Query 028315
Match_columns 210
No_of_seqs 145 out of 1636
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 15:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.2E-43 4E-48 264.1 20.2 207 1-210 1-208 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 6.6E-37 2.2E-41 226.4 24.2 172 10-183 5-177 (206)
3 3cpj_B GTP-binding protein YPT 100.0 8.3E-36 2.8E-40 223.3 21.2 176 7-184 7-183 (223)
4 2bov_A RAla, RAS-related prote 100.0 2.1E-35 7.3E-40 218.0 22.2 168 10-179 11-179 (206)
5 1vg8_A RAS-related protein RAB 100.0 1.5E-35 5.2E-40 219.0 21.3 171 10-182 5-180 (207)
6 3kkq_A RAS-related protein M-R 100.0 1.5E-34 5E-39 209.8 24.0 171 5-177 10-182 (183)
7 1z0f_A RAB14, member RAS oncog 100.0 7.9E-35 2.7E-39 210.1 22.4 175 1-177 3-178 (179)
8 3tkl_A RAS-related protein RAB 100.0 4.4E-34 1.5E-38 209.4 24.5 171 9-181 12-183 (196)
9 1x3s_A RAS-related protein RAB 100.0 4.6E-34 1.6E-38 209.0 24.4 176 8-185 10-186 (195)
10 2a5j_A RAS-related protein RAB 100.0 3.5E-34 1.2E-38 209.5 23.3 172 5-178 13-185 (191)
11 3t5g_A GTP-binding protein RHE 100.0 4E-34 1.4E-38 207.2 23.3 169 11-181 4-173 (181)
12 2gf9_A RAS-related protein RAB 100.0 6.2E-34 2.1E-38 207.7 24.4 172 5-178 14-186 (189)
13 2efe_B Small GTP-binding prote 100.0 3.2E-34 1.1E-38 207.4 22.6 171 6-178 5-176 (181)
14 3tw8_B RAS-related protein RAB 100.0 3.4E-34 1.2E-38 207.1 22.6 171 9-182 5-176 (181)
15 2ew1_A RAS-related protein RAB 100.0 2.2E-34 7.6E-39 212.3 21.6 170 7-178 20-190 (201)
16 4dsu_A GTPase KRAS, isoform 2B 100.0 5.1E-34 1.8E-38 207.7 22.6 169 11-182 2-171 (189)
17 2nzj_A GTP-binding protein REM 100.0 2.3E-34 8E-39 207.0 20.5 167 11-178 2-170 (175)
18 2hup_A RAS-related protein RAB 100.0 3.6E-34 1.2E-38 211.1 21.3 170 8-179 24-195 (201)
19 2g6b_A RAS-related protein RAB 100.0 1.1E-33 3.9E-38 204.4 23.6 170 8-179 5-176 (180)
20 1r2q_A RAS-related protein RAB 100.0 5.8E-34 2E-38 203.8 21.7 165 10-176 3-168 (170)
21 1zbd_A Rabphilin-3A; G protein 100.0 9.9E-34 3.4E-38 208.8 23.3 169 9-179 4-173 (203)
22 1z08_A RAS-related protein RAB 100.0 4.3E-34 1.5E-38 204.7 20.8 166 10-177 3-169 (170)
23 2bme_A RAB4A, RAS-related prot 100.0 7.6E-34 2.6E-38 206.5 22.1 170 9-180 6-176 (186)
24 2fu5_C RAS-related protein RAB 100.0 1.4E-34 4.7E-39 210.0 17.9 169 10-180 5-174 (183)
25 3q72_A GTP-binding protein RAD 100.0 3.4E-34 1.2E-38 204.6 19.5 164 13-178 2-165 (166)
26 1z0j_A RAB-22, RAS-related pro 100.0 1.8E-33 6.2E-38 201.3 23.3 165 10-176 3-168 (170)
27 2oil_A CATX-8, RAS-related pro 100.0 1.4E-33 4.9E-38 206.4 23.0 170 8-179 20-190 (193)
28 2fn4_A P23, RAS-related protei 100.0 1.7E-33 5.8E-38 203.5 23.0 169 9-179 5-174 (181)
29 2fg5_A RAB-22B, RAS-related pr 100.0 6.3E-34 2.2E-38 208.3 20.5 169 8-178 18-187 (192)
30 3bc1_A RAS-related protein RAB 100.0 1.1E-33 3.8E-38 206.6 21.7 174 5-179 3-187 (195)
31 1ek0_A Protein (GTP-binding pr 100.0 1.2E-33 4E-38 202.2 21.3 163 12-176 2-168 (170)
32 2il1_A RAB12; G-protein, GDP, 100.0 8.8E-34 3E-38 207.5 20.3 169 7-177 20-190 (192)
33 3reg_A RHO-like small GTPase; 100.0 3.5E-33 1.2E-37 204.5 23.2 168 10-180 20-191 (194)
34 3q85_A GTP-binding protein REM 100.0 1.6E-33 5.4E-38 201.7 20.8 165 13-178 2-168 (169)
35 1z06_A RAS-related protein RAB 100.0 1.2E-33 4E-38 206.2 20.5 170 7-177 14-188 (189)
36 1g16_A RAS-related protein SEC 100.0 2E-33 6.9E-38 201.1 21.2 165 11-178 1-166 (170)
37 3oes_A GTPase rhebl1; small GT 100.0 8.1E-34 2.8E-38 209.1 19.5 169 11-181 22-191 (201)
38 3cbq_A GTP-binding protein REM 100.0 1.2E-33 4.2E-38 207.4 20.3 171 9-180 19-191 (195)
39 1z2a_A RAS-related protein RAB 100.0 2.2E-33 7.7E-38 200.5 21.1 164 11-177 3-167 (168)
40 2o52_A RAS-related protein RAB 100.0 1.3E-33 4.4E-38 208.0 20.3 169 10-180 22-191 (200)
41 2gf0_A GTP-binding protein DI- 100.0 9.2E-34 3.1E-38 208.1 19.4 169 9-180 4-174 (199)
42 2y8e_A RAB-protein 6, GH09086P 100.0 2.4E-33 8.2E-38 202.3 21.1 166 9-176 10-176 (179)
43 3q3j_B RHO-related GTP-binding 100.0 1.3E-33 4.5E-38 210.1 20.2 171 10-183 24-209 (214)
44 1c1y_A RAS-related protein RAP 100.0 4.6E-33 1.6E-37 198.7 21.7 163 12-176 2-166 (167)
45 1u8z_A RAS-related protein RAL 100.0 4.6E-33 1.6E-37 198.6 21.6 164 12-177 3-167 (168)
46 3c5c_A RAS-like protein 12; GD 100.0 3.7E-33 1.3E-37 203.4 21.2 165 10-177 18-186 (187)
47 2a9k_A RAS-related protein RAL 100.0 4.3E-33 1.5E-37 202.3 21.4 171 7-179 12-183 (187)
48 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.3E-32 4.6E-37 198.3 23.7 168 9-178 3-175 (177)
49 3cph_A RAS-related protein SEC 100.0 4.7E-33 1.6E-37 206.5 21.9 168 9-179 16-184 (213)
50 3dz8_A RAS-related protein RAB 100.0 1.5E-34 5.2E-39 211.4 13.6 170 8-179 18-188 (191)
51 2p5s_A RAS and EF-hand domain 100.0 1.7E-33 5.9E-38 207.1 19.2 168 8-177 23-197 (199)
52 2hxs_A RAB-26, RAS-related pro 100.0 2E-33 6.8E-38 202.8 18.8 169 10-179 3-175 (178)
53 3ihw_A Centg3; RAS, centaurin, 100.0 9.1E-33 3.1E-37 200.9 22.2 163 10-180 17-183 (184)
54 1kao_A RAP2A; GTP-binding prot 100.0 5.3E-33 1.8E-37 198.1 20.4 164 12-177 2-166 (167)
55 2f7s_A C25KG, RAS-related prot 100.0 1.1E-33 3.7E-38 210.7 17.3 174 6-180 18-202 (217)
56 2atx_A Small GTP binding prote 100.0 1.3E-32 4.6E-37 201.4 22.7 169 6-177 11-193 (194)
57 2j0v_A RAC-like GTP-binding pr 100.0 2.4E-33 8.1E-38 208.2 18.9 170 11-183 7-186 (212)
58 2g3y_A GTP-binding protein GEM 100.0 3.8E-33 1.3E-37 206.9 19.5 168 9-177 33-203 (211)
59 2iwr_A Centaurin gamma 1; ANK 100.0 2.4E-32 8.2E-37 197.3 22.3 163 11-180 5-172 (178)
60 2atv_A RERG, RAS-like estrogen 100.0 1.2E-32 4.3E-37 202.0 20.6 167 10-179 25-193 (196)
61 1m7b_A RND3/RHOE small GTP-bin 100.0 1.3E-32 4.3E-37 200.0 20.1 165 10-177 4-183 (184)
62 2q3h_A RAS homolog gene family 100.0 1.7E-32 5.7E-37 201.9 20.8 168 9-179 16-197 (201)
63 1mh1_A RAC1; GTP-binding, GTPa 100.0 3E-32 1E-36 197.8 20.7 166 11-179 3-182 (186)
64 4djt_A GTP-binding nuclear pro 100.0 6.4E-33 2.2E-37 206.7 17.0 177 7-185 5-183 (218)
65 2j1l_A RHO-related GTP-binding 100.0 2.7E-32 9.4E-37 202.9 20.3 167 11-180 32-212 (214)
66 3con_A GTPase NRAS; structural 100.0 1.1E-31 3.8E-36 195.8 22.9 167 9-178 17-184 (190)
67 1ky3_A GTP-binding protein YPT 100.0 1.5E-32 5.2E-37 198.6 18.1 168 10-178 5-179 (182)
68 3clv_A RAB5 protein, putative; 100.0 8.1E-32 2.8E-36 198.3 22.3 162 11-177 5-204 (208)
69 1gwn_A RHO-related GTP-binding 100.0 3E-32 1E-36 201.5 19.9 165 10-177 25-204 (205)
70 2ce2_X GTPase HRAS; signaling 100.0 2E-31 6.7E-36 189.7 23.4 162 13-177 3-165 (166)
71 2gco_A H9, RHO-related GTP-bin 100.0 1.2E-31 4E-36 197.6 22.5 164 11-177 23-200 (201)
72 2erx_A GTP-binding protein DI- 100.0 5.1E-32 1.8E-36 194.0 19.4 164 12-177 2-167 (172)
73 3gj0_A GTP-binding nuclear pro 100.0 9.6E-33 3.3E-37 206.3 16.2 175 5-184 7-182 (221)
74 2fv8_A H6, RHO-related GTP-bin 100.0 2E-31 6.9E-36 197.2 22.5 165 11-178 23-201 (207)
75 2cjw_A GTP-binding protein GEM 100.0 1.4E-31 4.7E-36 196.0 20.8 167 11-178 4-173 (192)
76 3t1o_A Gliding protein MGLA; G 100.0 1.4E-32 4.9E-37 201.3 14.2 169 6-179 7-194 (198)
77 2yc2_C IFT27, small RAB-relate 100.0 1.3E-32 4.4E-37 203.2 14.0 169 11-180 18-195 (208)
78 4gzl_A RAS-related C3 botulinu 100.0 1.1E-31 3.7E-36 198.3 17.4 162 11-175 28-203 (204)
79 3bwd_D RAC-like GTP-binding pr 100.0 1.4E-32 4.9E-37 198.9 12.4 164 11-177 6-181 (182)
80 3l0i_B RAS-related protein RAB 100.0 5.5E-34 1.9E-38 209.7 4.8 167 10-178 30-197 (199)
81 1upt_A ARL1, ADP-ribosylation 100.0 1.4E-31 4.8E-36 191.8 15.0 161 11-178 5-170 (171)
82 4bas_A ADP-ribosylation factor 100.0 1.7E-31 5.8E-36 196.0 14.8 168 6-179 10-191 (199)
83 2f9l_A RAB11B, member RAS onco 100.0 8.1E-30 2.8E-34 187.5 23.0 167 11-179 3-170 (199)
84 1r8s_A ADP-ribosylation factor 100.0 5.1E-32 1.7E-36 192.9 10.7 157 14-177 1-162 (164)
85 1m2o_B GTP-binding protein SAR 100.0 1.5E-30 5.2E-35 190.1 18.3 157 11-174 21-189 (190)
86 1f6b_A SAR1; gtpases, N-termin 100.0 6.8E-31 2.3E-35 193.2 15.9 157 11-174 23-196 (198)
87 1zd9_A ADP-ribosylation factor 100.0 2.8E-31 9.6E-36 193.6 11.5 160 11-177 20-185 (188)
88 2x77_A ADP-ribosylation factor 100.0 1E-31 3.6E-36 195.8 8.2 161 11-178 20-185 (189)
89 2b6h_A ADP-ribosylation factor 100.0 1.6E-31 5.4E-36 195.6 9.2 160 11-177 27-191 (192)
90 1ksh_A ARF-like protein 2; sma 100.0 8.1E-30 2.8E-34 185.3 17.9 161 11-178 16-181 (186)
91 1fzq_A ADP-ribosylation factor 100.0 4.1E-31 1.4E-35 191.7 10.5 161 11-178 14-179 (181)
92 1zj6_A ADP-ribosylation factor 100.0 5.4E-30 1.8E-34 186.5 16.5 164 11-181 14-182 (187)
93 1oix_A RAS-related protein RAB 100.0 2.4E-28 8.2E-33 178.6 23.4 165 9-175 25-190 (191)
94 2h17_A ADP-ribosylation factor 100.0 3.7E-30 1.3E-34 186.5 13.3 158 10-174 18-180 (181)
95 2h57_A ADP-ribosylation factor 100.0 2.9E-29 9.8E-34 183.1 17.8 160 11-177 19-187 (190)
96 2wkq_A NPH1-1, RAS-related C3 100.0 8.2E-29 2.8E-33 195.3 20.9 164 12-178 154-331 (332)
97 3llu_A RAS-related GTP-binding 100.0 4.2E-30 1.4E-34 188.6 11.4 164 8-175 15-195 (196)
98 1moz_A ARL1, ADP-ribosylation 100.0 2.2E-30 7.6E-35 187.6 9.4 160 11-177 16-180 (183)
99 2zej_A Dardarin, leucine-rich 100.0 7.3E-30 2.5E-34 185.5 10.3 164 13-179 2-180 (184)
100 3th5_A RAS-related C3 botulinu 99.9 8.2E-32 2.8E-36 198.8 0.0 162 11-175 28-203 (204)
101 2fh5_B SR-beta, signal recogni 100.0 2.5E-29 8.6E-34 186.7 11.9 161 11-174 5-213 (214)
102 3o47_A ADP-ribosylation factor 100.0 1.2E-29 4E-34 200.0 9.2 160 12-178 164-328 (329)
103 3lvq_E ARF-GAP with SH3 domain 100.0 1.5E-28 5.2E-33 203.8 12.6 165 11-182 320-489 (497)
104 2wji_A Ferrous iron transport 100.0 7.4E-28 2.5E-32 171.9 13.7 152 13-175 3-163 (165)
105 3iev_A GTP-binding protein ERA 100.0 1.1E-27 3.6E-32 187.3 15.0 173 8-185 5-190 (308)
106 3c5h_A Glucocorticoid receptor 100.0 6.5E-29 2.2E-33 189.4 7.7 167 7-176 13-254 (255)
107 2qu8_A Putative nucleolar GTP- 100.0 9.3E-28 3.2E-32 180.1 13.8 168 11-182 27-210 (228)
108 2lkc_A Translation initiation 100.0 2.2E-27 7.6E-32 170.9 15.0 160 9-179 4-173 (178)
109 3r7w_A Gtpase1, GTP-binding pr 100.0 1.2E-27 4E-32 187.0 14.0 167 12-183 2-187 (307)
110 1svi_A GTP-binding protein YSX 99.9 2.4E-27 8.3E-32 173.3 11.8 158 10-176 20-194 (195)
111 2wjg_A FEOB, ferrous iron tran 99.9 1.3E-26 4.4E-31 168.5 14.2 158 11-179 5-171 (188)
112 3r7w_B Gtpase2, GTP-binding pr 99.9 2.7E-28 9.3E-33 189.5 5.4 163 15-185 1-182 (331)
113 2cxx_A Probable GTP-binding pr 99.9 1.6E-27 5.3E-32 173.5 9.0 158 14-180 2-187 (190)
114 2dyk_A GTP-binding protein; GT 99.9 3.6E-27 1.2E-31 167.1 9.8 149 14-175 2-160 (161)
115 3a1s_A Iron(II) transport prot 99.9 1.3E-26 4.6E-31 176.7 12.2 155 11-176 3-166 (258)
116 3dpu_A RAB family protein; roc 99.9 4.4E-27 1.5E-31 196.5 10.2 165 10-180 38-211 (535)
117 3pqc_A Probable GTP-binding pr 99.9 3.9E-26 1.3E-30 166.6 12.4 162 7-177 17-194 (195)
118 3b1v_A Ferrous iron uptake tra 99.9 1.5E-26 5.1E-31 177.5 9.9 154 12-176 2-163 (272)
119 2gj8_A MNME, tRNA modification 99.9 5.9E-27 2E-31 168.4 7.0 153 12-176 3-165 (172)
120 1wf3_A GTP-binding protein; GT 99.9 7.2E-26 2.5E-30 176.1 11.4 167 11-184 5-180 (301)
121 4dhe_A Probable GTP-binding pr 99.9 6.8E-26 2.3E-30 169.1 8.9 164 10-179 26-213 (223)
122 3iby_A Ferrous iron transport 99.9 3E-25 1E-29 169.0 12.4 149 15-174 3-164 (256)
123 3k53_A Ferrous iron transport 99.9 1.3E-24 4.5E-29 167.0 14.2 158 12-179 2-168 (271)
124 3i8s_A Ferrous iron transport 99.9 1.3E-25 4.6E-30 172.7 7.0 155 13-178 3-170 (274)
125 1nrj_B SR-beta, signal recogni 99.9 1E-25 3.4E-30 167.7 5.8 149 6-163 5-170 (218)
126 3gee_A MNME, tRNA modification 99.9 6.2E-25 2.1E-29 180.1 10.8 156 12-176 232-397 (476)
127 2hjg_A GTP-binding protein ENG 99.9 3.2E-25 1.1E-29 181.0 7.2 161 11-179 173-351 (436)
128 4dcu_A GTP-binding protein ENG 99.9 8.6E-25 3E-29 179.3 7.6 162 11-180 193-372 (456)
129 1ega_A Protein (GTP-binding pr 99.9 3.7E-24 1.3E-28 166.6 10.1 167 11-184 6-182 (301)
130 3qq5_A Small GTP-binding prote 99.9 2.3E-25 8E-30 179.9 2.7 159 9-178 30-197 (423)
131 1xzp_A Probable tRNA modificat 99.9 7.8E-24 2.7E-28 173.8 9.3 151 13-176 243-404 (482)
132 1lnz_A SPO0B-associated GTP-bi 99.9 9.1E-24 3.1E-28 166.6 8.9 160 15-180 160-333 (342)
133 1mky_A Probable GTP-binding pr 99.9 1.2E-23 4.2E-28 171.8 9.8 152 15-178 3-167 (439)
134 2e87_A Hypothetical protein PH 99.9 1.4E-22 4.7E-27 161.4 15.3 163 11-180 165-339 (357)
135 3cb4_D GTP-binding protein LEP 99.9 6.2E-23 2.1E-27 172.1 13.8 159 11-177 2-182 (599)
136 2hjg_A GTP-binding protein ENG 99.9 8.9E-24 3E-28 172.4 8.2 154 14-178 4-166 (436)
137 3sjy_A Translation initiation 99.9 7.8E-23 2.7E-27 165.3 13.2 165 9-177 4-192 (403)
138 2ywe_A GTP-binding protein LEP 99.9 1.6E-22 5.3E-27 169.4 14.3 159 11-177 4-184 (600)
139 2xtp_A GTPase IMAP family memb 99.9 1.1E-22 3.6E-27 155.4 10.2 165 9-179 18-210 (260)
140 3lxx_A GTPase IMAP family memb 99.9 1.5E-22 5.3E-27 152.7 11.0 164 10-179 26-216 (239)
141 3lxw_A GTPase IMAP family memb 99.9 2.4E-22 8.2E-27 152.3 11.5 168 10-180 18-211 (247)
142 3j2k_7 ERF3, eukaryotic polype 99.9 9.6E-22 3.3E-26 160.3 15.0 157 11-169 15-217 (439)
143 1cip_A Protein (guanine nucleo 99.9 1.3E-22 4.5E-27 160.5 9.2 118 60-178 192-345 (353)
144 1mky_A Probable GTP-binding pr 99.9 2.9E-22 9.8E-27 163.7 11.0 160 11-178 178-356 (439)
145 1s0u_A EIF-2-gamma, translatio 99.9 1.2E-21 4.2E-26 158.6 14.5 160 10-177 5-198 (408)
146 3p26_A Elongation factor 1 alp 99.9 8.7E-23 3E-27 168.5 7.7 152 12-166 32-227 (483)
147 3geh_A MNME, tRNA modification 99.9 3.8E-23 1.3E-27 169.0 5.2 154 12-179 223-386 (462)
148 1wb1_A Translation elongation 99.9 3.8E-22 1.3E-26 164.3 11.2 155 11-176 17-188 (482)
149 1kk1_A EIF2gamma; initiation o 99.9 1.7E-21 5.9E-26 157.8 13.1 160 9-176 6-199 (410)
150 3tr5_A RF-3, peptide chain rel 99.9 2.4E-22 8.2E-27 166.7 7.9 117 11-133 11-148 (528)
151 3t5d_A Septin-7; GTP-binding p 99.9 4.4E-22 1.5E-26 153.1 8.5 160 10-175 5-202 (274)
152 3izy_P Translation initiation 99.9 8.4E-24 2.9E-28 175.0 -1.6 159 11-176 2-167 (537)
153 3ohm_A Guanine nucleotide-bind 99.9 5.7E-22 2E-26 154.8 8.7 119 59-178 165-319 (327)
154 2qag_A Septin-2, protein NEDD5 99.9 2.3E-22 7.9E-27 160.1 6.2 163 11-180 35-236 (361)
155 1zun_B Sulfate adenylate trans 99.9 4.1E-21 1.4E-25 156.6 13.6 154 10-168 21-215 (434)
156 4dcu_A GTP-binding protein ENG 99.9 1.9E-22 6.5E-27 165.5 5.6 155 12-177 22-185 (456)
157 1d2e_A Elongation factor TU (E 99.9 7.9E-22 2.7E-26 159.1 9.0 159 12-176 2-194 (397)
158 2qtf_A Protein HFLX, GTP-bindi 99.9 1.2E-20 4E-25 150.2 15.3 163 13-180 178-357 (364)
159 2c78_A Elongation factor TU-A; 99.9 7.4E-22 2.5E-26 159.7 8.0 160 11-176 9-211 (405)
160 2xtz_A Guanine nucleotide-bind 99.9 5.2E-21 1.8E-25 151.3 12.0 118 59-177 181-345 (354)
161 2ged_A SR-beta, signal recogni 99.9 2E-21 6.9E-26 141.6 9.0 123 10-137 45-174 (193)
162 2elf_A Protein translation elo 99.9 1.8E-21 6.2E-26 155.2 9.4 146 15-177 23-180 (370)
163 1jny_A EF-1-alpha, elongation 99.8 8.6E-22 2.9E-26 160.6 6.8 156 12-169 5-205 (435)
164 1g7s_A Translation initiation 99.8 1.1E-20 3.7E-25 158.6 13.4 157 11-176 3-217 (594)
165 1zcb_A G alpha I/13; GTP-bindi 99.8 4.7E-21 1.6E-25 152.1 9.2 118 60-178 200-354 (362)
166 1r5b_A Eukaryotic peptide chai 99.8 1E-21 3.5E-26 161.3 4.9 156 11-168 41-243 (467)
167 3izq_1 HBS1P, elongation facto 99.8 8.3E-22 2.8E-26 166.2 4.2 155 12-167 166-362 (611)
168 4fid_A G protein alpha subunit 99.8 5E-21 1.7E-25 150.0 7.8 121 56-177 156-328 (340)
169 1zo1_I IF2, translation initia 99.8 2.5E-22 8.5E-27 165.0 -1.0 155 11-173 2-163 (501)
170 2aka_B Dynamin-1; fusion prote 99.8 7E-21 2.4E-25 148.0 6.8 160 9-173 22-249 (299)
171 3avx_A Elongation factor TS, e 99.8 1.1E-20 3.8E-25 165.8 8.5 160 11-176 294-485 (1289)
172 3def_A T7I23.11 protein; chlor 99.8 7.3E-20 2.5E-24 139.8 11.6 127 12-139 35-171 (262)
173 1f60_A Elongation factor EEF1A 99.8 7E-21 2.4E-25 156.0 5.6 152 11-167 5-202 (458)
174 2h5e_A Peptide chain release f 99.8 2.2E-19 7.4E-24 149.2 13.6 117 11-133 11-148 (529)
175 1pui_A ENGB, probable GTP-bind 99.8 1.3E-19 4.3E-24 133.8 10.8 159 10-177 23-199 (210)
176 2dy1_A Elongation factor G; tr 99.8 2.4E-19 8.1E-24 152.9 13.3 118 9-132 5-139 (665)
177 1dar_A EF-G, elongation factor 99.8 3.4E-19 1.2E-23 152.4 14.3 119 9-133 8-143 (691)
178 3mca_A HBS1, elongation factor 99.8 1.1E-21 3.6E-26 165.1 -1.3 150 11-165 175-371 (592)
179 1h65_A Chloroplast outer envel 99.8 3.4E-19 1.2E-23 136.7 11.3 127 12-139 38-174 (270)
180 2j69_A Bacterial dynamin-like 99.8 8.9E-19 3E-23 149.9 13.0 164 12-180 68-328 (695)
181 2rdo_7 EF-G, elongation factor 99.8 7.5E-18 2.6E-22 144.3 17.2 119 9-133 6-148 (704)
182 1udx_A The GTP-binding protein 99.8 2.3E-18 7.8E-23 138.8 12.5 161 15-180 159-328 (416)
183 1jwy_B Dynamin A GTPase domain 99.8 1.5E-18 5.1E-23 135.8 11.0 165 11-180 22-265 (315)
184 2xex_A Elongation factor G; GT 99.8 4E-18 1.4E-22 145.9 14.0 118 10-133 7-141 (693)
185 1wxq_A GTP-binding protein; st 99.8 1.3E-19 4.5E-24 145.6 2.1 83 14-97 1-114 (397)
186 2qnr_A Septin-2, protein NEDD5 99.7 9.1E-19 3.1E-23 136.1 6.1 163 11-180 16-217 (301)
187 3t34_A Dynamin-related protein 99.7 1.4E-18 4.6E-23 138.6 7.0 108 61-172 136-256 (360)
188 3vqt_A RF-3, peptide chain rel 99.7 2.7E-17 9.3E-22 137.2 11.9 117 11-133 29-166 (548)
189 2qag_C Septin-7; cell cycle, c 99.7 6.8E-18 2.3E-22 136.1 7.8 159 11-175 29-225 (418)
190 1u0l_A Probable GTPase ENGC; p 99.7 1.9E-18 6.6E-23 134.4 4.0 132 28-172 32-168 (301)
191 1azs_C GS-alpha; complex (lyas 99.7 3.6E-17 1.2E-21 130.9 10.2 118 60-178 216-386 (402)
192 3p32_A Probable GTPase RV1496/ 99.7 3.2E-17 1.1E-21 130.3 6.9 104 60-177 171-284 (355)
193 2x2e_A Dynamin-1; nitration, h 99.7 3.1E-18 1.1E-22 136.1 -1.0 158 11-173 29-254 (353)
194 1n0u_A EF-2, elongation factor 99.7 2.8E-16 9.6E-21 137.0 10.8 117 10-132 16-163 (842)
195 2wsm_A Hydrogenase expression/ 99.7 5.7E-17 2E-21 120.5 4.8 154 12-178 29-215 (221)
196 1jal_A YCHF protein; nucleotid 99.6 5.6E-15 1.9E-19 116.8 15.3 81 14-96 3-108 (363)
197 2hf9_A Probable hydrogenase ni 99.6 3.6E-18 1.2E-22 127.4 -3.9 153 12-177 37-224 (226)
198 2qpt_A EH domain-containing pr 99.6 7.4E-16 2.5E-20 128.7 9.0 122 9-135 61-234 (550)
199 3j25_A Tetracycline resistance 99.6 1.1E-16 3.9E-21 135.8 0.7 114 14-133 3-133 (638)
200 4fn5_A EF-G 1, elongation fact 99.6 1.8E-14 6.2E-19 123.8 13.9 117 10-132 10-150 (709)
201 4a9a_A Ribosome-interacting GT 99.6 1.2E-14 4.1E-19 115.5 11.4 152 13-169 72-240 (376)
202 2www_A Methylmalonic aciduria 99.6 1E-14 3.6E-19 115.5 10.0 103 60-176 166-278 (349)
203 2dby_A GTP-binding protein; GD 99.6 9.5E-15 3.2E-19 116.0 9.2 153 14-169 2-254 (368)
204 2p67_A LAO/AO transport system 99.6 2.3E-15 8E-20 118.9 5.2 104 60-176 148-260 (341)
205 1yrb_A ATP(GTP)binding protein 99.5 3.7E-15 1.3E-19 113.5 4.8 115 61-177 109-257 (262)
206 3zvr_A Dynamin-1; hydrolase, D 99.5 6.4E-14 2.2E-18 119.9 9.0 159 11-174 49-275 (772)
207 2yv5_A YJEQ protein; hydrolase 99.4 2.4E-13 8.1E-18 105.7 8.2 97 71-172 66-164 (302)
