.7E-26 157.6 14.0 148 14-174 2-160 (435)
186 PRK09518 bifunctional cytidyla 99.9 9.1E-21 2E-25 163.5 15.3 154 13-177 275-437 (712)
187 cd00880 Era_like Era (E. coli 99.9 9.3E-21 2E-25 134.4 12.8 151 18-174 1-162 (163)
188 TIGR00475 selB selenocysteine- 99.9 1.6E-20 3.5E-25 158.1 16.3 155 14-179 1-169 (581)
189 PRK09554 feoB ferrous iron tra 99.9 3E-20 6.5E-25 160.1 18.1 153 13-175 3-167 (772)
190 KOG0072 GTP-binding ADP-ribosy 99.9 1.2E-21 2.7E-26 131.4 7.2 161 11-178 16-181 (182)
191 PRK09518 bifunctional cytidyla 99.9 3.5E-21 7.6E-26 166.1 11.8 158 12-179 449-624 (712)
192 COG1160 Predicted GTPases [Gen 99.9 1.7E-20 3.7E-25 148.9 14.5 163 12-180 177-355 (444)
193 TIGR00437 feoB ferrous iron tr 99.9 1.8E-20 4E-25 157.9 14.9 146 20-175 1-154 (591)
194 KOG0076 GTP-binding ADP-ribosy 99.8 2.8E-21 6E-26 133.8 7.7 159 13-178 17-189 (197)
195 COG1160 Predicted GTPases [Gen 99.8 8.1E-21 1.8E-25 150.7 10.7 152 14-176 4-165 (444)
196 KOG0074 GTP-binding ADP-ribosy 99.8 1.4E-20 3.1E-25 126.0 9.8 160 11-175 15-178 (185)
197 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1.9E-20 4.1E-25 131.4 10.1 175 11-190 8-183 (216)
198 PRK12317 elongation factor 1-a 99.8 4.3E-20 9.2E-25 151.2 13.3 155 11-168 4-197 (425)
199 COG0486 ThdF Predicted GTPase 99.8 7.8E-20 1.7E-24 145.5 14.0 155 12-178 216-378 (454)
200 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.1E-20 6.8E-25 138.2 10.9 148 15-167 1-185 (208)
201 KOG1423 Ras-like GTPase ERA [C 99.8 9.8E-20 2.1E-24 137.2 13.2 173 11-188 70-283 (379)
202 TIGR00483 EF-1_alpha translati 99.8 9.4E-20 2E-24 149.1 13.2 155 11-168 5-199 (426)
203 TIGR01394 TypA_BipA GTP-bindin 99.8 1.3E-19 2.7E-24 152.5 13.9 158 15-178 3-193 (594)
204 PRK10218 GTP-binding protein; 99.8 5.9E-19 1.3E-23 148.4 17.7 160 12-177 4-196 (607)
205 cd01884 EF_Tu EF-Tu subfamily. 99.8 4.4E-19 9.6E-24 130.3 14.7 147 13-165 2-172 (195)
206 cd01896 DRG The developmentall 99.8 7.4E-19 1.6E-23 132.7 16.1 152 15-176 2-226 (233)
207 cd04168 TetM_like Tet(M)-like 99.8 2.2E-19 4.9E-24 135.7 12.3 112 15-132 1-129 (237)
208 TIGR00491 aIF-2 translation in 99.8 5.9E-19 1.3E-23 148.0 15.8 154 13-175 4-215 (590)
209 TIGR03680 eif2g_arch translati 99.8 2.1E-19 4.5E-24 146.0 12.7 162 11-176 2-196 (406)
210 COG2229 Predicted GTPase [Gene 99.8 1.8E-18 3.9E-23 121.4 15.2 155 10-174 7-176 (187)
211 KOG4423 GTP-binding protein-li 99.8 7.4E-22 1.6E-26 138.0 -2.6 185 10-195 22-214 (229)
212 PRK04000 translation initiatio 99.8 6.2E-19 1.4E-23 143.2 13.2 163 9-176 5-201 (411)
213 PF10662 PduV-EutP: Ethanolami 99.8 9.7E-19 2.1E-23 120.1 11.8 135 15-172 3-142 (143)
214 PRK12736 elongation factor Tu; 99.8 2.5E-18 5.5E-23 139.2 14.3 159 12-176 11-201 (394)
215 PRK10512 selenocysteinyl-tRNA- 99.8 3.3E-18 7.1E-23 144.7 15.4 157 15-177 2-167 (614)
216 cd04167 Snu114p Snu114p subfam 99.8 1.9E-18 4.2E-23 129.0 12.3 112 15-132 2-136 (213)
217 cd01876 YihA_EngB The YihA (En 99.8 3.4E-18 7.4E-23 122.5 13.1 150 16-174 2-169 (170)
218 PRK04004 translation initiatio 99.8 7.6E-18 1.7E-22 141.8 16.6 155 11-174 4-216 (586)
219 cd01883 EF1_alpha Eukaryotic e 99.8 9.9E-19 2.1E-23 131.1 9.5 148 15-166 1-195 (219)
220 CHL00071 tufA elongation facto 99.8 7.9E-18 1.7E-22 136.9 15.0 156 1-163 1-180 (409)
221 COG0370 FeoB Fe2+ transport sy 99.8 5.6E-18 1.2E-22 140.3 14.0 157 13-179 3-167 (653)
222 PRK12735 elongation factor Tu; 99.8 9.2E-18 2E-22 136.0 14.5 159 11-175 10-202 (396)
223 TIGR00485 EF-Tu translation el 99.8 7.3E-18 1.6E-22 136.6 13.9 146 11-162 10-179 (394)
224 COG0218 Predicted GTPase [Gene 99.8 1.8E-17 3.8E-22 118.9 13.5 158 11-177 22-198 (200)
225 KOG1707 Predicted Ras related/ 99.8 2.9E-18 6.3E-23 138.9 10.2 165 11-176 7-175 (625)
226 KOG0462 Elongation factor-type 99.8 1.6E-17 3.5E-22 133.8 13.2 166 9-180 56-239 (650)
227 cd04165 GTPBP1_like GTPBP1-lik 99.7 5.7E-17 1.2E-21 121.5 14.5 152 15-172 1-219 (224)
228 KOG1489 Predicted GTP-binding 99.7 5E-17 1.1E-21 123.2 14.0 154 15-173 198-364 (366)
229 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 2.2E-17 4.9E-22 123.3 11.2 169 15-185 1-185 (232)
230 cd01885 EF2 EF2 (for archaea a 99.7 1.2E-16 2.6E-21 119.3 14.2 112 15-132 2-138 (222)
231 PLN03126 Elongation factor Tu; 99.7 1.3E-16 2.8E-21 131.3 14.8 147 11-163 79-249 (478)
232 cd04169 RF3 RF3 subfamily. Pe 99.7 1.1E-16 2.3E-21 123.1 13.3 115 14-134 3-138 (267)
233 PRK00741 prfC peptide chain re 99.7 1.1E-16 2.4E-21 133.3 14.2 116 11-132 8-144 (526)
234 COG1084 Predicted GTPase [Gene 99.7 8.9E-17 1.9E-21 122.7 12.4 160 12-177 167-337 (346)
235 TIGR02034 CysN sulfate adenyly 99.7 3.7E-17 8.1E-22 132.8 11.1 148 14-166 1-187 (406)
236 PRK05124 cysN sulfate adenylyl 99.7 4.4E-17 9.5E-22 134.4 11.4 152 11-167 25-216 (474)
237 PLN03127 Elongation factor Tu; 99.7 2.2E-16 4.9E-21 129.2 15.4 159 12-176 60-252 (447)
238 cd04104 p47_IIGP_like p47 (47- 99.7 1.4E-16 2.9E-21 117.6 12.8 159 13-180 1-188 (197)
239 cd01886 EF-G Elongation factor 99.7 6.1E-17 1.3E-21 124.5 11.3 113 15-133 1-130 (270)
240 PRK00049 elongation factor Tu; 99.7 2E-16 4.3E-21 128.2 14.8 158 11-174 10-201 (396)
241 COG2262 HflX GTPases [General 99.7 4E-16 8.6E-21 122.5 14.7 160 12-180 191-360 (411)
242 PLN00043 elongation factor 1-a 99.7 3E-16 6.6E-21 128.5 14.2 148 12-166 6-203 (447)
243 cd04170 EF-G_bact Elongation f 99.7 5.4E-17 1.2E-21 125.3 9.0 149 15-171 1-168 (268)
244 PRK13351 elongation factor G; 99.7 1.5E-16 3.2E-21 137.4 12.2 117 11-133 6-139 (687)
245 COG0536 Obg Predicted GTPase [ 99.7 4.2E-16 9E-21 119.6 13.0 162 16-179 162-336 (369)
246 KOG0077 Vesicle coat complex C 99.7 7.4E-17 1.6E-21 111.1 7.7 155 13-174 20-191 (193)
247 PTZ00141 elongation factor 1- 99.7 4.3E-16 9.4E-21 127.7 13.7 151 11-166 5-203 (446)
248 COG0532 InfB Translation initi 99.7 1.1E-15 2.4E-20 123.6 15.5 156 11-176 3-170 (509)
249 cd01850 CDC_Septin CDC/Septin. 99.7 1.3E-15 2.7E-20 117.7 14.4 143 12-160 3-186 (276)
250 COG0481 LepA Membrane GTPase L 99.7 1.2E-15 2.5E-20 121.4 14.4 161 11-179 7-189 (603)
251 cd01899 Ygr210 Ygr210 subfamil 99.7 1.6E-15 3.4E-20 118.9 14.7 165 16-184 1-277 (318)
252 PRK05506 bifunctional sulfate 99.7 3.8E-16 8.3E-21 133.5 12.3 152 10-166 21-211 (632)
253 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.1E-15 2.4E-20 112.8 12.8 161 14-179 1-187 (196)
254 KOG1191 Mitochondrial GTPase [ 99.7 2E-16 4.3E-21 126.3 9.2 170 11-180 266-454 (531)
255 PF01926 MMR_HSR1: 50S ribosom 99.7 4.7E-16 1E-20 105.1 9.1 105 15-128 1-116 (116)
256 TIGR00503 prfC peptide chain r 99.7 1.9E-15 4.2E-20 125.9 14.6 116 11-132 9-145 (527)
257 PTZ00327 eukaryotic translatio 99.7 9E-16 1.9E-20 125.6 12.3 163 9-176 30-233 (460)
258 COG1163 DRG Predicted GTPase [ 99.7 3.6E-15 7.9E-20 113.7 14.6 164 13-184 63-297 (365)
259 PRK12739 elongation factor G; 99.7 2.8E-15 6.1E-20 129.3 14.9 118 10-133 5-139 (691)
260 COG3596 Predicted GTPase [Gene 99.6 7.1E-16 1.5E-20 115.2 8.8 163 11-179 37-225 (296)
261 PF09439 SRPRB: Signal recogni 99.6 6.4E-16 1.4E-20 110.8 7.6 118 14-134 4-127 (181)
262 TIGR00484 EF-G translation elo 99.6 6.1E-15 1.3E-19 127.3 14.5 119 10-134 7-142 (689)
263 PRK00007 elongation factor G; 99.6 1.4E-14 3.1E-19 124.9 16.1 117 10-132 7-140 (693)
264 KOG1490 GTP-binding protein CR 99.6 1.2E-15 2.6E-20 122.0 7.8 190 11-202 166-367 (620)
265 KOG1145 Mitochondrial translat 99.6 2.6E-14 5.6E-19 115.6 14.6 152 12-174 152-314 (683)
266 PRK09602 translation-associate 99.6 3.5E-14 7.7E-19 114.5 15.5 168 14-185 2-280 (396)
267 COG5256 TEF1 Translation elong 99.6 1E-14 2.2E-19 114.6 9.7 152 11-166 5-201 (428)
268 PRK12740 elongation factor G; 99.6 2E-14 4.4E-19 124.0 12.2 108 19-132 1-125 (668)
269 PRK09866 hypothetical protein; 99.6 1.6E-13 3.5E-18 114.0 16.4 109 61-173 230-350 (741)
270 COG4917 EutP Ethanolamine util 99.6 1.2E-14 2.7E-19 95.7 7.4 136 15-173 3-143 (148)
271 PF04548 AIG1: AIG1 family; I 99.5 4.9E-14 1.1E-18 105.1 9.9 166 14-184 1-194 (212)
272 TIGR00490 aEF-2 translation el 99.5 4.2E-14 9.1E-19 122.5 10.8 117 10-132 16-151 (720)
273 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.3E-13 5E-18 105.1 13.2 127 11-138 36-172 (313)
274 KOG1532 GTPase XAB1, interacts 99.5 1.5E-13 3.2E-18 102.7 10.9 181 7-192 13-280 (366)
275 cd01853 Toc34_like Toc34-like 99.5 2.8E-13 6.1E-18 102.9 12.2 126 9-135 27-165 (249)
276 COG1217 TypA Predicted membran 99.5 4.5E-13 9.8E-18 106.7 13.0 160 14-179 6-198 (603)
277 COG2895 CysN GTPases - Sulfate 99.5 4E-13 8.7E-18 103.6 11.3 150 12-166 5-193 (431)
278 PRK13768 GTPase; Provisional 99.5 3.5E-13 7.6E-18 103.0 10.9 115 62-177 98-248 (253)
279 KOG3905 Dynein light intermedi 99.5 4.4E-12 9.6E-17 97.0 15.2 171 12-184 51-298 (473)
280 KOG0090 Signal recognition par 99.5 5.1E-13 1.1E-17 96.2 9.0 115 14-132 39-158 (238)
281 cd00066 G-alpha G protein alph 99.5 2.7E-12 5.8E-17 101.2 13.8 120 58-178 158-313 (317)
282 PRK14845 translation initiatio 99.4 2.7E-12 5.9E-17 113.4 15.0 142 24-174 472-671 (1049)
283 PTZ00416 elongation factor 2; 99.4 4E-13 8.7E-18 117.9 9.3 116 11-132 17-157 (836)
284 PLN00116 translation elongatio 99.4 3.4E-13 7.4E-18 118.5 8.8 117 10-132 16-163 (843)
285 PRK07560 elongation factor EF- 99.4 2.6E-12 5.7E-17 111.7 14.1 117 10-132 17-152 (731)
286 PTZ00258 GTP-binding protein; 99.4 4.2E-12 9E-17 101.7 14.1 87 8-95 16-126 (390)
287 PF05783 DLIC: Dynein light in 99.4 8.7E-12 1.9E-16 102.2 15.6 168 12-181 24-269 (472)
288 TIGR00157 ribosome small subun 99.4 8.7E-13 1.9E-17 100.3 9.0 96 72-173 24-120 (245)
289 TIGR00101 ureG urease accessor 99.4 4.6E-12 1E-16 93.4 12.4 103 61-176 92-196 (199)
290 smart00275 G_alpha G protein a 99.4 8.9E-12 1.9E-16 99.1 14.1 119 59-178 182-336 (342)
291 KOG0461 Selenocysteine-specifi 99.4 7.5E-12 1.6E-16 96.5 12.6 161 11-177 5-194 (522)
292 TIGR02836 spore_IV_A stage IV 99.4 8.5E-12 1.8E-16 99.1 13.3 156 13-174 17-235 (492)
293 cd01882 BMS1 Bms1. Bms1 is an 99.4 1E-11 2.2E-16 93.4 12.6 138 11-162 37-182 (225)
294 COG0480 FusA Translation elong 99.4 6.3E-12 1.4E-16 107.2 11.6 118 10-133 7-142 (697)
295 KOG0458 Elongation factor 1 al 99.4 5.4E-12 1.2E-16 103.0 10.5 173 12-185 176-392 (603)
296 smart00010 small_GTPase Small 99.4 6E-12 1.3E-16 85.7 9.2 113 14-165 1-115 (124)
297 PRK09435 membrane ATPase/prote 99.4 1.3E-11 2.8E-16 97.1 12.1 104 60-176 148-260 (332)
298 KOG3886 GTP-binding protein [S 99.3 2.8E-12 6.2E-17 93.5 7.0 171 13-185 4-187 (295)
299 TIGR00073 hypB hydrogenase acc 99.3 8.3E-12 1.8E-16 92.8 9.7 150 12-174 21-205 (207)
300 PF03029 ATP_bind_1: Conserved 99.3 7.2E-13 1.6E-17 100.1 3.8 112 62-174 92-235 (238)
301 PF05049 IIGP: Interferon-indu 99.3 1.2E-11 2.6E-16 98.1 9.7 161 12-181 34-223 (376)
302 KOG1144 Translation initiation 99.3 1.3E-11 2.8E-16 103.2 9.4 164 11-180 473-691 (1064)
303 COG3276 SelB Selenocysteine-sp 99.3 2.9E-11 6.2E-16 96.1 10.9 156 15-176 2-162 (447)
304 PRK09601 GTP-binding protein Y 99.3 1.3E-10 2.8E-15 92.2 14.3 81 14-95 3-107 (364)
305 KOG1707 Predicted Ras related/ 99.3 1.5E-10 3.1E-15 94.8 14.2 161 12-179 424-586 (625)
306 COG4108 PrfC Peptide chain rel 99.3 4.1E-11 8.8E-16 95.1 9.5 116 12-133 11-147 (528)
307 PF00735 Septin: Septin; Inte 99.2 6.1E-10 1.3E-14 86.2 15.6 140 12-158 3-183 (281)
308 PF00350 Dynamin_N: Dynamin fa 99.2 3.6E-11 7.7E-16 86.4 8.2 63 62-129 102-168 (168)
309 COG5257 GCD11 Translation init 99.2 2.6E-11 5.7E-16 92.7 7.6 164 11-178 8-204 (415)
310 TIGR00993 3a0901s04IAP86 chlor 99.2 9.6E-11 2.1E-15 98.1 10.9 125 6-133 111-250 (763)
311 KOG1486 GTP-binding protein DR 99.2 7.1E-10 1.5E-14 82.3 14.1 156 13-169 62-230 (364)
312 TIGR00750 lao LAO/AO transport 99.2 1.3E-10 2.7E-15 91.2 10.8 104 60-176 126-238 (300)
313 cd01900 YchF YchF subfamily. 99.2 1.9E-10 4.2E-15 88.4 11.6 80 16-95 1-103 (274)
314 KOG0705 GTPase-activating prot 99.2 5.9E-11 1.3E-15 96.4 7.7 164 12-182 29-195 (749)
315 KOG0468 U5 snRNP-specific prot 99.2 3.3E-10 7.2E-15 94.0 10.9 118 8-131 123-261 (971)
316 COG1703 ArgK Putative periplas 99.1 5E-10 1.1E-14 85.2 9.6 153 11-176 49-254 (323)
317 PF03308 ArgK: ArgK protein; 99.1 3.2E-11 7E-16 90.3 2.2 150 12-174 28-228 (266)
318 COG0378 HypB Ni2+-binding GTPa 99.1 1.5E-09 3.3E-14 77.8 10.2 80 86-175 119-200 (202)
319 COG0012 Predicted GTPase, prob 99.1 7.6E-09 1.6E-13 81.3 14.9 84 13-96 2-109 (372)
320 KOG1487 GTP-binding protein DR 99.1 1.2E-09 2.5E-14 81.5 9.7 98 14-112 60-164 (358)
321 COG0050 TufB GTPases - transla 99.1 5.9E-10 1.3E-14 84.5 8.2 143 12-160 11-177 (394)
322 KOG0082 G-protein alpha subuni 99.1 1.6E-09 3.5E-14 85.1 10.7 123 55-178 189-346 (354)
323 cd01855 YqeH YqeH. YqeH is an 99.0 1.4E-09 3E-14 79.9 8.6 94 74-176 24-125 (190)
324 smart00053 DYNc Dynamin, GTPas 99.0 4.3E-09 9.3E-14 79.4 10.8 69 61-134 125-207 (240)
325 PRK10463 hydrogenase nickel in 99.0 1.3E-10 2.9E-15 89.3 2.3 56 119-174 230-287 (290)
326 cd01859 MJ1464 MJ1464. This f 99.0 9.5E-10 2.1E-14 78.1 6.2 95 75-177 3-97 (156)
327 PRK00098 GTPase RsgA; Reviewed 99.0 2.5E-09 5.4E-14 83.8 9.0 87 81-172 77-163 (298)
328 KOG1954 Endocytosis/signaling 99.0 3.8E-09 8.2E-14 82.5 9.8 119 11-134 56-226 (532)
329 cd04178 Nucleostemin_like Nucl 99.0 1.2E-09 2.7E-14 78.6 6.8 58 11-71 115-172 (172)
330 cd01858 NGP_1 NGP-1. Autoanti 99.0 1.6E-09 3.5E-14 77.0 7.2 57 12-71 101-157 (157)
331 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1.1E-09 2.5E-14 76.4 6.2 54 15-71 85-138 (141)
332 KOG0410 Predicted GTP binding 98.9 1.2E-09 2.6E-14 83.8 5.0 152 13-179 178-344 (410)
333 PRK12289 GTPase RsgA; Reviewed 98.9 5.9E-09 1.3E-13 83.1 8.7 92 75-173 80-172 (352)
334 PF00503 G-alpha: G-protein al 98.9 8.3E-08 1.8E-12 78.1 15.0 116 59-175 234-389 (389)
335 COG5019 CDC3 Septin family pro 98.9 5.3E-08 1.2E-12 76.2 13.1 139 11-155 21-200 (373)
336 cd01856 YlqF YlqF. Proteins o 98.9 6.5E-09 1.4E-13 75.0 6.7 58 11-71 113-170 (171)
337 cd01854 YjeQ_engC YjeQ/EngC. 98.9 1.2E-08 2.5E-13 79.6 8.5 88 79-173 73-161 (287)
338 COG5258 GTPBP1 GTPase [General 98.9 2.4E-08 5.3E-13 78.5 9.9 164 9-179 113-341 (527)
339 KOG2655 Septin family protein 98.8 1.3E-07 2.8E-12 74.5 13.4 144 12-161 20-202 (366)
340 TIGR03596 GTPase_YlqF ribosome 98.8 1E-08 2.2E-13 79.6 7.2 58 11-71 116-173 (276)
341 PRK09563 rbgA GTPase YlqF; Rev 98.8 1.5E-08 3.3E-13 79.0 8.0 59 11-72 119-177 (287)
342 COG1161 Predicted GTPases [Gen 98.8 8.2E-09 1.8E-13 81.6 6.3 57 12-71 131-187 (322)
343 cd01859 MJ1464 MJ1464. This f 98.8 1.4E-08 3.1E-13 72.1 6.9 56 12-70 100-155 (156)
344 KOG0464 Elongation factor G [T 98.8 4.9E-09 1.1E-13 83.1 4.6 136 9-152 33-185 (753)
345 TIGR03597 GTPase_YqeH ribosome 98.8 2.2E-08 4.8E-13 80.5 7.9 95 71-174 50-151 (360)
346 PRK12288 GTPase RsgA; Reviewed 98.8 5.5E-08 1.2E-12 77.5 9.5 87 82-173 118-205 (347)
347 KOG0463 GTP-binding protein GP 98.8 1.3E-08 2.8E-13 79.9 5.7 166 12-185 132-366 (641)
348 KOG2486 Predicted GTPase [Gene 98.8 2.6E-08 5.6E-13 75.1 6.7 155 10-173 133-313 (320)
349 KOG0448 Mitofusin 1 GTPase, in 98.8 2.6E-07 5.7E-12 77.4 13.0 142 12-159 108-309 (749)
350 KOG1547 Septin CDC10 and relat 98.7 3.1E-07 6.8E-12 68.0 12.0 156 12-173 45-240 (336)
351 COG5192 BMS1 GTP-binding prote 98.7 1.2E-07 2.6E-12 78.1 10.4 140 8-160 64-210 (1077)
352 cd01855 YqeH YqeH. YqeH is an 98.7 3.1E-08 6.7E-13 72.6 6.1 56 13-71 127-190 (190)
353 KOG0467 Translation elongation 98.7 6.8E-08 1.5E-12 81.6 8.6 115 10-130 6-135 (887)
354 cd01858 NGP_1 NGP-1. Autoanti 98.7 7.2E-08 1.6E-12 68.5 7.5 91 81-176 5-95 (157)
355 cd01849 YlqF_related_GTPase Yl 98.7 4.2E-08 9E-13 69.6 6.1 58 11-71 98-155 (155)
356 KOG0465 Mitochondrial elongati 98.7 3.7E-08 7.9E-13 81.4 6.1 119 11-135 37-172 (721)
357 KOG3887 Predicted small GTPase 98.6 4.6E-07 9.9E-12 67.2 10.3 168 15-185 29-211 (347)
358 KOG1491 Predicted GTP-binding 98.6 1E-07 2.3E-12 73.8 7.0 86 11-96 18-126 (391)
359 cd01851 GBP Guanylate-binding 98.6 1.4E-06 3.1E-11 65.5 13.0 87 11-98 5-105 (224)
360 TIGR00092 GTP-binding protein 98.6 1.6E-07 3.5E-12 74.8 8.2 82 14-95 3-108 (368)
361 cd01849 YlqF_related_GTPase Yl 98.6 1.7E-07 3.6E-12 66.5 7.4 85 86-176 1-85 (155)
362 KOG0460 Mitochondrial translat 98.6 1.5E-07 3.3E-12 72.9 7.0 143 12-159 53-218 (449)
363 KOG1143 Predicted translation 98.6 3.8E-07 8.3E-12 71.7 8.5 157 12-175 166-386 (591)
364 cd01856 YlqF YlqF. Proteins o 98.5 4.8E-07 1E-11 65.2 7.6 90 77-176 12-101 (171)
365 PRK12288 GTPase RsgA; Reviewed 98.5 2.1E-07 4.7E-12 74.2 6.2 57 16-75 208-271 (347)
366 PRK12289 GTPase RsgA; Reviewed 98.5 1.9E-07 4.1E-12 74.5 5.8 56 16-74 175-237 (352)
367 KOG0447 Dynamin-like GTP bindi 98.5 4.9E-06 1.1E-10 68.6 13.5 99 61-163 412-528 (980)
368 KOG0085 G protein subunit Galp 98.5 8.8E-08 1.9E-12 70.5 3.2 123 55-178 193-351 (359)
369 COG1618 Predicted nucleotide k 98.5 8.9E-06 1.9E-10 56.9 12.8 147 12-176 4-176 (179)
370 PRK10416 signal recognition pa 98.5 2.9E-06 6.4E-11 67.0 11.6 141 13-167 114-301 (318)
371 TIGR00064 ftsY signal recognit 98.5 1.4E-06 3.1E-11 67.3 9.1 96 59-168 153-260 (272)
372 PF09547 Spore_IV_A: Stage IV 98.5 8.3E-06 1.8E-10 65.5 13.4 155 13-173 17-234 (492)
373 KOG0466 Translation initiation 98.4 9.3E-08 2E-12 73.1 2.3 161 9-177 34-242 (466)
374 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 8.9E-07 1.9E-11 61.8 6.9 79 79-163 6-84 (141)
375 TIGR03596 GTPase_YlqF ribosome 98.4 1.2E-06 2.6E-11 68.0 8.0 92 77-178 14-105 (276)
376 TIGR03348 VI_IcmF type VI secr 98.4 2.5E-06 5.5E-11 78.2 11.3 112 16-133 114-257 (1169)
377 TIGR00157 ribosome small subun 98.4 5.7E-07 1.2E-11 68.6 5.9 57 15-75 122-185 (245)
378 PRK14974 cell division protein 98.4 4.2E-07 9.2E-12 72.0 5.0 94 61-168 223-322 (336)
379 KOG1424 Predicted GTP-binding 98.4 3.4E-07 7.3E-12 74.5 4.5 56 13-71 314-369 (562)
380 PRK13796 GTPase YqeH; Provisio 98.4 1.8E-06 4E-11 69.6 8.7 92 73-174 58-157 (365)
381 PRK13796 GTPase YqeH; Provisio 98.4 5.5E-07 1.2E-11 72.6 5.5 56 14-72 161-221 (365)
382 TIGR03597 GTPase_YqeH ribosome 98.4 9E-07 1.9E-11 71.2 6.6 56 14-72 155-215 (360)
383 PF03193 DUF258: Protein of un 98.4 4.5E-07 9.7E-12 64.1 4.0 57 15-74 37-100 (161)
384 cd03112 CobW_like The function 98.4 2.3E-06 5.1E-11 60.8 7.7 21 16-36 3-23 (158)
385 PRK01889 GTPase RsgA; Reviewed 98.3 3.2E-06 6.9E-11 67.9 8.1 83 82-172 110-193 (356)
386 PRK09563 rbgA GTPase YlqF; Rev 98.3 3.6E-06 7.8E-11 65.7 7.8 92 77-178 17-108 (287)
387 PF03266 NTPase_1: NTPase; In 98.3 5.7E-06 1.2E-10 59.3 8.2 135 15-164 1-163 (168)
388 TIGR01425 SRP54_euk signal rec 98.3 1E-05 2.2E-10 66.0 10.0 133 13-157 100-273 (429)
389 KOG0099 G protein subunit Galp 98.2 5.8E-06 1.3E-10 62.2 7.3 118 59-177 200-370 (379)
390 PRK00098 GTPase RsgA; Reviewed 98.2 3.2E-06 6.9E-11 66.4 6.3 57 15-74 166-229 (298)
391 cd01854 YjeQ_engC YjeQ/EngC. 98.2 3.6E-06 7.9E-11 65.7 6.2 59 14-75 162-227 (287)
392 KOG0459 Polypeptide release fa 98.2 1E-06 2.3E-11 69.8 2.7 157 11-169 77-279 (501)
393 COG0523 Putative GTPases (G3E 98.1 5.6E-05 1.2E-09 59.7 11.7 98 61-168 85-193 (323)
394 PRK14722 flhF flagellar biosyn 98.1 4.7E-05 1E-09 61.2 11.0 144 12-159 136-317 (374)
395 COG1162 Predicted GTPases [Gen 98.1 6.7E-06 1.5E-10 63.5 5.8 58 15-75 166-230 (301)
396 KOG2484 GTPase [General functi 98.1 3.5E-06 7.5E-11 66.8 4.2 60 9-71 248-307 (435)
397 COG1162 Predicted GTPases [Gen 98.1 3.4E-05 7.3E-10 59.7 8.8 94 76-173 71-164 (301)
398 cd03114 ArgK-like The function 98.0 3.2E-05 7E-10 54.3 7.2 58 60-130 91-148 (148)
399 cd03115 SRP The signal recogni 98.0 3.7E-05 8.1E-10 55.4 7.6 84 60-155 82-171 (173)
400 PRK12727 flagellar biosynthesi 98.0 9.6E-05 2.1E-09 61.7 10.5 136 12-159 349-520 (559)
401 KOG3859 Septins (P-loop GTPase 98.0 2.1E-05 4.5E-10 59.8 5.8 115 12-132 41-189 (406)
402 KOG2423 Nucleolar GTPase [Gene 97.9 2.6E-06 5.6E-11 67.5 0.8 81 12-98 306-388 (572)
403 PRK11889 flhF flagellar biosyn 97.9 9.1E-05 2E-09 59.7 9.4 134 13-158 241-412 (436)
404 PRK13695 putative NTPase; Prov 97.9 0.00061 1.3E-08 49.2 13.1 79 82-175 94-172 (174)
405 COG3523 IcmF Type VI protein s 97.9 2.6E-05 5.6E-10 70.5 6.8 111 17-133 129-270 (1188)
406 KOG2485 Conserved ATP/GTP bind 97.9 1.2E-05 2.6E-10 61.9 3.9 60 11-71 141-206 (335)
407 PRK00771 signal recognition pa 97.9 0.00012 2.7E-09 60.2 10.0 134 12-158 94-267 (437)
408 KOG0469 Elongation factor 2 [T 97.9 3.7E-05 8E-10 63.0 6.3 115 11-131 17-162 (842)
409 PRK10867 signal recognition pa 97.9 7.9E-05 1.7E-09 61.2 8.4 87 60-158 183-275 (433)
410 PF00448 SRP54: SRP54-type pro 97.9 0.00011 2.4E-09 54.1 8.3 87 61-159 84-176 (196)
411 TIGR00959 ffh signal recogniti 97.9 9.7E-05 2.1E-09 60.6 8.5 87 60-158 182-274 (428)
412 cd02038 FleN-like FleN is a me 97.8 0.0001 2.2E-09 51.2 7.4 106 17-131 4-109 (139)
413 COG1419 FlhF Flagellar GTP-bin 97.8 0.00028 6E-09 56.8 10.6 132 13-157 203-372 (407)
414 PRK14721 flhF flagellar biosyn 97.8 0.00023 5E-09 58.2 10.3 135 12-159 190-362 (420)
415 PF02492 cobW: CobW/HypB/UreG, 97.8 5.7E-05 1.2E-09 54.8 6.1 69 60-135 84-157 (178)
416 KOG4273 Uncharacterized conser 97.8 0.00054 1.2E-08 51.5 10.7 159 14-180 5-226 (418)
417 PRK11537 putative GTP-binding 97.8 0.00072 1.6E-08 53.6 12.1 96 61-168 91-196 (318)
418 PRK05703 flhF flagellar biosyn 97.8 0.00051 1.1E-08 56.6 11.5 87 60-159 299-393 (424)
419 PRK12726 flagellar biosynthesi 97.7 0.00031 6.6E-09 56.5 9.3 88 60-159 285-378 (407)
420 PRK14723 flhF flagellar biosyn 97.7 0.00094 2E-08 58.4 12.4 136 14-159 186-359 (767)
421 cd02042 ParA ParA and ParB of 97.6 0.00043 9.4E-09 45.4 7.8 78 16-104 2-80 (104)
422 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00067 1.5E-08 43.4 8.6 69 16-97 2-71 (99)
423 PRK06995 flhF flagellar biosyn 97.6 0.0012 2.5E-08 55.1 11.0 134 14-159 257-427 (484)
424 TIGR02475 CobW cobalamin biosy 97.5 0.0009 2E-08 53.6 9.0 21 16-36 7-27 (341)
425 PF06858 NOG1: Nucleolar GTP-b 97.5 0.00032 6.9E-09 40.3 4.5 44 84-130 13-58 (58)
426 PRK12724 flagellar biosynthesi 97.5 0.0016 3.5E-08 53.1 10.2 134 13-159 223-395 (432)
427 cd00009 AAA The AAA+ (ATPases 97.4 0.00098 2.1E-08 45.9 7.6 25 14-38 20-44 (151)
428 PRK06731 flhF flagellar biosyn 97.4 0.0011 2.4E-08 51.2 8.3 132 14-158 76-246 (270)
429 PRK12723 flagellar biosynthesi 97.4 0.0017 3.6E-08 52.8 9.5 134 13-158 174-347 (388)
430 KOG0780 Signal recognition par 97.4 0.00027 5.8E-09 56.3 4.7 101 11-111 99-240 (483)
431 PF13207 AAA_17: AAA domain; P 97.4 0.00017 3.7E-09 48.6 3.3 22 15-36 1-22 (121)
432 KOG1534 Putative transcription 97.4 0.00021 4.6E-09 52.3 3.5 22 14-35 4-25 (273)
433 PRK14738 gmk guanylate kinase; 97.4 0.00024 5.1E-09 52.8 3.9 28 9-36 9-36 (206)
434 PRK14737 gmk guanylate kinase; 97.3 0.00015 3.3E-09 52.9 2.7 24 14-37 5-28 (186)
435 COG0563 Adk Adenylate kinase a 97.3 0.0002 4.2E-09 51.9 3.2 22 15-36 2-23 (178)
436 cd03111 CpaE_like This protein 97.3 0.0019 4.2E-08 42.6 7.7 100 19-128 6-106 (106)
437 PRK08118 topology modulation p 97.3 0.00021 4.5E-09 51.3 3.2 23 15-37 3-25 (167)
438 KOG1970 Checkpoint RAD17-RFC c 97.3 0.0017 3.8E-08 54.1 8.7 90 86-176 195-284 (634)
439 PRK07261 topology modulation p 97.3 0.00023 5E-09 51.3 3.2 22 15-36 2-23 (171)
440 PF13521 AAA_28: AAA domain; P 97.2 0.00021 4.5E-09 51.0 2.4 22 15-36 1-22 (163)
441 PF13671 AAA_33: AAA domain; P 97.2 0.00028 6.1E-09 48.9 3.0 21 16-36 2-22 (143)
442 PF05621 TniB: Bacterial TniB 97.2 0.0016 3.5E-08 50.6 7.3 108 7-128 55-189 (302)
443 cd04178 Nucleostemin_like Nucl 97.2 0.0013 2.7E-08 47.5 6.2 45 86-134 1-45 (172)
444 cd03110 Fer4_NifH_child This p 97.2 0.0046 1E-07 44.7 9.1 86 59-155 91-176 (179)
445 COG0194 Gmk Guanylate kinase [ 97.2 0.0002 4.3E-09 51.5 1.7 24 14-37 5-28 (191)
446 PF03215 Rad17: Rad17 cell cyc 97.1 0.0044 9.4E-08 52.4 9.5 87 87-175 134-229 (519)
447 cd02036 MinD Bacterial cell di 97.1 0.0088 1.9E-07 43.0 10.0 84 62-154 64-147 (179)
448 COG0541 Ffh Signal recognition 97.1 0.00023 5.1E-09 57.5 1.8 113 11-131 98-251 (451)
449 cd02019 NK Nucleoside/nucleoti 97.1 0.00056 1.2E-08 41.4 3.1 22 16-37 2-23 (69)
450 COG1126 GlnQ ABC-type polar am 97.1 0.00042 9.1E-09 51.1 2.8 25 155-179 163-187 (240)
451 COG4088 Predicted nucleotide k 97.1 0.0027 5.8E-08 46.6 6.6 119 16-149 4-138 (261)
452 PRK01889 GTPase RsgA; Reviewed 97.0 0.00082 1.8E-08 54.2 4.4 25 14-38 196-220 (356)
453 PF13555 AAA_29: P-loop contai 97.0 0.00074 1.6E-08 39.7 3.0 21 15-35 25-45 (62)
454 cd00071 GMPK Guanosine monopho 97.0 0.0008 1.7E-08 46.6 3.3 21 16-36 2-22 (137)
455 PF00005 ABC_tran: ABC transpo 97.0 0.00074 1.6E-08 46.5 3.2 24 15-38 13-36 (137)
456 PF00004 AAA: ATPase family as 97.0 0.00074 1.6E-08 45.9 3.1 22 16-37 1-22 (132)
457 PRK06217 hypothetical protein; 97.0 0.00071 1.5E-08 49.3 3.1 23 14-36 2-24 (183)
458 COG1116 TauB ABC-type nitrate/ 96.9 0.00074 1.6E-08 50.8 2.9 22 16-37 32-53 (248)
459 smart00382 AAA ATPases associa 96.9 0.00093 2E-08 45.6 3.3 28 14-41 3-30 (148)
460 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0037 8E-08 42.9 6.1 23 15-37 24-46 (133)
461 PF13238 AAA_18: AAA domain; P 96.9 0.00084 1.8E-08 45.5 2.9 21 16-36 1-21 (129)
462 PRK03839 putative kinase; Prov 96.9 0.00094 2E-08 48.4 3.2 22 15-36 2-23 (180)
463 COG1161 Predicted GTPases [Gen 96.9 0.0015 3.2E-08 52.0 4.5 94 67-169 16-110 (322)
464 TIGR03263 guanyl_kin guanylate 96.9 0.0012 2.7E-08 47.7 3.8 23 15-37 3-25 (180)
465 COG1136 SalX ABC-type antimicr 96.9 0.00088 1.9E-08 50.1 3.0 22 15-36 33-54 (226)
466 PRK10078 ribose 1,5-bisphospho 96.9 0.001 2.2E-08 48.5 3.2 23 15-37 4-26 (186)
467 TIGR00235 udk uridine kinase. 96.9 0.0014 3E-08 48.7 3.9 26 11-36 4-29 (207)
468 PRK14530 adenylate kinase; Pro 96.9 0.0011 2.3E-08 49.7 3.3 22 15-36 5-26 (215)
469 PF04665 Pox_A32: Poxvirus A32 96.9 0.00097 2.1E-08 50.4 3.0 29 10-38 10-38 (241)
470 PRK04195 replication factor C 96.9 0.012 2.5E-07 49.6 9.8 24 14-37 40-63 (482)
471 PF03205 MobB: Molybdopterin g 96.8 0.0013 2.8E-08 45.7 3.3 23 15-37 2-24 (140)
472 TIGR02322 phosphon_PhnN phosph 96.8 0.0011 2.4E-08 48.0 3.1 22 15-36 3-24 (179)
473 PF07728 AAA_5: AAA domain (dy 96.8 0.0013 2.8E-08 45.5 3.3 23 15-37 1-23 (139)
474 cd02023 UMPK Uridine monophosp 96.8 0.0012 2.6E-08 48.7 3.0 22 16-37 2-23 (198)
475 TIGR00174 miaA tRNA isopenteny 96.8 0.0068 1.5E-07 47.3 7.2 21 16-36 2-22 (287)
476 PRK13949 shikimate kinase; Pro 96.8 0.0014 3.1E-08 47.1 3.2 22 15-36 3-24 (169)
477 cd01130 VirB11-like_ATPase Typ 96.7 0.0015 3.4E-08 47.6 3.3 25 13-37 25-49 (186)
478 cd01131 PilT Pilus retraction 96.7 0.0071 1.5E-07 44.6 6.7 22 16-37 4-25 (198)
479 PRK05480 uridine/cytidine kina 96.7 0.0017 3.6E-08 48.3 3.3 25 12-36 5-29 (209)
480 cd01120 RecA-like_NTPases RecA 96.7 0.01 2.2E-07 41.7 7.3 22 16-37 2-23 (165)
481 PHA00729 NTP-binding motif con 96.7 0.0019 4.1E-08 48.4 3.5 23 14-36 18-40 (226)
482 cd01129 PulE-GspE PulE/GspE Th 96.7 0.011 2.5E-07 45.6 8.0 84 15-101 82-165 (264)
483 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0015 3.3E-08 47.5 2.9 21 15-35 5-25 (188)
484 COG3638 ABC-type phosphate/pho 96.7 0.0015 3.2E-08 48.9 2.8 21 15-35 32-52 (258)
485 PF11111 CENP-M: Centromere pr 96.7 0.11 2.4E-06 37.1 11.9 147 5-176 7-153 (176)
486 KOG2743 Cobalamin synthesis pr 96.7 0.0074 1.6E-07 46.8 6.4 74 60-137 145-229 (391)
487 cd00820 PEPCK_HprK Phosphoenol 96.6 0.0018 4E-08 42.6 2.8 21 14-34 16-36 (107)
488 PRK14532 adenylate kinase; Pro 96.6 0.0018 3.9E-08 47.3 3.1 22 15-36 2-23 (188)
489 COG1117 PstB ABC-type phosphat 96.6 0.0016 3.6E-08 48.0 2.8 18 16-33 36-53 (253)
490 cd02025 PanK Pantothenate kina 96.6 0.0017 3.6E-08 48.8 2.9 21 16-36 2-22 (220)
491 PRK08233 hypothetical protein; 96.6 0.0021 4.5E-08 46.5 3.3 23 14-36 4-26 (182)
492 PRK10646 ADP-binding protein; 96.6 0.013 2.7E-07 41.3 7.0 23 15-37 30-52 (153)
493 PRK00625 shikimate kinase; Pro 96.6 0.002 4.3E-08 46.5 3.1 22 15-36 2-23 (173)
494 COG3840 ThiQ ABC-type thiamine 96.6 0.0021 4.6E-08 46.3 3.1 25 14-38 26-50 (231)
495 cd01428 ADK Adenylate kinase ( 96.6 0.0017 3.7E-08 47.5 2.7 22 15-36 1-22 (194)
496 PRK10751 molybdopterin-guanine 96.6 0.002 4.3E-08 46.4 2.9 23 14-36 7-29 (173)
497 PF05879 RHD3: Root hair defec 96.6 0.0052 1.1E-07 54.2 6.0 23 19-41 1-23 (742)
498 PRK02496 adk adenylate kinase; 96.6 0.0023 4.9E-08 46.6 3.3 23 14-36 2-24 (184)
499 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0021 4.6E-08 46.5 3.0 24 14-37 26-49 (177)
500 KOG2423 Nucleolar GTPase [Gene 96.6 0.017 3.7E-07 46.5 8.2 122 83-209 212-333 (572)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-42 Score=244.65 Aligned_cols=200 Identities=45% Similarity=0.759 Sum_probs=179.3
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcccc
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAH 86 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (210)
+..+|.+||+++|+.|||||+|+.||..+.|.+ +..|+|.++....+.++++.+.+++|||+|+++|+.....+|+++|
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 445799999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCe-EEEecccCCcCHH
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVK 165 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~ 165 (210)
++|+|||+++..+|+.+. .|+..+.++. ..++|.++|+||+|+.+.+.++.++++.++..++.+ ++++||+++.|++
T Consensus 84 Gii~vyDiT~~~SF~~v~-~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVK-RWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred eEEEEEEcccHHHhhhHH-HHHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence 999999999999999999 8999999888 677899999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHccchhhhcccccccccccchhhhhhhcCCCCCCC
Q 028315 166 QCFKDLLYKILEVPSLLEQGSAVVKNQILKQKEVQESARGGNCCS 210 (210)
Q Consensus 166 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 210 (210)
+.|..+...+..++......+....+...-.. .+..+.++.||+
T Consensus 162 ~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~-~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 162 DAFLTLAKELKQRKGLHVKWSTASLESVQLKG-TPVKKSNGGCCE 205 (205)
T ss_pred HHHHHHHHHHHHhcccCCCCCcCCCCceeeCC-CCcccccCCCCC
Confidence 99999999999888877766542233322222 455566666885
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-41 Score=235.75 Aligned_cols=196 Identities=40% Similarity=0.648 Sum_probs=172.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
.+++||+++|..+||||||+.||..+.|.+ ..+|+|.-+.+..+.++...+.+.+|||+|+++|.++.+.||++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 568999999999999999999999999999 6999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+|||+++.+||..+. .|...+++.. .++.-+.+||||+|+...+.+..+++..++...+..+|++||++|.|++++|.
T Consensus 83 vvYDit~~~SF~~aK-~WvkeL~~~~-~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~ 160 (200)
T KOG0092|consen 83 VVYDITDEESFEKAK-NWVKELQRQA-SPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQ 160 (200)
T ss_pred EEEecccHHHHHHHH-HHHHHHHhhC-CCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHH
Confidence 999999999999999 8999998887 37777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccchhhhcccccc-cccccchhhhhhhcCCCCCCC
Q 028315 170 DLLYKILEVPSLLEQGSAVV-KNQILKQKEVQESARGGNCCS 210 (210)
Q Consensus 170 ~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~c~~ 210 (210)
.|.+.+.............. ....++..+ ++.+...|||
T Consensus 161 ~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~--~~~~~~~~C~ 200 (200)
T KOG0092|consen 161 AIAEKLPCSDPQERQGLPNRRQGVDLNSNQ--EPARPSGCCA 200 (200)
T ss_pred HHHHhccCccccccccccccccceecccCC--CCcCcCCcCC
Confidence 99999998887666522211 111222222 5666667775
No 3
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-40 Score=232.91 Aligned_cols=169 Identities=36% Similarity=0.607 Sum_probs=158.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
.+.+||+|+|+.+|||||||+|++...|.. +.+|+|.++...++.+.++.+++++|||+|+|+|+.+.+.|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 456999999999999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+|||+++..+|+... .|+.-+.......++-+++|+||.||.+.+++..++....++++++.|+++||+.|.||.++|.
T Consensus 100 iVyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 100 IVYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred EEEeccccchHHHHH-HHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence 999999999999999 7888887776555688899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccch
Q 028315 170 DLLYKILEVPS 180 (210)
Q Consensus 170 ~i~~~~~~~~~ 180 (210)
.|...+.....
T Consensus 179 rIaa~l~~~~~ 189 (221)
T KOG0094|consen 179 RIAAALPGMEV 189 (221)
T ss_pred HHHHhccCccc
Confidence 98877776544
No 4
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.9e-40 Score=223.40 Aligned_cols=202 Identities=60% Similarity=1.045 Sum_probs=180.2
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcccc
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAH 86 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (210)
+.....+||+++|.+|+|||+|+.+|....|.+ ...|+|.++.++.+.+++..+++.+|||+|+++|+.+...||+.+.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 556789999999999999999999999999988 5555999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHH
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 166 (210)
++|+|||++.+++|..+. .|+..+..++.++++-.++|+||+|....+.++.++...|++.+++.++++||++..||+.
T Consensus 86 GiIlVYDVT~Rdtf~kLd-~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLD-IWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQC 164 (209)
T ss_pred eeEEEEEccchhhHHhHH-HHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence 999999999999999996 9999999999888888999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHccchhhhcccccccccccchhhhhhhcCCCCCCC
Q 028315 167 CFKDLLYKILEVPSLLEQGSAVVKNQILKQKEVQESARGGNCCS 210 (210)
Q Consensus 167 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 210 (210)
.|+.++..+++.+...++.....+..+......+-.-....|||
T Consensus 165 ~FeelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~~~~g~~Cs 208 (209)
T KOG0080|consen 165 CFEELVEKIIETPSLWEEGNSSAGLDIASDPDGEASAHQGGCCS 208 (209)
T ss_pred HHHHHHHHHhcCcchhhccCCccccccccCCCcccccccCCccC
Confidence 99999999999999998866655555554333333333344554
No 5
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-39 Score=230.13 Aligned_cols=176 Identities=48% Similarity=0.804 Sum_probs=166.1
Q ss_pred CCCCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhh
Q 028315 4 KVGNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYY 82 (210)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 82 (210)
.+..++.++.+||+++|+++||||+|+.+|....|.. +..|+|.++....+.+++..+.+++|||+|+++|..+...|+
T Consensus 3 ~~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYy 82 (207)
T KOG0078|consen 3 AMAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYY 82 (207)
T ss_pred ccccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHH
Confidence 3455678999999999999999999999999999887 889999999999999999999999999999999999999999
Q ss_pred ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCc
Q 028315 83 RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTE 162 (210)
Q Consensus 83 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 162 (210)
+.|+++++|||+++..+|+++. .|+..+..+. +.++|.++||||+|+...+++..+.++.++.++|++++|+||++|.
T Consensus 83 rgA~gi~LvyDitne~Sfeni~-~W~~~I~e~a-~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~ 160 (207)
T KOG0078|consen 83 RGAMGILLVYDITNEKSFENIR-NWIKNIDEHA-SDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNF 160 (207)
T ss_pred hhcCeeEEEEEccchHHHHHHH-HHHHHHHhhC-CCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCC
Confidence 9999999999999999999999 6999999888 5689999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccchh
Q 028315 163 DVKQCFKDLLYKILEVPSL 181 (210)
Q Consensus 163 ~i~~l~~~i~~~~~~~~~~ 181 (210)
||++.|..|.+.+..+...
T Consensus 161 NI~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 161 NIEEAFLSLARDILQKLED 179 (207)
T ss_pred CHHHHHHHHHHHHHhhcch
Confidence 9999999999999975544
No 6
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.7e-38 Score=234.30 Aligned_cols=195 Identities=32% Similarity=0.554 Sum_probs=173.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEEC-CeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVG-GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
+||+++|++|||||||+++|.++.+.. +.++.+.++....+.++ +..+.+.+|||||++.+..++..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999988876 78888888877777777 7789999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhc---cCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcC-CeEEEecccCCcCHHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYS---TNQDCVKILVGNKVDRDSERAVTREEGMILAQEHK-CLFLECSAKNTEDVKQC 167 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~l 167 (210)
||++++.+|+.+. .|...+.... ...+.|+++|+||+|+.+.+.+..+++..++...+ ..++++||++|.|++++
T Consensus 81 ~D~t~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 81 FDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA 159 (201)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence 9999999999998 7777665432 13578999999999997667788888999999888 68999999999999999
Q ss_pred HHHHHHHHHccchhhhcccccccccccchhhhhhhcCCCCCC
Q 028315 168 FKDLLYKILEVPSLLEQGSAVVKNQILKQKEVQESARGGNCC 209 (210)
Q Consensus 168 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 209 (210)
|.+|.+.+.+..+.........+..+...++..+..+.++||
T Consensus 160 f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 160 MRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence 999999999998888888888888888888888888899998
No 7
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=4.3e-37 Score=229.46 Aligned_cols=205 Identities=77% Similarity=1.184 Sum_probs=180.6
Q ss_pred CCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccc
Q 028315 6 GNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGA 85 (210)
Q Consensus 6 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (210)
.+......+||+|+|++|||||||+++|.+..+..+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus 7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 34445678999999999999999999999998877888888888878888888889999999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHH
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 165 (210)
|++++|||++++++|+.+...|...+.......+.|+++|+||+|+...+.+..++...++...++.++++||+++.|++
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVE 166 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999987788877765544678999999999998777777788888888889999999999999999
Q ss_pred HHHHHHHHHHHccchhhhcccccccccccchhhhhhhcCCCCCCC
Q 028315 166 QCFKDLLYKILEVPSLLEQGSAVVKNQILKQKEVQESARGGNCCS 210 (210)
Q Consensus 166 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 210 (210)
++|.+|.+.+.+.+...++.....+++.++.....++.-+..|||
T Consensus 167 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
T PLN03118 167 QCFEELALKIMEVPSLLEEGSTAVKRNILKQKPEHQPPPNGGCCS 211 (211)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccccccccccccCCCCcCCCCC
Confidence 999999999999998888888888888888877777766667775
No 8
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=216.07 Aligned_cols=171 Identities=33% Similarity=0.603 Sum_probs=156.0
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
+...+||+++|++|+|||+|+++|.+.+|.. +..|++.++..+.+.++++.+.+++|||+|+++|.++...+|+++|++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 3456999999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccC---CCCcEEEEEeCCCCCCC--CccCHHHHHHHHHHc-CCeEEEecccCCc
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTN---QDCVKILVGNKVDRDSE--RAVTREEGMILAQEH-KCLFLECSAKNTE 162 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~-~~~~~~~sa~~~~ 162 (210)
++|||++++.+|+.+. .|+..+..+... ..-|+||+|||+|+... +.++...++.++... +++||++|||...
T Consensus 86 vlvydv~~~~Sfe~L~-~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLE-NWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEeecCChhhhccHH-HHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999 888888777642 34699999999999753 789999999999876 5799999999999
Q ss_pred CHHHHHHHHHHHHHccchh
Q 028315 163 DVKQCFKDLLYKILEVPSL 181 (210)
Q Consensus 163 ~i~~l~~~i~~~~~~~~~~ 181 (210)
||.+.|..+.+.++.....
T Consensus 165 NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDR 183 (210)
T ss_pred cHHHHHHHHHHHHHhccch
Confidence 9999999999998877654
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.3e-36 Score=222.34 Aligned_cols=168 Identities=39% Similarity=0.654 Sum_probs=152.6
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
.++.+||+++|..|||||||+++|..+.+.. +.++.+.++....+.+++..+.+++|||+|++.|..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 4578999999999999999999999988766 667888888777788899999999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
|+|||++++.+|+.+. .|+..+.... ++.|++||+||.|+...+.+..++++.++...++++++|||++|.||+++|
T Consensus 83 llVfD~t~~~Sf~~~~-~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 83 ILVYDITNRWSFDGID-RWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF 159 (189)
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 9999999999999998 7888886654 579999999999998888889999999999999999999999999999999
Q ss_pred HHHHHHHHccch
Q 028315 169 KDLLYKILEVPS 180 (210)
Q Consensus 169 ~~i~~~~~~~~~ 180 (210)
.++.+.+.....
T Consensus 160 ~~l~~~i~~~~~ 171 (189)
T cd04121 160 TELARIVLMRHG 171 (189)
T ss_pred HHHHHHHHHhcC
Confidence 999998876555
No 10
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-37 Score=212.91 Aligned_cols=169 Identities=46% Similarity=0.811 Sum_probs=158.6
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
..+.+|++++|+.|||||+|+.+|+...|.. +..|+|.++....+++++..+++++|||+|++.|.+....+|+.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 4678999999999999999999999999988 788999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
|+|||++.+++|..+. .|+..+.... ..+.-+++++||+|+...++++.++.+.|++++|..++++||+++.||+++|
T Consensus 83 lLVydit~r~sF~hL~-~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLT-SWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred EEEEEccchhhHHHHH-HHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence 9999999999999999 7888887765 5788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccch
Q 028315 169 KDLLYKILEVPS 180 (210)
Q Consensus 169 ~~i~~~~~~~~~ 180 (210)
......+++.-+
T Consensus 161 ~nta~~Iy~~~q 172 (216)
T KOG0098|consen 161 INTAKEIYRKIQ 172 (216)
T ss_pred HHHHHHHHHHHH
Confidence 999888776544
No 11
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=3.3e-36 Score=222.17 Aligned_cols=163 Identities=43% Similarity=0.796 Sum_probs=147.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+.|+++|..|||||||+++|..+.|.. +.+|.+.++....+.+++..+.+++|||+|++.|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 358999999999999999999999877 7788888888888888999999999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHc-CCeEEEecccCCcCHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEH-KCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~l~~~i 171 (210)
|++++.+|+.+. .|+..+.... ..+.|+++|+||+|+...+.+..++++.++... ++.+++|||++|.||+++|.++
T Consensus 81 Dvtd~~Sf~~l~-~w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 81 DITKKETFDDLP-KWMKMIDKYA-SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999998 7888776554 467999999999999888888888888888775 7889999999999999999999
Q ss_pred HHHHHcc
Q 028315 172 LYKILEV 178 (210)
Q Consensus 172 ~~~~~~~ 178 (210)
++.+...
T Consensus 159 ~~~~~~~ 165 (202)
T cd04120 159 VDDILKK 165 (202)
T ss_pred HHHHHHh
Confidence 9988764
No 12
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-36 Score=215.76 Aligned_cols=177 Identities=45% Similarity=0.734 Sum_probs=165.5
Q ss_pred CCCCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhh
Q 028315 4 KVGNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYY 82 (210)
Q Consensus 4 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 82 (210)
.-.+...+|.+||+++|++++|||-|+.|+....|.. ...|+|.++.+..+.+++..+..+||||+|+++|+.....+|
T Consensus 5 ~~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYY 84 (222)
T KOG0087|consen 5 RDKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYY 84 (222)
T ss_pred cCCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhh
Confidence 3445677899999999999999999999999999988 889999999999999999999999999999999999999999
Q ss_pred ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCc
Q 028315 83 RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTE 162 (210)
Q Consensus 83 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 162 (210)
+.+.++++|||++...+|+.+. .|+..++.+. ..++++++|+||+||...+.+..+++..+++..+..++++||.++.
T Consensus 85 rgAvGAllVYDITr~~Tfenv~-rWL~ELRdha-d~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~t 162 (222)
T KOG0087|consen 85 RGAVGALLVYDITRRQTFENVE-RWLKELRDHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDAT 162 (222)
T ss_pred cccceeEEEEechhHHHHHHHH-HHHHHHHhcC-CCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccc
Confidence 9999999999999999999999 8999998887 6789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccchhh
Q 028315 163 DVKQCFKDLLYKILEVPSLL 182 (210)
Q Consensus 163 ~i~~l~~~i~~~~~~~~~~~ 182 (210)
|+++.|..++..+...-...
T Consensus 163 NVe~aF~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 163 NVEKAFERVLTEIYKIVSKK 182 (222)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887665544
No 13
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.6e-35 Score=221.44 Aligned_cols=169 Identities=46% Similarity=0.769 Sum_probs=152.3
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
..++.+||+++|++|||||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 35688999999999999999999999988765 77888988888888888989999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
+++|||++++.+|+.+. .|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++
T Consensus 88 ~ilv~d~~~~~s~~~~~-~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQ-RWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKA 165 (216)
T ss_pred EEEEEECCChHHHHHHH-HHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999988 7887776654 457899999999999887888888888888888999999999999999999
Q ss_pred HHHHHHHHHccc
Q 028315 168 FKDLLYKILEVP 179 (210)
Q Consensus 168 ~~~i~~~~~~~~ 179 (210)
|+++++.+.+..
T Consensus 166 f~~l~~~i~~~~ 177 (216)
T PLN03110 166 FQTILLEIYHII 177 (216)
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 14
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=218.00 Aligned_cols=183 Identities=32% Similarity=0.536 Sum_probs=153.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
..+||+++|++|+|||||++++.++.+.. +.++.+..+ .....+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 45999999999999999999999988765 667766555 4556788888999999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKD 170 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~ 170 (210)
|||++++.+|+.+. .|...+.......+.|+++|+||.|+...+.+..+++..+...++++++++||++|.|++++|.+
T Consensus 83 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 83 VYSITSRSSFEEIA-SFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 99999999999998 56666655543568899999999999777777777888888888899999999999999999999
Q ss_pred HHHHHHccchhhhcccccccccccchhhhhhhcCCCCCC
Q 028315 171 LLYKILEVPSLLEQGSAVVKNQILKQKEVQESARGGNCC 209 (210)
Q Consensus 171 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 209 (210)
+++.+....+ + ..+.+.+..++++||
T Consensus 162 l~~~l~~~~~---~----------~~~~~~~~~~~~~~~ 187 (189)
T PTZ00369 162 LVREIRKYLK---E----------DMPSQKQKKKGGLCL 187 (189)
T ss_pred HHHHHHHHhh---c----------cchhhhhhccCCeee
Confidence 9998864322 1 245556666778887
No 15
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.3e-35 Score=216.46 Aligned_cols=185 Identities=40% Similarity=0.676 Sum_probs=157.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|||||||+++|.++.+.. +.++.+.++....+.+++..+.+.+|||||.+.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999999877 7888888888777888888899999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|++++.+|..+. .|+..+.... ....|+++|+||.|+.+.+.+..+++..++...+++++++||++|.|++++|.+++
T Consensus 81 d~~~~~s~~~i~-~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~ 158 (188)
T cd04125 81 DVTDQESFENLK-FWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV 158 (188)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999998 5887776654 34689999999999987777888888888888889999999999999999999999
Q ss_pred HHHHccchhhhcccccccccccchhhhhhhcCCCCCCC
Q 028315 173 YKILEVPSLLEQGSAVVKNQILKQKEVQESARGGNCCS 210 (210)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 210 (210)
+.+..+....+. ...+.+++.+++.||+
T Consensus 159 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 186 (188)
T cd04125 159 KLIIKRLEEQEL----------SPKNIKQQFKKKNNCF 186 (188)
T ss_pred HHHHHHhhcCcC----------CccccccccccccCcc
Confidence 998754433322 2344555556666664
No 16
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=3.8e-35 Score=217.00 Aligned_cols=169 Identities=46% Similarity=0.742 Sum_probs=149.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
++.+||+++|++|||||||+++|.+..+.. +.++.+.++....+.+.+..+.+.+|||||++.+..++..+++++|+++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 467999999999999999999999988866 7788888887777778888889999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+|||++++.+|+.+. .|+..+.... ...|++||+||+|+.+.+.+..++...++...+.+++++||++|.||+++|+
T Consensus 84 lv~D~~~~~s~~~~~-~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 84 VVYDVTNGESFVNVK-RWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFN 160 (199)
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence 999999999999998 6777776543 5789999999999987777788888888888899999999999999999999
Q ss_pred HHHHHHHccchhh
Q 028315 170 DLLYKILEVPSLL 182 (210)
Q Consensus 170 ~i~~~~~~~~~~~ 182 (210)
+|.+.+.......
T Consensus 161 ~l~~~~~~~~~~~ 173 (199)
T cd04110 161 CITELVLRAKKDN 173 (199)
T ss_pred HHHHHHHHhhhcc
Confidence 9999998665544
No 17
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.7e-35 Score=219.49 Aligned_cols=167 Identities=25% Similarity=0.486 Sum_probs=147.0
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
.....+||+++|++|||||+|+.+|..+.|.. +.|+.+..+. ..+.+++..+.+.||||+|++.|..++..+++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 33468999999999999999999999998877 7788877664 456788999999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CCccCHHHHHHHHHHcCC-eEE
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS------------ERAVTREEGMILAQEHKC-LFL 154 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~ 154 (210)
+++|||++++.+|+.+...|...+.... ++.|+++|+||+|+.. .+.+..++++.++..+++ .|+
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~ 165 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYL 165 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEE
Confidence 9999999999999986448888887654 4789999999999864 356888999999999998 699
Q ss_pred EecccCCc-CHHHHHHHHHHHHHcc
Q 028315 155 ECSAKNTE-DVKQCFKDLLYKILEV 178 (210)
Q Consensus 155 ~~sa~~~~-~i~~l~~~i~~~~~~~ 178 (210)
+|||++|. ||+++|..+++.+.+.
T Consensus 166 EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 166 ECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred EccCCcCCcCHHHHHHHHHHHHHHh
Confidence 99999997 8999999999988764
No 18
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.8e-35 Score=217.33 Aligned_cols=185 Identities=31% Similarity=0.506 Sum_probs=149.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEe
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYD 93 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (210)
||+++|.+|||||||+++|..+.+.. +.++.+..+ .....+++..+.+.+|||||++.|..++..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 58999999999999999999888876 556665443 3445678888899999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHH
Q 028315 94 VTRRETFTNLSSVWAKEVELYST--NQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i 171 (210)
++++.+|+.+. .|...+..... ..+.|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|.++
T Consensus 80 ~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l 158 (190)
T cd04144 80 ITSRSTFERVE-RFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL 158 (190)
T ss_pred CCCHHHHHHHH-HHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 99999999988 56665544332 2578999999999998777888888888888889999999999999999999999
Q ss_pred HHHHHccchhhhcccccccccccchhhhhhhcCCCCCCC
Q 028315 172 LYKILEVPSLLEQGSAVVKNQILKQKEVQESARGGNCCS 210 (210)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 210 (210)
++.+......-. .....+..++.++++|||
T Consensus 159 ~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 159 VRALRQQRQGGQ---------GPKGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHHhhcccC---------CCcCCCCCcccccccCce
Confidence 998875444321 123444455555556664
No 19
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4e-35 Score=215.66 Aligned_cols=189 Identities=38% Similarity=0.686 Sum_probs=157.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
+||+++|++|||||||++++.++.+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988753 667777777766678888899999999999999998889999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i 171 (210)
+|++++.+++.+. .|...+.... ..+.|+++|+||+|+...+.+..++...+...++++|+++||++|.|++++|.+|
T Consensus 81 ~D~~~~~s~~~~~-~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l 158 (191)
T cd04112 81 YDITNKASFDNIR-AWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAV 158 (191)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999998 6777776654 4578999999999997777777888888888889999999999999999999999
Q ss_pred HHHHHccchhhhcccccccccccchhhhhhhcCCCCCC
Q 028315 172 LYKILEVPSLLEQGSAVVKNQILKQKEVQESARGGNCC 209 (210)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 209 (210)
.+.+.+.+..++...... -..-..+.++.+.||
T Consensus 159 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 191 (191)
T cd04112 159 AKELKHRKYEQPDEGKFK-----ISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHHHhccccCCCCcEE-----eccccCcccccCCCC
Confidence 999998876544433222 222234445566776
No 20
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2e-36 Score=203.16 Aligned_cols=165 Identities=46% Similarity=0.760 Sum_probs=156.2
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.-++.+|+|++|+|||+|+.+|....|+. |..|+|.++...++.+++..+.+++|||+|++.|+.+...+++..+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 34678999999999999999999999988 88999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKD 170 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~ 170 (210)
|||+++.++|.+.. .|++.++..+ ..+|-++|+||.|.++.+.+..++++.++...|+.+|++||+...|++.+|.-
T Consensus 87 VYDVTn~ESF~Nv~-rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 87 VYDVTNGESFNNVK-RWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred EEECcchhhhHhHH-HHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 99999999999999 8999998877 58899999999999998999999999999999999999999999999999999
Q ss_pred HHHHHHccc
Q 028315 171 LLYKILEVP 179 (210)
Q Consensus 171 i~~~~~~~~ 179 (210)
|.+...+..
T Consensus 164 it~qvl~~k 172 (198)
T KOG0079|consen 164 ITKQVLQAK 172 (198)
T ss_pred HHHHHHHHH
Confidence 999888766
No 21
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=5.3e-35 Score=218.01 Aligned_cols=166 Identities=33% Similarity=0.531 Sum_probs=141.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEe
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYD 93 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (210)
+||+++|.+|||||||+++|..+.+..+.++.+.++..... ..+.+.+|||+|++.|..++..+++++|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 58999999999999999999999987777787776654432 46789999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-------------------CCccCHHHHHHHHHHcC----
Q 028315 94 VTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS-------------------ERAVTREEGMILAQEHK---- 150 (210)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~---- 150 (210)
++++.+|+.+..+|...... . ..+.|+++|+||+|+.. .+.+..+++..+++..+
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~-~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~ 154 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDT-A-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM 154 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHh-c-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence 99999999998666655432 2 35789999999999975 57788899999998876
Q ss_pred ----------CeEEEecccCCcCHHHHHHHHHHHHHccchhhhcc
Q 028315 151 ----------CLFLECSAKNTEDVKQCFKDLLYKILEVPSLLEQG 185 (210)
Q Consensus 151 ----------~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~ 185 (210)
++|++|||++|.||+++|.++++.+..........
T Consensus 155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~ 199 (220)
T cd04126 155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAE 199 (220)
T ss_pred ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 68999999999999999999999988655555443
No 22
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=8.3e-35 Score=211.78 Aligned_cols=163 Identities=23% Similarity=0.518 Sum_probs=144.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
...+||+++|++|||||||++++..+.+.. +.||.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 457899999999999999999999999877 7788876554 56778999999999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CCccCHHHHHHHHHHcCC-eEEEe
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS------------ERAVTREEGMILAQEHKC-LFLEC 156 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 156 (210)
+|||++++.+|+.+...|...+.... ++.|+++|+||+|+.+ .+.++.++++.+++..++ +|++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 99999999999998558988887654 5789999999999864 346889999999999996 89999
Q ss_pred cccCCcC-HHHHHHHHHHHHH
Q 028315 157 SAKNTED-VKQCFKDLLYKIL 176 (210)
Q Consensus 157 sa~~~~~-i~~l~~~i~~~~~ 176 (210)
||++|.| |+++|..+++.++
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999998654
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1e-34 Score=208.94 Aligned_cols=163 Identities=46% Similarity=0.788 Sum_probs=146.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
.+||+++|++|+|||||++++.++.+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999999998877 667788888777778888899999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i 171 (210)
||++++.+|+.+. .|...+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|.++
T Consensus 82 ~d~~~~~s~~~~~-~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 82 YDITRRSTYNHLS-SWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 9999999999998 6777665543 4578999999999998888888889999999889999999999999999999999
Q ss_pred HHHHHc
Q 028315 172 LYKILE 177 (210)
Q Consensus 172 ~~~~~~ 177 (210)
++.+.+
T Consensus 160 ~~~~~~ 165 (166)
T cd04122 160 AKKIYQ 165 (166)
T ss_pred HHHHhh
Confidence 988764
No 24
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.1e-34 Score=216.20 Aligned_cols=170 Identities=42% Similarity=0.698 Sum_probs=148.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEE-CCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTV-GGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
+.+||+++|++|||||||+++|.++.+.. +.++.+.++....+.+ ++..+.+++|||||++.+..++..+++++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 46899999999999999999999988877 6678887877776666 466789999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+|||++++.+|+.+. .|...+.........|++||+||.|+...+.+..++...++..++++++++||++|.|++++|+
T Consensus 81 lv~D~~~~~Sf~~l~-~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~ 159 (211)
T cd04111 81 LVFDITNRESFEHVH-DWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFE 159 (211)
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999998 6777665554345678899999999988778888889999999999999999999999999999
Q ss_pred HHHHHHHccchhh
Q 028315 170 DLLYKILEVPSLL 182 (210)
Q Consensus 170 ~i~~~~~~~~~~~ 182 (210)
+|.+.+.+.....
T Consensus 160 ~l~~~~~~~~~~~ 172 (211)
T cd04111 160 LLTQEIYERIKRG 172 (211)
T ss_pred HHHHHHHHHhhcC
Confidence 9999888665433
No 25
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1e-34 Score=210.06 Aligned_cols=160 Identities=31% Similarity=0.588 Sum_probs=142.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|+|||+|+.++..+.|.. +.+|.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 699999999999999999999999976 778887665 455678888999999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC----------ccCHHHHHHHHHHcCC-eEEEecccCC
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER----------AVTREEGMILAQEHKC-LFLECSAKNT 161 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~sa~~~ 161 (210)
|++++.+|+.+...|...+.... .+.|+++|+||+|+.+.+ .+..+++..++...+. .+++|||++|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~ 158 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ 158 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence 99999999998547888876554 479999999999996543 4788899999999988 5999999999
Q ss_pred cCHHHHHHHHHHHHH
Q 028315 162 EDVKQCFKDLLYKIL 176 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~ 176 (210)
.||+++|..+.+.+.
T Consensus 159 ~nV~~~F~~~~~~~~ 173 (176)
T cd04133 159 QNVKAVFDAAIKVVL 173 (176)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999998764
No 26
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=8.7e-35 Score=210.37 Aligned_cols=163 Identities=37% Similarity=0.579 Sum_probs=144.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
.+||+++|.+|||||||++++..+.+.. +.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 4899999999999999999999999876 667776444 44567788889999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i 171 (210)
||++++.+|+.+. .|...+.......+.|+++|+||+|+...+.++.++++.+++..++++++|||++|.||+++|+++
T Consensus 81 ~d~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 81 YSVTDRHSFQEAS-EFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred EECCchhHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 9999999999998 577777665435679999999999998778888889999998899999999999999999999999
Q ss_pred HHHHHc
Q 028315 172 LYKILE 177 (210)
Q Consensus 172 ~~~~~~ 177 (210)
++.+.+
T Consensus 160 ~~~~~~ 165 (172)
T cd04141 160 VREIRR 165 (172)
T ss_pred HHHHHH
Confidence 998875
No 27
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.9e-34 Score=207.75 Aligned_cols=165 Identities=50% Similarity=0.832 Sum_probs=148.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
++.+||+++|++|+|||||++++.+..+.. +.++.+.++....+...+..+.+++|||||++.+...+..+++++|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 467999999999999999999999998877 7888888887777788888899999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+|||++++.+|+.+. .|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++..++.+++++||++|.|++++|.
T Consensus 81 ~v~d~~~~~s~~~~~-~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 158 (167)
T cd01867 81 LVYDITDEKSFENIR-NWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFF 158 (167)
T ss_pred EEEECcCHHHHHhHH-HHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999998 6888776654 46789999999999987777788888888888899999999999999999999
Q ss_pred HHHHHHHc
Q 028315 170 DLLYKILE 177 (210)
Q Consensus 170 ~i~~~~~~ 177 (210)
++.+++..
T Consensus 159 ~i~~~~~~ 166 (167)
T cd01867 159 TLAKDIKK 166 (167)
T ss_pred HHHHHHHh
Confidence 99998864
No 28
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2.9e-34 Score=214.68 Aligned_cols=165 Identities=34% Similarity=0.518 Sum_probs=146.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECC-eEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGG-KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
+||+++|++|||||||+++|.+..+.. +.++.+.+++...+.+++ ..+.+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999988877 788888888877777764 578999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYST--NQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
||++++.+|+.+. .|...+..... ..+.|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+
T Consensus 81 ~D~t~~~s~~~~~-~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 81 YDVTNSQSFENLE-DWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 9999999999998 68887766542 24568999999999987778888888899998999999999999999999999
Q ss_pred HHHHHHHccc
Q 028315 170 DLLYKILEVP 179 (210)
Q Consensus 170 ~i~~~~~~~~ 179 (210)
++.+.+....
T Consensus 160 ~l~~~l~~~~ 169 (215)
T cd04109 160 QLAAELLGVD 169 (215)
T ss_pred HHHHHHHhcc
Confidence 9999988653
No 29
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.5e-34 Score=209.54 Aligned_cols=166 Identities=35% Similarity=0.640 Sum_probs=146.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEEC----------CeEEEEEEEeCCCCcccccchh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVG----------GKRLKLTIWDTAGQERFGTLTS 79 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~l~Dt~G~~~~~~~~~ 79 (210)
++.+||+++|++|||||||++++.++.+.. +.++.+.++....+.+. +..+.+.+|||||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 477999999999999999999999988877 77888877766655543 4568999999999999999999
Q ss_pred hhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEeccc
Q 028315 80 SYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 159 (210)
.+++++|++++|||++++.+|..+. .|+..+.......+.|+++|+||+|+.+.+.+..++...++..++++++++||+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVR-NWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 9999999999999999999999998 788877665444678999999999998877888888999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHc
Q 028315 160 NTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 160 ~~~~i~~l~~~i~~~~~~ 177 (210)
+|.|++++|++|.+.+.+
T Consensus 161 ~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 161 TGTNVEKAVERLLDLVMK 178 (180)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 30
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=201.01 Aligned_cols=170 Identities=44% Similarity=0.741 Sum_probs=154.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEE-CCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTV-GGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
.|++|++++|++-+|||+|++++..+++.+ ..||.|.+++..-+.+ ++..+++++|||+|+++|++..+.+++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 689999999999999999999999999999 8899999888776655 57789999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcE-EEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK-ILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
++|||+++..+|+.+. .|..........+.+++ .+|++|+|+..+++++.++++.++..+|..++++||++|.||++.
T Consensus 86 llvyditnr~sfehv~-~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVE-NWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred EEEEeccchhhHHHHH-HHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 9999999999999999 78777766665455554 588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccchh
Q 028315 168 FKDLLYKILEVPSL 181 (210)
Q Consensus 168 ~~~i~~~~~~~~~~ 181 (210)
|+.|.+.+....+.
T Consensus 165 F~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988876654
No 31
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.3e-34 Score=208.16 Aligned_cols=161 Identities=25% Similarity=0.532 Sum_probs=141.6
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
.+||+++|++|||||||++++.++.+.. +.|+.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 3799999999999999999999998876 6778776654 5677888999999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CCccCHHHHHHHHHHcCC-eEEEecc
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS------------ERAVTREEGMILAQEHKC-LFLECSA 158 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa 158 (210)
||++++.+|+.+...|...+.... ++.|+++|+||.|+.+ .+.++.+++..++..+++ +|++|||
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA 157 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSA 157 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECcc
Confidence 999999999997558888887654 5789999999999854 245888999999999997 7999999
Q ss_pred cCCcC-HHHHHHHHHHHHH
Q 028315 159 KNTED-VKQCFKDLLYKIL 176 (210)
Q Consensus 159 ~~~~~-i~~l~~~i~~~~~ 176 (210)
++|.| |+++|..+++..+
T Consensus 158 ~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 158 FTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CcCCcCHHHHHHHHHHHHh
Confidence 99995 9999999998654
No 32
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.8e-36 Score=202.29 Aligned_cols=178 Identities=36% Similarity=0.614 Sum_probs=160.6
Q ss_pred CCCCCCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhh
Q 028315 2 GSKVGNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSS 80 (210)
Q Consensus 2 ~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 80 (210)
+.......+.+.+|++++|..-+|||+|+-|++..+|.. ...|....+....+.+.+....+.+|||+|+++|..+-+.
T Consensus 2 ~~~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPI 81 (218)
T KOG0088|consen 2 MLETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPI 81 (218)
T ss_pred CccccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCce
Confidence 333444556789999999999999999999999999977 7777777788888888889999999999999999999999
Q ss_pred hhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccC
Q 028315 81 YYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKN 160 (210)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 160 (210)
+|+.++++++|||++|.++|+.+. .|...+.... ...+-+++|+||+|+..++.+..++++..++.-|+.|+++||++
T Consensus 82 YYRgSnGalLVyDITDrdSFqKVK-nWV~Elr~ml-Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~ 159 (218)
T KOG0088|consen 82 YYRGSNGALLVYDITDRDSFQKVK-NWVLELRTML-GNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKD 159 (218)
T ss_pred EEeCCCceEEEEeccchHHHHHHH-HHHHHHHHHh-CCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheeccccc
Confidence 999999999999999999999999 7888887766 57788999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHccchh
Q 028315 161 TEDVKQCFKDLLYKILEVPSL 181 (210)
Q Consensus 161 ~~~i~~l~~~i~~~~~~~~~~ 181 (210)
+.||.++|..+...+++..+.
T Consensus 160 N~Gi~elFe~Lt~~MiE~~s~ 180 (218)
T KOG0088|consen 160 NVGISELFESLTAKMIEHSSQ 180 (218)
T ss_pred ccCHHHHHHHHHHHHHHHhhh
Confidence 999999999999988876643
No 33
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=6.8e-34 Score=208.99 Aligned_cols=162 Identities=29% Similarity=0.543 Sum_probs=141.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
.+||+++|+.|||||||+.++..+.|.. +.||.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 5899999999999999999999999866 7788876554 4457888899999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------CccCHHHHHHHHHHcC-CeEEEecc
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE------------RAVTREEGMILAQEHK-CLFLECSA 158 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa 158 (210)
||++++.+|+.+...|...+.... .+.|+++|+||.|+.+. +.+..+++..++...+ .+++++||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 999999999999767887766543 57999999999999654 2366778889998888 58999999
Q ss_pred cCCcCHHHHHHHHHHHHHc
Q 028315 159 KNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 159 ~~~~~i~~l~~~i~~~~~~ 177 (210)
++|.||+++|.++++.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998863
No 34
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-35 Score=196.95 Aligned_cols=175 Identities=41% Similarity=0.752 Sum_probs=160.3
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcccc
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAH 86 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (210)
+....-+||+++|+.|+|||+|+++|..+-|++ ...++|.++..+++.+.+..+++++|||+|+++|++....+++.++
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 345568999999999999999999999999988 8899999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHH
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 166 (210)
++|+|||++...+|.-+. .|+..++.+. +.++--++|+||.|+.+.+++.....+++.+.....+.++||++-.|++.
T Consensus 82 alilvydiscqpsfdclp-ewlreie~ya-n~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~ 159 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLP-EWLREIEQYA-NNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEK 159 (213)
T ss_pred eEEEEEecccCcchhhhH-HHHHHHHHHh-hcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHH
Confidence 999999999999999999 8999999888 56777889999999999999999999999988877899999999999999
Q ss_pred HHHHHHHHHHccchhhhc
Q 028315 167 CFKDLLYKILEVPSLLEQ 184 (210)
Q Consensus 167 l~~~i~~~~~~~~~~~~~ 184 (210)
+|..+.-++.........
T Consensus 160 lf~~~a~rli~~ar~~d~ 177 (213)
T KOG0095|consen 160 LFLDLACRLISEARQNDL 177 (213)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999998888765554433
No 35
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.1e-33 Score=203.30 Aligned_cols=162 Identities=46% Similarity=0.761 Sum_probs=143.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|||||||++++.+..+.. +.++.+.++....+...+..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 799999999999999999999998876 6788887777777777788899999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|++++.+++.+. .|...+.... ....|+++|+||+|+.+.+.+..++...++..++.+++++||++|.|++++|+++.
T Consensus 82 d~~~~~s~~~~~-~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 82 DITNEESFNAVQ-DWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 999999999998 6877776544 35789999999999987777777888888888889999999999999999999999
Q ss_pred HHHHc
Q 028315 173 YKILE 177 (210)
Q Consensus 173 ~~~~~ 177 (210)
+.+.+
T Consensus 160 ~~~~~ 164 (165)
T cd01865 160 DIICD 164 (165)
T ss_pred HHHHh
Confidence 87653
No 36
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.4e-33 Score=203.04 Aligned_cols=162 Identities=52% Similarity=0.837 Sum_probs=145.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
.+||+++|++|||||||++++.++.+.. +.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 5899999999999999999999988766 677888788777778888889999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i 171 (210)
||++++.+|..+. .|+..+.... ..+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|.++
T Consensus 82 ~d~~~~~s~~~l~-~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 82 YDVTDQESFNNVK-QWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred EECcCHHHHHhHH-HHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence 9999999999998 6877776554 3578999999999998777788888888998899999999999999999999999
Q ss_pred HHHHH
Q 028315 172 LYKIL 176 (210)
Q Consensus 172 ~~~~~ 176 (210)
++.+.
T Consensus 160 ~~~~~ 164 (166)
T cd01869 160 AREIK 164 (166)
T ss_pred HHHHH
Confidence 98875
No 37
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-34 Score=193.25 Aligned_cols=168 Identities=46% Similarity=0.760 Sum_probs=157.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
++-+|++++|+..+|||+|+.++.+..|.. ...|.|.++..+++.-....+.+++|||+|+++++.+...++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 678999999999999999999999999988 8899999999998877778899999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
++||+++.++|..+. -|...+...+ ..+.|+++|+||+|+..++.++.+..+.++..+|+.+|++||+.+.|++++|.
T Consensus 99 LmyDitNeeSf~svq-dw~tqIktys-w~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe 176 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQ-DWITQIKTYS-WDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFE 176 (193)
T ss_pred EEEecCCHHHHHHHH-HHHHHheeee-ccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHH
Confidence 999999999999999 7888877776 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccch
Q 028315 170 DLLYKILEVPS 180 (210)
Q Consensus 170 ~i~~~~~~~~~ 180 (210)
.++..+-+.+.
T Consensus 177 ~lv~~Ic~kms 187 (193)
T KOG0093|consen 177 RLVDIICDKMS 187 (193)
T ss_pred HHHHHHHHHhh
Confidence 99998876654
No 38
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=9.7e-34 Score=211.38 Aligned_cols=164 Identities=24% Similarity=0.523 Sum_probs=143.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|||||+|+.+|..+.+.. +.||.+..+. ..+.+++..+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 799999999999999999999998877 7788876664 46678899999999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------CccCHHHHHHHHHHcCC-eEEEeccc
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE------------RAVTREEGMILAQEHKC-LFLECSAK 159 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~ 159 (210)
|++++++|+.+...|...+.... .+.|+++|+||+|+... ..++.+++..+++..++ +|+||||+
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~--~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC--PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 99999999999768887765443 67999999999999642 13677889999999996 89999999
Q ss_pred CCcC-HHHHHHHHHHHHHccch
Q 028315 160 NTED-VKQCFKDLLYKILEVPS 180 (210)
Q Consensus 160 ~~~~-i~~l~~~i~~~~~~~~~ 180 (210)
++.+ |+++|..+....+.+.+
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhccC
Confidence 9885 99999999998876554
No 39
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.1e-33 Score=202.49 Aligned_cols=159 Identities=43% Similarity=0.774 Sum_probs=143.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|+|||||++++.++.+.. +.++.+.++....+.+.+..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 489999999999999999999998876 7888888887777888888899999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|++++.+|+.+. .|+..+.... ..+.|+++|+||.|+...+.+..+++..+++.++++|+++||++|.|++++|.+|.
T Consensus 81 d~~~~~sf~~~~-~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 81 DISSERSYQHIM-KWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999998 6777776554 45789999999999988888888899999998999999999999999999999998
Q ss_pred HH
Q 028315 173 YK 174 (210)
Q Consensus 173 ~~ 174 (210)
+.
T Consensus 159 ~~ 160 (161)
T cd04117 159 EL 160 (161)
T ss_pred hh
Confidence 64
No 40
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.3e-33 Score=203.05 Aligned_cols=163 Identities=31% Similarity=0.604 Sum_probs=145.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|||||||++++.+..+.. +.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999998776 7888888888888888889999999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccC----CCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTN----QDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
|++++.+++.+. .|...+...... .+.|+++|+||+|+...+.+..++...+....+++++++||++|.|++++|
T Consensus 81 D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 81 DVTDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred ECCCHHHHHhHH-HHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 999999999988 788777665532 568999999999997666777888888888888999999999999999999
Q ss_pred HHHHHHHHc
Q 028315 169 KDLLYKILE 177 (210)
Q Consensus 169 ~~i~~~~~~ 177 (210)
++|++.+++
T Consensus 160 ~~l~~~l~~ 168 (168)
T cd04119 160 QTLFSSIVD 168 (168)
T ss_pred HHHHHHHhC
Confidence 999988763
No 41
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.5e-33 Score=204.44 Aligned_cols=160 Identities=27% Similarity=0.518 Sum_probs=138.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
.+||+++|++|||||||++++..+.+.. +.|+.+..+. ..+.+.+..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 3799999999999999999999998865 7788876654 3456788889999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------CccCHHHHHHHHHHcC-CeEEEecc
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE------------RAVTREEGMILAQEHK-CLFLECSA 158 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa 158 (210)
||++++++|+.+...|...+.... .+.|+++|+||+|+.+. +.+..++++.++...+ ..|++|||
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 157 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSA 157 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecC
Confidence 999999999999767888776543 57899999999998643 4677788888888887 68999999
Q ss_pred cCCcCHHHHHHHHHHHH
Q 028315 159 KNTEDVKQCFKDLLYKI 175 (210)
Q Consensus 159 ~~~~~i~~l~~~i~~~~ 175 (210)
++|.|++++|+.+++.+
T Consensus 158 ~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 158 LTQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998754
No 42
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.2e-33 Score=202.48 Aligned_cols=160 Identities=35% Similarity=0.614 Sum_probs=138.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|||||||++++..+.+.. +.++.+ +.+...+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 799999999999999999999988876 556654 444556677888899999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|++++.+|+.+. .|...+.......+.|+++|+||+|+.+.+.+..++...+...++.+++++||++|.|++++|++++
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 81 SITSQSSFNDLQ-DLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999888 5666665554356789999999999977677777777888888888999999999999999999998
Q ss_pred HHH
Q 028315 173 YKI 175 (210)
Q Consensus 173 ~~~ 175 (210)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 764
No 43
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-34 Score=193.33 Aligned_cols=180 Identities=46% Similarity=0.723 Sum_probs=164.1
Q ss_pred CCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccc
Q 028315 7 NNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGA 85 (210)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (210)
++..++-+|++++|+.|+|||+|+++|...+|.. .+.++|.++....+.+.+..+++++|||+|+++|++..+.+++.+
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 4567889999999999999999999999999988 889999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHH
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 165 (210)
.++++|||+++.++|+++. .|+.-.+... .+++-+++++||.|+.+++++...++..|+.+..+.+.++||++|.|++
T Consensus 83 AGAlLVYD~TsrdsfnaLt-nWL~DaR~lA-s~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVE 160 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALT-NWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE 160 (214)
T ss_pred cceEEEEeccchhhHHHHH-HHHHHHHhhC-CCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHH
Confidence 9999999999999999999 8888877666 6788889999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHHHHccchhhhccccc
Q 028315 166 QCFKDLLYKILEVPSLLEQGSAV 188 (210)
Q Consensus 166 ~l~~~i~~~~~~~~~~~~~~~~~ 188 (210)
+.|-...+.++.+-..-+.+.+.
T Consensus 161 EaFl~c~~tIl~kIE~GElDPer 183 (214)
T KOG0086|consen 161 EAFLKCARTILNKIESGELDPER 183 (214)
T ss_pred HHHHHHHHHHHHHHhhcCCCHHH
Confidence 99999998888665544444333
No 44
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2e-33 Score=205.97 Aligned_cols=165 Identities=28% Similarity=0.504 Sum_probs=139.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEEC-CeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVG-GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
+||+++|++|+|||||+++|.++.+.. +.++.+..+.. .+... +..+.+.+|||||++.+..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999998876 66666665543 34444 6778999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC----CccCHHHHHHHHHHcCC-eEEEecccCCcCHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE----RAVTREEGMILAQEHKC-LFLECSAKNTEDVKQ 166 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~ 166 (210)
||++++.+|+.+...|...+.... .+.|+++|+||.|+... +.+..+++..++..++. +++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 157 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC--PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEE 157 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHH
Confidence 999999999999767877765443 57899999999998653 34667788888888888 899999999999999
Q ss_pred HHHHHHHHHHccchh
Q 028315 167 CFKDLLYKILEVPSL 181 (210)
Q Consensus 167 l~~~i~~~~~~~~~~ 181 (210)
+|.++.+.+......
T Consensus 158 ~f~~l~~~~~~~~~~ 172 (187)
T cd04132 158 VFDTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999998855543
No 45
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=5.7e-33 Score=204.55 Aligned_cols=164 Identities=30% Similarity=0.535 Sum_probs=142.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
+||+++|++|+|||||+++|.++.+.. +.++.+.++....+.+++..+.+.+|||||.+.+..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999998864 778888888777888898899999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC----CccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE----RAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... +.+..++...++...+++++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~-~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 157 (193)
T cd04118 81 YDLTDSSSFERAK-FWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDEL 157 (193)
T ss_pred EECCCHHHHHHHH-HHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999887 6877775532 47899999999998532 345566777788888899999999999999999
Q ss_pred HHHHHHHHHccch
Q 028315 168 FKDLLYKILEVPS 180 (210)
Q Consensus 168 ~~~i~~~~~~~~~ 180 (210)
|+++.+.+.+...
T Consensus 158 ~~~i~~~~~~~~~ 170 (193)
T cd04118 158 FQKVAEDFVSRAN 170 (193)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999976543
No 46
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=6.1e-33 Score=207.82 Aligned_cols=165 Identities=30% Similarity=0.522 Sum_probs=144.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
...+||+++|.+|||||||++++..+.+.. +.++.+.++....+..++..+.+.+|||+|++.|..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 678999999999999999999999988876 8899998888877777788899999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+|||++++.+|+.+. .|...+.... .+.|+++|+||+|+.. +.+..++. .+....++.|++|||++|.|++++|.
T Consensus 91 lvfD~~~~~s~~~i~-~w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~ 165 (219)
T PLN03071 91 IMFDVTARLTYKNVP-TWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFL 165 (219)
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHHhC--CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHH
Confidence 999999999999998 7877776554 5789999999999864 34444444 66777888999999999999999999
Q ss_pred HHHHHHHccch
Q 028315 170 DLLYKILEVPS 180 (210)
Q Consensus 170 ~i~~~~~~~~~ 180 (210)
+|++.+.+...
T Consensus 166 ~l~~~~~~~~~ 176 (219)
T PLN03071 166 YLARKLAGDPN 176 (219)
T ss_pred HHHHHHHcCcc
Confidence 99999876543
No 47
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=6.5e-33 Score=199.95 Aligned_cols=165 Identities=47% Similarity=0.815 Sum_probs=147.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
++.+||+++|.+|+|||||++++.+..+.. +.++.+.++....+.+.+....+.+|||||++.+...+..+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 467999999999999999999999988766 6677788887777888888899999999999999988999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+|+|++++.+++.+. .|+..+.... .++.|+++|+||.|+.....+..++...++...+++++++||+++.|++++|.
T Consensus 82 ~v~d~~~~~s~~~~~-~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~ 159 (168)
T cd01866 82 LVYDITRRETFNHLT-SWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFI 159 (168)
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999998 7887776554 46789999999999987777888888888888899999999999999999999
Q ss_pred HHHHHHHc
Q 028315 170 DLLYKILE 177 (210)
Q Consensus 170 ~i~~~~~~ 177 (210)
++.+.+.+
T Consensus 160 ~~~~~~~~ 167 (168)
T cd01866 160 NTAKEIYE 167 (168)
T ss_pred HHHHHHHh
Confidence 99988764
No 48
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=5.1e-33 Score=199.80 Aligned_cols=162 Identities=46% Similarity=0.764 Sum_probs=145.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
+.+||+++|++|||||||++++.+..+.. +.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 56899999999999999999999888775 77888888888888888888999999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKD 170 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~ 170 (210)
|+|++++.+++.+. .|+..+.... ..+.|+++|+||.|+...+.+..++...++...+++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 159 (165)
T cd01868 82 VYDITKKQTFENVE-RWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQ 159 (165)
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999998 6877776654 346899999999999877777888888888888899999999999999999999
Q ss_pred HHHHH
Q 028315 171 LLYKI 175 (210)
Q Consensus 171 i~~~~ 175 (210)
+++.+
T Consensus 160 l~~~i 164 (165)
T cd01868 160 LLTEI 164 (165)
T ss_pred HHHHh
Confidence 98765
No 49
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=4e-33 Score=200.22 Aligned_cols=162 Identities=35% Similarity=0.599 Sum_probs=139.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
++||+++|.+|||||||++++..+.+.. +.++.+..+ .....+.+..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 4799999999999999999999888766 566666544 35567788889999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i 171 (210)
||++++.+|+.+. .|...+.......+.|+++|+||+|+...+.+..++...+++.++++++++||++|.|++++|.++
T Consensus 80 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 80 YSITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 9999999999988 555555444435679999999999998777777777778888888999999999999999999999
Q ss_pred HHHHH
Q 028315 172 LYKIL 176 (210)
Q Consensus 172 ~~~~~ 176 (210)
++.+.
T Consensus 159 ~~~l~ 163 (164)
T cd04175 159 VRQIN 163 (164)
T ss_pred HHHhh
Confidence 98764
No 50
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=5.4e-33 Score=202.54 Aligned_cols=167 Identities=26% Similarity=0.508 Sum_probs=141.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|+.|||||||+++|.++.+.. +.||.+.++....+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999998877 8899998888878888988999999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC-----CccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE-----RAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
|++++.+|+.+. .|...+.... ....| ++|+||+|+... .....++.+.++...+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~-~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIK-EWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999998 6777776543 34566 678999998521 112235667788888899999999999999999
Q ss_pred HHHHHHHHHccchhhh
Q 028315 168 FKDLLYKILEVPSLLE 183 (210)
Q Consensus 168 ~~~i~~~~~~~~~~~~ 183 (210)
|.++.+.+.+.+....
T Consensus 158 f~~l~~~l~~~~~~~~ 173 (182)
T cd04128 158 FKIVLAKAFDLPLTIP 173 (182)
T ss_pred HHHHHHHHHhcCCChh
Confidence 9999999986554433
No 51
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=7.2e-33 Score=198.41 Aligned_cols=160 Identities=46% Similarity=0.755 Sum_probs=149.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEe
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYD 93 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (210)
||+++|+++||||||+++|.++.+.. +.++.+.+.....+.+++..+.+.+||++|++.+..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999877 77888889999999999999999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHHH
Q 028315 94 VTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLY 173 (210)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~ 173 (210)
++++.+|+.+. .|+..+.... ..+.|++|++||.|+.+.+.++.++++.++..++.+|+++||+++.||.++|..+++
T Consensus 81 ~~~~~S~~~~~-~~~~~i~~~~-~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~ 158 (162)
T PF00071_consen 81 VTDEESFENLK-KWLEEIQKYK-PEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIR 158 (162)
T ss_dssp TTBHHHHHTHH-HHHHHHHHHS-TTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred ccccccccccc-cccccccccc-cccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999 8999888777 356899999999999888899999999999999999999999999999999999999
Q ss_pred HHH
Q 028315 174 KIL 176 (210)
Q Consensus 174 ~~~ 176 (210)
.+.
T Consensus 159 ~i~ 161 (162)
T PF00071_consen 159 KIL 161 (162)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 52
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.8e-33 Score=199.21 Aligned_cols=161 Identities=46% Similarity=0.779 Sum_probs=142.2
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
+.+||+++|++|+|||||++++..+.+.. +.++.+.++....+.+++..+.+++|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 57999999999999999999999888776 66777777777777888888899999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEecccCCcCHHHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC-LFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~l~~ 169 (210)
|||++++.+++.+. .|+..+.... ..+.|+++|+||+|+...+.+..+++..+++..+. .++++||++|.|++++|.
T Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 82 AYDITRRSSFESVP-HWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred EEECcCHHHHHhHH-HHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 99999999999988 7877776543 46789999999999987777888888888888776 689999999999999999
Q ss_pred HHHHH
Q 028315 170 DLLYK 174 (210)
Q Consensus 170 ~i~~~ 174 (210)
++.+.
T Consensus 160 ~l~~~ 164 (165)
T cd01864 160 LMATE 164 (165)
T ss_pred HHHHh
Confidence 99875
No 53
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=6.6e-33 Score=198.46 Aligned_cols=159 Identities=47% Similarity=0.767 Sum_probs=143.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|+|||||++++.+..+.. ..++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999998766 7788888888888888888899999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|++++.+++.+. .|+..+.... ..+.|+++|+||.|+...+.+..+++..++...++.++++||+++.|++++|++++
T Consensus 81 d~~~~~s~~~~~-~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 81 DITNRTSFEALP-TWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 999999999998 6777665544 46889999999999987777888888899999999999999999999999999998
Q ss_pred HH
Q 028315 173 YK 174 (210)
Q Consensus 173 ~~ 174 (210)
+.
T Consensus 159 ~~ 160 (161)
T cd04113 159 RS 160 (161)
T ss_pred Hh
Confidence 75
No 54
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=8.6e-33 Score=202.90 Aligned_cols=160 Identities=30% Similarity=0.506 Sum_probs=136.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEe
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYD 93 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (210)
||+++|++|||||||+++|.++.+.. +.|+.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++++|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 79999999999999999999998877 6677766543 445677888999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC------------ccCHHHHHHHHHHcC-CeEEEecccC
Q 028315 94 VTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER------------AVTREEGMILAQEHK-CLFLECSAKN 160 (210)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa~~ 160 (210)
++++.+|+.+...|...+.... .+.|+++|+||+|+...+ .+..+++..++...+ ++|++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 9999999998767887776543 578999999999996543 345666777777776 6899999999
Q ss_pred CcCHHHHHHHHHHHHHc
Q 028315 161 TEDVKQCFKDLLYKILE 177 (210)
Q Consensus 161 ~~~i~~l~~~i~~~~~~ 177 (210)
|.|++++|.++.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998873
No 55
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=7.6e-33 Score=198.54 Aligned_cols=161 Identities=34% Similarity=0.590 Sum_probs=138.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
++||+++|.+|+|||||++++..+.+.. +.++.+ ++....+.+++..+.+.+|||||++.|..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 3799999999999999999999998877 445543 45556677788888999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i 171 (210)
||++++.+|+.+. .|...+.......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|.++
T Consensus 80 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 80 YSLVNQQTFQDIK-PMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999998 566666554434689999999999997766777777788888888899999999999999999999
Q ss_pred HHHH
Q 028315 172 LYKI 175 (210)
Q Consensus 172 ~~~~ 175 (210)
.+.+
T Consensus 159 ~~~l 162 (163)
T cd04176 159 VRQM 162 (163)
T ss_pred HHhc
Confidence 8754
No 56
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1e-32 Score=197.97 Aligned_cols=161 Identities=37% Similarity=0.626 Sum_probs=137.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|||||||++++.+..+.. +.++.+ +.......+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 489999999999999999999988876 445444 344455677888899999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|++++.+|+.+. .|...+.......+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++|+
T Consensus 80 d~~~~~s~~~~~-~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 80 SITDRQSFEEIK-KFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence 999999999998 5555555444356789999999999987777777788888888899999999999999999999999
Q ss_pred HHHH
Q 028315 173 YKIL 176 (210)
Q Consensus 173 ~~~~ 176 (210)
+.+.
T Consensus 159 ~~~~ 162 (164)
T smart00173 159 REIR 162 (164)
T ss_pred HHHh
Confidence 8765
No 57
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.8e-32 Score=197.88 Aligned_cols=162 Identities=31% Similarity=0.552 Sum_probs=140.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEe
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYD 93 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (210)
||+++|.+|||||||++++.++.+.. +.++.+.++....+.+.+..+.+++|||||++.|...+..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999998876 78999888887788888888999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCc--cCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHH
Q 028315 94 VTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERA--VTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i 171 (210)
++++.++..+. .|...+.........|+++|+||.|+.+.+. ...+++..++..++.+++++||++|.|++++|..+
T Consensus 82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 82 LTDVASLEHTR-QWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred CcCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999998 6777664433234578999999999865433 34556677778888899999999999999999999
Q ss_pred HHHHHc
Q 028315 172 LYKILE 177 (210)
Q Consensus 172 ~~~~~~ 177 (210)
.+.+.+
T Consensus 161 ~~~~~~ 166 (170)
T cd04108 161 AALTFE 166 (170)
T ss_pred HHHHHH
Confidence 998864
No 58
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=1.2e-32 Score=199.43 Aligned_cols=158 Identities=29% Similarity=0.507 Sum_probs=136.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|.+|||||||+.++..+.+.. +.++.+. .+...+.+++..+.+.+|||||++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 799999999999999999999988866 6677654 44445677888899999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------CccCHHHHHHHHHHcCC-eEEEeccc
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE------------RAVTREEGMILAQEHKC-LFLECSAK 159 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~ 159 (210)
|++++.+|+.+...|...+.... .+.|+++|+||.|+.+. +.+..+++..++..++. ++++|||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 99999999999767887776543 57999999999999543 34778888999998885 89999999
Q ss_pred CCcCHHHHHHHHHHH
Q 028315 160 NTEDVKQCFKDLLYK 174 (210)
Q Consensus 160 ~~~~i~~l~~~i~~~ 174 (210)
+|.|++++|+.+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999998764
No 59
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=9.9e-33 Score=197.65 Aligned_cols=158 Identities=35% Similarity=0.582 Sum_probs=140.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEEC--CeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVG--GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
+||+++|++|+|||||++++.++.+.. +.++.+.++....+.+. +..+.+++|||||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999988766 67888888776666666 778899999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKD 170 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~ 170 (210)
|||++++++++.+. .|+..+.... .+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~l~-~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (162)
T cd04106 81 VFSTTDRESFEAIE-SWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEY 157 (162)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999988 7877776544 57899999999999877778888888899999999999999999999999999
Q ss_pred HHHH
Q 028315 171 LLYK 174 (210)
Q Consensus 171 i~~~ 174 (210)
|.+.
T Consensus 158 l~~~ 161 (162)
T cd04106 158 LAEK 161 (162)
T ss_pred HHHh
Confidence 8754
No 60
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=2.1e-32 Score=196.28 Aligned_cols=161 Identities=35% Similarity=0.569 Sum_probs=137.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
.+||+++|++|+|||||++++.+..+.. +.++.+.. ......+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 5899999999999999999999887765 55555533 344556788889999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i 171 (210)
||++++.+|+.+. .|...+.......+.|+++++||+|+...+.+..++...++...+++++++||++|.|++++|+++
T Consensus 81 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 81 FSVTDRGSFEEVD-KFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EECCCHHHHHHHH-HHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 9999999999998 566655554435678999999999998777777777888888888999999999999999999999
Q ss_pred HHHH
Q 028315 172 LYKI 175 (210)
Q Consensus 172 ~~~~ 175 (210)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8764
No 61
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=2.6e-32 Score=196.43 Aligned_cols=161 Identities=30% Similarity=0.566 Sum_probs=138.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|||||||++++..+.+.. +.++.+.++....+..+...+.+.+|||||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 589999999999999999999888765 7788888887777777788899999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|++++.+++.+. .|...+.... .+.|+++|+||+|+.. +.+.. +...+....+.+++++||++|.|++++|++|.
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~--~~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 81 DVTSRVTYKNVP-NWHRDLVRVC--GNIPIVLCGNKVDIKD-RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhC--CCCcEEEEEEchhccc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence 999999999998 6888777665 3899999999999973 33333 34556667788999999999999999999999
Q ss_pred HHHHccc
Q 028315 173 YKILEVP 179 (210)
Q Consensus 173 ~~~~~~~ 179 (210)
+.+.+.+
T Consensus 156 ~~~~~~~ 162 (166)
T cd00877 156 RKLLGNP 162 (166)
T ss_pred HHHHhcc
Confidence 9987644
No 62
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=2.4e-32 Score=197.32 Aligned_cols=163 Identities=37% Similarity=0.665 Sum_probs=145.1
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc-cchhhhhccccEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG-TLTSSYYRGAHGII 89 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~i 89 (210)
+.+||+++|++|+|||||++++..+.+.. +.++.+.++....+.+++..+.+.+|||||++.+. .++..+++++|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 35899999999999999999999988876 77888888887778888889999999999999886 57888899999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccC---CcCHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKN---TEDVKQ 166 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---~~~i~~ 166 (210)
+|||++++.+|+.+. .|+..+.......+.|+++|+||+|+...+.+..++...++...+++++++||++ +.++++
T Consensus 81 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~ 159 (170)
T cd04115 81 FVYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEA 159 (170)
T ss_pred EEEECCCHHHHHhHH-HHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHH
Confidence 999999999999998 7888877665456799999999999988888888888889988889999999999 899999
Q ss_pred HHHHHHHHH
Q 028315 167 CFKDLLYKI 175 (210)
Q Consensus 167 l~~~i~~~~ 175 (210)
+|..+++.+
T Consensus 160 ~f~~l~~~~ 168 (170)
T cd04115 160 IFMTLAHKL 168 (170)
T ss_pred HHHHHHHHh
Confidence 999998765
No 63
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=3.4e-32 Score=194.61 Aligned_cols=160 Identities=31% Similarity=0.574 Sum_probs=135.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
++||+++|++|||||||+++|.++.+.. +.++.+..+ .....+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 3799999999999999999999988766 556665443 45567788888999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i 171 (210)
||++++.+|+.+. .|...+.......+.|+++|+||+|+.. +.+..++...+....+++++++||++|.|++++|.++
T Consensus 80 ~~~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 80 FAINSRKSFEDIH-TYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999888 5666555554356889999999999865 4566677778888888999999999999999999999
Q ss_pred HHHH
Q 028315 172 LYKI 175 (210)
Q Consensus 172 ~~~~ 175 (210)
.+.+
T Consensus 158 ~~~~ 161 (162)
T cd04138 158 VREI 161 (162)
T ss_pred HHHh
Confidence 8754
No 64
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=5e-32 Score=195.61 Aligned_cols=163 Identities=37% Similarity=0.627 Sum_probs=141.6
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
++..+||+++|++|+|||||++++.++.+.. +.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 4577999999999999999999999888876 677888877777778889999999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcC-CeEEEecccCCcCH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYST---NQDCVKILVGNKVDRDSERAVTREEGMILAQEHK-CLFLECSAKNTEDV 164 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i 164 (210)
++|||++++.+++.+. .|...+..... ..+.|+++|+||.|+. .+.+..+++..++..++ .+++++||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 159 (170)
T cd04116 82 LLTFAVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNV 159 (170)
T ss_pred EEEEECCCHHHHHhHH-HHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCH
Confidence 9999999999999988 67666544332 2568999999999986 45677788888888887 47999999999999
Q ss_pred HHHHHHHHHH
Q 028315 165 KQCFKDLLYK 174 (210)
Q Consensus 165 ~~l~~~i~~~ 174 (210)
.++|.++++.
T Consensus 160 ~~~~~~~~~~ 169 (170)
T cd04116 160 AAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 65
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=5.2e-32 Score=194.17 Aligned_cols=162 Identities=54% Similarity=0.872 Sum_probs=144.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|+|||||++++.+..+.. ..++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999888766 6688888888777888888889999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|++++.+++.+. .|+..+.... ..+.|+++|+||+|+...+.+..+++..+....+++++++||++|.|++++|+++.
T Consensus 81 d~~~~~s~~~~~-~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 81 DITNRESFENLK-NWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999988 6888776655 36899999999999977677788888888888899999999999999999999999
Q ss_pred HHHHc
Q 028315 173 YKILE 177 (210)
Q Consensus 173 ~~~~~ 177 (210)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T smart00175 159 REILK 163 (164)
T ss_pred HHHhh
Confidence 98764
No 66
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=5.9e-32 Score=193.63 Aligned_cols=159 Identities=35% Similarity=0.565 Sum_probs=136.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|.+|||||||++++.++.+.+ +.++.+.+.......+++..+.+.+|||||++.|...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988876 5667777777767778888999999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+... . .++...++...+++++++||++|.|++++|+.+.
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~--~~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (161)
T cd04124 81 DVTRKITYKNLS-KWYEELREYR--PEIPCIVVANKIDLDPS--V-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI 154 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhC--CCCcEEEEEECccCchh--H-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999887 7777775543 57899999999998432 1 2344556666788999999999999999999999
Q ss_pred HHHHcc
Q 028315 173 YKILEV 178 (210)
Q Consensus 173 ~~~~~~ 178 (210)
+.+.+.
T Consensus 155 ~~~~~~ 160 (161)
T cd04124 155 KLAVSY 160 (161)
T ss_pred HHHHhc
Confidence 988754
No 67
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=8.5e-32 Score=200.60 Aligned_cols=167 Identities=45% Similarity=0.772 Sum_probs=148.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
.+.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+.+..+.+.+|||+|++.+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 467999999999999999999999988766 6788888888777888888899999999999999989999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+|||++++.+|+.+. .|...+.... ....|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|.
T Consensus 84 lv~D~~~~~s~~~l~-~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~ 161 (210)
T PLN03108 84 LVYDITRRETFNHLA-SWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (210)
T ss_pred EEEECCcHHHHHHHH-HHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999987 5666554443 35789999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHHccc
Q 028315 170 DLLYKILEVP 179 (210)
Q Consensus 170 ~i~~~~~~~~ 179 (210)
++++.+.+..
T Consensus 162 ~l~~~~~~~~ 171 (210)
T PLN03108 162 KTAAKIYKKI 171 (210)
T ss_pred HHHHHHHHHh
Confidence 9999987643
No 68
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=6.3e-32 Score=194.21 Aligned_cols=158 Identities=30% Similarity=0.509 Sum_probs=134.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|||||||++++.++.+.. +.++.+.++ ......+...+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 799999999999999999999998866 556655444 444566777899999999999999988888999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYST--NQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKD 170 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~ 170 (210)
|++++.+++.+. .|...+..... ..+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 81 SVTSKQSLEELK-PIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred ECCCHHHHHHHH-HHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence 999999999988 56555554331 257899999999999876778887888888888889999999999999999999
Q ss_pred HHH
Q 028315 171 LLY 173 (210)
Q Consensus 171 i~~ 173 (210)
|++
T Consensus 160 l~~ 162 (165)
T cd04140 160 LLN 162 (165)
T ss_pred HHh
Confidence 875
No 69
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=8.2e-32 Score=195.15 Aligned_cols=159 Identities=31% Similarity=0.581 Sum_probs=136.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeC
Q 028315 16 ILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDV 94 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (210)
|+++|++|||||||++++.++.+.. +.++....+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 5899999999999999999998877 556655444 44567788889999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC------------ccCHHHHHHHHHHcCC-eEEEecccCC
Q 028315 95 TRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER------------AVTREEGMILAQEHKC-LFLECSAKNT 161 (210)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~sa~~~ 161 (210)
+++.+|+.+...|...+.... .+.|+++|+||+|+.... .++.+++..++...+. .++++||++|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 157 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQ 157 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCC
Confidence 999999999767888876654 579999999999986532 3677788889998886 8999999999
Q ss_pred cCHHHHHHHHHHHHHc
Q 028315 162 EDVKQCFKDLLYKILE 177 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~~ 177 (210)
.|++++|+.+.+.+..
T Consensus 158 ~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 158 EGVREVFEEAIRAALN 173 (174)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 9999999999988753
No 70
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.5e-31 Score=191.67 Aligned_cols=161 Identities=41% Similarity=0.714 Sum_probs=144.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
++||+++|++|+|||||++++.+..+.. ..++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4899999999999999999999999877 788888888888888999999999999999999998999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i 171 (210)
+|++++.++.... .|+..+.... ....|+++++||+|+...+....++...+....+++++++||++|.|++++|+++
T Consensus 81 ~d~~~~~s~~~~~-~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 81 YDITSEESFEKAK-SWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred EECcCHHHHHHHH-HHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 9999999999988 7777776554 3678999999999997666777778888888888999999999999999999999
Q ss_pred HHHH
Q 028315 172 LYKI 175 (210)
Q Consensus 172 ~~~~ 175 (210)
++.+
T Consensus 159 ~~~l 162 (163)
T cd01860 159 AKKL 162 (163)
T ss_pred HHHh
Confidence 9876
No 71
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=9.5e-32 Score=197.67 Aligned_cols=158 Identities=23% Similarity=0.384 Sum_probs=128.8
Q ss_pred EEEEEEEcCCCCcHHHHHH-HHhhCCC-----CC-CCCceee-EEEEEE--------EEECCeEEEEEEEeCCCCccccc
Q 028315 13 SFKILLIGDSGVGKSSILL-SLISNSV-----HD-PSPTIGV-DFKIKL--------LTVGGKRLKLTIWDTAGQERFGT 76 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~-~l~~~~~-----~~-~~~~~~~-~~~~~~--------~~~~~~~~~~~l~Dt~G~~~~~~ 76 (210)
.+||+++|+.|||||+|+. ++.++.+ .. +.||.+. +.+... ..+++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 6655433 22 5677652 322221 25688899999999999875 3
Q ss_pred chhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-------------------CCcc
Q 028315 77 LTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS-------------------ERAV 137 (210)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~ 137 (210)
....+++++|++++|||++++.+|+.+...|...+.... .+.|+++|+||+|+.+ .+.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 455678999999999999999999999766888776554 4789999999999864 3678
Q ss_pred CHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHHHH
Q 028315 138 TREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~ 174 (210)
..++++.+++.++++|++|||++|.||+++|..+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8999999999999999999999999999999998864
No 72
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=2.3e-31 Score=191.88 Aligned_cols=162 Identities=33% Similarity=0.579 Sum_probs=139.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
++||+++|.+|+|||||++++.++.+.. +.++.+.. ......+++..+.+.+|||||++.|..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 3799999999999999999999888766 55666544 345667788889999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcC-CeEEEecccCCcCHHHHHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHK-CLFLECSAKNTEDVKQCFKD 170 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~l~~~ 170 (210)
||++++.+++... .|...+.......+.|+++++||.|+...+.+..++...+++.++ ++++++||++|.|++++|.+
T Consensus 80 ~~~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~ 158 (168)
T cd04177 80 YSVTSEASLNELG-ELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFID 158 (168)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHH
Confidence 9999999999998 677766654445689999999999998777777777778888887 78999999999999999999
Q ss_pred HHHHHH
Q 028315 171 LLYKIL 176 (210)
Q Consensus 171 i~~~~~ 176 (210)
+++.++
T Consensus 159 i~~~~~ 164 (168)
T cd04177 159 LVRQII 164 (168)
T ss_pred HHHHHh
Confidence 998764
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=1.9e-31 Score=196.72 Aligned_cols=167 Identities=25% Similarity=0.392 Sum_probs=135.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccc--------hhhhhcc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTL--------TSSYYRG 84 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~~ 84 (210)
+||+++|.+|||||||++++.++.+.. +.|+.+.+.+...+.+++..+.+++|||||.+.+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999998877 6777776666666677888899999999997654321 2234789
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH-HcCCeEEEecccCC
Q 028315 85 AHGIILVYDVTRRETFTNLSSVWAKEVELYS--TNQDCVKILVGNKVDRDSERAVTREEGMILAQ-EHKCLFLECSAKNT 161 (210)
Q Consensus 85 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~ 161 (210)
+|++++|||++++.+|+.+. .|...+.... ...+.|+++|+||+|+...+.+..++...++. .++++|++|||++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~-~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVK-LLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHH-HHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 99999999999999999988 5665554432 24678999999999997766666666666644 56889999999999
Q ss_pred cCHHHHHHHHHHHHHccchh
Q 028315 162 EDVKQCFKDLLYKILEVPSL 181 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~~~~~~ 181 (210)
.|++++|+.+++.+..+...
T Consensus 160 ~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 160 WHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCHHHHHHHHHHHhhccCCC
Confidence 99999999999988866654
No 74
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.9e-31 Score=190.81 Aligned_cols=159 Identities=38% Similarity=0.662 Sum_probs=140.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|||||||++++.+..+.. +.++.+.++....+..++..+.+++|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999988876 6788888888888888888889999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|++++.+|+.+. .|+..+.... ..+.|+++++||+|+...+....++...+....+++++++||+++.|++++|.++.
T Consensus 81 d~~~~~s~~~~~-~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 81 DITNRQSFDNTD-KWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999988 6766665443 24799999999999976677778888888888889999999999999999999998
Q ss_pred HH
Q 028315 173 YK 174 (210)
Q Consensus 173 ~~ 174 (210)
+.
T Consensus 159 ~~ 160 (161)
T cd01861 159 SA 160 (161)
T ss_pred Hh
Confidence 75
No 75
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-34 Score=194.19 Aligned_cols=178 Identities=32% Similarity=0.583 Sum_probs=159.4
Q ss_pred CCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEEC---------CeEEEEEEEeCCCCccccc
Q 028315 7 NNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVG---------GKRLKLTIWDTAGQERFGT 76 (210)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~ 76 (210)
+...+|-||.+.+|++|+|||+|+.++..+.|.. -..|.++++..+.+.+. +..+.+++|||+|+++|++
T Consensus 3 ~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS 82 (219)
T KOG0081|consen 3 DGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS 82 (219)
T ss_pred CccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH
Confidence 3455678899999999999999999999999877 77888888888776652 3368999999999999999
Q ss_pred chhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEe
Q 028315 77 LTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLEC 156 (210)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
+...|++.+-+++++||+++.++|.++. .|+..++.+....+.-+++++||+|+.+.+.++.+++..++.++++|||++
T Consensus 83 LTTAFfRDAMGFlLiFDlT~eqSFLnvr-nWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 83 LTTAFFRDAMGFLLIFDLTSEQSFLNVR-NWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFET 161 (219)
T ss_pred HHHHHHHhhccceEEEeccchHHHHHHH-HHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeee
Confidence 9999999999999999999999999999 899999888766677789999999999999999999999999999999999
Q ss_pred cccCCcCHHHHHHHHHHHHHccchhhhcc
Q 028315 157 SAKNTEDVKQCFKDLLYKILEVPSLLEQG 185 (210)
Q Consensus 157 sa~~~~~i~~l~~~i~~~~~~~~~~~~~~ 185 (210)
||-+|.||++..+.++..++++.+..-+.
T Consensus 162 SA~tg~Nv~kave~LldlvM~Rie~~v~~ 190 (219)
T KOG0081|consen 162 SACTGTNVEKAVELLLDLVMKRIEQCVEK 190 (219)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998877755443
No 76
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=3.1e-31 Score=189.75 Aligned_cols=159 Identities=64% Similarity=1.030 Sum_probs=141.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|+|||||++++.+..+.. ..++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988766 7788888887777778888899999999999999989999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|++++.+++.+. .|...+.......+.|+++|+||+|+. ......++...+....+++++++||++|.|+++++++++
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 81 DVTRRDTFTNLE-TWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred ECCCHHHHHhHH-HHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 999999999988 588888777656789999999999996 345667778888888899999999999999999999988
Q ss_pred HH
Q 028315 173 YK 174 (210)
Q Consensus 173 ~~ 174 (210)
+.
T Consensus 159 ~~ 160 (161)
T cd01863 159 EK 160 (161)
T ss_pred Hh
Confidence 75
No 77
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.7e-31 Score=195.73 Aligned_cols=156 Identities=28% Similarity=0.534 Sum_probs=137.8
Q ss_pred EcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCH
Q 028315 19 IGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97 (210)
Q Consensus 19 ~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (210)
+|.+|||||||+++++.+.+.. +.++.+.++....+.+++..+.+.+|||+|++.|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 6999999999999999888876 788999899888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
.+|+.+. .|+..+.... .+.|+++|+||+|+.. +.+..+. ..++...++.|++|||++|.||+++|.+|.+.+.+
T Consensus 81 ~S~~~i~-~w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 81 VTYKNVP-NWHRDLVRVC--ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred HHHHHHH-HHHHHHHHhC--CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999998 7888887654 5799999999999854 3455443 46777788999999999999999999999999876
Q ss_pred cc
Q 028315 178 VP 179 (210)
Q Consensus 178 ~~ 179 (210)
..
T Consensus 156 ~~ 157 (200)
T smart00176 156 DP 157 (200)
T ss_pred cc
Confidence 53
No 78
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=3.6e-31 Score=191.80 Aligned_cols=159 Identities=30% Similarity=0.542 Sum_probs=136.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|+|||||++++..+.+.. +.++... .....+.+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 589999999999999999999998866 5555543 33445677888899999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------CccCHHHHHHHHHHcCC-eEEEeccc
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE------------RAVTREEGMILAQEHKC-LFLECSAK 159 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~ 159 (210)
|++++.+|+.+...|...+... ..+.|+++|+||+|+.+. ..+..+++..++...+. ++++|||+
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 157 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL 157 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence 9999999999987788887654 467999999999998543 35667788888888886 79999999
Q ss_pred CCcCHHHHHHHHHHHH
Q 028315 160 NTEDVKQCFKDLLYKI 175 (210)
Q Consensus 160 ~~~~i~~l~~~i~~~~ 175 (210)
+|.|++++|+.+++.+
T Consensus 158 ~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 158 TQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999998875
No 79
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=3.4e-31 Score=191.86 Aligned_cols=157 Identities=30% Similarity=0.522 Sum_probs=134.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+|++++|++|+|||||++++.++.+.. +.++. .+.......+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999888877 44444 4555566778888899999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CCccCHHHHHHHHHHcCC-eEEEeccc
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS------------ERAVTREEGMILAQEHKC-LFLECSAK 159 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~ 159 (210)
|++++.+|+.+...|...+.... .+.|+++|+||.|+.. .+.+..+++..++...+. +++++||+
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~ 157 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN--PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSAL 157 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCC
Confidence 99999999998767887776432 5689999999999863 356777888899988887 89999999
Q ss_pred CCcCHHHHHHHHHH
Q 028315 160 NTEDVKQCFKDLLY 173 (210)
Q Consensus 160 ~~~~i~~l~~~i~~ 173 (210)
+|.|++++|+.++-
T Consensus 158 ~~~~v~~lf~~~~~ 171 (173)
T cd04130 158 TQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999988764
No 80
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=6.1e-31 Score=190.08 Aligned_cols=165 Identities=37% Similarity=0.642 Sum_probs=141.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|+|||||++++.+..+.. ..++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999988766 6677777777777788888899999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcC-CeEEEecccCCcCHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYST---NQDCVKILVGNKVDRDSERAVTREEGMILAQEHK-CLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~l~ 168 (210)
|++++.+++... .|...+..... ..+.|+++|+||+|+..++.+..++...+....+ .+++++||++|.|++++|
T Consensus 81 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 81 DVTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF 159 (172)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence 999999998887 56665444332 2378999999999997666677777777877776 789999999999999999
Q ss_pred HHHHHHHHccc
Q 028315 169 KDLLYKILEVP 179 (210)
Q Consensus 169 ~~i~~~~~~~~ 179 (210)
+++.+.+.+..
T Consensus 160 ~~i~~~~~~~~ 170 (172)
T cd01862 160 ETIARKALEQE 170 (172)
T ss_pred HHHHHHHHhcc
Confidence 99999888653
No 81
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=3.8e-31 Score=188.64 Aligned_cols=154 Identities=20% Similarity=0.337 Sum_probs=128.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEe
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYD 93 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (210)
+||+++|+.|||||||+.++..+.+....++.+..+ ...+.+++..+.+.+|||+|++. ..+++.+|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 489999999999999999999988877433334343 45677888889999999999975 346788999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC--CCCccCHHHHHHHHHHc-CCeEEEecccCCcCHHHHHHH
Q 028315 94 VTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD--SERAVTREEGMILAQEH-KCLFLECSAKNTEDVKQCFKD 170 (210)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~l~~~ 170 (210)
++++.+|+.+. .|...+.......+.|+++|+||.|+. +.+.+..+++..+++.. ++.|++|||++|.||+++|.+
T Consensus 75 ~~~~~sf~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 75 LENEASFQTVY-NLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999998 577777665544678999999999985 35778888888888776 589999999999999999999
Q ss_pred HHHH
Q 028315 171 LLYK 174 (210)
Q Consensus 171 i~~~ 174 (210)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8864
No 82
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=4.6e-31 Score=195.12 Aligned_cols=193 Identities=25% Similarity=0.387 Sum_probs=148.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEe
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYD 93 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (210)
||+++|++|||||||++++.+..+.. +.++.. ......+.+.+..+.+.+||+||+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 68999999999999999999988877 445543 4455566777888999999999999998888889999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-CCccCHHHHHHHHH-HcCCeEEEecccCCcCHHHHHHHH
Q 028315 94 VTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS-ERAVTREEGMILAQ-EHKCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~l~~~i 171 (210)
++++.+++.+. .|...+.......+.|+++|+||+|+.. .+.+..++...... .++.+++++||++|.|++++|+++
T Consensus 80 ~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 158 (198)
T cd04147 80 VDDPESFEEVE-RLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKEL 158 (198)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHH
Confidence 99999999998 6666655554346799999999999865 35555545444433 456789999999999999999999
Q ss_pred HHHHHccchhhhcccccccccccchhhhhhhcCCCCCCC
Q 028315 172 LYKILEVPSLLEQGSAVVKNQILKQKEVQESARGGNCCS 210 (210)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 210 (210)
.+.+...+...+..+...+... ...+...+.++.+.|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 196 (198)
T cd04147 159 LRQANLPYNLSPALRRRRESLP-SEIQRRPPMNKTNSCS 196 (198)
T ss_pred HHHhhcccccchhhHHHHhhcc-HhhhcCCCCCCCCccc
Confidence 9988765555554433333333 3355555666666664
No 83
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=5.4e-31 Score=189.04 Aligned_cols=159 Identities=31% Similarity=0.489 Sum_probs=137.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC--CCCC-CCCceeeEEEEEEEEEC-CeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISN--SVHD-PSPTIGVDFKIKLLTVG-GKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~--~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
+||+++|++|||||||++++... .+.. +.++.+.++....+.++ +..+.+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 4544 77888888877766665 56799999999999999888999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.....+...+...+....+.+++++||++|.|++++|+
T Consensus 81 ~v~d~~~~~s~~~~~-~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 157 (164)
T cd04101 81 LVYDVSNKASFENCS-RWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFE 157 (164)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHH
Confidence 999999999999887 7777766543 5689999999999977777777777777777888999999999999999999
Q ss_pred HHHHHH
Q 028315 170 DLLYKI 175 (210)
Q Consensus 170 ~i~~~~ 175 (210)
++.+.+
T Consensus 158 ~l~~~~ 163 (164)
T cd04101 158 SLARAF 163 (164)
T ss_pred HHHHHh
Confidence 998865
No 84
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=6.1e-31 Score=197.28 Aligned_cols=168 Identities=26% Similarity=0.339 Sum_probs=139.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCC-C-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhc-cccEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVH-D-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYR-GAHGIIL 90 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~d~~i~ 90 (210)
+||+++|++|||||||+++|..+.+. . +.++.+.++....+.+++..+.+.+|||||++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999888875 3 55555556777777888889999999999998 223445566 8999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKD 170 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~ 170 (210)
|||++++.+|+.+. .|...+.......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus 79 V~d~td~~S~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 79 VYSVTDRSSFERAS-ELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999888 67776665543467999999999999887788888888888888899999999999999999999
Q ss_pred HHHHHHccchhhhc
Q 028315 171 LLYKILEVPSLLEQ 184 (210)
Q Consensus 171 i~~~~~~~~~~~~~ 184 (210)
+++.+.......+.
T Consensus 158 l~~~~~~~~~~~~~ 171 (221)
T cd04148 158 IVRQIRLRRDSKEK 171 (221)
T ss_pred HHHHHHhhhccccc
Confidence 99998755544333
No 85
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=1e-30 Score=186.95 Aligned_cols=160 Identities=36% Similarity=0.669 Sum_probs=139.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|+|||||++++.+..+.. ..++...+.....+...+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999988766 5556666666666677777889999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|++++.+++.+. .|...+.... ..+.|+++++||+|+...+.+..++...+....+.+++++|++++.|++++++++.
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 81 DITDADSFQKVK-KWIKELKQMR-GNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999988 6777766555 34789999999999987777777778888888899999999999999999999998
Q ss_pred HHH
Q 028315 173 YKI 175 (210)
Q Consensus 173 ~~~ 175 (210)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04123 159 KRM 161 (162)
T ss_pred HHh
Confidence 765
No 86
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=5.9e-31 Score=189.14 Aligned_cols=160 Identities=33% Similarity=0.510 Sum_probs=134.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc-cccchhhhhccccEEEEEE
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER-FGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~i~v~ 92 (210)
||+++|++|+|||||+++++...+.. +.++....+ .....+++..+.+.+|||||++. +......+++.+|++++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 58999999999999999999887765 555554333 44557788889999999999885 3455677899999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCc-CHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTE-DVKQCFKD 170 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~l~~~ 170 (210)
|++++.+|+.+. .|...+..... ..+.|+++|+||+|+...+.+..+++..++...+.+|+++||++|. |++++|.+
T Consensus 80 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 80 SITDRSSFDEIS-QLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred ECCCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence 999999999998 67777766542 4579999999999997777788888888898889999999999994 99999999
Q ss_pred HHHHHH
Q 028315 171 LLYKIL 176 (210)
Q Consensus 171 i~~~~~ 176 (210)
+.+.+.
T Consensus 159 l~~~~~ 164 (165)
T cd04146 159 LCREVR 164 (165)
T ss_pred HHHHHh
Confidence 998764
No 87
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=9.6e-31 Score=188.74 Aligned_cols=161 Identities=20% Similarity=0.228 Sum_probs=136.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCC-C-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVH-D-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
+.+||+++|.+|||||||+++|.++.+. . +.||.+..+....+.+++..+.+.+||++|.+.+...+..+++++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 5799999999999999999999999986 4 7788888777677778888889999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEecccCCcCHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC-LFLECSAKNTEDVKQCF 168 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~l~ 168 (210)
+|+|++++.+++.+. .|...+.. ..+.|+++|+||+|+.+.+.....+...+.+.++. .++++||++|.|++++|
T Consensus 83 lv~d~~~~~s~~~~~-~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 83 LVYDSSDPKSFSYCA-EVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF 158 (169)
T ss_pred EEEeCCCHHHHHHHH-HHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence 999999999999887 56554422 24789999999999965554444455667777776 47999999999999999
Q ss_pred HHHHHHHH
Q 028315 169 KDLLYKIL 176 (210)
Q Consensus 169 ~~i~~~~~ 176 (210)
+.+.+.+.
T Consensus 159 ~~l~~~~~ 166 (169)
T cd01892 159 TKLATAAQ 166 (169)
T ss_pred HHHHHHhh
Confidence 99999876
No 88
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=3.5e-30 Score=185.73 Aligned_cols=163 Identities=42% Similarity=0.780 Sum_probs=142.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
.+.++|+++|++|+|||||++++..+.+.. +.++.+.+.....+.+.+..+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 457999999999999999999998877765 6777777777777788888899999999999999988899999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+|+|++++.+++.+. .|+..+.... ..+.|+++|+||+|+.+.+.+..+....+......+++++||++|.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~-~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 162 (169)
T cd04114 85 LTYDITCEESFRCLP-EWLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFL 162 (169)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH
Confidence 999999999999888 6877776554 45789999999999987777777777777777778899999999999999999
Q ss_pred HHHHHH
Q 028315 170 DLLYKI 175 (210)
Q Consensus 170 ~i~~~~ 175 (210)
++.+.+
T Consensus 163 ~i~~~~ 168 (169)
T cd04114 163 DLACRL 168 (169)
T ss_pred HHHHHh
Confidence 998765
No 89
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.98 E-value=2.7e-30 Score=185.22 Aligned_cols=162 Identities=31% Similarity=0.553 Sum_probs=135.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|+|||||++++....+.. +.++.... ......+++..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999888766 44554433 3445577888899999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|++++.+|..... |...+.......+.|+++|+||+|+...+....++...+...++++++++||++|.|++++|.++.
T Consensus 80 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 80 SITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999984 544444443346799999999999976555666777778888889999999999999999999999
Q ss_pred HHHHc
Q 028315 173 YKILE 177 (210)
Q Consensus 173 ~~~~~ 177 (210)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T cd04139 159 REIRQ 163 (164)
T ss_pred HHHHh
Confidence 87753
No 90
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.98 E-value=1.7e-30 Score=197.30 Aligned_cols=161 Identities=28% Similarity=0.488 Sum_probs=135.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|.+|||||||+++|+++.+.. +.++.+ ++....+.+++..+.+.||||+|++.|...+..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988876 566665 555566788888999999999999999888888899999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhc--------cCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH-cCCeEEEecccCCcC
Q 028315 93 DVTRRETFTNLSSVWAKEVELYS--------TNQDCVKILVGNKVDRDSERAVTREEGMILAQE-HKCLFLECSAKNTED 163 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~ 163 (210)
|++++.+|+.+. .|...+.... ...+.|+++|+||+|+...+.+..++...+... .++.++++||++|.|
T Consensus 80 dv~~~~Sf~~i~-~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~g 158 (247)
T cd04143 80 SLDNRESFEEVC-RLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSN 158 (247)
T ss_pred eCCCHHHHHHHH-HHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence 999999999998 5655554321 135789999999999976667777777776653 467899999999999
Q ss_pred HHHHHHHHHHHHH
Q 028315 164 VKQCFKDLLYKIL 176 (210)
Q Consensus 164 i~~l~~~i~~~~~ 176 (210)
++++|++|.+.+.