208 2qm8_A GTPase/ATPase; G protei 99.4 6.3E-14 2.2E-18 110.5 4.2 104 60-176 147-260 (337)
209 3l82_B F-box only protein 4; T 99.3 1.2E-12 4.2E-17 94.8 5.6 174 2-178 5-224 (227)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 2.3E-12 8E-17 102.8 5.0 88 11-98 20-130 (396)
211 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 2.2E-10 7.5E-15 91.6 15.0 86 11-96 18-127 (392)
212 3l2o_B F-box only protein 4; s 99.2 2E-11 6.7E-16 92.7 6.0 108 68-178 194-309 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.1 2.3E-11 7.8E-16 97.0 1.7 140 14-163 163-317 (369)
214 3h2y_A GTPase family protein; 99.0 5.3E-10 1.8E-14 89.0 7.5 97 70-175 55-158 (368)
215 2j37_W Signal recognition part 99.0 7.9E-10 2.7E-14 91.1 7.0 151 11-174 99-310 (504)
216 3h2y_A GTPase family protein; 98.9 1.2E-10 4E-15 92.8 0.4 135 14-158 161-311 (368)
217 1tq4_A IIGP1, interferon-induc 98.9 1.2E-08 4.1E-13 82.1 11.8 159 13-182 69-258 (413)
218 2qag_B Septin-6, protein NEDD5 98.9 2.3E-09 7.8E-14 86.4 7.5 140 13-159 42-218 (427)
219 3ec1_A YQEH GTPase; atnos1, at 98.9 1.3E-09 4.4E-14 86.9 5.2 97 70-175 57-160 (369)
220 1puj_A YLQF, conserved hypothe 98.8 3.7E-09 1.3E-13 81.2 5.2 59 11-72 118-176 (282)
221 3sop_A Neuronal-specific septi 98.7 1.6E-08 5.5E-13 77.1 6.5 136 13-155 2-178 (270)
222 3cnl_A YLQF, putative uncharac 98.7 3.3E-09 1.1E-13 80.6 2.5 57 14-73 100-156 (262)
223 1puj_A YLQF, conserved hypothe 98.7 1.8E-08 6.2E-13 77.3 6.2 101 67-177 5-106 (282)
224 3dm5_A SRP54, signal recogniti 98.6 1E-07 3.5E-12 77.1 7.8 135 12-158 99-274 (443)
225 1t9h_A YLOQ, probable GTPase E 98.4 1.4E-07 4.8E-12 73.0 3.4 91 75-169 77-169 (307)
226 3cnl_A YLQF, putative uncharac 98.4 2.1E-07 7.3E-12 70.6 3.4 93 68-173 4-97 (262)
227 2v3c_C SRP54, signal recogniti 98.3 2.9E-07 9.9E-12 74.7 3.8 84 60-156 180-271 (432)
228 3kl4_A SRP54, signal recogniti 98.3 7.6E-07 2.6E-11 72.0 5.8 87 60-158 179-273 (433)
229 1f5n_A Interferon-induced guan 98.3 4.6E-07 1.6E-11 76.0 4.5 63 11-73 36-103 (592)
230 1j8m_F SRP54, signal recogniti 98.2 2.2E-06 7.6E-11 66.1 5.5 92 60-166 180-280 (297)
231 3szr_A Interferon-induced GTP- 98.0 6.1E-06 2.1E-10 69.8 5.6 22 16-37 48-69 (608)
232 3e70_C DPA, signal recognition 98.0 1.2E-05 4E-10 62.9 6.6 91 62-166 213-309 (328)
233 2rcn_A Probable GTPase ENGC; Y 97.9 2.2E-05 7.5E-10 62.0 6.2 85 81-170 127-212 (358)
234 3q5d_A Atlastin-1; G protein, 97.8 1.8E-05 6.3E-10 64.2 5.2 26 11-36 65-90 (447)
235 1bif_A 6-phosphofructo-2-kinas 97.7 6.5E-07 2.2E-11 73.5 -4.7 99 12-112 38-146 (469)
236 2xxa_A Signal recognition part 97.6 0.00031 1.1E-08 56.9 8.7 84 60-156 183-273 (433)
237 1ye8_A Protein THEP1, hypothet 97.3 0.00013 4.6E-09 51.8 3.4 23 15-37 2-24 (178)
238 2ffh_A Protein (FFH); SRP54, s 97.3 0.001 3.6E-08 53.7 8.3 86 60-157 180-271 (425)
239 1kgd_A CASK, peripheral plasma 97.2 0.00019 6.5E-09 51.0 3.2 22 15-36 7-28 (180)
240 1t9h_A YLOQ, probable GTPase E 97.2 0.00015 5.2E-09 56.0 2.5 23 15-37 175-197 (307)
241 1lvg_A Guanylate kinase, GMP k 97.2 0.00023 8E-09 51.4 3.2 22 15-36 6-27 (198)
242 2yv5_A YJEQ protein; hydrolase 97.1 0.0011 3.6E-08 51.2 6.7 22 15-37 167-188 (302)
243 3tr0_A Guanylate kinase, GMP k 97.1 0.00033 1.1E-08 50.5 3.2 22 15-36 9-30 (205)
244 3a00_A Guanylate kinase, GMP k 97.1 0.00033 1.1E-08 50.0 3.1 21 16-36 4-24 (186)
245 1zp6_A Hypothetical protein AT 97.1 0.00034 1.2E-08 49.9 3.1 23 14-36 10-32 (191)
246 3ney_A 55 kDa erythrocyte memb 97.0 0.00045 1.5E-08 49.9 3.2 23 15-37 21-43 (197)
247 1znw_A Guanylate kinase, GMP k 97.0 0.00043 1.5E-08 50.2 3.1 23 15-37 22-44 (207)
248 1z6g_A Guanylate kinase; struc 97.0 0.00045 1.5E-08 50.7 3.1 23 15-37 25-47 (218)
249 1s96_A Guanylate kinase, GMP k 97.0 0.00047 1.6E-08 50.7 3.2 23 15-37 18-40 (219)
250 4gp7_A Metallophosphoesterase; 96.9 0.00039 1.3E-08 48.9 2.6 20 15-34 11-30 (171)
251 3tau_A Guanylate kinase, GMP k 96.9 0.0005 1.7E-08 50.0 3.2 23 15-37 10-32 (208)
252 3c8u_A Fructokinase; YP_612366 96.9 0.00048 1.6E-08 50.0 2.9 26 11-36 20-45 (208)
253 1ex7_A Guanylate kinase; subst 96.9 0.00061 2.1E-08 48.7 3.2 21 16-36 4-24 (186)
254 1kag_A SKI, shikimate kinase I 96.8 0.0007 2.4E-08 47.4 3.2 22 15-36 6-27 (173)
255 3kb2_A SPBC2 prophage-derived 96.8 0.00081 2.8E-08 46.9 3.3 22 15-36 3-24 (173)
256 2bdt_A BH3686; alpha-beta prot 96.8 0.00074 2.5E-08 48.1 3.1 21 15-35 4-24 (189)
257 2qor_A Guanylate kinase; phosp 96.8 0.00074 2.5E-08 48.8 3.2 23 15-37 14-36 (204)
258 2j41_A Guanylate kinase; GMP, 96.8 0.00074 2.5E-08 48.7 3.1 24 14-37 7-30 (207)
259 1htw_A HI0065; nucleotide-bind 96.8 0.00081 2.8E-08 46.8 3.1 23 15-37 35-57 (158)
260 3lw7_A Adenylate kinase relate 96.8 0.00077 2.7E-08 47.0 3.0 19 15-33 3-21 (179)
261 1ly1_A Polynucleotide kinase; 96.8 0.00096 3.3E-08 46.9 3.5 22 14-35 3-24 (181)
262 2rcn_A Probable GTPase ENGC; Y 96.8 0.0008 2.7E-08 53.1 3.3 24 15-38 217-240 (358)
263 4ido_A Atlastin-1; GTPase, GTP 96.8 0.0025 8.4E-08 51.7 6.1 64 11-74 65-153 (457)
264 3tif_A Uncharacterized ABC tra 96.8 0.00076 2.6E-08 50.1 3.0 23 15-37 33-55 (235)
265 3asz_A Uridine kinase; cytidin 96.8 0.00092 3.1E-08 48.5 3.4 25 12-36 5-29 (211)
266 4eun_A Thermoresistant glucoki 96.7 0.00089 3.1E-08 48.2 3.2 23 14-36 30-52 (200)
267 3ec2_A DNA replication protein 96.7 0.00086 3E-08 47.4 2.9 25 13-37 38-62 (180)
268 2i3b_A HCR-ntpase, human cance 96.7 0.00084 2.9E-08 48.1 2.8 22 15-36 3-24 (189)
269 2bbw_A Adenylate kinase 4, AK4 96.7 0.001 3.4E-08 49.6 3.4 21 14-34 28-48 (246)
270 3aez_A Pantothenate kinase; tr 96.7 0.0015 5.1E-08 50.6 4.3 27 10-36 87-113 (312)
271 2pcj_A ABC transporter, lipopr 96.7 0.00091 3.1E-08 49.3 3.0 23 15-37 32-54 (224)
272 1knq_A Gluconate kinase; ALFA/ 96.7 0.0012 4E-08 46.4 3.4 22 14-35 9-30 (175)
273 3fb4_A Adenylate kinase; psych 96.7 0.00092 3.1E-08 48.6 2.9 21 15-35 2-22 (216)
274 3vaa_A Shikimate kinase, SK; s 96.7 0.0012 4.1E-08 47.5 3.4 22 14-35 26-47 (199)
275 3dl0_A Adenylate kinase; phosp 96.7 0.00095 3.2E-08 48.6 2.9 21 15-35 2-22 (216)
276 2onk_A Molybdate/tungstate ABC 96.7 0.0011 3.7E-08 49.4 3.2 23 15-37 26-48 (240)
277 1jjv_A Dephospho-COA kinase; P 96.6 0.0014 4.7E-08 47.3 3.6 22 14-35 3-24 (206)
278 3t61_A Gluconokinase; PSI-biol 96.6 0.0011 3.9E-08 47.7 3.1 22 15-36 20-41 (202)
279 1np6_A Molybdopterin-guanine d 96.6 0.0012 4.2E-08 46.6 3.2 22 15-36 8-29 (174)
280 1ukz_A Uridylate kinase; trans 96.6 0.0016 5.6E-08 46.8 3.9 24 12-35 14-37 (203)
281 2if2_A Dephospho-COA kinase; a 96.6 0.0013 4.5E-08 47.3 3.4 21 15-35 3-23 (204)
282 1qhx_A CPT, protein (chloramph 96.6 0.0012 4.1E-08 46.4 3.0 22 15-36 5-26 (178)
283 2eyu_A Twitching motility prot 96.6 0.0012 4E-08 49.9 3.1 23 14-36 26-48 (261)
284 1nks_A Adenylate kinase; therm 96.6 0.0014 4.7E-08 46.6 3.4 21 15-35 3-23 (194)
285 1b0u_A Histidine permease; ABC 96.6 0.0011 3.9E-08 50.0 3.0 23 15-37 34-56 (262)
286 1sgw_A Putative ABC transporte 96.6 0.0012 4.1E-08 48.3 3.0 23 15-37 37-59 (214)
287 3gfo_A Cobalt import ATP-bindi 96.6 0.0012 4E-08 50.3 3.0 23 15-37 36-58 (275)
288 2cbz_A Multidrug resistance-as 96.6 0.0013 4.4E-08 48.9 3.2 23 15-37 33-55 (237)
289 3n70_A Transport activator; si 96.6 0.0087 3E-07 40.6 7.2 25 14-38 25-49 (145)
290 2v9p_A Replication protein E1; 96.6 0.0013 4.5E-08 50.7 3.3 23 15-37 128-150 (305)
291 1cke_A CK, MSSA, protein (cyti 96.6 0.0015 5E-08 47.9 3.4 22 14-35 6-27 (227)
292 2jaq_A Deoxyguanosine kinase; 96.6 0.0015 5.1E-08 46.9 3.4 21 15-35 2-22 (205)
293 2yvu_A Probable adenylyl-sulfa 96.6 0.0019 6.5E-08 45.8 3.9 26 11-36 11-36 (186)
294 1mv5_A LMRA, multidrug resista 96.6 0.0014 4.8E-08 48.9 3.3 23 15-37 30-52 (243)
295 3cm0_A Adenylate kinase; ATP-b 96.6 0.0018 6.1E-08 45.8 3.7 23 13-35 4-26 (186)
296 2qt1_A Nicotinamide riboside k 96.6 0.0019 6.4E-08 46.7 3.9 26 11-36 19-44 (207)
297 2ff7_A Alpha-hemolysin translo 96.6 0.0014 4.8E-08 49.0 3.2 23 15-37 37-59 (247)
298 1g6h_A High-affinity branched- 96.6 0.0013 4.4E-08 49.5 3.0 23 15-37 35-57 (257)
299 2cdn_A Adenylate kinase; phosp 96.6 0.0013 4.5E-08 47.3 3.0 25 11-35 18-42 (201)
300 3tlx_A Adenylate kinase 2; str 96.5 0.0016 5.4E-08 48.5 3.5 24 12-35 28-51 (243)
301 4g1u_C Hemin import ATP-bindin 96.5 0.0013 4.4E-08 49.8 2.9 23 15-37 39-61 (266)
302 2pze_A Cystic fibrosis transme 96.5 0.0015 5.3E-08 48.2 3.3 23 15-37 36-58 (229)
303 3trf_A Shikimate kinase, SK; a 96.5 0.0016 5.4E-08 46.1 3.2 22 14-35 6-27 (185)
304 1u0l_A Probable GTPase ENGC; p 96.5 0.0016 5.6E-08 50.1 3.5 24 15-38 171-194 (301)
305 2olj_A Amino acid ABC transpor 96.5 0.0014 4.8E-08 49.5 3.0 23 15-37 52-74 (263)
306 3uie_A Adenylyl-sulfate kinase 96.5 0.0015 5.2E-08 47.0 3.1 24 13-36 25-48 (200)
307 2rhm_A Putative kinase; P-loop 96.5 0.0017 5.7E-08 46.2 3.3 22 14-35 6-27 (193)
308 3b85_A Phosphate starvation-in 96.5 0.0012 4.3E-08 48.0 2.6 22 15-36 24-45 (208)
309 1vpl_A ABC transporter, ATP-bi 96.5 0.0015 5E-08 49.2 3.0 23 15-37 43-65 (256)
310 1ji0_A ABC transporter; ATP bi 96.5 0.0015 5E-08 48.7 3.0 23 15-37 34-56 (240)
311 4a74_A DNA repair and recombin 96.5 0.0016 5.3E-08 47.7 3.1 22 15-36 27-48 (231)
312 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0016 5.4E-08 48.8 3.1 22 15-36 31-52 (250)
313 1kht_A Adenylate kinase; phosp 96.5 0.0017 6E-08 46.0 3.2 22 14-35 4-25 (192)
314 3lnc_A Guanylate kinase, GMP k 96.5 0.00091 3.1E-08 49.3 1.8 22 15-36 29-51 (231)
315 2ghi_A Transport protein; mult 96.5 0.0016 5.6E-08 49.0 3.2 22 15-36 48-69 (260)
316 2ehv_A Hypothetical protein PH 96.5 0.0016 5.5E-08 48.3 3.1 20 15-34 32-51 (251)
317 1tev_A UMP-CMP kinase; ploop, 96.5 0.0019 6.6E-08 45.9 3.5 23 13-35 3-25 (196)
318 3iij_A Coilin-interacting nucl 96.5 0.0013 4.5E-08 46.4 2.5 23 13-35 11-33 (180)
319 2qi9_C Vitamin B12 import ATP- 96.5 0.0017 5.9E-08 48.6 3.3 23 15-37 28-50 (249)
320 3sr0_A Adenylate kinase; phosp 96.5 0.0019 6.5E-08 46.9 3.4 21 15-35 2-22 (206)
321 2zu0_C Probable ATP-dependent 96.5 0.0019 6.6E-08 48.9 3.4 22 15-36 48-69 (267)
322 2ihy_A ABC transporter, ATP-bi 96.5 0.0018 6.2E-08 49.4 3.3 23 15-37 49-71 (279)
323 2f1r_A Molybdopterin-guanine d 96.4 0.00099 3.4E-08 47.0 1.6 23 15-37 4-26 (171)
324 2ixe_A Antigen peptide transpo 96.4 0.0018 6.2E-08 49.1 3.2 23 15-37 47-69 (271)
325 2jeo_A Uridine-cytidine kinase 96.4 0.002 6.8E-08 48.0 3.3 24 12-35 24-47 (245)
326 1e4v_A Adenylate kinase; trans 96.4 0.0021 7.1E-08 46.8 3.3 21 15-35 2-22 (214)
327 2nq2_C Hypothetical ABC transp 96.4 0.0018 6.1E-08 48.6 3.0 23 15-37 33-55 (253)
328 1y63_A LMAJ004144AAA protein; 96.4 0.0021 7.1E-08 45.6 3.2 24 13-36 10-33 (184)
329 2yz2_A Putative ABC transporte 96.4 0.0018 6.2E-08 49.0 3.0 23 15-37 35-57 (266)
330 1jbk_A CLPB protein; beta barr 96.4 0.0023 8E-08 45.0 3.4 23 14-36 44-66 (195)
331 1ak2_A Adenylate kinase isoenz 96.4 0.0019 6.4E-08 47.7 3.0 24 12-35 15-38 (233)
332 1via_A Shikimate kinase; struc 96.4 0.0019 6.5E-08 45.4 2.8 21 15-35 6-26 (175)
333 2plr_A DTMP kinase, probable t 96.4 0.0024 8.3E-08 46.0 3.5 22 14-35 5-26 (213)
334 2x8a_A Nuclear valosin-contain 96.4 0.0021 7E-08 48.9 3.1 21 16-36 47-67 (274)
335 1lw7_A Transcriptional regulat 96.4 0.0024 8.1E-08 50.6 3.5 25 13-37 170-194 (365)
336 3tqc_A Pantothenate kinase; bi 96.4 0.0033 1.1E-07 48.9 4.2 25 11-35 90-114 (321)
337 2pjz_A Hypothetical protein ST 96.3 0.0023 7.7E-08 48.4 3.3 23 15-37 32-54 (263)
338 1zd8_A GTP:AMP phosphotransfer 96.3 0.0018 6.2E-08 47.5 2.7 22 14-35 8-29 (227)
339 2pt5_A Shikimate kinase, SK; a 96.3 0.0025 8.5E-08 44.3 3.2 21 15-35 2-22 (168)
340 2kjq_A DNAA-related protein; s 96.3 0.0017 5.9E-08 44.6 2.3 23 15-37 38-60 (149)
341 3co5_A Putative two-component 96.3 0.0062 2.1E-07 41.3 5.0 22 14-35 28-49 (143)
342 1gvn_B Zeta; postsegregational 96.3 0.0024 8.1E-08 48.9 3.2 24 12-35 32-55 (287)
343 1ixz_A ATP-dependent metallopr 96.3 0.0024 8.3E-08 47.7 3.2 22 16-37 52-73 (254)
344 3umf_A Adenylate kinase; rossm 96.3 0.0033 1.1E-07 46.0 3.8 21 15-35 31-51 (217)
345 1aky_A Adenylate kinase; ATP:A 96.3 0.0028 9.4E-08 46.3 3.4 22 14-35 5-26 (220)
346 3jvv_A Twitching mobility prot 96.3 0.0025 8.6E-08 50.3 3.4 22 15-36 125-146 (356)
347 1xjc_A MOBB protein homolog; s 96.3 0.0027 9.3E-08 44.6 3.2 22 15-36 6-27 (169)
348 1sq5_A Pantothenate kinase; P- 96.3 0.003 1E-07 48.8 3.7 26 11-36 78-103 (308)
349 2f6r_A COA synthase, bifunctio 96.3 0.004 1.4E-07 47.4 4.4 24 11-34 73-96 (281)
350 1uj2_A Uridine-cytidine kinase 96.3 0.0026 8.9E-08 47.6 3.2 25 11-35 20-44 (252)
351 3nh6_A ATP-binding cassette SU 96.3 0.0017 5.8E-08 50.1 2.2 23 15-37 82-104 (306)
352 1rz3_A Hypothetical protein rb 96.3 0.003 1E-07 45.5 3.4 25 11-35 20-44 (201)
353 2xb4_A Adenylate kinase; ATP-b 96.2 0.0025 8.4E-08 46.8 2.9 21 15-35 2-22 (223)
354 1odf_A YGR205W, hypothetical 3 96.2 0.0033 1.1E-07 48.1 3.7 25 11-35 29-53 (290)
355 3fvq_A Fe(3+) IONS import ATP- 96.2 0.0025 8.7E-08 50.2 3.1 24 15-38 32-55 (359)
356 2p5t_B PEZT; postsegregational 96.2 0.0024 8.1E-08 47.9 2.8 25 11-35 30-54 (253)
357 1rj9_A FTSY, signal recognitio 96.2 0.0027 9.3E-08 49.0 3.1 85 62-158 186-282 (304)
358 3be4_A Adenylate kinase; malar 96.2 0.0025 8.5E-08 46.5 2.8 23 13-35 5-27 (217)
359 2v54_A DTMP kinase, thymidylat 96.2 0.0035 1.2E-07 45.0 3.5 24 14-37 5-28 (204)
360 1uf9_A TT1252 protein; P-loop, 96.2 0.0034 1.2E-07 44.9 3.5 25 12-36 7-31 (203)
361 3tui_C Methionine import ATP-b 96.2 0.0028 9.7E-08 50.1 3.2 23 15-37 56-78 (366)
362 2bbs_A Cystic fibrosis transme 96.2 0.0029 9.9E-08 48.5 3.2 22 15-36 66-87 (290)
363 2wwf_A Thymidilate kinase, put 96.2 0.0029 1E-07 45.7 3.1 23 13-35 10-32 (212)
364 2ze6_A Isopentenyl transferase 96.2 0.003 1E-07 47.3 3.2 21 15-35 3-23 (253)
365 2c95_A Adenylate kinase 1; tra 96.2 0.0032 1.1E-07 44.8 3.2 22 14-35 10-31 (196)
366 2ewv_A Twitching motility prot 96.2 0.0031 1.1E-07 50.1 3.3 23 14-36 137-159 (372)
367 3b9q_A Chloroplast SRP recepto 96.2 0.0031 1.1E-07 48.6 3.2 24 12-35 99-122 (302)
368 2z0h_A DTMP kinase, thymidylat 96.2 0.0033 1.1E-07 44.8 3.1 22 15-36 2-23 (197)
369 2bwj_A Adenylate kinase 5; pho 96.2 0.0036 1.2E-07 44.7 3.4 22 14-35 13-34 (199)
370 2pbr_A DTMP kinase, thymidylat 96.1 0.0034 1.2E-07 44.6 3.2 21 15-35 2-22 (195)
371 1z47_A CYSA, putative ABC-tran 96.1 0.0031 1E-07 49.7 3.1 23 15-37 43-65 (355)
372 1zuh_A Shikimate kinase; alpha 96.1 0.0036 1.2E-07 43.5 3.2 21 15-35 9-29 (168)
373 2p65_A Hypothetical protein PF 96.1 0.0027 9.3E-08 44.5 2.6 23 14-36 44-66 (187)
374 1gtv_A TMK, thymidylate kinase 96.1 0.0014 4.7E-08 47.5 1.0 21 15-35 2-22 (214)
375 2yyz_A Sugar ABC transporter, 96.1 0.0032 1.1E-07 49.7 3.1 23 15-37 31-53 (359)
376 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0031 1.1E-07 49.2 3.0 23 15-37 173-195 (330)
377 1in4_A RUVB, holliday junction 96.1 0.0033 1.1E-07 49.1 3.1 23 15-37 53-75 (334)
378 2gza_A Type IV secretion syste 96.1 0.0031 1.1E-07 49.9 3.0 23 15-37 177-199 (361)
379 2it1_A 362AA long hypothetical 96.1 0.0034 1.2E-07 49.6 3.2 23 15-37 31-53 (362)
380 3rlf_A Maltose/maltodextrin im 96.1 0.0034 1.2E-07 49.9 3.2 23 15-37 31-53 (381)
381 1zak_A Adenylate kinase; ATP:A 96.1 0.0035 1.2E-07 45.8 3.1 22 14-35 6-27 (222)
382 1e6c_A Shikimate kinase; phosp 96.1 0.0036 1.2E-07 43.6 3.0 21 15-35 4-24 (173)
383 1vht_A Dephospho-COA kinase; s 96.1 0.0039 1.3E-07 45.4 3.3 23 13-35 4-26 (218)
384 1iy2_A ATP-dependent metallopr 96.1 0.0036 1.2E-07 47.4 3.2 22 16-37 76-97 (278)
385 1qf9_A UMP/CMP kinase, protein 96.1 0.0042 1.5E-07 44.0 3.4 22 14-35 7-28 (194)
386 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0038 1.3E-07 45.6 3.1 22 15-36 25-46 (235)
387 1nn5_A Similar to deoxythymidy 96.1 0.0039 1.3E-07 45.1 3.1 23 13-35 9-31 (215)
388 1v43_A Sugar-binding transport 96.0 0.0037 1.3E-07 49.6 3.2 23 15-37 39-61 (372)
389 1g29_1 MALK, maltose transport 96.0 0.0036 1.2E-07 49.7 3.1 23 15-37 31-53 (372)
390 4e22_A Cytidylate kinase; P-lo 96.0 0.004 1.4E-07 46.6 3.2 21 14-34 28-48 (252)
391 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0045 1.5E-07 46.5 3.5 22 14-35 5-26 (260)
392 3bos_A Putative DNA replicatio 96.0 0.0044 1.5E-07 45.4 3.4 23 14-36 53-75 (242)
393 2iyv_A Shikimate kinase, SK; t 96.0 0.0039 1.3E-07 44.0 3.0 21 15-35 4-24 (184)
394 2pez_A Bifunctional 3'-phospho 96.0 0.0049 1.7E-07 43.4 3.4 22 14-35 6-27 (179)
395 1p9r_A General secretion pathw 96.0 0.0038 1.3E-07 50.4 3.1 23 15-37 169-191 (418)
396 2w58_A DNAI, primosome compone 96.0 0.0049 1.7E-07 44.2 3.4 24 14-37 55-78 (202)
397 1lv7_A FTSH; alpha/beta domain 96.0 0.0048 1.6E-07 46.1 3.4 23 14-36 46-68 (257)
398 2vli_A Antibiotic resistance p 96.0 0.0031 1.1E-07 44.4 2.2 22 14-35 6-27 (183)
399 2oap_1 GSPE-2, type II secreti 96.0 0.004 1.4E-07 51.5 3.1 23 15-37 262-284 (511)
400 2grj_A Dephospho-COA kinase; T 95.9 0.0061 2.1E-07 43.7 3.7 25 12-36 11-35 (192)
401 3d31_A Sulfate/molybdate ABC t 95.9 0.0031 1.1E-07 49.6 2.2 23 15-37 28-50 (348)
402 1cr0_A DNA primase/helicase; R 95.9 0.0046 1.6E-07 47.3 3.1 23 15-37 37-59 (296)
403 2vp4_A Deoxynucleoside kinase; 95.9 0.0036 1.2E-07 46.1 2.4 25 12-36 19-43 (230)
404 4eaq_A DTMP kinase, thymidylat 95.9 0.0077 2.6E-07 44.4 4.1 25 12-36 25-49 (229)
405 3gd7_A Fusion complex of cysti 95.9 0.0047 1.6E-07 49.3 3.1 22 15-36 49-70 (390)
406 2og2_A Putative signal recogni 95.9 0.005 1.7E-07 48.6 3.2 24 12-35 156-179 (359)
407 3uc9_A Increased recombination 95.9 0.014 4.7E-07 42.9 5.2 27 11-37 27-53 (233)
408 3nwj_A ATSK2; P loop, shikimat 95.8 0.0049 1.7E-07 46.1 2.8 21 15-35 50-70 (250)
409 2yhs_A FTSY, cell division pro 95.8 0.0054 1.8E-07 50.4 3.2 23 13-35 293-315 (503)
410 1nij_A Hypothetical protein YJ 95.8 0.0039 1.3E-07 48.4 2.3 23 15-37 6-28 (318)
411 1n0w_A DNA repair protein RAD5 95.8 0.0059 2E-07 45.0 3.2 22 15-36 26-47 (243)
412 2cvh_A DNA repair and recombin 95.8 0.0059 2E-07 44.2 3.1 21 15-35 22-42 (220)
413 2obl_A ESCN; ATPase, hydrolase 95.8 0.0063 2.1E-07 47.8 3.4 23 15-37 73-95 (347)
414 1m7g_A Adenylylsulfate kinase; 95.8 0.0062 2.1E-07 44.1 3.1 23 13-35 25-47 (211)
415 3t15_A Ribulose bisphosphate c 95.8 0.0073 2.5E-07 46.2 3.7 26 12-37 35-60 (293)
416 3kta_A Chromosome segregation 95.7 0.0065 2.2E-07 42.8 3.1 21 15-35 28-48 (182)
417 1oxx_K GLCV, glucose, ABC tran 95.7 0.0031 1E-07 49.7 1.4 23 15-37 33-55 (353)
418 3r20_A Cytidylate kinase; stru 95.7 0.0056 1.9E-07 45.3 2.7 23 13-35 9-31 (233)
419 2npi_A Protein CLP1; CLP1-PCF1 95.7 0.0051 1.8E-07 50.2 2.7 22 15-36 140-161 (460)
420 1tue_A Replication protein E1; 95.7 0.0057 1.9E-07 44.3 2.6 22 15-36 60-81 (212)
421 1njg_A DNA polymerase III subu 95.7 0.007 2.4E-07 44.1 3.1 22 15-36 47-68 (250)
422 3h4m_A Proteasome-activating n 95.7 0.0074 2.5E-07 45.7 3.3 23 14-36 52-74 (285)
423 2chg_A Replication factor C sm 95.7 0.0072 2.5E-07 43.5 3.1 21 16-36 41-61 (226)
424 4dzz_A Plasmid partitioning pr 95.6 0.037 1.3E-06 39.5 6.9 86 61-154 76-162 (206)
425 3b9p_A CG5977-PA, isoform A; A 95.6 0.0075 2.6E-07 46.0 3.3 23 14-36 55-77 (297)