T Consensus 159 I~elf~~L~~~~~ 171 (247)
T cd04143 159 LDEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998653
No 91
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.9e-31 Score=175.00 Aligned_cols=172 Identities=44% Similarity=0.735 Sum_probs=156.8
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcccc
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAH 86 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (210)
-...|.+|.+++|+-|+|||+|++.|...+|.. -..+++.++....+.+.+..+.+++|||+|+++|+...+.+++.+.
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaa 85 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 85 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 345688999999999999999999999999877 7788999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHH
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 166 (210)
+.++|||++.+.++..+. .|+.-..... +++.-+++++||.|+..++.+..+++..|+++.|..+.++||++|.|+++
T Consensus 86 galmvyditrrstynhls-swl~dar~lt-npnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nved 163 (215)
T KOG0097|consen 86 GALMVYDITRRSTYNHLS-SWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVED 163 (215)
T ss_pred ceeEEEEehhhhhhhhHH-HHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHH
Confidence 999999999999999888 7877766555 67788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccchh
Q 028315 167 CFKDLLYKILEVPSL 181 (210)
Q Consensus 167 l~~~i~~~~~~~~~~ 181 (210)
.|-...+.+.++-+.
T Consensus 164 afle~akkiyqniqd 178 (215)
T KOG0097|consen 164 AFLETAKKIYQNIQD 178 (215)
T ss_pred HHHHHHHHHHHhhhc
Confidence 998888877766553
No 92
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=8.8e-31 Score=188.73 Aligned_cols=155 Identities=23% Similarity=0.353 Sum_probs=123.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
..+||+++|++|||||||++++..+.+..+.|+.+.++.. +....+.+++|||||++.+...+..+++.+|++++|
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEE----EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4589999999999999999999887776677777765542 223468899999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH-----cCCeEEEecccCCcCHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQE-----HKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~ 166 (210)
||++++.++.....+|...+.... ..+.|+++|+||+|+.+ .+..+++..+... ....++++||++|.|+++
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDRE-MRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHh-hcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 999999999888866666654322 25689999999999864 2455555554321 234689999999999999
Q ss_pred HHHHHHH
Q 028315 167 CFKDLLY 173 (210)
Q Consensus 167 l~~~i~~ 173 (210)
+|+||.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 93
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=6.4e-30 Score=181.82 Aligned_cols=157 Identities=54% Similarity=0.890 Sum_probs=140.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++++|||||++++.+..+.. +.++.+.++.......+.....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999999998887 6888898888888888888899999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|++++.+++.+. .|...+.... ....|+++++||+|+........++...+....+.+++++||+++.|+++++++|.
T Consensus 81 d~~~~~~~~~~~-~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLD-KWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999888 5777776554 35789999999999975566777888888888899999999999999999999986
No 94
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.9e-30 Score=189.52 Aligned_cols=169 Identities=25% Similarity=0.361 Sum_probs=133.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTV-GGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
.+||+++|++|||||||++++....+....|+.+.+.....+.. ++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 82 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV 82 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999998887776677776665555444 34678999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH--H----cCCeEEEecccCCcCHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ--E----HKCLFLECSAKNTEDVK 165 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~----~~~~~~~~sa~~~~~i~ 165 (210)
+|++++.+++.+. .|+..+.......+.|+++|+||+|+... ...++...+.. . .+++++++||++|.|++
T Consensus 83 ~D~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 83 VDSVDVERMEEAK-TELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EECCCHHHHHHHH-HHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 9999999888877 55555444333467899999999998542 33444443332 1 12468999999999999
Q ss_pred HHHHHHHHHHHccchhhhc
Q 028315 166 QCFKDLLYKILEVPSLLEQ 184 (210)
Q Consensus 166 ~l~~~i~~~~~~~~~~~~~ 184 (210)
+++++|.+.+.+.++..+.
T Consensus 160 ~l~~~l~~~l~~~~~~~~~ 178 (183)
T cd04152 160 EGLEKLYEMILKRRKMLRQ 178 (183)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 9999999999866665554
No 95
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=2.2e-30 Score=186.90 Aligned_cols=159 Identities=27% Similarity=0.441 Sum_probs=126.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDV 94 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (210)
||+++|.++||||||++++.+..+..+.+|.+..... ++...+.+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~----~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVET----VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEE----EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 6899999999999999999988776677777655542 233467899999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcC------CeEEEecccCCcCHHHHH
Q 028315 95 TRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHK------CLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~l~ 168 (210)
+++.++..+..++...+.... ..+.|+++|+||+|+.+ .++.++.+.+....+ +.++++||++|.|++++|
T Consensus 77 s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999988855554443322 34689999999999954 355666665543221 258899999999999999
Q ss_pred HHHHHHHHccch
Q 028315 169 KDLLYKILEVPS 180 (210)
Q Consensus 169 ~~i~~~~~~~~~ 180 (210)
+||.+.+.+..+
T Consensus 154 ~~l~~~~~~~~~ 165 (169)
T cd04158 154 DWLSRQLVAAGV 165 (169)
T ss_pred HHHHHHHhhccc
Confidence 999998887654
No 96
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=6.3e-31 Score=190.73 Aligned_cols=158 Identities=22% Similarity=0.353 Sum_probs=122.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
...+||+++|++|||||||++++..+.+..+.||.+.++... .. ..+.+++|||||++.+...+..+++++|++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~--~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETV--TY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEE--EE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 446999999999999999999998777766677777655432 22 45789999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH-----HcCCeEEEecccCCcCHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ-----EHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 165 (210)
|+|++++.+++.....|...+.... ..+.|++||+||.|+.+.. ..++...... ...+.++++||++|.|++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDE-LRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHh-hcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 9999999999988855555554322 2568999999999986432 3333222211 123357789999999999
Q ss_pred HHHHHHHHHH
Q 028315 166 QCFKDLLYKI 175 (210)
Q Consensus 166 ~l~~~i~~~~ 175 (210)
++|+||.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 97
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1e-29 Score=184.30 Aligned_cols=159 Identities=29% Similarity=0.546 Sum_probs=133.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
.||+++|++|||||||+++|.+..+.. +.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 589999999999999999999988876 6666665543 35577888899999999999999888888899999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------CccCHHHHHHHHHHcCC-eEEEeccc
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE------------RAVTREEGMILAQEHKC-LFLECSAK 159 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~ 159 (210)
|++++.+|+.+...|...+.... .+.|+++|+||.|+.+. ..+...+.+.++...+. ++++|||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 99999999998767888776543 57899999999998543 23456677777777765 79999999
Q ss_pred CCcCHHHHHHHHHHHH
Q 028315 160 NTEDVKQCFKDLLYKI 175 (210)
Q Consensus 160 ~~~~i~~l~~~i~~~~ 175 (210)
+|.|++++|.++.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998764
No 98
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=4e-30 Score=187.32 Aligned_cols=160 Identities=23% Similarity=0.359 Sum_probs=124.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
...+||+++|.++||||||++++..+.+..+.||.+.+... ++...+.+++||+||++.+..+|..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~----~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEE----EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45689999999999999999999887776677777765542 33346789999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHc-----CCeEEEecccCCcCHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEH-----KCLFLECSAKNTEDVK 165 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~sa~~~~~i~ 165 (210)
|+|++++.++..+...+...+.... ..+.|++|++||+|+.+. ...++......-. .+.++++||++|.|++
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHh-hCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 9999999999888755544443221 357899999999998654 3333333222111 1246689999999999
Q ss_pred HHHHHHHHHHHc
Q 028315 166 QCFKDLLYKILE 177 (210)
Q Consensus 166 ~l~~~i~~~~~~ 177 (210)
++|+||.+.+..
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 99
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=2.5e-29 Score=184.28 Aligned_cols=165 Identities=31% Similarity=0.493 Sum_probs=137.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
.||+++|++|+|||||++++..+.+.. +.++....+. ..+.+++..+.+.+||++|++.+......+++.+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 589999999999999999998777765 5555544433 35567778889999999999988877777889999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC----------CCccCHHHHHHHHHHcCC-eEEEecccCC
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS----------ERAVTREEGMILAQEHKC-LFLECSAKNT 161 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~ 161 (210)
|+++.++|+.+...|...+.... .+.|+++|+||+|+.. .+.+..+++..+++..+. ++|+|||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 99999999999867888886544 4699999999999854 234556778888888885 7999999999
Q ss_pred cCHHHHHHHHHHHHHccchh
Q 028315 162 EDVKQCFKDLLYKILEVPSL 181 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~~~~~~ 181 (210)
.|++++|+++.+.+...++.
T Consensus 159 ~~v~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 159 EGVDDVFEAATRAALLVRKS 178 (187)
T ss_pred CCHHHHHHHHHHHHhcccCc
Confidence 99999999999988766653
No 100
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=2.9e-29 Score=181.11 Aligned_cols=157 Identities=34% Similarity=0.594 Sum_probs=132.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+||+++|++|+|||||+++|.+..+.. +.++.. +.........+..+.+++||+||++.+.......++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 589999999999999999999998855 445544 344455577788899999999999998888888899999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC-----------ccCHHHHHHHHHHcCC-eEEEecccC
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER-----------AVTREEGMILAQEHKC-LFLECSAKN 160 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~sa~~ 160 (210)
|++++.+|.....+|...+.... .+.|+++|+||+|+.+.. .+..++...+...++. +++++||++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALT 157 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCC
Confidence 99999999888878888777654 479999999999986554 3356677777777877 899999999
Q ss_pred CcCHHHHHHHHHH
Q 028315 161 TEDVKQCFKDLLY 173 (210)
Q Consensus 161 ~~~i~~l~~~i~~ 173 (210)
|.|++++|+++.+
T Consensus 158 ~~gi~~l~~~i~~ 170 (171)
T cd00157 158 QEGVKEVFEEAIR 170 (171)
T ss_pred CCCHHHHHHHHhh
Confidence 9999999999875
No 101
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.1e-30 Score=186.72 Aligned_cols=153 Identities=23% Similarity=0.383 Sum_probs=118.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEe
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYD 93 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (210)
+||+++|.++||||||++++..+.+..+.|+.+.+... +. ...+.+.+|||||++.+...+..+++++|++++|+|
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~--~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEE--EE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 48999999999999999999888777677777765432 22 246889999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHH-HHHHH----HcCCeEEEecccCCcCHHHHH
Q 028315 94 VTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEG-MILAQ----EHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~sa~~~~~i~~l~ 168 (210)
++++.++..+...|...+.... ....|+++++||+|+.+. ...++. ..+.. ...+.++++||++|.|++++|
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDE-LRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHH-hcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 9999999988866665554322 346899999999998543 222222 22211 123457899999999999999
Q ss_pred HHHHH
Q 028315 169 KDLLY 173 (210)
Q Consensus 169 ~~i~~ 173 (210)
+||.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 102
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=8.1e-30 Score=185.94 Aligned_cols=161 Identities=25% Similarity=0.390 Sum_probs=124.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
..+||+++|++|||||||++++..+.+..+.||.+.++.. ++...+.+++|||||++.+...+..+++++|++|+|
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~----~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVET----VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEE----EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4689999999999999999999888777666777765542 223468899999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH-----HcCCeEEEecccCCcCHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ-----EHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~ 166 (210)
+|++++.++......+...+.... ....|++||+||.|+.+. +..++...... ...+.++++||++|.|+++
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDE-LRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHh-hcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 999999999988865655554322 346899999999998542 23332222111 1123577999999999999
Q ss_pred HHHHHHHHHHccc
Q 028315 167 CFKDLLYKILEVP 179 (210)
Q Consensus 167 l~~~i~~~~~~~~ 179 (210)
+|+||.+.+.+..
T Consensus 169 ~~~~l~~~i~~~~ 181 (182)
T PTZ00133 169 GLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
No 103
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=4.1e-29 Score=182.00 Aligned_cols=165 Identities=36% Similarity=0.571 Sum_probs=137.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
.||+++|++|+|||||++++.+..+.. +.++....+ .....+.+..+.+.+|||||++.+...+..++..+|++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 689999999999999999999888765 555554433 344566777889999999999999989999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|+++..+++.+..+|...+... ...+.|+++|+||+|+...+.+..++...+...++.+++++||+++.|+.++|.++.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDML-GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999986555555543 246789999999999976666777677777788888999999999999999999999
Q ss_pred HHHHccch
Q 028315 173 YKILEVPS 180 (210)
Q Consensus 173 ~~~~~~~~ 180 (210)
+.+...+.
T Consensus 160 ~~~~~~~~ 167 (180)
T cd04137 160 EEIEKVEN 167 (180)
T ss_pred HHHHHhcC
Confidence 98875543
No 104
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=3.7e-29 Score=178.49 Aligned_cols=158 Identities=38% Similarity=0.649 Sum_probs=134.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEe
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYD 93 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (210)
||+++|++|+|||||++++++..+.. +.++.. +.......+.+..+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 68999999999999999999887655 445544 5555566677778999999999999998899999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHHH
Q 028315 94 VTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLY 173 (210)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~ 173 (210)
+++++++..+.. |...+.........|+++|+||+|+...+.+..+++..+...++.+++++||+++.|++++|++|.+
T Consensus 80 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 80 ITDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence 999999999884 4444444442368999999999999876777888888888888899999999999999999999987
Q ss_pred H
Q 028315 174 K 174 (210)
Q Consensus 174 ~ 174 (210)
.
T Consensus 159 ~ 159 (160)
T cd00876 159 E 159 (160)
T ss_pred h
Confidence 5
No 105
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=2.1e-29 Score=184.32 Aligned_cols=167 Identities=36% Similarity=0.559 Sum_probs=149.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
..+||+++|.+|+|||+|..++.++.|.+ +.|++. +.+...+.+++..+.+.++||+|++.+..+...+++++|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 46899999999999999999999999988 566665 7777888999999999999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKD 170 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~ 170 (210)
||+++++.||+.+.. ++..+.+.......|+++|+||+|+.+.+.+..++++.++..++++++++||+.+.+++++|..
T Consensus 81 Vysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~ 159 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYE 159 (196)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHH
Confidence 999999999999994 5555544444567899999999999998999999999999999999999999999999999999
Q ss_pred HHHHHHccch
Q 028315 171 LLYKILEVPS 180 (210)
Q Consensus 171 i~~~~~~~~~ 180 (210)
|++.+...+.
T Consensus 160 L~r~~~~~~~ 169 (196)
T KOG0395|consen 160 LVREIRLPRE 169 (196)
T ss_pred HHHHHHhhhc
Confidence 9998876333
No 106
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=1.7e-29 Score=183.00 Aligned_cols=157 Identities=24% Similarity=0.360 Sum_probs=122.7
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
.+..++|+++|++|+|||||++++.+..+..+.++.+.... .+.++ .+.+.+|||||++.+...+..+++.+|+++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIK--TLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 35679999999999999999999998866667777764333 33343 578999999999998889999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH-----HcCCeEEEecccCCcCH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ-----EHKCLFLECSAKNTEDV 164 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i 164 (210)
+|+|++++.++.....++...+.... ..+.|+++|+||+|+.+.. ..++...+.. ..+++++++||++|.|+
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEER-LAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 99999999999888744444433222 3679999999999986543 3444444432 23568999999999999
Q ss_pred HHHHHHHHH
Q 028315 165 KQCFKDLLY 173 (210)
Q Consensus 165 ~~l~~~i~~ 173 (210)
+++|+++.+
T Consensus 164 ~~l~~~l~~ 172 (173)
T cd04154 164 LQGIDWLVD 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999864
No 107
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=2.9e-31 Score=175.47 Aligned_cols=164 Identities=36% Similarity=0.632 Sum_probs=150.0
Q ss_pred EEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCC
Q 028315 18 LIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVT 95 (210)
Q Consensus 18 i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (210)
++|++++|||+|+-|+..+.|-. ...+.++++-.+.+..++..+.+++|||+|+++|++....+++.+|+.+++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999999988777655 6788899999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHHHHH
Q 028315 96 RRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175 (210)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~ 175 (210)
+..+|++.. .|+..+..+. +..+.+.+++||+|+.+++.+..++.+.+++.+++|++++||++|.|++..|-.|.+.+
T Consensus 82 nkasfdn~~-~wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 82 NKASFDNCQ-AWLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred cchhHHHHH-HHHHHHHHHH-HhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence 999999999 8999988877 56778899999999999999999999999999999999999999999999999999998
Q ss_pred Hccchhhh
Q 028315 176 LEVPSLLE 183 (210)
Q Consensus 176 ~~~~~~~~ 183 (210)
.+..-..+
T Consensus 160 ~k~~~~~~ 167 (192)
T KOG0083|consen 160 KKLKMGAP 167 (192)
T ss_pred HHhccCCC
Confidence 76554433
No 108
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=6.6e-29 Score=178.67 Aligned_cols=161 Identities=30% Similarity=0.405 Sum_probs=126.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEe
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYD 93 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (210)
+||+++|.+|||||||+++|.++.+....++..... .....+++..+.+.+|||||.+.+...+..++..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 489999999999999999999988866444333222 2333556678899999999998887777788899999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC--HHHHHHHHHHc-C-CeEEEecccCCcCHHHHHH
Q 028315 94 VTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT--REEGMILAQEH-K-CLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~-~-~~~~~~sa~~~~~i~~l~~ 169 (210)
++++.+++.+...|...+.... .+.|+++|+||+|+.+..... .++...+...+ + .+++++||++|.|++++|.
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 9999999998767888877654 478999999999997654321 23333333333 2 3799999999999999999
Q ss_pred HHHHHHHc
Q 028315 170 DLLYKILE 177 (210)
Q Consensus 170 ~i~~~~~~ 177 (210)
.+.+.+..
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887753
No 109
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=181.67 Aligned_cols=167 Identities=34% Similarity=0.557 Sum_probs=151.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEEC-CeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVG-GKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
.+.+|++++|+..+|||+|+-.+..+.|+. +.||.. +-+...+.++ +..+.+.+|||+|++.|+.++...|..+|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 467999999999999999999999999988 888887 5566667884 9999999999999999999998899999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------CccCHHHHHHHHHHcCC-eEEE
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE------------RAVTREEGMILAQEHKC-LFLE 155 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~ 155 (210)
++||++.++.+|+++...|.+.+..+. ++.|+++||+|.||.+. ..+..++++.+++..|+ .|++
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~E 158 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLE 158 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeee
Confidence 999999999999999999999999887 89999999999999742 46778889999999995 5999
Q ss_pred ecccCCcCHHHHHHHHHHHHHccch
Q 028315 156 CSAKNTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 156 ~sa~~~~~i~~l~~~i~~~~~~~~~ 180 (210)
|||++..|++++|+..+..++..++
T Consensus 159 cSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 159 CSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred ehhhhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999999987665
No 110
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=5.9e-28 Score=180.70 Aligned_cols=176 Identities=28% Similarity=0.497 Sum_probs=147.7
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcccc
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAH 86 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (210)
......+||+++|++|||||||++++..+.+.. +.++.+.++....+..++..+.+.+|||+|++.+...+..+++.++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 344567999999999999999999988888765 8899998888877777888999999999999999989999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHH
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 166 (210)
++++|||+++..+|..+. .|...+.... .+.|+++++||+|+.+. .+..+ ...+....++.++++||++|.|+++
T Consensus 84 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~--~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVP-NWHRDIVRVC--ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEK 158 (215)
T ss_pred EEEEEEECcCHHHHHHHH-HHHHHHHHhC--CCCCEEEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999998 6777665543 56899999999998643 33333 3456667788999999999999999
Q ss_pred HHHHHHHHHHccchhhhccccc
Q 028315 167 CFKDLLYKILEVPSLLEQGSAV 188 (210)
Q Consensus 167 l~~~i~~~~~~~~~~~~~~~~~ 188 (210)
.|.+|.+.+...+..+-.+++.
T Consensus 159 ~f~~ia~~l~~~p~~~~ldEp~ 180 (215)
T PTZ00132 159 PFLWLARRLTNDPNLVFVGAPA 180 (215)
T ss_pred HHHHHHHHHhhcccceecCCcc
Confidence 9999999999887766555444
No 111
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=3.5e-29 Score=179.72 Aligned_cols=151 Identities=23% Similarity=0.334 Sum_probs=119.8
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeC
Q 028315 16 ILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDV 94 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (210)
|+++|++|||||||+++|.+..+.. +.|+.+... ..++...+.+.+||+||++.+...+..+++++|++++|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 7899999999999999999887655 667776543 24455678999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCH----HHHHHHHHHcCCeEEEecccC------CcCH
Q 028315 95 TRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTR----EEGMILAQEHKCLFLECSAKN------TEDV 164 (210)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~sa~~------~~~i 164 (210)
+++.++.... .|...+... ..+.|+++|+||.|+...+.+.. .+...++...++.++++||++ ++||
T Consensus 78 t~~~s~~~~~-~~l~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v 154 (164)
T cd04162 78 ADSERLPLAR-QELHQLLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV 154 (164)
T ss_pred CCHHHHHHHH-HHHHHHHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence 9999998887 444444322 26799999999999976553321 123444555677899999998 9999
Q ss_pred HHHHHHHHH
Q 028315 165 KQCFKDLLY 173 (210)
Q Consensus 165 ~~l~~~i~~ 173 (210)
+++|+.++.
T Consensus 155 ~~~~~~~~~ 163 (164)
T cd04162 155 KDLLSQLIN 163 (164)
T ss_pred HHHHHHHhc
Confidence 999988763
No 112
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=2.6e-28 Score=176.90 Aligned_cols=155 Identities=25% Similarity=0.412 Sum_probs=121.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
..+||+++|++|+|||||++++..+.+..+.++.+.++.. ... ..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEE--IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEE--EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 3589999999999999999999988887777777766542 223 357899999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHH-HHHH----HHcCCeEEEecccCCcCHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEG-MILA----QEHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~sa~~~~~i~~ 166 (210)
+|++++.++......+...+.... ..+.|+++++||+|+... ...++. ..+. ...+++++++||++|.|+++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 999999988877755555544322 356899999999998542 333332 2222 22345799999999999999
Q ss_pred HHHHHHH
Q 028315 167 CFKDLLY 173 (210)
Q Consensus 167 l~~~i~~ 173 (210)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999865
No 113
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=8.1e-29 Score=176.80 Aligned_cols=152 Identities=26% Similarity=0.359 Sum_probs=116.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDV 94 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (210)
||+++|++++|||||++++..+.+....++.+.+... ++...+.+++|||||++.+...+..+++.+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVET----VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEE----EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 6899999999999999999887776666666655432 223457899999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHH-HHHH----HcCCeEEEecccCCcCHHHHHH
Q 028315 95 TRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGM-ILAQ----EHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+++.++......|...+.... ..+.|+++|+||+|+.+.. ...+.. .+.. ..+.+++++||++|.|++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEE-LKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchh-hcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 999888776655655554322 3578999999999986432 222222 1211 1234699999999999999999
Q ss_pred HHHH
Q 028315 170 DLLY 173 (210)
Q Consensus 170 ~i~~ 173 (210)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9875
No 114
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=6e-28 Score=177.33 Aligned_cols=157 Identities=23% Similarity=0.328 Sum_probs=123.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.+.++|+++|++|||||||++++.+..+..+.++.+.... .+.++ +..+.+||+||++.+...+..+++.+|++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~--~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSE--ELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3568999999999999999999998887666666665433 33344 4678999999999988888999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH----------------cCCeEE
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQE----------------HKCLFL 154 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~ 154 (210)
|+|+++..++.....++...+.. ....+.|+++++||+|+.+ .+..++.+.+... ....++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 99999998888777444444432 2235689999999999854 4555555555432 224689
Q ss_pred EecccCCcCHHHHHHHHHHH
Q 028315 155 ECSAKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 155 ~~sa~~~~~i~~l~~~i~~~ 174 (210)
+|||++|.|++++|.||.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999875
No 115
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=2.3e-27 Score=174.75 Aligned_cols=147 Identities=29% Similarity=0.464 Sum_probs=123.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEEC-----CeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVG-----GKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
+||+++|+.+||||||++++.++.+.. +.+|.+.++....+.+. +..+.+.+|||+|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999998877 77888877777666653 467899999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhc------------------cCCCCcEEEEEeCCCCCCCCccCHHH----HHHH
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYS------------------TNQDCVKILVGNKVDRDSERAVTREE----GMIL 145 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~ 145 (210)
+|+|||++++.+|+.+. .|+..+.... ...+.|+++|+||.|+.+.+.+..+. ...+
T Consensus 81 iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhH
Confidence 99999999999999998 7877775432 12468999999999997766665543 4456
Q ss_pred HHHcCCeEEEecccCC
Q 028315 146 AQEHKCLFLECSAKNT 161 (210)
Q Consensus 146 ~~~~~~~~~~~sa~~~ 161 (210)
+...+++.++.++++.
T Consensus 160 a~~~~~~~i~~~c~~~ 175 (202)
T cd04102 160 AEQGNAEEINLNCTNG 175 (202)
T ss_pred HHhcCCceEEEecCCc
Confidence 7888999999998854
No 116
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=1.2e-27 Score=173.36 Aligned_cols=158 Identities=30% Similarity=0.445 Sum_probs=128.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.+++||+++|..|||||||++++..+......||.+.+... +.+ .++.+.+||.+|+..++..|+.++..+|++|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~--i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEE--IKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEE--EEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccce--eee--CcEEEEEEeccccccccccceeeccccceeEE
Confidence 67899999999999999999999887766677777766553 333 45678999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH------HcCCeEEEecccCCcCH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ------EHKCLFLECSAKNTEDV 164 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~sa~~~~~i 164 (210)
|+|.++.+.+.+....+...+.... ..++|++|++||.|+.+. +..++...... ...+.++.|||.+|.|+
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~~-~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDPE-LKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSGG-GTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EEecccceeecccccchhhhcchhh-cccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 9999999999888866666665443 468999999999998653 44444443322 12345999999999999
Q ss_pred HHHHHHHHHHH
Q 028315 165 KQCFKDLLYKI 175 (210)
Q Consensus 165 ~~l~~~i~~~~ 175 (210)
.+.++||.+.+
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=7.4e-28 Score=172.05 Aligned_cols=153 Identities=25% Similarity=0.418 Sum_probs=117.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDV 94 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (210)
+|+++|++|||||||++++.+..+....++.+.+... +.. ...+.+.+|||||++.+...+..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~--~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEM--LQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEE--EEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 5899999999999999999998887766777655432 222 3457899999999999988899999999999999999
Q ss_pred CCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHH------HHcCCeEEEecccCCcCHHHHH
Q 028315 95 TRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILA------QEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
+++.++.....++...+.... ..+.|+++|+||+|+... ...++..... ...+.++++|||++|.|++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 78 SDEARLDESQKELKHILKNEH-IKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999988888744444443322 357999999999998542 2233332221 1224569999999999999999
Q ss_pred HHHHH
Q 028315 169 KDLLY 173 (210)
Q Consensus 169 ~~i~~ 173 (210)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 118
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=2.7e-28 Score=174.59 Aligned_cols=152 Identities=21% Similarity=0.276 Sum_probs=114.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-C-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 15 KILLIGDSGVGKSSILLSLISNSV-H-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
+|+++|++|||||||++++.+..+ . .+.|+.+.+... +....+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES----FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE----EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999988753 3 366777754432 2234678999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH-----HcCCeEEEecccCCcCHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYS--TNQDCVKILVGNKVDRDSERAVTREEGMILAQ-----EHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 165 (210)
|++++.++.... .|...+.... ...+.|+++|+||+|+.+.. ..++...... ....+++++||++|.|++
T Consensus 77 D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 77 DSSDRLRLVVVK-DELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred eCCcHHHHHHHH-HHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 999999888777 4444432221 13579999999999986532 2222222111 113358999999999999
Q ss_pred HHHHHHHH
Q 028315 166 QCFKDLLY 173 (210)
Q Consensus 166 ~l~~~i~~ 173 (210)
++|++|.+
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999864
No 119
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.96 E-value=9.3e-28 Score=171.24 Aligned_cols=152 Identities=26% Similarity=0.401 Sum_probs=120.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDV 94 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (210)
||+++|.+|+|||||++++.+..+....++.+.+.... .+ ..+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETV--EY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEE--EE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 68999999999999999999988666777777655432 22 257899999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH-----HcCCeEEEecccCCcCHHHHHH
Q 028315 95 TRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ-----EHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+++.++.....++...+.... ..+.|+++++||+|+.... ..++...... ...++++++||++|.|++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999988855555544332 4689999999999986543 2223332222 2345799999999999999999
Q ss_pred HHHH
Q 028315 170 DLLY 173 (210)
Q Consensus 170 ~i~~ 173 (210)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 120
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=7.9e-28 Score=173.22 Aligned_cols=154 Identities=21% Similarity=0.339 Sum_probs=115.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDV 94 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (210)
+|+++|++|||||||++++.+.....+.|+.+.+.. .+.. ..+.+++||+||++.+...+..+++++|++++|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 479999999999999999987733347778776533 2333 457899999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCH-HHH---HHHHHHc--CCeEEEecccCC------c
Q 028315 95 TRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTR-EEG---MILAQEH--KCLFLECSAKNT------E 162 (210)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~---~~~~~~~--~~~~~~~sa~~~------~ 162 (210)
+++.+++.+. .|+..+.......+.|+++|+||.|+.+.+.... .+. ..++... .+.+++|||++| .
T Consensus 77 s~~~s~~~~~-~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 77 SDDDRVQEVK-EILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CchhHHHHHH-HHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 9999999888 4544444332235789999999999976542111 111 1222222 245788999998 8
Q ss_pred CHHHHHHHHHH
Q 028315 163 DVKQCFKDLLY 173 (210)
Q Consensus 163 ~i~~l~~~i~~ 173 (210)
|+++.|+||.+
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 121
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=8.8e-27 Score=168.66 Aligned_cols=143 Identities=39% Similarity=0.604 Sum_probs=126.0
Q ss_pred CCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhc
Q 028315 37 SVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYS 115 (210)
Q Consensus 37 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 115 (210)
.|.+ +.+|.+.++....+.+++..+.+.||||||++.+..++..+++++|++|+|||++++.+|+.+. .|+..+....
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~-~w~~~i~~~~ 82 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNER 82 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHH-HHHHHHHHhc
Confidence 4555 7899999998888889999999999999999999999999999999999999999999999998 6777665443
Q ss_pred cCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHHHHHHccchh
Q 028315 116 TNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181 (210)
Q Consensus 116 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~ 181 (210)
..+.|+++|+||+|+...+.+..+++..++..++..++++||++|.||+++|++|.+.+.+.+..
T Consensus 83 -~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 -GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred -CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 35789999999999987777888888888888888999999999999999999999999876544
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=3.1e-27 Score=172.69 Aligned_cols=157 Identities=21% Similarity=0.268 Sum_probs=120.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.+.++|+++|.+|||||||++++.+..+..+.|+.+.+.. .+.+ .++.+.+||+||++.+...+..+++++|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE--ELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 3459999999999999999999998877666566555433 2223 35789999999999998999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH------------cCCeEEEecc
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQE------------HKCLFLECSA 158 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~sa 158 (210)
|+|++++.++......+...+... ...+.|+++|+||+|+.. .++.++....... ....+++|||
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDE-ELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCh-hhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999999888774444444322 135789999999999853 3455444432211 1224999999
Q ss_pred cCCcCHHHHHHHHHHH
Q 028315 159 KNTEDVKQCFKDLLYK 174 (210)
Q Consensus 159 ~~~~~i~~l~~~i~~~ 174 (210)
++|.|++++++||.+.
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999865
No 123
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.95 E-value=1.2e-26 Score=158.77 Aligned_cols=163 Identities=24% Similarity=0.364 Sum_probs=135.3
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
.++++++|+++|..|+||||++++|.+.......|+.+.+..+ +....+++++||.+|+..++..|+.||..+|++
T Consensus 12 ~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Ikt----l~~~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 12 LKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKT----LEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEE----EEecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 3578999999999999999999999888877788999877774 344578999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHH------HHHHHHHcCCeEEEecccCCc
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREE------GMILAQEHKCLFLECSAKNTE 162 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~sa~~~~ 162 (210)
|+|+|.+|+.++++........+.... ..+.|++|++||.|+... +..++ ...+++...++++.|||.+|+
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eer-laG~~~Lvlank~dl~~~--l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge 164 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEER-LAGAPLLVLANKQDLPGA--LSLEEISKALDLEELAKSHHWRLVKCSAVTGE 164 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhh-hcCCceEEEEecCcCccc--cCHHHHHHhhCHHHhccccCceEEEEeccccc
Confidence 999999999999988866666654322 467899999999999632 32222 223345567789999999999
Q ss_pred CHHHHHHHHHHHHHcc
Q 028315 163 DVKQCFKDLLYKILEV 178 (210)
Q Consensus 163 ~i~~l~~~i~~~~~~~ 178 (210)
++.+-++|++..+.++
T Consensus 165 ~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 165 DLLEGIDWLCDDLMSR 180 (185)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999998874
No 124
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=3.4e-27 Score=169.75 Aligned_cols=152 Identities=29% Similarity=0.450 Sum_probs=114.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCC-------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVH-------DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
||+++|++|+|||||++++.+.... .+.++.+.... .+.++ ...+.+|||||++.+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 6899999999999999999764321 13455554443 22333 5789999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH-------cCCeEEEecccC
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQE-------HKCLFLECSAKN 160 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~ 160 (210)
+++|+|++++.++.....++...+. .....+.|+++++||+|+... ...++...+... .+++++++||++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLR-NEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHh-ChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence 9999999999888887744444443 222457899999999998553 333444433322 245799999999
Q ss_pred CcCHHHHHHHHHH
Q 028315 161 TEDVKQCFKDLLY 173 (210)
Q Consensus 161 ~~~i~~l~~~i~~ 173 (210)
|.|++++++||.+
T Consensus 154 g~gv~e~~~~l~~ 166 (167)
T cd04160 154 GTGVREGIEWLVE 166 (167)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999865
No 125
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=4.5e-29 Score=173.05 Aligned_cols=176 Identities=28% Similarity=0.439 Sum_probs=162.5
Q ss_pred CCCCCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhh
Q 028315 3 SKVGNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSY 81 (210)
Q Consensus 3 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 81 (210)
.++...+.++-||++++|..++||||+|++++.+-|.. +..+++.++....+.+..+.+++.+|||+|+++|+.....+
T Consensus 10 ~am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAy 89 (246)
T KOG4252|consen 10 MAMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAY 89 (246)
T ss_pred CCCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHH
Confidence 34566777899999999999999999999999999888 88999999998888899999999999999999999999999
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCC
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNT 161 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 161 (210)
++++.+.++||+.+|..+|+... .|...+.... ..+|.++|-||+|+.++..+...+++.+++.+...++.+|++..
T Consensus 90 yrgaqa~vLVFSTTDr~SFea~~-~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked 166 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRYSFEATL-EWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKED 166 (246)
T ss_pred hccccceEEEEecccHHHHHHHH-HHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhh
Confidence 99999999999999999999999 7888877655 78999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHccchh
Q 028315 162 EDVKQCFKDLLYKILEVPSL 181 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~~~~~~ 181 (210)
.|+..+|..|.+.+.+....
T Consensus 167 ~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 167 FNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999988866554
No 126
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=9.5e-26 Score=174.08 Aligned_cols=169 Identities=28% Similarity=0.458 Sum_probs=133.1
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECC-------------eEEEEEEEeCCCCcccc
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGG-------------KRLKLTIWDTAGQERFG 75 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~~l~Dt~G~~~~~ 75 (210)
....+||+++|+.|||||||+++|.++.+.. +.+|.+.++....+.+++ ..+.++||||+|++.|.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 4568999999999999999999999998876 778998888777666642 46889999999999999
Q ss_pred cchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhcc-----------CCCCcEEEEEeCCCCCCCC---c---cC
Q 028315 76 TLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYST-----------NQDCVKILVGNKVDRDSER---A---VT 138 (210)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~Dl~~~~---~---~~ 138 (210)
.++..+++++|++|+|||+++..+|+.+. .|+..+..... ..++|++||+||+|+...+ . +.
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~-kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQ-KWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999998 78888766531 1258999999999996542 2 35
Q ss_pred HHHHHHHHHHcCCe-E---------------EEecccCCcCHHHHHHHHHHHHHccc
Q 028315 139 REEGMILAQEHKCL-F---------------LECSAKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 139 ~~~~~~~~~~~~~~-~---------------~~~sa~~~~~i~~l~~~i~~~~~~~~ 179 (210)
.++++.+++..++. . ....|+.+.-=.+.+..+.+.++.++
T Consensus 177 ~e~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (334)
T PLN00023 177 VDAARQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRR 233 (334)
T ss_pred HHHHHHHHHHcCCCccccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHH
Confidence 78899999887742 1 22345555444555666666666544
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=3.6e-26 Score=166.26 Aligned_cols=153 Identities=20% Similarity=0.219 Sum_probs=112.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-------CC-CCC------ceeeEEEEEEEEE-----CCeEEEEEEEeCCCCcccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSV-------HD-PSP------TIGVDFKIKLLTV-----GGKRLKLTIWDTAGQERFG 75 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~-------~~-~~~------~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~ 75 (210)
||+++|++++|||||+++|.+... .. +.+ +.+.++....... ++..+.+++|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 689999999999999999987421 11 112 2233443333222 5667899999999999999
Q ss_pred cchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC---e
Q 028315 76 TLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC---L 152 (210)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 152 (210)
..+..+++.+|++|+|+|++++.+++... .|.... ..++|+++|+||+|+.+.. ..+....+...++. .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~-~~~~~~-----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 153 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLA-NFYLAL-----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSE 153 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHH-HHHHHH-----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCccc
Confidence 99999999999999999999876666555 443332 2467999999999985432 12223345555555 4
Q ss_pred EEEecccCCcCHHHHHHHHHHHH
Q 028315 153 FLECSAKNTEDVKQCFKDLLYKI 175 (210)
Q Consensus 153 ~~~~sa~~~~~i~~l~~~i~~~~ 175 (210)
++++||++|.|++++|+++.+.+
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 154 AILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEEeeccCCCCHHHHHHHHHhhC
Confidence 89999999999999999998765
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=4.8e-26 Score=161.87 Aligned_cols=151 Identities=23% Similarity=0.392 Sum_probs=116.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeC
Q 028315 16 ILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDV 94 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (210)
|+++|++|+|||||++++.+..+.. +.++.+..... .... .+.+.+||+||++.+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7899999999999999999988766 66776655542 2222 37899999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHH-----HHcCCeEEEecccCCcCHHHHHH
Q 028315 95 TRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILA-----QEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
++..++.....++...+... ...+.|+++|+||+|+...... ++..... ....++++++|+++|.|++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKP-SLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCHHHHHHHHHHHHHHHcCh-hhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 99988887774454444322 2357899999999998654322 2221111 12235799999999999999999
Q ss_pred HHHH
Q 028315 170 DLLY 173 (210)
Q Consensus 170 ~i~~ 173 (210)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9875
No 129
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=1.9e-25 Score=161.61 Aligned_cols=153 Identities=23% Similarity=0.347 Sum_probs=117.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
...++|+++|++|+|||||++++.+..+....++.+.+.. .+... +..+.+||+||+..+...+..+++.+|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 4479999999999999999999998877666677665443 23333 4678999999998888888889999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcC--------CeEEEecccCCc
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHK--------CLFLECSAKNTE 162 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~sa~~~~ 162 (210)
|+|+++..++.....++...+.... ..+.|+++++||+|+..... .++. ....+ .+++++||++|.
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~--~~~i---~~~l~~~~~~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATAAP--AEEI---AEALNLHDLRDRTWHIQACSAKTGE 161 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccCCC--HHHH---HHHcCCcccCCCeEEEEEeECCCCC
Confidence 9999999888877744444443322 35789999999999864322 2222 22222 247899999999
Q ss_pred CHHHHHHHHHH
Q 028315 163 DVKQCFKDLLY 173 (210)
Q Consensus 163 ~i~~l~~~i~~ 173 (210)
|++++|+||++
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999875
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=2.1e-25 Score=160.58 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=106.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc---------chhhhhccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT---------LTSSYYRGA 85 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------~~~~~~~~~ 85 (210)
+|+++|++|+|||||+++|.+..+.. .+..+.+.......+....+.+++|||||...... ........+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEV-APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCcc-CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 78999999999999999999887643 12222222222223333467899999999742110 011112336
Q ss_pred cEEEEEEeCCCHhhH--HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcC
Q 028315 86 HGIILVYDVTRRETF--TNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTED 163 (210)
Q Consensus 86 d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 163 (210)
|++++|+|+++..++ +... .|...+.... .+.|+++|+||+|+.....+.. ...+....+.+++++||++|.|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~-~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQL-SLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred CcEEEEEeCCcccccchHHHH-HHHHHHHhhc--CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence 899999999987653 4443 4555554322 4789999999999976544332 3444444567899999999999
Q ss_pred HHHHHHHHHHHH
Q 028315 164 VKQCFKDLLYKI 175 (210)
Q Consensus 164 i~~l~~~i~~~~ 175 (210)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=1.7e-25 Score=161.31 Aligned_cols=157 Identities=19% Similarity=0.192 Sum_probs=107.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCc----ccccchhhhh---cccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE----RFGTLTSSYY---RGAH 86 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~---~~~d 86 (210)
+|+++|.+|||||||++++.+..... ..+....+.......+.+ ...+.+|||||.. .+......++ ..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 68999999999999999998755421 111111111111222222 2478999999963 2223333443 4599
Q ss_pred EEEEEEeCCCH-hhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH-cCCeEEEecccCCcC
Q 028315 87 GIILVYDVTRR-ETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSERAVTREEGMILAQE-HKCLFLECSAKNTED 163 (210)
Q Consensus 87 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~ 163 (210)
++++|+|++++ .+++.+. .|...+..... ....|+++|+||+|+.+.... .+....+... .+.+++++||+++.|
T Consensus 81 ~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 99999999998 7888777 67776654431 246899999999998765443 2334444444 367899999999999
Q ss_pred HHHHHHHHHHH
Q 028315 164 VKQCFKDLLYK 174 (210)
Q Consensus 164 i~~l~~~i~~~ 174 (210)
++++|+++.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998865
No 132
>PRK15494 era GTPase Era; Provisional
Probab=99.94 E-value=2.8e-25 Score=175.97 Aligned_cols=168 Identities=20% Similarity=0.272 Sum_probs=120.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc-cccchh-------hhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER-FGTLTS-------SYY 82 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~-------~~~ 82 (210)
.+.++|+++|.+|||||||+++|.+..+..+++..+++.......+...+.++.||||||... +..+.. ..+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 567899999999999999999999888766555555544433333333345789999999743 332221 236
Q ss_pred ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcC--CeEEEecccC
Q 028315 83 RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHK--CLFLECSAKN 160 (210)
Q Consensus 83 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~ 160 (210)
..+|++++|+|..+. +......|...+.. .+.|.++|+||+|+.+. ...+...+....+ ..++++||++
T Consensus 130 ~~aDvil~VvD~~~s--~~~~~~~il~~l~~----~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLKS--FDDITHNILDKLRS----LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCCC--CCHHHHHHHHHHHh----cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccC
Confidence 789999999998763 44444345555432 34677889999998643 1334444444333 5799999999
Q ss_pred CcCHHHHHHHHHHHHHccchhhhcccc
Q 028315 161 TEDVKQCFKDLLYKILEVPSLLEQGSA 187 (210)
Q Consensus 161 ~~~i~~l~~~i~~~~~~~~~~~~~~~~ 187 (210)
|.|++++|++|.+.+.+.+..++++..
T Consensus 201 g~gv~eL~~~L~~~l~~~~~~~~~~~~ 227 (339)
T PRK15494 201 GKNIDGLLEYITSKAKISPWLYAEDDI 227 (339)
T ss_pred ccCHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 999999999999999999998888743
No 133
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=1.7e-24 Score=153.54 Aligned_cols=158 Identities=25% Similarity=0.417 Sum_probs=125.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
++||+++|.+|+|||||++++....+.. +.++.+.+.....+...+..+.+.+||+||+..+...+..+++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 4799999999999999999999888544 556777676666666777668899999999999988888889999999999
Q ss_pred EeCCCH-hhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHH
Q 028315 92 YDVTRR-ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKD 170 (210)
Q Consensus 92 ~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~ 170 (210)
+|.... .++......|...+...... +.|+++++||.|+.... ........+......+++++||++|.|+.+++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence 999887 66666654566665555422 88999999999996544 3344444444445667999999999999999988
Q ss_pred HH
Q 028315 171 LL 172 (210)
Q Consensus 171 i~ 172 (210)
|.
T Consensus 159 l~ 160 (161)
T TIGR00231 159 VE 160 (161)
T ss_pred hh
Confidence 63
No 134
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=3.6e-25 Score=170.83 Aligned_cols=163 Identities=17% Similarity=0.080 Sum_probs=116.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc-c-------chhhhhcccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG-T-------LTSSYYRGAH 86 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~-------~~~~~~~~~d 86 (210)
+|+++|.+|||||||+|+|.+......++.++++.............++.||||||..... . ....+++.+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999998876655555554443332222234579999999965432 1 1234578999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEecccCCcCHH
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC-LFLECSAKNTEDVK 165 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 165 (210)
++++|+|+++..+.. . .+...+. ..+.|+++|+||+|+.+.... .+....+....+. +++++||++|.|++
T Consensus 82 vvl~VvD~~~~~~~~--~-~i~~~l~----~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 82 LILFVVDSDQWNGDG--E-FVLTKLQ----NLKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred EEEEEEECCCCCchH--H-HHHHHHH----hcCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 999999999876554 2 4444443 357899999999998643222 2233344444444 79999999999999
Q ss_pred HHHHHHHHHHHccchhhhcc
Q 028315 166 QCFKDLLYKILEVPSLLEQG 185 (210)
Q Consensus 166 ~l~~~i~~~~~~~~~~~~~~ 185 (210)
++++++.+.+...+..++.+
T Consensus 154 ~L~~~l~~~l~~~~~~~~~~ 173 (270)
T TIGR00436 154 FLAAFIEVHLPEGPFRYPED 173 (270)
T ss_pred HHHHHHHHhCCCCCCCCCCc
Confidence 99999999998888777665
No 135
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.5e-25 Score=154.68 Aligned_cols=161 Identities=21% Similarity=0.323 Sum_probs=133.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
-.+.+|+++|.-++||||+++++..+......||.|.......+ ..+++.+||..|++.++.+|+.++++.+++|+
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf 90 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGLIF 90 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence 46899999999999999999999999988889999987775544 37899999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHH-----HHcCCeEEEecccCCcCHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILA-----QEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~ 165 (210)
|+|.+|++++....+.+...+.... ....|+++.+||.|++.... ..++.... ......+..|+|.+|.|+.
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~-l~~~~llv~aNKqD~~~als--~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPE-LRNAPLLVFANKQDLPGALS--AAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcc-cCCceEEEEechhhccccCC--HHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 9999999999998866666654432 46899999999999976533 33322222 2234568899999999999
Q ss_pred HHHHHHHHHHHcc
Q 028315 166 QCFKDLLYKILEV 178 (210)
Q Consensus 166 ~l~~~i~~~~~~~ 178 (210)
+.++|+.+.+...
T Consensus 168 egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 168 EGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987653
No 136
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=1.2e-24 Score=171.33 Aligned_cols=162 Identities=18% Similarity=0.132 Sum_probs=115.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECC-eEEEEEEEeCCCCcc----cccchhh---hhccc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGG-KRLKLTIWDTAGQER----FGTLTSS---YYRGA 85 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~----~~~~~~~---~~~~~ 85 (210)
..|+++|.|+||||||++++++.... ..+.+++|.......+.. ....+.+||+||.-. ...+... +++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 35899999999999999999876533 222223333332222221 335689999999632 1123333 45679
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCH
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDV 164 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 164 (210)
+++++|+|+++.++++.+. .|...+..+.. ..++|+++|+||+|+.+...+..++...+....+.+++++||+++.|+
T Consensus 238 ~vlI~ViD~s~~~s~e~~~-~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYK-TIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred CEEEEEEcCCCCCCHHHHH-HHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999887888887 78787766542 247899999999999765544443444444556678999999999999
Q ss_pred HHHHHHHHHHHHc
Q 028315 165 KQCFKDLLYKILE 177 (210)
Q Consensus 165 ~~l~~~i~~~~~~ 177 (210)
++++++|.+.+.+
T Consensus 317 ~eL~~~L~~~l~~ 329 (335)
T PRK12299 317 DELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 137
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=1.3e-24 Score=161.38 Aligned_cols=157 Identities=18% Similarity=0.122 Sum_probs=109.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc-c-ch------hhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG-T-LT------SSY 81 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~-~~------~~~ 81 (210)
++.++|+++|++|||||||++++.+..+.. ..+....+.....+.+.+. ..+.+|||||..... . .. ...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 445899999999999999999998876432 2222222223333333332 378999999973211 0 00 113
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCC
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNT 161 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 161 (210)
+..+|++++|+|++++.++.... .|...+.... ..+.|+++|+||+|+.+..... ......+.+++++||+++
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~-~~~~~l~~~~-~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIE-TVEKVLKELG-AEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHH-HHHHHHHHcC-cCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCC
Confidence 56899999999999988877765 5666665443 3568999999999986543221 334445678999999999
Q ss_pred cCHHHHHHHHHHHH
Q 028315 162 EDVKQCFKDLLYKI 175 (210)
Q Consensus 162 ~~i~~l~~~i~~~~ 175 (210)
.|+++++++|.+.+
T Consensus 191 ~gi~~l~~~L~~~~ 204 (204)
T cd01878 191 EGLDELLEAIEELL 204 (204)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999988753
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=4.5e-24 Score=152.81 Aligned_cols=150 Identities=21% Similarity=0.164 Sum_probs=100.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC---CCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 15 KILLIGDSGVGKSSILLSLISNS---VHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.|+++|++|||||||+++|.+.. +.. ..+....+.......+.. ...+.+|||||++.+......+++.+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 68999999999999999998643 221 222223333323333332 4589999999999887666677889999999
Q ss_pred EEeCCC---HhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc--CHHHHHHHHHH---cCCeEEEecccCCc
Q 028315 91 VYDVTR---RETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV--TREEGMILAQE---HKCLFLECSAKNTE 162 (210)
Q Consensus 91 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~sa~~~~ 162 (210)
|+|+++ +++.+.+ ..+.. ....|+++++||+|+...... ..++....... .+.+++++||++|.
T Consensus 81 V~d~~~~~~~~~~~~~-----~~~~~---~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 81 VVAADEGIMPQTREHL-----EILEL---LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred EEECCCCccHhHHHHH-----HHHHH---hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 999987 3332222 12221 123489999999999653211 11223333333 35789999999999
Q ss_pred CHHHHHHHHHH
Q 028315 163 DVKQCFKDLLY 173 (210)
Q Consensus 163 ~i~~l~~~i~~ 173 (210)
|++++++.+.+
T Consensus 153 ~v~~l~~~l~~ 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHhh
Confidence 99999988753
No 139
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=2e-23 Score=156.64 Aligned_cols=171 Identities=39% Similarity=0.564 Sum_probs=137.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
..+||+++|++|||||||+++|....+.. +.++.+..+...........+.+.+|||+|+++++..+..++..++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34999999999999999999999999988 66777777766666666668899999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC------------ccCHHHHHHHHHHc---CCeEEE
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER------------AVTREEGMILAQEH---KCLFLE 155 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~ 155 (210)
|+|..+..++......|...+.... ....|+++++||+|+.... .............. ...+++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELA-PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhC-CCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 9999997777777779998887665 2578999999999997653 22222222222222 334899
Q ss_pred eccc--CCcCHHHHHHHHHHHHHccchhhh
Q 028315 156 CSAK--NTEDVKQCFKDLLYKILEVPSLLE 183 (210)
Q Consensus 156 ~sa~--~~~~i~~l~~~i~~~~~~~~~~~~ 183 (210)
+|++ ++.++.++|..+.+.+........
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLEEIEKLV 192 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence 9999 999999999999999876554443
No 140
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=1.3e-24 Score=152.41 Aligned_cols=134 Identities=22% Similarity=0.203 Sum_probs=98.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCc-----ccccchhhhhccccEEE
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE-----RFGTLTSSYYRGAHGII 89 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~~~~~~~~~~~d~~i 89 (210)
||+++|++|||||||+++|.+..+. +.++.+.++. -.+|||||.. .+..... .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~~------------~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEYN------------DGAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEEEc------------CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999877652 3333322221 1579999973 2333322 478999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEecccCCcCHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC-LFLECSAKNTEDVKQCF 168 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~l~ 168 (210)
+|+|++++.++... .|...+ ..|+++|+||+|+.+ +....++...+....+. +++++||++|.|++++|
T Consensus 68 lv~d~~~~~s~~~~--~~~~~~-------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 68 LVQSATDPESRFPP--GFASIF-------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred EEecCCCCCcCCCh--hHHHhc-------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence 99999999887552 343322 239999999999864 33455566666666665 79999999999999999
Q ss_pred HHHH
Q 028315 169 KDLL 172 (210)
Q Consensus 169 ~~i~ 172 (210)
+++.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 8874
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=2.9e-24 Score=159.16 Aligned_cols=154 Identities=21% Similarity=0.209 Sum_probs=102.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCC-----------cccccchh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ-----------ERFGTLTS 79 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------~~~~~~~~ 79 (210)
...++|+++|.+|+|||||++++.+..+.. ...++.++........ .+.+|||||. +.+...+.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRV-GKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc-CCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 456899999999999999999998877543 2333545544433332 5899999993 44444554
Q ss_pred hhhc----cccEEEEEEeCCCHhhHHH---------HHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHH
Q 028315 80 SYYR----GAHGIILVYDVTRRETFTN---------LSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILA 146 (210)
Q Consensus 80 ~~~~----~~d~~i~v~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 146 (210)
.++. .++++++|+|..+...+.. ....+...+. ..++|+++|+||+|+.+.. .+....+.
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~p~iiv~NK~Dl~~~~---~~~~~~~~ 154 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR----ELGIPPIVAVNKMDKIKNR---DEVLDEIA 154 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH----HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence 5543 3578888888765322100 0001122222 3578999999999986543 23444555
Q ss_pred HHcCC---------eEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 147 QEHKC---------LFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 147 ~~~~~---------~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
..++. +++++||++| |+++++++|.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 55554 5899999999 999999999987654
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=2.2e-23 Score=149.96 Aligned_cols=156 Identities=18% Similarity=0.154 Sum_probs=106.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEEC-CeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVG-GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
.|+++|++|+|||||+++|....+.. ..+....+.....+... .....+.+|||||++.+...+...++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887665 22333333332333332 24678999999999988888888899999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC-HHHHHHHHH------HcCCeEEEecccCCcCHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT-REEGMILAQ------EHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~------~~~~~~~~~sa~~~~~i~ 165 (210)
|+++....+... .+ ..+. ..+.|+++|+||+|+....... .++...+.. ....+++++||++|.|++
T Consensus 82 d~~~~~~~~~~~-~~-~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQTIE-AI-KLAK----AANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHHHH-HH-HHHH----HcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 999853222111 11 1222 2568999999999986432111 111111111 113579999999999999
Q ss_pred HHHHHHHHHHH
Q 028315 166 QCFKDLLYKIL 176 (210)
Q Consensus 166 ~l~~~i~~~~~ 176 (210)
+++++|.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999987654
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=2.9e-23 Score=147.76 Aligned_cols=147 Identities=18% Similarity=0.210 Sum_probs=107.3
Q ss_pred EEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc------chhhhhc--cccEE
Q 028315 18 LIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT------LTSSYYR--GAHGI 88 (210)
Q Consensus 18 i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~d~~ 88 (210)
++|.+|+|||||++++.+..+.. ..+..+.+.....+.+++ ..+.+|||||+..+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 57999999999999998876333 334444444444445554 5789999999877654 3455564 89999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
++|+|+.++.... .|...+. ..++|+++++||+|+.+...+..+ ...+...++.+++++||.+|.|+++++
T Consensus 79 i~v~d~~~~~~~~----~~~~~~~----~~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 79 VNVVDATNLERNL----YLTLQLL----ELGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EEEeeCCcchhHH----HHHHHHH----HcCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHH
Confidence 9999999865422 2222222 246899999999999765544433 456667778899999999999999999
Q ss_pred HHHHHHH
Q 028315 169 KDLLYKI 175 (210)
Q Consensus 169 ~~i~~~~ 175 (210)
+++.+.+
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9988764
No 144
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.91 E-value=7.6e-25 Score=147.24 Aligned_cols=157 Identities=18% Similarity=0.326 Sum_probs=128.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
++.+.++|..++|||||++....+.+.+ ..|+.|.... .++...+.+.+||.||+.+|+..|+.|.+.+++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 5788999999999999999998888888 8899998777 5667788999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHH-----HHcCCeEEEecccCCcCHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILA-----QEHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~ 166 (210)
+|+.+++..+.....+..++.... ..++|++|.+||.|+.+. ++..+...-. ....+.+|.+|+++..|++.
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~-l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPS-LTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchh-hcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 999999888888766666665544 578999999999998653 3332211111 11224589999999999999
Q ss_pred HHHHHHHHHH
Q 028315 167 CFKDLLYKIL 176 (210)
Q Consensus 167 l~~~i~~~~~ 176 (210)
+.+||++...
T Consensus 173 ~~~Wli~hsk 182 (186)
T KOG0075|consen 173 TLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHhh
Confidence 9999998654
No 145
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=5.5e-23 Score=144.49 Aligned_cols=153 Identities=47% Similarity=0.717 Sum_probs=119.5
Q ss_pred EEcCCCCcHHHHHHHHhhCCC-CC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCC
Q 028315 18 LIGDSGVGKSSILLSLISNSV-HD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVT 95 (210)
Q Consensus 18 i~G~~~~GKSsli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (210)
++|++|+|||||++++.+... .. ..++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998887 34 44444 6667666677777889999999999888877788899999999999999
Q ss_pred CHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHH-HHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 96 RRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREE-GMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
++.++.....++..... .....+.|+++++||+|+.......... ..........+++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILI-NKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHH-hhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 99988888733222222 2225789999999999987654433322 3344555678899999999999999999875
No 146
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=2.2e-23 Score=148.11 Aligned_cols=147 Identities=22% Similarity=0.206 Sum_probs=105.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccc--------hhhhhccc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTL--------TSSYYRGA 85 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~~~ 85 (210)
++|+++|++|+|||||++++.+.......+..+.+.......+......+.+|||||...+... ...++..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 5899999999999999999988765433333333322222222223467899999997665432 22456789
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHH
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 165 (210)
|++++|+|++++.+..... .+.. ....|+++|+||+|+.+.... .....+.+++++||+++.|++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~-~~~~-------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLE-ILEL-------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred CEEEEEEECCCCCCHHHHH-HHHh-------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 9999999999877665544 2222 357899999999998654432 334456789999999999999
Q ss_pred HHHHHHHHHH
Q 028315 166 QCFKDLLYKI 175 (210)
Q Consensus 166 ~l~~~i~~~~ 175 (210)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 147
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=8.4e-24 Score=159.27 Aligned_cols=172 Identities=19% Similarity=0.123 Sum_probs=131.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc--------cchhhhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG--------TLTSSYY 82 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 82 (210)
.+.--|+++|.|+||||||+|++.+.+....++.+.+|+......+.....++.|+||||...-. ......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 35567999999999999999999999999999999999988887777778899999999943322 2334457
Q ss_pred ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcC-CeEEEecccCC
Q 028315 83 RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHK-CLFLECSAKNT 161 (210)
Q Consensus 83 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~ 161 (210)
..+|++++|+|+.++..- ........+. ..+.|+++++||+|...+..........+..... ..++++||++|
T Consensus 84 ~dvDlilfvvd~~~~~~~--~d~~il~~lk----~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 84 KDVDLILFVVDADEGWGP--GDEFILEQLK----KTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred ccCcEEEEEEeccccCCc--cHHHHHHHHh----hcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 889999999999986432 2213334443 2467999999999987655422223333333333 36999999999
Q ss_pred cCHHHHHHHHHHHHHccchhhhccccc
Q 028315 162 EDVKQCFKDLLYKILEVPSLLEQGSAV 188 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~~~~~~~~~~~~~ 188 (210)
.|++.+.+.+...+.+.+..++++...
T Consensus 158 ~n~~~L~~~i~~~Lpeg~~~yp~d~it 184 (298)
T COG1159 158 DNVDTLLEIIKEYLPEGPWYYPEDQIT 184 (298)
T ss_pred CCHHHHHHHHHHhCCCCCCcCChhhcc
Confidence 999999999999999999999887443
No 148
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.6e-24 Score=151.92 Aligned_cols=147 Identities=20% Similarity=0.277 Sum_probs=99.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc------cchhhhh--cc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG------TLTSSYY--RG 84 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~--~~ 84 (210)
|+|+++|.|++|||||+|+|++..... ..|....+.....+.+.+ ..+.++|+||.-... .....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 689999999999999999999888433 333333334434444444 567888999943322 2223333 58
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCH
Q 028315 85 AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDV 164 (210)
Q Consensus 85 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 164 (210)
.|++++|+|+++.+. -. ++...+. ..+.|+++++||+|....+.+.. +...+.+.++++++.+||+++.|+
T Consensus 79 ~D~ii~VvDa~~l~r---~l-~l~~ql~----e~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~ 149 (156)
T PF02421_consen 79 PDLIIVVVDATNLER---NL-YLTLQLL----ELGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGI 149 (156)
T ss_dssp SSEEEEEEEGGGHHH---HH-HHHHHHH----HTTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTH
T ss_pred CCEEEEECCCCCHHH---HH-HHHHHHH----HcCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCH
Confidence 999999999987533 22 2222222 25799999999999876555443 466778889999999999999999
Q ss_pred HHHHHHH
Q 028315 165 KQCFKDL 171 (210)
Q Consensus 165 ~~l~~~i 171 (210)
+++++.|
T Consensus 150 ~~L~~~I 156 (156)
T PF02421_consen 150 DELKDAI 156 (156)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9998865
No 149
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=5.8e-24 Score=175.71 Aligned_cols=161 Identities=23% Similarity=0.189 Sum_probs=110.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEE--EEEEEECCeEEEEEEEeCCCCcc----------cccch-
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFK--IKLLTVGGKRLKLTIWDTAGQER----------FGTLT- 78 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~- 78 (210)
..++|+++|.+|+|||||+++|++..+....+..+++.. ...+.+++. .+.+|||||... +....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 569999999999999999999998876544444444433 333444444 567999999532 22221
Q ss_pred hhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC--HHHHH-HHHHHcCCeEEE
Q 028315 79 SSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT--REEGM-ILAQEHKCLFLE 155 (210)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~-~~~~~~~~~~~~ 155 (210)
..+++.+|++++|+|++++.+++... +...+. ..+.|+++|+||+|+.+..... .++.. .+.....+++++
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~----~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 361 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR--VLSMVI----EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVN 361 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEE
Confidence 23568999999999999988877664 223332 2578999999999996432111 11111 122223468999
Q ss_pred ecccCCcCHHHHHHHHHHHHHccch
Q 028315 156 CSAKNTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 156 ~sa~~~~~i~~l~~~i~~~~~~~~~ 180 (210)
+||++|.|++++|+.+.+.+.....
T Consensus 362 ~SAk~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 362 ISAKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999987764444
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=1.4e-23 Score=152.04 Aligned_cols=155 Identities=23% Similarity=0.266 Sum_probs=103.8
Q ss_pred EEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc----cccch---hhhhccccEEE
Q 028315 18 LIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER----FGTLT---SSYYRGAHGII 89 (210)
Q Consensus 18 i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~---~~~~~~~d~~i 89 (210)
++|++|||||||++++.+..... ..+.+..+.....+.+. ....+.+|||||... ...++ ...++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 58999999999999998876511 11111112222222222 156789999999632 22222 23467899999
Q ss_pred EEEeCCCH------hhHHHHHHHHHHHHhhhccC------CCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEec
Q 028315 90 LVYDVTRR------ETFTNLSSVWAKEVELYSTN------QDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157 (210)
Q Consensus 90 ~v~d~~~~------~~~~~~~~~~~~~~~~~~~~------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s 157 (210)
+|+|+.+. .++.... .|...+...... .+.|+++|+||+|+..................+..++++|
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYE-ILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEeccCCccccccCHHHHHH-HHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 99999988 4666666 555555433211 4789999999999976544433222333444566799999
Q ss_pred ccCCcCHHHHHHHHHHH
Q 028315 158 AKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 158 a~~~~~i~~l~~~i~~~ 174 (210)
|+++.|++++++++.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999998764
No 151
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=2.3e-23 Score=153.48 Aligned_cols=148 Identities=23% Similarity=0.243 Sum_probs=104.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh--CCCCCC-------------CCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccch
Q 028315 14 FKILLIGDSGVGKSSILLSLIS--NSVHDP-------------SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLT 78 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 78 (210)
-+|+++|.+++|||||+++|++ +.+... ..+.+.++......+....+.+.+|||||++.|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3899999999999999999987 444332 1234555555555566667899999999999999999
Q ss_pred hhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc-CHHHHHHHHH-------HcC
Q 028315 79 SSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV-TREEGMILAQ-------EHK 150 (210)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~ 150 (210)
..+++.+|++++|+|+++.. +.... .+...+. ..+.|+++|+||+|+...+.. ..++...+.. ..+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~-~~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTR-FVLKKAL----ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLD 156 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHH-HHHHHHH----HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCc
Confidence 99999999999999998742 22222 2322222 247899999999999643221 1233333332 236
Q ss_pred CeEEEecccCCcCHHHH
Q 028315 151 CLFLECSAKNTEDVKQC 167 (210)
Q Consensus 151 ~~~~~~sa~~~~~i~~l 167 (210)
++++++||++|.|+.++
T Consensus 157 ~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 157 FPVLYASAKNGWASLNL 173 (194)
T ss_pred cCEEEeehhcccccccc
Confidence 78999999999887543
No 152
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.91 E-value=1.7e-22 Score=136.84 Aligned_cols=167 Identities=25% Similarity=0.351 Sum_probs=140.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC---CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc-ccchhhhhccccE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD---PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF-GTLTSSYYRGAHG 87 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~d~ 87 (210)
+..||++.|..++|||++++.++.+.... ..||+...+....-+-.+..-.+.||||.|...+ ..+.+.++.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 45799999999999999999998776544 4455544333322233455668899999997777 5677788899999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
+++||+..++++|+.+. .+...+.....+..+|++|.+||+|+.++++++.+.++.++....+..++++|.+...+-+.
T Consensus 88 fVLVYs~~d~eSf~rv~-llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVE-LLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred EEEEecCCCHHHHHHHH-HHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 99999999999999988 78888888777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccc
Q 028315 168 FKDLLYKILEVP 179 (210)
Q Consensus 168 ~~~i~~~~~~~~ 179 (210)
|..+..++..-+
T Consensus 167 f~~l~~rl~~pq 178 (198)
T KOG3883|consen 167 FTYLASRLHQPQ 178 (198)
T ss_pred HHHHHHhccCCc
Confidence 999998876443
No 153
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=2.7e-23 Score=147.68 Aligned_cols=147 Identities=21% Similarity=0.097 Sum_probs=99.5
Q ss_pred EEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc--------chhhhhccccEE
Q 028315 17 LLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT--------LTSSYYRGAHGI 88 (210)
Q Consensus 17 ~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~~d~~ 88 (210)
+++|.+|+|||||++++.+.......+..+.+...........+..+.+|||||+..+.. .....++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 478999999999999998875322222222222222222222346789999999877543 334567889999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEecccCCcCHHHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC-LFLECSAKNTEDVKQC 167 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~l 167 (210)
++|+|+.++.+.... .+...+. ..+.|+++|+||+|+...... .......+. +++++|+++|.|++++
T Consensus 81 i~v~d~~~~~~~~~~--~~~~~~~----~~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 81 LFVVDGREGLTPADE--EIAKYLR----KSKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEeccccCCccHH--HHHHHHH----hcCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 999999876544332 2223332 245899999999998654322 222333455 6899999999999999
Q ss_pred HHHHHHH
Q 028315 168 FKDLLYK 174 (210)
Q Consensus 168 ~~~i~~~ 174 (210)
++++.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 154
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=1.1e-22 Score=160.16 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=111.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc----ccchhhh---hccc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF----GTLTSSY---YRGA 85 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~~~~---~~~~ 85 (210)
..|+++|.|+||||||++++....... .++.+........+.+++ ...+.+|||||.... ..+...+ ++.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 468999999999999999998765432 222222222222333332 367899999996422 1233344 4569
Q ss_pred cEEEEEEeCCCH---hhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCC
Q 028315 86 HGIILVYDVTRR---ETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNT 161 (210)
Q Consensus 86 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 161 (210)
+++++|+|+++. .+++.+. .|...+..+.. ..+.|++||+||+|+.+... ..+..+.+....+.+++++||+++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~-~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYE-IIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred CEEEEEEcCccccccCHHHHHH-HHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 999999999976 5677776 67666655432 24789999999999965533 233445556666788999999999
Q ss_pred cCHHHHHHHHHHHH
Q 028315 162 EDVKQCFKDLLYKI 175 (210)
Q Consensus 162 ~~i~~l~~~i~~~~ 175 (210)
.|+++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998764
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=8.4e-23 Score=166.53 Aligned_cols=152 Identities=23% Similarity=0.215 Sum_probs=110.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEE--EEEEEECCeEEEEEEEeCCCCcccccch--------hh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFK--IKLLTVGGKRLKLTIWDTAGQERFGTLT--------SS 80 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~ 80 (210)
...++|+++|++|||||||+|+|++.......+.++++.. ...+.++ +..+.+|||||...+...+ ..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~--g~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN--GILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC--CEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 3568999999999999999999998765443334444443 3344444 4567899999986554322 34
Q ss_pred hhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccC
Q 028315 81 YYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKN 160 (210)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 160 (210)
+++.+|++++|+|++++.+++.. |...+. ..+.|+++|+||+|+... +...+...++.+++.+||++
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~---~l~~~~----~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF---LIIDLN----KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ 345 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH---HHHHHh----hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec
Confidence 67899999999999998776543 433332 246899999999998543 12334556677899999998
Q ss_pred CcCHHHHHHHHHHHHHcc
Q 028315 161 TEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 161 ~~~i~~l~~~i~~~~~~~ 178 (210)
.||+++|+.+.+.+.+.
T Consensus 346 -~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 346 -LKIKALVDLLTQKINAF 362 (442)
T ss_pred -CCHHHHHHHHHHHHHHH
Confidence 69999999999887653
No 156
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=6.5e-23 Score=168.26 Aligned_cols=162 Identities=25% Similarity=0.189 Sum_probs=112.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccch-----------h
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLT-----------S 79 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-----------~ 79 (210)
...++|+++|.+++|||||+++|++.......+..+++.......+...+..+.+|||||...+.... .
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 45689999999999999999999987755444455555444333332233478999999976543321 2
Q ss_pred hhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHH-HHHHHH----cCCeEE
Q 028315 80 SYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEG-MILAQE----HKCLFL 154 (210)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~----~~~~~~ 154 (210)
..++.+|++++|+|++++.+.+... +...+. ..+.|+++|+||+|+.... ...++. ..+... .+++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLR--IAGLIL----EAGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHH--HHHHHH----HcCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceE
Confidence 3578899999999999887766543 222222 3578999999999996211 111111 122222 246899
Q ss_pred EecccCCcCHHHHHHHHHHHHHccc
Q 028315 155 ECSAKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 155 ~~sa~~~~~i~~l~~~i~~~~~~~~ 179 (210)
++||++|.|++++|+++.+.+....
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998765443
No 157
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=8.5e-23 Score=159.52 Aligned_cols=168 Identities=17% Similarity=0.135 Sum_probs=117.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc--------cchhhhhc
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG--------TLTSSYYR 83 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~ 83 (210)
+.-.|+++|.+|||||||+|++++......++.+.++.............++.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4567999999999999999999988876655555544444333333334789999999964432 12233567
Q ss_pred cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcC-CeEEEecccCCc
Q 028315 84 GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHK-CLFLECSAKNTE 162 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~ 162 (210)
.+|++++|+|+++... .....+...+. ..+.|+++|+||+|+.............+....+ ..++.+||+++.
T Consensus 84 ~~D~il~vvd~~~~~~--~~~~~i~~~l~----~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 84 DVDLVLFVVDADEKIG--PGDEFILEKLK----KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred cCCEEEEEEeCCCCCC--hhHHHHHHHHh----hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 8999999999998322 22213333333 3468999999999996432222333444444343 569999999999
Q ss_pred CHHHHHHHHHHHHHccchhhhcc
Q 028315 163 DVKQCFKDLLYKILEVPSLLEQG 185 (210)
Q Consensus 163 ~i~~l~~~i~~~~~~~~~~~~~~ 185 (210)
|++++++++.+.+...+..++.+
T Consensus 158 gv~~L~~~L~~~l~~~~~~y~~~ 180 (292)
T PRK00089 158 NVDELLDVIAKYLPEGPPYYPED 180 (292)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999998887766665
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=4.7e-23 Score=170.31 Aligned_cols=155 Identities=20% Similarity=0.182 Sum_probs=110.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc--------cccchhhhhcc
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER--------FGTLTSSYYRG 84 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~~ 84 (210)
..+|+++|.+|||||||+++|.+.......++++.+.......+...+..+.+|||||.+. +...+..+++.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence 4689999999999999999999877655555555554444433333345688999999763 22334556889
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCH
Q 028315 85 AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDV 164 (210)
Q Consensus 85 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 164 (210)
+|++|+|+|++++.++... .+...+. ..++|+++|+||+|+.... .+....+....+ .++++||++|.|+
T Consensus 118 aD~il~VvD~~~~~s~~~~--~i~~~l~----~~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~gi 187 (472)
T PRK03003 118 ADAVLFVVDATVGATATDE--AVARVLR----RSGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRGV 187 (472)
T ss_pred CCEEEEEEECCCCCCHHHH--HHHHHHH----HcCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCCc
Confidence 9999999999988665432 3444444 3578999999999985421 112222222223 3579999999999
Q ss_pred HHHHHHHHHHHHc
Q 028315 165 KQCFKDLLYKILE 177 (210)
Q Consensus 165 ~~l~~~i~~~~~~ 177 (210)
+++|+++.+.+.+
T Consensus 188 ~eL~~~i~~~l~~ 200 (472)
T PRK03003 188 GDLLDAVLAALPE 200 (472)
T ss_pred HHHHHHHHhhccc
Confidence 9999999998865
No 159
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=4.8e-23 Score=168.75 Aligned_cols=150 Identities=21% Similarity=0.204 Sum_probs=109.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccch--------hhhhc
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLT--------SSYYR 83 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~~ 83 (210)
..++|+++|.+|+|||||+|+|++.......+.++++.......+...+..+.+|||||...+.... ..++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIE 293 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHH
Confidence 3589999999999999999999987754433444444333332232234578999999986554321 23578
Q ss_pred cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcC
Q 028315 84 GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTED 163 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 163 (210)
.+|++++|+|++++.+++... .|.. ..+.|+++|+||+|+.+..... ...+.+++++||++|.|
T Consensus 294 ~aD~il~VvD~s~~~s~~~~~-~l~~-------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 294 EADLVLLVLDASEPLTEEDDE-ILEE-------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred hCCEEEEEecCCCCCChhHHH-HHHh-------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 899999999999987776543 3332 3568999999999996543221 33456799999999999
Q ss_pred HHHHHHHHHHHHHc
Q 028315 164 VKQCFKDLLYKILE 177 (210)
Q Consensus 164 i~~l~~~i~~~~~~ 177 (210)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 160
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=1.6e-22 Score=160.64 Aligned_cols=153 Identities=21% Similarity=0.175 Sum_probs=106.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCc---------ccccchhhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE---------RFGTLTSSY 81 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~ 81 (210)
..++|+++|.+|+|||||+|+|.+..... ..+.+..+.....+.+.+ +..+.+|||||.. .|...+ ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 44899999999999999999999876432 222222333444445532 3578999999972 122222 23
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCC
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNT 161 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 161 (210)
+.++|++++|+|++++.+++... .|...+.... ..+.|+++|+||+|+.+...+ ..+. ....+++.+||++|
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~-~~~~~L~~l~-~~~~piIlV~NK~Dl~~~~~v-----~~~~-~~~~~~i~iSAktg 337 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIE-AVEKVLEELG-AEDIPQLLVYNKIDLLDEPRI-----ERLE-EGYPEAVFVSAKTG 337 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHH-HHHHHHHHhc-cCCCCEEEEEEeecCCChHhH-----HHHH-hCCCCEEEEEccCC
Confidence 77899999999999988777665 5656655443 357899999999998643221 1111 12346899999999
Q ss_pred cCHHHHHHHHHHH
Q 028315 162 EDVKQCFKDLLYK 174 (210)
Q Consensus 162 ~~i~~l~~~i~~~ 174 (210)
.|+++++++|.+.
T Consensus 338 ~GI~eL~~~I~~~ 350 (351)
T TIGR03156 338 EGLDLLLEAIAER 350 (351)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
No 161
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=1.9e-22 Score=169.84 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=116.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCC-------CCC-CCC------ceeeEEEEEEEEE-----CCeEEEEEEEeCCCCcc
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNS-------VHD-PSP------TIGVDFKIKLLTV-----GGKRLKLTIWDTAGQER 73 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~-------~~~-~~~------~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~ 73 (210)
.-||+++|+.++|||||+++|+... +.. +.+ ..+.++....+.+ ++..+.++||||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3489999999999999999998752 111 222 2355555443333 45678999999999999
Q ss_pred cccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC--
Q 028315 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC-- 151 (210)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 151 (210)
|...+..+++.+|++++|+|++++.+++... .|..... .+.|+++|+||+|+.... ..+...++...++.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~-~~~~~~~-----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~ 154 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLA-NVYLALE-----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDA 154 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHH-HHHHHHH-----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCc
Confidence 9999999999999999999999977776665 4444332 467999999999986432 12223344555554
Q ss_pred -eEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 152 -LFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 152 -~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
.++++||++|.|++++|++|.+.+..
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 48999999999999999999987753
No 162
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=2.1e-22 Score=136.86 Aligned_cols=114 Identities=36% Similarity=0.646 Sum_probs=89.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCC---CCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVH---DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
||+|+|++|||||||+++|.+..+. ...++.+.++.............+.+||++|.+.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999999887 2444555555555667777777799999999999988888889999999999
Q ss_pred EeCCCHhhHHHHHHH--HHHHHhhhccCCCCcEEEEEeCCC
Q 028315 92 YDVTRRETFTNLSSV--WAKEVELYSTNQDCVKILVGNKVD 130 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D 130 (210)
||++++.+++.+... |+..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999987633 44444433 35699999999998
No 163
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=3e-22 Score=146.55 Aligned_cols=156 Identities=18% Similarity=0.138 Sum_probs=109.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCc---------------eeeEEEEEEEEECCeEEEEEEEeCCCCcccccchh
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPT---------------IGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTS 79 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 79 (210)
+|+++|.+|+|||||++++.+......... .+.+.......+......+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 589999999999999999988876552211 11222222222333356899999999988888888
Q ss_pred hhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC--HHHHHHHHHH---------
Q 028315 80 SYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT--REEGMILAQE--------- 148 (210)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~--------- 148 (210)
.+++.+|++++|+|+.++....... +...+. ..+.|+++++||+|+..+.... .++.......
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~----~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTRE--HLRIAR----EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHH--HHHHHH----HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8899999999999999865443222 222222 2578999999999997532221 1222233322
Q ss_pred -----cCCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 149 -----HKCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 149 -----~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
...+++++||++|.|++++++++.+.+.
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3567999999999999999999998763
No 164
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=4.2e-22 Score=142.60 Aligned_cols=156 Identities=17% Similarity=0.125 Sum_probs=106.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc--------chhhhhcc
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT--------LTSSYYRG 84 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~ 84 (210)
..+|+++|.+|+|||||++++.+.......+....+..............+.+|||||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999998876544333333333322333334457899999999654332 23345788
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHc-CCeEEEecccCCcC
Q 028315 85 AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEH-KCLFLECSAKNTED 163 (210)
Q Consensus 85 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~ 163 (210)
+|++++|+|++++.. .....+...+. ..+.|+++|+||+|+........+....+.... ..+++.+|++++.+
T Consensus 83 ~d~i~~v~d~~~~~~--~~~~~~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 83 VDLVLFVVDASEPIG--EGDEFILELLK----KSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred CCEEEEEEECCCccC--chHHHHHHHHH----HhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 999999999998722 22213333333 236899999999998743333233333444444 35799999999999
Q ss_pred HHHHHHHHHHH
Q 028315 164 VKQCFKDLLYK 174 (210)
Q Consensus 164 i~~l~~~i~~~ 174 (210)
+++++++|.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999998765
No 165
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=8.6e-22 Score=158.98 Aligned_cols=161 Identities=18% Similarity=0.166 Sum_probs=113.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCe-EEEEEEEeCCCCcc----cccchhhh---hcccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGK-RLKLTIWDTAGQER----FGTLTSSY---YRGAH 86 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~----~~~~~~~~---~~~~d 86 (210)
.|+++|.|+||||||++++++..... .+.++++.......+... ...+.+||+||... ...+...+ ++.++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kI-a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKI-ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCcc-ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 78999999999999999998876432 222333333222222212 45789999999632 22233444 45699
Q ss_pred EEEEEEeCCCH---hhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCc
Q 028315 87 GIILVYDVTRR---ETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTE 162 (210)
Q Consensus 87 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 162 (210)
++++|+|+++. +++++.. .|...+..+.. ..++|.+||+||+|+... .+....+...++.+++.+||+++.
T Consensus 239 llI~VID~s~~~~~dp~e~~~-~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYE-KINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred EEEEEEeCCccccCChHHHHH-HHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence 99999999864 5666665 67777766532 247899999999998432 234455566666789999999999
Q ss_pred CHHHHHHHHHHHHHccchh
Q 028315 163 DVKQCFKDLLYKILEVPSL 181 (210)
Q Consensus 163 ~i~~l~~~i~~~~~~~~~~ 181 (210)
|+++++++|.+.+.+.+..
T Consensus 314 GI~eL~~~L~~~l~~~~~~ 332 (424)
T PRK12297 314 GLDELLYAVAELLEETPEF 332 (424)
T ss_pred CHHHHHHHHHHHHHhCccc
Confidence 9999999999988776543
No 166
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=6.5e-22 Score=142.63 Aligned_cols=154 Identities=25% Similarity=0.203 Sum_probs=101.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEE--EEEEECCeEEEEEEEeCCCCccccc-----------chh
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKI--KLLTVGGKRLKLTIWDTAGQERFGT-----------LTS 79 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~~~ 79 (210)
+++|+++|.+|+|||||++++.+.......+..+.+... ...... +..+.+|||||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999999887643322222222222 222333 34578999999643311 112
Q ss_pred hhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHH-HHHHHHHc----CCeEE
Q 028315 80 SYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREE-GMILAQEH----KCLFL 154 (210)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~----~~~~~ 154 (210)
..++.+|++++|+|++++.+..... +...+. ..+.|+++++||+|+.+......++ ...+...+ ..+++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR--IAGLIL----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIV 153 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH--HHHHHH----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceE
Confidence 3467899999999999987655433 222222 2468999999999987653222222 22233333 36799
Q ss_pred EecccCCcCHHHHHHHHHHH
Q 028315 155 ECSAKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 155 ~~sa~~~~~i~~l~~~i~~~ 174 (210)
++||+++.|++++++++.+.
T Consensus 154 ~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 154 FISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEeccCCCCHHHHHHHHHHh
Confidence 99999999999999987653
No 167
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.7e-22 Score=132.45 Aligned_cols=158 Identities=23% Similarity=0.379 Sum_probs=131.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
.+++|+++|..++||||++.++..+......||.|.... .+....+.+.+||.+|++..+.+|+.++....++|+|
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnve----tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcccccccceeEE----EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 479999999999999999999988888888899987776 3445678999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH-----HcCCeEEEecccCCcCHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ-----EHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~ 166 (210)
+|..+.+..++++..+...+.... ....|++|.+||.|+++.+ .++++..... .....+..++|.+|.++.+
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~e-m~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDRE-MRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHh-hhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 999999999988876666665443 4678999999999997653 4455554432 2234588999999999999
Q ss_pred HHHHHHHHHH
Q 028315 167 CFKDLLYKIL 176 (210)
Q Consensus 167 l~~~i~~~~~ 176 (210)
-|.|+++.+.
T Consensus 169 glswlsnn~~ 178 (180)
T KOG0071|consen 169 GLSWLSNNLK 178 (180)
T ss_pred HHHHHHhhcc
Confidence 9999988654
No 168
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=4.3e-22 Score=146.49 Aligned_cols=157 Identities=20% Similarity=0.138 Sum_probs=101.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC----CCCC------CCCceeeEEEEEEEE----------ECCeEEEEEEEeCCCCcc
Q 028315 14 FKILLIGDSGVGKSSILLSLISN----SVHD------PSPTIGVDFKIKLLT----------VGGKRLKLTIWDTAGQER 73 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~----~~~~------~~~~~~~~~~~~~~~----------~~~~~~~~~l~Dt~G~~~ 73 (210)
+||+++|++++|||||+++|.+. .+.. ...|.........+. ..+..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999863 1111 112333232222222 123367899999999865
Q ss_pred cccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc--CHHHHHH-HHH---
Q 028315 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV--TREEGMI-LAQ--- 147 (210)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~-~~~--- 147 (210)
+..........+|++++|+|+.+........ .+. ... ..+.|+++++||+|+...... ..++... +..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~-~~~-~~~----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~ 154 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAE-CLV-IGE----ILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLE 154 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHH-HHH-HHH----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5333333456789999999999854433332 222 111 135699999999998643221 1122221 111
Q ss_pred ---HcCCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 148 ---EHKCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 148 ---~~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
..+++++++||++|.|++++++++...+.
T Consensus 155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred hcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13568999999999999999999988876
No 169
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=4.9e-22 Score=162.36 Aligned_cols=164 Identities=17% Similarity=0.131 Sum_probs=110.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc----ccc---hhhhhcccc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF----GTL---TSSYYRGAH 86 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~~d 86 (210)
..|+|+|.|+||||||+++|++..... .+.+++|.......+......+++|||||.... ..+ .-.+++.+|
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkI-adypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKI-ADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccc-cccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 478999999999999999998875433 333333433333333333467999999995321 111 122457799
Q ss_pred EEEEEEeCCCH----hhHHHHHHHHHHHHhhhc----------cCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCe
Q 028315 87 GIILVYDVTRR----ETFTNLSSVWAKEVELYS----------TNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCL 152 (210)
Q Consensus 87 ~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~----------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (210)
++++|+|+++. +.++.+. .|...+..+. ....+|++||+||+|+.+...+.. .........+++
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~-~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e-~l~~~l~~~g~~ 316 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDID-ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE-FVRPELEARGWP 316 (500)
T ss_pred EEEEEECCcccccccCchhhHH-HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH-HHHHHHHHcCCe
Confidence 99999999853 3444444 4444444332 134689999999999965433222 222223345788
Q ss_pred EEEecccCCcCHHHHHHHHHHHHHccch
Q 028315 153 FLECSAKNTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 153 ~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 180 (210)
++.+||+++.|+++++.+|.+.+...+.
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999998876654
No 170
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=2e-21 Score=162.94 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=108.9
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
..+..+|+++|++++|||||+++|.+..+.. ..+.+..+.....+...+. ..+.||||||++.|..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 3567899999999999999999998877655 3333333333333333322 2789999999999999988889999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH-------cC--CeEEEeccc
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQE-------HK--CLFLECSAK 159 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~--~~~~~~sa~ 159 (210)
++|+|+++...-+... .+.. .. ..++|+++++||+|+... ..++....... ++ .+++++||+
T Consensus 163 ILVVda~dgv~~qT~e-~i~~-~~----~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk 233 (587)
T TIGR00487 163 VLVVAADDGVMPQTIE-AISH-AK----AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSAL 233 (587)
T ss_pred EEEEECCCCCCHhHHH-HHHH-HH----HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence 9999998753222222 2211 11 357899999999998542 22233222222 22 469999999
Q ss_pred CCcCHHHHHHHHHH
Q 028315 160 NTEDVKQCFKDLLY 173 (210)
Q Consensus 160 ~~~~i~~l~~~i~~ 173 (210)
+|.|++++|+++..
T Consensus 234 tGeGI~eLl~~I~~ 247 (587)
T TIGR00487 234 TGDGIDELLDMILL 247 (587)
T ss_pred CCCChHHHHHhhhh
Confidence 99999999999874
No 171
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=9.5e-22 Score=157.88 Aligned_cols=169 Identities=18% Similarity=0.123 Sum_probs=116.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCe-EEEEEEEeCCCCcccc-------cchhhhhcccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGK-RLKLTIWDTAGQERFG-------TLTSSYYRGAH 86 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d 86 (210)
-|+|+|.||||||||+|++++... ...+.+++|.......+... ...++|+||||...-. ...-.+++.+|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 689999999999999999987764 44444444444443333222 3468999999964211 11123477899
Q ss_pred EEEEEEeCC---CHhhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcC--CeEEEecccC
Q 028315 87 GIILVYDVT---RRETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSERAVTREEGMILAQEHK--CLFLECSAKN 160 (210)
Q Consensus 87 ~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~ 160 (210)
++++|+|++ +...++... .|...+..... ..+.|+++|+||+|+.....+ .+....+....+ .+++.+||++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~-~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENAR-IIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred EEEEEeccCcccccChHHHHH-HHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence 999999998 445566665 56666654421 246899999999998654333 233334444433 3699999999
Q ss_pred CcCHHHHHHHHHHHHHccchhhhccc
Q 028315 161 TEDVKQCFKDLLYKILEVPSLLEQGS 186 (210)
Q Consensus 161 ~~~i~~l~~~i~~~~~~~~~~~~~~~ 186 (210)
+.|+++++++|.+.+.+.+..++++.
T Consensus 318 g~GIdeLl~~I~~~L~~~~~~~~~~~ 343 (390)
T PRK12298 318 GLGVKELCWDLMTFIEENPREEAEEA 343 (390)
T ss_pred CcCHHHHHHHHHHHhhhCcccCCccc
Confidence 99999999999999988777666553
No 172
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=6.6e-22 Score=140.94 Aligned_cols=140 Identities=19% Similarity=0.138 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc----chhhhhccccEEEE
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT----LTSSYYRGAHGIIL 90 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~~~~~~~d~~i~ 90 (210)
+|+++|.+|+|||||++++.+.. ....++.+. .+... .+|||||...... .....+..+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccCccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999986543 222222221 12221 2699999632221 11233689999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC--eEEEecccCCcCHHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC--LFLECSAKNTEDVKQCF 168 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~sa~~~~~i~~l~ 168 (210)
|+|+++..++.. .|...+ ..+.|+++++||+|+.+ ...+....+....++ +++++||++|.|++++|
T Consensus 71 v~d~~~~~s~~~---~~~~~~-----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 71 VHGANDPESRLP---AGLLDI-----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred EEeCCCcccccC---HHHHhc-----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 999998876532 222222 24678999999999854 234455666666664 89999999999999999
Q ss_pred HHHHHHHHc
Q 028315 169 KDLLYKILE 177 (210)
Q Consensus 169 ~~i~~~~~~ 177 (210)
+++.+.+.+
T Consensus 140 ~~l~~~~~~ 148 (158)
T PRK15467 140 DYLASLTKQ 148 (158)
T ss_pred HHHHHhchh
Confidence 998877643
No 173
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=8.2e-22 Score=146.10 Aligned_cols=160 Identities=18% Similarity=0.134 Sum_probs=100.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCceeeEEEEEEEEEC-----------------------------C----
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVH--DPSPTIGVDFKIKLLTVG-----------------------------G---- 58 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-----------------------------~---- 58 (210)
++|+++|+.|+|||||+..+.+.... ......+.+......... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 48999999999999999999654211 111111111111100000 0
Q ss_pred eEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC
Q 028315 59 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT 138 (210)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 138 (210)
...++.||||||++.+...+...+..+|++++|+|+.++.........+. .+.. ....|+++|+||+|+.+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~-~~~~---~~~~~iiivvNK~Dl~~~~~~~ 156 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLA-ALEI---MGLKHIIIVQNKIDLVKEEQAL 156 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHH-HHHH---cCCCcEEEEEEchhccCHHHHH
Confidence 12689999999999887777777888999999999997421111111221 1211 1235789999999986432211
Q ss_pred --HHHHHHHHHH---cCCeEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 139 --REEGMILAQE---HKCLFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 139 --~~~~~~~~~~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
.++...+... .+.+++.+||++|.|+++++++|.+.+..
T Consensus 157 ~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 157 ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 1222233322 25679999999999999999999876654
No 174
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=2.9e-21 Score=142.42 Aligned_cols=160 Identities=19% Similarity=0.177 Sum_probs=106.8
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCc----------ccccc
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSV-HDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE----------RFGTL 77 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~ 77 (210)
..+..++|+++|.+|+|||||++++.+..+ ..+.++++.+........ ...+.+|||||.. .+...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 334678999999999999999999998764 346666665554433332 3679999999953 22233
Q ss_pred hhhhhcc---ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC--HHHHHHHHHHcCCe
Q 028315 78 TSSYYRG---AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT--REEGMILAQEHKCL 152 (210)
Q Consensus 78 ~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~ 152 (210)
...+++. .+++++|+|..++.+.... .+...+. ..+.|+++++||+|+....+.. .++..........+
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 170 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLK----EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE 170 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHH----HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 3444544 4678889998876443321 1222232 2468899999999986433221 11222333333578
Q ss_pred EEEecccCCcCHHHHHHHHHHHHHc
Q 028315 153 FLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 153 ~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
++++||+++.|++++++.|.+.+.+
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999998876653
No 175
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=9.9e-22 Score=161.28 Aligned_cols=152 Identities=23% Similarity=0.157 Sum_probs=107.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc--------cccchhhhhcccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER--------FGTLTSSYYRGAH 86 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~~~d 86 (210)
+|+++|.+|||||||+++|.+.......+.++.+.......+...+..+.+|||||... +......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999877544455555544433333333345699999999632 2334455678999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEecccCCcCHH
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC-LFLECSAKNTEDVK 165 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 165 (210)
++++|+|+.++.+.... .+...+.. .++|+++|+||+|+...... ..+ ...+++ +++++||++|.|++
T Consensus 81 ~vl~vvD~~~~~~~~d~--~i~~~l~~----~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 81 VILFVVDGREGLTPEDE--EIAKWLRK----SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred EEEEEEeCCCCCCHHHH--HHHHHHHH----hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 99999999876443322 23333432 46899999999998654321 122 334566 69999999999999
Q ss_pred HHHHHHHHHHHc
Q 028315 166 QCFKDLLYKILE 177 (210)
Q Consensus 166 ~l~~~i~~~~~~ 177 (210)
++++++.+.+..
T Consensus 150 ~ll~~i~~~l~~ 161 (429)
T TIGR03594 150 DLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHhcCc
Confidence 999999988754
No 176
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=3e-21 Score=158.68 Aligned_cols=160 Identities=24% Similarity=0.182 Sum_probs=111.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccc-----------hhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTL-----------TSS 80 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~~~ 80 (210)
..++|+++|.+|+|||||++++++.......+..+++.......+...+..+.+|||||....... ...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 579999999999999999999998776555555566655544444334456889999996433211 123
Q ss_pred hhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH----cCCeEEEe
Q 028315 81 YYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQE----HKCLFLEC 156 (210)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~ 156 (210)
+++.+|++++|+|++++.+.+... +...+. ..+.|+++++||+|+.+.... .+....+... ..++++++
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~----~~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~~ 324 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLR--IAGLAL----EAGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVFI 324 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEEE
Confidence 578899999999999987666543 222222 246899999999998633211 1111122222 24689999
Q ss_pred cccCCcCHHHHHHHHHHHHHcc
Q 028315 157 SAKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 157 sa~~~~~i~~l~~~i~~~~~~~ 178 (210)
||++|.|++++++.+.+.....
T Consensus 325 SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 325 SALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988766543
No 177
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=2.4e-21 Score=157.19 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=106.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc--ccchhh------hhcc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF--GTLTSS------YYRG 84 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~~------~~~~ 84 (210)
.+|+++|.+|||||||+|+|.+..... ..+..+.+.....+.+.+. ..+.+|||||.... ...+.. .++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 589999999999999999998876532 2222222333333344332 26789999997332 222222 3578
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCe-EEEecccCCcC
Q 028315 85 AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCL-FLECSAKNTED 163 (210)
Q Consensus 85 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~ 163 (210)
+|++++|+|++++.+++.+. .|...+.... ..+.|+++|+||+|+.+... . .. . ....+.+ ++.+||++|.|
T Consensus 277 ADlIL~VvDaS~~~~~e~l~-~v~~iL~el~-~~~~pvIiV~NKiDL~~~~~--~-~~-~-~~~~~~~~~v~ISAktG~G 349 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIE-AVNTVLEEID-AHEIPTLLVMNKIDMLDDFE--P-RI-D-RDEENKPIRVWLSAQTGAG 349 (426)
T ss_pred CCEEEEEEeCCCccHHHHHH-HHHHHHHHhc-cCCCCEEEEEEcccCCCchh--H-HH-H-HHhcCCCceEEEeCCCCCC
Confidence 99999999999998777765 4555554433 35789999999999864311 1 11 1 1123444 58899999999
Q ss_pred HHHHHHHHHHHHHcc
Q 028315 164 VKQCFKDLLYKILEV 178 (210)
Q Consensus 164 i~~l~~~i~~~~~~~ 178 (210)
+++++++|.+.+...
T Consensus 350 IdeL~e~I~~~l~~~ 364 (426)
T PRK11058 350 IPLLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988543
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=5.4e-21 Score=162.75 Aligned_cols=157 Identities=15% Similarity=0.185 Sum_probs=111.5
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCcee--eEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcccc
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIG--VDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAH 86 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (210)
..+..+|+++|++++|||||+++|....+.. ....+. ...+...+...+....+.||||||++.|..++...+..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 4577899999999999999999998776654 222222 1222223333445689999999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHH-HH------HHHcC--CeEEEec
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGM-IL------AQEHK--CLFLECS 157 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~------~~~~~--~~~~~~s 157 (210)
++++|+|+.++...+... .|.. +. ..++|++|++||+|+.... .++.. .+ ...++ ++++++|
T Consensus 321 iaILVVDA~dGv~~QT~E-~I~~-~k----~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VS 391 (742)
T CHL00189 321 IAILIIAADDGVKPQTIE-AINY-IQ----AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPIS 391 (742)
T ss_pred EEEEEEECcCCCChhhHH-HHHH-HH----hcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEE
Confidence 999999998853322222 2221 11 3578999999999986532 12211 11 22233 6899999
Q ss_pred ccCCcCHHHHHHHHHHHH
Q 028315 158 AKNTEDVKQCFKDLLYKI 175 (210)
Q Consensus 158 a~~~~~i~~l~~~i~~~~ 175 (210)
|++|.|+++++++|....
T Consensus 392 AktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 392 ASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCCHHHHHHhhhhhh
Confidence 999999999999988754
No 179
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=1.2e-20 Score=139.66 Aligned_cols=119 Identities=18% Similarity=0.284 Sum_probs=90.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccc-cEEEEEEe
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGA-HGIILVYD 93 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~~i~v~d 93 (210)
+|+++|++|+|||+|+++|....+....+++.................+.+||+||+..+...+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999887766444443333322222224457899999999999988888889998 99999999
Q ss_pred CCCH-hhHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCC
Q 028315 94 VTRR-ETFTNLSSVWAKEVELYS-TNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 94 ~~~~-~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~ 133 (210)
+.+. .++.....++...+.... ...+.|+++++||+|+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 9997 677777755555544322 136899999999999854
No 180
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=3.1e-21 Score=140.37 Aligned_cols=150 Identities=18% Similarity=0.204 Sum_probs=100.2
Q ss_pred CCCCceEEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCc----------ccc
Q 028315 7 NNSYDYSFKILLIGDSGVGKSSILLSLISNSV-HDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE----------RFG 75 (210)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~ 75 (210)
+.++...++|+++|.+|+|||||++++.+..+ ..+.++.+.+.....+..+. .+.+|||||.. .+.
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence 34456788999999999999999999998763 33566666665544444432 68999999953 222
Q ss_pred cchhhhhcc---ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc--CHHHHHHHHHHcC
Q 028315 76 TLTSSYYRG---AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV--TREEGMILAQEHK 150 (210)
Q Consensus 76 ~~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~ 150 (210)
.....+++. +|++++|+|++++.+..... +...+. ..+.|+++++||+|+...... ..++.+......+
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~----~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLR----ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 333345543 58999999998865544432 223332 247899999999998643222 1223333333333
Q ss_pred --CeEEEecccCCcCHH
Q 028315 151 --CLFLECSAKNTEDVK 165 (210)
Q Consensus 151 --~~~~~~sa~~~~~i~ 165 (210)
..++++||++|.|++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 479999999999973
No 181
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.87 E-value=5.2e-21 Score=161.27 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=114.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCC--CCC------C------CCceeeEEEEEEEEE-----CCeEEEEEEEeCCCC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNS--VHD------P------SPTIGVDFKIKLLTV-----GGKRLKLTIWDTAGQ 71 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~------~------~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~ 71 (210)
++.-||+++|+.++|||||+.+|+... ... . ..+.+.++....+.+ ++..+.++||||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 344589999999999999999997632 111 1 122344443333222 455789999999999
Q ss_pred cccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC
Q 028315 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC 151 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 151 (210)
..|...+..+++.+|++|+|+|++++...+... .|.... ..+.|+++|+||+|+.... .......+...++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~-~~~~~~-----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~ 156 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLAL-----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGI 156 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHH-----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCC
Confidence 999999999999999999999999876655554 444332 2468999999999985432 12222344444454
Q ss_pred ---eEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 152 ---LFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 152 ---~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
.++.+||++|.|+++++++|.+.+..
T Consensus 157 ~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 157 DASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred CcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 38999999999999999999987753
No 182
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=1.2e-21 Score=143.65 Aligned_cols=159 Identities=21% Similarity=0.178 Sum_probs=106.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCC-----------------CCceeeEEEEEEEEE--CCeEEEEEEEeCCCCc
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDP-----------------SPTIGVDFKIKLLTV--GGKRLKLTIWDTAGQE 72 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~ 72 (210)
+.++|+++|+.++|||||+.+|+....... ....+.+........ ......+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 468999999999999999999975442110 000111111112222 2456789999999999
Q ss_pred ccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc-CHHHHH-HHHHHc-
Q 028315 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV-TREEGM-ILAQEH- 149 (210)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~-~~~~~~- 149 (210)
.|.......+..+|++|+|+|+.++...+... .+.. +. ..+.|++|++||+|+...+.. ..++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~-~l~~-~~----~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEE-HLKI-LR----ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHH-HHHH-HH----HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeeccccccccccc-cccc-cc----ccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 99888888899999999999999775443332 2322 22 357789999999998721110 011111 232222
Q ss_pred -----CCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 150 -----KCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 150 -----~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
.++++.+||.+|.|+++|++.|.+.+.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 257999999999999999999988754
No 183
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.86 E-value=3.8e-21 Score=130.68 Aligned_cols=176 Identities=25% Similarity=0.458 Sum_probs=141.5
Q ss_pred CCCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhc
Q 028315 5 VGNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYR 83 (210)
Q Consensus 5 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (210)
..+.+..-++||.++|++..|||||+-++.++.+.+ +..+.|..+..+.+.+.+.++.+.+||+.|++++.......-.
T Consensus 12 ~~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~ 91 (205)
T KOG1673|consen 12 IPAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACK 91 (205)
T ss_pred CcccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeec
Confidence 344455678999999999999999999999998866 8889999999999999999999999999999999888887778
Q ss_pred cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC--CCccCH---HHHHHHHHHcCCeEEEecc
Q 028315 84 GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS--ERAVTR---EEGMILAQEHKCLFLECSA 158 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~---~~~~~~~~~~~~~~~~~sa 158 (210)
++-+++++||++.+.++..+. .|.......- +..+| ++|++|.|+-- +.+..+ .+++..++..+++.|+||+
T Consensus 92 dsvaIlFmFDLt~r~TLnSi~-~WY~QAr~~N-ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~St 168 (205)
T KOG1673|consen 92 DSVAILFMFDLTRRSTLNSIK-EWYRQARGLN-KTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCST 168 (205)
T ss_pred CcEEEEEEEecCchHHHHHHH-HHHHHHhccC-Cccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeec
Confidence 889999999999999999999 5555443222 34456 66799999621 111111 2345566777899999999
Q ss_pred cCCcCHHHHHHHHHHHHHccchhhh
Q 028315 159 KNTEDVKQCFKDLLYKILEVPSLLE 183 (210)
Q Consensus 159 ~~~~~i~~l~~~i~~~~~~~~~~~~ 183 (210)
....|++.+|.-++-++..-+-.-+
T Consensus 169 s~sINv~KIFK~vlAklFnL~~ti~ 193 (205)
T KOG1673|consen 169 SHSINVQKIFKIVLAKLFNLPWTIP 193 (205)
T ss_pred cccccHHHHHHHHHHHHhCCceecc
Confidence 9999999999999988886654333
No 184
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.86 E-value=1e-20 Score=162.38 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=108.6
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
..+..+|+++|+.++|||||+++|....+.. ....+..+.....+... +..+.||||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 4678899999999999999999998766544 22222222222223333 46799999999999999998889999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHH-H------HHHHcC--CeEEEeccc
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGM-I------LAQEHK--CLFLECSAK 159 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~------~~~~~~--~~~~~~sa~ 159 (210)
|+|+|+++...-+... .|.. .. ..++|++|++||+|+.... .+... . +...++ ++++++||+
T Consensus 365 ILVVdAddGv~~qT~e-~i~~-a~----~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk 435 (787)
T PRK05306 365 VLVVAADDGVMPQTIE-AINH-AK----AAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAK 435 (787)
T ss_pred EEEEECCCCCCHhHHH-HHHH-HH----hcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence 9999999843222222 2221 11 3578999999999995432 11111 1 122333 679999999
Q ss_pred CCcCHHHHHHHHHHH
Q 028315 160 NTEDVKQCFKDLLYK 174 (210)
Q Consensus 160 ~~~~i~~l~~~i~~~ 174 (210)
+|.|++++|++|...
T Consensus 436 tG~GI~eLle~I~~~ 450 (787)
T PRK05306 436 TGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCchHHHHhhhhh
Confidence 999999999998753
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=4.5e-21 Score=157.64 Aligned_cols=148 Identities=22% Similarity=0.134 Sum_probs=102.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeE--EEEEEEEECCeEEEEEEEeCCCCccc--------ccchhhhhc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVD--FKIKLLTVGGKRLKLTIWDTAGQERF--------GTLTSSYYR 83 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~ 83 (210)
.+|+++|.+|||||||+++|.+.........++.+ ........++ ..+.+|||||.+.. ......+++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 47999999999999999999887754433333333 3333334444 78999999998762 222345678
Q ss_pred cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCe-EEEecccCCc
Q 028315 84 GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCL-FLECSAKNTE 162 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~ 162 (210)
.+|++++|+|+.++.+.... .+...+. ..+.|+++|+||+|+... .+...++ ..+++. ++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~----~~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE--EIAKILR----KSNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHH----HcCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 99999999999886443221 1222232 237899999999997431 1222222 345654 8999999999
Q ss_pred CHHHHHHHHHHH
Q 028315 163 DVKQCFKDLLYK 174 (210)
Q Consensus 163 ~i~~l~~~i~~~ 174 (210)
|++++++++.+.
T Consensus 149 gv~~l~~~I~~~ 160 (435)
T PRK00093 149 GIGDLLDAILEE 160 (435)
T ss_pred CHHHHHHHHHhh
Confidence 999999999873
No 186
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=9.1e-21 Score=163.50 Aligned_cols=154 Identities=16% Similarity=0.094 Sum_probs=109.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc--------ccchhhhhcc
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF--------GTLTSSYYRG 84 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~~ 84 (210)
..+|+++|.++||||||+|+|++.......++++.+...........+..+.+|||||.+.. ......+++.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 46899999999999999999998776555666666665554443333457899999997632 2233446789
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEecccCCcC
Q 028315 85 AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC-LFLECSAKNTED 163 (210)
Q Consensus 85 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~ 163 (210)
+|++++|+|+.+... .....|...+. ..+.|+++|+||+|+.... . ....+. .++. ..+++||++|.|
T Consensus 355 aD~iL~VvDa~~~~~--~~d~~i~~~Lr----~~~~pvIlV~NK~D~~~~~---~-~~~~~~-~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 355 ADAVVFVVDGQVGLT--STDERIVRMLR----RAGKPVVLAVNKIDDQASE---Y-DAAEFW-KLGLGEPYPISAMHGRG 423 (712)
T ss_pred CCEEEEEEECCCCCC--HHHHHHHHHHH----hcCCCEEEEEECcccccch---h-hHHHHH-HcCCCCeEEEECCCCCC
Confidence 999999999987532 22224545554 3678999999999985421 1 112221 2233 367999999999
Q ss_pred HHHHHHHHHHHHHc
Q 028315 164 VKQCFKDLLYKILE 177 (210)
Q Consensus 164 i~~l~~~i~~~~~~ 177 (210)
+++++++|++.+..
T Consensus 424 I~eLl~~i~~~l~~ 437 (712)
T PRK09518 424 VGDLLDEALDSLKV 437 (712)
T ss_pred chHHHHHHHHhccc
Confidence 99999999998754
No 187
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.86 E-value=9.3e-21 Score=134.39 Aligned_cols=151 Identities=23% Similarity=0.170 Sum_probs=103.1
Q ss_pred EEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECC-eEEEEEEEeCCCCccccc-------chhhhhccccEEE
Q 028315 18 LIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGG-KRLKLTIWDTAGQERFGT-------LTSSYYRGAHGII 89 (210)
Q Consensus 18 i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d~~i 89 (210)
++|++|+|||||++++.+..........+.+.......... ....+.+|||||...+.. ....+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999998876653222222222222222221 156899999999766543 3334678999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHH---HHHHHHHcCCeEEEecccCCcCHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREE---GMILAQEHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~sa~~~~~i~~ 166 (210)
+|+|+.+........ +..... ..+.|+++|+||+|+.......... ........+.+++++||+++.|+++
T Consensus 81 ~v~~~~~~~~~~~~~--~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 81 FVVDADLRADEEEEK--LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEeCCCCCCHHHHH--HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence 999999987655443 222221 4688999999999987654332211 1222333467899999999999999
Q ss_pred HHHHHHHH
Q 028315 167 CFKDLLYK 174 (210)
Q Consensus 167 l~~~i~~~ 174 (210)
+++++.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99998765
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=1.6e-20 Score=158.07 Aligned_cols=155 Identities=19% Similarity=0.221 Sum_probs=110.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC---CCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNS---VHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
++|+++|++++|||||+++|.+.. +.+ ..+.++.+.....+...+ ..+.+||+||++.|...+...+..+|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 478999999999999999998643 222 333444444433344443 78999999999999888888889999999
Q ss_pred EEEeCCCH---hhHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCCccC--HHHHHHHHHHc----CCeEEEeccc
Q 028315 90 LVYDVTRR---ETFTNLSSVWAKEVELYSTNQDCV-KILVGNKVDRDSERAVT--REEGMILAQEH----KCLFLECSAK 159 (210)
Q Consensus 90 ~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~----~~~~~~~sa~ 159 (210)
+|+|++++ ++++.+. .+. ..++| ++||+||+|+.+...+. .++...+.... +++++++||+
T Consensus 79 LVVDa~~G~~~qT~ehl~-----il~----~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA-----VLD----LLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred EEEECCCCCcHHHHHHHH-----HHH----HcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 99999984 3333222 222 23567 99999999997544321 23344444433 4689999999
Q ss_pred CCcCHHHHHHHHHHHHHccc
Q 028315 160 NTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 160 ~~~~i~~l~~~i~~~~~~~~ 179 (210)
+|.|+++++.++.+.+....
T Consensus 150 tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 150 TGQGIGELKKELKNLLESLD 169 (581)
T ss_pred CCCCchhHHHHHHHHHHhCC
Confidence 99999999999877765443
No 189
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.86 E-value=3e-20 Score=160.10 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=117.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccc----------hhhhh
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTL----------TSSYY 82 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~~~ 82 (210)
.++|+++|++|+|||||+|++.+... ...+.++.+.......+...+..+.+|||||...+... ...++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 47899999999999999999987654 45666788887777777777788999999998766431 12232
Q ss_pred --ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccC
Q 028315 83 --RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKN 160 (210)
Q Consensus 83 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 160 (210)
..+|++++|+|+++.++. . ++...+. ..+.|+++++||+|+.+.+.+. .+...+.+.++++++.+||++
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l-~l~~ql~----e~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---L-YLTLQLL----ELGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred hccCCCEEEEEecCCcchhh---H-HHHHHHH----HcCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeec
Confidence 479999999999986442 2 2323332 2578999999999987555553 356677888999999999999
Q ss_pred CcCHHHHHHHHHHHH
Q 028315 161 TEDVKQCFKDLLYKI 175 (210)
Q Consensus 161 ~~~i~~l~~~i~~~~ 175 (210)
|.|++++++.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999887765
No 190
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.2e-21 Score=131.40 Aligned_cols=161 Identities=25% Similarity=0.347 Sum_probs=128.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
+++.+++++|.-|+|||++..++--+......|+++.... .+......+++||+.|+-..+..|+-++.+.|.+||
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve----~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVE----TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcc----ccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 4789999999999999999999877777778888887766 445578899999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHH-----HHHHHcCCeEEEecccCCcCHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGM-----ILAQEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~sa~~~~~i~ 165 (210)
|+|.+|.+........+..++.... ..+.-++|++||.|..... ...++. ...+..-+.+|++||.+|.|++
T Consensus 92 VVDssd~dris~a~~el~~mL~E~e-Lq~a~llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEE-LQHAKLLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHh-hcCceEEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 9999999888777766777765544 3557788999999985432 222221 1122233679999999999999
Q ss_pred HHHHHHHHHHHcc
Q 028315 166 QCFKDLLYKILEV 178 (210)
Q Consensus 166 ~l~~~i~~~~~~~ 178 (210)
..++|+.+.+..+
T Consensus 169 ~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 169 PAMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887653
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=3.5e-21 Score=166.05 Aligned_cols=158 Identities=20% Similarity=0.179 Sum_probs=107.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEE--EEEEEECCeEEEEEEEeCCCCccc----------ccch-
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFK--IKLLTVGGKRLKLTIWDTAGQERF----------GTLT- 78 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~- 78 (210)
..+||+++|.+|||||||+++|++.......+..+++.. ...+.+++. .+.+|||||.... ....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999998875433333333333 333444544 5679999995321 1111
Q ss_pred hhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHH-HHHHH----cCCeE
Q 028315 79 SSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGM-ILAQE----HKCLF 153 (210)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~ 153 (210)
...++.+|++++|+|++++.+++... .+.... ..++|+++|+||+|+.+... .+... .+... ..+++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~-----~~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~i 598 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAV-----DAGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARR 598 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHH-----HcCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCE
Confidence 23468899999999999988777665 333222 25789999999999964322 11111 12222 13468
Q ss_pred EEecccCCcCHHHHHHHHHHHHHccc
Q 028315 154 LECSAKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 154 ~~~sa~~~~~i~~l~~~i~~~~~~~~ 179 (210)
+.+||++|.|++++++.+.+.+....
T Consensus 599 i~iSAktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 599 VNLSAKTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999877543
No 192
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=1.7e-20 Score=148.88 Aligned_cols=163 Identities=23% Similarity=0.183 Sum_probs=122.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc----------cccc-hhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER----------FGTL-TSS 80 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~-~~~ 80 (210)
..+||+++|.|++|||||+|++++......++..|++.......+...+..+.++||+|... |... ...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 46999999999999999999999999988999999999988877775666788889999322 2111 123
Q ss_pred hhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHH-HHHHH----cCCeEEE
Q 028315 81 YYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGM-ILAQE----HKCLFLE 155 (210)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~~ 155 (210)
.+..+|++++|+|++.+.+.++.. ....+. ..+.++++++||+|+.+......++.. .+... ..++++.
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~--ia~~i~----~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLR--IAGLIE----EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHH--HHHHHH----HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 467899999999999987655543 333333 478899999999998765333333322 22222 2568999
Q ss_pred ecccCCcCHHHHHHHHHHHHHccch
Q 028315 156 CSAKNTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 156 ~sa~~~~~i~~l~~~i~~~~~~~~~ 180 (210)
+||++|.++.++|+.+.+.......
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~ 355 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATR 355 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhcc
Confidence 9999999999999998876654443
No 193
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=1.8e-20 Score=157.88 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=104.3
Q ss_pred cCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccc------hhhhh--ccccEEEEE
Q 028315 20 GDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTL------TSSYY--RGAHGIILV 91 (210)
Q Consensus 20 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~~d~~i~v 91 (210)
|++|+|||||+|++.+... ...+.++.+.......+...+..+++|||||+..+... ...++ +.+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 8999999999999988765 33334444444333333223346789999998877543 33333 378999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i 171 (210)
+|+++.+.. . ++...+. ..+.|+++++||+|+.+.+.+. .+.+.+.+..+++++++||++|.|++++++++
T Consensus 80 vDat~ler~---l-~l~~ql~----~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 80 VDASNLERN---L-YLTLQLL----ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred ecCCcchhh---H-HHHHHHH----hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 999875431 1 2222221 2578999999999986655554 34677888889999999999999999999999
Q ss_pred HHHH
Q 028315 172 LYKI 175 (210)
Q Consensus 172 ~~~~ 175 (210)
.+.+
T Consensus 151 ~~~~ 154 (591)
T TIGR00437 151 RKAI 154 (591)
T ss_pred HHHh
Confidence 8764
No 194
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.8e-21 Score=133.77 Aligned_cols=159 Identities=29% Similarity=0.385 Sum_probs=122.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCC---C-----CCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcc
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSV---H-----DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRG 84 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (210)
.+.|+|+|.-++|||||+........ . ...+|.+.... +++-....+.|||..|++..+++|..+|..
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig----~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG----TIEVCNAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec----ceeeccceeEEEEcCChHHHHHHHHHHHHH
Confidence 57899999999999999998744321 1 13445444433 233336789999999999999999999999
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHH---HHHc---CCeEEEecc
Q 028315 85 AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMIL---AQEH---KCLFLECSA 158 (210)
Q Consensus 85 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~---~~~~~~~sa 158 (210)
+|++|+++|+++++.|+.....+...+.... -.+.|+++.+||.|+.+..+. .+.... +... ..++..+||
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~-leg~p~L~lankqd~q~~~~~--~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEK-LEGAPVLVLANKQDLQNAMEA--AELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHH-hcCCchhhhcchhhhhhhhhH--HHHHHHhhhhhhcCCccCccccchh
Confidence 9999999999999999998877766665444 578999999999998654332 222211 2222 346999999
Q ss_pred cCCcCHHHHHHHHHHHHHcc
Q 028315 159 KNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 159 ~~~~~i~~l~~~i~~~~~~~ 178 (210)
.+|.||++...|+.+.+..+
T Consensus 170 l~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcccHHHHHHHHHHHHhhc
Confidence 99999999999999999877
No 195
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=8.1e-21 Score=150.69 Aligned_cols=152 Identities=20% Similarity=0.094 Sum_probs=114.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc---------cchhhhhcc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG---------TLTSSYYRG 84 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~~~ 84 (210)
..|+++|.||||||||+|||.+.....+..++|.|...........+..+.++||+|.+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999988888888888776655554445668999999966432 122334678
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEecccCCcC
Q 028315 85 AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC-LFLECSAKNTED 163 (210)
Q Consensus 85 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~ 163 (210)
||++|+|+|...+.+-.+. .....+. ..++|+++|+||+|-.. .++.......+|+ .++.+||..|.|
T Consensus 84 ADvilfvVD~~~Git~~D~--~ia~~Lr----~~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 84 ADVILFVVDGREGITPADE--EIAKILR----RSKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred CCEEEEEEeCCCCCCHHHH--HHHHHHH----hcCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccC
Confidence 9999999999986543322 3344444 35789999999999642 2222233334555 599999999999
Q ss_pred HHHHHHHHHHHHH
Q 028315 164 VKQCFKDLLYKIL 176 (210)
Q Consensus 164 i~~l~~~i~~~~~ 176 (210)
+.+|++++++.+.
T Consensus 153 i~dLld~v~~~l~ 165 (444)
T COG1160 153 IGDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999984
No 196
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.84 E-value=1.4e-20 Score=125.96 Aligned_cols=160 Identities=24% Similarity=0.339 Sum_probs=127.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.+++||+++|..++|||||+..|.........||.|..... +..+ .++++.+||.+|+...+..|..||.+.|++||
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~--v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKK--VEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEE--Eeec-CcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 67899999999999999999999888887788888865553 3333 45899999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHH----HHHcCCeEEEecccCCcCHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMIL----AQEHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~sa~~~~~i~~ 166 (210)
|+|.+|...|+++...+.++++... ...+|+.+..||.|+..+..+.+ .++.+ .+...+.+-+|||.+++|+.+
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeK-l~~vpvlIfankQdlltaa~~ee-ia~klnl~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEK-LAEVPVLIFANKQDLLTAAKVEE-IALKLNLAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhh-hhccceeehhhhhHHHhhcchHH-HHHhcchhhhhhceEEeeeCccccccCccC
Confidence 9999999999988867766665544 57899999999999865443322 11111 111234689999999999999
Q ss_pred HHHHHHHHH
Q 028315 167 CFKDLLYKI 175 (210)
Q Consensus 167 l~~~i~~~~ 175 (210)
-.+|+....
T Consensus 170 g~~wv~sn~ 178 (185)
T KOG0074|consen 170 GSDWVQSNP 178 (185)
T ss_pred cchhhhcCC
Confidence 888876543
No 197
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.9e-20 Score=131.41 Aligned_cols=175 Identities=27% Similarity=0.481 Sum_probs=146.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
...++++++|..|.|||+++.+++.+.|.. +.++.|...+.....-+...+++..|||.|++.+..+...++-.+.+++
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 368999999999999999999999999988 8899998888776555555699999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
++||+....++.++. .|..-+.+.+ .++|+++++||.|.... . .......+.+..++.|+++||+.+.|.+.-|.
T Consensus 88 imFdVtsr~t~~n~~-rwhrd~~rv~--~NiPiv~cGNKvDi~~r-~-~k~k~v~~~rkknl~y~~iSaksn~NfekPFl 162 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVP-RWHRDLVRVR--ENIPIVLCGNKVDIKAR-K-VKAKPVSFHRKKNLQYYEISAKSNYNFERPFL 162 (216)
T ss_pred EEeeeeehhhhhcch-HHHHHHHHHh--cCCCeeeeccceecccc-c-cccccceeeecccceeEEeecccccccccchH
Confidence 999999999999999 5666665555 46999999999997543 2 22234455666778899999999999999999
Q ss_pred HHHHHHHccchhhhccccccc
Q 028315 170 DLLYKILEVPSLLEQGSAVVK 190 (210)
Q Consensus 170 ~i~~~~~~~~~~~~~~~~~~~ 190 (210)
|+.+.+...+....-.....-
T Consensus 163 ~LarKl~G~p~Lefva~paLa 183 (216)
T KOG0096|consen 163 WLARKLTGDPSLEFVAMPALA 183 (216)
T ss_pred HHhhhhcCCCCeEEEeccccC
Confidence 999999998886655544333
No 198
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.84 E-value=4.3e-20 Score=151.19 Aligned_cols=155 Identities=17% Similarity=0.098 Sum_probs=104.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC------------------------------CCCceeeEEEEEEEEECCeE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD------------------------------PSPTIGVDFKIKLLTVGGKR 60 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 60 (210)
-..++|+++|++++|||||+++|+...... .....|.+.......+....
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 357999999999999999999997432111 11245666666666666677
Q ss_pred EEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCc----
Q 028315 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERA---- 136 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---- 136 (210)
+.+.||||||++.|.......+..+|++++|+|++++..+......+...+.. ....|++|++||+|+.+...
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~---~~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART---LGINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH---cCCCeEEEEEEccccccccHHHHH
Confidence 89999999999888766556678999999999999731121111122222221 12246899999999864211
Q ss_pred cCHHHHHHHHHHcC-----CeEEEecccCCcCHHHHH
Q 028315 137 VTREEGMILAQEHK-----CLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 137 ~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~l~ 168 (210)
...++...+....+ ++++++||++|.|++++.
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 11223444444444 469999999999998744
No 199
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=7.8e-20 Score=145.51 Aligned_cols=155 Identities=19% Similarity=0.161 Sum_probs=121.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccch--------hhhhc
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLT--------SSYYR 83 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~~ 83 (210)
.-+|++++|.||||||||+|.|++.....+++.+|+|+......+.-.++.+.+.||+|..+-.... ...+.
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIE 295 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999888888999999999966443322 33578
Q ss_pred cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcC
Q 028315 84 GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTED 163 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 163 (210)
.||.+++|+|++.+.+-.... ... ....+.|+++|.||.|+........ +....+.+++.+|+++|.|
T Consensus 296 ~ADlvL~v~D~~~~~~~~d~~--~~~-----~~~~~~~~i~v~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 296 EADLVLFVLDASQPLDKEDLA--LIE-----LLPKKKPIIVVLNKADLVSKIELES-----EKLANGDAIISISAKTGEG 363 (454)
T ss_pred hCCEEEEEEeCCCCCchhhHH--HHH-----hcccCCCEEEEEechhcccccccch-----hhccCCCceEEEEecCccC
Confidence 899999999999863322222 111 1146789999999999976543211 1122344699999999999
Q ss_pred HHHHHHHHHHHHHcc
Q 028315 164 VKQCFKDLLYKILEV 178 (210)
Q Consensus 164 i~~l~~~i~~~~~~~ 178 (210)
++.+.+.|.+.+...
T Consensus 364 l~~L~~~i~~~~~~~ 378 (454)
T COG0486 364 LDALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999988887765
No 200
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=3.1e-20 Score=138.15 Aligned_cols=148 Identities=18% Similarity=0.132 Sum_probs=95.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCC------------------------------CCceeeEEEEEEEEECCeEEEEE
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDP------------------------------SPTIGVDFKIKLLTVGGKRLKLT 64 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 64 (210)
||+++|++++|||||+++|+....... ....+.+.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999975432111 01133344444444444566889
Q ss_pred EEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc----CHH
Q 028315 65 IWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV----TRE 140 (210)
Q Consensus 65 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~ 140 (210)
+|||||++.|...+...++.+|++++|+|++++..-+.. .....+.. ....++++|+||+|+.+.... ...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSL---LGIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHH---cCCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 999999988866666678899999999999876422211 11122221 122457889999998643211 112
Q ss_pred HHHHHHHHcC---CeEEEecccCCcCHHHH
Q 028315 141 EGMILAQEHK---CLFLECSAKNTEDVKQC 167 (210)
Q Consensus 141 ~~~~~~~~~~---~~~~~~sa~~~~~i~~l 167 (210)
+...+...++ .+++.+||++|.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 3334444555 35999999999998863
No 201
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.83 E-value=9.8e-20 Score=137.15 Aligned_cols=173 Identities=20% Similarity=0.175 Sum_probs=125.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc------c------ccch
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER------F------GTLT 78 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~------~~~~ 78 (210)
.+.++|+++|.|++|||||.|.+.+.+....+....++.......+.....++.|+||||.-. + ....
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 578999999999999999999999999988777777778877778888888999999999211 1 1122
Q ss_pred hhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC-------------ccCH---HHH
Q 028315 79 SSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER-------------AVTR---EEG 142 (210)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------------~~~~---~~~ 142 (210)
...+..||++++|+|+++....-.- ..+..+..+ ..+|-++|+||.|...+. .+.. +..
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p--~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHP--RVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccCh--HHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 3346789999999999964221111 234445544 378889999999975331 1111 111
Q ss_pred HHHHHHc---------CC----eEEEecccCCcCHHHHHHHHHHHHHccchhhhccccc
Q 028315 143 MILAQEH---------KC----LFLECSAKNTEDVKQCFKDLLYKILEVPSLLEQGSAV 188 (210)
Q Consensus 143 ~~~~~~~---------~~----~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~ 188 (210)
+.+.... |+ .+|.+||++|.||+++-++|...+...+-+++.+...
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T 283 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVT 283 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCccccc
Confidence 1111111 12 3899999999999999999999999999888876433
No 202
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.83 E-value=9.4e-20 Score=149.15 Aligned_cols=155 Identities=19% Similarity=0.143 Sum_probs=104.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhC--CCCC----------------------------CCCceeeEEEEEEEEECCeE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISN--SVHD----------------------------PSPTIGVDFKIKLLTVGGKR 60 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~----------------------------~~~~~~~~~~~~~~~~~~~~ 60 (210)
-..++|+++|+.++|||||+.+|+.. .... .....+.+.......+....
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 35699999999999999999999752 1110 11223445555555666667
Q ss_pred EEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHH-HHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc--
Q 028315 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSS-VWAKEVELYSTNQDCVKILVGNKVDRDSERAV-- 137 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-- 137 (210)
+.+.||||||++.|.......+..+|++++|+|++++..+..... .+..... . ....|++|++||+|+.+....
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~-~--~~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLAR-T--LGINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHH-H--cCCCeEEEEEEChhccCccHHHH
Confidence 899999999999887666666789999999999998743211110 1111121 1 123579999999999642211
Q ss_pred --CHHHHHHHHHHcC-----CeEEEecccCCcCHHHHH
Q 028315 138 --TREEGMILAQEHK-----CLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 138 --~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~l~ 168 (210)
..++...+....+ ++++++||++|.|+.+++
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1234445555544 579999999999998744
No 203
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.83 E-value=1.3e-19 Score=152.52 Aligned_cols=158 Identities=19% Similarity=0.237 Sum_probs=113.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC--CCCCC-------------CCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchh
Q 028315 15 KILLIGDSGVGKSSILLSLISN--SVHDP-------------SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTS 79 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 79 (210)
||+++|+.++|||||+++|+.. .+... ....+.+.......+...++.+.+|||||+..|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999863 22221 12335555555555666678999999999999998899
Q ss_pred hhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc-CHHHHHHHHH-------HcCC
Q 028315 80 SYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV-TREEGMILAQ-------EHKC 151 (210)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~ 151 (210)
.+++.+|++++|+|+.+... .... .|...+. ..++|++|++||+|+...+.. ..++...+.. ...+
T Consensus 83 ~~l~~aD~alLVVDa~~G~~-~qT~-~~l~~a~----~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPM-PQTR-FVLKKAL----ELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCc-HHHH-HHHHHHH----HCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 99999999999999987532 2223 2333332 256899999999998654311 1223333332 2356
Q ss_pred eEEEecccCCc----------CHHHHHHHHHHHHHcc
Q 028315 152 LFLECSAKNTE----------DVKQCFKDLLYKILEV 178 (210)
Q Consensus 152 ~~~~~sa~~~~----------~i~~l~~~i~~~~~~~ 178 (210)
+++.+||++|. |+..+|+.+++.+...
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 89999999996 7999999999887643
No 204
>PRK10218 GTP-binding protein; Provisional
Probab=99.83 E-value=5.9e-19 Score=148.43 Aligned_cols=160 Identities=19% Similarity=0.192 Sum_probs=117.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhh--CCCCC-------------CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc
Q 028315 12 YSFKILLIGDSGVGKSSILLSLIS--NSVHD-------------PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT 76 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 76 (210)
+.-||+++|+.++|||||+++|+. +.+.. ...+.+.++......+...++.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 346899999999999999999986 33322 123556777777777777788999999999999999
Q ss_pred chhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc-CHHHHHHHHHH-------
Q 028315 77 LTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV-TREEGMILAQE------- 148 (210)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~------- 148 (210)
.+..+++.+|++++|+|+.+....+... .|.... ..+.|.++++||+|+...+.. ..++...+...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~-~l~~a~-----~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRF-VTKKAF-----AYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHH-HHHHHH-----HcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 9999999999999999999864333322 333322 257889999999998643221 11233333211
Q ss_pred cCCeEEEecccCCc----------CHHHHHHHHHHHHHc
Q 028315 149 HKCLFLECSAKNTE----------DVKQCFKDLLYKILE 177 (210)
Q Consensus 149 ~~~~~~~~sa~~~~----------~i~~l~~~i~~~~~~ 177 (210)
..++++.+||.+|. ++..+++.|+..+..
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 34679999999998 588888888887753
No 205
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=4.4e-19 Score=130.25 Aligned_cols=147 Identities=13% Similarity=0.061 Sum_probs=99.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCC----------C-----CCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccc
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSV----------H-----DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTL 77 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~----------~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 77 (210)
+++|+++|+.++|||||+++|+.... . ......+.+.......+.....++.|+||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 58999999999999999999976410 0 01123455555555555556678899999999888777
Q ss_pred hhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCCccC---HHHHHHHHHHc----
Q 028315 78 TSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCV-KILVGNKVDRDSERAVT---REEGMILAQEH---- 149 (210)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~---- 149 (210)
....+..+|++++|+|+..+..-+... .| ..+. ..+.| +++++||+|+....... .++...+....
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~~-~~-~~~~----~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTRE-HL-LLAR----QVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHH-HH-HHHH----HcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 777788999999999998753322222 22 2222 24556 78999999985332211 12333333333
Q ss_pred -CCeEEEecccCCcCHH
Q 028315 150 -KCLFLECSAKNTEDVK 165 (210)
Q Consensus 150 -~~~~~~~sa~~~~~i~ 165 (210)
+++++.+||.+|.|+.
T Consensus 156 ~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 DNTPIVRGSALKALEGD 172 (195)
T ss_pred cCCeEEEeeCccccCCC
Confidence 3679999999999853
No 206
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.82 E-value=7.4e-19 Score=132.66 Aligned_cols=152 Identities=22% Similarity=0.145 Sum_probs=98.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc-------cchhhhhcccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG-------TLTSSYYRGAH 86 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d 86 (210)
+|+++|++|+|||||+++|.+..... ..+....+.....+.+. +..+++|||||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 78999999999999999998765322 22222222222223333 4678999999964332 12234688999
Q ss_pred EEEEEEeCCCHhh-HHHHHHHHHH-----------------------------------------HHhhh----------
Q 028315 87 GIILVYDVTRRET-FTNLSSVWAK-----------------------------------------EVELY---------- 114 (210)
Q Consensus 87 ~~i~v~d~~~~~~-~~~~~~~~~~-----------------------------------------~~~~~---------- 114 (210)
++++|+|++++.. ...+. ..+. .+..+
T Consensus 80 ~il~V~D~t~~~~~~~~~~-~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 80 LILMVLDATKPEGHREILE-RELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred EEEEEecCCcchhHHHHHH-HHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 9999999987653 22222 1111 11111
Q ss_pred -------------ccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 115 -------------STNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 115 -------------~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
....-.|+++|+||+|+.. .++...++.. ..++++||++|.|++++|+.+.+.+-
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0012358999999999853 3344444433 35899999999999999999988654
No 207
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.82 E-value=2.2e-19 Score=135.68 Aligned_cols=112 Identities=19% Similarity=0.194 Sum_probs=81.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-----------------CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-----------------PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTL 77 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 77 (210)
||+++|+.|+|||||+++|+...... .....+.+.......+...+.++.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 68999999999999999997642110 0112233344444455556788999999999999888
Q ss_pred hhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 78 TSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
+..+++.+|++++|+|+.+....+. . .+...+. ..+.|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~-~-~~~~~~~----~~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT-R-ILWRLLR----KLNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH-H-HHHHHHH----HcCCCEEEEEECcccc
Confidence 8889999999999999998754332 2 2333333 2578999999999985
No 208
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=5.9e-19 Score=147.97 Aligned_cols=154 Identities=20% Similarity=0.166 Sum_probs=101.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCCC-----CCceeeEEEEEEEE------------ECCeEEEEEEEeCCCCcccc
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHDP-----SPTIGVDFKIKLLT------------VGGKRLKLTIWDTAGQERFG 75 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~~------------~~~~~~~~~l~Dt~G~~~~~ 75 (210)
.--|+++|++++|||||+++|.+..+... +++.+..+...... +......+.||||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 34589999999999999999988766432 22223222211100 00011248899999999999
Q ss_pred cchhhhhccccEEEEEEeCCC---HhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc------------CHH
Q 028315 76 TLTSSYYRGAHGIILVYDVTR---RETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV------------TRE 140 (210)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~------------~~~ 140 (210)
.++..+++.+|++++|+|+++ +++++.+. .+. ..+.|+++++||+|+.+.... ..+
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~----~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILR----MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHH----HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 999999999999999999997 44443332 121 247899999999998632100 000
Q ss_pred H------------HHHHHH------------Hc--CCeEEEecccCCcCHHHHHHHHHHHH
Q 028315 141 E------------GMILAQ------------EH--KCLFLECSAKNTEDVKQCFKDLLYKI 175 (210)
Q Consensus 141 ~------------~~~~~~------------~~--~~~~~~~sa~~~~~i~~l~~~i~~~~ 175 (210)
. ...+.. .+ .++++.+||++|.|+++++.++....