426 1ltq_A Polynucleotide kinase; 95.6 0.0068 2.3E-07 46.4 3.0 22 14-35 3-24 (301)
427 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.0083 2.9E-07 44.7 3.4 23 14-36 40-62 (262)
428 1svm_A Large T antigen; AAA+ f 95.6 0.0076 2.6E-07 47.9 3.1 22 14-35 170-191 (377)
429 3syl_A Protein CBBX; photosynt 95.5 0.0086 2.9E-07 45.9 3.4 24 12-35 66-89 (309)
430 3gmt_A Adenylate kinase; ssgci 95.5 0.0086 2.9E-07 44.2 3.1 24 12-35 7-30 (230)
431 1d2n_A N-ethylmaleimide-sensit 95.5 0.013 4.5E-07 44.1 4.1 26 11-36 62-87 (272)
432 3cf0_A Transitional endoplasmi 95.4 0.0096 3.3E-07 45.7 3.3 23 14-36 50-72 (301)
433 1l8q_A Chromosomal replication 95.4 0.0092 3.2E-07 46.2 3.1 22 15-36 39-60 (324)
434 2dpy_A FLII, flagellum-specifi 95.4 0.01 3.5E-07 48.1 3.4 23 15-37 159-181 (438)
435 1nlf_A Regulatory protein REPA 95.3 0.01 3.5E-07 45.0 3.1 21 15-35 32-52 (279)
436 3euj_A Chromosome partition pr 95.3 0.01 3.5E-07 48.7 3.2 21 15-35 31-51 (483)
437 2px0_A Flagellar biosynthesis 95.3 0.011 3.9E-07 45.3 3.3 86 60-157 182-273 (296)
438 3ake_A Cytidylate kinase; CMP 95.3 0.013 4.4E-07 42.0 3.4 21 15-35 4-24 (208)
439 1ofh_A ATP-dependent HSL prote 95.3 0.011 3.8E-07 45.1 3.2 23 14-36 51-73 (310)
440 1yqt_A RNAse L inhibitor; ATP- 95.3 0.012 4E-07 49.2 3.4 23 15-37 49-71 (538)
441 2qby_A CDC6 homolog 1, cell di 95.2 0.011 3.7E-07 46.5 3.1 23 14-36 46-68 (386)
442 1q3t_A Cytidylate kinase; nucl 95.2 0.011 3.7E-07 43.7 2.9 25 11-35 14-38 (236)
443 3b60_A Lipid A export ATP-bind 95.2 0.011 3.7E-07 49.8 3.2 23 15-37 371-393 (582)
444 1f2t_A RAD50 ABC-ATPase; DNA d 95.2 0.013 4.6E-07 40.0 3.1 19 16-34 26-44 (149)
445 2qmh_A HPR kinase/phosphorylas 95.2 0.011 3.8E-07 42.6 2.8 24 14-37 35-58 (205)
446 3zvl_A Bifunctional polynucleo 95.2 0.011 3.8E-07 47.6 3.1 24 13-36 258-281 (416)
447 4fcw_A Chaperone protein CLPB; 95.2 0.013 4.4E-07 44.9 3.4 24 14-37 48-71 (311)
448 1fnn_A CDC6P, cell division co 95.2 0.013 4.4E-07 46.3 3.4 23 15-37 46-68 (389)
449 2dr3_A UPF0273 protein PH0284; 95.2 0.013 4.3E-07 43.2 3.1 21 15-35 25-45 (247)
450 3u61_B DNA polymerase accessor 95.1 0.076 2.6E-06 40.9 7.6 22 16-37 51-72 (324)
451 1sxj_E Activator 1 40 kDa subu 95.1 0.01 3.5E-07 46.4 2.6 21 16-36 39-59 (354)
452 1sxj_C Activator 1 40 kDa subu 95.1 0.012 4.3E-07 45.8 3.1 22 16-37 49-70 (340)
453 3eie_A Vacuolar protein sortin 95.1 0.014 4.9E-07 45.2 3.3 24 13-36 51-74 (322)
454 1vma_A Cell division protein F 95.1 0.014 4.8E-07 45.0 3.2 87 61-159 187-285 (306)
455 2qgz_A Helicase loader, putati 95.1 0.015 5.3E-07 44.8 3.4 23 13-35 152-174 (308)
456 1xwi_A SKD1 protein; VPS4B, AA 95.0 0.015 5.2E-07 45.1 3.3 24 14-37 46-69 (322)
457 3b5x_A Lipid A export ATP-bind 95.0 0.017 5.7E-07 48.7 3.8 23 15-37 371-393 (582)
458 3j16_B RLI1P; ribosome recycli 95.0 0.014 4.7E-07 49.4 3.2 23 15-37 105-127 (608)
459 3ozx_A RNAse L inhibitor; ATP 95.0 0.017 5.9E-07 48.1 3.7 23 15-37 27-49 (538)
460 3crm_A TRNA delta(2)-isopenten 95.0 0.017 5.9E-07 44.8 3.4 23 14-36 6-28 (323)
461 3uk6_A RUVB-like 2; hexameric 95.0 0.016 5.4E-07 45.5 3.3 23 14-36 71-93 (368)
462 4b4t_K 26S protease regulatory 94.9 0.015 5.2E-07 46.9 3.1 23 14-36 207-229 (428)
463 3ld9_A DTMP kinase, thymidylat 94.9 0.02 6.7E-07 42.1 3.5 25 11-35 19-43 (223)
464 1sxj_D Activator 1 41 kDa subu 94.9 0.016 5.4E-07 45.2 3.1 21 16-36 61-81 (353)
465 3qf7_A RAD50; ABC-ATPase, ATPa 94.9 0.016 5.5E-07 45.8 3.1 21 13-34 24-44 (365)
466 4b4t_M 26S protease regulatory 94.9 0.016 5.6E-07 46.8 3.2 24 13-36 215-238 (434)
467 3d3q_A TRNA delta(2)-isopenten 94.9 0.017 5.7E-07 45.2 3.1 22 14-35 8-29 (340)
468 2ga8_A Hypothetical 39.9 kDa p 94.9 0.021 7.2E-07 44.9 3.7 22 13-34 24-45 (359)
469 2bjv_A PSP operon transcriptio 94.9 0.034 1.2E-06 41.6 4.8 25 14-38 30-54 (265)
470 2v1u_A Cell division control p 94.9 0.014 4.9E-07 45.9 2.8 23 14-36 45-67 (387)
471 3bk7_A ABC transporter ATP-bin 94.8 0.017 5.7E-07 48.9 3.3 23 15-37 119-141 (607)
472 2ocp_A DGK, deoxyguanosine kin 94.8 0.02 6.9E-07 42.3 3.4 23 14-36 3-25 (241)
473 2r62_A Cell division protease 94.8 0.0075 2.6E-07 45.3 1.1 21 16-36 47-67 (268)
474 1yqt_A RNAse L inhibitor; ATP- 94.8 0.018 6.2E-07 48.0 3.4 24 15-38 314-337 (538)
475 3ozx_A RNAse L inhibitor; ATP 94.8 0.016 5.3E-07 48.4 3.0 24 15-38 296-319 (538)
476 2yl4_A ATP-binding cassette SU 94.8 0.011 3.9E-07 49.8 2.2 23 15-37 372-394 (595)
477 1azs_C GS-alpha; complex (lyas 94.8 0.019 6.6E-07 46.0 3.4 24 11-34 38-61 (402)
478 3te6_A Regulatory protein SIR3 94.8 0.013 4.5E-07 45.4 2.4 25 13-37 45-69 (318)
479 3exa_A TRNA delta(2)-isopenten 94.8 0.019 6.6E-07 44.3 3.3 22 15-36 5-26 (322)
480 3pxg_A Negative regulator of g 94.8 0.015 5.1E-07 47.6 2.9 22 15-36 203-224 (468)
481 1pzn_A RAD51, DNA repair and r 94.8 0.017 5.8E-07 45.4 3.1 24 14-37 132-155 (349)
482 3a8t_A Adenylate isopentenyltr 94.8 0.019 6.5E-07 44.8 3.3 22 15-36 42-63 (339)
483 1p5z_B DCK, deoxycytidine kina 94.8 0.012 4.2E-07 44.1 2.1 25 12-36 23-47 (263)
484 4b4t_L 26S protease subunit RP 94.8 0.018 6.1E-07 46.6 3.2 24 13-36 215-238 (437)
485 3qf4_B Uncharacterized ABC tra 94.7 0.017 5.6E-07 48.9 3.0 23 15-37 383-405 (598)
486 3bk7_A ABC transporter ATP-bin 94.7 0.02 6.8E-07 48.4 3.4 24 15-38 384-407 (607)
487 3tqf_A HPR(Ser) kinase; transf 94.7 0.026 8.9E-07 39.7 3.4 35 150-184 127-161 (181)
488 3pfi_A Holliday junction ATP-d 94.7 0.02 6.7E-07 44.5 3.1 22 15-36 57-78 (338)
489 4a82_A Cystic fibrosis transme 94.7 0.014 4.9E-07 49.0 2.5 22 15-36 369-390 (578)
490 1c9k_A COBU, adenosylcobinamid 94.7 0.022 7.6E-07 40.3 3.1 21 16-36 2-22 (180)
491 2qp9_X Vacuolar protein sortin 94.7 0.02 6.8E-07 45.1 3.1 23 14-36 85-107 (355)
492 2qby_B CDC6 homolog 3, cell di 94.6 0.022 7.5E-07 44.9 3.4 22 15-36 47-68 (384)
493 3qf4_A ABC transporter, ATP-bi 94.6 0.014 4.8E-07 49.2 2.3 23 15-37 371-393 (587)
494 3d8b_A Fidgetin-like protein 1 94.6 0.023 7.7E-07 44.8 3.4 24 13-36 117-140 (357)
495 4b4t_J 26S protease regulatory 94.6 0.021 7.1E-07 45.7 3.1 23 14-36 183-205 (405)
496 1um8_A ATP-dependent CLP prote 94.6 0.021 7.3E-07 45.1 3.2 24 14-37 73-96 (376)
497 3j16_B RLI1P; ribosome recycli 94.5 0.021 7.2E-07 48.3 3.2 23 16-38 381-403 (608)
498 3foz_A TRNA delta(2)-isopenten 94.5 0.024 8.1E-07 43.7 3.2 23 14-36 11-33 (316)
499 2z4s_A Chromosomal replication 94.5 0.021 7.3E-07 46.3 3.1 22 15-36 132-153 (440)
500 3m6a_A ATP-dependent protease 94.5 0.023 7.8E-07 47.4 3.3 22 15-36 110-131 (543)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.2e-43 Score=264.14 Aligned_cols=207 Identities=30% Similarity=0.518 Sum_probs=143.1
Q ss_pred CCCCCCCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchh
Q 028315 1 MGSKVGNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTS 79 (210)
Q Consensus 1 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 79 (210)
|++......+.+++||+|+|++|||||||+++|..+.|.. +.||.+.++......+++..+.+++|||+|++.|..++.
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 5555555555678999999999999999999999999877 789999999998889999999999999999999999999
Q ss_pred hhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEeccc
Q 028315 80 SYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 159 (210)
.+++.++++++|||++++.+|+.+. .|...+.... ..+.|++||+||+|+.+.+.++.++++.++..++++|++|||+
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~-~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAk 158 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 158 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTT
T ss_pred HHhccccEEEEEeecchhHHHHHHH-HHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCC
Confidence 9999999999999999999999999 5666665554 4679999999999999889999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHccchhhhcccccccccccchhhhhhhcCCCCCCC
Q 028315 160 NTEDVKQCFKDLLYKILEVPSLLEQGSAVVKNQILKQKEVQESARGGNCCS 210 (210)
Q Consensus 160 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 210 (210)
+|.||+++|.+|++.+............... .+......+++.++++|||
T Consensus 159 tg~nV~e~F~~i~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~C~C 208 (216)
T 4dkx_A 159 AGYNVKQLFRRVAAALPGMESTQDRSREDMI-DIKLEKPQEQPVSEGGCSC 208 (216)
T ss_dssp TTBSHHHHHHHHHHHC-----------------------------------
T ss_pred CCcCHHHHHHHHHHHHHhhhccccccccccc-ccccCCCCCCCCCCCCCce
Confidence 9999999999999988755443332221111 1222223344455667776
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=6.6e-37 Score=226.42 Aligned_cols=172 Identities=48% Similarity=0.800 Sum_probs=154.2
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
.++.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 4788999999999999999999999998876 778888888888888899999999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
++|||++++.+++.+. .|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|
T Consensus 85 ilv~d~~~~~s~~~~~-~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 162 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVK-MWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162 (206)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999988 6777776554 4678999999999998877888888889998999999999999999999999
Q ss_pred HHHHHHHHccchhhh
Q 028315 169 KDLLYKILEVPSLLE 183 (210)
Q Consensus 169 ~~i~~~~~~~~~~~~ 183 (210)
++|.+.+.+......
T Consensus 163 ~~l~~~i~~~~~~~~ 177 (206)
T 2bcg_Y 163 LTMARQIKESMSQQN 177 (206)
T ss_dssp HHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999887655443
No 3
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-36 Score=223.26 Aligned_cols=176 Identities=43% Similarity=0.704 Sum_probs=145.1
Q ss_pred CCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccc
Q 028315 7 NNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGA 85 (210)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (210)
....++.+||+|+|++|||||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus 7 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 86 (223)
T 3cpj_B 7 GYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGA 86 (223)
T ss_dssp ---CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTC
T ss_pred CCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccC
Confidence 3445788999999999999999999999998876 678888888888888888889999999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHH
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 165 (210)
|++|+|||++++.+++.+. .|+..+.... ..+.|++||+||+|+...+.+..+++..++...+++++++||++|.|++
T Consensus 87 d~vilV~D~~~~~s~~~~~-~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 87 VGALIVYDISKSSSYENCN-HWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVD 164 (223)
T ss_dssp CEEEEEEC-CCHHHHHHHH-HHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHH
T ss_pred CEEEEEEeCCCHHHHHHHH-HHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999988 6777776554 4578999999999998777788888889999999999999999999999
Q ss_pred HHHHHHHHHHHccchhhhc
Q 028315 166 QCFKDLLYKILEVPSLLEQ 184 (210)
Q Consensus 166 ~l~~~i~~~~~~~~~~~~~ 184 (210)
++|++|.+.+.+.......
T Consensus 165 ~l~~~l~~~i~~~~~~~~~ 183 (223)
T 3cpj_B 165 KAFEELINTIYQKVSKHQM 183 (223)
T ss_dssp HHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHHHHhhhccc
Confidence 9999999999877665443
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=217.98 Aligned_cols=168 Identities=27% Similarity=0.482 Sum_probs=147.2
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
..+.+||+++|++|||||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 3568999999999999999999999988766 556665544 45567788889999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
++|||++++.++..+. .|...+.......+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|
T Consensus 90 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 90 LCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999988 677777666545689999999999998877888888999999899999999999999999999
Q ss_pred HHHHHHHHccc
Q 028315 169 KDLLYKILEVP 179 (210)
Q Consensus 169 ~~i~~~~~~~~ 179 (210)
++|.+.+.+..
T Consensus 169 ~~l~~~i~~~~ 179 (206)
T 2bov_A 169 FDLMREIRARK 179 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 99999988653
No 5
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.5e-35 Score=219.02 Aligned_cols=171 Identities=32% Similarity=0.582 Sum_probs=146.5
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
..+.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 4578999999999999999999999988766 778888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccC---CCCcEEEEEeCCCCCCCCccCHHHHHHHHH-HcCCeEEEecccCCcCH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTN---QDCVKILVGNKVDRDSERAVTREEGMILAQ-EHKCLFLECSAKNTEDV 164 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i 164 (210)
|+|+|++++.+++.+. .|...+...... .+.|+++|+||+|+. .+.+..++...+.. ..+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999887 676666544321 468999999999997 45567777777776 66789999999999999
Q ss_pred HHHHHHHHHHHHccchhh
Q 028315 165 KQCFKDLLYKILEVPSLL 182 (210)
Q Consensus 165 ~~l~~~i~~~~~~~~~~~ 182 (210)
+++|++|.+.+.+.+...
T Consensus 163 ~~l~~~l~~~~~~~~~~~ 180 (207)
T 1vg8_A 163 EQAFQTIARNALKQETEV 180 (207)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 999999999998766533
No 6
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.5e-34 Score=209.82 Aligned_cols=171 Identities=30% Similarity=0.476 Sum_probs=149.0
Q ss_pred CCCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhc
Q 028315 5 VGNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYR 83 (210)
Q Consensus 5 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (210)
..+....+.+||+++|++|+|||||+++|.+..+.. +.++.+..+ .....+++..+.+.+|||||++.+...+..+++
T Consensus 10 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 88 (183)
T 3kkq_A 10 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR 88 (183)
T ss_dssp ----CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHH
T ss_pred cCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHh
Confidence 344455689999999999999999999999988776 666666666 666788899999999999999999999999999
Q ss_pred cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEeccc-CCc
Q 028315 84 GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAK-NTE 162 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~-~~~ 162 (210)
.+|++++|||++++.+++.+. .|...+.......+.|+++|+||+|+.+.+.+..+++..++..++++++++||+ +|.
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (183)
T 3kkq_A 89 TGDGFLIVYSVTDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPL 167 (183)
T ss_dssp HCSEEEEEEETTCHHHHHTHH-HHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCB
T ss_pred cCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCC
Confidence 999999999999999999998 676666555446789999999999998888899999999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHc
Q 028315 163 DVKQCFKDLLYKILE 177 (210)
Q Consensus 163 ~i~~l~~~i~~~~~~ 177 (210)
|++++|++|.+.+.+
T Consensus 168 ~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 168 NVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998864
No 7
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=7.9e-35 Score=210.12 Aligned_cols=175 Identities=45% Similarity=0.771 Sum_probs=150.2
Q ss_pred CCCCCCCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchh
Q 028315 1 MGSKVGNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTS 79 (210)
Q Consensus 1 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 79 (210)
|+++......++.+||+++|.+|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+.
T Consensus 3 ~~s~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 82 (179)
T 1z0f_A 3 LGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTR 82 (179)
T ss_dssp --------CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHH
T ss_pred CCCCCCccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHH
Confidence 3455556667889999999999999999999999988766 678888888888888898899999999999999999999
Q ss_pred hhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEeccc
Q 028315 80 SYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 159 (210)
.+++.+|++++|+|++++.+++.+. .|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+
T Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (179)
T 1z0f_A 83 SYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAK 160 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHhccCCEEEEEEeCcCHHHHHHHH-HHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 9999999999999999999999888 6777666554 4678999999999998777788888999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHc
Q 028315 160 NTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 160 ~~~~i~~l~~~i~~~~~~ 177 (210)
+|.|++++|++|.+.+.+
T Consensus 161 ~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 161 TGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TCTTHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999988754
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=4.4e-34 Score=209.38 Aligned_cols=171 Identities=49% Similarity=0.803 Sum_probs=154.1
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
..++.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 34678999999999999999999999988776 77888888888888899999999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
+++|+|++++.+++.+. .|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++
T Consensus 92 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVK-QWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 169 (196)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 99999999999999998 6777776655 467899999999999888888888999999999999999999999999999
Q ss_pred HHHHHHHHHccchh
Q 028315 168 FKDLLYKILEVPSL 181 (210)
Q Consensus 168 ~~~i~~~~~~~~~~ 181 (210)
|++|.+.+.+....
T Consensus 170 ~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 170 FMTMAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcc
Confidence 99999998866543
No 9
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.6e-34 Score=209.03 Aligned_cols=176 Identities=52% Similarity=0.893 Sum_probs=154.7
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcccc
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAH 86 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (210)
....+.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 89 (195)
T 1x3s_A 10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ 89 (195)
T ss_dssp TTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 344678999999999999999999999998776 7788888888888889999999999999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHH
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 166 (210)
++++|+|++++.++..+. .|+..+.......+.|+++|+||+|+. .+.+..+++..++...+++++++||++|.|+++
T Consensus 90 ~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 90 GVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEEEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 999999999999999988 777777655434678999999999994 456777888889999999999999999999999
Q ss_pred HHHHHHHHHHccchhhhcc
Q 028315 167 CFKDLLYKILEVPSLLEQG 185 (210)
Q Consensus 167 l~~~i~~~~~~~~~~~~~~ 185 (210)
+|++|.+.+.+.+..++..