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0 001111 11 35799999999999999999886543
No 209
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.82 E-value=2.1e-19 Score=145.99 Aligned_cols=162 Identities=15% Similarity=0.111 Sum_probs=103.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCC--CCceeeEEEEE--------------------EEEECC------eEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDP--SPTIGVDFKIK--------------------LLTVGG------KRLK 62 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~--------------------~~~~~~------~~~~ 62 (210)
...++|+++|+.++|||||+++|.+...... ....+.+.... ....+. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4579999999999999999999965322111 00111111110 000011 1467
Q ss_pred EEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC--HH
Q 028315 63 LTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT--RE 140 (210)
Q Consensus 63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~ 140 (210)
+.+|||||++.|...+...+..+|++++|+|++++.........+ ..+.. ....|+++++||+|+.+..... .+
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l-~~l~~---~gi~~iIVvvNK~Dl~~~~~~~~~~~ 157 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHL-MALEI---IGIKNIVIVQNKIDLVSKEKALENYE 157 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHH-HHHHH---cCCCeEEEEEEccccCCHHHHHHHHH
Confidence 999999999999887777788899999999999753111111122 22221 1235789999999986532211 12
Q ss_pred HHHHHHHHc---CCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 141 EGMILAQEH---KCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 141 ~~~~~~~~~---~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
+...+.... +++++++||++|.|+++++++|...+.
T Consensus 158 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 158 EIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 233333322 568999999999999999999987654
No 210
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=1.8e-18 Score=121.44 Aligned_cols=155 Identities=23% Similarity=0.270 Sum_probs=115.4
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC---------CC----CceeeEEEEEEEEECCeEEEEEEEeCCCCccccc
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD---------PS----PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT 76 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---------~~----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 76 (210)
.-+..||+++|+.++||||+++.+....... .. .|...++.. ..+ ..+..+.|+|||||++|..
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~--~~~-~~~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--IEL-DEDTGVHLFGTPGQERFKF 83 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc--eEE-cCcceEEEecCCCcHHHHH
Confidence 3567999999999999999999998766311 11 112222221 112 2235788899999999999
Q ss_pred chhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHc--CCeEE
Q 028315 77 LTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEH--KCLFL 154 (210)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~ 154 (210)
.|....+++.++++++|.+.+..+. .. ....++.. ...+|++|++||.|+.+. ..+++.+++.... ..+++
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~~-a~-~ii~f~~~---~~~ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi 156 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITFH-AE-EIIDFLTS---RNPIPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVI 156 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcchH-HH-HHHHHHhh---ccCCCEEEEeeccccCCC--CCHHHHHHHHHhccCCCcee
Confidence 9999999999999999999998883 22 34444443 233999999999999654 4555555555443 78899
Q ss_pred EecccCCcCHHHHHHHHHHH
Q 028315 155 ECSAKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 155 ~~sa~~~~~i~~l~~~i~~~ 174 (210)
+++|.++.+..+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999998888766
No 211
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.81 E-value=7.4e-22 Score=138.04 Aligned_cols=185 Identities=31% Similarity=0.509 Sum_probs=146.0
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEEC-CeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVG-GKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
.+.-++++|+|.-|+|||+++.++....|+. +..+++.++......-+ ...++++|||..|+++|..+..-+++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 4667899999999999999999999888877 77777777766554443 445799999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCCccC-HHHHHHHHHHcCCe-EEEecccCCc
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYST---NQDCVKILVGNKVDRDSERAVT-REEGMILAQEHKCL-FLECSAKNTE 162 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~-~~~~sa~~~~ 162 (210)
.++|||+++..+|+... .|...+..... ....|+++..||+|........ ......+.++.|+. .+++|++.+.
T Consensus 102 ~~iVfdvt~s~tfe~~s-kwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVS-KWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred eEEEEEccccccccHHH-HHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 99999999999999999 78887755432 2457888999999986543332 34566777777775 9999999999
Q ss_pred CHHHHHHHHHHHHHccc-hhhhcccccccccccc
Q 028315 163 DVKQCFKDLLYKILEVP-SLLEQGSAVVKNQILK 195 (210)
Q Consensus 163 ~i~~l~~~i~~~~~~~~-~~~~~~~~~~~~~~~~ 195 (210)
+++|.-..+++.+.-+. +..+........+.+.
T Consensus 181 ni~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~~l~ 214 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVNDEQPIKSSAVDGDKINLR 214 (229)
T ss_pred ChhHHHHHHHHHHHhhccCCcccccccccccCcc
Confidence 99999999999887766 4444444444333333
No 212
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.80 E-value=6.2e-19 Score=143.19 Aligned_cols=163 Identities=14% Similarity=0.124 Sum_probs=102.3
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEEE----E----------------EEC------CeE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIKL----L----------------TVG------GKR 60 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~----~----------------~~~------~~~ 60 (210)
.+.+.++|+++|+.++|||||+.+|.+..... .....+.+..... . ..+ ...
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 34567999999999999999999995532111 1111122221110 0 000 013
Q ss_pred EEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHh-hHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC-
Q 028315 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRE-TFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT- 138 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~- 138 (210)
..+.||||||++.|..........+|++++|+|++++. ..+... .+. .+.. ....|+++|+||+|+.+.....
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~-~l~~---~~i~~iiVVlNK~Dl~~~~~~~~ 159 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLM-ALDI---IGIKNIVIVQNKIDLVSKERALE 159 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHH-HHHH---cCCCcEEEEEEeeccccchhHHH
Confidence 68999999999888665555566789999999999653 112111 221 2221 1234789999999996543221
Q ss_pred -HHHHHHHHHH---cCCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 139 -REEGMILAQE---HKCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 139 -~~~~~~~~~~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
.++...+... .+.+++++||++|.|+++++++|.+.+.
T Consensus 160 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 160 NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 1223333322 2468999999999999999999988764
No 213
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.80 E-value=9.7e-19 Score=120.10 Aligned_cols=135 Identities=23% Similarity=0.247 Sum_probs=95.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCC----cccccchhhhhccccEEEE
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ----ERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----~~~~~~~~~~~~~~d~~i~ 90 (210)
||+++|+.|+|||||+++|.+... .+..|....+. =.++||||- ..+.........++|.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 789999999999999999966444 34344333222 134699993 3333333344568999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCe-EEEecccCCcCHHHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~l~~ 169 (210)
|.|++++.+ .+-+.+.. .-..|+|-|+||+|+... ....+.+..+.+..|+. +|++|+.+|+|+++|.+
T Consensus 70 l~dat~~~~------~~pP~fa~---~f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 70 LQDATEPRS------VFPPGFAS---MFNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred EecCCCCCc------cCCchhhc---ccCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 999998754 22233322 235799999999999732 34556677777777875 89999999999999988
Q ss_pred HHH
Q 028315 170 DLL 172 (210)
Q Consensus 170 ~i~ 172 (210)
+|-
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 763
No 214
>PRK12736 elongation factor Tu; Reviewed
Probab=99.79 E-value=2.5e-18 Score=139.19 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=106.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCC---------------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVH---------------DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT 76 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 76 (210)
..+||+++|+.++|||||+++|++.... +.....+.+.......+......+.||||||++.|..
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~ 90 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHH
Confidence 4799999999999999999999763110 0112445555555555655567889999999998876
Q ss_pred chhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCCccC---HHHHHHHHHHcC--
Q 028315 77 LTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCV-KILVGNKVDRDSERAVT---REEGMILAQEHK-- 150 (210)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 150 (210)
.....+..+|++++|+|+.++..-+... .+ ..+. ..++| ++|++||+|+.+..+.. .++...+....+
T Consensus 91 ~~~~~~~~~d~~llVvd~~~g~~~~t~~-~~-~~~~----~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 91 NMITGAAQMDGAILVVAATDGPMPQTRE-HI-LLAR----QVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHhhCCEEEEEEECCCCCchhHHH-HH-HHHH----HcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 6666678899999999998753322222 22 2222 24667 67889999986433221 123334433343
Q ss_pred ---CeEEEecccCCc--------CHHHHHHHHHHHHH
Q 028315 151 ---CLFLECSAKNTE--------DVKQCFKDLLYKIL 176 (210)
Q Consensus 151 ---~~~~~~sa~~~~--------~i~~l~~~i~~~~~ 176 (210)
++++.+||.+|. ++.++++.+.+.+.
T Consensus 165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 579999999983 56777777776654
No 215
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.79 E-value=3.3e-18 Score=144.66 Aligned_cols=157 Identities=15% Similarity=0.106 Sum_probs=102.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEEEEEEC-CeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIKLLTVG-GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
-|+++|+.++|||||+++|.+..... .....+.+......... ..+..+.||||||++.|...+...+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 48999999999999999998643222 11112333332222221 1234589999999999977777778999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCCccC--HHHHHHHHHHcC---CeEEEecccCCcCHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCV-KILVGNKVDRDSERAVT--REEGMILAQEHK---CLFLECSAKNTEDVK 165 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~sa~~~~~i~ 165 (210)
+|+.++..-+... ....+. ..+.| ++||+||+|+.+...+. .++...+....+ .+++.+||++|.|++
T Consensus 82 Vda~eg~~~qT~e--hl~il~----~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 82 VACDDGVMAQTRE--HLAILQ----LTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EECCCCCcHHHHH--HHHHHH----HcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 9998742211111 122222 13345 57999999996532221 123333433333 679999999999999
Q ss_pred HHHHHHHHHHHc
Q 028315 166 QCFKDLLYKILE 177 (210)
Q Consensus 166 ~l~~~i~~~~~~ 177 (210)
++++.|.+....
T Consensus 156 ~L~~~L~~~~~~ 167 (614)
T PRK10512 156 ALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHhhcc
Confidence 999999875543
No 216
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.79 E-value=1.9e-18 Score=129.04 Aligned_cols=112 Identities=26% Similarity=0.304 Sum_probs=79.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCC------------------CCceeeEEEEEEEEE-----CCeEEEEEEEeCCCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDP------------------SPTIGVDFKIKLLTV-----GGKRLKLTIWDTAGQ 71 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~ 71 (210)
||+++|+.++|||||+++|+....... ....+.+.......+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987543321 011222222222222 345689999999999
Q ss_pred cccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
..|......++..+|++++|+|+.+..++... .+..... ..+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~--~~~~~~~----~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE--RLIRHAI----LEGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHH----HcCCCEEEEEECcccC
Confidence 99988888889999999999999887655432 2222222 2458999999999975
No 217
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.79 E-value=3.4e-18 Score=122.54 Aligned_cols=150 Identities=21% Similarity=0.213 Sum_probs=97.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc----------cccchhhhhc-
Q 028315 16 ILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER----------FGTLTSSYYR- 83 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~- 83 (210)
|+++|.+|+|||||++.+.+..+.. ..++.+.+........+. .+.+|||||... +......++.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 7999999999999999998544433 566666555544444443 789999999533 2233333443
Q ss_pred --cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC--HHHHHHHHH--HcCCeEEEec
Q 028315 84 --GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT--REEGMILAQ--EHKCLFLECS 157 (210)
Q Consensus 84 --~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~--~~~~~~~~~s 157 (210)
..+++++++|..+..+.... .....+. ..+.|+++++||+|+....... ......... ....+++++|
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~----~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDL--EMLDWLE----ELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHH--HHHHHHH----HcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 35788999998865322111 1222222 2357999999999985332211 111111121 2345799999
Q ss_pred ccCCcCHHHHHHHHHHH
Q 028315 158 AKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 158 a~~~~~i~~l~~~i~~~ 174 (210)
|+++.++++++++|.+.
T Consensus 153 a~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 153 SLKGQGIDELRALIEKW 169 (170)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999998765
No 218
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.78 E-value=7.6e-18 Score=141.76 Aligned_cols=155 Identities=20% Similarity=0.208 Sum_probs=100.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCC-----ceeeEEEEEEEE--ECCeE-----E-----EEEEEeCCCCcc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSP-----TIGVDFKIKLLT--VGGKR-----L-----KLTIWDTAGQER 73 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~-----~-----~~~l~Dt~G~~~ 73 (210)
.++..|+++|++++|||||+++|.+.......+ +.+.++...... ..+.. . .+.||||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 455679999999999999999997665433222 223222211100 00111 1 278999999999
Q ss_pred cccchhhhhccccEEEEEEeCCC---HhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc----C--------
Q 028315 74 FGTLTSSYYRGAHGIILVYDVTR---RETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV----T-------- 138 (210)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~-------- 138 (210)
|..++...++.+|++++|+|+++ +++++.+. .+. ..+.|+++++||+|+.+.... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~----~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILK----RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHH----HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 99888888899999999999997 45544332 121 247899999999998521000 0
Q ss_pred HHH-----------H-HHHHH------------H--cCCeEEEecccCCcCHHHHHHHHHHH
Q 028315 139 REE-----------G-MILAQ------------E--HKCLFLECSAKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 139 ~~~-----------~-~~~~~------------~--~~~~~~~~sa~~~~~i~~l~~~i~~~ 174 (210)
... . ..+.. . ..++++++||.+|.|+++++..+...
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 000 0 01110 0 12569999999999999999887643
No 219
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.78 E-value=9.9e-19 Score=131.07 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=95.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCC------------------------------CCCCceeeEEEEEEEEECCeEEEEE
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVH------------------------------DPSPTIGVDFKIKLLTVGGKRLKLT 64 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (210)
||+++|+.++|||||+.+|+...-. ......+.+.......+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999998642110 0112334455555555655678999
Q ss_pred EEeCCCCcccccchhhhhccccEEEEEEeCCCHhh---H---HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC--c
Q 028315 65 IWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRET---F---TNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER--A 136 (210)
Q Consensus 65 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~ 136 (210)
+|||||+..|...+...++.+|++++|+|++++.. | ......+. .... ....|+++++||+|+.... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART---LGVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH---cCCCeEEEEEEccccccccccH
Confidence 99999998877666667788999999999998421 1 11111222 1211 2336899999999986321 1
Q ss_pred cC----HHHHHHHHHHc-----CCeEEEecccCCcCHHH
Q 028315 137 VT----REEGMILAQEH-----KCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 137 ~~----~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~ 166 (210)
.. .++...+.... .++++.+||++|.|+++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 10 11122223333 25699999999999873
No 220
>CHL00071 tufA elongation factor Tu
Probab=99.78 E-value=7.9e-18 Score=136.94 Aligned_cols=156 Identities=13% Similarity=0.052 Sum_probs=103.0
Q ss_pred CCCCCCCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCC---------------CCCCceeeEEEEEEEEECCeEEEEEE
Q 028315 1 MGSKVGNNSYDYSFKILLIGDSGVGKSSILLSLISNSVH---------------DPSPTIGVDFKIKLLTVGGKRLKLTI 65 (210)
Q Consensus 1 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l 65 (210)
|+..+.... -..++|+++|++++|||||+++|++.... ......+.+.......+.....++.|
T Consensus 1 ~~~~~~~~~-~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~ 79 (409)
T CHL00071 1 MAREKFERK-KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAH 79 (409)
T ss_pred CchhhccCC-CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEE
Confidence 444444443 45699999999999999999999864211 01122455555544455555667889
Q ss_pred EeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCCccC---HHH
Q 028315 66 WDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCV-KILVGNKVDRDSERAVT---REE 141 (210)
Q Consensus 66 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~ 141 (210)
+||||+..|.......+..+|++++|+|+.....-+... .+ ..+. ..++| +++++||+|+.+..+.. .++
T Consensus 80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~-~~-~~~~----~~g~~~iIvvvNK~D~~~~~~~~~~~~~~ 153 (409)
T CHL00071 80 VDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKE-HI-LLAK----QVGVPNIVVFLNKEDQVDDEELLELVELE 153 (409)
T ss_pred EECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHH-HH-HHHH----HcCCCEEEEEEEccCCCCHHHHHHHHHHH
Confidence 999999888777777788999999999998754322222 22 2222 24567 77899999996533221 123
Q ss_pred HHHHHHHcC-----CeEEEecccCCcC
Q 028315 142 GMILAQEHK-----CLFLECSAKNTED 163 (210)
Q Consensus 142 ~~~~~~~~~-----~~~~~~sa~~~~~ 163 (210)
...+....+ ++++.+||.+|.+
T Consensus 154 l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 154 VRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHhCCCCCcceEEEcchhhccc
Confidence 333433333 6799999999874
No 221
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=5.6e-18 Score=140.34 Aligned_cols=157 Identities=18% Similarity=0.167 Sum_probs=116.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc------ccchhhhh--cc
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF------GTLTSSYY--RG 84 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~~--~~ 84 (210)
..+|+++|+||+|||||+|++++... ...+-+|.|...++......+.++.++|+||.-.. +...+.++ ..
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 35699999999999999999966554 45566666677777666656666888899994222 22333443 35
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCH
Q 028315 85 AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDV 164 (210)
Q Consensus 85 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 164 (210)
+|+++-|+|+++-++-- . .-+++++ -+.|+++++|++|....+.+.. +...+.+.+|+|++.++|++|.|+
T Consensus 82 ~D~ivnVvDAtnLeRnL--y-ltlQLlE-----~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 82 PDLIVNVVDATNLERNL--Y-LTLQLLE-----LGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCEEEEEcccchHHHHH--H-HHHHHHH-----cCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCH
Confidence 79999999999875422 1 2223332 6789999999999876655543 567788999999999999999999
Q ss_pred HHHHHHHHHHHHccc
Q 028315 165 KQCFKDLLYKILEVP 179 (210)
Q Consensus 165 ~~l~~~i~~~~~~~~ 179 (210)
++++..+.+....+.
T Consensus 153 ~~l~~~i~~~~~~~~ 167 (653)
T COG0370 153 EELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHHhccccc
Confidence 999999887655444
No 222
>PRK12735 elongation factor Tu; Reviewed
Probab=99.77 E-value=9.2e-18 Score=136.01 Aligned_cols=159 Identities=13% Similarity=0.059 Sum_probs=105.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhC-------CC---C-----CCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISN-------SV---H-----DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG 75 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~-------~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (210)
-+.++|+++|++++|||||+++|++. .+ . ......+.+.......+.....++.|+||||++.|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 35799999999999999999999862 10 0 011234555555555555556688999999998887
Q ss_pred cchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCCCCccC---HHHHHHHHHHcC-
Q 028315 76 TLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKI-LVGNKVDRDSERAVT---REEGMILAQEHK- 150 (210)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 150 (210)
......+..+|++++|+|+.+....+... .+ ..+. ..++|.+ +++||+|+.+..+.. .++...+...++
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt~e-~l-~~~~----~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQTRE-HI-LLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhHHH-HH-HHHH----HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 66667778899999999998753322221 22 2222 2457755 679999996432211 123334444432
Q ss_pred ----CeEEEecccCCc----------CHHHHHHHHHHHH
Q 028315 151 ----CLFLECSAKNTE----------DVKQCFKDLLYKI 175 (210)
Q Consensus 151 ----~~~~~~sa~~~~----------~i~~l~~~i~~~~ 175 (210)
++++.+||.+|. ++..+++.|.+.+
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 679999999984 5667777766654
No 223
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=7.3e-18 Score=136.63 Aligned_cols=146 Identities=15% Similarity=0.076 Sum_probs=97.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCC-------C------C--CCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNS-------V------H--DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG 75 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~-------~------~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (210)
-+.++|+++|+.++|||||+++|++.. + . ......+.+.......+......+.||||||++.|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 457999999999999999999997420 0 0 011224555555555666666789999999999887
Q ss_pred cchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCCCCccC---HHHHHHHHHHcC-
Q 028315 76 TLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKI-LVGNKVDRDSERAVT---REEGMILAQEHK- 150 (210)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 150 (210)
......+..+|++++|+|+.++...+... .+. .+. ..++|.+ +++||+|+.+..+.. .++...+....+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~e-~l~-~~~----~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQTRE-HIL-LAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHH-HHH----HcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 66656667889999999998753322222 222 222 2356654 689999986533221 123444454443
Q ss_pred ----CeEEEecccCCc
Q 028315 151 ----CLFLECSAKNTE 162 (210)
Q Consensus 151 ----~~~~~~sa~~~~ 162 (210)
++++.+||.+|.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 164 PGDDTPIIRGSALKAL 179 (394)
T ss_pred CccCccEEECcccccc
Confidence 689999999874
No 224
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.8e-17 Score=118.93 Aligned_cols=158 Identities=20% Similarity=0.221 Sum_probs=112.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC----------Ccccccchh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNS-VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAG----------QERFGTLTS 79 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~~~ 79 (210)
+...-|+++|.++||||||||+|++.. ....+.|+|.|.......+++. +.++|.|| .+.+..+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 345678999999999999999999976 4668899998888877777765 67789999 233444555
Q ss_pred hhhc---cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHH---HHHHHHHcCCe-
Q 028315 80 SYYR---GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREE---GMILAQEHKCL- 152 (210)
Q Consensus 80 ~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~- 152 (210)
.|++ +-.++++++|+..+..-.+. .+...+. ..+.|++|++||+|.....+..... ...+.......
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~----~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~ 172 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLL----ELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQ 172 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHH----HcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccc
Confidence 5554 35789999999987543322 3444444 4789999999999987654443211 11222222222
Q ss_pred -EEEecccCCcCHHHHHHHHHHHHHc
Q 028315 153 -FLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 153 -~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
++..|+.++.|++++...|.+.+..
T Consensus 173 ~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 173 WVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred eEEEEecccccCHHHHHHHHHHHhhc
Confidence 8889999999999999998887654
No 225
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.76 E-value=2.9e-18 Score=138.91 Aligned_cols=165 Identities=25% Similarity=0.312 Sum_probs=125.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
...+||+++|+.|+||||||-.+....|.+..|.....+. ....+....+...+.||+..+..+.....-++.+|++.+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~-IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRIL-IPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccc-cCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 4579999999999999999999999998873333322222 112344455668889998766655555677899999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCCccCHHH-HHHHHHHcC-C-eEEEecccCCcCHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSERAVTREE-GMILAQEHK-C-LFLECSAKNTEDVKQ 166 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~~~sa~~~~~i~~ 166 (210)
+|+.+++.+.+.+..+|+++++.... ..++|+|+|+||.|.......+.+. ...++..+. + ..++|||++..++.+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e 165 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE 165 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence 99999999999999999999987753 3679999999999987654443333 555555553 2 389999999999999
Q ss_pred HHHHHHHHHH
Q 028315 167 CFKDLLYKIL 176 (210)
Q Consensus 167 l~~~i~~~~~ 176 (210)
+|-...+.+.
T Consensus 166 ~fYyaqKaVi 175 (625)
T KOG1707|consen 166 LFYYAQKAVI 175 (625)
T ss_pred hhhhhhheee
Confidence 9877666543
No 226
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.6e-17 Score=133.75 Aligned_cols=166 Identities=18% Similarity=0.202 Sum_probs=123.2
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC--------------CCCceeeEEEEEEEEE---CCeEEEEEEEeCCCC
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD--------------PSPTIGVDFKIKLLTV---GGKRLKLTIWDTAGQ 71 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~ 71 (210)
+.++.-|+.|+-+..-|||||..||+...-.. .....|++....+..+ ++..+.++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 44777899999999999999999997543211 1123344444333222 356699999999999
Q ss_pred cccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC-HHHHHHHHHHcC
Q 028315 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT-REEGMILAQEHK 150 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 150 (210)
-+|.......+..||++++|+|++.+...+.+...|+. ++ .+..+|+|+||+|++..+.-. ..+...+.....
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lA-fe-----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~ 209 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLA-FE-----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPP 209 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHH-HH-----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999888888744444 33 577899999999997543211 122233333345
Q ss_pred CeEEEecccCCcCHHHHHHHHHHHHHccch
Q 028315 151 CLFLECSAKNTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 151 ~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 180 (210)
.+++.+||++|.|+++++++|++.+..-..
T Consensus 210 ~~~i~vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 210 AEVIYVSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred cceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence 579999999999999999999999875443
No 227
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.75 E-value=5.7e-17 Score=121.54 Aligned_cols=152 Identities=16% Similarity=0.115 Sum_probs=94.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCC------------------------ceeeEEEEE-------------EEEEC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSP------------------------TIGVDFKIK-------------LLTVG 57 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~------------------------~~~~~~~~~-------------~~~~~ 57 (210)
||+++|+.++|||||+.+|..+.+..... ..+.+.... ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998765533110 000000000 00111
Q ss_pred CeEEEEEEEeCCCCcccccchhhhhc--cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC
Q 028315 58 GKRLKLTIWDTAGQERFGTLTSSYYR--GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER 135 (210)
Q Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 135 (210)
..+..+.++||||++.|.......+. .+|++++|+|+..+..-... .+...+. ..++|+++|+||+|+.+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~--~~l~~l~----~~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTK--EHLGLAL----ALNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHH--HHHHHHH----HcCCCEEEEEECccccCHH
Confidence 22457889999999988655544443 68999999999876432222 2333333 3568999999999985432
Q ss_pred ccCH--HHHHHHHH--------------------------HcCCeEEEecccCCcCHHHHHHHHH
Q 028315 136 AVTR--EEGMILAQ--------------------------EHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 136 ~~~~--~~~~~~~~--------------------------~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
.+.. ++...+.. ...+++|.+||.+|.|+++++..|.
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 2211 11111111 1124799999999999999776653
No 228
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=5e-17 Score=123.25 Aligned_cols=154 Identities=21% Similarity=0.251 Sum_probs=104.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc----cccchhh---hhcccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER----FGTLTSS---YYRGAH 86 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~---~~~~~d 86 (210)
.|.++|.|++|||||++.+...+... .++.++..-....+.+++.. ++.+-|.||.-. ...+-.. +++.++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 47899999999999999998887644 33322222222233333332 388889999321 1222233 456799
Q ss_pred EEEEEEeCCCH---hhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEecccCC
Q 028315 87 GIILVYDVTRR---ETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC-LFLECSAKNT 161 (210)
Q Consensus 87 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~ 161 (210)
..++|+|++.+ ..++.+. .+..+++.+.. ....|.++|+||+|+++. .......+...+.- .++++||+.+
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~-lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQ-LLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred eEEEEEECCCcccCCHHHHHH-HHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeeccc
Confidence 99999999998 6777777 44444544432 467899999999998522 11223556666644 4999999999
Q ss_pred cCHHHHHHHHHH
Q 028315 162 EDVKQCFKDLLY 173 (210)
Q Consensus 162 ~~i~~l~~~i~~ 173 (210)
+++.++++.|.+
T Consensus 353 egl~~ll~~lr~ 364 (366)
T KOG1489|consen 353 EGLEELLNGLRE 364 (366)
T ss_pred cchHHHHHHHhh
Confidence 999999887754
No 229
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.74 E-value=2.2e-17 Score=123.29 Aligned_cols=169 Identities=20% Similarity=0.230 Sum_probs=109.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEeCCCCcccc-----cchhhhhccccEE
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTV-GGKRLKLTIWDTAGQERFG-----TLTSSYYRGAHGI 88 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----~~~~~~~~~~d~~ 88 (210)
||+++|+.++||||+.+.++.+..+......+.|.......+ ......+.+||+||+..+- ......+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 799999999999998888876665554444444444444344 2445689999999987553 3467789999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCCc--cC----HHHHHHHHHHcC---CeEEEecc
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSERA--VT----REEGMILAQEHK---CLFLECSA 158 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~--~~----~~~~~~~~~~~~---~~~~~~sa 158 (210)
|+|+|+.+.+..+++. ++...+..... +++..+.|.+.|+|+..+.. .. .+.........+ +.++.||.
T Consensus 81 IyV~D~qs~~~~~~l~-~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLA-YLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-STCHHHHH-HHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEcccccHHHHHH-HHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999999555455555 66665554332 67889999999999854211 11 111222223344 67999999
Q ss_pred cCCcCHHHHHHHHHHHHHccchhhhcc
Q 028315 159 KNTEDVKQCFKDLLYKILEVPSLLEQG 185 (210)
Q Consensus 159 ~~~~~i~~l~~~i~~~~~~~~~~~~~~ 185 (210)
.+ ..+-+.|..+++.+..+.+..+..
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP~~~~le~~ 185 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIPNLSTLENL 185 (232)
T ss_dssp TS-THHHHHHHHHHHTTSTTHCCCCCC
T ss_pred cC-cHHHHHHHHHHHHHcccHHHHHHH
Confidence 98 588999999999988777666554
No 230
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.73 E-value=1.2e-16 Score=119.34 Aligned_cols=112 Identities=21% Similarity=0.302 Sum_probs=79.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCC---------------CceeeEEEEE--EEEEC--------CeEEEEEEEeCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPS---------------PTIGVDFKIK--LLTVG--------GKRLKLTIWDTA 69 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~---------------~~~~~~~~~~--~~~~~--------~~~~~~~l~Dt~ 69 (210)
||+++|+.++|||||+.+|+........ ...+.+.... ..... +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7899999999999999999754321100 0111111111 11222 347899999999
Q ss_pred CCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
|++.|.......++.+|++++|+|+.++...+... .+.... ..++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~-----~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQAL-----KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHH-----HcCCCEEEEEECCCcc
Confidence 99999999999999999999999999876555433 333322 2467999999999975
No 231
>PLN03126 Elongation factor Tu; Provisional
Probab=99.73 E-value=1.3e-16 Score=131.25 Aligned_cols=147 Identities=14% Similarity=0.055 Sum_probs=99.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCC---------------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVH---------------DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG 75 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (210)
-..+||+++|++++|||||+++|++.... ......+.+.......+...+.++.|+||||++.|.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 45799999999999999999999852110 112334455555444555556788999999999998
Q ss_pred cchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCCccCH---HHHHHHHHHc--
Q 028315 76 TLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCV-KILVGNKVDRDSERAVTR---EEGMILAQEH-- 149 (210)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~-- 149 (210)
......+..+|++++|+|+.+...-+... .|. .+. ..++| +++++||+|+.+...... ++...+....
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~qt~e-~~~-~~~----~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMPQTKE-HIL-LAK----QVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHH-HHH----HcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 77777788999999999999764333322 332 222 24667 778999999865322211 1233333332
Q ss_pred ---CCeEEEecccCCcC
Q 028315 150 ---KCLFLECSAKNTED 163 (210)
Q Consensus 150 ---~~~~~~~sa~~~~~ 163 (210)
.++++.+|+.+|.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 46799999998854
No 232
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=1.1e-16 Score=123.06 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=81.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCC--CC-------------C------CceeeEEEEEEEEECCeEEEEEEEeCCCCc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVH--DP-------------S------PTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~-------------~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (210)
-||+++|++|+|||||+++|+...-. .. . ...+.+.......+...++.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 47999999999999999999753211 00 0 011333444445566677899999999999
Q ss_pred ccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028315 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE 134 (210)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 134 (210)
.|.......++.+|++++|+|+++...... . .+..... ..++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~-~-~i~~~~~----~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT-R-KLFEVCR----LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHH-H-HHHHHHH----hcCCCEEEEEECCccCCC
Confidence 888777778899999999999987643222 2 2222222 357899999999998543
No 233
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.73 E-value=1.1e-16 Score=133.27 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=81.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCC--CCC-------------------CCCceeeEEEEEEEEECCeEEEEEEEeCC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNS--VHD-------------------PSPTIGVDFKIKLLTVGGKRLKLTIWDTA 69 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 69 (210)
.+..+|+++|++++|||||+++|+... ... .....+.++......+...++.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 456699999999999999999996421 100 01112333444444555567889999999
Q ss_pred CCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
|+..|.......++.+|++++|+|+.+..... .. .+..... ..++|+++++||+|+.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~-~l~~~~~----~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TR-KLMEVCR----LRDTPIFTFINKLDRD 144 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HH-HHHHHHH----hcCCCEEEEEECCccc
Confidence 99999877777899999999999998864322 12 2222222 3678999999999974
No 234
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=8.9e-17 Score=122.66 Aligned_cols=160 Identities=19% Similarity=0.146 Sum_probs=105.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc-----ccc-chh--hhhc
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER-----FGT-LTS--SYYR 83 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~~~-~~~--~~~~ 83 (210)
....|++.|.||||||||++++++... +..+.+++|......++.....++|++||||.-+ .+. ... ..++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 457789999999999999999977665 4445555555555566676677899999999311 111 111 1233
Q ss_pred -cccEEEEEEeCCCHhhH--HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccC
Q 028315 84 -GAHGIILVYDVTRRETF--TNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKN 160 (210)
Q Consensus 84 -~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 160 (210)
-.+++++++|.+....+ +.-. .+...+.. ..+.|+++|.||+|..+...+...+.. +...-+.....+++..
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~---~f~~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQI-SLLEEIKE---LFKAPIVVVINKIDIADEEKLEEIEAS-VLEEGGEEPLKISATK 320 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHH-HHHHHHHH---hcCCCeEEEEecccccchhHHHHHHHH-HHhhccccccceeeee
Confidence 36899999999976543 3333 23333333 234899999999998765444333222 3333344478899999
Q ss_pred CcCHHHHHHHHHHHHHc
Q 028315 161 TEDVKQCFKDLLYKILE 177 (210)
Q Consensus 161 ~~~i~~l~~~i~~~~~~ 177 (210)
+.+++.+...+.....+
T Consensus 321 ~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 321 GCGLDKLREEVRKTALE 337 (346)
T ss_pred hhhHHHHHHHHHHHhhc
Confidence 99999877777766443
No 235
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.72 E-value=3.7e-17 Score=132.81 Aligned_cols=148 Identities=17% Similarity=0.162 Sum_probs=95.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCC--------------------------------CCceeeEEEEEEEEECCeEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDP--------------------------------SPTIGVDFKIKLLTVGGKRL 61 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~ 61 (210)
+||+++|+.++|||||+.+|+...-... ....+.+.......+...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999964321110 01122333433444445566
Q ss_pred EEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC---
Q 028315 62 KLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT--- 138 (210)
Q Consensus 62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--- 138 (210)
++.||||||++.|.......+..+|++++|+|+..+..-+... .+. .+.. ....+++|++||+|+.+.....
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~-~~~-~~~~---~~~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR-HSY-IASL---LGIRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH-HHH-HHHH---cCCCcEEEEEEecccccchHHHHHH
Confidence 8999999999998776667788999999999998764322222 222 1221 1234688999999986422111
Q ss_pred -HHHHHHHHHHcC---CeEEEecccCCcCHHH
Q 028315 139 -REEGMILAQEHK---CLFLECSAKNTEDVKQ 166 (210)
Q Consensus 139 -~~~~~~~~~~~~---~~~~~~sa~~~~~i~~ 166 (210)
.++...+....+ ++++.+||.+|.|+++
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 112222233333 4699999999999886
No 236
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.72 E-value=4.4e-17 Score=134.44 Aligned_cols=152 Identities=17% Similarity=0.129 Sum_probs=97.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCC--------------------------------CceeeEEEEEEEEECC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPS--------------------------------PTIGVDFKIKLLTVGG 58 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~ 58 (210)
...+||+++|++++|||||+.+|+...-.... ...+.+.......+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 45699999999999999999999754321110 0112333333334455
Q ss_pred eEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC
Q 028315 59 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT 138 (210)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 138 (210)
...++.||||||++.|.......+..+|++++|+|+..+..-+... .+. .+... ...|++|++||+|+.+.....
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~-~~~-l~~~l---g~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR-HSF-IATLL---GIKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH-HHH-HHHHh---CCCceEEEEEeeccccchhHH
Confidence 5678999999999988766666679999999999998753222111 111 11111 124789999999986422211
Q ss_pred HHH----HHHHHHHc----CCeEEEecccCCcCHHHH
Q 028315 139 REE----GMILAQEH----KCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 139 ~~~----~~~~~~~~----~~~~~~~sa~~~~~i~~l 167 (210)
.++ ...+.... ..+++.+||++|.|+.++
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 111 11222222 367999999999999874
No 237
>PLN03127 Elongation factor Tu; Provisional
Probab=99.72 E-value=2.2e-16 Score=129.19 Aligned_cols=159 Identities=13% Similarity=0.037 Sum_probs=102.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhC------CCC---------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISN------SVH---------DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT 76 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 76 (210)
..+||+++|+.++|||||+++|.+. ... +.....+.+.......+...+.++.|+||||+..|..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~ 139 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVK 139 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHH
Confidence 5799999999999999999999622 110 0112245556665666666667899999999988866
Q ss_pred chhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCCccCH---HHHHHHHHHc---
Q 028315 77 LTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCV-KILVGNKVDRDSERAVTR---EEGMILAQEH--- 149 (210)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~--- 149 (210)
.....+..+|++++|+|+.++..-+.. .....+. ..++| +++++||+|+.+...... ++...+....
T Consensus 140 ~~~~g~~~aD~allVVda~~g~~~qt~--e~l~~~~----~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 140 NMITGAAQMDGGILVVSAPDGPMPQTK--EHILLAR----QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred HHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHH----HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 666666789999999999875432221 1222222 34678 578899999864322111 1222222222
Q ss_pred --CCeEEEeccc---CCcC-------HHHHHHHHHHHHH
Q 028315 150 --KCLFLECSAK---NTED-------VKQCFKDLLYKIL 176 (210)
Q Consensus 150 --~~~~~~~sa~---~~~~-------i~~l~~~i~~~~~ 176 (210)
.++++.+||. +|.| +.++++.+.+.+.
T Consensus 214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3578888875 4555 6777777766543
No 238
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.72 E-value=1.4e-16 Score=117.64 Aligned_cols=159 Identities=23% Similarity=0.234 Sum_probs=97.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceee---EEEEEEEEECCeEEEEEEEeCCCCcccccchhhh-----hc
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGV---DFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSY-----YR 83 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~-----~~ 83 (210)
++||+++|.+|+|||||+|.+++..... ...+.+. +.....+... ....+.+|||||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 3799999999999999999998865433 2222221 1111111111 12368999999975433322233 56
Q ss_pred cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc-------CHHH----HH-HH---HHH
Q 028315 84 GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV-------TREE----GM-IL---AQE 148 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-------~~~~----~~-~~---~~~ 148 (210)
.+|+++++.+. ++......|...+.. .+.|+++|+||+|+...... ..++ .+ .. ...
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~----~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQC----MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHH----hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 78998888542 244444456666654 35799999999998432110 1111 11 11 112
Q ss_pred cC---CeEEEeccc--CCcCHHHHHHHHHHHHHccch
Q 028315 149 HK---CLFLECSAK--NTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 149 ~~---~~~~~~sa~--~~~~i~~l~~~i~~~~~~~~~ 180 (210)
.+ .++|.+|+. .+.++..+.+.+...+.+.+.
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 12 259999999 579999999999999886543
No 239
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.72 E-value=6.1e-17 Score=124.52 Aligned_cols=113 Identities=20% Similarity=0.257 Sum_probs=80.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-----------------CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-----------------PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTL 77 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 77 (210)
||+++|++++|||||+++|+...-.. .....+.+.......+...+.++.+|||||+..|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 68999999999999999997421100 1122344444444444445678999999999888888
Q ss_pred hhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 78 TSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
+...++.+|++++|+|+.+...-+... .|. .+. ..++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~-~~~-~~~----~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTET-VWR-QAD----RYNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHH-HHH-HHH----HcCCCEEEEEECCCCCC
Confidence 888999999999999998764333222 222 222 35689999999999864
No 240
>PRK00049 elongation factor Tu; Reviewed
Probab=99.72 E-value=2e-16 Score=128.17 Aligned_cols=158 Identities=12% Similarity=0.059 Sum_probs=103.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCC---------------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVH---------------DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG 75 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (210)
-..+||+++|+.++|||||+++|++.... ......+.+.......+.....++.|+||||+..|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 35799999999999999999999863110 011234555555555555556688899999998887
Q ss_pred cchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCCCCccC---HHHHHHHHHHc--
Q 028315 76 TLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKI-LVGNKVDRDSERAVT---REEGMILAQEH-- 149 (210)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~-- 149 (210)
......+..+|++++|+|+..+..-+... +...+. ..+.|.+ |++||+|+....... ..+...+....
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt~~--~~~~~~----~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQTRE--HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHHHH--HHHHHH----HcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 66667788999999999998753322222 222222 2467865 689999986422211 11233333332
Q ss_pred ---CCeEEEecccCCc----------CHHHHHHHHHHH
Q 028315 150 ---KCLFLECSAKNTE----------DVKQCFKDLLYK 174 (210)
Q Consensus 150 ---~~~~~~~sa~~~~----------~i~~l~~~i~~~ 174 (210)
.++++.+||.+|. ++..+++.|.+.
T Consensus 164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 3679999999875 345555555543
No 241
>COG2262 HflX GTPases [General function prediction only]
Probab=99.71 E-value=4e-16 Score=122.52 Aligned_cols=160 Identities=19% Similarity=0.156 Sum_probs=107.2
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCc---------ccccchhhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE---------RFGTLTSSY 81 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~ 81 (210)
....|+++|.+|+|||||+|++.+..... ..-...-+.+...+.+.+ +..+.+-||-|.- .|.+....
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE- 268 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE- 268 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH-
Confidence 45689999999999999999998655432 222222233333344443 4466777999932 22222222
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCC
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNT 161 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 161 (210)
...+|.++.|+|++++...+.+. .....+.... -...|+++|.||+|+...... ...+..... ..+.+||++|
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~-~v~~vL~el~-~~~~p~i~v~NKiD~~~~~~~----~~~~~~~~~-~~v~iSA~~~ 341 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLE-AVEDVLAEIG-ADEIPIILVLNKIDLLEDEEI----LAELERGSP-NPVFISAKTG 341 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHH-HHHHHHHHcC-CCCCCEEEEEecccccCchhh----hhhhhhcCC-CeEEEEeccC
Confidence 35799999999999997666665 4455555443 356899999999997644331 111111122 5899999999
Q ss_pred cCHHHHHHHHHHHHHccch
Q 028315 162 EDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~~~~~ 180 (210)
.|++.|+..|.+.+.....
T Consensus 342 ~gl~~L~~~i~~~l~~~~~ 360 (411)
T COG2262 342 EGLDLLRERIIELLSGLRT 360 (411)
T ss_pred cCHHHHHHHHHHHhhhccc
Confidence 9999999999998875543
No 242
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.71 E-value=3e-16 Score=128.52 Aligned_cols=148 Identities=18% Similarity=0.155 Sum_probs=102.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCC------------------------------CCCCceeeEEEEEEEEECCeEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVH------------------------------DPSPTIGVDFKIKLLTVGGKRL 61 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 61 (210)
+.++|+++|+.++|||||+.+|+...-. ......+.+.......+...+.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 5699999999999999999998642110 0112234455555555666778
Q ss_pred EEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHH-------HHHHHHHHHHhhhccCCCC-cEEEEEeCCCCCC
Q 028315 62 KLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFT-------NLSSVWAKEVELYSTNQDC-VKILVGNKVDRDS 133 (210)
Q Consensus 62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~ 133 (210)
.+.++|||||+.|.......+..+|++|+|+|+.+.. |+ .....|.. .. ..++ +++|++||+|+.+
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~-~~----~~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALL-AF----TLGVKQMICCCNKMDATT 159 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHH-HH----HcCCCcEEEEEEcccCCc
Confidence 9999999999999988888899999999999999741 21 22212221 11 2455 4788999999752
Q ss_pred CCccC-------HHHHHHHHHHcC-----CeEEEecccCCcCHHH
Q 028315 134 ERAVT-------REEGMILAQEHK-----CLFLECSAKNTEDVKQ 166 (210)
Q Consensus 134 ~~~~~-------~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~ 166 (210)
. ..+ .++...+....+ ++++++||.+|.|+.+
T Consensus 160 ~-~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 P-KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred h-hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 111 234555555555 5699999999999854
No 243
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.70 E-value=5.4e-17 Score=125.33 Aligned_cols=149 Identities=20% Similarity=0.242 Sum_probs=94.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-----CCC-c-----------eeeEEEEEEEEECCeEEEEEEEeCCCCcccccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-----PSP-T-----------IGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTL 77 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-----~~~-~-----------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 77 (210)
||+++|++|+|||||+++++...... ... + .+.+.......+...++.+++|||||+..|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997533211 000 0 011122222233334578899999999888777
Q ss_pred hhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeE--EE
Q 028315 78 TSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLF--LE 155 (210)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~ 155 (210)
+...++.+|++++|+|+++........ .|.. +. ..+.|.++++||+|+.... ..+....+...++.++ +.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~~-~~----~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEK-LWEF-AD----EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHH-HH----HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence 888899999999999999875544333 3332 22 3568999999999986542 1223334444455543 44
Q ss_pred ecccCCcCHHHHHHHH
Q 028315 156 CSAKNTEDVKQCFKDL 171 (210)
Q Consensus 156 ~sa~~~~~i~~l~~~i 171 (210)
+...++.++..+.+.+
T Consensus 153 ip~~~~~~~~~~vd~~ 168 (268)
T cd04170 153 LPIGEGDDFKGVVDLL 168 (268)
T ss_pred ecccCCCceeEEEEcc
Confidence 4456655554444443
No 244
>PRK13351 elongation factor G; Reviewed
Probab=99.70 E-value=1.5e-16 Score=137.42 Aligned_cols=117 Identities=15% Similarity=0.221 Sum_probs=84.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-----------CC------CceeeEEEEEEEEECCeEEEEEEEeCCCCcc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-----------PS------PTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----------~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (210)
+...||+++|+.++|||||+++|+...... .. ...+.+.......+....+.+++|||||+..
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 467899999999999999999997532100 00 0112222222223344567899999999999
Q ss_pred cccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
|...+..+++.+|++++|+|+++....+... .|.. +. ..++|+++++||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~~~-~~----~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTET-VWRQ-AD----RYGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHH-HH----hcCCCEEEEEECCCCCC
Confidence 9888889999999999999999876665443 4433 22 35789999999999853
No 245
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.70 E-value=4.2e-16 Score=119.58 Aligned_cols=162 Identities=19% Similarity=0.158 Sum_probs=110.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc----ccchh---hhhccccE
Q 028315 16 ILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF----GTLTS---SYYRGAHG 87 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~~---~~~~~~d~ 87 (210)
|.++|.|++|||||++.++..+... .+|.++..-....+.+ ...-.+++-|.||.-+- ..+-. .+++.+.+
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 5799999999999999998887655 4444333333333344 33446888899993211 12222 34567899
Q ss_pred EEEEEeCCCHh---hHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEE-ecccCCc
Q 028315 88 IILVYDVTRRE---TFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLE-CSAKNTE 162 (210)
Q Consensus 88 ~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~sa~~~~ 162 (210)
++.|+|++..+ ..++.. .+..++..+.. ..++|.+||+||+|+....+........+....+...+. +||.++.
T Consensus 241 L~hviD~s~~~~~dp~~~~~-~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQ-TIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE 319 (369)
T ss_pred eEEEEecCcccCCCHHHHHH-HHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence 99999999654 355555 55666666643 367899999999997554444344444555555544222 9999999
Q ss_pred CHHHHHHHHHHHHHccc
Q 028315 163 DVKQCFKDLLYKILEVP 179 (210)
Q Consensus 163 ~i~~l~~~i~~~~~~~~ 179 (210)
|++++...+.+.+.+.+
T Consensus 320 g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 320 GLDELLRALAELLEETK 336 (369)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999988887765
No 246
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=7.4e-17 Score=111.11 Aligned_cols=155 Identities=18% Similarity=0.201 Sum_probs=118.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
.-|++++|..|+|||||++.|.......+.||.-.+-.. +.-.+..++-+|++||..-+..|..++..+|++++.+
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~----l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE----LSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV 95 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccCCCcCCChHH----heecCceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence 458999999999999999999888777766665544442 2224567888999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHH---HHHcC--------------CeEEE
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMIL---AQEHK--------------CLFLE 155 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~~--------------~~~~~ 155 (210)
|+.|.+.|.+.+..+...+.... ....|+++.+||+|.+.+. ++++.+.. ....+ ..+|.
T Consensus 96 da~d~er~~es~~eld~ll~~e~-la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm 172 (193)
T KOG0077|consen 96 DAYDQERFAESKKELDALLSDES-LATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM 172 (193)
T ss_pred ehhhHHHhHHHHHHHHHHHhHHH-HhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence 99999999999866666555443 5789999999999987653 33332211 11111 13788
Q ss_pred ecccCCcCHHHHHHHHHHH
Q 028315 156 CSAKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 156 ~sa~~~~~i~~l~~~i~~~ 174 (210)
||...+.+-.+.|.|+.+.
T Consensus 173 csi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 173 CSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEccCccceeeeehhhh
Confidence 9999888877888877654
No 247
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.70 E-value=4.3e-16 Score=127.68 Aligned_cols=151 Identities=19% Similarity=0.165 Sum_probs=99.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCceeeEEEEEEEEECCeE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSV--H----------------------------DPSPTIGVDFKIKLLTVGGKR 60 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (210)
-..+||+++|+.++|||||+.+|+...- . ......+.+.......+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 3569999999999999999999875211 0 011223445555555566667
Q ss_pred EEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhh---H---HHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCC
Q 028315 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRET---F---TNLSSVWAKEVELYSTNQDCV-KILVGNKVDRDS 133 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 133 (210)
..+.|+|||||+.|.......+..+|++++|+|+..+.- | ....+.|.. +. ..++| ++|++||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~-~~----~~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALL-AF----TLGVKQMIVCINKMDDKT 159 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHH-HH----HcCCCeEEEEEEcccccc
Confidence 889999999999998888888899999999999987531 0 111212322 21 24555 678999999532
Q ss_pred C----CccC--HHHHHHHHHHc-----CCeEEEecccCCcCHHH
Q 028315 134 E----RAVT--REEGMILAQEH-----KCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 134 ~----~~~~--~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~ 166 (210)
. ..+. .++...+.... .++++.+|+.+|.|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1 1111 12223333322 35799999999999864
No 248
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.1e-15 Score=123.56 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=107.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECC---eEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGG---KRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
.++.=|.++|+...|||||+.++........ ..-++|.+...+.+.. ....+.|+|||||+.|..++..-..-+|+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~-EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccc-cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 3445689999999999999999977665441 1222223333333321 34578999999999999988888888999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcC---------CeEEEecc
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHK---------CLFLECSA 158 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~sa 158 (210)
++||+++++.---+... .. ...+ ..+.|++|++||+|..+. .++....-...+| ..++.+||
T Consensus 82 aILVVa~dDGv~pQTiE-AI-~hak----~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA 152 (509)
T COG0532 82 AILVVAADDGVMPQTIE-AI-NHAK----AAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSA 152 (509)
T ss_pred EEEEEEccCCcchhHHH-HH-HHHH----HCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeec
Confidence 99999999863333222 11 1111 478999999999998743 2323222222222 35899999
Q ss_pred cCCcCHHHHHHHHHHHHH
Q 028315 159 KNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 159 ~~~~~i~~l~~~i~~~~~ 176 (210)
++|.|+++|+..++-...
T Consensus 153 ~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 153 KTGEGIDELLELILLLAE 170 (509)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 999999999988765443
No 249
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.69 E-value=1.3e-15 Score=117.72 Aligned_cols=143 Identities=21% Similarity=0.279 Sum_probs=91.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCC-----------CCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc---c
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDP-----------SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT---L 77 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~ 77 (210)
-.++|+++|.+|+|||||+++|++..+... .++...+.....+..++..+.+.+|||||...... .
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999988876442 23334444444555567778999999999433211 0
Q ss_pred -----------------------hhhhhc--cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 78 -----------------------TSSYYR--GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 78 -----------------------~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
+...+. .+|+++++++.+... +......++..+ . ..+|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l---~--~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRL---S--KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHH---h--ccCCEEEEEECCCcC
Confidence 101222 478889988877521 111111222223 2 268999999999985
Q ss_pred CCCc--cCHHHHHHHHHHcCCeEEEecccC
Q 028315 133 SERA--VTREEGMILAQEHKCLFLECSAKN 160 (210)
Q Consensus 133 ~~~~--~~~~~~~~~~~~~~~~~~~~sa~~ 160 (210)
...+ ...+........+++.+|......
T Consensus 157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 157 TPEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 5322 233445566677888888876643
No 250
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=1.2e-15 Score=121.42 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=119.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC--------------CCCceeeEEEEEE----EEE-CCeEEEEEEEeCCCC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD--------------PSPTIGVDFKIKL----LTV-GGKRLKLTIWDTAGQ 71 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~----~~~-~~~~~~~~l~Dt~G~ 71 (210)
.+.-|..++-+-..|||||..|++.....- .....|++..... +.. ++..+.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 345578999999999999999996532111 1122233333332 222 567899999999999
Q ss_pred cccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC
Q 028315 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC 151 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 151 (210)
-.|.-.....+..|.++++|+|++.+...+.+...|+. +. .+.-++.|+||+||+.... +.-.++...-.|+
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlA-le-----~~LeIiPViNKIDLP~Adp--ervk~eIe~~iGi 158 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA-LE-----NNLEIIPVLNKIDLPAADP--ERVKQEIEDIIGI 158 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHH-HH-----cCcEEEEeeecccCCCCCH--HHHHHHHHHHhCC
Confidence 99998888999999999999999999888888844444 43 5778899999999965421 2223344555566
Q ss_pred e---EEEecccCCcCHHHHHHHHHHHHHccc
Q 028315 152 L---FLECSAKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 152 ~---~~~~sa~~~~~i~~l~~~i~~~~~~~~ 179 (210)
+ .+.+||++|.||+++++.|++.+..-.
T Consensus 159 d~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 159 DASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred CcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 4 899999999999999999999887544
No 251
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.68 E-value=1.6e-15 Score=118.92 Aligned_cols=165 Identities=19% Similarity=0.213 Sum_probs=100.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCC-C------CCceeeEEEEEE---------------EEECC-eEEEEEEEeCCCC-
Q 028315 16 ILLIGDSGVGKSSILLSLISNSVHD-P------SPTIGVDFKIKL---------------LTVGG-KRLKLTIWDTAGQ- 71 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~~~~-~------~~~~~~~~~~~~---------------~~~~~-~~~~~~l~Dt~G~- 71 (210)
|+++|.|+||||||++++++..... . .|..+..+.... ...++ ..+.+++|||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999998876432 1 222222221110 00122 3478999999996
Q ss_pred ---cccccchhh---hhccccEEEEEEeCCC---------------Hh-hHHHHHH---HH-------------------
Q 028315 72 ---ERFGTLTSS---YYRGAHGIILVYDVTR---------------RE-TFTNLSS---VW------------------- 107 (210)
Q Consensus 72 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~~-~~~~~~~---~~------------------- 107 (210)
+.+..+... .++++|++++|+|+.. |. .++.+.. .|
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444444 4899999999999973 11 1111111 11
Q ss_pred ----------------------HHHHhhhc--------------------cCCCCcEEEEEeCCCCCCCCccCHHHHHHH
Q 028315 108 ----------------------AKEVELYS--------------------TNQDCVKILVGNKVDRDSERAVTREEGMIL 145 (210)
Q Consensus 108 ----------------------~~~~~~~~--------------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 145 (210)
...+.... ....+|+++++||.|+...... ...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~----~~~l 236 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN----ISKL 236 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH----HHHH
Confidence 00000000 0224699999999997533221 1122
Q ss_pred HHHc-CCeEEEecccCCcCHHHHHH-HHHHHHHccchhhhc
Q 028315 146 AQEH-KCLFLECSAKNTEDVKQCFK-DLLYKILEVPSLLEQ 184 (210)
Q Consensus 146 ~~~~-~~~~~~~sa~~~~~i~~l~~-~i~~~~~~~~~~~~~ 184 (210)
.... ...++.+||+.+.+++++.+ .+.+.+.+.+.....
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~ 277 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEIT 277 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceec
Confidence 2223 45799999999999999998 699998776654433
No 252
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.68 E-value=3.8e-16 Score=133.55 Aligned_cols=152 Identities=16% Similarity=0.098 Sum_probs=96.6
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCC--------------------------------CceeeEEEEEEEEEC
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHDPS--------------------------------PTIGVDFKIKLLTVG 57 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~ 57 (210)
....+||+++|++++|||||+++|+........ ...+.+.......+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 345689999999999999999999864322110 011222333333444
Q ss_pred CeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc
Q 028315 58 GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV 137 (210)
Q Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 137 (210)
..+.++.|+||||++.|.......+..+|++++|+|+..+..-+... .+ ..+.. ....+++|++||+|+......
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~-~~~~~---~~~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HS-FIASL---LGIRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HH-HHHHH---hCCCeEEEEEEecccccchhH
Confidence 45567889999999888666666788999999999998754322211 11 11221 123578899999998642111
Q ss_pred CH----HHHHHHHHHcC---CeEEEecccCCcCHHH
Q 028315 138 TR----EEGMILAQEHK---CLFLECSAKNTEDVKQ 166 (210)
Q Consensus 138 ~~----~~~~~~~~~~~---~~~~~~sa~~~~~i~~ 166 (210)
.. .+...+....+ ++++.+||++|.|+.+
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 11 12222333444 3599999999999874
No 253
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.68 E-value=1.1e-15 Score=112.75 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=97.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCC-CceeeEE--EEEEEEECCeEEEEEEEeCCCCccccc-------c----hh
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPS-PTIGVDF--KIKLLTVGGKRLKLTIWDTAGQERFGT-------L----TS 79 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~----~~ 79 (210)
++|+++|.+|+|||||+|.+++....... ...+.+. ......+. +..+.++||||...... . +.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--CeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987654422 1112222 22222333 45788899999544321 1 11
Q ss_pred hhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCCccC------HHHHHHHHHHcCCe
Q 028315 80 SYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSERAVT------REEGMILAQEHKCL 152 (210)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~ 152 (210)
......|++++|+++.+ .+-.. . ..+..+..... ..-.++++++|+.|......+. ....+.+....+-.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~-~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r 155 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-E-QAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR 155 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-H-HHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe
Confidence 12357899999999886 22221 1 23333333221 1235789999999965432211 13344555555666
Q ss_pred EEEec-----ccCCcCHHHHHHHHHHHHHccc
Q 028315 153 FLECS-----AKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 153 ~~~~s-----a~~~~~i~~l~~~i~~~~~~~~ 179 (210)
|+..+ +..+.++.+|++.|-+.+.++.
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 65555 4567899999999988888743
No 254
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2e-16 Score=126.26 Aligned_cols=170 Identities=22% Similarity=0.185 Sum_probs=118.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc-c--------cchhhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF-G--------TLTSSY 81 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~--------~~~~~~ 81 (210)
+..++|+++|+||+|||||+|.|.+.....++|.+|+|.......++-.++.+.+.||+|..+. . ......
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 4568999999999999999999999999999999999999999999888899999999996552 1 122334
Q ss_pred hccccEEEEEEeCCCHhhHHHHH-HHHHHHHhhhc-----cCCCCcEEEEEeCCCCCCC-CccCHHHHHHHHHH-c-CCe
Q 028315 82 YRGAHGIILVYDVTRRETFTNLS-SVWAKEVELYS-----TNQDCVKILVGNKVDRDSE-RAVTREEGMILAQE-H-KCL 152 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~-~-~~~ 152 (210)
+..+|++++|+|+...+..+.+. ...+....... .....|++++.||.|+... .+............ . ..+
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~ 425 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP 425 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence 67899999999995433222222 12222221111 0134689999999998654 22322111111111 1 123
Q ss_pred -EEEecccCCcCHHHHHHHHHHHHHccch
Q 028315 153 -FLECSAKNTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 153 -~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 180 (210)
+.++|+++++|+++|.+.+.+.+...-.
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 5669999999999999999988765444
No 255
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.67 E-value=4.7e-16 Score=105.13 Aligned_cols=105 Identities=23% Similarity=0.229 Sum_probs=66.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEE--EEEEEECCeEEEEEEEeCCCCcccc---------cchhhhhc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFK--IKLLTVGGKRLKLTIWDTAGQERFG---------TLTSSYYR 83 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~~ 83 (210)
+|+++|.+|+|||||+|+|++..........+.+.. ...+.+.+.. +.++||||...-. ......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999998654332222222222 2333455554 4688999953321 11223347
Q ss_pred cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028315 84 GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (210)
.+|++++|+|+.++.. +... .+...++ .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~-~~~~~l~-----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDK-NILRELK-----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHH-HHHHHHH-----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHH-HHHHHHh-----cCCCEEEEEcC
Confidence 8999999999887422 1122 3333332 67899999998
No 256
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.67 E-value=1.9e-15 Score=125.91 Aligned_cols=116 Identities=17% Similarity=0.227 Sum_probs=82.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCC--CCC-------------------CCCceeeEEEEEEEEECCeEEEEEEEeCC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNS--VHD-------------------PSPTIGVDFKIKLLTVGGKRLKLTIWDTA 69 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 69 (210)
.+..+|+++|++++|||||+++|+... ... .....+.++......++..++.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 456799999999999999999986321 110 11122444555555666677899999999
Q ss_pred CCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
|+..|.......++.+|++|+|+|+.+...-+ .. .+..... ..+.|+++++||+|+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~-~l~~~~~----~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-TR-KLMEVTR----LRDTPIFTFMNKLDRD 145 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-HH-HHHHHHH----hcCCCEEEEEECcccc
Confidence 99988777777889999999999998753211 12 2223222 3578999999999974
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.67 E-value=9e-16 Score=125.57 Aligned_cols=163 Identities=15% Similarity=0.126 Sum_probs=103.2
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEEEE-----------------EEC------------
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIKLL-----------------TVG------------ 57 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~-----------------~~~------------ 57 (210)
.+...++|+++|+...|||||+..|.+..... .....+.+...... ...
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 34678999999999999999999997643211 11111111000000 000
Q ss_pred ----CeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCH-hhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 58 ----GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR-ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 58 ----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
.....+.|+|+|||+.|...+...+..+|++++|+|+.++ ...+... .+ ..+.. ..-.+++|++||+|+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~e-hl-~i~~~---lgi~~iIVvlNKiDlv 184 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSE-HL-AAVEI---MKLKHIIILQNKIDLV 184 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHH-HH-HHHHH---cCCCcEEEEEeccccc
Confidence 0024788999999999987777778899999999999974 2222222 22 22221 1234689999999986
Q ss_pred CCCccC--HHHHHHHHHH---cCCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 133 SERAVT--REEGMILAQE---HKCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 133 ~~~~~~--~~~~~~~~~~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
+..... .++...+... .+.+++.+||++|.|++.|++.|.+.+.
T Consensus 185 ~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 185 KEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 432221 1122222222 3568999999999999999998887554
No 258
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.67 E-value=3.6e-15 Score=113.65 Aligned_cols=164 Identities=20% Similarity=0.108 Sum_probs=107.6
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc-------ccchhhhhccc
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF-------GTLTSSYYRGA 85 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 85 (210)
-.+|+++|+|++|||||+++|++... +.....++|...........+..+|+.|+||.-.- ....-..+++|
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 47899999999999999999966654 33333344444444445556778999999983211 23344567999
Q ss_pred cEEEEEEeCCCHhh-HHHHHH----------------------------------------HHHHHHhhhc---------
Q 028315 86 HGIILVYDVTRRET-FTNLSS----------------------------------------VWAKEVELYS--------- 115 (210)
Q Consensus 86 d~~i~v~d~~~~~~-~~~~~~----------------------------------------~~~~~~~~~~--------- 115 (210)
|.+++|+|+..... .+.+.. ..+..+..+.
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 99999999996544 222221 1111111110
Q ss_pred --------------cCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHHHHHHccchh
Q 028315 116 --------------TNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPSL 181 (210)
Q Consensus 116 --------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~ 181 (210)
...-+|.++|+||.|+.. .++...+.+.. .++.+||+.+.|++++.+.|.+.+--.+-.
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~liRVY 294 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGLIRVY 294 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCeEEEE
Confidence 001248899999999854 23344444433 799999999999999999999987665554
Q ss_pred hhc
Q 028315 182 LEQ 184 (210)
Q Consensus 182 ~~~ 184 (210)
.+.
T Consensus 295 tK~ 297 (365)
T COG1163 295 TKP 297 (365)
T ss_pred ecC
Confidence 443
No 259
>PRK12739 elongation factor G; Reviewed
Probab=99.66 E-value=2.8e-15 Score=129.32 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=82.7
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-----CC------------CceeeEEEEEEEEECCeEEEEEEEeCCCCc
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-----PS------------PTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (210)
.++..||+++|++++|||||+++|+...-.. .. ...+.+.......+...+.++.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3567899999999999999999997531100 00 122333333333343356789999999998
Q ss_pred ccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
.|...+...++.+|++++|+|+.++...+... .|.. +. ..++|.++++||+|+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~-~~----~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQ-AD----KYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHH-HH----HcCCCEEEEEECCCCCC
Confidence 88778888899999999999998875433322 2322 22 35689999999999863
No 260
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=7.1e-16 Score=115.23 Aligned_cols=163 Identities=21% Similarity=0.285 Sum_probs=107.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCce-eeEEEEEE-EEECCeEEEEEEEeCCCCcc-------cccchhhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTI-GVDFKIKL-LTVGGKRLKLTIWDTAGQER-------FGTLTSSY 81 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~ 81 (210)
..+++|+++|.+|+|||||+|+++.+...+..... +.+..... ..+++ -.+.|||+||.++ ++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 35799999999999999999999977666533221 22122111 12233 4689999999544 45566777
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC--------ccCHH-------HHHHHH
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER--------AVTRE-------EGMILA 146 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------~~~~~-------~~~~~~ 146 (210)
+...|.+++++++.++.---... .|+..+.. . .+.++++++|..|...+- .-++. .+..+.
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~-f~~dVi~~-~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~ 190 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDED-FLRDVIIL-G--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG 190 (296)
T ss_pred hhhccEEEEeccCCCccccCCHH-HHHHHHHh-c--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 88999999999999985333332 44444432 2 358999999999975431 11111 111111
Q ss_pred HHc--CCeEEEecccCCcCHHHHHHHHHHHHHccc
Q 028315 147 QEH--KCLFLECSAKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 147 ~~~--~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 179 (210)
+.. --|++..+...+.|++.+...+++.+....
T Consensus 191 ~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 191 RLFQEVKPVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred HHHhhcCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence 111 136888889999999999999998877443
No 261
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.64 E-value=6.4e-16 Score=110.83 Aligned_cols=118 Identities=21% Similarity=0.320 Sum_probs=75.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEeCCCCcccccchhh---hhccccEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTV-GGKRLKLTIWDTAGQERFGTLTSS---YYRGAHGII 89 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~---~~~~~d~~i 89 (210)
-.|+++|+.|+|||+|+.+|..+.............. ..+ ......+.++|+|||++.+..... +...+.++|
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~---~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA---YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE---CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce---EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 4689999999999999999999866552222222221 112 223446788899999988764444 478899999
Q ss_pred EEEeCCC-HhhHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCC
Q 028315 90 LVYDVTR-RETFTNLSSVWAKEVELYS-TNQDCVKILVGNKVDRDSE 134 (210)
Q Consensus 90 ~v~d~~~-~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~ 134 (210)
+|+|.+. +..+.++.+++...+.... .....|++|+.||.|+...
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 9999984 4556777766666664443 2567899999999998654
No 262
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.64 E-value=6.1e-15 Score=127.29 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=85.5
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-----CC------------CceeeEEEEEEEEECCeEEEEEEEeCCCCc
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-----PS------------PTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (210)
.++--||+++|++++|||||+++|+...-.. .. ...+++.......+...+.++.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 3456699999999999999999997422111 11 123444444444444456789999999999
Q ss_pred ccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028315 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE 134 (210)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 134 (210)
.+...+...++.+|++++|+|+.+....+... .|.. +. ..++|+++++||+|+...