T Consensus 168 l~~~l~~~~~~~~~~~~~~ 186 (195)
T 1x3s_A 168 AFEELVEKIIQTPGLWESE 186 (195)
T ss_dssp HHHHHHHHHHTSGGGTCC-
T ss_pred HHHHHHHHHHhhhhhhccc
Confidence 9999999999876655543
No 10
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=3.5e-34 Score=209.47 Aligned_cols=172 Identities=44% Similarity=0.741 Sum_probs=150.0
Q ss_pred CCCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhc
Q 028315 5 VGNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYR 83 (210)
Q Consensus 5 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (210)
.......+.+||+++|++|+|||||+++|.+..+.. ..++.+.++....+.+++..+.+.+|||||++.+...+..+++
T Consensus 13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 92 (191)
T 2a5j_A 13 GLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR 92 (191)
T ss_dssp CCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc
Confidence 344555789999999999999999999999988876 6677787888778888988999999999999999999999999
Q ss_pred cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcC
Q 028315 84 GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTED 163 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 163 (210)
.+|++++|+|++++.+++.+. .|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|
T Consensus 93 ~~d~ii~v~d~~~~~s~~~~~-~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 170 (191)
T 2a5j_A 93 GAAGALLVYDITRRETFNHLT-SWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN 170 (191)
T ss_dssp TCSEEEEEEETTCHHHHHTHH-HHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred cCCEEEEEEECCCHHHHHHHH-HHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999999999999988 6777776554 46789999999999987778888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHcc
Q 028315 164 VKQCFKDLLYKILEV 178 (210)
Q Consensus 164 i~~l~~~i~~~~~~~ 178 (210)
++++|++|.+.+.+.
T Consensus 171 i~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 171 VEEAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
No 11
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=4e-34 Score=207.15 Aligned_cols=169 Identities=33% Similarity=0.481 Sum_probs=147.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
.+.+||+++|++|+|||||+++|.++.+.. +.++.+.++ .....+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 578999999999999999999999888766 677777776 666788899999999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+|||++++.+++.+. .|...+.......+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+
T Consensus 83 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIK-VIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 999999999999998 5766665554456899999999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHccchh
Q 028315 170 DLLYKILEVPSL 181 (210)
Q Consensus 170 ~i~~~~~~~~~~ 181 (210)
+|.+.+......
T Consensus 162 ~l~~~~~~~~~~ 173 (181)
T 3t5g_A 162 RIILEAEKMDGA 173 (181)
T ss_dssp HHHHHHHTC---
T ss_pred HHHHHHHHhcCC
Confidence 999999876543
No 12
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=6.2e-34 Score=207.74 Aligned_cols=172 Identities=45% Similarity=0.730 Sum_probs=152.8
Q ss_pred CCCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhc
Q 028315 5 VGNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYR 83 (210)
Q Consensus 5 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (210)
......++.+||+++|.+|+|||||+++|.+..+.. +.++.+.++....+...+..+.+.+|||||++.+...+..+++
T Consensus 14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 93 (189)
T 2gf9_A 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR 93 (189)
T ss_dssp CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT
T ss_pred CCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc
Confidence 344455789999999999999999999999998866 6788888888888888888999999999999999999999999
Q ss_pred cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcC
Q 028315 84 GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTED 163 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 163 (210)
.+|++++|||++++.+++.+. .|+..+.... ..+.|+++|+||+|+...+.+..++...++..++++++++||++|.|
T Consensus 94 ~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 94 GAMGFLLMYDIANQESFAAVQ-DWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171 (189)
T ss_dssp TCSEEEEEEETTCHHHHHTHH-HHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred CCCEEEEEEECCCHHHHHHHH-HHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 999999999999999999888 6777776554 46789999999999987777888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHcc
Q 028315 164 VKQCFKDLLYKILEV 178 (210)
Q Consensus 164 i~~l~~~i~~~~~~~ 178 (210)
++++|++|.+.+.+.
T Consensus 172 i~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 172 VKQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988753
No 13
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=3.2e-34 Score=207.45 Aligned_cols=171 Identities=37% Similarity=0.621 Sum_probs=148.3
Q ss_pred CCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcc
Q 028315 6 GNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRG 84 (210)
Q Consensus 6 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (210)
......+.+||+++|++|+|||||+++|.+..+.. ..++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 5 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 84 (181)
T 2efe_B 5 AAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 84 (181)
T ss_dssp -----CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTT
T ss_pred CCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhcc
Confidence 34455788999999999999999999999988777 66788888888888888889999999999999999999999999
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCH
Q 028315 85 AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDV 164 (210)
Q Consensus 85 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 164 (210)
+|++++|+|++++.+++.+. .|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|+
T Consensus 85 ~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 85 AAAAIIVFDVTNQASFERAK-KWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNV 162 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHH-HHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTH
T ss_pred CCEEEEEEECCCHHHHHHHH-HHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 99999999999999999888 6777666554 468899999999999877788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHcc
Q 028315 165 KQCFKDLLYKILEV 178 (210)
Q Consensus 165 ~~l~~~i~~~~~~~ 178 (210)
+++|++|.+.+.+.
T Consensus 163 ~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 163 KEIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999877543
No 14
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=207.13 Aligned_cols=171 Identities=45% Similarity=0.742 Sum_probs=151.3
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
..++.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 34688999999999999999999999888766 77888888888888889999999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
+++|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++
T Consensus 85 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVK-RWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM 161 (181)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 99999999999999988 6777776544 57899999999999888888888899999999999999999999999999
Q ss_pred HHHHHHHHHccchhh
Q 028315 168 FKDLLYKILEVPSLL 182 (210)
Q Consensus 168 ~~~i~~~~~~~~~~~ 182 (210)
|++|.+.+.+.+...
T Consensus 162 ~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 162 FNCITELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999988665533
No 15
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-34 Score=212.30 Aligned_cols=170 Identities=40% Similarity=0.759 Sum_probs=151.8
Q ss_pred CCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccc
Q 028315 7 NNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGA 85 (210)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (210)
+...++.+||+++|++|||||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 3445788999999999999999999999998876 778888888888888899999999999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHH
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 165 (210)
|++++|||++++.+++.+. .|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++
T Consensus 100 d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLP-EWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp SEEEEEEETTCHHHHHTHH-HHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred CEEEEEEECCCHHHHHHHH-HHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999988 7777776654 4678999999999998777888888888888889999999999999999
Q ss_pred HHHHHHHHHHHcc
Q 028315 166 QCFKDLLYKILEV 178 (210)
Q Consensus 166 ~l~~~i~~~~~~~ 178 (210)
++|++|.+.+.+.
T Consensus 178 ~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 178 KLFLDLACRLISE 190 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
No 16
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=5.1e-34 Score=207.66 Aligned_cols=169 Identities=30% Similarity=0.501 Sum_probs=143.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
..++||+++|++|||||||+++|.+..+.. +.++. .+.......+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 367999999999999999999999988766 44444 4555566778899999999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+|||++++.+++.+. .|...+.......+.|+++|+||+|+. .+.+..++...++..++++++++||++|.|++++|+
T Consensus 81 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 81 CVFAINNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999988 676666665546789999999999997 456777888899999999999999999999999999
Q ss_pred HHHHHHHccchhh
Q 028315 170 DLLYKILEVPSLL 182 (210)
Q Consensus 170 ~i~~~~~~~~~~~ 182 (210)
+|.+.+.......
T Consensus 159 ~l~~~~~~~~~~~ 171 (189)
T 4dsu_A 159 TLVREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhc
Confidence 9999998666544
No 17
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=207.03 Aligned_cols=167 Identities=28% Similarity=0.386 Sum_probs=135.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc--cccchhhhhccccEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER--FGTLTSSYYRGAHGI 88 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~~ 88 (210)
.+.+||+++|++|||||||+++|.+..+....++++.++....+.+++..+.+.+|||||++. +..+...+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 357999999999999999999999988877777788887777888899999999999999887 566677788999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
++|||++++.+++.+. .|...+.......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|
T Consensus 82 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 82 VIVYSIADRGSFESAS-ELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 9999999999999988 666666554334578999999999998878888888888888889999999999999999999
Q ss_pred HHHHHHHHcc
Q 028315 169 KDLLYKILEV 178 (210)
Q Consensus 169 ~~i~~~~~~~ 178 (210)
++|.+.+...
T Consensus 161 ~~l~~~~~~~ 170 (175)
T 2nzj_A 161 EGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 18
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=211.14 Aligned_cols=170 Identities=40% Similarity=0.727 Sum_probs=143.9
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcccc
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAH 86 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (210)
...++.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 334678999999999999999999999988766 6778777787778888888899999999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEecccCCcCHH
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC-LFLECSAKNTEDVK 165 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 165 (210)
++|+|||++++.+++.+. .|+..+.... ..+.|+++|+||+|+...+.+..+++..++...++ +++++||++|.|++
T Consensus 104 ~iilv~D~~~~~s~~~~~-~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 181 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVP-HWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVE 181 (201)
T ss_dssp EEEEEEETTBHHHHHTHH-HHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHH
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHH
Confidence 999999999999999988 6777776554 46789999999999987778888889999999999 99999999999999
Q ss_pred HHHHHHHHHHHccc
Q 028315 166 QCFKDLLYKILEVP 179 (210)
Q Consensus 166 ~l~~~i~~~~~~~~ 179 (210)
++|++|.+.+.+..
T Consensus 182 ~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 182 EAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987543
No 19
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-33 Score=204.39 Aligned_cols=170 Identities=42% Similarity=0.750 Sum_probs=142.9
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccc
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGA 85 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (210)
+..++.+||+++|++|+|||||+++|.+..+.. +.++.+.++......+++..+.+.+|||||++.+...+..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 345788999999999999999999999988753 678888888877778899899999999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHH
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 165 (210)
|++++|+|++++.+++.+. .|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++
T Consensus 85 d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQ-AWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVD 162 (180)
T ss_dssp SEEEEEEETTCHHHHHTHH-HHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred CEEEEEEECCCHHHHHHHH-HHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999888 6777776554 3678999999999998878888888888998899999999999999999
Q ss_pred HHHHHHHHHHHccc
Q 028315 166 QCFKDLLYKILEVP 179 (210)
Q Consensus 166 ~l~~~i~~~~~~~~ 179 (210)
++|+++.+.+.+..
T Consensus 163 ~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 163 LAFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887544
No 20
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=5.8e-34 Score=203.82 Aligned_cols=165 Identities=38% Similarity=0.646 Sum_probs=147.7
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
..+.+||+++|++|+|||||+++|.++.+.. +.++.+.++......+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 3578999999999999999999999988777 678888888888888899999999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
++|+|++++.+++.+. .|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 83 i~v~d~~~~~s~~~~~-~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (170)
T 1r2q_A 83 IVVYDITNEESFARAK-NWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160 (170)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999888 6766665554 4678999999999998777788888888998999999999999999999999
Q ss_pred HHHHHHHH
Q 028315 169 KDLLYKIL 176 (210)
Q Consensus 169 ~~i~~~~~ 176 (210)
++|.+.+.
T Consensus 161 ~~i~~~~~ 168 (170)
T 1r2q_A 161 MAIAKKLP 168 (170)
T ss_dssp HHHHHTSC
T ss_pred HHHHHHHh
Confidence 99988664
No 21
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=9.9e-34 Score=208.80 Aligned_cols=169 Identities=45% Similarity=0.746 Sum_probs=151.9
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
..++.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 45688999999999999999999999988766 77888888888888889999999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
+++|+|++++.+++.+. .|...+.... ..+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++
T Consensus 84 ii~v~d~~~~~s~~~~~-~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQ-DWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQT 161 (203)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence 99999999999999888 6777776554 467899999999999887788888899999999999999999999999999
Q ss_pred HHHHHHHHHccc
Q 028315 168 FKDLLYKILEVP 179 (210)
Q Consensus 168 ~~~i~~~~~~~~ 179 (210)
|++|.+.+.+..
T Consensus 162 ~~~l~~~i~~~~ 173 (203)
T 1zbd_A 162 FERLVDVICEKM 173 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 22
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=4.3e-34 Score=204.68 Aligned_cols=166 Identities=39% Similarity=0.683 Sum_probs=141.9
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
.++.+||+++|++|+|||||++++.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 4678999999999999999999999988766 778888888877888888899999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
++|+|++++.+++.+. .|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 83 i~v~d~~~~~s~~~~~-~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1z08_A 83 ILVYDITDEDSFQKVK-NWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160 (170)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 9999999999999888 6777665544 3578999999999998777888888999999999999999999999999999
Q ss_pred HHHHHHHHc
Q 028315 169 KDLLYKILE 177 (210)
Q Consensus 169 ~~i~~~~~~ 177 (210)
++|.+.+.+
T Consensus 161 ~~l~~~~~~ 169 (170)
T 1z08_A 161 LDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998864
No 23
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=7.6e-34 Score=206.45 Aligned_cols=170 Identities=48% Similarity=0.784 Sum_probs=151.7
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
..++.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 34788999999999999999999999998876 77888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
+++|+|++++.+++.+. .|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++
T Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (186)
T 2bme_A 86 ALLVYDITSRETYNALT-NWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEA 163 (186)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 99999999999999988 6776665554 467899999999999877778888888999999999999999999999999
Q ss_pred HHHHHHHHHccch
Q 028315 168 FKDLLYKILEVPS 180 (210)
Q Consensus 168 ~~~i~~~~~~~~~ 180 (210)
|+++.+.+.+...
T Consensus 164 ~~~l~~~~~~~~~ 176 (186)
T 2bme_A 164 FVQCARKILNKIE 176 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999886543
No 24
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.4e-34 Score=209.96 Aligned_cols=169 Identities=46% Similarity=0.787 Sum_probs=122.5
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
.++.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 4678999999999999999999999887765 667778788877788888899999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
++|||++++.+++.+. .|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|
T Consensus 85 i~v~d~~~~~s~~~~~-~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 162 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIR-NWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162 (183)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999988 6777776554 4578999999999998877888888999999999999999999999999999
Q ss_pred HHHHHHHHccch
Q 028315 169 KDLLYKILEVPS 180 (210)
Q Consensus 169 ~~i~~~~~~~~~ 180 (210)
++|.+.+.+...
T Consensus 163 ~~l~~~i~~~~~ 174 (183)
T 2fu5_C 163 FTLARDIKAKMD 174 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999876443
No 25
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=3.4e-34 Score=204.59 Aligned_cols=164 Identities=26% Similarity=0.363 Sum_probs=121.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVY 92 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (210)
.+||+++|++|||||||++++.+..+....++.+.++. ....+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE-EEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE-EEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 58999999999999999999987777666677776663 55678899999999999999999999999999999999999
Q ss_pred eCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 93 DVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|++++.+++.+. .|...+.......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|.
T Consensus 81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 81 SVTDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp ETTCHHHHHHHH-HHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 999999999998 5655555443346899999999999988888999999999999999999999999999999999999
Q ss_pred HHHHcc
Q 028315 173 YKILEV 178 (210)
Q Consensus 173 ~~~~~~ 178 (210)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988754
No 26
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1.8e-33 Score=201.33 Aligned_cols=165 Identities=36% Similarity=0.604 Sum_probs=149.1
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
..+.+||+++|++|+|||||+++|.+..+.. +.++.+.++......+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 3578999999999999999999999998766 788889888888888899999999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
++|+|++++.+++.+. .|+..+.... ....|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 83 i~v~d~~~~~s~~~~~-~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 160 (170)
T 1z0j_A 83 IIVYDITKEETFSTLK-NWVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELF 160 (170)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhC-CCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence 9999999999999887 7777776654 4678999999999998777888888889999999999999999999999999
Q ss_pred HHHHHHHH
Q 028315 169 KDLLYKIL 176 (210)
Q Consensus 169 ~~i~~~~~ 176 (210)
++|.+.+.
T Consensus 161 ~~i~~~i~ 168 (170)
T 1z0j_A 161 IEISRRIP 168 (170)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHh
Confidence 99988764
No 27
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=206.37 Aligned_cols=170 Identities=39% Similarity=0.691 Sum_probs=151.1
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcccc
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAH 86 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (210)
+..++.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 345678999999999999999999999998876 6778888888888888889999999999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHH
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 166 (210)
++|+|+|++++.++..+. .|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|+++
T Consensus 100 ~vi~v~D~~~~~s~~~~~-~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVE-RWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL 177 (193)
T ss_dssp EEEEEEETTCHHHHHTHH-HHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999888 6766665443 46789999999999987777888888899988999999999999999999
Q ss_pred HHHHHHHHHHccc
Q 028315 167 CFKDLLYKILEVP 179 (210)
Q Consensus 167 l~~~i~~~~~~~~ 179 (210)
+|++|.+.+.+..
T Consensus 178 l~~~l~~~i~~~~ 190 (193)
T 2oil_A 178 AFETVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887543
No 28
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.7e-33 Score=203.45 Aligned_cols=169 Identities=31% Similarity=0.540 Sum_probs=146.5
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
.....+||+++|.+|+|||||+++|.+..+.. +.++.+..+. ....+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 34678999999999999999999999988766 6667666655 566788888999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
+++|+|++++.++..+. .|...+.......+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++
T Consensus 84 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 162 (181)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 99999999999999988 55555533333568899999999999887788888888999999999999999999999999
Q ss_pred HHHHHHHHHccc
Q 028315 168 FKDLLYKILEVP 179 (210)
Q Consensus 168 ~~~i~~~~~~~~ 179 (210)
|++|.+.+.+..
T Consensus 163 ~~~l~~~~~~~~ 174 (181)
T 2fn4_A 163 FEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999987544
No 29
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.3e-34 Score=208.29 Aligned_cols=169 Identities=36% Similarity=0.604 Sum_probs=149.1
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcccc
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAH 86 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (210)
...++.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 344679999999999999999999999998765 8889998888888888888999999999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHH
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 166 (210)
++++|+|++++.+++.+. .|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus 98 ~iilV~d~~~~~s~~~~~-~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLK-KWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEE 175 (192)
T ss_dssp EEEEEEETTCTHHHHHHH-HHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHH
T ss_pred EEEEEEeCCCHHHHHHHH-HHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence 999999999999999987 7777776654 46789999999999987677888889999999999999999999999999
Q ss_pred HHHHHHHHHHcc
Q 028315 167 CFKDLLYKILEV 178 (210)
Q Consensus 167 l~~~i~~~~~~~ 178 (210)
+|++|.+.+.+.
T Consensus 176 l~~~l~~~i~~~ 187 (192)
T 2fg5_A 176 LFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHHhh
Confidence 999999877543
No 30
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.1e-33 Score=206.63 Aligned_cols=174 Identities=33% Similarity=0.617 Sum_probs=149.9
Q ss_pred CCCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEE-EEEEEECCe---------EEEEEEEeCCCCcc
Q 028315 5 VGNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFK-IKLLTVGGK---------RLKLTIWDTAGQER 73 (210)
Q Consensus 5 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~---------~~~~~l~Dt~G~~~ 73 (210)
+.++..++.+||+++|++|+|||||+++|.+..+.. +.++.+.++. ...+.+++. .+.+.+|||||++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 445566889999999999999999999999988766 6778887776 555566655 78999999999999
Q ss_pred cccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeE
Q 028315 74 FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLF 153 (210)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (210)
+...+..+++.+|++++|+|++++.++..+. .|+..+.......+.|+++|+||+|+.+.+.+..+++..++...++++
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPY 161 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCE
Confidence 9999999999999999999999999999988 777777666544689999999999998777788888889998899999
Q ss_pred EEecccCCcCHHHHHHHHHHHHHccc
Q 028315 154 LECSAKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 154 ~~~sa~~~~~i~~l~~~i~~~~~~~~ 179 (210)
+++||++|.|++++|++|.+.+.+..
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987543
No 31
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-33 Score=202.20 Aligned_cols=163 Identities=44% Similarity=0.719 Sum_probs=145.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
+.+||+++|++|+|||||++++.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 47999999999999999999999988766 77888888888888889999999999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC---CccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE---RAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
|+|++++.+++.+. .|+..+.... ..+.|+++|+||+|+... +.+..++...++...+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 82 VYDVTKPQSFIKAR-HWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159 (170)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred EEecCChHHHHHHH-HHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999988 6776666554 468899999999999765 667788888888889999999999999999999
Q ss_pred HHHHHHHHH
Q 028315 168 FKDLLYKIL 176 (210)
Q Consensus 168 ~~~i~~~~~ 176 (210)
|++|.+.+.
T Consensus 160 ~~~l~~~i~ 168 (170)
T 1ek0_A 160 FLGIGEKIP 168 (170)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHHHh
Confidence 999987654
No 32
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.8e-34 Score=207.55 Aligned_cols=169 Identities=43% Similarity=0.794 Sum_probs=144.1
Q ss_pred CCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccc
Q 028315 7 NNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGA 85 (210)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (210)
+.+.++.+||+++|.+|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 3445689999999999999999999999888766 678888888888888888899999999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHc-CCeEEEecccCCcCH
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEH-KCLFLECSAKNTEDV 164 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i 164 (210)
|++++|+|++++.+++.+. .|...+.... ..+.|+++|+||+|+...+.+..++...++... +.+++++||++|.|+
T Consensus 100 d~iilV~D~~~~~s~~~~~-~~~~~i~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLP-KWMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV 177 (192)
T ss_dssp SEEEEEEETTCHHHHHTHH-HHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred CEEEEEEECcCHHHHHHHH-HHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence 9999999999999999987 7877776654 467899999999999877788888888888874 789999999999999
Q ss_pred HHHHHHHHHHHHc
Q 028315 165 KQCFKDLLYKILE 177 (210)
Q Consensus 165 ~~l~~~i~~~~~~ 177 (210)
+++|++|.+.+.+
T Consensus 178 ~~l~~~l~~~i~~ 190 (192)
T 2il1_A 178 DEIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
No 33
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=3.5e-33 Score=204.50 Aligned_cols=168 Identities=29% Similarity=0.529 Sum_probs=148.2
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
..+.+||+++|.+|+|||||+++|.+..+.. +.++.+.++.. ...+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 4578999999999999999999999998866 66777766653 567888999999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC--CccCHHHHHHHHHHcCCe-EEEecccCCcCHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE--RAVTREEGMILAQEHKCL-FLECSAKNTEDVK 165 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~ 165 (210)
++|||++++.++..+...|...+.... .+.|+++|+||+|+... +.+..+++..++..+++. ++++||++|.|++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence 999999999999998658888887654 67899999999999753 668888999999999998 9999999999999
Q ss_pred HHHHHHHHHHHccch
Q 028315 166 QCFKDLLYKILEVPS 180 (210)
Q Consensus 166 ~l~~~i~~~~~~~~~ 180 (210)
++|++|.+.+.+.++
T Consensus 177 ~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 177 EVFEKSVDCIFSNKP 191 (194)
T ss_dssp HHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999987654
No 34
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.6e-33 Score=201.65 Aligned_cols=165 Identities=26% Similarity=0.349 Sum_probs=131.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc-chhhhhccccEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT-LTSSYYRGAHGIIL 90 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~i~ 90 (210)
.+||+++|++|+|||||+++|.+..+.. ..++.+.+.....+.+++..+.+.+|||||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999998776655 555556677777778899999999999999998876 77778899999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKD 170 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~ 170 (210)
|||++++.+++.+. .|...+.......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 82 VFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCChHHHHHHH-HHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence 99999999999998 56666655543458999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHcc
Q 028315 171 LLYKILEV 178 (210)
Q Consensus 171 i~~~~~~~ 178 (210)
+.+.+..+
T Consensus 161 l~~~i~~~ 168 (169)
T 3q85_A 161 AVRQIRLR 168 (169)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99988754
No 35
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.2e-33 Score=206.23 Aligned_cols=170 Identities=37% Similarity=0.635 Sum_probs=145.2
Q ss_pred CCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc-cchhhhhcc
Q 028315 7 NNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG-TLTSSYYRG 84 (210)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~ 84 (210)
.....+.+||+++|.+|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+. ..+..+++.
T Consensus 14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (189)
T 1z06_A 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN 93 (189)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence 3444578999999999999999999999988876 77888888888888889989999999999999988 888999999
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCC---
Q 028315 85 AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNT--- 161 (210)
Q Consensus 85 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~--- 161 (210)
+|++++|+|++++.+++.+. .|...+.......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|
T Consensus 94 ~d~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~ 172 (189)
T 1z06_A 94 VHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDN 172 (189)
T ss_dssp CCEEEEEEETTCHHHHHTHH-HHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGG
T ss_pred CCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcc
Confidence 99999999999999999988 67777766654578999999999999877788888899999999999999999999
Q ss_pred cCHHHHHHHHHHHHHc
Q 028315 162 EDVKQCFKDLLYKILE 177 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~~ 177 (210)
.|++++|.+|.+.+.+
T Consensus 173 ~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 173 DHVEAIFMTLAHKLKS 188 (189)
T ss_dssp SCHHHHHHHHC-----
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999887753
No 36
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2e-33 Score=201.09 Aligned_cols=165 Identities=51% Similarity=0.788 Sum_probs=140.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
++.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 357999999999999999999999988766 6777787777777778888899999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+|+|++++.+++.+. .|+..+.... ..+.|+++|+||+|+ ..+.+..++...++...+++++++||++|.|++++|+
T Consensus 81 ~v~d~~~~~s~~~~~-~~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 157 (170)
T 1g16_A 81 LVYDITDERTFTNIK-QWFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF 157 (170)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHS-CTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhc-CCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999888 6777766554 467899999999999 4456777888888888999999999999999999999
Q ss_pred HHHHHHHcc
Q 028315 170 DLLYKILEV 178 (210)
Q Consensus 170 ~i~~~~~~~ 178 (210)
+|.+.+.++
T Consensus 158 ~l~~~~~~~ 166 (170)
T 1g16_A 158 TLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999988754
No 37
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.1e-34 Score=209.15 Aligned_cols=169 Identities=28% Similarity=0.446 Sum_probs=141.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
.+.+||+++|.+|||||||+++|.+..+.. +.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 568999999999999999999999998877 556666655 555566677889999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+|||++++.+++.+. .|...+.......+.|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+
T Consensus 101 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 101 LVYSVTSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999998 6777666554456789999999999988888898999999999999999999999999999999
Q ss_pred HHHHHHHccchh
Q 028315 170 DLLYKILEVPSL 181 (210)
Q Consensus 170 ~i~~~~~~~~~~ 181 (210)
+|.+.+.+....
T Consensus 180 ~l~~~i~~~~~~ 191 (201)
T 3oes_A 180 KVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHhhhhh
Confidence 999999866543
No 38
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=207.36 Aligned_cols=171 Identities=26% Similarity=0.348 Sum_probs=142.0
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc-chhhhhcccc
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT-LTSSYYRGAH 86 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d 86 (210)
...+.+||+++|++|||||||+++|.+..... ..++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 34578999999999999999999997544332 344555556666677899999999999999988765 7778899999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHH
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 166 (210)
++++|||++++.+|+.+. .|+..+.......+.|+++|+||+|+...+.+..++++.++...+++++++||++|.|+++
T Consensus 99 ~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177 (195)
T ss_dssp EEEEEEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence 999999999999999998 5766666554345799999999999988788888889999998999999999999999999
Q ss_pred HHHHHHHHHHccch
Q 028315 167 CFKDLLYKILEVPS 180 (210)
Q Consensus 167 l~~~i~~~~~~~~~ 180 (210)
+|+++++.+...+.
T Consensus 178 lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 178 LFEGAVRQIRLRRG 191 (195)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999875443
No 39
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2.2e-33 Score=200.48 Aligned_cols=164 Identities=35% Similarity=0.565 Sum_probs=147.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
++.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 568999999999999999999999988766 6788888888888888888999999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+|+|++++.+++.+. .|...+.... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus 83 ~v~d~~~~~s~~~~~-~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 159 (168)
T 1z2a_A 83 LVFSTTDRESFEAIS-SWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159 (168)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 999999999999888 5777665544 5789999999999987777888888899999999999999999999999999
Q ss_pred HHHHHHHc
Q 028315 170 DLLYKILE 177 (210)
Q Consensus 170 ~i~~~~~~ 177 (210)
+|.+.+.+
T Consensus 160 ~l~~~~~~ 167 (168)
T 1z2a_A 160 YLAEKHLQ 167 (168)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99998864
No 40
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=208.00 Aligned_cols=169 Identities=46% Similarity=0.746 Sum_probs=142.0
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
.++.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 4678999999999999999999999888766 677778778778888888889999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
|+|||++++.+++.+. .|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|
T Consensus 102 i~v~d~~~~~s~~~~~-~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 179 (200)
T 2o52_A 102 LLVYDITSRETYNSLA-AWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179 (200)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999988 6776665544 4678999999999998777788888888999999999999999999999999
Q ss_pred HHHHHHHHccch
Q 028315 169 KDLLYKILEVPS 180 (210)
Q Consensus 169 ~~i~~~~~~~~~ 180 (210)
++|.+.+.+...
T Consensus 180 ~~l~~~i~~~~~ 191 (200)
T 2o52_A 180 LKCARTILNKID 191 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999886543
No 41
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.2e-34 Score=208.13 Aligned_cols=169 Identities=30% Similarity=0.468 Sum_probs=140.7
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
.....+||+++|.+|||||||+++|.+..+.. +.++.+.++. ....+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 82 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence 34567999999999999999999999988766 5566654443 445678888999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHH
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 166 (210)
+++|||++++.+++.+. .|...+..... ..+.|+++|+||+|+.+ +.+..++...++..++++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELG-PIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEEEEETTCHHHHHTTH-HHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Confidence 99999999999999888 45555544332 24789999999999975 55777788888888999999999999999999
Q ss_pred HHHHHHHHHHccch
Q 028315 167 CFKDLLYKILEVPS 180 (210)
Q Consensus 167 l~~~i~~~~~~~~~ 180 (210)
+|++|.+.+.....
T Consensus 161 l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 161 LFQELLTLETRRNM 174 (199)
T ss_dssp HHHHHHHHCSSSCE
T ss_pred HHHHHHHHHhhhhc
Confidence 99999998765543
No 42
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=2.4e-33 Score=202.32 Aligned_cols=166 Identities=36% Similarity=0.605 Sum_probs=147.1
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
...+.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 34577999999999999999999999888776 77888888888888889999999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
+++|+|++++.+++.+. .|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++
T Consensus 90 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 167 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTS-KWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 167 (179)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999888 6766665544 467899999999999877788888888888889999999999999999999
Q ss_pred HHHHHHHHH
Q 028315 168 FKDLLYKIL 176 (210)
Q Consensus 168 ~~~i~~~~~ 176 (210)
|++|.+.+.
T Consensus 168 ~~~l~~~~~ 176 (179)
T 2y8e_A 168 FRRVAAALP 176 (179)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHHh
Confidence 999988664
No 43
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.3e-33 Score=210.08 Aligned_cols=171 Identities=25% Similarity=0.468 Sum_probs=143.6
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
....+||+++|++|||||||+++|.+..+.. +.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 3568999999999999999999999998877 677777666 45566778889999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------CccCHHHHHHHHHHcCC-eEEE
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE------------RAVTREEGMILAQEHKC-LFLE 155 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~ 155 (210)
|+|||++++.++..+...|...+.... .+.|+++|+||+|+... +.+..+++..++..+++ ++++
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 999999999999985448888887664 58899999999999753 67888999999999999 8999
Q ss_pred ecccCCcC-HHHHHHHHHHHHHccchhhh
Q 028315 156 CSAKNTED-VKQCFKDLLYKILEVPSLLE 183 (210)
Q Consensus 156 ~sa~~~~~-i~~l~~~i~~~~~~~~~~~~ 183 (210)
|||++|.| ++++|+++.+.+.......+
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~~~~~~~~~ 209 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLCLNKPSPLP 209 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHC------
T ss_pred eccCCCcccHHHHHHHHHHHHhccCcCCC
Confidence 99999998 99999999999987665443
No 44
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=4.6e-33 Score=198.68 Aligned_cols=163 Identities=34% Similarity=0.584 Sum_probs=141.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
+.+||+++|++|+|||||++++.++.+.. +.++.+..+. ....+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988766 5666665543 455677888999999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHc-CCeEEEecccCCcCHHHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEH-KCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~l~~ 169 (210)
|+|++++.+++.+. .|...+.......+.|+++|+||+|+.+.+.+..++...++..+ +.+++++||++|.|++++|+
T Consensus 81 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 81 VYSITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 99999999999988 56666655543568999999999999887778888888888887 78999999999999999999
Q ss_pred HHHHHHH
Q 028315 170 DLLYKIL 176 (210)
Q Consensus 170 ~i~~~~~ 176 (210)
+|.+.+.
T Consensus 160 ~l~~~i~ 166 (167)
T 1c1y_A 160 DLVRQIN 166 (167)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998774
No 45
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=4.6e-33 Score=198.62 Aligned_cols=164 Identities=28% Similarity=0.509 Sum_probs=140.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
..+||+++|++|+|||||++++.+..+.. +.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 46999999999999999999999988766 555655544 3455778888999999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKD 170 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~ 170 (210)
|+|++++.+++.+. .|...+.......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 82 VFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999988 67776666654568999999999999877778888899999989999999999999999999999
Q ss_pred HHHHHHc
Q 028315 171 LLYKILE 177 (210)
Q Consensus 171 i~~~~~~ 177 (210)
+.+.+.+
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998864
No 46
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.7e-33 Score=203.43 Aligned_cols=165 Identities=26% Similarity=0.434 Sum_probs=139.8
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
..+.+||+++|.+|||||||+++|.+..+.. +.++.+..+ .....+++..+.+.+|||||++.+... ..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 3578999999999999999999999998766 677777665 345677888999999999999988775 6789999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecc-cCCcCHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYST--NQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSA-KNTEDVK 165 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa-~~~~~i~ 165 (210)
++|||++++.+|+.+. .|+..+..... ..+.|+++|+||+|+...+.+..+++..++..++++++++|| ++|.|++
T Consensus 96 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSS-SYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 9999999999999998 67777665431 257899999999999877888888999999999999999999 8999999
Q ss_pred HHHHHHHHHHHc
Q 028315 166 QCFKDLLYKILE 177 (210)
Q Consensus 166 ~l~~~i~~~~~~ 177 (210)
++|++|.+.+.+
T Consensus 175 ~lf~~l~~~i~~ 186 (187)
T 3c5c_A 175 HVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 47
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=4.3e-33 Score=202.34 Aligned_cols=171 Identities=27% Similarity=0.478 Sum_probs=145.1
Q ss_pred CCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccc
Q 028315 7 NNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGA 85 (210)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (210)
+....+.+||+++|++|+|||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (187)
T 2a9k_A 12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 90 (187)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence 3334578999999999999999999999988766 555555444 44567788889999999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHH
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 165 (210)
|++++|||++++.+++.+. .|...+.......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++
T Consensus 91 d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 91 EGFLCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 169 (187)
T ss_dssp SEEEEEEETTCHHHHHHHH-HHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHH
Confidence 9999999999999999988 676666666545689999999999998777788888899999999999999999999999
Q ss_pred HHHHHHHHHHHccc
Q 028315 166 QCFKDLLYKILEVP 179 (210)
Q Consensus 166 ~l~~~i~~~~~~~~ 179 (210)
++|++|.+.+.+++
T Consensus 170 ~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 170 KVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987543
No 48
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.3e-32 Score=198.25 Aligned_cols=168 Identities=36% Similarity=0.640 Sum_probs=144.9
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
...+.+||+++|++|+|||||++++.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 34678999999999999999999999988766 77888888888888889988999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCCccCHHHHHHHHH-HcCCeEEEecccCCcC
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYST---NQDCVKILVGNKVDRDSERAVTREEGMILAQ-EHKCLFLECSAKNTED 163 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~ 163 (210)
+++|+|++++.+++.+. .|...+..... ..+.|+++|+||+|+. .+.+..++...++. ..+++++++||++|.|
T Consensus 83 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATN 160 (177)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 99999999999999887 67776655442 2678999999999997 55677778888887 5678999999999999
Q ss_pred HHHHHHHHHHHHHcc
Q 028315 164 VKQCFKDLLYKILEV 178 (210)
Q Consensus 164 i~~l~~~i~~~~~~~ 178 (210)
++++|+++.+.+.+.
T Consensus 161 i~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 161 VAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998754
No 49
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.7e-33 Score=206.49 Aligned_cols=168 Identities=51% Similarity=0.787 Sum_probs=145.8
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
...+.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 34567999999999999999999999988765 77888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
+++|||++++.+++.+. .|+..+.... ..+.|+++|+||+|+ ..+.+..++...++..++++++++||++|.|++++
T Consensus 96 ii~v~d~~~~~s~~~~~-~~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 172 (213)
T 3cph_A 96 IILVYDVTDERTFTNIK-QWFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 172 (213)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHT-TTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHH
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhc-CCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999888 6777666554 357899999999999 45567778888888888999999999999999999
Q ss_pred HHHHHHHHHccc
Q 028315 168 FKDLLYKILEVP 179 (210)
Q Consensus 168 ~~~i~~~~~~~~ 179 (210)
|++|.+.+.+..
T Consensus 173 ~~~l~~~~~~~~ 184 (213)
T 3cph_A 173 FFTLAKLIQEKI 184 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 50
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-34 Score=211.38 Aligned_cols=170 Identities=44% Similarity=0.754 Sum_probs=151.9
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcccc
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAH 86 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (210)
...++.+||+++|.+|+|||||+++|.+..+.. +.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence 344678999999999999999999999988766 6677777888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHH
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 166 (210)
++++|||++++.+++.+. .|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|+++
T Consensus 98 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQ-DWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQ 175 (191)
T ss_dssp EEEEEEETTCHHHHHTHH-HHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred EEEEEEECcCHHHHHHHH-HHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 999999999999999988 6888776654 46899999999999988888888899999999999999999999999999
Q ss_pred HHHHHHHHHHccc
Q 028315 167 CFKDLLYKILEVP 179 (210)
Q Consensus 167 l~~~i~~~~~~~~ 179 (210)
+|++|.+.+.+..
T Consensus 176 l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 176 AFERLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887543
No 51
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=207.07 Aligned_cols=168 Identities=39% Similarity=0.634 Sum_probs=137.4
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcccc
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAH 86 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (210)
....+.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 334568999999999999999999999998765 7788888888888888999999999999999999999999999999
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC------CCCccCHHHHHHHHHHcCCeEEEecccC
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD------SERAVTREEGMILAQEHKCLFLECSAKN 160 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 160 (210)
++|+|||++++.+++.+. .|+..+.... ..+.|+++|+||+|+. ..+.+..+++..++...+++++++||++
T Consensus 103 ~iilv~d~~~~~s~~~~~-~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 180 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIR-EWVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKD 180 (199)
T ss_dssp EEEEEEETTCHHHHHTHH-HHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTT
T ss_pred EEEEEEECCChHHHHHHH-HHHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCC
Confidence 999999999999999988 6777776554 3578999999999985 3566778888889988999999999999
Q ss_pred CcCHHHHHHHHHHHHHc
Q 028315 161 TEDVKQCFKDLLYKILE 177 (210)
Q Consensus 161 ~~~i~~l~~~i~~~~~~ 177 (210)
|.|++++|.+|.+.+.+
T Consensus 181 g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 181 GSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CTTHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998764
No 52
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2e-33 Score=202.76 Aligned_cols=169 Identities=32% Similarity=0.516 Sum_probs=145.2
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECC-eEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGG-KRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
..+.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+.+ ..+.+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 3567999999999999999999999888765 567777777777777776 67899999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhcc-CCCCc-EEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHH
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYST-NQDCV-KILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 165 (210)
+++|+|++++.+++.+. .|+..+..... ....| +++|+||+|+.+.+.+..++...++...+++++++||++|.|++
T Consensus 83 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 161 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF 161 (178)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence 99999999999999888 67777655431 12445 89999999998777788888889999899999999999999999
Q ss_pred HHHHHHHHHHHccc
Q 028315 166 QCFKDLLYKILEVP 179 (210)
Q Consensus 166 ~l~~~i~~~~~~~~ 179 (210)
++|++|.+.+.+.+
T Consensus 162 ~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 162 LCFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887554
No 53
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=9.1e-33 Score=200.95 Aligned_cols=163 Identities=19% Similarity=0.360 Sum_probs=139.3
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
..+.+||+++|++|||||||+++|.++.+.. +.++ ...+ ...+.+++..+.+.+|||+|++.+. +++.+|++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 4578999999999999999999999998877 5555 3333 4677889999999999999998876 78889999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC--CCCccCHHHHHHHHHHcC-CeEEEecccCCcCHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD--SERAVTREEGMILAQEHK-CLFLECSAKNTEDVK 165 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~ 165 (210)
++|||++++.+|+.+. .|...+.......+.|+++|+||+|+. ..+.+..+++..++..++ ++++++||++|.|++
T Consensus 90 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~ 168 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVY-NYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE 168 (184)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence 9999999999999988 677777665433578999999999994 566788889999999887 899999999999999
Q ss_pred HHHHHHHHHHHccch
Q 028315 166 QCFKDLLYKILEVPS 180 (210)
Q Consensus 166 ~l~~~i~~~~~~~~~ 180 (210)
++|+++.+.+.+.++
T Consensus 169 ~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 169 RVFQDVAQKVVALRK 183 (184)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998876543
No 54
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=5.3e-33 Score=198.13 Aligned_cols=164 Identities=32% Similarity=0.551 Sum_probs=141.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
+.+||+++|++|+|||||++++.++.+.. +.++.+. .....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988766 5555553 345667788888999999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKD 170 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~ 170 (210)
|+|++++.+++.+. .|...+.......+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 81 VYSLVNQQSFQDIK-PMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 99999999999888 55555554443568999999999999877788888888899889999999999999999999999
Q ss_pred HHHHHHc
Q 028315 171 LLYKILE 177 (210)
Q Consensus 171 i~~~~~~ 177 (210)
|.+.+.+
T Consensus 160 l~~~~~~ 166 (167)
T 1kao_A 160 IVRQMNY 166 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9988753
No 55
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.1e-33 Score=210.74 Aligned_cols=174 Identities=33% Similarity=0.611 Sum_probs=147.5
Q ss_pred CCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCe----------EEEEEEEeCCCCccc
Q 028315 6 GNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGK----------RLKLTIWDTAGQERF 74 (210)
Q Consensus 6 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~l~Dt~G~~~~ 74 (210)
.....++.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.+++. .+.+.+|||||++.+
T Consensus 18 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 97 (217)
T 2f7s_A 18 GSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF 97 (217)
T ss_dssp ---CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH
T ss_pred cCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH
Confidence 33445789999999999999999999999888765 6677777777666666665 789999999999999
Q ss_pred ccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 028315 75 GTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFL 154 (210)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (210)
...+..+++.+|++|+|||++++.+++.+. .|+..+.......+.|+++|+||+|+...+.+..++...++...+++++
T Consensus 98 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 176 (217)
T 2f7s_A 98 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYF 176 (217)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred HhHHHHHhcCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEE
Confidence 999999999999999999999999999888 6766655433236789999999999987778888889999999999999
Q ss_pred EecccCCcCHHHHHHHHHHHHHccch
Q 028315 155 ECSAKNTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 155 ~~sa~~~~~i~~l~~~i~~~~~~~~~ 180 (210)
++||++|.|++++|++|.+.+.+...
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999876544
No 56
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-32 Score=201.37 Aligned_cols=169 Identities=27% Similarity=0.519 Sum_probs=144.8
Q ss_pred CCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcc
Q 028315 6 GNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRG 84 (210)
Q Consensus 6 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (210)
......+.+||+++|++|+|||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.
T Consensus 11 ~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 89 (194)
T 2atx_A 11 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM 89 (194)
T ss_dssp SSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred CCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCC
Confidence 33444688999999999999999999999988766 566666554 3455677788999999999999999999999999
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------CccCHHHHHHHHHHcCC-
Q 028315 85 AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE------------RAVTREEGMILAQEHKC- 151 (210)
Q Consensus 85 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~- 151 (210)
+|++++|||++++.+++.+...|...+.... .+.|+++|+||+|+.+. +.+..+++..++..++.
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 167 (194)
T 2atx_A 90 TDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC 167 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence 9999999999999999998767877777654 47899999999999753 46778888899988887
Q ss_pred eEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 152 LFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 152 ~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
+++++||++|.|++++|++|.+.++.
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 89999999999999999999998763
No 57
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=2.4e-33 Score=208.17 Aligned_cols=170 Identities=29% Similarity=0.540 Sum_probs=141.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
.+.+||+++|++|+|||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 467999999999999999999999988766 667766554 345567888899999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCc--------cCHHHHHHHHHHcCC-eEEEecccC
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERA--------VTREEGMILAQEHKC-LFLECSAKN 160 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~sa~~ 160 (210)
+|||++++.+++.+...|...+.... .+.|+++|+||+|+...+. +..+++..++..++. +++++||++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 99999999999998767888887654 4789999999999866543 367788888888886 899999999
Q ss_pred CcCHHHHHHHHHHHHHccchhhh
Q 028315 161 TEDVKQCFKDLLYKILEVPSLLE 183 (210)
Q Consensus 161 ~~~i~~l~~~i~~~~~~~~~~~~ 183 (210)
|.|++++|++|.+.+.+.....+
T Consensus 164 g~gi~~l~~~l~~~~~~~~~~~~ 186 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQPPRRKE 186 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC-----
T ss_pred CCCHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999999987655433
No 58
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.8e-33 Score=206.90 Aligned_cols=168 Identities=26% Similarity=0.356 Sum_probs=137.3
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCC--CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc-cccchhhhhccc
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNS--VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER-FGTLTSSYYRGA 85 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~ 85 (210)
...+.+||+++|.+|||||||+++|.+.. +....++++.++....+.+++..+.+.+|||+|.+. +..+...+++.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 44568999999999999999999998644 344445566677777778899999999999999876 445566678899
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHH
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 165 (210)
|++++|||++++.+|+.+. .|...+.......+.|+++|+||+|+...+.+..++++.++..+++++++|||++|.||+
T Consensus 113 ~~~ilVydvt~~~sf~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp SEEEEEEETTCHHHHHHHH-HHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999988 566655443223578999999999998777788888888888889999999999999999
Q ss_pred HHHHHHHHHHHc
Q 028315 166 QCFKDLLYKILE 177 (210)
Q Consensus 166 ~l~~~i~~~~~~ 177 (210)
++|++|.+.+..
T Consensus 192 elf~~l~~~i~~ 203 (211)
T 2g3y_A 192 ELFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 59
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.4e-32 Score=197.27 Aligned_cols=163 Identities=20% Similarity=0.311 Sum_probs=137.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.+.+||+++|++|||||||+++|.++.+..+.++.+..+ ...+.+++..+.+.+|||||++. ..+++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 467999999999999999999999999887777777554 56667888899999999999876 467889999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCC--CCCccCHHHHHHHHHHc-CCeEEEecccCCcCHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYST--NQDCVKILVGNKVDRD--SERAVTREEGMILAQEH-KCLFLECSAKNTEDVK 165 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~ 165 (210)
|||++++.+++.+. .|...+..... ..+.|+++|+||+|+. ..+.+..+++..++... +++++++||++|.|++
T Consensus 79 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 79 VFSLEDENSFQAVS-RLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEECcCHHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 99999999999988 66555544432 2578999999999994 45678888888888776 6889999999999999
Q ss_pred HHHHHHHHHHHccch
Q 028315 166 QCFKDLLYKILEVPS 180 (210)
Q Consensus 166 ~l~~~i~~~~~~~~~ 180 (210)
++|+++.+.+.+...
T Consensus 158 ~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRK 172 (178)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999876544
No 60
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-32 Score=201.97 Aligned_cols=167 Identities=31% Similarity=0.475 Sum_probs=143.7
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
..+.+||+++|++|+|||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+|||||++. ...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 3567999999999999999999999988776 556666544 45567788899999999999988 77888899999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCc-CHHHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTE-DVKQC 167 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~l 167 (210)
++|||++++.+++.+. .|...+.......+.|+++|+||+|+...+.+..+++..++..++++++++||++|. |++++
T Consensus 103 ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l 181 (196)
T 2atv_A 103 VLVYDITDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI 181 (196)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence 9999999999999988 677766665545689999999999998777888888999999899999999999999 99999
Q ss_pred HHHHHHHHHccc
Q 028315 168 FKDLLYKILEVP 179 (210)
Q Consensus 168 ~~~i~~~~~~~~ 179 (210)
|++|.+.+.+.+
T Consensus 182 ~~~l~~~i~~~~ 193 (196)
T 2atv_A 182 FYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999987543
No 61
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1.3e-32 Score=200.00 Aligned_cols=165 Identities=22% Similarity=0.500 Sum_probs=141.7
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
..+.+||+++|++|+|||||+++|.+..+.. +.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 4678999999999999999999999988866 6677766653 4556778889999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------CccCHHHHHHHHHHcC-CeEEE
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE------------RAVTREEGMILAQEHK-CLFLE 155 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~ 155 (210)
++|||++++.+++.+...|...+.... .+.|+++|+||+|+.+. +.+..+++..++..++ .++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 160 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence 999999999999998557888776654 57899999999999642 5678888889998887 68999
Q ss_pred eccc-CCcCHHHHHHHHHHHHHc
Q 028315 156 CSAK-NTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 156 ~sa~-~~~~i~~l~~~i~~~~~~ 177 (210)
+||+ ++.|++++|+++.+.+++
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred eeecCCCcCHHHHHHHHHHHHhc
Confidence 9999 689999999999998874
No 62
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=201.92 Aligned_cols=168 Identities=29% Similarity=0.498 Sum_probs=137.5
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
...+.+||+++|++|+|||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 34678999999999999999999999888766 556665444 4556778888999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CCccCHHHHHHHHHHcCC-eEE
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS------------ERAVTREEGMILAQEHKC-LFL 154 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~ 154 (210)
+++|||++++.++..+...|...+.... .+.|+++|+||+|+.. .+.+..+++..++..++. +++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI 172 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 9999999999999998767887777654 4899999999999965 356778888888888887 899
Q ss_pred EecccCCcCHHHHHHHHHHHHHccc
Q 028315 155 ECSAKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 155 ~~sa~~~~~i~~l~~~i~~~~~~~~ 179 (210)
++||++|.|++++|++|.+.+.+.+
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999999887543
No 63
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=3e-32 Score=197.80 Aligned_cols=166 Identities=29% Similarity=0.518 Sum_probs=143.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
...+||+++|++|+|||||+++|.+..+.. +.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 467999999999999999999999888766 556665444 455677888999999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------CccCHHHHHHHHHHcCC-eEEEe
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE------------RAVTREEGMILAQEHKC-LFLEC 156 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 156 (210)
+|||++++.+++.+...|...+.... .+.|+++|+||+|+.+. +.+..++...++...+. +++++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 159 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence 99999999999988766877776654 48899999999998653 46777888888888887 89999
Q ss_pred cccCCcCHHHHHHHHHHHHHccc
Q 028315 157 SAKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 157 sa~~~~~i~~l~~~i~~~~~~~~ 179 (210)
||++|.|++++|+++.+.+.+.+
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 160 SALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHSCCC
T ss_pred cCCCccCHHHHHHHHHHHHhccc
Confidence 99999999999999999987554
No 64
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=6.4e-33 Score=206.69 Aligned_cols=177 Identities=29% Similarity=0.465 Sum_probs=146.3
Q ss_pred CCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEEC-CeEEEEEEEeCCCCcccccchhhhhcc
Q 028315 7 NNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVG-GKRLKLTIWDTAGQERFGTLTSSYYRG 84 (210)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (210)
+......+||+++|.+|||||||+++|++..+.. +.++.+.+......... +..+.+.+|||||++.+...+..+++.
T Consensus 5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (218)
T 4djt_A 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG 84 (218)
T ss_dssp -----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc
Confidence 3455678999999999999999999999888766 56777776666665554 344899999999999999999999999
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCH
Q 028315 85 AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDV 164 (210)
Q Consensus 85 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 164 (210)
+|++++|+|++++.+++.+. .|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|+
T Consensus 85 ~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 85 ASGAILFFDVTSRITCQNLA-RWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNF 162 (218)
T ss_dssp CSEEEEEEETTCHHHHHTHH-HHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTT
T ss_pred CCEEEEEEeCCCHHHHHHHH-HHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCH
Confidence 99999999999999999998 7777776655 456899999999999887788888888888889999999999999999
Q ss_pred HHHHHHHHHHHHccchhhhcc
Q 028315 165 KQCFKDLLYKILEVPSLLEQG 185 (210)
Q Consensus 165 ~~l~~~i~~~~~~~~~~~~~~ 185 (210)
+++|++|.+.+.+........
T Consensus 163 ~~l~~~l~~~~~~~~~~~~~~ 183 (218)
T 4djt_A 163 GLPFLHLARIFTGRPDLIFVS 183 (218)
T ss_dssp THHHHHHHHHHHCCTTCCBCS
T ss_pred HHHHHHHHHHHhccccccccc
Confidence 999999999998877655443
No 65
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=2.7e-32 Score=202.93 Aligned_cols=167 Identities=32% Similarity=0.560 Sum_probs=124.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
.+.+||+++|.+|+|||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 467999999999999999999999888766 555554443 455678888999999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC------------ccCHHHHHHHHHHcCC-eEEEe
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER------------AVTREEGMILAQEHKC-LFLEC 156 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 156 (210)
+|||++++.+++.+...|...+.... .+.|+++|+||+|+...+ .+..+++..++...++ +++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 99999999999998767888776654 578999999999997642 5677788889988887 89999
Q ss_pred cccCCcCHHHHHHHHHHHHHccch
Q 028315 157 SAKNTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 157 sa~~~~~i~~l~~~i~~~~~~~~~ 180 (210)
||++|.|++++|++|.+.+.+.+.