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~-~~----~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQ-AN----RYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHH-HH----HcCCCEEEEEECCCCCCC
Confidence 88888888899999999999999875554333 3332 22 356899999999998753
No 263
>PRK00007 elongation factor G; Reviewed
Probab=99.63 E-value=1.4e-14 Score=124.92 Aligned_cols=117 Identities=19% Similarity=0.206 Sum_probs=82.8
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCC--C---CC------------CceeeEEEEEEEEECCeEEEEEEEeCCCCc
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVH--D---PS------------PTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~---~~------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (210)
.++..||+++|++++|||||+++|+...-. . .. ...+.+.......+...+..+.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 456779999999999999999999742110 0 10 123344444334444446789999999998
Q ss_pred ccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
.|.......++.+|++++|+|+......+... .|.... ..+.|.++++||+|+.
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~-----~~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQAD-----KYKVPRIAFVNKMDRT 140 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHH-----HcCCCEEEEEECCCCC
Confidence 88777777889999999999998775544433 333322 3567899999999985
No 264
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.62 E-value=1.2e-15 Score=122.03 Aligned_cols=190 Identities=16% Similarity=0.118 Sum_probs=131.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc----cchh-----hh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG----TLTS-----SY 81 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~~~-----~~ 81 (210)
++.-.++++|.|++|||||++.+..... +..|..+++......+++..-.+++++||||.-..- .... ..
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 4556779999999999999998866554 444555555555555667777789999999943221 1111 11
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHH---HHHcCCeEEEecc
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMIL---AQEHKCLFLECSA 158 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~sa 158 (210)
.+--.+|+|+.|++....+.-.. +..-.........+.|+|+|+||+|+.+.+.++.+....+ ...-+++++++|+
T Consensus 245 AHLraaVLYfmDLSe~CGySva~-QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~ 323 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAA-QVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC 323 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHH-HHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence 22236899999999865432222 2211111222236889999999999988877776554333 3334588999999
Q ss_pred cCCcCHHHHHHHHHHHHHccchhhhcccccccccccchhhhhhh
Q 028315 159 KNTEDVKQCFKDLLYKILEVPSLLEQGSAVVKNQILKQKEVQES 202 (210)
Q Consensus 159 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (210)
.+..|+.++....++.++..+-..........+..++......+
T Consensus 324 ~~eegVm~Vrt~ACe~LLa~RVE~Klks~~~~n~vlnr~hvA~p 367 (620)
T KOG1490|consen 324 VQEEGVMDVRTTACEALLAARVEQKLKSESRVNNVLNRIHLAEP 367 (620)
T ss_pred cchhceeeHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC
Confidence 99999999999999999999998888877777766665554443
No 265
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.6e-14 Score=115.55 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=105.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEE--EEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKI--KLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
++--|.++|+..-|||||+..|......-. ..-|++... ..+..+ .+-+++|.|||||..|..++..-..-+|+++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~-E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAG-EAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehh-hcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 556688999999999999999976654331 111222222 223334 3468899999999999999988888999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH-------HcC--CeEEEecccC
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ-------EHK--CLFLECSAKN 160 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-------~~~--~~~~~~sa~~ 160 (210)
+|+.+.|.---+.+. . +. +....++|++|.+||+|.+.. +++....-.. .+| +.++++||++
T Consensus 230 LVVAadDGVmpQT~E-a----Ik-hAk~A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 230 LVVAADDGVMPQTLE-A----IK-HAKSANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred EEEEccCCccHhHHH-H----HH-HHHhcCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 999999864333222 1 11 112578999999999997533 3333332222 232 3589999999
Q ss_pred CcCHHHHHHHHHHH
Q 028315 161 TEDVKQCFKDLLYK 174 (210)
Q Consensus 161 ~~~i~~l~~~i~~~ 174 (210)
|.|++.|-+.++-.
T Consensus 301 g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 301 GENLDLLEEAILLL 314 (683)
T ss_pred CCChHHHHHHHHHH
Confidence 99999988776654
No 266
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.61 E-value=3.5e-14 Score=114.49 Aligned_cols=168 Identities=18% Similarity=0.180 Sum_probs=103.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEE---------------------EC-CeEEEEEEEeCCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLT---------------------VG-GKRLKLTIWDTAG 70 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~---------------------~~-~~~~~~~l~Dt~G 70 (210)
++|+++|.|+||||||+++|++..... .++..+.+....... .+ ...+.+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999998876543 222221111111111 11 2236789999999
Q ss_pred Cc----ccccchhhh---hccccEEEEEEeCCC---------------Hh-hHHHHHH------------H---------
Q 028315 71 QE----RFGTLTSSY---YRGAHGIILVYDVTR---------------RE-TFTNLSS------------V--------- 106 (210)
Q Consensus 71 ~~----~~~~~~~~~---~~~~d~~i~v~d~~~---------------~~-~~~~~~~------------~--------- 106 (210)
.. ....+...+ ++++|++++|+|+.. +. .++.+.. .
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~ 161 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ 161 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 42 223344444 789999999999971 10 0110000 0
Q ss_pred -----------------------HHHHHhhhc--------------------cCCCCcEEEEEeCCCCCCCCccCHHHHH
Q 028315 107 -----------------------WAKEVELYS--------------------TNQDCVKILVGNKVDRDSERAVTREEGM 143 (210)
Q Consensus 107 -----------------------~~~~~~~~~--------------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 143 (210)
+...+.... -...+|+++|+||.|+..... ...
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~----~l~ 237 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEE----NIE 237 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchH----HHH
Confidence 111111000 013479999999999743221 122
Q ss_pred HHHHHcCCeEEEecccCCcCHHH-HHHHHHHHHHccchhhhcc
Q 028315 144 ILAQEHKCLFLECSAKNTEDVKQ-CFKDLLYKILEVPSLLEQG 185 (210)
Q Consensus 144 ~~~~~~~~~~~~~sa~~~~~i~~-l~~~i~~~~~~~~~~~~~~ 185 (210)
.+....+..++.+||+.+.++++ +++.+.+.+...+..++.+
T Consensus 238 ~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d 280 (396)
T PRK09602 238 RLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILG 280 (396)
T ss_pred HHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccc
Confidence 22222345699999999999999 8899999988888777665
No 267
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1e-14 Score=114.61 Aligned_cols=152 Identities=18% Similarity=0.145 Sum_probs=103.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC------------------------------CCCceeeEEEEEEEEECCeE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD------------------------------PSPTIGVDFKIKLLTVGGKR 60 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 60 (210)
-..++++|+|+..+|||||+-+|+...-.. .....|.+.......+....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 457999999999999999999986432111 11234667777777777778
Q ss_pred EEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHh---hHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc
Q 028315 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRE---TFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV 137 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 137 (210)
+.+.++|+|||..|...+..-+..||++|+|+|+.+.+ .|.-..+.....+-... ..-..++|++||+|+.+ .
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t-lGi~~lIVavNKMD~v~---w 160 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART-LGIKQLIVAVNKMDLVS---W 160 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh-cCCceEEEEEEcccccc---c
Confidence 89999999999999888888889999999999999873 11000000111111111 12346789999999864 2
Q ss_pred CHHH-------HHHHHHHcC-----CeEEEecccCCcCHHH
Q 028315 138 TREE-------GMILAQEHK-----CLFLECSAKNTEDVKQ 166 (210)
Q Consensus 138 ~~~~-------~~~~~~~~~-----~~~~~~sa~~~~~i~~ 166 (210)
+.+. ...+.+..| ++++.+|+..|.|+.+
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 2222 222333333 4699999999999876
No 268
>PRK12740 elongation factor G; Reviewed
Probab=99.58 E-value=2e-14 Score=123.97 Aligned_cols=108 Identities=22% Similarity=0.286 Sum_probs=75.6
Q ss_pred EcCCCCcHHHHHHHHhhCCCCC-----C------------CCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhh
Q 028315 19 IGDSGVGKSSILLSLISNSVHD-----P------------SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSY 81 (210)
Q Consensus 19 ~G~~~~GKSsli~~l~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 81 (210)
+|++++|||||+++|+...-.. . ....+.+.......+...++.+.+|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 5999999999999995432110 0 0012233333333344456789999999998887778888
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
++.+|++++|+|++......... .|... . ..+.|+++|+||+|+.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~-~~~~~-~----~~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTET-VWRQA-E----KYGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHH-HHHHH-H----HcCCCEEEEEECCCCC
Confidence 99999999999999876555433 33322 2 2578999999999975
No 269
>PRK09866 hypothetical protein; Provisional
Probab=99.57 E-value=1.6e-13 Score=114.03 Aligned_cols=109 Identities=15% Similarity=0.121 Sum_probs=72.4
Q ss_pred EEEEEEeCCCCccc-----ccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC
Q 028315 61 LKLTIWDTAGQERF-----GTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER 135 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 135 (210)
.++.|+||||.... ...+...+..+|++++|+|+....+..+. .+...+... ....|+++|+||+|+.+..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~--~K~~PVILVVNKIDl~dre 305 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAV--GQSVPLYVLVNKFDQQDRN 305 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhc--CCCCCEEEEEEcccCCCcc
Confidence 47889999996432 22344568999999999999875433322 233434321 1235999999999986433
Q ss_pred ccCHHHHHHHHH----Hc---CCeEEEecccCCcCHHHHHHHHHH
Q 028315 136 AVTREEGMILAQ----EH---KCLFLECSAKNTEDVKQCFKDLLY 173 (210)
Q Consensus 136 ~~~~~~~~~~~~----~~---~~~~~~~sa~~~~~i~~l~~~i~~ 173 (210)
....+....+.. .. ...+|.+||+.|.|++++++.|.+
T Consensus 306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 323444444322 11 235999999999999999988876
No 270
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.57 E-value=1.2e-14 Score=95.70 Aligned_cols=136 Identities=23% Similarity=0.183 Sum_probs=94.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCc----ccccchhhhhccccEEEE
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE----RFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~~~d~~i~ 90 (210)
|++++|..|+|||||.+.+.+.. .-+..|...++. .. -.+||||.- .+..-......++|++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~-~lykKTQAve~~-------d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGND-TLYKKTQAVEFN-------DK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcch-hhhcccceeecc-------Cc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 78999999999999999995543 233344333332 11 135999942 222223344578999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEecccCCcCHHHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC-LFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~l~~ 169 (210)
|-.++++.+ .+-+.+.. ....|+|-|++|.|+.... +.+....+....|+ ++|++|+.++.|++++++
T Consensus 71 v~~and~~s------~f~p~f~~---~~~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 71 VHAANDPES------RFPPGFLD---IGVKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred eecccCccc------cCCccccc---ccccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence 999999865 33333322 2345689999999997533 34456667777777 499999999999999998
Q ss_pred HHHH
Q 028315 170 DLLY 173 (210)
Q Consensus 170 ~i~~ 173 (210)
.|..
T Consensus 140 ~L~~ 143 (148)
T COG4917 140 YLAS 143 (148)
T ss_pred HHHh
Confidence 7654
No 271
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.54 E-value=4.9e-14 Score=105.08 Aligned_cols=166 Identities=19% Similarity=0.190 Sum_probs=95.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCC---CceeeEEEEEEEEECCeEEEEEEEeCCCCccccc----chh-------
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPS---PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT----LTS------- 79 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~------- 79 (210)
+||+++|.+|+||||++|.+++....... .............+++ ..+.++||||...... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999988764421 1222233333335555 4577889999422211 111
Q ss_pred hhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhh-hccCCCCcEEEEEeCCCCCCCCccC-------HHHHHHHHHHcCC
Q 028315 80 SYYRGAHGIILVYDVTRRETFTNLSSVWAKEVEL-YSTNQDCVKILVGNKVDRDSERAVT-------REEGMILAQEHKC 151 (210)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~ 151 (210)
......|++++|+.+. +-+-... .....+.. +....-..++||.|..|......+. ......+....+-
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~--~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~ 155 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDR--EVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG 155 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHH--HHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCCeEEEEEEecC-cchHHHH--HHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC
Confidence 1235689999999988 3222221 22222222 2212234678888988865544321 1123455666777
Q ss_pred eEEEeccc------CCcCHHHHHHHHHHHHHccchhhhc
Q 028315 152 LFLECSAK------NTEDVKQCFKDLLYKILEVPSLLEQ 184 (210)
Q Consensus 152 ~~~~~sa~------~~~~i~~l~~~i~~~~~~~~~~~~~ 184 (210)
.|+..+.+ ....+.+|++.|-+.+.++...+-.
T Consensus 156 R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~ 194 (212)
T PF04548_consen 156 RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYS 194 (212)
T ss_dssp CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B
T ss_pred EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 78887776 4467889999988888877754433
No 272
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.54 E-value=4.2e-14 Score=122.47 Aligned_cols=117 Identities=20% Similarity=0.238 Sum_probs=82.5
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCC---------------CCC----CCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNS---------------VHD----PSPTIGVDFKIKLLTVGGKRLKLTIWDTAG 70 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~---------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 70 (210)
.++..||+++|+.++|||||+++|+... +.. ...|.........+.+++.++.+.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 3566899999999999999999997531 111 111222222222334566788999999999
Q ss_pred CcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 71 QERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
+..|.......++.+|++++|+|+.+....+... .|.... ..+.|.++++||+|..
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~-~~~~~~-----~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTET-VLRQAL-----KENVKPVLFINKVDRL 151 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHH-HHHHHH-----HcCCCEEEEEEChhcc
Confidence 9999888888899999999999998754333222 333222 2456888999999985
No 273
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.53 E-value=2.3e-13 Score=105.09 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=73.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccc-------hhhhh-
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTL-------TSSYY- 82 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~- 82 (210)
.+.++|+++|.+|+||||++|++++............+...........+..+.+|||||....... ...++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999998775443222222222111122223567899999996544211 11111
Q ss_pred -ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCCCccC
Q 028315 83 -RGAHGIILVYDVTRRETFTNLSSVWAKEVELYS-TNQDCVKILVGNKVDRDSERAVT 138 (210)
Q Consensus 83 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~ 138 (210)
...|++++|..++... +..........+.... ..--.+.+|++|+.|..++...+
T Consensus 116 ~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred cCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 2589999996654321 2211112223332221 12234789999999976544343
No 274
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.52 E-value=1.5e-13 Score=102.70 Aligned_cols=181 Identities=19% Similarity=0.189 Sum_probs=106.2
Q ss_pred CCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeE-------------EEEEE--------------------
Q 028315 7 NNSYDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVD-------------FKIKL-------------------- 53 (210)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-------------~~~~~-------------------- 53 (210)
+..+.++..|+++|..|+|||||++||.........|.--.+ .....
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 345567889999999999999999998543222211100000 00000
Q ss_pred ----------------EEECCeEEEEEEEeCCCC-ccc-----ccchhhhhc--cccEEEEEEeCCC---HhhHHHHHHH
Q 028315 54 ----------------LTVGGKRLKLTIWDTAGQ-ERF-----GTLTSSYYR--GAHGIILVYDVTR---RETFTNLSSV 106 (210)
Q Consensus 54 ----------------~~~~~~~~~~~l~Dt~G~-~~~-----~~~~~~~~~--~~d~~i~v~d~~~---~~~~~~~~~~ 106 (210)
+.-......+.++||||+ +.| .......+. ..-+++||+|... +.+|=.-.-|
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 000122356889999995 333 223323333 3457778888654 3333221112
Q ss_pred HHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHH--------------------------HHH-HcCCeEEEeccc
Q 028315 107 WAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMI--------------------------LAQ-EHKCLFLECSAK 159 (210)
Q Consensus 107 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------------------~~~-~~~~~~~~~sa~ 159 (210)
-..++. +.+.|.+++.||.|+.+.. +..+.... +.. ..++..+-+|+.
T Consensus 173 AcSily----ktklp~ivvfNK~Dv~d~~-fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~ 247 (366)
T KOG1532|consen 173 ACSILY----KTKLPFIVVFNKTDVSDSE-FALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSV 247 (366)
T ss_pred HHHHHH----hccCCeEEEEecccccccH-HHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecc
Confidence 222332 5789999999999987642 11111110 011 113568999999
Q ss_pred CCcCHHHHHHHHHHHHHccchhhhccccccccc
Q 028315 160 NTEDVKQCFKDLLYKILEVPSLLEQGSAVVKNQ 192 (210)
Q Consensus 160 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 192 (210)
+|.|.+++|..+-+.+-+....+....+..+..
T Consensus 248 tG~G~ddf~~av~~~vdEy~~~ykp~~Ek~k~~ 280 (366)
T KOG1532|consen 248 TGEGFDDFFTAVDESVDEYEEEYKPEYEKKKAE 280 (366)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999998888777776665554443
No 275
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.51 E-value=2.8e-13 Score=102.93 Aligned_cols=126 Identities=19% Similarity=0.205 Sum_probs=73.6
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc---c-------h
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT---L-------T 78 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~-------~ 78 (210)
....+++|+++|.+|+|||||+|.+++............+.....+.....+..+.+|||||...... . .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 34578999999999999999999999887654322222222222222223346789999999654411 0 1
Q ss_pred hhhhc--cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCCC
Q 028315 79 SSYYR--GAHGIILVYDVTRRETFTNLSSVWAKEVELYS-TNQDCVKILVGNKVDRDSER 135 (210)
Q Consensus 79 ~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~ 135 (210)
..++. ..|++++|..++... +..........+.... ..--.++++|.||+|...+.
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 22332 578888887665431 1111112233332221 11124689999999986443
No 276
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.51 E-value=4.5e-13 Score=106.67 Aligned_cols=160 Identities=23% Similarity=0.271 Sum_probs=114.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC--CCC-------------CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccch
Q 028315 14 FKILLIGDSGVGKSSILLSLISNS--VHD-------------PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLT 78 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 78 (210)
-||+|+-+..-|||||+..|+... |.+ .....|++.-.+...+...+++++++|||||..|....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 489999999999999999997542 222 11334666666666667777899999999999999999
Q ss_pred hhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc-CHHHHHHHHHH-------cC
Q 028315 79 SSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV-TREEGMILAQE-------HK 150 (210)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~-------~~ 150 (210)
+..+.-+|++++++|+.+..--+ -+......+ ..+.+.|||+||+|.+..+.. -.++...+... +.
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl-----~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKAL-----ALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCCc-hhhhHHHHH-----HcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 99999999999999999853211 111222223 356677899999998765432 12344455433 45
Q ss_pred CeEEEecccCC----------cCHHHHHHHHHHHHHccc
Q 028315 151 CLFLECSAKNT----------EDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 151 ~~~~~~sa~~~----------~~i~~l~~~i~~~~~~~~ 179 (210)
+|++..|+..| .++.-||+.|++.+..-.
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 78999999876 367778888888776544
No 277
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.49 E-value=4e-13 Score=103.60 Aligned_cols=150 Identities=16% Similarity=0.129 Sum_probs=106.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCC--------------------------------CCceeeEEEEEEEEECCe
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDP--------------------------------SPTIGVDFKIKLLTVGGK 59 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~ 59 (210)
..+|++..|...-||||||-||+...-..+ ....|++..+....+...
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 358999999999999999999965321110 123466677666666777
Q ss_pred EEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCH
Q 028315 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTR 139 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 139 (210)
...|++-|||||+.|..++-.-...||.+|+++|+...-.-+.-+.-++..+. .=..+++.+||+||.+=.+...
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL-----GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh-----CCcEEEEEEeeecccccCHHHH
Confidence 78999999999999988888888899999999999766433332222222221 2346789999999975433222
Q ss_pred ----HHHHHHHHHcCC---eEEEecccCCcCHHH
Q 028315 140 ----EEGMILAQEHKC---LFLECSAKNTEDVKQ 166 (210)
Q Consensus 140 ----~~~~~~~~~~~~---~~~~~sa~~~~~i~~ 166 (210)
++...|+..+++ .++.+||..|.|+-.
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 234456667765 499999999998754
No 278
>PRK13768 GTPase; Provisional
Probab=99.49 E-value=3.5e-13 Score=102.97 Aligned_cols=115 Identities=17% Similarity=0.114 Sum_probs=71.5
Q ss_pred EEEEEeCCCCccc---ccchhhhhcc-----ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 62 KLTIWDTAGQERF---GTLTSSYYRG-----AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 62 ~~~l~Dt~G~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
.+.+||+||..+. ...+..+++. ++++++|+|+............+...+.... ..+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 6899999997553 3344333332 8999999999765433332212211111111 25789999999999865
Q ss_pred CCccCHHH--HH------------------------HHHHHcC--CeEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 134 ERAVTREE--GM------------------------ILAQEHK--CLFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 134 ~~~~~~~~--~~------------------------~~~~~~~--~~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
..+..... .. ......+ .+++.+|++++.|+++++++|.+.+..
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 43321100 00 0111223 478999999999999999999887653
No 279
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.47 E-value=4.4e-12 Score=96.97 Aligned_cols=171 Identities=16% Similarity=0.189 Sum_probs=121.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCe--EEEEEEEeCCCCcccccchhhhhccc----
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGK--RLKLTIWDTAGQERFGTLTSSYYRGA---- 85 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~---- 85 (210)
.--+|+++|..++||||||.+|-+.. .+.+..+..+-...++-+.+ -.++.+|-+-|+.....+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 34689999999999999999996655 34455555555544443322 35788898888776666666655443
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhc--------------------------------------------------
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYS-------------------------------------------------- 115 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 115 (210)
-.+|++.|++++...-+..+.|...+..+.
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 478899999999665444446766554432
Q ss_pred ----------cCCCCcEEEEEeCCCCC----CCCccCH-------HHHHHHHHHcCCeEEEecccCCcCHHHHHHHHHHH
Q 028315 116 ----------TNQDCVKILVGNKVDRD----SERAVTR-------EEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 116 ----------~~~~~p~ivv~nK~Dl~----~~~~~~~-------~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~ 174 (210)
.+.++|++||.+|+|.. .+.+... ...+.|+..+|+.+|.+|++...|++-+...|..+
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 22356999999999973 2222222 23567788899999999999999999999999999
Q ss_pred HHccchhhhc
Q 028315 175 ILEVPSLLEQ 184 (210)
Q Consensus 175 ~~~~~~~~~~ 184 (210)
+..-+...+.
T Consensus 289 ~yG~~fttpA 298 (473)
T KOG3905|consen 289 SYGFPFTTPA 298 (473)
T ss_pred hcCcccCCcc
Confidence 8876665443
No 280
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=5.1e-13 Score=96.22 Aligned_cols=115 Identities=21% Similarity=0.267 Sum_probs=78.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhc---cccEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYR---GAHGIIL 90 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~d~~i~ 90 (210)
-.|+++|+.++|||+|+-+|..+.+....+.+....- .+.+... ...++|.|||.+.+.-...++. .+-++++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a--~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEA--TYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeecccee--eEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 4689999999999999999988865553333322222 2222222 3678899999988766666666 6899999
Q ss_pred EEeCCCH-hhHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCC
Q 028315 91 VYDVTRR-ETFTNLSSVWAKEVELY-STNQDCVKILVGNKVDRD 132 (210)
Q Consensus 91 v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~ 132 (210)
|+|...- ....++.+++...+... ......|++++.||.|+.
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 9998743 23455554555554333 235778999999999984
No 281
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.45 E-value=2.7e-12 Score=101.24 Aligned_cols=120 Identities=19% Similarity=0.164 Sum_probs=87.0
Q ss_pred CeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCH----------hhHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028315 58 GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR----------ETFTNLSSVWAKEVELYSTNQDCVKILVGN 127 (210)
Q Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 127 (210)
...+.+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....|...+.... ..+.|+++++|
T Consensus 158 ~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~-~~~~pill~~N 236 (317)
T cd00066 158 IKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW-FANTSIILFLN 236 (317)
T ss_pred ecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc-ccCCCEEEEcc
Confidence 3457889999999999999999999999999999999974 456555545555554322 36789999999
Q ss_pred CCCCCCC---------------C-ccCHHHHHHHHHH----------cCCeEEEecccCCcCHHHHHHHHHHHHHcc
Q 028315 128 KVDRDSE---------------R-AVTREEGMILAQE----------HKCLFLECSAKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 128 K~Dl~~~---------------~-~~~~~~~~~~~~~----------~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 178 (210)
|.|+-.+ . .-+.+.+..+... ..+.++.++|.+..+++.+|+.+.+.+...
T Consensus 237 K~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 237 KKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred ChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 9996210 0 1233333333221 123467899999999999999998887754
No 282
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.45 E-value=2.7e-12 Score=113.37 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=89.0
Q ss_pred CcHHHHHHHHhhCCCCC-----CCCceeeEEEEEEE--E----------ECCeEEEEEEEeCCCCcccccchhhhhcccc
Q 028315 24 VGKSSILLSLISNSVHD-----PSPTIGVDFKIKLL--T----------VGGKRLKLTIWDTAGQERFGTLTSSYYRGAH 86 (210)
Q Consensus 24 ~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~--~----------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (210)
++||||+.++.+..... .+..+|........ . .......+.||||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 35999999998776544 12222322221110 0 0000123899999999999888777788899
Q ss_pred EEEEEEeCCC---HhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCH------------HH-HHH------
Q 028315 87 GIILVYDVTR---RETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTR------------EE-GMI------ 144 (210)
Q Consensus 87 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~------------~~-~~~------ 144 (210)
++++|+|+++ +++++.+. .+. ..++|+++++||+|+.+...... +. ..+
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~-----~lk----~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~ 622 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN-----ILR----QYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLY 622 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH-----HHH----HcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999997 34433332 222 24679999999999864211100 00 001
Q ss_pred -----HHH------------Hc--CCeEEEecccCCcCHHHHHHHHHHH
Q 028315 145 -----LAQ------------EH--KCLFLECSAKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 145 -----~~~------------~~--~~~~~~~sa~~~~~i~~l~~~i~~~ 174 (210)
+.. .+ .++++.+||++|.|+++|+.+|...
T Consensus 623 ~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 623 ELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 110 11 3479999999999999999877643
No 283
>PTZ00416 elongation factor 2; Provisional
Probab=99.44 E-value=4e-13 Score=117.90 Aligned_cols=116 Identities=21% Similarity=0.256 Sum_probs=80.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCC---------------CCceeeEEEEE--EEEEC--------CeEEEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDP---------------SPTIGVDFKIK--LLTVG--------GKRLKLTI 65 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------------~~~~~~~~~~~--~~~~~--------~~~~~~~l 65 (210)
++..||+++|+.++|||||+++|+...-... ....+.+.... ..... ..+..+.|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4556999999999999999999976322110 01111122211 11111 22577999
Q ss_pred EeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 66 WDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 66 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
+||||+..|.......++.+|++|+|+|+.++...+... .|.... ..+.|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~-~~~~~~-----~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTET-VLRQAL-----QERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHH-HHHHHH-----HcCCCEEEEEEChhhh
Confidence 999999999888888899999999999999875444333 444333 2467999999999985
No 284
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.44 E-value=3.4e-13 Score=118.53 Aligned_cols=117 Identities=20% Similarity=0.236 Sum_probs=83.1
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC---C------------CCceeeEEEEE--EEEE--------------CC
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD---P------------SPTIGVDFKIK--LLTV--------------GG 58 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---~------------~~~~~~~~~~~--~~~~--------------~~ 58 (210)
.++..||+++|+.++|||||+.+|+...-.. . ....+.+.... .... ..
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 4567799999999999999999997543211 0 00111122211 1111 12
Q ss_pred eEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 59 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
.++.+.++|||||..|.......++.+|++|+|+|+..+...+... .|.... ..++|.++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~-----~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL-----GERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHH-----HCCCCEEEEEECCccc
Confidence 3678899999999999888888899999999999999876544444 454443 3578999999999986
No 285
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.44 E-value=2.6e-12 Score=111.66 Aligned_cols=117 Identities=22% Similarity=0.261 Sum_probs=80.3
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCC---------------CceeeEEEEE----EEEECCeEEEEEEEeCCC
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHDPS---------------PTIGVDFKIK----LLTVGGKRLKLTIWDTAG 70 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~---------------~~~~~~~~~~----~~~~~~~~~~~~l~Dt~G 70 (210)
.++.-||+++|+.++|||||+.+|+...-.... ...+.+.... .+...+.++.+.|+||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 356678999999999999999999753221100 0011111111 122344578899999999
Q ss_pred CcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 71 QERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
+..|.......++.+|++++|+|+......+... .|..... .+.|.++++||+|..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~-~~~~~~~-----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET-VLRQALR-----ERVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHH-HHHHHHH-----cCCCeEEEEECchhh
Confidence 9999888888899999999999998764433333 4443322 345779999999975
No 286
>PTZ00258 GTP-binding protein; Provisional
Probab=99.44 E-value=4.2e-12 Score=101.67 Aligned_cols=87 Identities=22% Similarity=0.151 Sum_probs=56.2
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeE--EEEEEEEECCe---------------EEEEEEEeCCC
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVD--FKIKLLTVGGK---------------RLKLTIWDTAG 70 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------~~~~~l~Dt~G 70 (210)
..+.+.++|+++|.|++|||||+|+|.+... ...+.++++ .....+.+.+. ..++.++||||
T Consensus 16 ~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG 94 (390)
T PTZ00258 16 GRPGNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG 94 (390)
T ss_pred ccCCCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence 3446778999999999999999999976654 333333333 23333333322 23588999999
Q ss_pred Ccccc----c---chhhhhccccEEEEEEeCC
Q 028315 71 QERFG----T---LTSSYYRGAHGIILVYDVT 95 (210)
Q Consensus 71 ~~~~~----~---~~~~~~~~~d~~i~v~d~~ 95 (210)
...-. . ..-..++.+|++++|+|..
T Consensus 95 Lv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 95 LVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 43211 1 1223467899999999984
No 287
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.43 E-value=8.7e-12 Score=102.19 Aligned_cols=168 Identities=15% Similarity=0.254 Sum_probs=116.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEEC--CeEEEEEEEeCCCCcccccchhhhhcc----c
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVG--GKRLKLTIWDTAGQERFGTLTSSYYRG----A 85 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~----~ 85 (210)
..-+|+|+|..++|||||+.+|.+.. ...++.+.+|....+.-+ ....++.+|-+.|...+..+.+..+.. -
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 45688999999999999999986543 344566666665554332 224688999998877776666655542 2
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhc--------------------------------------------------
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYS-------------------------------------------------- 115 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 115 (210)
-.+++|+|.+.|..+-.-...|...++...
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 478999999998665322224444332221
Q ss_pred -----------cCCCCcEEEEEeCCCCCC----CCccC-------HHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHHH
Q 028315 116 -----------TNQDCVKILVGNKVDRDS----ERAVT-------REEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLY 173 (210)
Q Consensus 116 -----------~~~~~p~ivv~nK~Dl~~----~~~~~-------~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~ 173 (210)
.+.++|++||++|+|... ..... .+-.+.++..+|+.+|.||++...+++.++..|..
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 011369999999999632 11111 12255677788999999999999999999999999
Q ss_pred HHHccchh
Q 028315 174 KILEVPSL 181 (210)
Q Consensus 174 ~~~~~~~~ 181 (210)
++...+..
T Consensus 262 ~l~~~~f~ 269 (472)
T PF05783_consen 262 RLYGFPFK 269 (472)
T ss_pred HhccCCCC
Confidence 98876654
No 288
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.43 E-value=8.7e-13 Score=100.30 Aligned_cols=96 Identities=24% Similarity=0.263 Sum_probs=77.1
Q ss_pred cccccchhhhhccccEEEEEEeCCCHh-hHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcC
Q 028315 72 ERFGTLTSSYYRGAHGIILVYDVTRRE-TFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHK 150 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 150 (210)
+++..+.+.+++++|++++|+|+.++. ++..+. .|+..+. ..+.|+++|+||+||.+.+.+..+....+ ...+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~-r~l~~~~----~~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g 97 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLD-RFLVVAE----AQNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIG 97 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHH-HHHHHHH----HCCCCEEEEEECcccCCCHHHHHHHHHHH-HHCC
Confidence 677788888999999999999999887 788877 6776554 26789999999999976554444444444 3478
Q ss_pred CeEEEecccCCcCHHHHHHHHHH
Q 028315 151 CLFLECSAKNTEDVKQCFKDLLY 173 (210)
Q Consensus 151 ~~~~~~sa~~~~~i~~l~~~i~~ 173 (210)
.+++++||++|.|++++|+.+.+
T Consensus 98 ~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 98 YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CeEEEEecCCchhHHHHHhhhcC
Confidence 89999999999999999987754
No 289
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.42 E-value=4.6e-12 Score=93.37 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=64.7
Q ss_pred EEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHH
Q 028315 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTRE 140 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 140 (210)
....++++.|......... . -+|.++.|+|+.+...... .+...+ ...-++++||+|+.+......+
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~---~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~ 158 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR---KGGPGI-------TRSDLLVINKIDLAPMVGADLG 158 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh---hhHhHh-------hhccEEEEEhhhccccccccHH
Confidence 4566778888432222221 1 2588999999987665321 111111 1223899999999753222233
Q ss_pred HHHHHHH--HcCCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 141 EGMILAQ--EHKCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 141 ~~~~~~~--~~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
......+ ..+.+++++||++|.|++++|+++.+.+.
T Consensus 159 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 159 VMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3333333 34678999999999999999999987654
No 290
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.41 E-value=8.9e-12 Score=99.07 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=85.2
Q ss_pred eEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCH----------hhHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028315 59 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR----------ETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128 (210)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (210)
.+..+.+||.+|+...+..|..++.+++++++|+|+++. ..+.+....|...+.... ..+.|+++++||
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~-~~~~piil~~NK 260 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW-FANTSIILFLNK 260 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc-ccCCcEEEEEec
Confidence 345788999999999999999999999999999999973 356666645555554332 467899999999
Q ss_pred CCCCCC---------------CccCHHHHHHHHHH-----------cCCeEEEecccCCcCHHHHHHHHHHHHHcc
Q 028315 129 VDRDSE---------------RAVTREEGMILAQE-----------HKCLFLECSAKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 129 ~Dl~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 178 (210)
.|+-.. ...+.+.+..+... ..+..+.++|.+..++..+|+.+...+...
T Consensus 261 ~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 261 IDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 997310 01122333332211 123467888999999999999988877754
No 291
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=7.5e-12 Score=96.51 Aligned_cols=161 Identities=20% Similarity=0.223 Sum_probs=98.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCC----CCC--CCCceeeEEEEEEE--EE-------CCeEEEEEEEeCCCCcccc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNS----VHD--PSPTIGVDFKIKLL--TV-------GGKRLKLTIWDTAGQERFG 75 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~----~~~--~~~~~~~~~~~~~~--~~-------~~~~~~~~l~Dt~G~~~~~ 75 (210)
+..+|++++|+..+|||||.+++..-. |.. .+.+.+.+.....- .+ .++..++.++|+|||...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 456999999999999999999996432 222 22233333332211 11 3445788999999997654
Q ss_pred cchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc--CHH-HHHHHHHHc---
Q 028315 76 TLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV--TRE-EGMILAQEH--- 149 (210)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~-~~~~~~~~~--- 149 (210)
...-.-..-.|..++|+|+.....-+...-..+..+ .-...+||+||+|..++... ..+ ......+.+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 444444455699999999998765555442222211 23345888899987654221 111 122222211
Q ss_pred ----CCeEEEecccCC----cCHHHHHHHHHHHHHc
Q 028315 150 ----KCLFLECSAKNT----EDVKQCFKDLLYKILE 177 (210)
Q Consensus 150 ----~~~~~~~sa~~~----~~i~~l~~~i~~~~~~ 177 (210)
+.|++++||.+| .++.++.+.+-+++.+
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 368999999999 6677766666555543
No 292
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.40 E-value=8.5e-12 Score=99.11 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=97.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhC----CCC-----------CCCCcee---eEEEEEE-------EE-ECCeEEEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISN----SVH-----------DPSPTIG---VDFKIKL-------LT-VGGKRLKLTIW 66 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~----~~~-----------~~~~~~~---~~~~~~~-------~~-~~~~~~~~~l~ 66 (210)
.+-|+++|+.++|||||+++|.+. ... -.+...| +|..... +. .++....+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 478999999999999999999887 333 1333344 2222221 11 24556788899
Q ss_pred eCCCCccc--------cc-----------c----------hhhhhc-cccEEEEEE-eCC----CHhhHHHHHHHHHHHH
Q 028315 67 DTAGQERF--------GT-----------L----------TSSYYR-GAHGIILVY-DVT----RRETFTNLSSVWAKEV 111 (210)
Q Consensus 67 Dt~G~~~~--------~~-----------~----------~~~~~~-~~d~~i~v~-d~~----~~~~~~~~~~~~~~~~ 111 (210)
||+|-..- .. . ....+. ++|+.++|. |.+ .++.+......+...+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 99992211 11 0 122334 899999998 764 1122444444666666
Q ss_pred hhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccC--CcCHHHHHHHHHHH
Q 028315 112 ELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKN--TEDVKQCFKDLLYK 174 (210)
Q Consensus 112 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~--~~~i~~l~~~i~~~ 174 (210)
. ..++|+++++|+.|...+. ..+....+...++++++.+|+.. ...|..++..++..
T Consensus 177 k----~~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~E 235 (492)
T TIGR02836 177 K----ELNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYE 235 (492)
T ss_pred H----hcCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhc
Confidence 5 4789999999999943221 34445566777888877777763 45566665555443
No 293
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.39 E-value=1e-11 Score=93.44 Aligned_cols=138 Identities=16% Similarity=0.186 Sum_probs=82.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
.....|+++|.+|+|||||++.+.+..... .....+. +. + ....+.++.++||||.- ......++.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~---i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-IT---V-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EE---E-EecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence 456789999999999999999997653222 2222221 11 1 11245678899999853 22223467899999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcE-EEEEeCCCCCCCCc-cC--HHHHH-HHHHH--cCCeEEEecccCCc
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK-ILVGNKVDRDSERA-VT--REEGM-ILAQE--HKCLFLECSAKNTE 162 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~-~~--~~~~~-~~~~~--~~~~~~~~sa~~~~ 162 (210)
+|+|++.+...... .+...+. ..+.|. ++|+||+|+.+... .. .++.+ .+... .+.+++.+||++..
T Consensus 109 lviDa~~~~~~~~~--~i~~~l~----~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 109 LLIDASFGFEMETF--EFLNILQ----VHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEecCcCCCHHHH--HHHHHHH----HcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 99999865433222 2333332 245674 45999999864321 11 11111 12221 24679999999873
No 294
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=6.3e-12 Score=107.21 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=93.5
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-----------------CCCceeeEEEEEEEEECCe-EEEEEEEeCCCC
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-----------------PSPTIGVDFKIKLLTVGGK-RLKLTIWDTAGQ 71 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~ 71 (210)
.++.-||+++|+.++|||||..+++...-.. .....|.+........... .++++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 5678899999999999999999986432111 1123466666666666556 489999999999
Q ss_pred cccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
-+|.......++-+|++++|+|+...-..+... .|+.... .++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEt-v~rqa~~-----~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTET-VWRQADK-----YGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHH-HHHHHhh-----cCCCeEEEEECccccc
Confidence 999999999999999999999999886666555 6766654 7889999999999754
No 295
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=5.4e-12 Score=103.02 Aligned_cols=173 Identities=21% Similarity=0.150 Sum_probs=110.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC------------------------------CCCceeeEEEEEEEEECCeEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD------------------------------PSPTIGVDFKIKLLTVGGKRL 61 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (210)
..++++++|+.++|||||+.+++...-.. .....|.+..+...+++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 68999999999999999999985321100 123446777777778888888
Q ss_pred EEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHh---hHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC
Q 028315 62 KLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRE---TFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT 138 (210)
Q Consensus 62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 138 (210)
.++|+|+|||..|...+..-...+|++++|+|++... .|+... +.++.........-..++|++||+|+..=.+-.
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~g-QtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~R 334 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGG-QTREHALLLRSLGISQLIVAINKMDLVSWSQDR 334 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCC-chHHHHHHHHHcCcceEEEEeecccccCccHHH
Confidence 9999999999999988888888999999999999642 111000 111111111112345678999999986421111
Q ss_pred HHH----HHHHH-HHcC-----CeEEEecccCCcCHHHHH-HHHHHHHHccchhhhcc
Q 028315 139 REE----GMILA-QEHK-----CLFLECSAKNTEDVKQCF-KDLLYKILEVPSLLEQG 185 (210)
Q Consensus 139 ~~~----~~~~~-~~~~-----~~~~~~sa~~~~~i~~l~-~~i~~~~~~~~~~~~~~ 185 (210)
.++ ...|. +..| +.++.||+..|.|+-..= ..-+..+++.+-.+...
T Consensus 335 F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~i 392 (603)
T KOG0458|consen 335 FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQI 392 (603)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHH
Confidence 111 12222 3334 359999999999976541 11344455555544443
No 296
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.36 E-value=6e-12 Score=85.65 Aligned_cols=113 Identities=31% Similarity=0.402 Sum_probs=78.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CC-CceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PS-PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
+||+++|..|+|||+|+.++....+.. +. ++.+ +........+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997776654 22 2222 222234456778999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 165 (210)
++..+..+++.+ |...+.... +.+.|.++++||.|+.....+..++. ..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~---~~~~i~~~~-k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK---NVPEVLVGN-KSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH---hHHHHHhcC-CCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999988654 555554332 46788999999999854333433222 235678889998874
No 297
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.36 E-value=1.3e-11 Score=97.10 Aligned_cols=104 Identities=16% Similarity=0.154 Sum_probs=66.8
Q ss_pred EEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCH
Q 028315 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTR 139 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 139 (210)
++.+.|+||+|...-... ....+|.++++.+...++..+.... ..+ ...-++|+||+|+........
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~-------E~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIM-------ELADLIVINKADGDNKTAARR 214 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhh-------hhhheEEeehhcccchhHHHH
Confidence 468899999997532222 4667999999987555555444331 111 122389999999865332111
Q ss_pred --HHHHHHHH-------HcCCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 140 --EEGMILAQ-------EHKCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 140 --~~~~~~~~-------~~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
.+...... .+..+++.+||+++.|++++++.|.+.+.
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11111111 13357999999999999999999998754
No 298
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=2.8e-12 Score=93.55 Aligned_cols=171 Identities=24% Similarity=0.378 Sum_probs=108.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECC-eEEEEEEEeCCCCcccc-----cchhhhhcccc
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGG-KRLKLTIWDTAGQERFG-----TLTSSYYRGAH 86 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----~~~~~~~~~~d 86 (210)
.-||+++|.+|+|||++-..++...........|.+......++.. ....+.+||++|++.+- ......+++.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 3589999999999999766665444333344444444443333322 23678999999998552 24456789999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCC--CccCHHHHHH----HHHHcCCeEEEeccc
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSE--RAVTREEGMI----LAQEHKCLFLECSAK 159 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~----~~~~~~~~~~~~sa~ 159 (210)
++++|||++..+-..++. ++...++.... .+...+++..+|+|+... ++...++... +....++.++.+|..
T Consensus 84 vli~vFDves~e~~~D~~-~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFH-YYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeeccchhhhhhHH-HHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 999999999887556665 66665555432 466778899999999643 2222222222 222334568888877
Q ss_pred CCcCHHHHHHHHHHHHHccchhhhcc
Q 028315 160 NTEDVKQCFKDLLYKILEVPSLLEQG 185 (210)
Q Consensus 160 ~~~~i~~l~~~i~~~~~~~~~~~~~~ 185 (210)
+.. +-..+..+...+..+...+++.
T Consensus 163 Det-l~KAWS~iv~~lipn~~~~e~~ 187 (295)
T KOG3886|consen 163 DET-LYKAWSSIVYNLIPNVSALESK 187 (295)
T ss_pred hHH-HHHHHHHHHHhhCCChHHHHHH
Confidence 543 3334666666666666655543
No 299
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.34 E-value=8.3e-12 Score=92.82 Aligned_cols=150 Identities=15% Similarity=0.114 Sum_probs=84.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCC--C----C------CC-----ceeeEEEEEEE----------------EECC
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVH--D----P------SP-----TIGVDFKIKLL----------------TVGG 58 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--~----~------~~-----~~~~~~~~~~~----------------~~~~ 58 (210)
...+|+++|+.|+|||||+++++..... . . .. ..+.......- ....
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 3678999999999999999998654110 0 0 00 00000000000 0001
Q ss_pred eEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC
Q 028315 59 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT 138 (210)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 138 (210)
....+.+++|.|.-... ..+....+..+.|+|+.+.+... . .... ....|.++++||+|+.......
T Consensus 101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~-~~~~-------~~~~a~iiv~NK~Dl~~~~~~~ 167 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--L-KYPG-------MFKEADLIVINKADLAEAVGFD 167 (207)
T ss_pred CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--h-hhHh-------HHhhCCEEEEEHHHccccchhh
Confidence 13466777887721111 11112345566788887654211 1 1111 1245779999999996543222
Q ss_pred HHHHHHHHHHc--CCeEEEecccCCcCHHHHHHHHHHH
Q 028315 139 REEGMILAQEH--KCLFLECSAKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 139 ~~~~~~~~~~~--~~~~~~~sa~~~~~i~~l~~~i~~~ 174 (210)
.++........ ..+++++||++|.|++++++++.+.
T Consensus 168 ~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 168 VEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 33333333333 4789999999999999999999774
No 300
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.34 E-value=7.2e-13 Score=100.10 Aligned_cols=112 Identities=16% Similarity=0.163 Sum_probs=56.6
Q ss_pred EEEEEeCCCCcccccchhhhh--------ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 62 KLTIWDTAGQERFGTLTSSYY--------RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 62 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
.+.++||||+.++-..+...- ...-++++++|+....+.......++..+.... ..+.|.+.|+||+|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~-~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML-RLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH-HHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh-hCCCCEEEeeeccCccc
Confidence 688999999877654444332 345688999998754332222212222222221 25789999999999975
Q ss_pred CC---ccC----------------HHHHHHHHH---HcC-C-eEEEecccCCcCHHHHHHHHHHH
Q 028315 134 ER---AVT----------------REEGMILAQ---EHK-C-LFLECSAKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 134 ~~---~~~----------------~~~~~~~~~---~~~-~-~~~~~sa~~~~~i~~l~~~i~~~ 174 (210)
.. ... ......++. .++ . .++.+|+.++.++.+++..+-+.
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 21 000 000111111 122 3 69999999999999988876554
No 301
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.32 E-value=1.2e-11 Score=98.13 Aligned_cols=161 Identities=20% Similarity=0.207 Sum_probs=84.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC--CCC--ceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhh-----h
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD--PSP--TIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSY-----Y 82 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~-----~ 82 (210)
.+++|+|+|.+|+|||||||.|.+-...+ ..+ ...++.....+... .-..+.+||+||...-......| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 47899999999999999999997643322 111 12222333333332 22358999999954333333333 4
Q ss_pred ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC-------CCCCccCHHHHHHHHH--------
Q 028315 83 RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR-------DSERAVTREEGMILAQ-------- 147 (210)
Q Consensus 83 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl-------~~~~~~~~~~~~~~~~-------- 147 (210)
...|.+|++.+-. |....-.+...+. ..++|+++|-||.|. ..++...+++..+..+
T Consensus 113 ~~yD~fiii~s~r----f~~ndv~La~~i~----~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 113 YRYDFFIIISSER----FTENDVQLAKEIQ----RMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp GG-SEEEEEESSS------HHHHHHHHHHH----HTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred cccCEEEEEeCCC----CchhhHHHHHHHH----HcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence 5689888877633 4333323333333 357899999999995 1233444433222211
Q ss_pred HcCC---eEEEecccCC--cCHHHHHHHHHHHHHccchh
Q 028315 148 EHKC---LFLECSAKNT--EDVKQCFKDLLYKILEVPSL 181 (210)
Q Consensus 148 ~~~~---~~~~~sa~~~--~~i~~l~~~i~~~~~~~~~~ 181 (210)
..|+ ++|-+|..+- .++..|.+.+.+.+...+..
T Consensus 185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 1233 4899999864 66888888888887766553
No 302
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.3e-11 Score=103.24 Aligned_cols=164 Identities=20% Similarity=0.123 Sum_probs=108.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-----CCCceeeEEEEEEEE--------EC----CeEEEEEEEeCCCCcc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-----PSPTIGVDFKIKLLT--------VG----GKRLKLTIWDTAGQER 73 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~--------~~----~~~~~~~l~Dt~G~~~ 73 (210)
.+..-++|+|+..+|||-|+..+.+..... ....+|.++....-. -+ ..-..+.++|||||+.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 345568999999999999999997765443 334445454433200 00 1123577899999999
Q ss_pred cccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------Cc-----------
Q 028315 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE------RA----------- 136 (210)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------~~----------- 136 (210)
|..++.....-||.+|+|+|+..+..-+.+. -+.+++ ..+.|+||.+||+|..-. ..
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiE--Si~lLR----~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIE--SINLLR----MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhH--HHHHHH----hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 9999999999999999999999764333332 112232 467899999999996310 00
Q ss_pred cCHH-------HHHHHHH-HcC-------------CeEEEecccCCcCHHHHHHHHHHHHHccch
Q 028315 137 VTRE-------EGMILAQ-EHK-------------CLFLECSAKNTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 137 ~~~~-------~~~~~~~-~~~-------------~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 180 (210)
+..+ .+.+|+. .++ +.++.+||..|.||.+|+-+|++.....+.
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~ 691 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV 691 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence 0000 0111111 111 347999999999999999999987665443
No 303
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=2.9e-11 Score=96.13 Aligned_cols=156 Identities=15% Similarity=0.097 Sum_probs=110.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
.|+..|+-.-|||||+..+.+..-.. .....|++.....+.....+..+.|+|.||++++-..+-.-+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 46788999999999999997765444 3444555666556566666678999999999999888888888999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH---HcCCeEEEecccCCcCHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ---EHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+.++.-..+... .+..+.. ..-...++|+||+|..++..+.. ...++.. ....++|.+|+++|.||++|.+
T Consensus 82 ~~deGl~~qtgE--hL~iLdl---lgi~~giivltk~D~~d~~r~e~-~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 82 AADEGLMAQTGE--HLLILDL---LGIKNGIIVLTKADRVDEARIEQ-KIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred eCccCcchhhHH--HHHHHHh---cCCCceEEEEeccccccHHHHHH-HHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 997653333222 2222322 12345699999999876542221 2222222 2246799999999999999999
Q ss_pred HHHHHHH
Q 028315 170 DLLYKIL 176 (210)
Q Consensus 170 ~i~~~~~ 176 (210)
.|.+...
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9888774
No 304
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.29 E-value=1.3e-10 Score=92.22 Aligned_cols=81 Identities=20% Similarity=0.211 Sum_probs=52.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeE--EEEEEEEECCeE---------------EEEEEEeCCCCcccc-
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVD--FKIKLLTVGGKR---------------LKLTIWDTAGQERFG- 75 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~- 75 (210)
++|+++|.|++|||||+|++.+... ...+.++++ .....+.+.+.. ..+.++|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 6899999999999999999988773 322223222 222233333221 258999999943211
Q ss_pred ---cch---hhhhccccEEEEEEeCC
Q 028315 76 ---TLT---SSYYRGAHGIILVYDVT 95 (210)
Q Consensus 76 ---~~~---~~~~~~~d~~i~v~d~~ 95 (210)
.+. -..++.+|++++|+|+.
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 111 22367899999999984
No 305
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.28 E-value=1.5e-10 Score=94.81 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=115.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
+.+...++|+.++|||.|++.++++.+.. ...+....+....+...+....+.+-|.+-. ....+...- ..||++++
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~ 501 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL 501 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence 57899999999999999999999988877 4455555555555566677777888887643 222222222 67999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCe-EEEecccCCcCHHHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCL-FLECSAKNTEDVKQCFK 169 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~l~~ 169 (210)
+||.+++.+|+-... ...........|.++|++|.|+.+..+...-.-.+++..++++ .+.+|.+.... .++|.
T Consensus 502 ~YDsS~p~sf~~~a~----v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~ 576 (625)
T KOG1707|consen 502 VYDSSNPRSFEYLAE----VYNKYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFI 576 (625)
T ss_pred ecccCCchHHHHHHH----HHHHhhhccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHH
Confidence 999999999886652 3333333478999999999999765432222226788888885 66777775333 88899
Q ss_pred HHHHHHHccc
Q 028315 170 DLLYKILEVP 179 (210)
Q Consensus 170 ~i~~~~~~~~ 179 (210)
.|...+..-+
T Consensus 577 kL~~~A~~Ph 586 (625)
T KOG1707|consen 577 KLATMAQYPH 586 (625)
T ss_pred HHHHhhhCCC
Confidence 9888776544
No 306
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=4.1e-11 Score=95.08 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=86.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhC---------------------CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISN---------------------SVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAG 70 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 70 (210)
+.-..+|+-+|.+|||||-.+|+.- .+.+.....|+...+....++..+..+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 4456799999999999999997521 1111223446666777777888888999999999
Q ss_pred CcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 71 QERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
|+.|..-....+..+|.+++|+|+..+..-+... +.+..+ ..++|++=++||.|...
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K--LfeVcr----lR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK--LFEVCR----LRDIPIFTFINKLDREG 147 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHHH--HHHHHh----hcCCceEEEeecccccc
Confidence 9999887777888999999999999875544443 222222 46899999999999743
No 307
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.25 E-value=6.1e-10 Score=86.21 Aligned_cols=140 Identities=20% Similarity=0.290 Sum_probs=74.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCC-----------CceeeEEEEEEEEECCeEEEEEEEeCCCCcccc---cc
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPS-----------PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG---TL 77 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~ 77 (210)
-.+||+++|.+|+|||||||.|++....... .+.........+.-++..+.+.++||||..... ..
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4699999999999999999999886543321 222333333344446778999999999932111 00
Q ss_pred hh-----------hhh-------------ccccEEEEEEeCCCH-hhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 78 TS-----------SYY-------------RGAHGIILVYDVTRR-ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 78 ~~-----------~~~-------------~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
|. .++ ...|+++|.++.+.. -.-.++. +...+ ...+++|.|+.|.|..
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~--~mk~L-----s~~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE--FMKRL-----SKRVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH--HHHHH-----TTTSEEEEEESTGGGS
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH--HHHHh-----cccccEEeEEeccccc
Confidence 10 011 247999999998753 1212222 22233 2567899999999974
Q ss_pred CCCccC--HHHHHHHHHHcCCeEEEecc
Q 028315 133 SERAVT--REEGMILAQEHKCLFLECSA 158 (210)
Q Consensus 133 ~~~~~~--~~~~~~~~~~~~~~~~~~sa 158 (210)
...++. .+.+.......++.+|....
T Consensus 156 t~~el~~~k~~i~~~l~~~~I~~f~f~~ 183 (281)
T PF00735_consen 156 TPEELQAFKQRIREDLEENNIKIFDFPE 183 (281)
T ss_dssp -HHHHHHHHHHHHHHHHHTT--S-----
T ss_pred CHHHHHHHHHHHHHHHHHcCceeecccc
Confidence 432221 11222333456676655433
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.25 E-value=3.6e-11 Score=86.41 Aligned_cols=63 Identities=25% Similarity=0.343 Sum_probs=43.4
Q ss_pred EEEEEeCCCCcc----cccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028315 62 KLTIWDTAGQER----FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKV 129 (210)
Q Consensus 62 ~~~l~Dt~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (210)
.+.|+||||... ....+..+++.+|++|+|.++.....-.... .+..... ......++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~----~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLD----PDKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHT----TTCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhc----CCCCeEEEEEcCC
Confidence 578999999532 2356777889999999999999865544443 4444443 2344488888984
No 309
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2.6e-11 Score=92.66 Aligned_cols=164 Identities=15% Similarity=0.073 Sum_probs=101.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCC--------------Cceee--------EEEEEEEEE------CCeEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPS--------------PTIGV--------DFKIKLLTV------GGKRLK 62 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~--------------~~~~~--------~~~~~~~~~------~~~~~~ 62 (210)
+.++||.++|+..-|||||...+.+---...+ ..... ..+...-.. ..--.+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 57899999999999999999998653111100 00000 001000001 012357
Q ss_pred EEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc--CHH
Q 028315 63 LTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV--TRE 140 (210)
Q Consensus 63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~ 140 (210)
+.|.|.|||+..-..+-.-..--|++++|+.++.+..-.+-. ..+..++.. .-..++++=||+|+...+.. ..+
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~-EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTR-EHLMALEII---GIKNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchH-HHHHHHhhh---ccceEEEEecccceecHHHHHHHHH
Confidence 889999999765333322233359999999999764322222 222233332 23467889999999754332 223
Q ss_pred HHHHHHHH---cCCeEEEecccCCcCHHHHHHHHHHHHHcc
Q 028315 141 EGMILAQE---HKCLFLECSAKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 141 ~~~~~~~~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 178 (210)
++..|.+. .+++++.+||..+.||+-+++.|.+.+...
T Consensus 164 qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 164 QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 44444443 367899999999999999999988887643
No 310
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.23 E-value=9.6e-11 Score=98.12 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=73.0
Q ss_pred CCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCC-ceeeEEE-EEEEEECCeEEEEEEEeCCCCcccc-------c
Q 028315 6 GNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHDPSP-TIGVDFK-IKLLTVGGKRLKLTIWDTAGQERFG-------T 76 (210)
Q Consensus 6 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~-------~ 76 (210)
..+..+..++|+++|.+|+||||++|.+++........ ..+++.. ......+ +..+.++||||..... .
T Consensus 111 g~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~nee 188 (763)
T TIGR00993 111 GQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEK 188 (763)
T ss_pred hccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCccccchHHHHH
Confidence 34445677999999999999999999999876444221 1222221 2222233 3568889999965431 1
Q ss_pred c---hhhhhc--cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCC
Q 028315 77 L---TSSYYR--GAHGIILVYDVTRRETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDS 133 (210)
Q Consensus 77 ~---~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~ 133 (210)
. ...++. .+|++|+|..+.......... .++..+..... .--.-+|||+|+.|..+
T Consensus 189 ILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~-~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 189 ILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDL-PLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHHHhcCCCCEEEEEEeCCCccccHHHH-HHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1 122333 479999998876332211111 23333332221 12246789999999865
No 311
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.23 E-value=7.1e-10 Score=82.30 Aligned_cols=156 Identities=15% Similarity=0.089 Sum_probs=91.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc-------ccchhhhhccc
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF-------GTLTSSYYRGA 85 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 85 (210)
.-||+++|.|++|||||+..+. ...++......++.......+...+..+++.|+||.-.- ....-...+.+
T Consensus 62 daRValIGfPSVGKStlLs~iT-~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKIT-STHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhh-cchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 4799999999999999999884 444443344444455554444444556788899994221 23334456889
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC------CCCccCHHHHHHHHHHcCCeEEEeccc
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD------SERAVTREEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~sa~ 159 (210)
|.+++|.|++..+.-..+.+.-++.+....++.+..+.+--.|..-. +-...++..+......+.+.--++-.+
T Consensus 141 DlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~R 220 (364)
T KOG1486|consen 141 DLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFR 220 (364)
T ss_pred cEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEe
Confidence 99999999998876665555556666665533333344433333321 122334444555555554433333334
Q ss_pred CCcCHHHHHH
Q 028315 160 NTEDVKQCFK 169 (210)
Q Consensus 160 ~~~~i~~l~~ 169 (210)
....++++.+
T Consensus 221 eD~t~DdfID 230 (364)
T KOG1486|consen 221 EDCTVDDFID 230 (364)
T ss_pred cCCChHHHHH
Confidence 4444555433
No 312
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.22 E-value=1.3e-10 Score=91.22 Aligned_cols=104 Identities=15% Similarity=0.099 Sum_probs=64.3
Q ss_pred EEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCH
Q 028315 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTR 139 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 139 (210)
++.+.|+||+|.-... ...+..+|.++++.+..... ++. .+...+ .++|.++++||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~---el~-~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGD---DLQ-GIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccH---HHH-HHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 5788999999853211 23466788888886544332 222 222222 3567799999999865432111
Q ss_pred HH------HHHHHH---HcCCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 140 EE------GMILAQ---EHKCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 140 ~~------~~~~~~---~~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
.. ...+.. .+..+++.+||+++.|++++++++.+.+.
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00 011111 13346999999999999999999988643
No 313
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.22 E-value=1.9e-10 Score=88.36 Aligned_cols=80 Identities=21% Similarity=0.247 Sum_probs=51.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCCccc----c
Q 028315 16 ILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGK---------------RLKLTIWDTAGQERF----G 75 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~----~ 75 (210)
|+++|.|+||||||+|++++..... ..|..+.+.....+.+.+. ...+.++|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999998877632 2233322233333333332 135899999994321 1
Q ss_pred cchh---hhhccccEEEEEEeCC
Q 028315 76 TLTS---SYYRGAHGIILVYDVT 95 (210)
Q Consensus 76 ~~~~---~~~~~~d~~i~v~d~~ 95 (210)
.+.. ..++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1222 2357899999999874
No 314
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.19 E-value=5.9e-11 Score=96.38 Aligned_cols=164 Identities=23% Similarity=0.392 Sum_probs=122.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
.++|++|+|..++|||+|+++++.+.+.....+.+..+ .+.+.+++...-+.+.|.+|... ..|-.++|++|+|
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~-kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv 102 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRF-KKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV 102 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccc-eeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence 46999999999999999999999999888554444444 45556777777777888877432 3566789999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC--CCCCccCHHHHHHH-HHHcCCeEEEecccCCcCHHHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR--DSERAVTREEGMIL-AQEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl--~~~~~~~~~~~~~~-~~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
|.+.+..+|+.+. .+...+..+.....+|.++++++.-. ..++.+...+...+ +....+.||++.+..|.++...|
T Consensus 103 f~~~d~~s~q~v~-~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQ-ALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEeccccCHHHHH-HHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 9999999999988 44444544443567888888877543 23455555555544 44556789999999999999999
Q ss_pred HHHHHHHHccchhh
Q 028315 169 KDLLYKILEVPSLL 182 (210)
Q Consensus 169 ~~i~~~~~~~~~~~ 182 (210)
+.+...+...++.+
T Consensus 182 ~~~~~k~i~~~~~q 195 (749)
T KOG0705|consen 182 QEVAQKIVQLRKYQ 195 (749)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999877664433
No 315
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=3.3e-10 Score=94.00 Aligned_cols=118 Identities=26% Similarity=0.341 Sum_probs=86.4
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCC-C---------c------eeeEEEEEEEE-----ECCeEEEEEEE
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHDPS-P---------T------IGVDFKIKLLT-----VGGKRLKLTIW 66 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~---------~------~~~~~~~~~~~-----~~~~~~~~~l~ 66 (210)
...++..+|+++|+-+.|||+|+..|.....+... + + .+........+ ..+.++-++++
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 34477899999999999999999998766543311 1 1 11111111111 14567899999
Q ss_pred eCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028315 67 DTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131 (210)
Q Consensus 67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 131 (210)
|||||-.|.......++.+|++++|+|+.+.-.+.... .+...+ ....|+++|+||.|.
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~ikhai-----q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-IIKHAI-----QNRLPIVVVINKVDR 261 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HHHHHH-----hccCcEEEEEehhHH
Confidence 99999999988889999999999999999887665444 333333 367899999999995
No 316
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.13 E-value=5e-10 Score=85.21 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=92.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCCceee----------------EEEEEEEE--------
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSV-----------HDPSPTIGV----------------DFKIKLLT-------- 55 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-----------~~~~~~~~~----------------~~~~~~~~-------- 55 (210)
.+...|+|.|.||+|||||+..|..... .+.+|.++. ..+.....
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 3567899999999999999999843211 111111111 11111111
Q ss_pred ----------ECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEE
Q 028315 56 ----------VGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILV 125 (210)
Q Consensus 56 ----------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 125 (210)
++-.++.++|++|.|.-..+. .....+|.+++|.-..-.+..+.++.-..++ -=++|
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi----------aDi~v 195 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI----------ADIIV 195 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh----------hheee
Confidence 122345778888887433222 2345689999998888777777766433333 22899
Q ss_pred EeCCCCCCCCccCHHH--HHHHH------HHcCCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 126 GNKVDRDSERAVTREE--GMILA------QEHKCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 126 ~nK~Dl~~~~~~~~~~--~~~~~------~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
+||.|.......-.+. +..+. ..|..+++.+||..|.|++++++.+.+...
T Consensus 196 INKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 196 INKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred EeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 9999964432111111 11111 123457999999999999999999887643
No 317
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.10 E-value=3.2e-11 Score=90.33 Aligned_cols=150 Identities=19% Similarity=0.219 Sum_probs=84.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCCce----------------eeEEEEEEEEE--------
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSV-----------HDPSPTI----------------GVDFKIKLLTV-------- 56 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~-----------~~~~~~~----------------~~~~~~~~~~~-------- 56 (210)
+.+.|+|.|+||+|||||+..|..... .+.+|.. ....+.....-
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 467999999999999999999843110 0011111 11222222211
Q ss_pred ----------CCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEE
Q 028315 57 ----------GGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVG 126 (210)
Q Consensus 57 ----------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (210)
+..++.++|++|.|.-..+ -....-+|.+++|.-..-.+..+.++..+.+. +=++|+
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi----------aDi~vV 174 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI----------ADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-----------SEEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh----------ccEEEE
Confidence 1113567778887742221 23355689999999988877776665333333 338999
Q ss_pred eCCCCCCCCccCHH--HHHHHHH----HcCCeEEEecccCCcCHHHHHHHHHHH
Q 028315 127 NKVDRDSERAVTRE--EGMILAQ----EHKCLFLECSAKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 127 nK~Dl~~~~~~~~~--~~~~~~~----~~~~~~~~~sa~~~~~i~~l~~~i~~~ 174 (210)
||.|.......-.+ .+..+.. .|..+++.+||.++.|++++++.|.+.
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 99996433222111 1112211 134589999999999999999888774
No 318
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.09 E-value=1.5e-09 Score=77.77 Aligned_cols=80 Identities=20% Similarity=0.096 Sum_probs=55.0
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHc--CCeEEEecccCCcC
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEH--KCLFLECSAKNTED 163 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~~~ 163 (210)
+.-|+|+|+...+-. ...--+.+ ...=++|+||.|+.+.-..+.+...+-++.. +.+++++|+++|.|
T Consensus 119 ~~~v~VidvteGe~~---P~K~gP~i-------~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G 188 (202)
T COG0378 119 HLRVVVIDVTEGEDI---PRKGGPGI-------FKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEG 188 (202)
T ss_pred ceEEEEEECCCCCCC---cccCCCce-------eEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcC
Confidence 377888888866421 10000000 1245899999999877666666666555544 56899999999999
Q ss_pred HHHHHHHHHHHH
Q 028315 164 VKQCFKDLLYKI 175 (210)
Q Consensus 164 i~~l~~~i~~~~ 175 (210)
++++++|+...+
T Consensus 189 ~~~~~~~i~~~~ 200 (202)
T COG0378 189 LDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHHhhc
Confidence 999999987654
No 319
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=7.6e-09 Score=81.34 Aligned_cols=84 Identities=24% Similarity=0.262 Sum_probs=56.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEEC----------------CeEEEEEEEeCCCC----
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVG----------------GKRLKLTIWDTAGQ---- 71 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~---- 71 (210)
.++++|+|.|+||||||+|.++...... .+|..+++-....+.+. -....+.|+|.+|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 3789999999999999999998877432 44444433333333321 11357889999982
Q ss_pred ---cccccchhhhhccccEEEEEEeCCC
Q 028315 72 ---ERFGTLTSSYYRGAHGIILVYDVTR 96 (210)
Q Consensus 72 ---~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (210)
+......-..+|++|+++.|+|..+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 2223333344789999999999984
No 320
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.09 E-value=1.2e-09 Score=81.48 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=69.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc-------ccchhhhhcccc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF-------GTLTSSYYRGAH 86 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~d 86 (210)
-++.++|.|++||||++..+ .+.+.+.....+++.......+......+++.|+||.-+- ....-...+.|+
T Consensus 60 a~vg~vgFPSvGksTl~~~l-~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKL-TGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred eeeeEEecCccchhhhhhhh-cCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 48999999999999999998 4455555555555555555555556678999999994221 233344568899
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHh
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVE 112 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~ 112 (210)
.+++|.|+..|.+...+.+.-++-+.
T Consensus 139 li~~vld~~kp~~hk~~ie~eleg~g 164 (358)
T KOG1487|consen 139 LIFIVLDVLKPLSHKKIIEKELEGFG 164 (358)
T ss_pred EEEEEeeccCcccHHHHHHHhhhcce
Confidence 99999999998777666544444443
No 321
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=5.9e-10 Score=84.46 Aligned_cols=143 Identities=15% Similarity=0.084 Sum_probs=98.1
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhC----------CCCC-----CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISN----------SVHD-----PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT 76 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~----------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 76 (210)
...||..+|+.+-|||||...+..- .+.+ .....+.+.....+.+......+-..|+|||..|-.