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC--
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999886543
No 66
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.1e-31 Score=195.77 Aligned_cols=167 Identities=29% Similarity=0.504 Sum_probs=132.6
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
+....+||+++|.+|||||||+++|.+..+.. +.++.+.. ....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 34578999999999999999999999988766 44555443 34556778888999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
+++|+|++++.+++.+. .|...+.......+.|+++|+||+|+.. +.+..++...++...+++++++||++|.|++++
T Consensus 96 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 96 FLCVFAINNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA 173 (190)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999887 7777776665456799999999999976 567778888899989999999999999999999
Q ss_pred HHHHHHHHHcc
Q 028315 168 FKDLLYKILEV 178 (210)
Q Consensus 168 ~~~i~~~~~~~ 178 (210)
|++|.+.+.+.
T Consensus 174 ~~~l~~~~~~~ 184 (190)
T 3con_A 174 FYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 67
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.5e-32 Score=198.62 Aligned_cols=168 Identities=33% Similarity=0.579 Sum_probs=129.9
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEEC-CeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVG-GKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
..+.+||+++|++|+|||||+++|.+..+.. +.++.+.++....+.++ +..+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4578999999999999999999999988766 67777777777776666 556899999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCC-CCccCHHHHHHHHH-HcCCeEEEecccCCc
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYST---NQDCVKILVGNKVDRDS-ERAVTREEGMILAQ-EHKCLFLECSAKNTE 162 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~ 162 (210)
+++|+|++++.+++.+. .|...+..... ..+.|+++|+||+|+.. .+.+..++...++. ..+.+++++||++|.
T Consensus 85 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEECCChHHHHHHH-HHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 99999999999999988 67666655432 26789999999999953 34567778888877 567889999999999
Q ss_pred CHHHHHHHHHHHHHcc
Q 028315 163 DVKQCFKDLLYKILEV 178 (210)
Q Consensus 163 ~i~~l~~~i~~~~~~~ 178 (210)
|++++|++|.+.+.+.
T Consensus 164 gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQ 179 (182)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988754
No 68
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=8.1e-32 Score=198.25 Aligned_cols=162 Identities=36% Similarity=0.624 Sum_probs=141.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeE-----------------------------
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKR----------------------------- 60 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------------------------- 60 (210)
.+.+||+++|++|+|||||+++|++..+.. +.++.+.++....+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 467999999999999999999999998776 77888877777776666554
Q ss_pred --------EEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 61 --------LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 61 --------~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+. .|+..+.... +.|+++|+||+| .
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~---~~piilv~NK~D-~ 159 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK-TWVNQLKISS---NYIIILVANKID-K 159 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHS---CCEEEEEEECTT-C
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHH-HHHHHHHhhC---CCcEEEEEECCC-c
Confidence 89999999999999999999999999999999999999999888 6777766544 389999999999 5
Q ss_pred CCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 133 SERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
..+.+..+++..++...+++++++||++|.|++++|++|.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 160 NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 556778888999999999999999999999999999999998864
No 69
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=3e-32 Score=201.49 Aligned_cols=165 Identities=22% Similarity=0.497 Sum_probs=141.5
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
..+.+||+++|++|||||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 3578999999999999999999999998876 567776665 34556778889999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CCccCHHHHHHHHHHcC-CeEEE
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS------------ERAVTREEGMILAQEHK-CLFLE 155 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~ 155 (210)
++|||++++.+|+.+...|...+.... .+.|+++|+||+|+.+ .+.+..+++..++..++ .++++
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 181 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 181 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998547888776654 5789999999999964 25677888889998887 68999
Q ss_pred eccc-CCcCHHHHHHHHHHHHHc
Q 028315 156 CSAK-NTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 156 ~sa~-~~~~i~~l~~~i~~~~~~ 177 (210)
|||+ ++.|++++|++|.+.++.
T Consensus 182 ~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 182 CSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHHHHhh
Confidence 9999 689999999999998874
No 70
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=2e-31 Score=189.67 Aligned_cols=162 Identities=30% Similarity=0.519 Sum_probs=139.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
.+||+++|++|+|||||++++.+..+.. +.++.+.. ....+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 5899999999999999999999988766 44555443 345567788889999999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i 171 (210)
+|++++.+++.+. .|...+.......+.|+++|+||+|+.+ +....++...+....+++++++||++|.|++++|++|
T Consensus 82 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 82 FAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999887 6777776665455899999999999876 4567778888888899999999999999999999999
Q ss_pred HHHHHc
Q 028315 172 LYKILE 177 (210)
Q Consensus 172 ~~~~~~ 177 (210)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998764
No 71
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.2e-31 Score=197.61 Aligned_cols=164 Identities=29% Similarity=0.533 Sum_probs=142.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
...+||+++|.+|+|||||+++|.+..+.. +.++.+.++. ..+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 568999999999999999999999988766 5666666554 34577888899999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------CccCHHHHHHHHHHcCC-eEEEe
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE------------RAVTREEGMILAQEHKC-LFLEC 156 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 156 (210)
+|||++++.+++.+...|...+.... .+.|+++|+||+|+... +.+..+++..++...+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 99999999999998557888877654 57899999999999765 45777888888888888 89999
Q ss_pred cccCCcCHHHHHHHHHHHHHc
Q 028315 157 SAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 157 sa~~~~~i~~l~~~i~~~~~~ 177 (210)
||++|.|++++|++|.+.+.+
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 72
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.1e-32 Score=194.00 Aligned_cols=164 Identities=29% Similarity=0.480 Sum_probs=137.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
..+||+++|++|+|||||++++.+..+.. +.++.+.++. .....++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 46999999999999999999999988765 5566554443 445678888999999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYS-TNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
|+|++++.+++.+. .|...+.... ...+.|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+
T Consensus 81 v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (172)
T 2erx_A 81 VYSITSRQSLEELK-PIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 159 (172)
T ss_dssp EEETTCHHHHHTTH-HHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEECcCHHHHHHHH-HHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence 99999999998888 4555444432 235789999999999987777888888888888899999999999999999999
Q ss_pred HHHHHHHc
Q 028315 170 DLLYKILE 177 (210)
Q Consensus 170 ~i~~~~~~ 177 (210)
+|.+.+..
T Consensus 160 ~l~~~~~~ 167 (172)
T 2erx_A 160 ELLNLEKR 167 (172)
T ss_dssp HHHHTCCS
T ss_pred HHHHHHhh
Confidence 99886643
No 73
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=9.6e-33 Score=206.25 Aligned_cols=175 Identities=27% Similarity=0.507 Sum_probs=150.8
Q ss_pred CCCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhc
Q 028315 5 VGNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYR 83 (210)
Q Consensus 5 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (210)
.......+.+||+++|.+|||||||+++|+.+.+.. +.++.+.++......+++..+.+.+|||||++.+...+..+++
T Consensus 7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 86 (221)
T 3gj0_A 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 86 (221)
T ss_dssp CSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred ccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHh
Confidence 444556788999999999999999999977776655 7888899999888899999999999999999999999999999
Q ss_pred cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcC
Q 028315 84 GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTED 163 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 163 (210)
.+|++++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+... .. +...++...+++++++||++|.|
T Consensus 87 ~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~-~~-~~~~~~~~~~~~~~~~Sa~~~~g 161 (221)
T 3gj0_A 87 QAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVC--ENIPIVLCGNKVDIKDRKV-KA-KSIVFHRKKNLQYYDISAKSNYN 161 (221)
T ss_dssp TCCEEEEEEETTCHHHHHTHH-HHHHHHHHHS--TTCCEEEEEECTTSSSCSS-CG-GGCCHHHHHTCEEEECBGGGTBT
T ss_pred cCCEEEEEEECCCHHHHHHHH-HHHHHHHHhC--CCCCEEEEEECCccccccc-cH-HHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999999999999998 6777776654 5789999999999975432 22 45567777889999999999999
Q ss_pred HHHHHHHHHHHHHccchhhhc
Q 028315 164 VKQCFKDLLYKILEVPSLLEQ 184 (210)
Q Consensus 164 i~~l~~~i~~~~~~~~~~~~~ 184 (210)
++++|++|.+.+...+.....
T Consensus 162 i~~l~~~l~~~l~~~~~~~~~ 182 (221)
T 3gj0_A 162 FEKPFLWLARKLIGDPNLEFV 182 (221)
T ss_dssp TTHHHHHHHHHHHTCTTCCEE
T ss_pred HHHHHHHHHHHHHhCcccccc
Confidence 999999999999987765433
No 74
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-31 Score=197.20 Aligned_cols=165 Identities=28% Similarity=0.525 Sum_probs=139.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
...+||+++|.+|+|||||+++|.+..+.. +.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 467999999999999999999999988876 55666655543 3577888899999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------CccCHHHHHHHHHHcCC-eEEEe
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE------------RAVTREEGMILAQEHKC-LFLEC 156 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 156 (210)
+|||++++.+++.+...|...+.... .+.|+++|+||+|+... +.+..+++..++...+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 99999999999998557888776644 57899999999999654 45677788888888888 89999
Q ss_pred cccCCcCHHHHHHHHHHHHHcc
Q 028315 157 SAKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 157 sa~~~~~i~~l~~~i~~~~~~~ 178 (210)
||++|.|++++|++|.+.+.+.
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 75
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=1.4e-31 Score=195.96 Aligned_cols=167 Identities=25% Similarity=0.335 Sum_probs=135.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCC--CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc-cccchhhhhccccE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNS--VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER-FGTLTSSYYRGAHG 87 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~ 87 (210)
.+.+||+++|++|||||||+++|.+.. +....++++.++....+.+++..+.+.+|||+|.+. +..+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 457999999999999999999998643 344445566676667778899999999999999776 55667778899999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
+++|||++++.+|+.+. .|...+.......+.|+++|+||+|+...+.+..+++..++..+++++++|||++|.||+++
T Consensus 84 ~i~v~dv~~~~s~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 84 YLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 99999999999999988 56665554432457899999999999877778888888888888999999999999999999
Q ss_pred HHHHHHHHHcc
Q 028315 168 FKDLLYKILEV 178 (210)
Q Consensus 168 ~~~i~~~~~~~ 178 (210)
|+++.+.+...
T Consensus 163 f~~l~~~~~~~ 173 (192)
T 2cjw_A 163 FEGIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988643
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=1.4e-32 Score=201.27 Aligned_cols=169 Identities=22% Similarity=0.234 Sum_probs=134.6
Q ss_pred CCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCC-----------CCceeeEEEEEEE-EECCeEEEEEEEeCCCCcc
Q 028315 6 GNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHDP-----------SPTIGVDFKIKLL-TVGGKRLKLTIWDTAGQER 73 (210)
Q Consensus 6 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~ 73 (210)
.....++.+||+++|++|||||||++.+.+.....+ .++.+.++....+ .+++..+.+.+|||||++.
T Consensus 7 ~~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 7 NFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp ETTTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred chhccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence 344567899999999999999999976655443332 2344444444434 5567789999999999999
Q ss_pred cccchhhhhccccEEEEEEeCC------CHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH
Q 028315 74 FGTLTSSYYRGAHGIILVYDVT------RRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ 147 (210)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 147 (210)
+...+..+++.+|++++|||++ +..++..+. .|+..+.. ...+.|+++|+||+|+.+. +..+++..++.
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~-~~l~~~~~--~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~ 161 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMR-ENLAEYGL--TLDDVPIVIQVNKRDLPDA--LPVEMVRAVVD 161 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHH-HHHHHTTC--CTTSSCEEEEEECTTSTTC--CCHHHHHHHHC
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHH-HHHHhhcc--ccCCCCEEEEEEchhcccc--cCHHHHHHHHH
Confidence 9999999999999999999999 455666665 45555421 2368899999999999653 77888889999
Q ss_pred HcCC-eEEEecccCCcCHHHHHHHHHHHHHccc
Q 028315 148 EHKC-LFLECSAKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 148 ~~~~-~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 179 (210)
..++ +++++||++|.|++++|++|.+.+.+..
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 162 PEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp TTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred hcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 8999 9999999999999999999999988654
No 77
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.3e-32 Score=203.25 Aligned_cols=169 Identities=23% Similarity=0.340 Sum_probs=111.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhC--CCCC-CCCceeeEEEEEEEEECCe--EEEEEEEeCCCCcccccchhhhhccc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISN--SVHD-PSPTIGVDFKIKLLTVGGK--RLKLTIWDTAGQERFGTLTSSYYRGA 85 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (210)
.+.+||+++|++|+|||||+++|.+. .+.. +.++.+.++....+.+++. .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46899999999999999999999988 6654 6677777777777777776 89999999999999999999999999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCC-CCccCHHHHHHHHHHcCCeEEEecccC-C
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYST--NQDCVKILVGNKVDRDS-ERAVTREEGMILAQEHKCLFLECSAKN-T 161 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~-~ 161 (210)
|++++|||++++.+++.+. .|+..+..... ..+.|+++|+||+|+.. .+.+..+++..++..++++++++||++ |
T Consensus 98 d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPG 176 (208)
T ss_dssp CEEEEEEETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC----
T ss_pred cEEEEEEECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCC
Confidence 9999999999999999998 78887776652 15889999999999987 677888899999999999999999999 9
Q ss_pred cCHHHHHHHHHHHHHccch
Q 028315 162 EDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~~~~~ 180 (210)
.|++++|++|.+.+.+...
T Consensus 177 ~gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 177 KDADAPFLSIATTFYRNYE 195 (208)
T ss_dssp ---CHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 9999999999998876544
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=1.1e-31 Score=198.28 Aligned_cols=162 Identities=28% Similarity=0.511 Sum_probs=137.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
.+.+||+++|.+|||||||+++|.+..+.. +.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 567999999999999999999999888876 555554 444556677888899999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC------------ccCHHHHHHHHHHcCC-eEEEe
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER------------AVTREEGMILAQEHKC-LFLEC 156 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 156 (210)
+|||++++.+++.+...|...+.... .+.|+++|+||+|+...+ .+..+++..++...+. +++++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 99999999999998767888877654 678999999999987543 2777788888888886 59999
Q ss_pred cccCCcCHHHHHHHHHHHH
Q 028315 157 SAKNTEDVKQCFKDLLYKI 175 (210)
Q Consensus 157 sa~~~~~i~~l~~~i~~~~ 175 (210)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998754
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=1.4e-32 Score=198.93 Aligned_cols=164 Identities=32% Similarity=0.569 Sum_probs=127.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
.+.+||+++|++|+|||||++++.+..+.. +.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 457999999999999999999999888765 5555554332 22345566788899999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCc----------cCHHHHHHHHHHcCC-eEEEecc
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERA----------VTREEGMILAQEHKC-LFLECSA 158 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa 158 (210)
+|+|++++.+++.+...|...+.... .+.|+++|+||+|+.+.+. +..+++..++..++. +++++||
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 99999999999998767888877654 4789999999999866544 467788888888886 8999999
Q ss_pred cCCcCHHHHHHHHHHHHHc
Q 028315 159 KNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 159 ~~~~~i~~l~~~i~~~~~~ 177 (210)
++|.|++++|++|.+.+.+
T Consensus 163 ~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988753
No 80
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.5e-34 Score=209.73 Aligned_cols=167 Identities=50% Similarity=0.830 Sum_probs=138.3
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
.++.+||+++|.+|||||||+++|.+..+.. +.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 4678999999999999999999999888776 667777788888888899999999999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHH
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
++|||++++.+++.+. .|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|
T Consensus 110 i~v~d~~~~~s~~~~~-~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~ 187 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVK-QWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187 (199)
T ss_dssp EECC-CCCSHHHHHHH-HHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHH
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999999998 6777775544 3578999999999998777777777888899999999999999999999999
Q ss_pred HHHHHHHHcc
Q 028315 169 KDLLYKILEV 178 (210)
Q Consensus 169 ~~i~~~~~~~ 178 (210)
++|.+.+.++
T Consensus 188 ~~l~~~l~~~ 197 (199)
T 3l0i_B 188 MTMAAEIKKR 197 (199)
T ss_dssp HHHTTTTTTT
T ss_pred HHHHHHHHHh
Confidence 9998876543
No 81
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.98 E-value=1.4e-31 Score=191.77 Aligned_cols=161 Identities=23% Similarity=0.354 Sum_probs=127.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.+.+||+++|++|+|||||++++.++.+..+.++.+.... .+.+. ...+.+|||||++.+...+..+++.+|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE--TVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceE--EEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 3569999999999999999999999988777777765443 33444 5789999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHH-H----HHHcCCeEEEecccCCcCHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMI-L----AQEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~sa~~~~~i~ 165 (210)
|+|++++.++.....++...+.. ....+.|+++|+||+|+.+... .++... + ....+++++++||++|.|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhc-hhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 99999999998888444444432 2136789999999999976432 222222 1 12345689999999999999
Q ss_pred HHHHHHHHHHHcc
Q 028315 166 QCFKDLLYKILEV 178 (210)
Q Consensus 166 ~l~~~i~~~~~~~ 178 (210)
++|++|.+.+.+.
T Consensus 158 ~l~~~l~~~i~~~ 170 (171)
T 1upt_A 158 EAMEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988754
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=1.7e-31 Score=196.00 Aligned_cols=168 Identities=17% Similarity=0.264 Sum_probs=126.0
Q ss_pred CCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhc
Q 028315 6 GNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYR 83 (210)
Q Consensus 6 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (210)
..++..+..||+++|.+|||||||+++|.+..+.. +.++.+..... ++...+.+.+|||||++.+...+..+++
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE----EEETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE----EEeCCEEEEEEECCCCHhHHHHHHHHHh
Confidence 34455789999999999999999999999988766 36777744442 3345678999999999999999999999
Q ss_pred cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhcc------CCCCcEEEEEeCCCCCCCCccCHHHHH-HH-----HHHcCC
Q 028315 84 GAHGIILVYDVTRRETFTNLSSVWAKEVELYST------NQDCVKILVGNKVDRDSERAVTREEGM-IL-----AQEHKC 151 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~-----~~~~~~ 151 (210)
.+|++|+|||++++.+|..+..++...+..... ..+.|+++|+||+|+..... .++.. .+ ....++
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~ 163 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPF 163 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCE
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCee
Confidence 999999999999999999998555444432110 13789999999999976532 11111 11 134677
Q ss_pred eEEEecccCCcCHHHHHHHHHHHHHccc
Q 028315 152 LFLECSAKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 152 ~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 179 (210)
+++++||++|.|++++|++|.+.+.+..
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 164 VIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999887553
No 83
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=8.1e-30 Score=187.46 Aligned_cols=167 Identities=43% Similarity=0.738 Sum_probs=145.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
++.++|+++|++|||||||++++.+..+.. +.++.+.++....+.+++..+.+.+|||+|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 568999999999999999999999988766 6688888888888889999999999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~ 169 (210)
+|+|+.+..+++.+. .|...+.... ..+.|+++++||+|+...+.+..+++..++...++.++++||+++.|++++|+
T Consensus 83 ~v~d~~~~~s~~~~~-~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 83 LVYDIAKHLTYENVE-RWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhc-CCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999998887 5666554433 35789999999999987777778888899999999999999999999999999
Q ss_pred HHHHHHHccc
Q 028315 170 DLLYKILEVP 179 (210)
Q Consensus 170 ~i~~~~~~~~ 179 (210)
+|.+.+.+..
T Consensus 161 ~l~~~~~~~~ 170 (199)
T 2f9l_A 161 NILTEIYRIV 170 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987643
No 84
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=5.1e-32 Score=192.89 Aligned_cols=157 Identities=22% Similarity=0.342 Sum_probs=120.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEe
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYD 93 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (210)
+||+++|++|+|||||++++.++.+..+.|+.+... .. +....+.+.+|||||++.+...+..+++++|++++|+|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE--EE--EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeE--EE--EEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999888877777766332 22 23345789999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHH-----HHcCCeEEEecccCCcCHHHHH
Q 028315 94 VTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILA-----QEHKCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~l~ 168 (210)
++++.++..+. .|...+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++|
T Consensus 77 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 77 SNDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp TTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred CCCHHHHHHHH-HHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 99999999888 444444332224578999999999996542 222222211 1134579999999999999999
Q ss_pred HHHHHHHHc
Q 028315 169 KDLLYKILE 177 (210)
Q Consensus 169 ~~i~~~~~~ 177 (210)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999987753
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.5e-30 Score=190.09 Aligned_cols=157 Identities=22% Similarity=0.297 Sum_probs=125.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.+.+||+++|++|||||||++++.+..+..+.++.+.+. ..+.+++ +.+.+|||||++.+...+..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE--EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 356899999999999999999999998877777777653 3445555 789999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH------------cCCeEEEecc
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQE------------HKCLFLECSA 158 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~sa 158 (210)
|+|++++.+|+.+. .|...+.......+.|+++|+||+|+.+ .+..++....... .+++++++||
T Consensus 97 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 97 LVDAADPERFDEAR-VELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEECCChHHHHHHH-HHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 99999999999988 4554443332246789999999999965 4555555554432 3457999999
Q ss_pred cCCcCHHHHHHHHHHH
Q 028315 159 KNTEDVKQCFKDLLYK 174 (210)
Q Consensus 159 ~~~~~i~~l~~~i~~~ 174 (210)
++|.|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998753
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=6.8e-31 Score=193.15 Aligned_cols=157 Identities=19% Similarity=0.280 Sum_probs=119.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.+.++|+++|++|||||||++++.++.+..+.++.+.+. ..+.+++ +.+.+|||||++.+...+..+++.+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 346899999999999999999999888776777776653 3445555 789999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH-----------------cCCeE
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQE-----------------HKCLF 153 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 153 (210)
|+|++++.+|+.+. .|...+.......+.|+++|+||+|+.+ .+..++...+... .++++
T Consensus 99 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 99 LVDCADHERLLESK-EELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEETTCGGGHHHHH-HHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEECCCHHHHHHHH-HHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 99999999999988 4555443332246799999999999965 4566666665542 24579
Q ss_pred EEecccCCcCHHHHHHHHHHH
Q 028315 154 LECSAKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 154 ~~~sa~~~~~i~~l~~~i~~~ 174 (210)
++|||++|.|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999998764
No 87
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=2.8e-31 Score=193.56 Aligned_cols=160 Identities=18% Similarity=0.321 Sum_probs=125.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
.+.+||+++|.+|+|||||+++|.+..+.. +.++.+.++.. +....+.+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE----EEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE----EEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 458999999999999999999999988875 77787776653 2233578999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH-----HcCCeEEEecccCCcCH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ-----EHKCLFLECSAKNTEDV 164 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i 164 (210)
+|+|++++.+++.+..++...+.. ....+.|+++|+||+|+.... ..++...... ..+++++++||++|.|+
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDK-PQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNI 172 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhC-cccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence 999999999999888444444432 213678999999999996542 2222222111 23457999999999999
Q ss_pred HHHHHHHHHHHHc
Q 028315 165 KQCFKDLLYKILE 177 (210)
Q Consensus 165 ~~l~~~i~~~~~~ 177 (210)
+++|++|.+.+.+
T Consensus 173 ~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 173 DITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 88
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=1e-31 Score=195.83 Aligned_cols=161 Identities=20% Similarity=0.323 Sum_probs=124.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.+.+||+++|++|+|||||++++.++.+..+.|+.+.... .+... .+.+.+|||||++.+...+..+++.+|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLE--TLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEE--EEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 4679999999999999999999988877666666664333 33344 5789999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHH-----HHcCCeEEEecccCCcCHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILA-----QEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~ 165 (210)
|+|++++.++.....++...+. .....+.|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLD-EDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHT-CSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHh-hhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999988844444433 22235789999999999965432 22222211 2234579999999999999
Q ss_pred HHHHHHHHHHHcc
Q 028315 166 QCFKDLLYKILEV 178 (210)
Q Consensus 166 ~l~~~i~~~~~~~ 178 (210)
++|++|.+.+.+.
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 89
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1.6e-31 Score=195.61 Aligned_cols=160 Identities=21% Similarity=0.330 Sum_probs=117.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.+.+||+++|++|||||||++++.++.+..+.|+.+.. ...+.. ..+.+.+|||||++.+...+..+++.+|++++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 46799999999999999999999888776555555532 223333 34789999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHH-H----HHcCCeEEEecccCCcCHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMIL-A----QEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~----~~~~~~~~~~sa~~~~~i~ 165 (210)
|+|++++.+++.+. .|+..+.......+.|+++|+||+|+.+.. ..++.... . ...+++++++||++|.|++
T Consensus 103 v~D~~~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 103 VVDSNDRERVQESA-DELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEECCCHHHHHHHH-HHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 99999999999888 444444332223578999999999996542 22222221 1 1234579999999999999
Q ss_pred HHHHHHHHHHHc
Q 028315 166 QCFKDLLYKILE 177 (210)
Q Consensus 166 ~l~~~i~~~~~~ 177 (210)
++|++|.+.+.+
T Consensus 180 ~l~~~l~~~i~~ 191 (192)
T 2b6h_A 180 DGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHhc
Confidence 999999987753
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=8.1e-30 Score=185.26 Aligned_cols=161 Identities=24% Similarity=0.351 Sum_probs=126.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.+.+||+++|++|+|||||++++.+.....+.++.+.... .+.++ .+.+.+|||||++.+...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 4679999999999999999999998885457777775443 33444 4789999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH-----HcCCeEEEecccCCcCHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ-----EHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 165 (210)
|+|++++.+++.+..++...+. .....+.|+++|+||+|+.... ..++...... ..+++++++||++|.|++
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLV-EERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHHHHHHHHh-ChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999988844444433 2223678999999999996643 2333322221 235679999999999999
Q ss_pred HHHHHHHHHHHcc
Q 028315 166 QCFKDLLYKILEV 178 (210)
Q Consensus 166 ~l~~~i~~~~~~~ 178 (210)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988765
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=4.1e-31 Score=191.65 Aligned_cols=161 Identities=23% Similarity=0.303 Sum_probs=123.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.+.++|+++|++|||||||++++.+..+..+.++.+.+. ..+.++ .+.+.+|||||++.+...+..+++.+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEE--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 567999999999999999999998886655666666443 333444 4789999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHH-----HHcCCeEEEecccCCcCHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILA-----QEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~ 165 (210)
|+|++++.+++.+. .|...+.......+.|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 90 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 90 VIDSADRKRFEETG-QELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEETTCGGGHHHHH-HHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 99999999999888 4444443222236789999999999975432 22222221 1234579999999999999
Q ss_pred HHHHHHHHHHHcc
Q 028315 166 QCFKDLLYKILEV 178 (210)
Q Consensus 166 ~l~~~i~~~~~~~ 178 (210)
++|++|.+.+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 167 DGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877543
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.4e-30 Score=186.49 Aligned_cols=164 Identities=22% Similarity=0.316 Sum_probs=122.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.+.+||+++|.+|||||||+++|.++.+..+.++.+.+.. .+.++ ++.+.+|||||++.+...+..+++.+|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE--EEEET--TEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 3579999999999999999999998877666666664433 33444 3789999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH-----HcCCeEEEecccCCcCHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ-----EHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 165 (210)
|+|++++.+++.+. .|...+.......+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|++
T Consensus 90 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 90 VVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEETTCTTTHHHHH-HHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEeCCCHHHHHHHH-HHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 99999999999988 45554443322367899999999999653 33444433322 235689999999999999
Q ss_pred HHHHHHHHHHHccchh
Q 028315 166 QCFKDLLYKILEVPSL 181 (210)
Q Consensus 166 ~l~~~i~~~~~~~~~~ 181 (210)
++|++|.+.+...+..