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence 4799999999999999998887431 1111 223456777777777766666777889999999988
Q ss_pred chhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCCccC---HHHHHHHHHHcCC-
Q 028315 77 LTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCV-KILVGNKVDRDSERAVT---REEGMILAQEHKC- 151 (210)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~- 151 (210)
++..-..+.|+.|+|+.+.+..--+... .. ++.+ .-++| +++++||+|+.+.+++. +.+.+++...+++
T Consensus 91 NMItgAaqmDgAILVVsA~dGpmPqTrE-Hi--Llar---qvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGPMPQTRE-HI--LLAR---QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCCCCcchh-hh--hhhh---hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 7777778899999999999864323222 11 1122 23555 56778999998754432 3356667777765
Q ss_pred ----eEEEecccC
Q 028315 152 ----LFLECSAKN 160 (210)
Q Consensus 152 ----~~~~~sa~~ 160 (210)
|++.-||..
T Consensus 165 gd~~Pii~gSal~ 177 (394)
T COG0050 165 GDDTPIIRGSALK 177 (394)
T ss_pred CCCcceeechhhh
Confidence 477777664
No 322
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.07 E-value=1.6e-09 Score=85.07 Aligned_cols=123 Identities=18% Similarity=0.158 Sum_probs=83.0
Q ss_pred EECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhh----------HHHHHHHHHHHHhhhccCCCCcEEE
Q 028315 55 TVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRET----------FTNLSSVWAKEVELYSTNQDCVKIL 124 (210)
Q Consensus 55 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~----------~~~~~~~~~~~~~~~~~~~~~p~iv 124 (210)
.+.-.+..+.++|.+|+...+.-|..++.+++++|+|+++++.+. +.+....|...+.... -.+.++++
T Consensus 189 ~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~-F~~tsiiL 267 (354)
T KOG0082|consen 189 EFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW-FANTSIIL 267 (354)
T ss_pred EEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc-cccCcEEE
Confidence 344445678889999999999999999999999999999997432 2222223333332222 45789999
Q ss_pred EEeCCCCCCC---------------CccCHHHHHHHHH--------H--cCCeEEEecccCCcCHHHHHHHHHHHHHcc
Q 028315 125 VGNKVDRDSE---------------RAVTREEGMILAQ--------E--HKCLFLECSAKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 125 v~nK~Dl~~~---------------~~~~~~~~~~~~~--------~--~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 178 (210)
++||.|+-.+ ..-..+++..+.. . ..+-++.+.|.+..+|+.+|+.+...+...
T Consensus 268 FLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 268 FLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred EeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 9999997210 1112223332221 1 123477889999999999999999888754
No 323
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.04 E-value=1.4e-09 Score=79.86 Aligned_cols=94 Identities=18% Similarity=0.046 Sum_probs=65.8
Q ss_pred cccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHH-----HH
Q 028315 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILA-----QE 148 (210)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~ 148 (210)
+...+..+++.+|++++|+|+.++.. .|...+... ..+.|+++|+||+|+.+... ..+....+. ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~------~~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG------SLIPRLRLF--GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC------ccchhHHHh--cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhh
Confidence 46677788899999999999987642 122222211 24689999999999865332 222233332 22
Q ss_pred cCC---eEEEecccCCcCHHHHHHHHHHHHH
Q 028315 149 HKC---LFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 149 ~~~---~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
.+. .++.+||++|.|+++++++|.+.+.
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 332 5899999999999999999988775
No 324
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.02 E-value=4.3e-09 Score=79.43 Aligned_cols=69 Identities=25% Similarity=0.194 Sum_probs=43.5
Q ss_pred EEEEEEeCCCCccc-------------ccchhhhhc-cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEE
Q 028315 61 LKLTIWDTAGQERF-------------GTLTSSYYR-GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVG 126 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (210)
..+.++||||.... ..+...+++ ..+.+++|+|+.....-.... .+...+. ..+.|+++|+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l-~ia~~ld----~~~~rti~Vi 199 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL-KLAKEVD----PQGERTIGVI 199 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH-HHHHHHH----HcCCcEEEEE
Confidence 57889999996321 123445566 456899999887543322222 2223332 4678999999
Q ss_pred eCCCCCCC
Q 028315 127 NKVDRDSE 134 (210)
Q Consensus 127 nK~Dl~~~ 134 (210)
||.|....
T Consensus 200 TK~D~~~~ 207 (240)
T smart00053 200 TKLDLMDE 207 (240)
T ss_pred ECCCCCCc
Confidence 99998653
No 325
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.01 E-value=1.3e-10 Score=89.27 Aligned_cols=56 Identities=21% Similarity=0.137 Sum_probs=39.8
Q ss_pred CCcEEEEEeCCCCCCCCccCHHHHHHHHHH--cCCeEEEecccCCcCHHHHHHHHHHH
Q 028315 119 DCVKILVGNKVDRDSERAVTREEGMILAQE--HKCLFLECSAKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 119 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i~~l~~~i~~~ 174 (210)
..+-++|+||+|+.+......+......+. .+++++.+||++|.|++++++||.++
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 346699999999965322223333333333 36789999999999999999999774
No 326
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.00 E-value=9.5e-10 Score=78.09 Aligned_cols=95 Identities=15% Similarity=0.031 Sum_probs=64.9
Q ss_pred ccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 028315 75 GTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFL 154 (210)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (210)
+.+++..++++|++++|+|+.++...... .+...+. ..+.|+++|+||+|+.+.... .....+....+.+++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~----~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~ 74 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVL----ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVV 74 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHH----hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEE
Confidence 44566777889999999999876432221 1222221 246899999999998543211 111123334567899
Q ss_pred EecccCCcCHHHHHHHHHHHHHc
Q 028315 155 ECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 155 ~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
.+||+++.|++++++.+.+.+..
T Consensus 75 ~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 75 YVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEEccccccHHHHHHHHHHHHhh
Confidence 99999999999999999887753
No 327
>PRK00098 GTPase RsgA; Reviewed
Probab=99.00 E-value=2.5e-09 Score=83.81 Aligned_cols=87 Identities=22% Similarity=0.151 Sum_probs=64.2
Q ss_pred hhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccC
Q 028315 81 YYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKN 160 (210)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 160 (210)
.+.++|.+++|+|+.++..+....+.|+..+. ..++|+++|+||+|+.+... ...+........+.+++.+||++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~----~~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~ 151 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAE----ANGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKE 151 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCC
Confidence 35899999999999988766555446766554 35789999999999963221 11223334455688999999999
Q ss_pred CcCHHHHHHHHH
Q 028315 161 TEDVKQCFKDLL 172 (210)
Q Consensus 161 ~~~i~~l~~~i~ 172 (210)
+.|++++++.+.
T Consensus 152 g~gi~~L~~~l~ 163 (298)
T PRK00098 152 GEGLDELKPLLA 163 (298)
T ss_pred CccHHHHHhhcc
Confidence 999999988763
No 328
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=3.8e-09 Score=82.51 Aligned_cols=119 Identities=21% Similarity=0.266 Sum_probs=80.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEEEEEECCeEE---------------------------
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIKLLTVGGKRL--------------------------- 61 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------------------------- 61 (210)
+..-=|+++|.-+.||||||+.|+...++. ..|.+.+++.....+-+.+++
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 444568999999999999999999998877 556666666665544322211
Q ss_pred ------------EEEEEeCCCCc-----------ccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCC
Q 028315 62 ------------KLTIWDTAGQE-----------RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQ 118 (210)
Q Consensus 62 ------------~~~l~Dt~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (210)
.+.++||||.- .|.....=|...+|.++++||+..-+--. .+.+.+.... ..
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsd----Ef~~vi~aLk-G~ 210 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISD----EFKRVIDALK-GH 210 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccH----HHHHHHHHhh-CC
Confidence 78899999932 12234455678899999999987543222 2223333333 34
Q ss_pred CCcEEEEEeCCCCCCC
Q 028315 119 DCVKILVGNKVDRDSE 134 (210)
Q Consensus 119 ~~p~ivv~nK~Dl~~~ 134 (210)
.-.+-||+||.|..+.
T Consensus 211 EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVDT 226 (532)
T ss_pred cceeEEEeccccccCH
Confidence 4567899999998654
No 329
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.00 E-value=1.2e-09 Score=78.60 Aligned_cols=58 Identities=26% Similarity=0.356 Sum_probs=47.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (210)
...++++++|.||+|||||+|++.+.......+.++.+.....+.++. .+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCC---CEEEEECcCC
Confidence 345899999999999999999999888777777788888766665543 5788999983
No 330
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.99 E-value=1.6e-09 Score=77.03 Aligned_cols=57 Identities=28% Similarity=0.343 Sum_probs=44.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCC
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (210)
..++|+++|.||+|||||+|++.+.......++++.+.....+.... .+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcCC
Confidence 45789999999999999999999887767777777777655544432 3678899983
No 331
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.99 E-value=1.1e-09 Score=76.38 Aligned_cols=54 Identities=28% Similarity=0.361 Sum_probs=44.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (210)
+++++|.+|+|||||+|++.+..........+.+.....+.++. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999887766666666666666666654 4789999995
No 332
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.94 E-value=1.2e-09 Score=83.82 Aligned_cols=152 Identities=16% Similarity=0.131 Sum_probs=89.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEE--EEEEECCeEEEEEEEeCCCC---------cccccchhhh
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKI--KLLTVGGKRLKLTIWDTAGQ---------ERFGTLTSSY 81 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~~ 81 (210)
.--|.++|.+++|||||++.|....... ....+.+... ...+... +..+.+.||-|. ..|..... .
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p-~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~ATLe-e 254 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYP-NDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQATLE-E 254 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCc-cchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHHHH-H
Confidence 3468999999999999999998444322 1222222222 2222222 334566799982 22222222 2
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcE----EEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEec
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK----ILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s 157 (210)
...+|.++.|.|+++|.--+... ..+..+.... -+..|. +=|=||+|....... .+..+ .+.+|
T Consensus 255 VaeadlllHvvDiShP~ae~q~e-~Vl~vL~~ig-v~~~pkl~~mieVdnkiD~e~~~~e--------~E~n~--~v~is 322 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRE-TVLHVLNQIG-VPSEPKLQNMIEVDNKIDYEEDEVE--------EEKNL--DVGIS 322 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHH-HHHHHHHhcC-CCcHHHHhHHHhhccccccccccCc--------cccCC--ccccc
Confidence 45799999999999997544444 3344443322 122232 334577776433211 11122 68899
Q ss_pred ccCCcCHHHHHHHHHHHHHccc
Q 028315 158 AKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 158 a~~~~~i~~l~~~i~~~~~~~~ 179 (210)
|++|.|.+++.+.+-..+....
T Consensus 323 altgdgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEETKVASET 344 (410)
T ss_pred cccCccHHHHHHHHHHHhhhhh
Confidence 9999999999888777665443
No 333
>PRK12289 GTPase RsgA; Reviewed
Probab=98.92 E-value=5.9e-09 Score=83.06 Aligned_cols=92 Identities=18% Similarity=0.081 Sum_probs=65.2
Q ss_pred ccchhhhhccccEEEEEEeCCCHh-hHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeE
Q 028315 75 GTLTSSYYRGAHGIILVYDVTRRE-TFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLF 153 (210)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (210)
..+....+.++|.+++|+|+.++. ....+. .|+.... ..+.|+++|+||+|+...... +........++..+
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~Ld-R~L~~a~----~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v 152 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLS-RFLVKAE----STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQP 152 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHH-HHHHHHH----HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeE
Confidence 344455688999999999998775 333334 5554442 367899999999999643221 11222334678899
Q ss_pred EEecccCCcCHHHHHHHHHH
Q 028315 154 LECSAKNTEDVKQCFKDLLY 173 (210)
Q Consensus 154 ~~~sa~~~~~i~~l~~~i~~ 173 (210)
+.+||+++.|++++++.+..
T Consensus 153 ~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 153 LFISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEEEcCCCCCHHHHhhhhcc
Confidence 99999999999999988764
No 334
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.91 E-value=8.3e-08 Score=78.12 Aligned_cols=116 Identities=14% Similarity=0.148 Sum_probs=80.5
Q ss_pred eEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCH----------hhHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028315 59 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR----------ETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128 (210)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (210)
....+.++|++|+...+.-|..++.+++++|+|+++++. ..+.+....|...+.... ..+.|++|++||
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~-~~~~~iil~lnK 312 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW-FKNTPIILFLNK 312 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG-GTTSEEEEEEE-
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc-cccCceEEeeec
Confidence 445788999999999999999999999999999998853 234444546666655443 458899999999
Q ss_pred CCCC------CC----------Cc--cCHHHHHHHHHH------------cCCeEEEecccCCcCHHHHHHHHHHHH
Q 028315 129 VDRD------SE----------RA--VTREEGMILAQE------------HKCLFLECSAKNTEDVKQCFKDLLYKI 175 (210)
Q Consensus 129 ~Dl~------~~----------~~--~~~~~~~~~~~~------------~~~~~~~~sa~~~~~i~~l~~~i~~~~ 175 (210)
.|+- .+ .. -+.+.+..+... ..+.++.++|.+..+++.+|+.+.+.+
T Consensus 313 ~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 313 IDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9961 11 11 233444433321 122477899999999999998877643
No 335
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.91 E-value=5.3e-08 Score=76.25 Aligned_cols=139 Identities=22% Similarity=0.328 Sum_probs=83.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-----------CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc---cc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-----------PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF---GT 76 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~ 76 (210)
.-.++|.++|+.|.|||||+|.|++..... ..++.....+...+.-++...++.++||||.-.+ ..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 357999999999999999999998763211 2244444444444445677889999999993222 11
Q ss_pred chh-----------hhh--------------ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028315 77 LTS-----------SYY--------------RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131 (210)
Q Consensus 77 ~~~-----------~~~--------------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 131 (210)
.|. .++ ..+|+++|.+..+.. .+..+. ...+... ...+.+|.|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~D---Ie~Mk~l--s~~vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLD---IEAMKRL--SKRVNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHH---HHHHHHH--hcccCeeeeeecccc
Confidence 221 111 247999999986643 122222 1122222 256678999999997
Q ss_pred CCCCccC--HHHHHHHHHHcCCeEEE
Q 028315 132 DSERAVT--REEGMILAQEHKCLFLE 155 (210)
Q Consensus 132 ~~~~~~~--~~~~~~~~~~~~~~~~~ 155 (210)
-...+.. .+.+.+....+++++|.
T Consensus 175 lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 175 LTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 4332221 22344445566777664
No 336
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.87 E-value=6.5e-09 Score=74.98 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=46.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (210)
...++++++|.+|+|||||++++.+..+....+.+++++....+.++ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 45589999999999999999999988776666666667666666654 35789999994
No 337
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.87 E-value=1.2e-08 Score=79.62 Aligned_cols=88 Identities=16% Similarity=0.085 Sum_probs=65.4
Q ss_pred hhhhccccEEEEEEeCCCHh-hHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEec
Q 028315 79 SSYYRGAHGIILVYDVTRRE-TFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157 (210)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s 157 (210)
+..+.++|.+++|+|+.++. ++..+. .|+..+. ..++|+++|+||+|+.+... ...........+.+++.+|
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ld-r~L~~~~----~~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vS 145 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLD-RYLVAAE----AAGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVS 145 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHH-HHHHHHH----HcCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEE
Confidence 34478999999999999887 777666 5666554 25689999999999965411 1122233345688999999
Q ss_pred ccCCcCHHHHHHHHHH
Q 028315 158 AKNTEDVKQCFKDLLY 173 (210)
Q Consensus 158 a~~~~~i~~l~~~i~~ 173 (210)
|+++.|+++++..+..
T Consensus 146 A~~g~gi~~L~~~L~~ 161 (287)
T cd01854 146 AKTGEGLDELREYLKG 161 (287)
T ss_pred CCCCccHHHHHhhhcc
Confidence 9999999998887653
No 338
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.86 E-value=2.4e-08 Score=78.45 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=98.9
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCc--------------eeeEEEEEEEEE-----------------
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPT--------------IGVDFKIKLLTV----------------- 56 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~--------------~~~~~~~~~~~~----------------- 56 (210)
..+.++.|+.+|+.+.|||||+-.|..+.... ...+ ...+.....+-+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 34678999999999999999999886654333 1100 001111111111
Q ss_pred ----CCeEEEEEEEeCCCCccccc-ch-hhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCC
Q 028315 57 ----GGKRLKLTIWDTAGQERFGT-LT-SSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD 130 (210)
Q Consensus 57 ----~~~~~~~~l~Dt~G~~~~~~-~~-~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (210)
...+.-+.|.||.||+.|-. .. ..+-...|..++++.+++..+-- ....+..+. --+.|++|++||+|
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~--tkEHLgi~~----a~~lPviVvvTK~D 266 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM--TKEHLGIAL----AMELPVIVVVTKID 266 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh--hhHhhhhhh----hhcCCEEEEEEecc
Confidence 11224577889999998843 23 33345789999999999875421 111112111 35789999999999
Q ss_pred CCCCCccCH--HHHHHH----------------------HHHc---CCeEEEecccCCcCHHHHHHHHHHHHHccc
Q 028315 131 RDSERAVTR--EEGMIL----------------------AQEH---KCLFLECSAKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 131 l~~~~~~~~--~~~~~~----------------------~~~~---~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 179 (210)
+.++..+.. +++..+ +-.. -+|+|.+|+.+|.|++- ++.++..+..++
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl-L~e~f~~Lp~rr 341 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL-LDEFFLLLPKRR 341 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH-HHHHHHhCCccc
Confidence 875422211 111111 1111 24799999999999776 566666666554
No 339
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.3e-07 Score=74.52 Aligned_cols=144 Identities=19% Similarity=0.284 Sum_probs=83.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCC----------CCceeeEEEEEEEEECCeEEEEEEEeCCCCccc---ccch
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDP----------SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF---GTLT 78 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~~ 78 (210)
-.+++.++|..|.|||||||.|+....... ..+.........+.-++...+++++||||.-.. ...|
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 469999999999999999999987643321 112222333223333566789999999992211 1111
Q ss_pred -----------hhhh-------------ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028315 79 -----------SSYY-------------RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE 134 (210)
Q Consensus 79 -----------~~~~-------------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 134 (210)
..++ ..+|+++|.+..+.. .+..+. ...+... ...+.+|.|+-|.|....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D---i~~Mk~l--~~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD---IEFMKKL--SKKVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh---HHHHHHH--hccccccceeeccccCCH
Confidence 1111 257999999987643 111111 1122222 256788999999997543
Q ss_pred CccC--HHHHHHHHHHcCCeEEEecccCC
Q 028315 135 RAVT--REEGMILAQEHKCLFLECSAKNT 161 (210)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~~sa~~~ 161 (210)
.++. ...+..-....++++|.......
T Consensus 174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 174 DELNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 3221 22334444566777766655544
No 340
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.84 E-value=1e-08 Score=79.59 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=47.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (210)
...++++++|.||+|||||+|++.+.......+.++.|.....+.++. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 456899999999999999999999887766677777777766666543 4689999996
No 341
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.83 E-value=1.5e-08 Score=79.04 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=48.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (210)
...++++++|.||||||||+|++.+.......+.++.|.....+.++. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 456899999999999999999999887767777888877776655543 47799999963
No 342
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.82 E-value=8.2e-09 Score=81.58 Aligned_cols=57 Identities=23% Similarity=0.383 Sum_probs=50.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCC
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (210)
..++++++|.|+||||||||+|.+.......+.+|.|.....+.++.. +.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 458899999999999999999999998888888899999888877765 788999994
No 343
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.82 E-value=1.4e-08 Score=72.07 Aligned_cols=56 Identities=30% Similarity=0.389 Sum_probs=42.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAG 70 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 70 (210)
...+++++|.+++|||||++++.+.....+.++.+.+........+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 45788999999999999999998766656677777665543333332 588999998
No 344
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4.9e-09 Score=83.12 Aligned_cols=136 Identities=16% Similarity=0.187 Sum_probs=102.5
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCC--------CCC---------CCCceeeEEEEEEEEECCeEEEEEEEeCCCC
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNS--------VHD---------PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~--------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (210)
...+--||+++.+..+||||.-.|++.-. ... .....|++.....+.++..++++.++||||+
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence 33456689999999999999999875321 111 1234578888888999999999999999999
Q ss_pred cccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC
Q 028315 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC 151 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 151 (210)
-.|.-.....++-.|+++.|||++-+-..+.+. .|++. .+.++|....+||+|....+- .........++++
T Consensus 113 vdf~leverclrvldgavav~dasagve~qtlt-vwrqa-----dk~~ip~~~finkmdk~~anf--e~avdsi~ekl~a 184 (753)
T KOG0464|consen 113 VDFRLEVERCLRVLDGAVAVFDASAGVEAQTLT-VWRQA-----DKFKIPAHCFINKMDKLAANF--ENAVDSIEEKLGA 184 (753)
T ss_pred ceEEEEHHHHHHHhcCeEEEEeccCCcccceee-eehhc-----cccCCchhhhhhhhhhhhhhh--hhHHHHHHHHhCC
Confidence 999999999999999999999999876666666 56544 357889999999999754321 1223344555665
Q ss_pred e
Q 028315 152 L 152 (210)
Q Consensus 152 ~ 152 (210)
.
T Consensus 185 k 185 (753)
T KOG0464|consen 185 K 185 (753)
T ss_pred c
Confidence 4
No 345
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.79 E-value=2.2e-08 Score=80.46 Aligned_cols=95 Identities=21% Similarity=0.177 Sum_probs=69.0
Q ss_pred CcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHH----HH
Q 028315 71 QERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMI----LA 146 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~ 146 (210)
.+.|..+...+++.++++++|+|+.+... .|...+.... .+.|+++|+||+|+.+. ....+.... +.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~--~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~ 120 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFV--GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRA 120 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHh--CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHH
Confidence 45677777788889999999999977542 3444444443 36799999999998653 333333332 34
Q ss_pred HHcCC---eEEEecccCCcCHHHHHHHHHHH
Q 028315 147 QEHKC---LFLECSAKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 147 ~~~~~---~~~~~sa~~~~~i~~l~~~i~~~ 174 (210)
...++ .++.+||++|.|++++++.+.+.
T Consensus 121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 55665 48999999999999999998664
No 346
>PRK12288 GTPase RsgA; Reviewed
Probab=98.77 E-value=5.5e-08 Score=77.54 Aligned_cols=87 Identities=15% Similarity=0.101 Sum_probs=64.4
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc-CHHHHHHHHHHcCCeEEEecccC
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV-TREEGMILAQEHKCLFLECSAKN 160 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~sa~~ 160 (210)
..++|.+++|++.....++..+. .|+.... ..++|.++|+||+|+.+.... ...+........+.+++.+||++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ld-r~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~t 192 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIID-RYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHT 192 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHH-HHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 46799999999998777888777 6665443 356899999999999653211 11122233345678999999999
Q ss_pred CcCHHHHHHHHHH
Q 028315 161 TEDVKQCFKDLLY 173 (210)
Q Consensus 161 ~~~i~~l~~~i~~ 173 (210)
+.|++++++.|..
T Consensus 193 g~GideL~~~L~~ 205 (347)
T PRK12288 193 GEGLEELEAALTG 205 (347)
T ss_pred CcCHHHHHHHHhh
Confidence 9999999988865
No 347
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.77 E-value=1.3e-08 Score=79.85 Aligned_cols=166 Identities=15% Similarity=0.189 Sum_probs=97.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-------------------CCCce-----ee---------------EEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-------------------PSPTI-----GV---------------DFKIK 52 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-------------------~~~~~-----~~---------------~~~~~ 52 (210)
-++||+++|+..+|||||+.-|..+.... ..... +. .....
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 37999999999999999987663321110 11111 11 11111
Q ss_pred EEEECCeEEEEEEEeCCCCcccccch--hhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCC
Q 028315 53 LLTVGGKRLKLTIWDTAGQERFGTLT--SSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD 130 (210)
Q Consensus 53 ~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (210)
.+ ..+...-+.|+|++|++.|.... ...-+-.|-.++++.++-..- ... .+.+.. .....+|++||++|+|
T Consensus 212 kI-ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi--GmT---KEHLgL-ALaL~VPVfvVVTKID 284 (641)
T KOG0463|consen 212 KI-CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII--GMT---KEHLGL-ALALHVPVFVVVTKID 284 (641)
T ss_pred ee-ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce--ecc---HHhhhh-hhhhcCcEEEEEEeec
Confidence 11 12223467899999999985432 222344688888887765421 111 111111 1135789999999999
Q ss_pred CCCCCccCHHH--HHHHHHH--------------------------cCCeEEEecccCCcCHHHHHHHHHHHHHccchhh
Q 028315 131 RDSERAVTREE--GMILAQE--------------------------HKCLFLECSAKNTEDVKQCFKDLLYKILEVPSLL 182 (210)
Q Consensus 131 l~~~~~~~~~~--~~~~~~~--------------------------~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~ 182 (210)
..+.+.+.+.. ...+.+. .-+++|++|-.+|.|++. +..++..+..+++..
T Consensus 285 MCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L-LkmFLNlls~R~~~~ 363 (641)
T KOG0463|consen 285 MCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL-LKMFLNLLSLRRQLN 363 (641)
T ss_pred cCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-HHHHHhhcCcccccc
Confidence 98765443221 1111111 125789999999999875 667777777777766
Q ss_pred hcc
Q 028315 183 EQG 185 (210)
Q Consensus 183 ~~~ 185 (210)
+++
T Consensus 364 E~~ 366 (641)
T KOG0463|consen 364 END 366 (641)
T ss_pred cCC
Confidence 654
No 348
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.76 E-value=2.6e-08 Score=75.14 Aligned_cols=155 Identities=17% Similarity=0.108 Sum_probs=93.8
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEEEEEECCeEEEEEEEeCCC----------Ccccccc
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIKLLTVGGKRLKLTIWDTAG----------QERFGTL 77 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~ 77 (210)
.....+++++|.+++|||+|++.+...+... ..+..+.+.......+. -.+.+.|.|| ...+...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHh
Confidence 3567899999999999999999998776444 33355554444333333 4567779999 1222333
Q ss_pred hhhhhc---cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC-------ccCHHH-HHHHH
Q 028315 78 TSSYYR---GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER-------AVTREE-GMILA 146 (210)
Q Consensus 78 ~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------~~~~~~-~~~~~ 146 (210)
...++. +--.+++++|++-+.. .......++++ ..++|..+|+||+|....- ...... ...+.
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~--~~D~~~i~~~g----e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQ--PTDNPEIAWLG----ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCC--CCChHHHHHHh----hcCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 444443 2346677788876532 22212333343 4789999999999964210 011000 11111
Q ss_pred H---HcCCeEEEecccCCcCHHHHHHHHHH
Q 028315 147 Q---EHKCLFLECSAKNTEDVKQCFKDLLY 173 (210)
Q Consensus 147 ~---~~~~~~~~~sa~~~~~i~~l~~~i~~ 173 (210)
. .-..+++.+|+.++.|+++++-.+.+
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhh
Confidence 1 11246788999999999998765554
No 349
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.6e-07 Score=77.44 Aligned_cols=142 Identities=17% Similarity=0.266 Sum_probs=84.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEE--------------------------------------
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKI-------------------------------------- 51 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~-------------------------------------- 51 (210)
...||+|.|..++||||++|.++....-+ ..+++..-..+
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 56899999999999999999997654322 22221110000
Q ss_pred -----EEEEECCe----EEEEEEEeCCCCc---ccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCC
Q 028315 52 -----KLLTVGGK----RLKLTIWDTAGQE---RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQD 119 (210)
Q Consensus 52 -----~~~~~~~~----~~~~~l~Dt~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (210)
..++-+++ .-.+.++|.||.+ ....-...+-.++|++|+|.++.+..+..+- .+..... ..+
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek--~Ff~~vs----~~K 261 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK--QFFHKVS----EEK 261 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH--HHHHHhh----ccC
Confidence 00111110 1256788999843 3344455667889999999999887543332 3333332 224
Q ss_pred CcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC--------eEEEeccc
Q 028315 120 CVKILVGNKVDRDSERAVTREEGMILAQEHKC--------LFLECSAK 159 (210)
Q Consensus 120 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~sa~ 159 (210)
..++|+.||+|.........+++......+++ .+|++||+
T Consensus 262 pniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 262 PNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred CcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 45678889999876544444444444333322 38999966
No 350
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=3.1e-07 Score=68.00 Aligned_cols=156 Identities=21% Similarity=0.284 Sum_probs=84.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-------CCCce-eeEEEEEEEEE--CCeEEEEEEEeCCCCccc---ccch
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-------PSPTI-GVDFKIKLLTV--GGKRLKLTIWDTAGQERF---GTLT 78 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-------~~~~~-~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~---~~~~ 78 (210)
-.+||.++|.+|.|||||+|.++...... ..|.+ .++.......+ .+-..++.++||||.-.+ ...|
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 46999999999999999999986543222 11111 12222222223 455678889999993221 1222
Q ss_pred h-----------hhh--------------ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 79 S-----------SYY--------------RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 79 ~-----------~~~--------------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
. .|+ ..+++++|.+..+.. ++..+.-.++..+. .-+.++.|+-|.|-..
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt-----~vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLT-----EVVNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHh-----hhheeeeeEeeccccc
Confidence 2 122 246889998887753 22222212222222 2346788888999532
Q ss_pred --CCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHHH
Q 028315 134 --ERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLY 173 (210)
Q Consensus 134 --~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~ 173 (210)
++..-.+.++.-...+++.++.-.+.+...-+..++.-++
T Consensus 199 leEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR 240 (336)
T KOG1547|consen 199 LEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVR 240 (336)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHH
Confidence 1111122333334556777666655554444444444333
No 351
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1.2e-07 Score=78.07 Aligned_cols=140 Identities=15% Similarity=0.139 Sum_probs=86.2
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
..-++++-|+++|+||+||||||+.|...........+....+ .+.+...+++|+++|.+ .. .+.....-+|.
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT----vvsgK~RRiTflEcp~D--l~-~miDvaKIaDL 136 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT----VVSGKTRRITFLECPSD--LH-QMIDVAKIADL 136 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE----EeecceeEEEEEeChHH--HH-HHHhHHHhhhe
Confidence 3346678899999999999999998865543332222211122 34567789999999932 22 22234567999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCCccCHHHHHHH-----H-HHcCCeEEEecccC
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCV-KILVGNKVDRDSERAVTREEGMIL-----A-QEHKCLFLECSAKN 160 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~-----~-~~~~~~~~~~sa~~ 160 (210)
+++++|.+-+-..+.+ .|+.++.. .+.| ++-|+|..|+-....-....-..+ . -..|+.+|.+|...
T Consensus 137 VlLlIdgnfGfEMETm--EFLnil~~----HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 137 VLLLIDGNFGFEMETM--EFLNILIS----HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eEEEeccccCceehHH--HHHHHHhh----cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 9999999876433433 45565553 4445 567889999854322111111111 1 12378899988764
No 352
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.72 E-value=3.1e-08 Score=72.65 Aligned_cols=56 Identities=23% Similarity=0.469 Sum_probs=42.6
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCC--------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCC
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSV--------HDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (210)
..+++++|.+|+|||||+|.+.+... ....+.++++.....+.+.. .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 35899999999999999999987542 12456667777776666653 4688999993
No 353
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=6.8e-08 Score=81.64 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=86.2
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSV---------------HDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF 74 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (210)
.+..-|++++.+..-|||||+..|....- .+...+.|++.....+..-...+.++++|+|||-+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 35667899999999999999999864321 223456677777666666667889999999999999
Q ss_pred ccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCC
Q 028315 75 GTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD 130 (210)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (210)
.+......+-+|++++++|+..+.--+... ..++.. ..+...++|+||+|
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~~-vlrq~~-----~~~~~~~lvinkid 135 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTYA-VLRQAW-----IEGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHHH-HHHHHH-----HccCceEEEEehhh
Confidence 999999999999999999999865433332 111111 23455688999999
No 354
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.70 E-value=7.2e-08 Score=68.53 Aligned_cols=91 Identities=15% Similarity=-0.013 Sum_probs=58.7
Q ss_pred hhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccC
Q 028315 81 YYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKN 160 (210)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 160 (210)
.+.++|++++|+|+.++..... . .+...+.. . ..+.|+++|+||+|+.+...+ ......+...+...++.+||+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~-~-~i~~~l~~-~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC-K-HVEEYLKK-E-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC-H-HHHHHHHh-c-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 4678999999999998743211 1 23333332 1 345899999999999643221 1122222222333368899999
Q ss_pred CcCHHHHHHHHHHHHH
Q 028315 161 TEDVKQCFKDLLYKIL 176 (210)
Q Consensus 161 ~~~i~~l~~~i~~~~~ 176 (210)
+.|++++++.+.+.+.
T Consensus 80 ~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 80 PFGKGSLIQLLRQFSK 95 (157)
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999999876543
No 355
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.70 E-value=4.2e-08 Score=69.60 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=42.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (210)
....+++++|.+|+|||||+|.+.+.......+..+++........+ ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 34688999999999999999999887654444445555555444443 34788899983
No 356
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=3.7e-08 Score=81.41 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=89.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCC-----CC------------CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSV-----HD------------PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (210)
.+.-+|.+.-+-.+||||+-++++...- .+ .....+++..........++++++++|||||-.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 4566889999999999999999753211 11 112335555555555566689999999999999
Q ss_pred cccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC
Q 028315 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER 135 (210)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 135 (210)
|.-.....++-.|++++|+|+..+-.-+... .|+++- ..++|-+..+||+|.....
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~t-V~rQ~~-----ry~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTET-VWRQMK-----RYNVPRICFINKMDRMGAS 172 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHH-HHHHHH-----hcCCCeEEEEehhhhcCCC
Confidence 9988899999999999999999876555555 676654 3688999999999975543
No 357
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=4.6e-07 Score=67.22 Aligned_cols=168 Identities=21% Similarity=0.251 Sum_probs=97.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc-cc--chhhhhccccEEEEE
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF-GT--LTSSYYRGAHGIILV 91 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~--~~~~~~~~~d~~i~v 91 (210)
+|+++|...+|||++-.-.+....+...-....+-....-++.+.-+.+++||.||+-.+ .. -....++.+.+.++|
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifv 108 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFV 108 (347)
T ss_pred eEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEE
Confidence 499999999999996654433332222111111111111234445678999999997544 22 335568999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhh-hccCCCCcEEEEEeCCCCCCC-CccCHH-HHHHH----HHHcC---C--eEEEeccc
Q 028315 92 YDVTRRETFTNLSSVWAKEVEL-YSTNQDCVKILVGNKVDRDSE-RAVTRE-EGMIL----AQEHK---C--LFLECSAK 159 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~-~~~~~~-~~~~~----~~~~~---~--~~~~~sa~ 159 (210)
+|+.+. ..+.+. .+...+.+ +.-++++.+=|.+.|.|...+ -.+..+ ++.+. ....| + .++-+|.
T Consensus 109 IDaQdd-y~eala-~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI- 185 (347)
T KOG3887|consen 109 IDAQDD-YMEALA-RLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI- 185 (347)
T ss_pred EechHH-HHHHHH-HHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee-
Confidence 998764 233333 33333322 233567888899999996432 111111 11111 11112 2 3444444
Q ss_pred CCcCHHHHHHHHHHHHHccchhhhcc
Q 028315 160 NTEDVKQCFKDLLYKILEVPSLLEQG 185 (210)
Q Consensus 160 ~~~~i~~l~~~i~~~~~~~~~~~~~~ 185 (210)
-...|-|.|..+++.+...-+.++..
T Consensus 186 yDHSIfEAFSkvVQkLipqLptLEnl 211 (347)
T KOG3887|consen 186 YDHSIFEAFSKVVQKLIPQLPTLENL 211 (347)
T ss_pred cchHHHHHHHHHHHHHhhhchhHHHH
Confidence 45678888999999888776655543
No 358
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.64 E-value=1e-07 Score=73.79 Aligned_cols=86 Identities=26% Similarity=0.264 Sum_probs=59.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECC---------------eEEEEEEEeCCCC---
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGG---------------KRLKLTIWDTAGQ--- 71 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~l~Dt~G~--- 71 (210)
.+.++++|+|.|++|||||+|.+....... ..|...++-....+.+.. ....++++|++|.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 467899999999999999999998877654 445444444444444321 1357889999882
Q ss_pred ----cccccchhhhhccccEEEEEEeCCC
Q 028315 72 ----ERFGTLTSSYYRGAHGIILVYDVTR 96 (210)
Q Consensus 72 ----~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (210)
+....-.-..++++|+++-|+++..
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 1222223344688999999998874
No 359
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.63 E-value=1.4e-06 Score=65.48 Aligned_cols=87 Identities=17% Similarity=0.035 Sum_probs=54.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhC--CCCCCC----CceeeEEEEEEEEECCeEEEEEEEeCCCCccccc------ch
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISN--SVHDPS----PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT------LT 78 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~ 78 (210)
.+..-|+++|++++|||+|+|++++. .+.... .|.|.-....... .+....+.++||+|...... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhhH
Confidence 34567899999999999999999988 554422 2222222211111 12356899999999543322 11
Q ss_pred hhhhcc--ccEEEEEEeCCCHh
Q 028315 79 SSYYRG--AHGIILVYDVTRRE 98 (210)
Q Consensus 79 ~~~~~~--~d~~i~v~d~~~~~ 98 (210)
...+.. ++++|+..+.....
T Consensus 84 ~~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 84 LFALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHHhCEEEEeccCcccH
Confidence 222333 78888888876543
No 360
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.63 E-value=1.6e-07 Score=74.82 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=55.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CC-CCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCCcc---
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSV-HD-PSPTIGVDFKIKLLTVGGK---------------RLKLTIWDTAGQER--- 73 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~--- 73 (210)
++++++|.|++|||||++.+++... .. .+|.....-....+.+.+. ...+.+.|.||.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999988776 33 3333322333333333332 23678889999432
Q ss_pred ----cccchhhhhccccEEEEEEeCC
Q 028315 74 ----FGTLTSSYYRGAHGIILVYDVT 95 (210)
Q Consensus 74 ----~~~~~~~~~~~~d~~i~v~d~~ 95 (210)
.....-..++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223344578999999999985
No 361
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.62 E-value=1.7e-07 Score=66.50 Aligned_cols=85 Identities=16% Similarity=0.051 Sum_probs=55.8
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHH
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 165 (210)
|++++|+|+.++.+.... +... ......++|+++|+||+|+.+...+ .+....+....+..++.+||++|.|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~---~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~ 74 (155)
T cd01849 1 DVILEVLDARDPLGTRSP---DIER--VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIE 74 (155)
T ss_pred CEEEEEEeccCCccccCH---HHHH--HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChh
Confidence 789999999987654322 1111 1111357899999999998543211 111112333345678999999999999
Q ss_pred HHHHHHHHHHH
Q 028315 166 QCFKDLLYKIL 176 (210)
Q Consensus 166 ~l~~~i~~~~~ 176 (210)
++++.+.+...
T Consensus 75 ~L~~~i~~~~~ 85 (155)
T cd01849 75 KKESAFTKQTN 85 (155)
T ss_pred hHHHHHHHHhH
Confidence 99999877643
No 362
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.5e-07 Score=72.95 Aligned_cols=143 Identities=15% Similarity=0.063 Sum_probs=95.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhC----------CCCC-----CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISN----------SVHD-----PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT 76 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~----------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 76 (210)
+..||.-+|+..-|||||-..+..- .+.+ .....|++.....+.+......+-=.|+|||..|-.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 5789999999999999998876321 1111 123456777777777766666666679999999987
Q ss_pred chhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc---CHHHHHHHHHHcCC--
Q 028315 77 LTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV---TREEGMILAQEHKC-- 151 (210)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~-- 151 (210)
++..-...-|++|+|+.++|..--+.-. .++ +.+.. .-..++|.+||.|+.++.+. -+-+++++...+|+
T Consensus 133 NMItGaaqMDGaILVVaatDG~MPQTrE-HlL--LArQV--GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGPMPQTRE-HLL--LARQV--GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HhhcCccccCceEEEEEcCCCCCcchHH-HHH--HHHHc--CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 7766677889999999999975333222 221 12221 22457888999999854332 22345566666654
Q ss_pred ---eEEEeccc
Q 028315 152 ---LFLECSAK 159 (210)
Q Consensus 152 ---~~~~~sa~ 159 (210)
|++.=||.
T Consensus 208 d~~PvI~GSAL 218 (449)
T KOG0460|consen 208 DNTPVIRGSAL 218 (449)
T ss_pred CCCCeeecchh
Confidence 68876665
No 363
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=3.8e-07 Score=71.67 Aligned_cols=157 Identities=19% Similarity=0.254 Sum_probs=94.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-C-----------------------CCceeeEEEEEEEEE----------C
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-P-----------------------SPTIGVDFKIKLLTV----------G 57 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~-----------------------~~~~~~~~~~~~~~~----------~ 57 (210)
-++|++++|...+|||||+.-|..+.... . ....+.+-.-..+.+ +
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 57999999999999999998875543221 0 011121111111111 2
Q ss_pred CeEEEEEEEeCCCCcccccchhhhhc--cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC
Q 028315 58 GKRLKLTIWDTAGQERFGTLTSSYYR--GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER 135 (210)
Q Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 135 (210)
....-+.|+|++|+..|......-+. ..|.+++|+.+........- ..+.++. -.+.|++|+++|+|+....
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr--EHLgl~~----AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR--EHLGLIA----ALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH--HHHHHHH----HhCCCeEEEEEeeccccch
Confidence 22346789999999998654433333 36899999999877543221 1222222 3588999999999996532
Q ss_pred cc------------------------CHHHHHHHHHH----cCCeEEEecccCCcCHHHHHHHHHHHH
Q 028315 136 AV------------------------TREEGMILAQE----HKCLFLECSAKNTEDVKQCFKDLLYKI 175 (210)
Q Consensus 136 ~~------------------------~~~~~~~~~~~----~~~~~~~~sa~~~~~i~~l~~~i~~~~ 175 (210)
.+ ..+++...+.+ .-.|+|.+|...|+|++- +..++.-+
T Consensus 320 ~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l-l~~fLn~L 386 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL-LRTFLNCL 386 (591)
T ss_pred hHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH-HHHHHhhc
Confidence 11 11222222222 224799999999999876 44444433
No 364
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.52 E-value=4.8e-07 Score=65.24 Aligned_cols=90 Identities=18% Similarity=0.078 Sum_probs=60.1
Q ss_pred chhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEe
Q 028315 77 LTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLEC 156 (210)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
.....+.++|.+++|+|+.++...... .+...+ .+.|+++|+||+|+.+.... ....+.....+..++.+
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~------~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~i 81 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL------GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFV 81 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh------cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence 345567899999999999876542211 122211 35689999999998543211 11112222334568999
Q ss_pred cccCCcCHHHHHHHHHHHHH
Q 028315 157 SAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 157 sa~~~~~i~~l~~~i~~~~~ 176 (210)
||+++.|++++.+.+.+.+.
T Consensus 82 Sa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 82 NAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred ECCCcccHHHHHHHHHHHHH
Confidence 99999999999999888764
No 365
>PRK12288 GTPase RsgA; Reviewed
Probab=98.52 E-value=2.1e-07 Score=74.17 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=37.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCCCCcee-------eEEEEEEEEECCeEEEEEEEeCCCCcccc
Q 028315 16 ILLIGDSGVGKSSILLSLISNSVHDPSPTIG-------VDFKIKLLTVGGKRLKLTIWDTAGQERFG 75 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (210)
++|+|.+|||||||||+|++..........+ +|.....+.+.+.. .++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 6899999999999999998765433222111 23333334444332 478999987764
No 366
>PRK12289 GTPase RsgA; Reviewed
Probab=98.52 E-value=1.9e-07 Score=74.51 Aligned_cols=56 Identities=27% Similarity=0.354 Sum_probs=38.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCCCCcee-------eEEEEEEEEECCeEEEEEEEeCCCCccc
Q 028315 16 ILLIGDSGVGKSSILLSLISNSVHDPSPTIG-------VDFKIKLLTVGGKRLKLTIWDTAGQERF 74 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (210)
++|+|.+|||||||||+|++..........+ +|.....+.+.... .++||||...+
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 7999999999999999998765544333333 44454444554333 57899997544
No 367
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.50 E-value=4.9e-06 Score=68.61 Aligned_cols=99 Identities=13% Similarity=0.154 Sum_probs=63.7
Q ss_pred EEEEEEeCCCC-------------cccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028315 61 LKLTIWDTAGQ-------------ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGN 127 (210)
Q Consensus 61 ~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 127 (210)
.++.+.|+||. +....+.+.++.+.+++|+|+--..-+.... ....++. .....+...|+|++
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERS---nVTDLVs-q~DP~GrRTIfVLT 487 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERS---IVTDLVS-QMDPHGRRTIFVLT 487 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhh---hHHHHHH-hcCCCCCeeEEEEe
Confidence 37889999992 1112345677889999999985443322211 1222222 22256778899999
Q ss_pred CCCCCCCCccCHHHHHHHHHHcCC-----eEEEecccCCcC
Q 028315 128 KVDRDSERAVTREEGMILAQEHKC-----LFLECSAKNTED 163 (210)
Q Consensus 128 K~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~sa~~~~~ 163 (210)
|.|+...+..++..++.+....-+ .||.+-.-.|..
T Consensus 488 KVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGns 528 (980)
T KOG0447|consen 488 KVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNS 528 (980)
T ss_pred ecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCc
Confidence 999988877888888877665433 377766655543
No 368
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.50 E-value=8.8e-08 Score=70.54 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=80.1
Q ss_pred EECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCC----------HhhHHHHHHHHHHHHhhhccCCCCcEEE
Q 028315 55 TVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTR----------RETFTNLSSVWAKEVELYSTNQDCVKIL 124 (210)
Q Consensus 55 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~iv 124 (210)
.++...+.+.+.|.+|+...+.-|...+++.-.+++++.++. ....++....+...+. +....+.++|+
T Consensus 193 pfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~-yPWF~nssVIl 271 (359)
T KOG0085|consen 193 PFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIIT-YPWFQNSSVIL 271 (359)
T ss_pred CcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhc-cccccCCceEE
Confidence 344555677788999998888888888887777776666553 2334444433444333 33357889999
Q ss_pred EEeCCCCCCC----------------CccCHHHHHHHHHHc----C------CeEEEecccCCcCHHHHHHHHHHHHHcc
Q 028315 125 VGNKVDRDSE----------------RAVTREEGMILAQEH----K------CLFLECSAKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 125 v~nK~Dl~~~----------------~~~~~~~~~~~~~~~----~------~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 178 (210)
.+||.|+..+ ..-+.+.+.+|.... + +.-..+.|.+..||.-+|..+...+++.
T Consensus 272 FLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~ 351 (359)
T KOG0085|consen 272 FLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 351 (359)
T ss_pred EechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence 9999998532 122333444444321 2 1246788999999999999988877653
No 369
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.50 E-value=8.9e-06 Score=56.88 Aligned_cols=147 Identities=19% Similarity=0.250 Sum_probs=81.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCC-CC--------------ccc--
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTA-GQ--------------ERF-- 74 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~-G~--------------~~~-- 74 (210)
..+||++.|+||+||||++.++...-.......-| +.+..+.-.+...-|.+.|+. |. ..|
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 46899999999999999999886433222222222 333344455666666666766 21 111
Q ss_pred -----c----cchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHH
Q 028315 75 -----G----TLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMIL 145 (210)
Q Consensus 75 -----~----~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 145 (210)
. ...+..++.+|++ ++|=-.+..+. ...+...++... +.+.|++.++.+.+..+ ..+.
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElk--s~~f~~~ve~vl-~~~kpliatlHrrsr~P-------~v~~- 148 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVI--IIDEIGPMELK--SKKFREAVEEVL-KSGKPLIATLHRRSRHP-------LVQR- 148 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhc--cHHHHHHHHHHh-cCCCcEEEEEecccCCh-------HHHH-
Confidence 1 1112233456655 45666554332 224556665555 57788888887775311 1222
Q ss_pred HHHcCCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 146 AQEHKCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 146 ~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
....+..++. .+..|=+.++..+...+-
T Consensus 149 ik~~~~v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 149 IKKLGGVYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred hhhcCCEEEE---EccchhhHHHHHHHHHhc
Confidence 2333333333 455566678887777654
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.48 E-value=2.9e-06 Score=66.98 Aligned_cols=141 Identities=22% Similarity=0.220 Sum_probs=78.6
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-------CCCc---------------eeeEEEEEEEEE-------------C
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-------PSPT---------------IGVDFKIKLLTV-------------G 57 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-------~~~~---------------~~~~~~~~~~~~-------------~ 57 (210)
.-.++++|++|+||||++..+....... ..++ .+..+....... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999875321110 0010 011111100000 1
Q ss_pred CeEEEEEEEeCCCCcccccc----hhhhh--------ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEE
Q 028315 58 GKRLKLTIWDTAGQERFGTL----TSSYY--------RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILV 125 (210)
Q Consensus 58 ~~~~~~~l~Dt~G~~~~~~~----~~~~~--------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 125 (210)
...+.+.++||||....... ...+. ...+..++|+|++... ..+. ....... .-.+.-+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~-~a~~f~~-----~~~~~giI 265 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALS-QAKAFHE-----AVGLTGII 265 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHH-HHHHHHh-----hCCCCEEE
Confidence 23467899999996443221 11111 2467889999999653 2222 1112111 11244688
Q ss_pred EeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 126 GNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 126 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
+||.|...... .+.......+.|+..++ +|.+++++
T Consensus 266 lTKlD~t~~~G----~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 266 LTKLDGTAKGG----VVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred EECCCCCCCcc----HHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 99999643221 34455566789988888 67777765
No 371
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.45 E-value=1.4e-06 Score=67.30 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=56.7
Q ss_pred eEEEEEEEeCCCCcccccch----hhh---h-----ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEE
Q 028315 59 KRLKLTIWDTAGQERFGTLT----SSY---Y-----RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVG 126 (210)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~----~~~---~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (210)
.++.+.++||||....+... ..+ . ..+|.+++|+|++... +.+. ........ . .+.-+|+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~----~-~~~g~Il 224 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEA----V-GLTGIIL 224 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhh----C-CCCEEEE
Confidence 34688999999965433221 111 1 1389999999998543 2222 22222211 1 1457889
Q ss_pred eCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHH
Q 028315 127 NKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 127 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
||.|...... .+..+....+.|+.+++ +|.+++++-
T Consensus 225 TKlDe~~~~G----~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 225 TKLDGTAKGG----IILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred EccCCCCCcc----HHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 9999754322 23444556688988887 667677653
No 372
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.45 E-value=8.3e-06 Score=65.54 Aligned_cols=155 Identities=19% Similarity=0.286 Sum_probs=89.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC---------------CCCceeeEEEEE----------EEEE-CCeEEEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD---------------PSPTIGVDFKIK----------LLTV-GGKRLKLTIW 66 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~---------------~~~~~~~~~~~~----------~~~~-~~~~~~~~l~ 66 (210)
.+=|+++|+..+||||||.||.....-+ .....|.+..+. .+.+ ++-.+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 3668999999999999999996432111 111112222111 2233 4667889999
Q ss_pred eCCC--------Cc-----------ccccchh---hh-------h--ccccEEEEEEeCC----CHhhHHHHHHHHHHHH
Q 028315 67 DTAG--------QE-----------RFGTLTS---SY-------Y--RGAHGIILVYDVT----RRETFTNLSSVWAKEV 111 (210)
Q Consensus 67 Dt~G--------~~-----------~~~~~~~---~~-------~--~~~d~~i~v~d~~----~~~~~~~~~~~~~~~~ 111 (210)
|+-| +. .|..... +. + +..=++++--|.+ .++.+..+.+.....|
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 9988 11 1110000 00 0 1122444444444 2445555555555555
Q ss_pred hhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccC--CcCHHHHHHHHHH
Q 028315 112 ELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKN--TEDVKQCFKDLLY 173 (210)
Q Consensus 112 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~--~~~i~~l~~~i~~ 173 (210)
. .-++|++|++|-.+.. .....+.+..+..+++++++.+++.. ...|..++..++-
T Consensus 177 k----~igKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 177 K----EIGKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLY 234 (492)
T ss_pred H----HhCCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHh
Confidence 5 4678999999998743 33455677788889999988887763 3455555544443
No 373
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=9.3e-08 Score=73.12 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=94.9
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC------CCCceee------------------EEEEEE---------EE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD------PSPTIGV------------------DFKIKL---------LT 55 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~------~~~~~~~------------------~~~~~~---------~~ 55 (210)
+++-++||.-+|+..-||||++..+.+-.-.. ..-|+.. ..+... ..
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence 34568999999999999999999875421100 0000000 000000 00
Q ss_pred ECCe------EEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCH----hhHHHHHHHHHHHHhhhccCCCCcEEEE
Q 028315 56 VGGK------RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR----ETFTNLSSVWAKEVELYSTNQDCVKILV 125 (210)
Q Consensus 56 ~~~~------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~ivv 125 (210)
..+. -..+.|.|+|||+..-..+-.-..-.|++++++..+.. ++-+.+. .++.. .=+.++++
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLa-----aveiM---~Lkhiiil 185 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLA-----AVEIM---KLKHIIIL 185 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHH-----HHHHh---hhceEEEE
Confidence 0000 13567889999976533332222334788888877753 2323222 22221 12357888
Q ss_pred EeCCCCCCCCccC--HHHHHHHHHH---cCCeEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 126 GNKVDRDSERAVT--REEGMILAQE---HKCLFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 126 ~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
-||+|+..++... .++++.|... .++|++.+||.-..|++-+.+.|++.+.-
T Consensus 186 QNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 186 QNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred echhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 8999997654332 2334445443 36789999999999999999998887754
No 374
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.44 E-value=8.9e-07 Score=61.75 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=51.6
Q ss_pred hhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecc
Q 028315 79 SSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSA 158 (210)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa 158 (210)
...+..+|++++|+|+.++.+.... .+...+... ..++|+++|+||+|+.+... ..+........+..++.+||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~--~l~~~l~~~--~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPP--DLERYVKEV--DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCH--HHHHHHHhc--cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 3457889999999999987654321 223333221 14689999999999854322 12223334455678999999
Q ss_pred cCCcC
Q 028315 159 KNTED 163 (210)
Q Consensus 159 ~~~~~ 163 (210)
.++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98753
No 375
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.42 E-value=1.2e-06 Score=68.04 Aligned_cols=92 Identities=17% Similarity=0.068 Sum_probs=62.2
Q ss_pred chhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEe
Q 028315 77 LTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLEC 156 (210)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
.....+..+|++++|+|+..+.+.... .+...+ .+.|+++|+||+|+.+.... ..........+.+++.+
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l------~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~i 83 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR------GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAI 83 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH------CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEE
Confidence 345567899999999999877543321 122222 25799999999998543211 11111222346679999
Q ss_pred cccCCcCHHHHHHHHHHHHHcc
Q 028315 157 SAKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 157 sa~~~~~i~~l~~~i~~~~~~~ 178 (210)
||+++.|++++.+.+.+.+.+.
T Consensus 84 Sa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 84 NAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred ECCCcccHHHHHHHHHHHHHHh
Confidence 9999999999999988877543
No 376
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.42 E-value=2.5e-06 Score=78.24 Aligned_cols=112 Identities=15% Similarity=0.122 Sum_probs=65.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCCC-------CceeeEEEEEEEEECCeEEEEEEEeCCCC----c----ccccchhh
Q 028315 16 ILLIGDSGVGKSSILLSLISNSVHDPS-------PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ----E----RFGTLTSS 80 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----~----~~~~~~~~ 80 (210)
.+|+|++|+||||++.+- +..++-.. ...+.+..+ .+.+.+ .-+++||+|. + .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c-~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNC-DWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCccc-ceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 489999999999999987 43332211 111222221 222333 3458899992 1 22345666
Q ss_pred hhc---------cccEEEEEEeCCCHh-----hHHHHHHHHHHH---HhhhccCCCCcEEEEEeCCCCCC
Q 028315 81 YYR---------GAHGIILVYDVTRRE-----TFTNLSSVWAKE---VELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 81 ~~~---------~~d~~i~v~d~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
++. -.++||+++|+.+-. ........++.. +.... ....||+|++||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhhc
Confidence 542 379999999988532 111111123222 33222 46899999999999864
No 377
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.42 E-value=5.7e-07 Score=68.56 Aligned_cols=57 Identities=30% Similarity=0.391 Sum_probs=36.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCc-------eeeEEEEEEEEECCeEEEEEEEeCCCCcccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPT-------IGVDFKIKLLTVGGKRLKLTIWDTAGQERFG 75 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (210)
.++++|.+|||||||+|++.+......... ..+|.....+.+.+ -.++||||...+.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~ 185 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG 185 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence 678999999999999999987643331111 11333333344432 2678999976543
No 378
>PRK14974 cell division protein FtsY; Provisional
Probab=98.40 E-value=4.2e-07 Score=72.00 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=55.6
Q ss_pred EEEEEEeCCCCccccc-c---hhhhh--ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028315 61 LKLTIWDTAGQERFGT-L---TSSYY--RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE 134 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~-~---~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 134 (210)
+.+.++||+|...... + ...+. ...|.+++|+|+............|... -.+--+|+||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~--------~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA--------VGIDGVILTKVDADAK 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc--------CCCCEEEEeeecCCCC
Confidence 5689999999654321 1 12222 2578999999998654322111122111 1134678999997543
Q ss_pred CccCHHHHHHHHHHcCCeEEEecccCCcCHHHHH
Q 028315 135 RAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
-. -+..+....+.|+.+++ +|.+++++.
T Consensus 295 ~G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 GG----AALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred cc----HHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 22 23344555688888887 688887754
No 379
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.40 E-value=3.4e-07 Score=74.54 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=49.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCC
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (210)
.+.|+++|.|||||||+||.|.+.+...++.|+|-|.+..++.++. .+-|.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 6999999999999999999999999999999999998888877764 4677899994
No 380
>PRK13796 GTPase YqeH; Provisional
Probab=98.40 E-value=1.8e-06 Score=69.56 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=61.3
Q ss_pred ccccchhhhhcccc-EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHH----HHH
Q 028315 73 RFGTLTSSYYRGAH-GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMI----LAQ 147 (210)
Q Consensus 73 ~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~ 147 (210)
.|...... +...+ .+++|+|+.+... .|...+.... .+.|+++|+||+|+.+. ....++... +..
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~~------s~~~~L~~~~--~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k 127 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFNG------SWIPGLHRFV--GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAK 127 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCCC------chhHHHHHHh--CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHH
Confidence 34443333 34445 9999999987542 3445554443 36789999999999653 333333332 344
Q ss_pred HcCC---eEEEecccCCcCHHHHHHHHHHH
Q 028315 148 EHKC---LFLECSAKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 148 ~~~~---~~~~~sa~~~~~i~~l~~~i~~~ 174 (210)
..++ .++.+||+++.|++++++.+.+.
T Consensus 128 ~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 128 ELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred hcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4565 58999999999999999998765
No 381
>PRK13796 GTPase YqeH; Provisional
Probab=98.39 E-value=5.5e-07 Score=72.58 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=42.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC----C-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCCc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSV----H-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (210)
.++.++|.+|||||||+|+|+.... . ..++.+|+|.....+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 4789999999999999999986431 1 15667777777777666543 3688999963
No 382
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.38 E-value=9e-07 Score=71.24 Aligned_cols=56 Identities=23% Similarity=0.401 Sum_probs=41.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSV-----HDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (210)
.++.++|.+|||||||+|+++.... ...++.+++|.....+.++.. +.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence 4799999999999999999987542 235566777777666655332 4688999954
No 383
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.37 E-value=4.5e-07 Score=64.08 Aligned_cols=57 Identities=30% Similarity=0.401 Sum_probs=32.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC---CC----CceeeEEEEEEEEECCeEEEEEEEeCCCCccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD---PS----PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF 74 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (210)
.++++|++|||||||+|.|....... .+ .-.-++.....+.++... .++||||...+
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~ 100 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF 100 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence 57899999999999999998764222 11 111222233334444333 56799996554
No 384
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.36 E-value=2.3e-06 Score=60.81 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028315 16 ILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~ 36 (210)
++++|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578999999999999998765
No 385
>PRK01889 GTPase RsgA; Reviewed
Probab=98.30 E-value=3.2e-06 Score=67.95 Aligned_cols=83 Identities=12% Similarity=0.056 Sum_probs=56.8
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH-HcCCeEEEecccC
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ-EHKCLFLECSAKN 160 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~ 160 (210)
..++|.+++|+++..+-....+. .++.... ..+++.+||+||+||.+... +....+.. ..+.+++.+|+++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ld-r~L~~a~----~~~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~ 181 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIE-RYLALAW----ESGAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALD 181 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHH-HHHHHHH----HcCCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCC
Confidence 57899999999997443333333 5555544 35677799999999965311 11122222 4577899999999
Q ss_pred CcCHHHHHHHHH
Q 028315 161 TEDVKQCFKDLL 172 (210)
Q Consensus 161 ~~~i~~l~~~i~ 172 (210)
+.|++++..++.
T Consensus 182 g~gl~~L~~~L~ 193 (356)
T PRK01889 182 GEGLDVLAAWLS 193 (356)
T ss_pred CccHHHHHHHhh
Confidence 999999888764
No 386
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.28 E-value=3.6e-06 Score=65.74 Aligned_cols=92 Identities=18% Similarity=0.102 Sum_probs=62.0
Q ss_pred chhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEe
Q 028315 77 LTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLEC 156 (210)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
.....+..+|++++|+|+.++.+.+.. .+...+ .+.|+++|+||+|+.+.... +.........+.+++.+
T Consensus 17 ~l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~------~~kp~iiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~v 86 (287)
T PRK09563 17 EIKENLKLVDVVIEVLDARIPLSSENP--MIDKII------GNKPRLLILNKSDLADPEVT--KKWIEYFEEQGIKALAI 86 (287)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh------CCCCEEEEEEchhcCCHHHH--HHHHHHHHHcCCeEEEE
Confidence 344567899999999999877543321 122222 26799999999998543111 11112223346778999
Q ss_pred cccCCcCHHHHHHHHHHHHHcc
Q 028315 157 SAKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 157 sa~~~~~i~~l~~~i~~~~~~~ 178 (210)
||+++.|++++.+.+.+.+.+.
T Consensus 87 Sa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 87 NAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred ECCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999888876543
No 387
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.28 E-value=5.7e-06 Score=59.35 Aligned_cols=135 Identities=21% Similarity=0.307 Sum_probs=67.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeC-CCC----------------------
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDT-AGQ---------------------- 71 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~---------------------- 71 (210)
||++.|++|+|||||+.++.........+..| +.+..+.-.+..+-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~ 78 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL 78 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence 68999999999999999986544222222222 22233333444555555555 220
Q ss_pred ccccc----chhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCC-CCCCCCccCHHHHHHHH
Q 028315 72 ERFGT----LTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKV-DRDSERAVTREEGMILA 146 (210)
Q Consensus 72 ~~~~~----~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~~ 146 (210)
+.|.. .....+..+| ++|+|=-.+..+. ...|.+.+.... ..++|++.++.+. +. .....+.
T Consensus 79 e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~--~~~F~~~v~~~l-~s~~~vi~vv~~~~~~--------~~l~~i~ 145 (168)
T PF03266_consen 79 ESFEEIGLPALRNALSSSD--LIVIDEIGKMELK--SPGFREAVEKLL-DSNKPVIGVVHKRSDN--------PFLEEIK 145 (168)
T ss_dssp HHHHCCCCCCCHHHHHCCH--EEEE---STTCCC---CHHHHHHHHHH-CTTSEEEEE--SS--S--------CCHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc--CHHHHHHHHHHH-cCCCcEEEEEecCCCc--------HHHHHHH
Confidence 11111 1122223455 7778865543221 113445554444 3678888888766 32 1234566
Q ss_pred HHcCCeEEEecccCCcCH
Q 028315 147 QEHKCLFLECSAKNTEDV 164 (210)
Q Consensus 147 ~~~~~~~~~~sa~~~~~i 164 (210)
...++.+++++..+...+
T Consensus 146 ~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTTSEEEE--TTTCCCH
T ss_pred hCCCcEEEEeChhHHhhH
Confidence 667788998877765443
No 388
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.26 E-value=1e-05 Score=66.04 Aligned_cols=133 Identities=15% Similarity=0.158 Sum_probs=69.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhC----CCCC---CCC---------------ceeeEEEEEEEEEC-------------
Q 028315 13 SFKILLIGDSGVGKSSILLSLISN----SVHD---PSP---------------TIGVDFKIKLLTVG------------- 57 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~----~~~~---~~~---------------~~~~~~~~~~~~~~------------- 57 (210)
+--|+++|.+|+||||++.+|... .... ... ..+..+.......+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 467899999999999999988421 1110 010 01111111000001
Q ss_pred CeEEEEEEEeCCCCccccc-chh---hh--hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028315 58 GKRLKLTIWDTAGQERFGT-LTS---SY--YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131 (210)
Q Consensus 58 ~~~~~~~l~Dt~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 131 (210)
...+.+.|+||||...... +.. .+ ....|-+++|+|+..++...+....|.. .-.+.-+|+||.|.
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~--------~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD--------SVDVGSVIITKLDG 251 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh--------ccCCcEEEEECccC
Confidence 1246889999999543321 111 11 2356889999999865433222212221 12255788999997
Q ss_pred CCCCccCHHHHHHHHHHcCCeEEEec
Q 028315 132 DSERAVTREEGMILAQEHKCLFLECS 157 (210)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~s 157 (210)
..... .+.......+.|+.+++
T Consensus 252 ~argG----~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 252 HAKGG----GALSAVAATKSPIIFIG 273 (429)
T ss_pred CCCcc----HHhhhHHHHCCCeEEEc
Confidence 43211 12333444555654444
No 389
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.23 E-value=5.8e-06 Score=62.20 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=76.1
Q ss_pred eEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCH----------hhHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028315 59 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR----------ETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128 (210)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (210)
..+.++++|.+|+...+.-|...+....++|+|+..+.. ..+++....+.. +........+.+|+.+||
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFks-iWnNRwL~tisvIlFLNK 278 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKS-IWNNRWLRTISVILFLNK 278 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHH-HHhhhHHhhhheeEEecH
Confidence 356799999999999999999999999999999988752 223333322222 222222356789999999
Q ss_pred CCCCC----------------------------CCccCHH--HHHHHHHH-------------cCCeEEEecccCCcCHH
Q 028315 129 VDRDS----------------------------ERAVTRE--EGMILAQE-------------HKCLFLECSAKNTEDVK 165 (210)
Q Consensus 129 ~Dl~~----------------------------~~~~~~~--~~~~~~~~-------------~~~~~~~~sa~~~~~i~ 165 (210)
.|+.. +...++. .+..+... +-+.+.++.|.+.++|.
T Consensus 279 qDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIr 358 (379)
T KOG0099|consen 279 QDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIR 358 (379)
T ss_pred HHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHH
Confidence 99731 0111111 11111110 11336788899999999
Q ss_pred HHHHHHHHHHHc
Q 028315 166 QCFKDLLYKILE 177 (210)
Q Consensus 166 ~l~~~i~~~~~~ 177 (210)
.+|......+..
T Consensus 359 rVFnDcrdiIqr 370 (379)
T KOG0099|consen 359 RVFNDCRDIIQR 370 (379)
T ss_pred HHHHHHHHHHHH
Confidence 999987666553
No 390
>PRK00098 GTPase RsgA; Reviewed
Probab=98.22 E-value=3.2e-06 Score=66.38 Aligned_cols=57 Identities=28% Similarity=0.377 Sum_probs=36.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcee-------eEEEEEEEEECCeEEEEEEEeCCCCccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIG-------VDFKIKLLTVGGKRLKLTIWDTAGQERF 74 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (210)
.++++|.+|+|||||+|.+++........... ++.....+.+... ..++||||...+
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~ 229 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSF 229 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCcc
Confidence 57999999999999999998765433221111 2233333334332 267899997643
No 391
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.21 E-value=3.6e-06 Score=65.70 Aligned_cols=59 Identities=27% Similarity=0.404 Sum_probs=38.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCC-------CceeeEEEEEEEEECCeEEEEEEEeCCCCcccc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPS-------PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG 75 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (210)
-.++++|++|+|||||+|.+++....... ....++.....+...... .++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence 46899999999999999999876543311 111233333334443222 578999987653
No 392
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=1e-06 Score=69.81 Aligned_cols=157 Identities=17% Similarity=0.122 Sum_probs=95.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCC------------------C------C------CCceeeEEEEEEEEECCeE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVH------------------D------P------SPTIGVDFKIKLLTVGGKR 60 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~------------------~------~------~~~~~~~~~~~~~~~~~~~ 60 (210)
-..+|++|+|+..+||||+-..++...-. + + ...-+.+.......+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 35799999999999999987765321100 0 0 1112334444444555556
Q ss_pred EEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHh---hHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc
Q 028315 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRE---TFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV 137 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 137 (210)
.++.+.|+|||..|...+-.-..++|..++|+++...+ .|+.--+.--..+.... ..-...|+++||+|-+.. ..