T Consensus 167 ~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLEH 182 (187)
T ss_dssp HHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999988765543
No 93
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=2.4e-28 Score=178.56 Aligned_cols=165 Identities=43% Similarity=0.737 Sum_probs=145.4
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
..++.++|+++|++|||||||++++.+..+.. +.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 34678999999999999999999999988766 77888888888888899999999999999999999999999999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHH
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 167 (210)
+++|+|..+..+++.+. .|...+.... ....|+++++||+|+.+.+....+++..++...++.++++||+++.+++++
T Consensus 105 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVE-RWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA 182 (191)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999998877 5666554433 357899999999999876777788888999999999999999999999999
Q ss_pred HHHHHHHH
Q 028315 168 FKDLLYKI 175 (210)
Q Consensus 168 ~~~i~~~~ 175 (210)
|++|.+.+
T Consensus 183 ~~~l~~~i 190 (191)
T 1oix_A 183 FQTILTEI 190 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998865
No 94
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=3.7e-30 Score=186.47 Aligned_cols=158 Identities=23% Similarity=0.351 Sum_probs=122.5
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
..+.+||+++|.+|+|||||+++|.+..+..+.++.+.+.. .+.+.+ +.+.+|||||++.+...+..+++.+|+++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 35689999999999999999999999888556677665443 333443 78999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHH-----HHcCCeEEEecccCCcCH
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILA-----QEHKCLFLECSAKNTEDV 164 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i 164 (210)
+|+|++++.+++.+..++...+... ...+.|+++|+||+|+... ...++..... ...+++++++||++|.|+
T Consensus 94 ~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 170 (181)
T 2h17_A 94 VVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 170 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 9999999999998884444444322 1367899999999999653 3333333332 123557999999999999
Q ss_pred HHHHHHHHHH
Q 028315 165 KQCFKDLLYK 174 (210)
Q Consensus 165 ~~l~~~i~~~ 174 (210)
+++|++|.+.
T Consensus 171 ~~l~~~l~~~ 180 (181)
T 2h17_A 171 CQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 95
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.9e-29 Score=183.08 Aligned_cols=160 Identities=22% Similarity=0.274 Sum_probs=123.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCC-CCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNS-VHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGI 88 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (210)
.+.+||+++|.+|+|||||+++|.+.. +.. +.++.+.. ...+.++ ++.+.+|||||++.+...+..+++.+|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 468999999999999999999998887 333 66666633 3334444 37899999999999999999999999999
Q ss_pred EEEEeCCCHhhHHHHHHHHHHHHhhhccC--CCCcEEEEEeCCCCCCCCccCHHHHHHHHH-----HcCCeEEEecccCC
Q 028315 89 ILVYDVTRRETFTNLSSVWAKEVELYSTN--QDCVKILVGNKVDRDSERAVTREEGMILAQ-----EHKCLFLECSAKNT 161 (210)
Q Consensus 89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~ 161 (210)
++|+|++++.+++.+.. |...+...... .+.|+++|+||+|+.+. ...++...... ..+++++++||++|
T Consensus 95 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 99999999999998884 44444333212 57899999999999653 34445544442 23568999999999
Q ss_pred cCHHHHHHHHHHHHHc
Q 028315 162 EDVKQCFKDLLYKILE 177 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~~ 177 (210)
.|++++|++|.+.+.+
T Consensus 172 ~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 172 EGLQEGVDWLQDQIQT 187 (190)
T ss_dssp BTHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999987643
No 96
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=8.2e-29 Score=195.28 Aligned_cols=164 Identities=27% Similarity=0.493 Sum_probs=141.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
..++|+++|.+|+|||||++++.+..+.. +.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 45899999999999999999999888766 556665444 4556778889999999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------CccCHHHHHHHHHHcCC-eEEEec
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE------------RAVTREEGMILAQEHKC-LFLECS 157 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 157 (210)
|||++++.+++.+...|...+.... .+.|+++|+||+|+... +.+..+++..++...++ +++++|
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 9999999999998767877776654 48899999999998653 56778888899999987 899999
Q ss_pred ccCCcCHHHHHHHHHHHHHcc
Q 028315 158 AKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 158 a~~~~~i~~l~~~i~~~~~~~ 178 (210)
|++|.|++++|++|.+.+...
T Consensus 311 a~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHhcC
Confidence 999999999999999988743
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=4.2e-30 Score=188.56 Aligned_cols=164 Identities=24% Similarity=0.255 Sum_probs=118.6
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCCcccccch---hhhhc
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVG-GKRLKLTIWDTAGQERFGTLT---SSYYR 83 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~---~~~~~ 83 (210)
....+.+||+++|.+|||||||++++.+............+.......+. +..+.+.+|||||++.|.... ..+++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 34467899999999999999999988664333222222222222222333 566899999999999987766 89999
Q ss_pred cccEEEEEEeCCCH--hhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-------CCccCHHHHHHHHH----HcC
Q 028315 84 GAHGIILVYDVTRR--ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS-------ERAVTREEGMILAQ----EHK 150 (210)
Q Consensus 84 ~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~~~~~~~----~~~ 150 (210)
++|++|+|||++++ +++..+. .|+..+... ..+.|+++|+||+|+.. .+.+..++...++. ..+
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~-~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLH-ITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHH-HHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred cCCEEEEEEECCCchHHHHHHHH-HHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 99999999999997 5555555 444443222 46899999999999754 23455556667777 668
Q ss_pred CeEEEecccCCcCHHHHHHHHHHHH
Q 028315 151 CLFLECSAKNTEDVKQCFKDLLYKI 175 (210)
Q Consensus 151 ~~~~~~sa~~~~~i~~l~~~i~~~~ 175 (210)
+++++|||++ .|++++|..+++.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 8999999999 99999999999865
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=2.2e-30 Score=187.63 Aligned_cols=160 Identities=26% Similarity=0.371 Sum_probs=121.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.+.+||+++|++|||||||++++.++.+..+.++.+.... .+.++ +..+.+|||||++.+...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4679999999999999999999998877556677764433 33444 3789999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH-----HcCCeEEEecccCCcCHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ-----EHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 165 (210)
|+|++++.+++.+. .|...+.......+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|++
T Consensus 92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 92 VVDSTDKDRMSTAS-KELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEETTCTTTHHHHH-HHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEECCCHHHHHHHH-HHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 99999999999888 45444443322467899999999999653 33333333321 123479999999999999
Q ss_pred HHHHHHHHHHHc
Q 028315 166 QCFKDLLYKILE 177 (210)
Q Consensus 166 ~l~~~i~~~~~~ 177 (210)
++|++|.+.+.+
T Consensus 169 ~l~~~l~~~~~~ 180 (183)
T 1moz_A 169 EGLDWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 99
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=7.3e-30 Score=185.46 Aligned_cols=164 Identities=21% Similarity=0.383 Sum_probs=121.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhC--CCCC-CCCceeeEEEEEEEEE---CCeEEEEEEEeCCCCcccccchhhhhcccc
Q 028315 13 SFKILLIGDSGVGKSSILLSLISN--SVHD-PSPTIGVDFKIKLLTV---GGKRLKLTIWDTAGQERFGTLTSSYYRGAH 86 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~--~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (210)
.+||+++|++|||||||+++|.+. .+.. +.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++.+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999885 3433 6677777766555443 335678999999999999999999999999
Q ss_pred EEEEEEeCCCH-hhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHHcCCe----EEEecc
Q 028315 87 GIILVYDVTRR-ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT---REEGMILAQEHKCL----FLECSA 158 (210)
Q Consensus 87 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~sa 158 (210)
++++|||++++ .++..+. .|+..+.... .+.|+++|+||+|+...+.+. .+....++..++++ ++++||
T Consensus 82 ~~i~v~d~~~~~~s~~~~~-~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMK-PWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNA 158 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHH-HHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCT
T ss_pred EEEEEEeCCcchhHHHHHH-HHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEec
Confidence 99999999997 4788887 6777665443 478999999999986544332 23344555556776 999999
Q ss_pred cCCc-CHHHHHHHHHHHHHccc
Q 028315 159 KNTE-DVKQCFKDLLYKILEVP 179 (210)
Q Consensus 159 ~~~~-~i~~l~~~i~~~~~~~~ 179 (210)
++|. +++++++.|.+.+.+.+
T Consensus 159 ~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 159 TEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp TSCCHHHHHHHHHHHHHHHCC-
T ss_pred ccCchhHHHHHHHHHHHHhccc
Confidence 9996 99999999998887543
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=8.2e-32 Score=198.79 Aligned_cols=162 Identities=28% Similarity=0.530 Sum_probs=134.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
.+.+||+++|.+|+|||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 467999999999999999999999887765 445554333 344456677788999999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC------------ccCHHHHHHHHHHcCC-eEEEe
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER------------AVTREEGMILAQEHKC-LFLEC 156 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 156 (210)
+|+|++++.+++.+...|...+.... .+.|+++|+||+|+.+.+ .+..++...++...++ +++++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 99999999999988756777776543 378999999999997543 4555667777777887 89999
Q ss_pred cccCCcCHHHHHHHHHHHH
Q 028315 157 SAKNTEDVKQCFKDLLYKI 175 (210)
Q Consensus 157 sa~~~~~i~~l~~~i~~~~ 175 (210)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999998765
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=2.5e-29 Score=186.68 Aligned_cols=161 Identities=20% Similarity=0.241 Sum_probs=118.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCe-EEEEEEEeCCCCccccc-chhhhhccccEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGK-RLKLTIWDTAGQERFGT-LTSSYYRGAHGI 88 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 88 (210)
.+.+||+++|++|+|||||+++|.+..+....++....+.. +.+++. .+.+.+|||||++.+.. ++..+++.+|++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 46799999999999999999999999887755555544443 455543 68899999999999987 788889999999
Q ss_pred EEEEeCCCHh-hHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCCCccCHHHHHHHH--------------------
Q 028315 89 ILVYDVTRRE-TFTNLSSVWAKEVELYS-TNQDCVKILVGNKVDRDSERAVTREEGMILA-------------------- 146 (210)
Q Consensus 89 i~v~d~~~~~-~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-------------------- 146 (210)
++|+|+++.. ++.....+|...+.... ...+.|+++|+||+|+........ ....+.
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKL-IQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHH-HHHHHHHHHHHHHHHCC---------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHH-HHHHHHHHHHHHhccchhccccccCC
Confidence 9999999854 46666656776665432 235789999999999976543211 111111
Q ss_pred ---------------H-Hc--CCeEEEecccCC------cCHHHHHHHHHHH
Q 028315 147 ---------------Q-EH--KCLFLECSAKNT------EDVKQCFKDLLYK 174 (210)
Q Consensus 147 ---------------~-~~--~~~~~~~sa~~~------~~i~~l~~~i~~~ 174 (210)
. .+ +++|++|||++| .||+++|++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0 11 567999999999 9999999999875
No 102
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=199.98 Aligned_cols=160 Identities=23% Similarity=0.344 Sum_probs=120.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILV 91 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (210)
+.+||+|+|.+|+|||||+++|.+..+....+|.+..+. .+....+.+.||||||++.+...+..+++.+|++|+|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~----~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE----EEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE----EEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 468999999999999999999988887655455554433 2333457899999999999999999999999999999
Q ss_pred EeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH-----HcCCeEEEecccCCcCHHH
Q 028315 92 YDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ-----EHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~ 166 (210)
||++++.+|..+..+|...+.... ..+.|+++|+||+|+.+... .++...... ..+++++++||++|.||++
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 999999999998866666655432 46889999999999975432 222222221 1245799999999999999
Q ss_pred HHHHHHHHHHcc
Q 028315 167 CFKDLLYKILEV 178 (210)
Q Consensus 167 l~~~i~~~~~~~ 178 (210)
+|++|.+.+.+.
T Consensus 317 l~~~l~~~l~~~ 328 (329)
T 3o47_A 317 GLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999988653
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.96 E-value=1.5e-28 Score=203.84 Aligned_cols=165 Identities=21% Similarity=0.332 Sum_probs=127.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIIL 90 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (210)
.+.+||+++|.+|||||||+++|.+..+..+.+|.+.++.. +...++.+.+|||||++.+...+..+++.+|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEE----EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEE----EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 45799999999999999999999999987777887766653 33355789999999999999999999999999999
Q ss_pred EEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH-----HcCCeEEEecccCCcCHH
Q 028315 91 VYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQ-----EHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 91 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 165 (210)
|||++++.+|+.+..+|...+.. ....++|++||+||+|+.... ..++...... ..+++++++||++|.|++
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTS-GGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEECcchhHHHHHHHHHHHHhhh-hhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 99999999999998555554443 224689999999999996532 2322222211 123469999999999999
Q ss_pred HHHHHHHHHHHccchhh
Q 028315 166 QCFKDLLYKILEVPSLL 182 (210)
Q Consensus 166 ~l~~~i~~~~~~~~~~~ 182 (210)
++|++|.+.+.+.....
T Consensus 473 ~l~~~l~~~~~~~~~~~ 489 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLAAA 489 (497)
T ss_dssp HHHHHHHHHCC------
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999998876555443
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=7.4e-28 Score=171.90 Aligned_cols=152 Identities=20% Similarity=0.202 Sum_probs=111.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc------chhhhhc--
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT------LTSSYYR-- 83 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~-- 83 (210)
.++|+++|++|+|||||+++|.+..+.. ..++.+.+.....+.+++ ..+.+|||||++.+.. ....+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 5899999999999999999998876543 334333334444444554 5789999999887752 3355554
Q ss_pred cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcC
Q 028315 84 GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTED 163 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 163 (210)
.+|++++|+|+++.... . .|...+.. .+.|+++|+||+|+...+.+.. +...++..++++++++||++|.|
T Consensus 81 ~~~~~i~v~D~~~~~~~---~-~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~ 151 (165)
T 2wji_A 81 KPDLVVNIVDATALERN---L-YLTLQLME----MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMG 151 (165)
T ss_dssp CCSEEEEEEETTCHHHH---H-HHHHHHHH----TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBS
T ss_pred CCCEEEEEecCCchhHh---H-HHHHHHHh----cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCC
Confidence 89999999999986543 2 34444432 4689999999999865444443 35677778889999999999999
Q ss_pred HHHHHHHHHHHH
Q 028315 164 VKQCFKDLLYKI 175 (210)
Q Consensus 164 i~~l~~~i~~~~ 175 (210)
++++|+++.+.+
T Consensus 152 v~~l~~~l~~~~ 163 (165)
T 2wji_A 152 IEELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 105
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=1.1e-27 Score=187.27 Aligned_cols=173 Identities=18% Similarity=0.142 Sum_probs=135.0
Q ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCe-EEEEEEEeCCCCcccc----------c
Q 028315 8 NSYDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGK-RLKLTIWDTAGQERFG----------T 76 (210)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~----------~ 76 (210)
++.++.-.|+++|.+|||||||+|+|++..+....+.++++........... ..++.||||||+..+. .
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 4456788999999999999999999999988766666655555444334333 5789999999986544 4
Q ss_pred chhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcC--CeEE
Q 028315 77 LTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHK--CLFL 154 (210)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~ 154 (210)
.+..+++.+|++++|+|++++.++.... .|...+.. .+.|+++|+||+|+........+....+...++ .+++
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~-~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEE-IYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHH-HHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 5567788999999999999988777766 55666553 468999999999997444555566667777765 6799
Q ss_pred EecccCCcCHHHHHHHHHHHHHccchhhhcc
Q 028315 155 ECSAKNTEDVKQCFKDLLYKILEVPSLLEQG 185 (210)
Q Consensus 155 ~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~ 185 (210)
++||++|.|++++|+++.+.+.+.+..++.+
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~ 190 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPEGEPLFPED 190 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCBCCCSSCTT
T ss_pred EEeCCCCCCHHHHHHHHHHhCccCCCCCCcc
Confidence 9999999999999999999998877666554
No 106
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=6.5e-29 Score=189.37 Aligned_cols=167 Identities=20% Similarity=0.271 Sum_probs=120.3
Q ss_pred CCCCceEEEEEEEcCC---------CCcHHHHHHHHhhC---CCCC-CCCce-eeEEEEEE--------------EEECC
Q 028315 7 NNSYDYSFKILLIGDS---------GVGKSSILLSLISN---SVHD-PSPTI-GVDFKIKL--------------LTVGG 58 (210)
Q Consensus 7 ~~~~~~~~~i~i~G~~---------~~GKSsli~~l~~~---~~~~-~~~~~-~~~~~~~~--------------~~~~~ 58 (210)
.....+.+||+++|.+ |||||||+++|.+. .+.. +.+++ +.++.... ..+++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 3444678999999999 99999999999984 3433 44443 22221111 12456
Q ss_pred eEEEEEEEe-----------------------CCCCcccccchhhhhc---------------------cccEEEEEEeC
Q 028315 59 KRLKLTIWD-----------------------TAGQERFGTLTSSYYR---------------------GAHGIILVYDV 94 (210)
Q Consensus 59 ~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~ 94 (210)
..+.+.+|| ++|++.|..++..+++ ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 778999999 6667777777777776 79999999999
Q ss_pred CCH--hhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH-cCCeEEEecccCCcCHHHHHHHH
Q 028315 95 TRR--ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQE-HKCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 95 ~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~l~~~i 171 (210)
+++ .+|+.+. .|+..+.......+.|+++|+||+|+...+.+ ++...++.. .+++++++||++|.|++++|++|
T Consensus 173 t~~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 173 SRGMNRNFDDQL-KFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp BC----CHHHHH-HHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred CCCchhhHHHHH-HHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence 998 8999988 67766655422357899999999999655444 466667665 47899999999999999999999
Q ss_pred HHHHH
Q 028315 172 LYKIL 176 (210)
Q Consensus 172 ~~~~~ 176 (210)
.+.+.
T Consensus 250 ~~~l~ 254 (255)
T 3c5h_A 250 VQLID 254 (255)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98764
No 107
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=9.3e-28 Score=180.06 Aligned_cols=168 Identities=15% Similarity=0.040 Sum_probs=115.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc---------ccchhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF---------GTLTSS 80 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~ 80 (210)
+..++|+++|.+|||||||+++|++..+.. ..+....+......... ...+.+|||||.... ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 467999999999999999999999887642 22222222222222223 367999999998321 112234
Q ss_pred hhccccEEEEEEeCCCHhhHHHHH-HHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHH---HHHHHHHHcC--CeEE
Q 028315 81 YYRGAHGIILVYDVTRRETFTNLS-SVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTRE---EGMILAQEHK--CLFL 154 (210)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~ 154 (210)
++..+|++++|+|++++.++.... ..|...+... ..+.|+++|+||+|+.+.+.+..+ ....+....+ ++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 577889999999999987765221 1344443321 247899999999999877666654 3455566666 7899
Q ss_pred EecccCCcCHHHHHHHHHHHHHccchhh
Q 028315 155 ECSAKNTEDVKQCFKDLLYKILEVPSLL 182 (210)
Q Consensus 155 ~~sa~~~~~i~~l~~~i~~~~~~~~~~~ 182 (210)
++||++|.|++++|++|.+.+.+.+...
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~~~~~ 210 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKNDQAES 210 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988665543
No 108
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=2.2e-27 Score=170.95 Aligned_cols=160 Identities=20% Similarity=0.215 Sum_probs=117.3
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHG 87 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (210)
...+.++|+++|++|+|||||+++|.+..+.. ..++.+.+.....+.+++. .+.+|||||++.+...+..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 34567999999999999999999999888766 4455554444445555654 57799999999999999899999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH-------cC--CeEEEecc
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQE-------HK--CLFLECSA 158 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~--~~~~~~sa 158 (210)
+++|+|++++...+... .+ ..+. ..+.|+++|+||+|+... ..++....... ++ ++++++||
T Consensus 82 ~i~v~d~~~~~~~~~~~-~l-~~~~----~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 82 VILVVAADDGVMPQTVE-AI-NHAK----AANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp EEEEEETTCCCCHHHHH-HH-HHHG----GGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred EEEEEECCCCCcHHHHH-HH-HHHH----hCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 99999999843222221 11 1111 257899999999999653 22222222222 12 47999999
Q ss_pred cCCcCHHHHHHHHHHHHHccc
Q 028315 159 KNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 159 ~~~~~i~~l~~~i~~~~~~~~ 179 (210)
++|.|++++|++|.+.+...+
T Consensus 153 ~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 153 KTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp SSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhhhhhc
Confidence 999999999999998876543
No 109
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=1.2e-27 Score=187.00 Aligned_cols=167 Identities=23% Similarity=0.332 Sum_probs=131.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC----CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc-----ccchhhhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD----PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF-----GTLTSSYY 82 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~ 82 (210)
..+||+++|++|||||||+++++++.... +.+|.+..+.. ..+++ .+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 46899999999999999999998874322 45555555443 33444 688999999999988 78888999
Q ss_pred ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCC--CCc----cCHHHHHHHHHHcC---Ce
Q 028315 83 RGAHGIILVYDVTRRETFTNLSSVWAKEVELYS-TNQDCVKILVGNKVDRDS--ERA----VTREEGMILAQEHK---CL 152 (210)
Q Consensus 83 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~ 152 (210)
+++|++++|||++++.+++.+. .|...+.... ...+.|+++|+||+|+.. .+. +..+++..++..+| ++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~-~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~ 157 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI 157 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHH-HHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred ccCCEEEEEEECCChhhHHHHH-HHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence 9999999999999999999887 5655443321 146799999999999976 343 55567788888887 68
Q ss_pred EEEecccCCcCHHHHHHHHHHHHHccchhhh
Q 028315 153 FLECSAKNTEDVKQCFKDLLYKILEVPSLLE 183 (210)
Q Consensus 153 ~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~ 183 (210)
++++||++ .++.++|..+++.+.......+
T Consensus 158 ~~~tSa~~-~~i~e~~~~iv~~li~~~~~le 187 (307)
T 3r7w_A 158 GFPTSIWD-ESLYKAWSQIVCSLIPNMSNHQ 187 (307)
T ss_dssp EEECCTTS-SHHHHHHHHHHHTTCSCHHHHH
T ss_pred EEEeeecC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999 8999999999988776555433
No 110
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=2.4e-27 Score=173.32 Aligned_cols=158 Identities=17% Similarity=0.216 Sum_probs=110.9
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCC----------Ccccccch
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAG----------QERFGTLT 78 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~~ 78 (210)
....++|+++|.+|+|||||+++|.+..+.. +.++.+.+........+. .+.+||||| .+.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 3567999999999999999999999887544 667776666655555544 589999999 56666677
Q ss_pred hhhhccc---cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCH--HHHHH-HHHHcCCe
Q 028315 79 SSYYRGA---HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTR--EEGMI-LAQEHKCL 152 (210)
Q Consensus 79 ~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~ 152 (210)
..+++.+ |++++|+|++++.++.... +...+. ..+.|+++|+||+|+.+.+.+.. ++... +....+.+
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~----~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLK----YYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence 7777776 9999999999887766543 223332 25789999999999976554432 22222 22234678
Q ss_pred EEEecccCCcCHHHHHHHHHHHHH
Q 028315 153 FLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 153 ~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
++++||++|.|++++|++|.+.+.
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred eEEEEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999988764
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.3e-26 Score=168.49 Aligned_cols=158 Identities=19% Similarity=0.179 Sum_probs=119.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc------cchhhhhc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG------TLTSSYYR 83 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~ 83 (210)
.+.++|+++|++|||||||+++|.+..+.. ..++.+.+.....+...+ ..+.+|||||++.+. ..+..+++
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 367999999999999999999998866433 445545455555555554 678999999998774 34555664
Q ss_pred --cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCC
Q 028315 84 --GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNT 161 (210)
Q Consensus 84 --~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 161 (210)
.+|++++|+|.++. +... .|...+. ..+.|+++|+||+|+...+.+. ++...++..++++++++||+++
T Consensus 83 ~~~~~~~i~v~d~~~~---~~~~-~~~~~~~----~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~ 153 (188)
T 2wjg_A 83 NEKPDLVVNIVDATAL---ERNL-YLTLQLM----EMGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKK 153 (188)
T ss_dssp HHCCSEEEEEEEGGGH---HHHH-HHHHHHH----TTTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGT
T ss_pred ccCCCEEEEEecchhH---HHHH-HHHHHHH----hcCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCC
Confidence 49999999998864 3444 4555443 2578999999999986554444 3566777888899999999999
Q ss_pred cCHHHHHHHHHHHHHccc
Q 028315 162 EDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~~~~ 179 (210)
.|++++|+++.+.+.+..
T Consensus 154 ~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 154 MGIEELKKAISIAVKDKK 171 (188)
T ss_dssp BSHHHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999999887665
No 112
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=2.7e-28 Score=189.54 Aligned_cols=163 Identities=21% Similarity=0.238 Sum_probs=123.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC----CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc---chhhhhccccE
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD----PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT---LTSSYYRGAHG 87 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~ 87 (210)
||+++|+.|||||||++++.+..+.. ..+|.+.++.. +. ..+.+++|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654433 45677766653 22 348899999999999964 35889999999
Q ss_pred EEEEEeCCCHhhHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCC-------CccCHHHHHHHHHH----cCCeEEE
Q 028315 88 IILVYDVTRRETFTNLSSVWAKEVELY-STNQDCVKILVGNKVDRDSE-------RAVTREEGMILAQE----HKCLFLE 155 (210)
Q Consensus 88 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~ 155 (210)
+|+|||++++ +.....+|...+... ...++.|+++++||+|+..+ +.+..+++..+++. .++++++
T Consensus 76 ~IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 76 LVYVIDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp EEEECCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred EEEEEECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 9999999998 333332554444321 11468999999999999754 34666666677764 5788999
Q ss_pred ecccCCcCHHHHHHHHHHHHHccchhhhcc
Q 028315 156 CSAKNTEDVKQCFKDLLYKILEVPSLLEQG 185 (210)
Q Consensus 156 ~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~ 185 (210)
|||++ .+|.++|..+++.+....+..+..