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vNKMddPtv-nW 234 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTV-NW 234 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEEeccCCcc-Cc
Confidence 78999999999999887777788899999999986432 12211100011111111 133467889999996432 12
Q ss_pred CHH-------HHHHHHHHcC------CeEEEecccCCcCHHHHHH
Q 028315 138 TRE-------EGMILAQEHK------CLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 138 ~~~-------~~~~~~~~~~------~~~~~~sa~~~~~i~~l~~ 169 (210)
+.+ ....+....| ..++.+|..+|.++.+..+
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 211 1222233222 3489999999999988664
No 393
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.14 E-value=5.6e-05 Score=59.73 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=54.5
Q ss_pred EEEEEEeCCCCcccccchhhhhc--------cccEEEEEEeCCCHhhHHH-HHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028315 61 LKLTIWDTAGQERFGTLTSSYYR--------GAHGIILVYDVTRRETFTN-LSSVWAKEVELYSTNQDCVKILVGNKVDR 131 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 131 (210)
....+++|.|...-......+.. ..|+++-|+|+..-..... ..+.+...+. . .=+|++||.|+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia----~---AD~ivlNK~Dl 157 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA----F---ADVIVLNKTDL 157 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH----h---CcEEEEecccC
Confidence 56778888885444333333322 3588999999876543222 2222222222 1 23889999999
Q ss_pred CCCCccCHHHHHHHHHH--cCCeEEEecccCCcCHHHHH
Q 028315 132 DSERAVTREEGMILAQE--HKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 132 ~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i~~l~ 168 (210)
.++..+ +..+..... ..++++.++.. +....+++
T Consensus 158 v~~~~l--~~l~~~l~~lnp~A~i~~~~~~-~~~~~~ll 193 (323)
T COG0523 158 VDAEEL--EALEARLRKLNPRARIIETSYG-DVDLAELL 193 (323)
T ss_pred CCHHHH--HHHHHHHHHhCCCCeEEEcccc-CCCHHHhh
Confidence 876542 222333333 35678888873 33433333
No 394
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=4.7e-05 Score=61.21 Aligned_cols=144 Identities=15% Similarity=0.100 Sum_probs=73.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEE------------------EEEE-----------CCeE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIK------------------LLTV-----------GGKR 60 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~------------------~~~~-----------~~~~ 60 (210)
..-.++|+|++|+||||++.+|....... .....-.+.... ...+ ...+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34578899999999999999986532111 000000000000 0001 1124
Q ss_pred EEEEEEeCCCCcccccchhh---hhc---cccEEEEEEeCCCH-hhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 61 LKLTIWDTAGQERFGTLTSS---YYR---GAHGIILVYDVTRR-ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~---~~~---~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
..+.++||+|....+..... .+. ...-.++|++++.. .....+...|............-+-=+|+||.|...
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 57899999996544332211 122 23456889998864 333433323333221100000012357789999743
Q ss_pred CCccCHHHHHHHHHHcCCeEEEeccc
Q 028315 134 ERAVTREEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~sa~ 159 (210)
. .=.+..+....+.|+.+++.-
T Consensus 296 ~----~G~~l~~~~~~~lPi~yvt~G 317 (374)
T PRK14722 296 N----LGGVLDTVIRYKLPVHYVSTG 317 (374)
T ss_pred C----ccHHHHHHHHHCcCeEEEecC
Confidence 2 223455566667776665543
No 395
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.11 E-value=6.7e-06 Score=63.51 Aligned_cols=58 Identities=29% Similarity=0.430 Sum_probs=36.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC---CC----CceeeEEEEEEEEECCeEEEEEEEeCCCCcccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD---PS----PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG 75 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (210)
..+++|.+|||||||+|+|....... .+ .-.-+|....-+.+++.+ .++||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 46889999999999999997643222 11 122233444445555443 456999987664
No 396
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.11 E-value=3.5e-06 Score=66.81 Aligned_cols=60 Identities=25% Similarity=0.366 Sum_probs=51.1
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCC
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (210)
...+.++++|+|.|++||||+||+|.........+++|.+.....+..+. .+.|+|.||.
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccC---CceeccCCce
Confidence 34578999999999999999999999999888888888888877777764 4677899993
No 397
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.07 E-value=3.4e-05 Score=59.72 Aligned_cols=94 Identities=19% Similarity=0.106 Sum_probs=67.5
Q ss_pred cchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEE
Q 028315 76 TLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLE 155 (210)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
.+.+.-+.+.|-+++|+.+.+|+--....+.++-..+ ..++..+|++||+|+.+......++........|.+++.
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae----~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~ 146 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE----AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLF 146 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH----HcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEE
Confidence 3444445668888999999988643444435555554 366777888999999876544434556667778999999
Q ss_pred ecccCCcCHHHHHHHHHH
Q 028315 156 CSAKNTEDVKQCFKDLLY 173 (210)
Q Consensus 156 ~sa~~~~~i~~l~~~i~~ 173 (210)
+|++++.+++++...+..
T Consensus 147 ~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 147 VSAKNGDGLEELAELLAG 164 (301)
T ss_pred ecCcCcccHHHHHHHhcC
Confidence 999999999997776544
No 398
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.00 E-value=3.2e-05 Score=54.32 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=36.9
Q ss_pred EEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCC
Q 028315 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD 130 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (210)
.+.+.|+||+|.... ...++..+|-++++....-.+.+.-+. ...+ ...-++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~-------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK---AGIM-------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh---hhHh-------hhcCEEEEeCCC
Confidence 468899999885422 234788899999999877333222111 1222 223488899987
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.99 E-value=3.7e-05 Score=55.40 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=45.2
Q ss_pred EEEEEEEeCCCCccccc----chhhhh--ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 60 RLKLTIWDTAGQERFGT----LTSSYY--RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
...+.++|+||...+.. ....+. ...+.+++|+|........ . . ...+.... + ..-+|.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~--~-~-~~~~~~~~---~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV--N-Q-AKAFNEAL---G-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH--H-H-HHHHHhhC---C-CCEEEEECCcCCC
Confidence 45678899999743321 112222 3489999999987654322 1 2 22222111 2 3467789999754
Q ss_pred CCccCHHHHHHHHHHcCCeEEE
Q 028315 134 ERAVTREEGMILAQEHKCLFLE 155 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
... .........+.|+..
T Consensus 154 ~~g----~~~~~~~~~~~p~~~ 171 (173)
T cd03115 154 RGG----AALSIRAVTGKPIKF 171 (173)
T ss_pred Ccc----hhhhhHHHHCcCeEe
Confidence 321 223355556666443
No 400
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=9.6e-05 Score=61.72 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=69.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCC------C---CCCc---------------eeeEEEEEEEE------E-CCeE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVH------D---PSPT---------------IGVDFKIKLLT------V-GGKR 60 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~------~---~~~~---------------~~~~~~~~~~~------~-~~~~ 60 (210)
..-.|+|+|++|+||||++..|...... . ...+ .+..+....-. + ....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 3457899999999999999887542110 0 1110 01111100000 0 1124
Q ss_pred EEEEEEeCCCCcccccchhh---hhc--cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC
Q 028315 61 LKLTIWDTAGQERFGTLTSS---YYR--GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER 135 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 135 (210)
+.++|+||+|.......... .+. .....++|++.+.. ...+. ..+..+. ...+.-+|+||.|....
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~----eii~~f~--~~~~~gvILTKlDEt~~- 499 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLD----EVVRRFA--HAKPQGVVLTKLDETGR- 499 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHH----HHHHHHH--hhCCeEEEEecCcCccc-
Confidence 68899999996433221110 111 12345677776643 23222 2222222 12356789999997332
Q ss_pred ccCHHHHHHHHHHcCCeEEEeccc
Q 028315 136 AVTREEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~sa~ 159 (210)
.-.........+.++.+++.-
T Consensus 500 ---lG~aLsv~~~~~LPI~yvt~G 520 (559)
T PRK12727 500 ---FGSALSVVVDHQMPITWVTDG 520 (559)
T ss_pred ---hhHHHHHHHHhCCCEEEEeCC
Confidence 234555566677777666543
No 401
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=2.1e-05 Score=59.77 Aligned_cols=115 Identities=26% Similarity=0.394 Sum_probs=69.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCC-----CCceeeEEEEEEEEECCeEEEEEEEeCCCC-------cccccc--
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDP-----SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ-------ERFGTL-- 77 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~~~~~-- 77 (210)
-.+||+-+|.+|.|||||+..|++..+... .|.......++...-.+-.+.+.+.||.|. +.|..+
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 479999999999999999999998887552 233333333333333566788999999991 122111
Q ss_pred -----hhhhh---------------ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 78 -----TSSYY---------------RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 78 -----~~~~~---------------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
...|+ ...++++|.+..+.. ++..+.-.....+ ...+.+|.|+-|.|..
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~L-----dskVNIIPvIAKaDti 189 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKL-----DSKVNIIPVIAKADTI 189 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHH-----hhhhhhHHHHHHhhhh
Confidence 11111 246888888887753 3333331111222 2455667777788753
No 402
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.94 E-value=2.6e-06 Score=67.54 Aligned_cols=81 Identities=25% Similarity=0.278 Sum_probs=56.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc--ccchhhhhccccEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF--GTLTSSYYRGAHGII 89 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~~~~~~~d~~i 89 (210)
..|-|+|+|.|++||||+||.|.........|.+|.+.....+... .++-++|+||.--- .+.....+ -+++
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm---krIfLIDcPGvVyps~dset~ivL---kGvV 379 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM---KRIFLIDCPGVVYPSSDSETDIVL---KGVV 379 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH---hceeEecCCCccCCCCCchHHHHh---hcee
Confidence 4689999999999999999999998888888888876553332222 36788999994211 22222222 3566
Q ss_pred EEEeCCCHh
Q 028315 90 LVYDVTRRE 98 (210)
Q Consensus 90 ~v~d~~~~~ 98 (210)
-|=.+.+++
T Consensus 380 RVenv~~pe 388 (572)
T KOG2423|consen 380 RVENVKNPE 388 (572)
T ss_pred eeeecCCHH
Confidence 666666654
No 403
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=9.1e-05 Score=59.75 Aligned_cols=134 Identities=17% Similarity=0.155 Sum_probs=70.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-------CC---------------CceeeEEEEEEE--E----E---C-CeE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-------PS---------------PTIGVDFKIKLL--T----V---G-GKR 60 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-------~~---------------~~~~~~~~~~~~--~----~---~-~~~ 60 (210)
.-+|+++|++|+||||++..|....... .. ...+..+....- . + . ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3578999999999999999985321100 00 001111110000 0 0 0 113
Q ss_pred EEEEEEeCCCCccccc----chhhhh--ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028315 61 LKLTIWDTAGQERFGT----LTSSYY--RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE 134 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 134 (210)
+.+.|+||+|...... .+..++ ...+.+++|+|++... +.+. .+...+.. -..-=+|+||.|....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~-~i~~~F~~-----~~idglI~TKLDET~k 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMI-EIITNFKD-----IHIDGIVFTKFDETAS 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHH-HHHHHhcC-----CCCCEEEEEcccCCCC
Confidence 5789999999644321 122222 2357789999986432 1222 12222221 1123578999997543
Q ss_pred CccCHHHHHHHHHHcCCeEEEecc
Q 028315 135 RAVTREEGMILAQEHKCLFLECSA 158 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~sa 158 (210)
.. .+..+....+.|+..++.
T Consensus 393 ~G----~iLni~~~~~lPIsyit~ 412 (436)
T PRK11889 393 SG----ELLKIPAVSSAPIVLMTD 412 (436)
T ss_pred cc----HHHHHHHHHCcCEEEEeC
Confidence 22 344556667777666543
No 404
>PRK13695 putative NTPase; Provisional
Probab=97.93 E-value=0.00061 Score=49.16 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=44.1
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCC
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNT 161 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 161 (210)
+..+++ +++|=-.+ .+.....+...+.... ..+.|++++.+|.... .....+....+..++++ +.
T Consensus 94 l~~~~~--lllDE~~~--~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~-------~~~~~i~~~~~~~i~~~---~~ 158 (174)
T PRK13695 94 LEEADV--IIIDEIGK--MELKSPKFVKAVEEVL-DSEKPVIATLHRRSVH-------PFVQEIKSRPGGRVYEL---TP 158 (174)
T ss_pred cCCCCE--EEEECCCc--chhhhHHHHHHHHHHH-hCCCeEEEEECchhhH-------HHHHHHhccCCcEEEEE---cc
Confidence 345565 67883211 1111223444444444 4578999999885321 12334455556667777 45
Q ss_pred cCHHHHHHHHHHHH
Q 028315 162 EDVKQCFKDLLYKI 175 (210)
Q Consensus 162 ~~i~~l~~~i~~~~ 175 (210)
+|=+++.+.+.+++
T Consensus 159 ~~r~~~~~~~~~~~ 172 (174)
T PRK13695 159 ENRDSLPFEILNRL 172 (174)
T ss_pred hhhhhHHHHHHHHH
Confidence 56678888877765
No 405
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=2.6e-05 Score=70.52 Aligned_cols=111 Identities=23% Similarity=0.187 Sum_probs=63.2
Q ss_pred EEEcCCCCcHHHHHHHHhhCCCCCC-------CCceeeEEEEEEEEECCeEEEEEEEeCCC----C----cccccchhhh
Q 028315 17 LLIGDSGVGKSSILLSLISNSVHDP-------SPTIGVDFKIKLLTVGGKRLKLTIWDTAG----Q----ERFGTLTSSY 81 (210)
Q Consensus 17 ~i~G~~~~GKSsli~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~----~~~~~~~~~~ 81 (210)
+|+|++|+||||++..- +..|+-. ...++ |.++. ..+.+ .-+++||.| + +.....|..+
T Consensus 129 ~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cd-wwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 129 MVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCD-WWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred EEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccC-ccccc---ceEEEcCCcceecccCcchhhHHHHHHH
Confidence 68899999999988754 3333221 11112 22222 22333 346779998 2 1334556555
Q ss_pred h---------ccccEEEEEEeCCCHh-----hHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCC
Q 028315 82 Y---------RGAHGIILVYDVTRRE-----TFTNLSSVWAKEVELYST--NQDCVKILVGNKVDRDS 133 (210)
Q Consensus 82 ~---------~~~d~~i~v~d~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~ 133 (210)
+ +-.++||+.+|+.+-- .-.+....++..+..... ....||+|++||.|+.+
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 3 3579999999988521 111111122232222211 46789999999999865
No 406
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.91 E-value=1.2e-05 Score=61.92 Aligned_cols=60 Identities=22% Similarity=0.378 Sum_probs=42.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCC-----CCCCCCceeeEEEEEE-EEECCeEEEEEEEeCCCC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNS-----VHDPSPTIGVDFKIKL-LTVGGKRLKLTIWDTAGQ 71 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~ 71 (210)
..++++.|+|.||+|||+|+|.+.... .......+|.+..+.. +.+.. .-.+.++||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~-rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH-RPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc-CCceEEecCCCc
Confidence 457999999999999999999875432 2225566676666655 33433 335778899994
No 407
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.91 E-value=0.00012 Score=60.20 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=70.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCC----CCC-------CCC-----------ceeeEEEEEEEEE-----------CC
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNS----VHD-------PSP-----------TIGVDFKIKLLTV-----------GG 58 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~----~~~-------~~~-----------~~~~~~~~~~~~~-----------~~ 58 (210)
.+..|+++|.+|+||||++..+.... ... +.+ ..+..++...... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 45788999999999999988874311 100 000 0011111100000 00
Q ss_pred eEEEEEEEeCCCCcccccc----hhhh--hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCC-cEEEEEeCCCC
Q 028315 59 KRLKLTIWDTAGQERFGTL----TSSY--YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDC-VKILVGNKVDR 131 (210)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl 131 (210)
....+.++||||....... ...+ +..+|.+++|+|++.... ..... ..+. ... ..-+|+||.|.
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~---av~~a-~~F~-----~~l~i~gvIlTKlD~ 244 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ---AKNQA-KAFH-----EAVGIGGIIITKLDG 244 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH---HHHHH-HHHH-----hcCCCCEEEEecccC
Confidence 1237899999996543211 1111 346899999999987532 11111 1121 112 23577899996
Q ss_pred CCCCccCHHHHHHHHHHcCCeEEEecc
Q 028315 132 DSERAVTREEGMILAQEHKCLFLECSA 158 (210)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~sa 158 (210)
.... =.+..+....+.|+.+++.
T Consensus 245 ~a~~----G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 245 TAKG----GGALSAVAETGAPIKFIGT 267 (437)
T ss_pred CCcc----cHHHHHHHHHCcCEEEEec
Confidence 4322 1344555666777666554
No 408
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=3.7e-05 Score=63.00 Aligned_cols=115 Identities=21% Similarity=0.320 Sum_probs=78.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCC------------CCC---CCCceeeEEEEEEEEE----------------CCe
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNS------------VHD---PSPTIGVDFKIKLLTV----------------GGK 59 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~------------~~~---~~~~~~~~~~~~~~~~----------------~~~ 59 (210)
.+.-|+.++.+..-|||||-..|.... |.. .....+.+.....+.. ++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 345578899999999999999885321 111 1122233333332221 455
Q ss_pred EEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028315 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 131 (210)
++-+.++|.|||-.|.+.....++-.|++++|+|..+..-.+... .+++.+.. .+.-++++||.|.
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTET-VLrQA~~E-----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIAE-----RIKPVLVMNKMDR 162 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHH-HHHHHHHh-----hccceEEeehhhH
Confidence 789999999999999999999999999999999998864333333 34444432 2223678999995
No 409
>PRK10867 signal recognition particle protein; Provisional
Probab=97.88 E-value=7.9e-05 Score=61.20 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=47.8
Q ss_pred EEEEEEEeCCCCccccc-chh---hh--hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 60 RLKLTIWDTAGQERFGT-LTS---SY--YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
.+.+.++||||...... ... .+ .-..+.+++|+|+...+...+.. ..+... .+ ..-+|+||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a----~~F~~~---~~-i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTA----KAFNEA---LG-LTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHH----HHHHhh---CC-CCEEEEeCccCcc
Confidence 35789999999543321 111 11 12568889999987653322221 222211 11 2356779999633
Q ss_pred CCccCHHHHHHHHHHcCCeEEEecc
Q 028315 134 ERAVTREEGMILAQEHKCLFLECSA 158 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~sa 158 (210)
... .+.......+.|+.++..
T Consensus 255 rgG----~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 255 RGG----AALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ccc----HHHHHHHHHCcCEEEEeC
Confidence 222 255566667788666554
No 410
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.87 E-value=0.00011 Score=54.07 Aligned_cols=87 Identities=18% Similarity=0.073 Sum_probs=49.1
Q ss_pred EEEEEEeCCCCccccc----chhhhh--ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028315 61 LKLTIWDTAGQERFGT----LTSSYY--RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE 134 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 134 (210)
+.+.++||||...... .+..++ ...+-+++|++++....- +. .+...... .+ +-=+|+||.|....
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~--~~-~~~~~~~~----~~-~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED--LE-QALAFYEA----FG-IDGLILTKLDETAR 155 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH--HH-HHHHHHHH----SS-TCEEEEESTTSSST
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH--HH-HHHHHhhc----cc-CceEEEEeecCCCC
Confidence 4689999999554432 222222 257889999999876432 22 22222221 11 23567999997432
Q ss_pred CccCHHHHHHHHHHcCCeEEEeccc
Q 028315 135 RAVTREEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~sa~ 159 (210)
.-....+....+.|+-.++.-
T Consensus 156 ----~G~~l~~~~~~~~Pi~~it~G 176 (196)
T PF00448_consen 156 ----LGALLSLAYESGLPISYITTG 176 (196)
T ss_dssp ----THHHHHHHHHHTSEEEEEESS
T ss_pred ----cccceeHHHHhCCCeEEEECC
Confidence 224556677778887666543
No 411
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.85 E-value=9.7e-05 Score=60.63 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=48.8
Q ss_pred EEEEEEEeCCCCccccc-chh---hh--hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 60 RLKLTIWDTAGQERFGT-LTS---SY--YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
.+.+.++||||...... ... .+ .-..|.+++|+|+...+. .. .+...+.... + ..=+|.||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~---~~-~~a~~f~~~v---~-i~giIlTKlD~~~ 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQD---AV-NTAKTFNERL---G-LTGVVLTKLDGDA 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHH---HH-HHHHHHHhhC---C-CCEEEEeCccCcc
Confidence 45789999999543321 111 11 235788999999886532 22 1222222111 2 2356799999533
Q ss_pred CCccCHHHHHHHHHHcCCeEEEecc
Q 028315 134 ERAVTREEGMILAQEHKCLFLECSA 158 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~sa 158 (210)
... .+.......+.|+.++..
T Consensus 254 ~~G----~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 254 RGG----AALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ccc----HHHHHHHHHCcCEEEEeC
Confidence 222 255666667788666554
No 412
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.84 E-value=0.0001 Score=51.19 Aligned_cols=106 Identities=18% Similarity=0.171 Sum_probs=59.8
Q ss_pred EEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCC
Q 028315 17 LLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTR 96 (210)
Q Consensus 17 ~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (210)
+.-|..|+|||++--.+...-......+.-.+..... ..-.+.+.++|+|+.. .......+..+|.++++.+.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~---~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGL---ANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCC---CCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence 3457889999998776532211111111111111000 0011678999999753 3344567889999999999763
Q ss_pred HhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028315 97 RETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131 (210)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 131 (210)
.++.... ..+..+.... ...++.+|+|+.+.
T Consensus 79 -~s~~~~~-~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 79 -TSITDAY-ALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred -hHHHHHH-HHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 3444444 2333333222 34567899999974
No 413
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.84 E-value=0.00028 Score=56.84 Aligned_cols=132 Identities=18% Similarity=0.212 Sum_probs=71.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCceeeEEEEEEEE-------------------E----------CCeEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSV--HDPSPTIGVDFKIKLLT-------------------V----------GGKRL 61 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~-------------------~----------~~~~~ 61 (210)
.=.|+++|++||||||-+-+|..... ......--.+.+++.+- . .....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 44689999999999998888755444 11222222222322110 0 12345
Q ss_pred EEEEEeCCCCccccc----chhhhhcc--ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcE-EEEEeCCCCCCC
Q 028315 62 KLTIWDTAGQERFGT----LTSSYYRG--AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK-ILVGNKVDRDSE 134 (210)
Q Consensus 62 ~~~l~Dt~G~~~~~~----~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~ 134 (210)
.++|+||.|...++. ....++.. ..-+.+|++++.. .+.+. ..+..+. ..|+ =+|+||.|....
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlk----ei~~~f~---~~~i~~~I~TKlDET~s 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLK----EIIKQFS---LFPIDGLIFTKLDETTS 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHH----HHHHHhc---cCCcceeEEEcccccCc
Confidence 889999999765543 33344433 3455667777754 23333 3333332 2222 367899996432
Q ss_pred CccCHHHHHHHHHHcCCeEEEec
Q 028315 135 RAVTREEGMILAQEHKCLFLECS 157 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~s 157 (210)
+ -....+....+.|+..++
T Consensus 354 --~--G~~~s~~~e~~~PV~YvT 372 (407)
T COG1419 354 --L--GNLFSLMYETRLPVSYVT 372 (407)
T ss_pred --h--hHHHHHHHHhCCCeEEEe
Confidence 1 223444555556654444
No 414
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.00023 Score=58.22 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=70.2
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC---------CCCc---------------eeeEEEEEEEE-------ECCeE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD---------PSPT---------------IGVDFKIKLLT-------VGGKR 60 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~---------~~~~---------------~~~~~~~~~~~-------~~~~~ 60 (210)
..-.++++|+.|+||||++..|.+..... ..++ .+.......-. ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 34589999999999999999876531100 0000 00000000000 01123
Q ss_pred EEEEEEeCCCCccccc----chhhhh--ccccEEEEEEeCCCH-hhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 61 LKLTIWDTAGQERFGT----LTSSYY--RGAHGIILVYDVTRR-ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
..+.++||+|...... ....+. ...+-.++|+|++.. ..+.++. ..+. .--+-=+|+||.|...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~----~~f~-----~~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI----SAYQ-----GHGIHGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH----HHhc-----CCCCCEEEEEeeeCCC
Confidence 4678899999544321 122221 224567889998853 3333222 2221 1113357899999744
Q ss_pred CCccCHHHHHHHHHHcCCeEEEeccc
Q 028315 134 ERAVTREEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~sa~ 159 (210)
.- -.+..+....+.++..++.-
T Consensus 341 ~~----G~~l~~~~~~~lPi~yvt~G 362 (420)
T PRK14721 341 SL----GIALDAVIRRKLVLHYVTNG 362 (420)
T ss_pred Cc----cHHHHHHHHhCCCEEEEECC
Confidence 22 23455666677776666543
No 415
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.83 E-value=5.7e-05 Score=54.81 Aligned_cols=69 Identities=23% Similarity=0.285 Sum_probs=38.8
Q ss_pred EEEEEEEeCCCCcccccc--hhhh---hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028315 60 RLKLTIWDTAGQERFGTL--TSSY---YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE 134 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~--~~~~---~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 134 (210)
.....++++.|......+ .... .-..+.++.|+|+.+-.........+...+.. .=+|++||+|+.+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-------ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF-------ADVIVLNKIDLVSD 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT--------SEEEEE-GGGHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh-------cCEEEEeccccCCh
Confidence 356677888885443333 1111 22468999999997653333333334444432 22889999998654
Q ss_pred C
Q 028315 135 R 135 (210)
Q Consensus 135 ~ 135 (210)
.
T Consensus 157 ~ 157 (178)
T PF02492_consen 157 E 157 (178)
T ss_dssp H
T ss_pred h
Confidence 4
No 416
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.00054 Score=51.51 Aligned_cols=159 Identities=23% Similarity=0.326 Sum_probs=90.7
Q ss_pred EEEEEEcCCCC--cHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeE----EEEEEEeCCCCcccccchhhhhcccc
Q 028315 14 FKILLIGDSGV--GKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKR----LKLTIWDTAGQERFGTLTSSYYRGAH 86 (210)
Q Consensus 14 ~~i~i~G~~~~--GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (210)
-.++++|..|+ ||-+|+.+|....+.. ......+.++ -++++..- +.+-+.-.- .+.+.... ....-..
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~h--gwtid~kyysadi~lcishic-de~~lpn~-~~a~pl~ 80 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFH--GWTIDNKYYSADINLCISHIC-DEKFLPNA-EIAEPLQ 80 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeee--ceEecceeeecceeEEeeccc-chhccCCc-cccccee
Confidence 35789999999 9999999997766644 2222222222 22333221 111111100 11111111 1123346
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC--------------------------------
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE-------------------------------- 134 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------------------------------- 134 (210)
++++|||++....+..+. .|+....... . --.+.++||.|..+.
T Consensus 81 a~vmvfdlse~s~l~alq-dwl~htdins--f-dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgise 156 (418)
T KOG4273|consen 81 AFVMVFDLSEKSGLDALQ-DWLPHTDINS--F-DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISE 156 (418)
T ss_pred eEEEEEeccchhhhHHHH-hhcccccccc--c-hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccc
Confidence 889999999988888777 6766443221 1 124567899886431
Q ss_pred ------------CccCHHHHHHHHHHcCCeEEEeccc------------CCcCHHHHHHHHHHHHHccch
Q 028315 135 ------------RAVTREEGMILAQEHKCLFLECSAK------------NTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 135 ------------~~~~~~~~~~~~~~~~~~~~~~sa~------------~~~~i~~l~~~i~~~~~~~~~ 180 (210)
.-......++++..+++.+++.+|. +..|++.+|..+.-.+....-
T Consensus 157 tegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmi 226 (418)
T KOG4273|consen 157 TEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMI 226 (418)
T ss_pred cccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccce
Confidence 0011223567778889999998884 235888888888776654443
No 417
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.78 E-value=0.00072 Score=53.58 Aligned_cols=96 Identities=14% Similarity=0.163 Sum_probs=50.1
Q ss_pred EEEEEEeCCCCcccccchhhhhc--------cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 61 LKLTIWDTAGQERFGTLTSSYYR--------GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
....+++|.|......+...++. ..++++.|+|+.+......-.......+. . .=+|++||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~----~---AD~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG----Y---ADRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH----h---CCEEEEeccccC
Confidence 45678899996554444443321 24889999999764322111101111121 1 237899999987
Q ss_pred CCCccCHHHHHHHHHHc--CCeEEEecccCCcCHHHHH
Q 028315 133 SERAVTREEGMILAQEH--KCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~l~ 168 (210)
... +......+.. .++++.++- .......+|
T Consensus 164 ~~~----~~~~~~l~~lnp~a~i~~~~~-~~v~~~~l~ 196 (318)
T PRK11537 164 GEA----EKLRERLARINARAPVYTVVH-GDIDLSLLF 196 (318)
T ss_pred CHH----HHHHHHHHHhCCCCEEEEecc-CCCCHHHHh
Confidence 532 2333333333 456666542 223444444
No 418
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.77 E-value=0.00051 Score=56.60 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=49.2
Q ss_pred EEEEEEEeCCCCcccc----cchhhhhc---cccEEEEEEeCCCH-hhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028315 60 RLKLTIWDTAGQERFG----TLTSSYYR---GAHGIILVYDVTRR-ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 131 (210)
.+.+.++||||..... .....++. ...-+++|++++.. ..+..+. ..+. ..+ +--+|+||.|.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~----~~f~----~~~-~~~vI~TKlDe 369 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIY----KHFS----RLP-LDGLIFTKLDE 369 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHH----HHhC----CCC-CCEEEEecccc
Confidence 3578999999965443 22333333 23466788888654 2222222 2221 111 23588999997
Q ss_pred CCCCccCHHHHHHHHHHcCCeEEEeccc
Q 028315 132 DSERAVTREEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 159 (210)
.... -.+..+....+.++..++.-
T Consensus 370 t~~~----G~i~~~~~~~~lPv~yit~G 393 (424)
T PRK05703 370 TSSL----GSILSLLIESGLPISYLTNG 393 (424)
T ss_pred cccc----cHHHHHHHHHCCCEEEEeCC
Confidence 4322 24556667778887776544
No 419
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00031 Score=56.52 Aligned_cols=88 Identities=11% Similarity=0.095 Sum_probs=47.2
Q ss_pred EEEEEEEeCCCCccccc----chhhhhc--cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 60 RLKLTIWDTAGQERFGT----LTSSYYR--GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
.+.+.|+||||...... ....+.. ..+.+++|.++... ..++. ..+..+. .-.+--+|+||.|...
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~----~i~~~f~--~l~i~glI~TKLDET~ 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVM----TILPKLA--EIPIDGFIITKMDETT 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHH----HHHHhcC--cCCCCEEEEEcccCCC
Confidence 36889999999754332 1222222 34666777776432 22222 1222211 1123457799999743
Q ss_pred CCccCHHHHHHHHHHcCCeEEEeccc
Q 028315 134 ERAVTREEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~sa~ 159 (210)
.- =.+..+....+.|+..++.-
T Consensus 357 ~~----G~~Lsv~~~tglPIsylt~G 378 (407)
T PRK12726 357 RI----GDLYTVMQETNLPVLYMTDG 378 (407)
T ss_pred Cc----cHHHHHHHHHCCCEEEEecC
Confidence 22 23455666778887666654
No 420
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00094 Score=58.38 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=70.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCC--CCc--eeeEEEEE---------------EE-EE-----------CCeEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDP--SPT--IGVDFKIK---------------LL-TV-----------GGKRLK 62 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~--~~~~~~~~---------------~~-~~-----------~~~~~~ 62 (210)
--|+|+|+.|+||||.+.++........ ... ...+.+.. .+ .. ......
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 3579999999999999999865331110 000 00000000 00 00 112347
Q ss_pred EEEEeCCCCccccc-ch---hhh--hccccEEEEEEeCCCH-hhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC
Q 028315 63 LTIWDTAGQERFGT-LT---SSY--YRGAHGIILVYDVTRR-ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER 135 (210)
Q Consensus 63 ~~l~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 135 (210)
++|+||+|....+. +. ... ....+-+++|+|++.. +.+.++...|.... .--+-=+|+||.|.....
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~------~~~i~glIlTKLDEt~~~ 339 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGA------GEDVDGCIITKLDEATHL 339 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcc------cCCCCEEEEeccCCCCCc
Confidence 89999999433221 11 111 1235678899998853 33443332222110 001335779999975432
Q ss_pred ccCHHHHHHHHHHcCCeEEEeccc
Q 028315 136 AVTREEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~sa~ 159 (210)
. .+..+....+.|+.+++.-
T Consensus 340 G----~iL~i~~~~~lPI~yit~G 359 (767)
T PRK14723 340 G----PALDTVIRHRLPVHYVSTG 359 (767)
T ss_pred c----HHHHHHHHHCCCeEEEecC
Confidence 2 3455566677787666543
No 421
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.65 E-value=0.00043 Score=45.35 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=47.7
Q ss_pred EEEEc-CCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeC
Q 028315 16 ILLIG-DSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDV 94 (210)
Q Consensus 16 i~i~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (210)
|++.| ..|+||||+...+.........+..-.+. +. .+.+.++|+|+.... .....+..+|.++++++.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~-------d~-~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDL-------DP-QYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeC-------CC-CCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence 56666 56899999888764332211112221111 11 167899999986432 233667889999999987
Q ss_pred CCHhhHHHHH
Q 028315 95 TRRETFTNLS 104 (210)
Q Consensus 95 ~~~~~~~~~~ 104 (210)
+ ..++....
T Consensus 72 ~-~~s~~~~~ 80 (104)
T cd02042 72 S-PLDLDGLE 80 (104)
T ss_pred C-HHHHHHHH
Confidence 5 44555555
No 422
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.65 E-value=0.00067 Score=43.38 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=44.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccc-hhhhhccccEEEEEEeC
Q 028315 16 ILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTL-TSSYYRGAHGIILVYDV 94 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~ 94 (210)
+++.|..|+|||++...+............ .++ .+.++|+++....... .......+|.++++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~---------~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVL---------LID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE---------EEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 578899999999999887544322111111 112 6788899986443221 14556778999999987
Q ss_pred CCH
Q 028315 95 TRR 97 (210)
Q Consensus 95 ~~~ 97 (210)
...
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 754
No 423
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.59 E-value=0.0012 Score=55.05 Aligned_cols=134 Identities=17% Similarity=0.170 Sum_probs=67.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC--C-------CCce---------------eeEEEEEEEE-------ECCeEEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD--P-------SPTI---------------GVDFKIKLLT-------VGGKRLK 62 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~--~-------~~~~---------------~~~~~~~~~~-------~~~~~~~ 62 (210)
--++|+|++|+||||++..|....... . ..+. +.......-. ....+..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 468999999999999999986432111 0 0000 0000000000 0112346
Q ss_pred EEEEeCCCCccccc---chhhhhcc---ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCc
Q 028315 63 LTIWDTAGQERFGT---LTSSYYRG---AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERA 136 (210)
Q Consensus 63 ~~l~Dt~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 136 (210)
+.++||+|...... .....+.. ..-.++|+|++... ..+. .....+. ....--+|+||.|....
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~----~i~~~f~--~~~~~g~IlTKlDet~~-- 406 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLN----EVVQAYR--GPGLAGCILTKLDEAAS-- 406 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHH----HHHHHhc--cCCCCEEEEeCCCCccc--
Confidence 78899999433221 11112222 23368888987542 2222 2222222 12234567899996432
Q ss_pred cCHHHHHHHHHHcCCeEEEeccc
Q 028315 137 VTREEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~sa~ 159 (210)
.-.+..+....+.++.+++.-
T Consensus 407 --~G~~l~i~~~~~lPI~yvt~G 427 (484)
T PRK06995 407 --LGGALDVVIRYKLPLHYVSNG 427 (484)
T ss_pred --chHHHHHHHHHCCCeEEEecC
Confidence 224456666778887666543
No 424
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.49 E-value=0.0009 Score=53.59 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028315 16 ILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~ 36 (210)
.++.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578899999999999999754
No 425
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.48 E-value=0.00032 Score=40.30 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=24.7
Q ss_pred cccEEEEEEeCCCHhhH--HHHHHHHHHHHhhhccCCCCcEEEEEeCCC
Q 028315 84 GAHGIILVYDVTRRETF--TNLSSVWAKEVELYSTNQDCVKILVGNKVD 130 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (210)
-.+++++++|++....+ ++-. .++..++.. -.++|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~-~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQL-SLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHH-HHHHHHHHH--TTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHH-HHHHHHHHH--cCCCCEEEEEeccC
Confidence 36899999999986654 2222 233333332 25899999999998
No 426
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.0016 Score=53.15 Aligned_cols=134 Identities=21% Similarity=0.216 Sum_probs=70.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCC-CC----C---CC---------------CceeeEEEEEE------EEECCeEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNS-VH----D---PS---------------PTIGVDFKIKL------LTVGGKRLKL 63 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~-~~----~---~~---------------~~~~~~~~~~~------~~~~~~~~~~ 63 (210)
..-++++|++|+||||++.+|.... .. . .. ...+....... ..+...++.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3468899999999999999886421 00 0 00 01111111100 0001134578
Q ss_pred EEEeCCCCcccc-c---chhhhhc-----cccEEEEEEeCCCHh-hHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 64 TIWDTAGQERFG-T---LTSSYYR-----GAHGIILVYDVTRRE-TFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 64 ~l~Dt~G~~~~~-~---~~~~~~~-----~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
.++||+|..... . .+..+++ ...-.++|+|++... ....+. ..+. .. -+-=+|+||.|...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~----~~f~----~~-~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL----KAYE----SL-NYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH----HHhc----CC-CCCEEEEEcccCCC
Confidence 999999964322 1 2222222 234678899988764 222222 2221 11 13357899999743
Q ss_pred CCccCHHHHHHHHHHcCCeEEEeccc
Q 028315 134 ERAVTREEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~sa~ 159 (210)
... .+..+....+.|+..++.-
T Consensus 374 ~~G----~il~i~~~~~lPI~ylt~G 395 (432)
T PRK12724 374 FLG----SFLELADTYSKSFTYLSVG 395 (432)
T ss_pred Ccc----HHHHHHHHHCCCEEEEecC
Confidence 221 2455566677886666543
No 427
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.42 E-value=0.00098 Score=45.85 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSV 38 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~ 38 (210)
-.+++.|++|+|||+|++.+.....
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999999976654
No 428
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.42 E-value=0.0011 Score=51.24 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=70.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-------CC---------------CceeeEEEEEEEE---------E-CCeEE
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-------PS---------------PTIGVDFKIKLLT---------V-GGKRL 61 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-------~~---------------~~~~~~~~~~~~~---------~-~~~~~ 61 (210)
-+++++|++|+||||++..+....... .. ...+..+....-. . ...++
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 589999999999999998774431100 00 0011111110000 0 11246
Q ss_pred EEEEEeCCCCccccc-c---hhhhh--ccccEEEEEEeCCC-HhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028315 62 KLTIWDTAGQERFGT-L---TSSYY--RGAHGIILVYDVTR-RETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE 134 (210)
Q Consensus 62 ~~~l~Dt~G~~~~~~-~---~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 134 (210)
.+.++||||...... . +..++ ...+-+++|+|++. .....+.. ..+. .-.+-=+|+||.|....
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~----~~f~-----~~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII----TNFK-----DIHIDGIVFTKFDETAS 226 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH----HHhC-----CCCCCEEEEEeecCCCC
Confidence 889999999653321 1 22222 24567899999874 33322222 2222 11234578999997543
Q ss_pred CccCHHHHHHHHHHcCCeEEEecc
Q 028315 135 RAVTREEGMILAQEHKCLFLECSA 158 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~sa 158 (210)
.. -+..+....+.|+..++.
T Consensus 227 ~G----~~l~~~~~~~~Pi~~it~ 246 (270)
T PRK06731 227 SG----ELLKIPAVSSAPIVLMTD 246 (270)
T ss_pred cc----HHHHHHHHHCcCEEEEeC
Confidence 21 344556667777666653
No 429
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.0017 Score=52.84 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=70.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCC--------CC---CCCc---------------eeeEEEEEEEE-------ECCe
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSV--------HD---PSPT---------------IGVDFKIKLLT-------VGGK 59 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~--------~~---~~~~---------------~~~~~~~~~~~-------~~~~ 59 (210)
+-.|+++|++|+||||.+.++..... .. ...+ .+..+...... -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 45789999999999999988753211 00 0000 11111110000 0113
Q ss_pred EEEEEEEeCCCCccccc----chhhhhccc--c-EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 60 RLKLTIWDTAGQERFGT----LTSSYYRGA--H-GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
++.+.++||+|...... ....++... + -.++|+|++... ..+. ..+..+. .--+-=+|+||.|..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~----~~~~~~~--~~~~~~~I~TKlDet 325 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVK----EIFHQFS--PFSYKTVIFTKLDET 325 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHH----HHHHHhc--CCCCCEEEEEeccCC
Confidence 46889999999543321 222233322 3 588999998763 2222 2233222 111345789999974
Q ss_pred CCCccCHHHHHHHHHHcCCeEEEecc
Q 028315 133 SERAVTREEGMILAQEHKCLFLECSA 158 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~sa 158 (210)
.... -+..+....+.|+..++.
T Consensus 326 ~~~G----~~l~~~~~~~~Pi~yit~ 347 (388)
T PRK12723 326 TCVG----NLISLIYEMRKEVSYVTD 347 (388)
T ss_pred Ccch----HHHHHHHHHCCCEEEEeC
Confidence 3322 344555666777666543
No 430
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.00027 Score=56.30 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=57.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-C---------------------CCceeeEEEEEEEEE------------
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-P---------------------SPTIGVDFKIKLLTV------------ 56 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~---------------------~~~~~~~~~~~~~~~------------ 56 (210)
.++--|.++|..|+||||.+.+|....... + ....+..++......
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 445668999999999999887763211110 0 011111222110011
Q ss_pred -CCeEEEEEEEeCCCCc-ccccchhhh-----hccccEEEEEEeCCCHhhHHHHHHHHHHHH
Q 028315 57 -GGKRLKLTIWDTAGQE-RFGTLTSSY-----YRGAHGIILVYDVTRRETFTNLSSVWAKEV 111 (210)
Q Consensus 57 -~~~~~~~~l~Dt~G~~-~~~~~~~~~-----~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 111 (210)
..+++.++|.||+|.. ...++.... .-..|-+|+|.|++-.+..+.....|...+
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v 240 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV 240 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence 2345789999999943 222233222 235799999999998776655554555554
No 431
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.39 E-value=0.00017 Score=48.59 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999664
No 432
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.36 E-value=0.00021 Score=52.29 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
+-++++|+.|+||||+.+.+..
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHH
Confidence 4578999999999999998743
No 433
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.35 E-value=0.00024 Score=52.83 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=22.9
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.+.+..-|+|+|++|+|||||++.|...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3345667889999999999999999654
No 434
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.34 E-value=0.00015 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.=|+++|++|+|||||+++|+...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 447999999999999999997654
No 435
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.0002 Score=51.92 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
||+|+|+|||||||+..++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999766
No 436
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.33 E-value=0.0019 Score=42.58 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=55.3
Q ss_pred EcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCH
Q 028315 19 IGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR 97 (210)
Q Consensus 19 ~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (210)
-+..|+||||+...+...-... ...+.-.+.... . +..+.++|+|+... ......+..+|.++++.+.+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~-----~-~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~- 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ-----F-GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDL- 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC-----C-CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCCh-
Confidence 3567799999777663322211 112211111111 0 11688999998643 233456788999999998664
Q ss_pred hhHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028315 98 ETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128 (210)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (210)
.+..... .+...+..........+.+|+|+
T Consensus 77 ~s~~~~~-~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAK-RLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHH-HHHHHHHHcCCCCcCceEEEecC
Confidence 4455555 45555544331113456677774
No 437
>PRK08118 topology modulation protein; Reviewed
Probab=97.33 E-value=0.00021 Score=51.30 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
||+|+|++|+|||||...+....
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999986543
No 438
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.31 E-value=0.0017 Score=54.05 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=53.5
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHH
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 165 (210)
..+|+|=|+-+...+.... .+...+..+......|+|++++-+-......-.......+....++..+........-+.
T Consensus 195 ~~liLveDLPn~~~~d~~~-~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MK 273 (634)
T KOG1970|consen 195 KKLILVEDLPNQFYRDDSE-TFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMK 273 (634)
T ss_pred ceEEEeeccchhhhhhhHH-HHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHH
Confidence 3457777776654444333 566666666656788999999887653221111111222234556667777777666777
Q ss_pred HHHHHHHHHHH
Q 028315 166 QCFKDLLYKIL 176 (210)
Q Consensus 166 ~l~~~i~~~~~ 176 (210)
..+..|+....
T Consensus 274 K~L~ric~~e~ 284 (634)
T KOG1970|consen 274 KFLKRICRIEA 284 (634)
T ss_pred HHHHHHHHHhc
Confidence 77777666544
No 439
>PRK07261 topology modulation protein; Provisional
Probab=97.30 E-value=0.00023 Score=51.27 Aligned_cols=22 Identities=45% Similarity=0.622 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
||+|+|++|+|||||.+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998644
No 440
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.24 E-value=0.00021 Score=51.00 Aligned_cols=22 Identities=23% Similarity=0.599 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999755
No 441
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.23 E-value=0.00028 Score=48.95 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028315 16 ILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~ 36 (210)
|+++|+||+|||||++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998643
No 442
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.23 E-value=0.0016 Score=50.63 Aligned_cols=108 Identities=12% Similarity=0.130 Sum_probs=66.4
Q ss_pred CCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc------------
Q 028315 7 NNSYDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF------------ 74 (210)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------------ 74 (210)
.+...+.-+++++|++|-|||+++++|........ .... ....+....+|.....
T Consensus 55 ~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 55 YPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDA------------ERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred CCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCC------------ccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 34456667899999999999999999977554322 1111 1224445555542111
Q ss_pred ------------ccchhhhhccccEEEEEEeCCCH---hhHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028315 75 ------------GTLTSSYYRGAHGIILVYDVTRR---ETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128 (210)
Q Consensus 75 ------------~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (210)
.......++...+=++++|=-.- -+..+-. .++..+....+...+|+|.||++
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr-~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQR-EFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHH-HHHHHHHHHhhccCCCeEEeccH
Confidence 11122345677888888885532 1223333 56677777776778999999865
No 443
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.21 E-value=0.0013 Score=47.49 Aligned_cols=45 Identities=20% Similarity=0.075 Sum_probs=29.2
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE 134 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 134 (210)
|++++|+|+.++.+...- .+...+. ....+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~~--~i~~~~~--l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRCP--QVEEAVL--QAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCCH--HHHHHHH--hccCCCCEEEEEehhhcCCH
Confidence 789999999887432211 2223221 11346899999999999643
No 444
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.18 E-value=0.0046 Score=44.69 Aligned_cols=86 Identities=22% Similarity=0.098 Sum_probs=56.9
Q ss_pred eEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC
Q 028315 59 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT 138 (210)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 138 (210)
..+.+.++|||+... ......+..+|.+++++..+.. +...+. .+...+.. .+.|+.+|+|+.|.... .
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~-~~~~~~-~~~~~l~~----~~~~~~vV~N~~~~~~~---~ 159 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS-GLHDLE-RAVELVRH----FGIPVGVVINKYDLNDE---I 159 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc-cHHHHH-HHHHHHHH----cCCCEEEEEeCCCCCcc---h
Confidence 457899999997642 2334567889999999988743 445554 44444442 35678899999986432 2
Q ss_pred HHHHHHHHHHcCCeEEE
Q 028315 139 REEGMILAQEHKCLFLE 155 (210)
Q Consensus 139 ~~~~~~~~~~~~~~~~~ 155 (210)
.++..++.+..+++++.
T Consensus 160 ~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 160 AEEIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHHHcCCCeEE
Confidence 34556667777877553
No 445
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.0002 Score=51.49 Aligned_cols=24 Identities=42% Similarity=0.733 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.=+++.|++|+|||||++.|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999998776
No 446
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.13 E-value=0.0044 Score=52.37 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=45.9
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCC-cEEEEEeCCCCCCC----Cc--cCHH--HHHHHHHHcCCeEEEec
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDC-VKILVGNKVDRDSE----RA--VTRE--EGMILAQEHKCLFLECS 157 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~----~~--~~~~--~~~~~~~~~~~~~~~~s 157 (210)
-+|+|=|+-+.-.-+. ..+...+..+...... |+|+|++-+|.... +. +..+ ...++....++..+...
T Consensus 134 kvILVEDlPN~~~~~~--~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FN 211 (519)
T PF03215_consen 134 KVILVEDLPNVFHRDT--SRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFN 211 (519)
T ss_pred eEEEeeccccccchhH--HHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEec
Confidence 4555545543211111 2455555555434555 99999996543211 00 1111 11233445577777777
Q ss_pred ccCCcCHHHHHHHHHHHH
Q 028315 158 AKNTEDVKQCFKDLLYKI 175 (210)
Q Consensus 158 a~~~~~i~~l~~~i~~~~ 175 (210)
+.....+...+..|+..-
T Consensus 212 pIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 212 PIAPTFMKKALKRILKKE 229 (519)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 777777777777766643
No 447
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.12 E-value=0.0088 Score=43.01 Aligned_cols=84 Identities=12% Similarity=-0.065 Sum_probs=49.6
Q ss_pred EEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHH
Q 028315 62 KLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREE 141 (210)
Q Consensus 62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 141 (210)
.+.++|+|+.... .....+..+|.++++++.+.. ++.... .+...+.. .......+++|+.+.... ...+.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~-~~~~~~~~---~~~~~~~iv~N~~~~~~~--~~~~~ 134 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDAD-RVKGLLEA---LGIKVVGVIVNRVRPDMV--EGGDM 134 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHH-HHHHHHHH---cCCceEEEEEeCCccccc--chhhH
Confidence 6889999985432 334557889999999987743 344444 34444433 122356789999986432 22222
Q ss_pred HHHHHHHcCCeEE
Q 028315 142 GMILAQEHKCLFL 154 (210)
Q Consensus 142 ~~~~~~~~~~~~~ 154 (210)
...+.+.++.+++
T Consensus 135 ~~~~~~~~~~~v~ 147 (179)
T cd02036 135 VEDIEEILGVPLL 147 (179)
T ss_pred HHHHHHHhCCCEE
Confidence 3445555666654
No 448
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.12 E-value=0.00023 Score=57.52 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=63.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhh----CCCCC-------CC-----------CceeeEEEEEE-----EEE-------
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLIS----NSVHD-------PS-----------PTIGVDFKIKL-----LTV------- 56 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~----~~~~~-------~~-----------~~~~~~~~~~~-----~~~------- 56 (210)
.++..|+++|..|+||||..-+|.. ..... +- ...+..++... +.+
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 3467899999999999998776632 11100 00 01122222110 000
Q ss_pred -CCeEEEEEEEeCCCCcccc-cchhhh-----hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028315 57 -GGKRLKLTIWDTAGQERFG-TLTSSY-----YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKV 129 (210)
Q Consensus 57 -~~~~~~~~l~Dt~G~~~~~-~~~~~~-----~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (210)
....+.+.++||+|....+ .+.... .-+.|=+++|+|+.-.+...+....|.+.+.. .=||+||.
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i--------tGvIlTKl 249 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI--------TGVILTKL 249 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC--------ceEEEEcc
Confidence 1223578899999954333 222221 34689999999999887665555444443321 12556777
Q ss_pred CC
Q 028315 130 DR 131 (210)
Q Consensus 130 Dl 131 (210)
|-
T Consensus 250 DG 251 (451)
T COG0541 250 DG 251 (451)
T ss_pred cC
Confidence 74
No 449
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.11 E-value=0.00056 Score=41.35 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028315 16 ILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~ 37 (210)
|++.|.+|+||||+.+.+...-
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999986553
No 450
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.10 E-value=0.00042 Score=51.12 Aligned_cols=25 Identities=20% Similarity=-0.036 Sum_probs=20.3
Q ss_pred EecccCCcCHHHHHHHHHHHHHccc
Q 028315 155 ECSAKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 155 ~~sa~~~~~i~~l~~~i~~~~~~~~ 179 (210)
.|||.+.+-+.|+++.+.+...+..
T Consensus 163 PTSALDPElv~EVL~vm~~LA~eGm 187 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAEEGM 187 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCC
Confidence 3899999999999988887766553
No 451
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.0027 Score=46.64 Aligned_cols=119 Identities=13% Similarity=0.213 Sum_probs=59.9
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC---Ccccc-----cchhhhhccccE
Q 028315 16 ILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAG---QERFG-----TLTSSYYRGAHG 87 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G---~~~~~-----~~~~~~~~~~d~ 87 (210)
|++.|.||+|||||.+.|...-....-..+ +....-....+||-.- .+.|. +.........+-
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi---------~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalkn 74 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVI---------HLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALKN 74 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhcc---------ccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999987543332211111 0111112345566432 11111 111122233455
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC--------CCCCccCHHHHHHHHHHc
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR--------DSERAVTREEGMILAQEH 149 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl--------~~~~~~~~~~~~~~~~~~ 149 (210)
.++.+|..+. +..+. ..+.....+...+..||-.++.+ .+...+.++-..++...+
T Consensus 75 ~~VIvDdtNY--yksmR----rqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~Evl~qly~Rf 138 (261)
T COG4088 75 YLVIVDDTNY--YKSMR----RQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPEEVLRQLYDRF 138 (261)
T ss_pred eEEEEecccH--HHHHH----HHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCHHHHHHHHHhh
Confidence 5666777765 22222 22222232456677777777654 234455666666666554
No 452
>PRK01889 GTPase RsgA; Reviewed
Probab=97.05 E-value=0.00082 Score=54.16 Aligned_cols=25 Identities=40% Similarity=0.703 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSV 38 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~ 38 (210)
-+++++|.+|+|||||++.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3789999999999999999987544
No 453
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.04 E-value=0.00074 Score=39.72 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
..+|.|+.|+|||||+..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998754
No 454
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.99 E-value=0.0008 Score=46.62 Aligned_cols=21 Identities=52% Similarity=0.825 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028315 16 ILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~ 36 (210)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999765
No 455
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.99 E-value=0.00074 Score=46.53 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSV 38 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~ 38 (210)
.++|+|+.|+|||||++.+.+...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEEccCCCccccceeeeccccc
Confidence 578999999999999998866543
No 456
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.98 E-value=0.00074 Score=45.95 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028315 16 ILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~ 37 (210)
|++.|++|+|||++++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999996654
No 457
>PRK06217 hypothetical protein; Validated
Probab=96.97 E-value=0.00071 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.+|+|+|.+|+|||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999654
No 458
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.00074 Score=50.85 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028315 16 ILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~ 37 (210)
|+++|++|+|||||++-+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999886543
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.93 E-value=0.00093 Score=45.56 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDP 41 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~ 41 (210)
-.++++|++|+|||+++..+........
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 3689999999999999999976655443
No 460
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.92 E-value=0.0037 Score=42.93 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.|++.|+.|+|||||++.+....
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999997764
No 461
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.91 E-value=0.00084 Score=45.49 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028315 16 ILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~ 36 (210)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998655
No 462
>PRK03839 putative kinase; Provisional
Probab=96.90 E-value=0.00094 Score=48.43 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
+|+++|.||+||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998654
No 463
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.90 E-value=0.0015 Score=51.97 Aligned_cols=94 Identities=20% Similarity=0.119 Sum_probs=63.9
Q ss_pred eCCCCc-ccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHH
Q 028315 67 DTAGQE-RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMIL 145 (210)
Q Consensus 67 Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 145 (210)
+.||+. .+.......+..+|+++.|+|+.++.+... ..+.... .+.|.++|+||.|+.+... ..+....+
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~------~~l~~~v--~~k~~i~vlNK~DL~~~~~-~~~W~~~~ 86 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN------PELERIV--KEKPKLLVLNKADLAPKEV-TKKWKKYF 86 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC------ccHHHHH--ccCCcEEEEehhhcCCHHH-HHHHHHHH
Confidence 346653 444566667888999999999999976433 3333333 3445599999999976543 44445555
Q ss_pred HHHcCCeEEEecccCCcCHHHHHH
Q 028315 146 AQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 146 ~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
....+...+.++++.+.+...+..
T Consensus 87 ~~~~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 87 KKEEGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HhcCCCccEEEEeecccCccchHH
Confidence 555567788888888877766664
No 464
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.89 E-value=0.0012 Score=47.73 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.|+++|++|+|||||++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999997643
No 465
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.88 E-value=0.00088 Score=50.09 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-|+|+|++|||||||++-+.+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3789999999999999988443
No 466
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.87 E-value=0.001 Score=48.55 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++|+|++|+|||||++.+....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999996543
No 467
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.86 E-value=0.0014 Score=48.71 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
+...-|+|+|++|+|||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999999654
No 468
>PRK14530 adenylate kinase; Provisional
Probab=96.86 E-value=0.0011 Score=49.67 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
+|+|+|+|||||||+.+.|...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988543
No 469
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.85 E-value=0.00097 Score=50.43 Aligned_cols=29 Identities=31% Similarity=0.595 Sum_probs=24.3
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCC
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSV 38 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~ 38 (210)
.+..+|++|+|.+|+|||+|+-.++....
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 35679999999999999999998876543
No 470
>PRK04195 replication factor C large subunit; Provisional
Probab=96.85 E-value=0.012 Score=49.61 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-.+++.|++|+|||++++.+....
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 457999999999999999997654
No 471
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.83 E-value=0.0013 Score=45.71 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.|+|+|+.++|||||++.+.+.-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999986653
No 472
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.82 E-value=0.0011 Score=47.97 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.++|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998665
No 473
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.82 E-value=0.0013 Score=45.51 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.|+++|++|+|||+|++.+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999886544
No 474
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.79 E-value=0.0012 Score=48.66 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028315 16 ILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~ 37 (210)
|+|.|++|+|||||.+.+.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999986653
No 475
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.78 E-value=0.0068 Score=47.27 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028315 16 ILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~ 36 (210)
|+|+|++|+|||+|..++...
T Consensus 2 i~i~G~t~~GKs~la~~l~~~ 22 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKK 22 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999654
No 476
>PRK13949 shikimate kinase; Provisional
Probab=96.77 E-value=0.0014 Score=47.06 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
+|+++|++|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988654
No 477
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.73 E-value=0.0015 Score=47.62 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=21.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.-.++++|++|+|||||++.+++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468999999999999999987643
No 478
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.71 E-value=0.0071 Score=44.64 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028315 16 ILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~ 37 (210)
|+|.|++|+||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999876554
No 479
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.71 E-value=0.0017 Score=48.33 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.1
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
....|+|.|++|||||||.+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998664
No 480
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.70 E-value=0.01 Score=41.71 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028315 16 ILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~ 37 (210)
++|.|++|+|||+|+..+....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999986543
No 481
>PHA00729 NTP-binding motif containing protein
Probab=96.70 E-value=0.0019 Score=48.38 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.+|++.|+||+|||+|..++...
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998654
No 482
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.70 E-value=0.011 Score=45.59 Aligned_cols=84 Identities=23% Similarity=0.273 Sum_probs=42.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDV 94 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (210)
.|+|.|++|+||||+++.++.............+ ...+..+.+ ..++.+ +......|.......++.---++++-.+
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiE-dp~E~~~~~-~~q~~v-~~~~~~~~~~~l~~~lR~~PD~i~vgEi 158 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVE-DPVEYQIPG-INQVQV-NEKAGLTFARGLRAILRQDPDIIMVGEI 158 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC-CCceecCCC-ceEEEe-CCcCCcCHHHHHHHHhccCCCEEEeccC
Confidence 4899999999999999988765432111000000 000111111 112221 1111123445555666655556667777
Q ss_pred CCHhhHH
Q 028315 95 TRRETFT 101 (210)
Q Consensus 95 ~~~~~~~ 101 (210)
.+++++.
T Consensus 159 R~~e~a~ 165 (264)
T cd01129 159 RDAETAE 165 (264)
T ss_pred CCHHHHH
Confidence 7776544
No 483
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.68 E-value=0.0015 Score=47.48 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
.|+++|++||||||+.+.+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999864
No 484
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.67 E-value=0.0015 Score=48.88 Aligned_cols=21 Identities=48% Similarity=0.699 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
-|+++|++|+|||||++.+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999999854
No 485
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=96.66 E-value=0.11 Score=37.10 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=93.6
Q ss_pred CCCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcc
Q 028315 5 VGNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRG 84 (210)
Q Consensus 5 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (210)
.+.-+-.+...|+++|..+.++..|...+...... +. ..++... . .-.|. +....+ ..
T Consensus 7 ~~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~---------~~-l~Vh~a~-s-----LPLp~--e~~~lR----pr 64 (176)
T PF11111_consen 7 FDKLPELNTATILLVGTEEALLQQLAEAMLEEDKE---------FK-LKVHLAK-S-----LPLPS--ENNNLR----PR 64 (176)
T ss_pred cccCCCcceeEEEEecccHHHHHHHHHHHHhhccc---------ee-EEEEEec-c-----CCCcc--cccCCC----ce
Confidence 34445567899999999999999999999752211 11 1111110 0 01121 111111 34
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCH
Q 028315 85 AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDV 164 (210)
Q Consensus 85 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 164 (210)
.|.|++++|....-+++.+... +..+.... ..+ .+.++++-........+...+...++..+.++++.+.-.+..+.
T Consensus 65 IDlIVFvinl~sk~SL~~ve~S-L~~vd~~f-flG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~ 141 (176)
T PF11111_consen 65 IDLIVFVINLHSKYSLQSVEAS-LSHVDPSF-FLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGR 141 (176)
T ss_pred eEEEEEEEecCCcccHHHHHHH-HhhCChhh-hcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHH
Confidence 7999999999999888887733 22222111 112 34566666665565678889999999999999999998888776
Q ss_pred HHHHHHHHHHHH
Q 028315 165 KQCFKDLLYKIL 176 (210)
Q Consensus 165 ~~l~~~i~~~~~ 176 (210)
..+=+.|++.+.
T Consensus 142 ~~lAqRLL~~lq 153 (176)
T PF11111_consen 142 TSLAQRLLRMLQ 153 (176)
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 486
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.65 E-value=0.0074 Score=46.80 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=42.4
Q ss_pred EEEEEEEeCCCCcccccchhhhhc--------cccEEEEEEeCCCHhhHH---HHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028315 60 RLKLTIWDTAGQERFGTLTSSYYR--------GAHGIILVYDVTRRETFT---NLSSVWAKEVELYSTNQDCVKILVGNK 128 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (210)
.+...+++|.|...-..+...|+. ..|+++-|+|+.+..-.. .....|.+.....+ . .--+++||
T Consensus 145 kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA-~---AD~II~NK 220 (391)
T KOG2743|consen 145 KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA-L---ADRIIMNK 220 (391)
T ss_pred CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHh-h---hheeeecc
Confidence 456778899997666666655543 358999999987532100 00012222222221 1 12578999
Q ss_pred CCCCCCCcc
Q 028315 129 VDRDSERAV 137 (210)
Q Consensus 129 ~Dl~~~~~~ 137 (210)
.|+..+.++
T Consensus 221 tDli~~e~~ 229 (391)
T KOG2743|consen 221 TDLVSEEEV 229 (391)
T ss_pred ccccCHHHH
Confidence 999876443
No 487
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.64 E-value=0.0018 Score=42.58 Aligned_cols=21 Identities=48% Similarity=0.901 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 028315 14 FKILLIGDSGVGKSSILLSLI 34 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~ 34 (210)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357999999999999999875
No 488
>PRK14532 adenylate kinase; Provisional
Probab=96.64 E-value=0.0018 Score=47.28 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
+|+++|+||+||||+..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998643
No 489
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0016 Score=48.02 Aligned_cols=18 Identities=56% Similarity=0.798 Sum_probs=16.6
Q ss_pred EEEEcCCCCcHHHHHHHH
Q 028315 16 ILLIGDSGVGKSSILLSL 33 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l 33 (210)
.+++|++|+|||||++.+
T Consensus 36 TAlIGPSGcGKST~LR~l 53 (253)
T COG1117 36 TALIGPSGCGKSTLLRCL 53 (253)
T ss_pred EEEECCCCcCHHHHHHHH
Confidence 578999999999999988
No 490
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.64 E-value=0.0017 Score=48.81 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028315 16 ILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~ 36 (210)
|+|.|++|||||||++.+.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998654
No 491
>PRK08233 hypothetical protein; Provisional
Probab=96.62 E-value=0.0021 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
+-|+|.|.+|+|||||.+++...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 66889999999999999999654
No 492
>PRK10646 ADP-binding protein; Provisional
Probab=96.62 E-value=0.013 Score=41.30 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-|++-|+-|+|||||++.+...-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999997654
No 493
>PRK00625 shikimate kinase; Provisional
Probab=96.61 E-value=0.002 Score=46.48 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
+|+++|.+|+||||+.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988543
No 494
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.60 E-value=0.0021 Score=46.30 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSV 38 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~ 38 (210)
=.++|+|++|+|||||+|-+.+-..
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC
Confidence 3689999999999999998865443
No 495
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.60 E-value=0.0017 Score=47.49 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
||+++|+||+||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998654
No 496
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.59 E-value=0.002 Score=46.37 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.-++|+|.+|+|||||++++...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 35899999999999999999655
No 497
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=96.59 E-value=0.0052 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.8
Q ss_pred EcCCCCcHHHHHHHHhhCCCCCC
Q 028315 19 IGDSGVGKSSILLSLISNSVHDP 41 (210)
Q Consensus 19 ~G~~~~GKSsli~~l~~~~~~~~ 41 (210)
+|+.++|||||+|.+++..|...
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m 23 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVM 23 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCcccc
Confidence 59999999999999999988773
No 498
>PRK02496 adk adenylate kinase; Provisional
Probab=96.58 E-value=0.0023 Score=46.59 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.|++|+|+||+||||+.+.+...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988643
No 499
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.57 E-value=0.0021 Score=46.54 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
=.++++|+.|+|||||++.+.+-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 368999999999999999987654
No 500
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.57 E-value=0.017 Score=46.53 Aligned_cols=122 Identities=14% Similarity=0.008 Sum_probs=69.3
Q ss_pred ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCc
Q 028315 83 RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTE 162 (210)
Q Consensus 83 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 162 (210)
-.+|++|-|+|+.||.....- +....+... .+.+..+.|+||+||.+. -+.......+...+-..-|..|..+..
T Consensus 212 DSSDVvvqVlDARDPmGTrc~--~ve~ylkke--~phKHli~vLNKvDLVPt-wvt~~Wv~~lSkeyPTiAfHAsi~nsf 286 (572)
T KOG2423|consen 212 DSSDVVVQVLDARDPMGTRCK--HVEEYLKKE--KPHKHLIYVLNKVDLVPT-WVTAKWVRHLSKEYPTIAFHASINNSF 286 (572)
T ss_pred cccceeEEeeeccCCcccccH--HHHHHHhhc--CCcceeEEEeeccccccH-HHHHHHHHHHhhhCcceeeehhhcCcc
Confidence 468999999999998653211 222333322 366788999999999753 244445556666666667888888888
Q ss_pred CHHHHHHHHHHHHHccchhhhcccccccccccchhhhhhhcCCCCCC
Q 028315 163 DVKQCFKDLLYKILEVPSLLEQGSAVVKNQILKQKEVQESARGGNCC 209 (210)
Q Consensus 163 ~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 209 (210)
|=..+++.+.+...-......-+---...++.-+.+.-+.-++|..|
T Consensus 287 GKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVC 333 (572)
T KOG2423|consen 287 GKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVC 333 (572)
T ss_pred chhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccc
Confidence 86665544433322222222222222334444444444444444443
Done!