T Consensus 154 TSAkd-~nV~eAFs~iv~~li~~~~~le~~ 182 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLIPELSFLENM 182 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSSTTHHHHHHH
T ss_pred eccCC-CcHHHHHHHHHHHHHhhHHHHHHH
Confidence 99998 599999999999988777666654
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=1.6e-27 Score=173.51 Aligned_cols=158 Identities=23% Similarity=0.291 Sum_probs=115.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCC-----------Ccccccchhhh
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAG-----------QERFGTLTSSY 81 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~~~ 81 (210)
+||+++|++|+|||||+++|.+..+.. +.++. +.....+... .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGV--TRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTC--TTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCc--cceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999887655 33433 2333333333 688999999 55666667777
Q ss_pred hcc-ccEEEEEEeCCCHhhHHHHHHHHHHH--------HhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCe
Q 028315 82 YRG-AHGIILVYDVTRRETFTNLSSVWAKE--------VELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCL 152 (210)
Q Consensus 82 ~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~--------~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (210)
++. ++++++|+++.+..++..+...|... +.......+.|+++|+||+|+...+ .++...++..++.+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 77777777777777777764466542 2122213578999999999997654 55677777777764
Q ss_pred -------EEEecccCCcCHHHHHHHHHHHHHccch
Q 028315 153 -------FLECSAKNTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 153 -------~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 180 (210)
++++||++|.|++++|++|.+.+.+.+.
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 7999999999999999999998876544
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=3.6e-27 Score=167.13 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=105.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc-------ccchhhhhcc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF-------GTLTSSYYRG 84 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~ 84 (210)
.||+++|++|+|||||++++.+..+.. ..+....+.........+. .+.+|||||.+.+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 589999999999999999999887543 2333333344444445543 7889999998763 3445567889
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEecccCCcC
Q 028315 85 AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC-LFLECSAKNTED 163 (210)
Q Consensus 85 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~ 163 (210)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.. ++...+. .+++ +++++||++|.|
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~----~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR----KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH----HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBS
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh----cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCC
Confidence 999999999998644332 123333332 468999999999996542 2233344 5677 799999999999
Q ss_pred HHHHHHHHHHHH
Q 028315 164 VKQCFKDLLYKI 175 (210)
Q Consensus 164 i~~l~~~i~~~~ 175 (210)
++++|+++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998764
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=1.3e-26 Score=176.67 Aligned_cols=155 Identities=18% Similarity=0.144 Sum_probs=116.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccc------hhhhh-
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTL------TSSYY- 82 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~- 82 (210)
.+.++|+++|++|+|||||+++|.+..+.. ..+.. +.......+...+..+.+|||||...+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~--tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGV--TVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTS--CCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCc--eEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 467999999999999999999998877543 33333 333333333333468999999998877653 24555
Q ss_pred -ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCC
Q 028315 83 -RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNT 161 (210)
Q Consensus 83 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 161 (210)
..+|++++|+|+++..+.. +|...+. ..+.|+++|+||+|+...+.+.. +...+...++++++++||++|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~----~~~~~l~----~~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g 151 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL----YLLLEIL----EMEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTG 151 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH----HHHHHHH----TTTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTC
T ss_pred hcCCCEEEEEeCCCchhhHH----HHHHHHH----hcCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCC
Confidence 5899999999999875432 2333333 24789999999999865555543 367788888999999999999
Q ss_pred cCHHHHHHHHHHHHH
Q 028315 162 EDVKQCFKDLLYKIL 176 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~ 176 (210)
.|++++|+++.+.+.
T Consensus 152 ~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 152 EGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhh
Confidence 999999999999875
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=4.4e-27 Score=196.53 Aligned_cols=165 Identities=25% Similarity=0.309 Sum_probs=126.5
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEE------EEE--CCeEEEEEEEeCCCCcccccchhh
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKL------LTV--GGKRLKLTIWDTAGQERFGTLTSS 80 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~------~~~--~~~~~~~~l~Dt~G~~~~~~~~~~ 80 (210)
..+.+||+++|.+|||||||++++.+..+.. +.++.+.++.... +.+ .+..+.+.+|||||++.+...+..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4678999999999999999999999988766 6677777666442 111 233578999999999999999999
Q ss_pred hhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccC
Q 028315 81 YYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKN 160 (210)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 160 (210)
+++++|++++|+|+++.+ ... +|...+.... .+.|+++|+||+|+...+.+..++...+....+.+++++||++
T Consensus 118 ~l~~~d~ii~V~D~s~~~---~~~-~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~ 191 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDS---NKH-YWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKN 191 (535)
T ss_dssp HHHSSEEEEEEECGGGGG---GHH-HHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC--
T ss_pred HccCCcEEEEEEeCCCch---hHH-HHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCc
Confidence 999999999999998764 344 6777776654 4789999999999988788888888888888899999999999
Q ss_pred CcCHHHHHHHHHHHHHccch
Q 028315 161 TEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 161 ~~~i~~l~~~i~~~~~~~~~ 180 (210)
|.|++++++++.+.+.+.+.
T Consensus 192 g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 192 GDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp ---CTTHHHHHHHHHTCTTS
T ss_pred ccCHHHHHHHHHHHHhcccc
Confidence 99999999999999887655
No 117
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=3.9e-26 Score=166.65 Aligned_cols=162 Identities=19% Similarity=0.192 Sum_probs=117.4
Q ss_pred CCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC----------Cccccc
Q 028315 7 NNSYDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAG----------QERFGT 76 (210)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~ 76 (210)
..+....+||+++|.+|+|||||+++|++..+....++.+.+.......... .+.+||||| .+.+..
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred hCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence 3444567899999999999999999999988766777777666655444443 478999999 555666
Q ss_pred chhhhhccc---cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCc--cCHHHHHHHHHHc-C
Q 028315 77 LTSSYYRGA---HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERA--VTREEGMILAQEH-K 150 (210)
Q Consensus 77 ~~~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~-~ 150 (210)
.+..+++.+ |++++|+|+++..+..... +...+. ..+.|+++|+||+|+.+... ...++...+.... +
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~----~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMK----SLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHH----HcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence 667777665 9999999998764433221 222222 13689999999999865432 2233444445543 4
Q ss_pred CeEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 151 CLFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 151 ~~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
++++++||++|.|++++|++|.+.+.+
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999999988753
No 118
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=1.5e-26 Score=177.48 Aligned_cols=154 Identities=19% Similarity=0.118 Sum_probs=117.1
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc------cchhhhhc--
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG------TLTSSYYR-- 83 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-- 83 (210)
+.++|+++|++|||||||+++|.+.... ....++.++......+.. +..+.+|||||...+. .....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 4589999999999999999999887532 223345555555555665 6789999999998775 34556665
Q ss_pred cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcC
Q 028315 84 GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTED 163 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 163 (210)
.+|++++|+|+++.++.. +|...+.. .+.|+++|+||+|+...+.+. .+...+...++++++++||++|.|
T Consensus 80 ~~d~vi~V~D~t~~e~~~----~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~g 150 (272)
T 3b1v_A 80 RADSILNVVDATNLERNL----YLTTQLIE----TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTG 150 (272)
T ss_dssp CCSEEEEEEEGGGHHHHH----HHHHHHHH----TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred CCCEEEEEecCCchHhHH----HHHHHHHh----cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence 699999999999865432 34443332 578999999999986544444 345677888899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028315 164 VKQCFKDLLYKIL 176 (210)
Q Consensus 164 i~~l~~~i~~~~~ 176 (210)
++++|+++.+.+.
T Consensus 151 i~el~~~i~~~~~ 163 (272)
T 3b1v_A 151 VDQVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 119
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=5.9e-27 Score=168.39 Aligned_cols=153 Identities=20% Similarity=0.152 Sum_probs=109.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccch--------hhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLT--------SSY 81 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 81 (210)
..++|+++|++|+|||||+++|.+..+.. ..+..+.++....+.+++. .+.+|||||.+.+.... ..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 34799999999999999999998876533 2333333444555566654 57899999986543211 135
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCC
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNT 161 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 161 (210)
++.+|++++|+|++++.+++.. .|...+.... ..+.|+++|+||+|+..... .++...+.+++++||++|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g 150 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDPA--EIWPEFIARL-PAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTG 150 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSHH--HHCHHHHHHS-CTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTC
T ss_pred HHhCCEEEEEEECCCCCCHHHH--HHHHHHHHhc-ccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCC
Confidence 7899999999999998877633 4555554433 35789999999999854311 111224668999999999
Q ss_pred cCHHHHHHHHHHHHH
Q 028315 162 EDVKQCFKDLLYKIL 176 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~ 176 (210)
.|++++|++|.+.+.
T Consensus 151 ~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 151 EGVDVLRNHLKQSMG 165 (172)
T ss_dssp TTHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999988764
No 120
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=7.2e-26 Score=176.11 Aligned_cols=167 Identities=22% Similarity=0.195 Sum_probs=116.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc--------cccchhhhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER--------FGTLTSSYY 82 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~ 82 (210)
-+..+|+++|.+|+|||||+|+|++..+....+.++++.......+.....+++||||||... +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 456789999999999999999999988765444333333322222223357899999999766 334455678
Q ss_pred ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCc-cCHHHHHHHHHHcCCeEEEecccCC
Q 028315 83 RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERA-VTREEGMILAQEHKCLFLECSAKNT 161 (210)
Q Consensus 83 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~ 161 (210)
+.+|++++|+|++++.+... .++...+.... .+.|+++|+||+|+..... + .+....+ ....+++++||++|
T Consensus 85 ~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~--~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~--~~~~~~~~iSA~~g 157 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPED--ELVARALKPLV--GKVPILLVGNKLDAAKYPEEA-MKAYHEL--LPEAEPRMLSALDE 157 (301)
T ss_dssp SSCSEEEEEEETTSCCCHHH--HHHHHHHGGGT--TTSCEEEEEECGGGCSSHHHH-HHHHHHT--STTSEEEECCTTCH
T ss_pred hcCCEEEEEEECCCCCChHH--HHHHHHHHhhc--CCCCEEEEEECcccCCchHHH-HHHHHHh--cCcCcEEEEeCCCC
Confidence 99999999999998754432 23334444322 4789999999999865433 2 1112222 11346999999999
Q ss_pred cCHHHHHHHHHHHHHccchhhhc
Q 028315 162 EDVKQCFKDLLYKILEVPSLLEQ 184 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~~~~~~~~~ 184 (210)
.|+++++++|.+.+.+.+..+++
T Consensus 158 ~gv~~l~~~l~~~l~~~~~~y~~ 180 (301)
T 1wf3_A 158 RQVAELKADLLALMPEGPFFYPE 180 (301)
T ss_dssp HHHHHHHHHHHTTCCBCCCSSCT
T ss_pred CCHHHHHHHHHHhcccCCCCCCc
Confidence 99999999999988776655544
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=6.8e-26 Score=169.08 Aligned_cols=164 Identities=19% Similarity=0.111 Sum_probs=113.1
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCCc----------ccccc
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSV-HDPSPTIGVDFKIKLLTVG-GKRLKLTIWDTAGQE----------RFGTL 77 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~----------~~~~~ 77 (210)
....++|+++|.+|+|||||+++|++..+ ....++.+.+.......+. .....+.+|||||.. .+...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 34678999999999999999999998873 3445555555554444444 445689999999943 33445
Q ss_pred hhhhhcc---ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCH--HHH-HHHHHH---
Q 028315 78 TSSYYRG---AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTR--EEG-MILAQE--- 148 (210)
Q Consensus 78 ~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~-~~~~~~--- 148 (210)
...+++. +|++++|+|++++.+.. ...|...+.. .+.|+++|+||+|+........ ++. ..+...
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~--~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTEL--DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHH--HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHH--HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 5556655 88899999999864422 2234454442 5689999999999875433211 111 222222
Q ss_pred ---cCCeEEEecccCCcCHHHHHHHHHHHHHccc
Q 028315 149 ---HKCLFLECSAKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 149 ---~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 179 (210)
.+.+++++||++|.|++++|++|.+.+....
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4568999999999999999999999886543
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=3e-25 Score=168.95 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=113.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc----------chhhhh-
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT----------LTSSYY- 82 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~- 82 (210)
+|+++|++|+|||||+++|.+..... ..+..+.+.....+.+.+. .+.+|||||...+.. ....++
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 79999999999999999998876433 4455554555555555554 789999999877753 445566
Q ss_pred -ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCC
Q 028315 83 -RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNT 161 (210)
Q Consensus 83 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 161 (210)
+.+|++++|+|+++..++..+. ..+. ..+.|+++|+||+|+...+.+.. ....+...++++++++||++|
T Consensus 81 ~~~~d~vi~VvDas~~~~~~~l~----~~l~----~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g 151 (256)
T 3iby_A 81 DLEYDCIINVIDACHLERHLYLT----SQLF----ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKN 151 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHHHHH----HHHT----TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGT
T ss_pred hCCCCEEEEEeeCCCchhHHHHH----HHHH----HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCC
Confidence 8899999999999875544322 2222 34789999999999865443332 245577788999999999999
Q ss_pred cCHHHHHHHHHHH
Q 028315 162 EDVKQCFKDLLYK 174 (210)
Q Consensus 162 ~~i~~l~~~i~~~ 174 (210)
.|++++|+++.+.
T Consensus 152 ~gi~el~~~i~~~ 164 (256)
T 3iby_A 152 IGIPALQQSLLHC 164 (256)
T ss_dssp BSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999887
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=1.3e-24 Score=167.00 Aligned_cols=158 Identities=19% Similarity=0.142 Sum_probs=118.2
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc------chhhhh--
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT------LTSSYY-- 82 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~-- 82 (210)
+.++|+++|++|+|||||+++|.+..+.. ..+..+.+.........+. .+.+|||||...+.. .+..++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 35899999999999999999999887633 4455555555555555543 589999999887765 455555
Q ss_pred ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCc
Q 028315 83 RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTE 162 (210)
Q Consensus 83 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 162 (210)
..+|++++|+|+++... ....+..... ....|+++|+||+|+...+.+..+ ...+...++++++++||++|.
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~----~~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~ 151 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLFLTLELFE----MEVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGE 151 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHH----TTCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTB
T ss_pred cCCcEEEEEecCCcchh---hHHHHHHHHh----cCCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCC
Confidence 68999999999998642 2213333332 223899999999998654444332 567778889999999999999
Q ss_pred CHHHHHHHHHHHHHccc
Q 028315 163 DVKQCFKDLLYKILEVP 179 (210)
Q Consensus 163 ~i~~l~~~i~~~~~~~~ 179 (210)
|++++|+++.+.+....
T Consensus 152 gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 152 GVEELKRMIALMAEGKV 168 (271)
T ss_dssp THHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999999876543
No 124
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=1.3e-25 Score=172.66 Aligned_cols=155 Identities=16% Similarity=0.130 Sum_probs=112.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc----------chhhh
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT----------LTSSY 81 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~ 81 (210)
.++|+++|.+|+|||||+|+|++..+.. ..+..+.+.....+...+ ..+.+|||||+..+.. ....+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 5899999999999999999998887533 334444444444444443 4678899999877662 12233
Q ss_pred h--ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEeccc
Q 028315 82 Y--RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 82 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 159 (210)
+ +.+|++++|+|+++..+... |...+.. .+.|+++|+||+|+...+.+.. ....+...++++++++||+
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~----~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~ 151 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLY----LTLQLLE----LGIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVST 151 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHH----HHHHHHH----HTCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCG
T ss_pred HhhcCCCEEEEEecCCChHHHHH----HHHHHHh----cCCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcC
Confidence 2 78999999999998655443 3333322 2689999999999865444322 3456777889999999999
Q ss_pred CCcCHHHHHHHHHHHHHcc
Q 028315 160 NTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 160 ~~~~i~~l~~~i~~~~~~~ 178 (210)
+|.|+++++++|.+.+...
T Consensus 152 ~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 152 RGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp GGHHHHHHHHHHHTCCCCC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999998876544
No 125
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1e-25 Score=167.68 Aligned_cols=149 Identities=21% Similarity=0.271 Sum_probs=104.1
Q ss_pred CCCCCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC----CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhh
Q 028315 6 GNNSYDYSFKILLIGDSGVGKSSILLSLISNSVHD----PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSY 81 (210)
Q Consensus 6 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 81 (210)
.+....+.++|+++|++|+|||||+++|.+..+.. +.++.+.. .....+.+|||||++.+...+..+
T Consensus 5 ~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~ 75 (218)
T 1nrj_B 5 GIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDY 75 (218)
T ss_dssp -----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT---------GGGSSCEEEECCCCGGGTHHHHHH
T ss_pred CCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE---------eeCceEEEEECCCcHHHHHHHHHH
Confidence 33444677999999999999999999999988654 22222221 144678999999999998888888
Q ss_pred hcc----ccEEEEEEeCC-CHhhHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCCccC------HHHHHHHHHH
Q 028315 82 YRG----AHGIILVYDVT-RRETFTNLSSVWAKEVELYS--TNQDCVKILVGNKVDRDSERAVT------REEGMILAQE 148 (210)
Q Consensus 82 ~~~----~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~ 148 (210)
++. +|++++|+|++ ++.++.....++...+.... ...+.|+++|+||+|+...+.+. .++...+...
T Consensus 76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 155 (218)
T 1nrj_B 76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER 155 (218)
T ss_dssp HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 877 89999999999 88888888844444443321 24689999999999998765544 3445566666
Q ss_pred cCCeEEEecccCCcC
Q 028315 149 HKCLFLECSAKNTED 163 (210)
Q Consensus 149 ~~~~~~~~sa~~~~~ 163 (210)
.++.++++||++|.+
T Consensus 156 ~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 156 RKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHC--------
T ss_pred Hhccccccccccccc
Confidence 677899999998875
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=6.2e-25 Score=180.12 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=97.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEE--EEEEECCeEEEEEEEeCCCCcccccch--------hhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKI--KLLTVGGKRLKLTIWDTAGQERFGTLT--------SSY 81 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 81 (210)
..++|+++|.+|+|||||+|+|.+.......+.++++... ..+.+++ +.+.+|||||...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 3589999999999999999999887654444444444443 3444444 579999999987765443 235
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCC
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNT 161 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 161 (210)
++.+|++++|+|++++.+++... .+...+... .+.|+++|+||+|+.+..... ...+......+++++||++|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~-~~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg 382 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELT-EIRELKAAH---PAAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNG 382 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHH-HHHHHHHHC---TTSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTT
T ss_pred cccCCEEEEEEECCCCcchhhhH-HHHHHHHhc---CCCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCC
Confidence 78999999999999988775433 333333322 278999999999997655432 23333332368999999999
Q ss_pred cCHHHHHHHHHHHHH
Q 028315 162 EDVKQCFKDLLYKIL 176 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~ 176 (210)
.|+++++++|.+.+.
T Consensus 383 ~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 383 DGIDTLKQHMGDLVK 397 (476)
T ss_dssp BSHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999887
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=3.2e-25 Score=180.96 Aligned_cols=161 Identities=19% Similarity=0.150 Sum_probs=113.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEE--EEEEEECCeEEEEEEEeCCCC----------cccccch
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFK--IKLLTVGGKRLKLTIWDTAGQ----------ERFGTLT 78 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~ 78 (210)
+..+||+++|.+|||||||+++|++..+....+..+++.. ...+..++. .+.+|||||+ +.|...+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 3569999999999999999999998876433333333333 334444544 5899999997 3333333
Q ss_pred h-hhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHH-HHHH----HcCCe
Q 028315 79 S-SYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGM-ILAQ----EHKCL 152 (210)
Q Consensus 79 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~ 152 (210)
. .+++.+|++++|+|++++.+++... |...+. ..+.|+++|+||+|+.+.+....++.. .+.. ..+++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAH----EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP 324 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHH----HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHH----HcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCC
Confidence 3 4678899999999999988877653 544443 257899999999999765544333322 2222 23678
Q ss_pred EEEecccCCcCHHHHHHHHHHHHHccc
Q 028315 153 FLECSAKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 153 ~~~~sa~~~~~i~~l~~~i~~~~~~~~ 179 (210)
++++||++|.|++++|+.+.+.+....
T Consensus 325 ~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 325 ILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999998876543
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=8.6e-25 Score=179.35 Aligned_cols=162 Identities=19% Similarity=0.147 Sum_probs=116.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEE--EEEEEECCeEEEEEEEeCCC----------Ccccccch
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFK--IKLLTVGGKRLKLTIWDTAG----------QERFGTLT 78 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~~ 78 (210)
...+||+++|.+|+|||||+++|.+.......+..+++.. ...+..++. .+.+||||| ++.|....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4579999999999999999999997764333333333332 233444544 789999999 55555554
Q ss_pred h-hhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHc-----CCe
Q 028315 79 S-SYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEH-----KCL 152 (210)
Q Consensus 79 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~ 152 (210)
. .+++.+|++++|+|++++...+.. .|...+.. .++|+++|+||+|+.+.+....++........ +++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~~--~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP 344 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHHH--HHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCC
Confidence 4 367899999999999986443322 44444442 56899999999999876666656655555443 578
Q ss_pred EEEecccCCcCHHHHHHHHHHHHHccch
Q 028315 153 FLECSAKNTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 153 ~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 180 (210)
++++||++|.|++++|+++.+.+.....
T Consensus 345 ~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 345 ILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998765543
No 129
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.91 E-value=3.7e-24 Score=166.64 Aligned_cols=167 Identities=20% Similarity=0.138 Sum_probs=114.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCc---------ccccchhhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE---------RFGTLTSSY 81 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~ 81 (210)
.+..+|+++|++|+|||||++++++..+....+.++++.......+......+.+|||||+. .+......+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 35668999999999999999999988765433333333222222222234678999999987 234445567
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEecccC
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC-LFLECSAKN 160 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~ 160 (210)
++.+|++++|+|+++ -+ .....+...+. ..+.|+++++||+|+........+....+...+++ .++.+||++
T Consensus 86 l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~----~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WT--PDDEMVLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp CCCEEEEEEEEETTC-CC--HHHHHHHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HhcCCEEEEEEeCCC-CC--HHHHHHHHHHH----hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 889999999999977 22 22212222222 35789999999999865222223344455555665 699999999
Q ss_pred CcCHHHHHHHHHHHHHccchhhhc
Q 028315 161 TEDVKQCFKDLLYKILEVPSLLEQ 184 (210)
Q Consensus 161 ~~~i~~l~~~i~~~~~~~~~~~~~ 184 (210)
|.|++++++++.+.+.+.+..+++
T Consensus 159 g~~v~~l~~~i~~~l~~~~~~~~~ 182 (301)
T 1ega_A 159 GLNVDTIAAIVRKHLPEATHHFPE 182 (301)
T ss_dssp TTTHHHHHHHHHTTCCBCCCSSCT
T ss_pred CCCHHHHHHHHHHhCCcCCCCCCc
Confidence 999999999999887766554443
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=2.3e-25 Score=179.92 Aligned_cols=159 Identities=22% Similarity=0.155 Sum_probs=113.3
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcee--eEEEEEEEEECCeEEEEEEEeCCCCcccccc-------hh
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIG--VDFKIKLLTVGGKRLKLTIWDTAGQERFGTL-------TS 79 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~ 79 (210)
+..+.++|+++|++|+|||||+++|++..+....+..+ .+.....+.+.+. ..+.+|||||++.+... ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 44568999999999999999999999887654333333 3333344444443 27899999999877654 34
Q ss_pred hhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEeccc
Q 028315 80 SYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 159 (210)
.+++.+|++++|+|+...... . .|...+.. .+.|+++|+||+|+...+.. +....+...++++++++||+
T Consensus 109 ~~l~~aD~vllVvD~~~~~~~---~-~~l~~l~~----~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAk 178 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTPYE---D-DVVNLFKE----MEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSAL 178 (423)
T ss_dssp HHHTSCSEEEEECSSSCCHHH---H-HHHHHHHH----TTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSC
T ss_pred HHHhcCCEEEEEEeCCChHHH---H-HHHHHHHh----cCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECC
Confidence 578899999999999433222 2 45555543 37899999999999766544 55666677778999999999
Q ss_pred CCcCHHHHHHHHHHHHHcc
Q 028315 160 NTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 160 ~~~~i~~l~~~i~~~~~~~ 178 (210)
+|.|++++|++|.+.+.+.
T Consensus 179 tg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CTTSTTTHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHhhhhh
Confidence 9999999999999988654
No 131
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.90 E-value=7.8e-24 Score=173.75 Aligned_cols=151 Identities=19% Similarity=0.225 Sum_probs=111.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEEEEEECCeEEEEEEEeCCCCc-cccc--------chhhh
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE-RFGT--------LTSSY 81 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~~--------~~~~~ 81 (210)
.++|+++|.+|+|||||+|+|.+..+.. ..+.++.+.....+.+++ ..+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 4899999999999999999999887544 333333334444455554 568999999987 5532 22456
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCC
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNT 161 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 161 (210)
++.+|++|+|+|++++.+++... .| ..+ .+.|+++|+||+|+.+. +..++...+. ..+.+++++||++|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il-~~l------~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg 389 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-IL-ERI------KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKG 389 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HH-HHH------TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGT
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HH-HHh------cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCC
Confidence 88999999999999987776543 22 222 36799999999999643 3444444332 24468999999999
Q ss_pred cCHHHHHHHHHHHHH
Q 028315 162 EDVKQCFKDLLYKIL 176 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~ 176 (210)
.|+++++++|.+.+.
T Consensus 390 ~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 390 EGLEKLEESIYRETQ 404 (482)
T ss_dssp CCHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999766
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=9.1e-24 Score=166.56 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=115.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCc----ccccchhhhhc---ccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE----RFGTLTSSYYR---GAH 86 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~---~~d 86 (210)
+|+++|.++||||||+++|++..... ..+.+........+.+++ ...+.+|||||.. .+..+...+++ .+|
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 47899999999999999998775422 222111112222233433 2478999999953 34445566655 499
Q ss_pred EEEEEEeCCC---HhhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcC--CeEEEecccC
Q 028315 87 GIILVYDVTR---RETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSERAVTREEGMILAQEHK--CLFLECSAKN 160 (210)
Q Consensus 87 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~ 160 (210)
++|+|+|+++ +.+++.+. .|...+..+.. ..++|+++|+||+|+...+ +....+...+. .+++++||++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred EEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence 9999999998 77788887 67777766532 2578999999999986432 34455666665 6899999999
Q ss_pred CcCHHHHHHHHHHHHHccch
Q 028315 161 TEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 161 ~~~i~~l~~~i~~~~~~~~~ 180 (210)
+.|+++++.+|.+.+.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 314 REGLRELLFEVANQLENTPE 333 (342)
T ss_dssp SSTTHHHHHHHHHHHTSCCC
T ss_pred CcCHHHHHHHHHHHHhhCcc
Confidence 99999999999999876654
No 133
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=1.2e-23 Score=171.77 Aligned_cols=152 Identities=22% Similarity=0.203 Sum_probs=100.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEE--EEEEEEECCeEEEEEEEeCCCCccc---------ccchhhhhc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDF--KIKLLTVGGKRLKLTIWDTAGQERF---------GTLTSSYYR 83 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~~ 83 (210)
+|+++|.+|||||||+|+|.+.......++++.+. ....+...+. .+.+|||||.+.. ...+..+++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 79999999999999999999887654445555543 3344445554 5789999997642 234556789
Q ss_pred cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHH-HHHHHHcCC-eEEEecccCC
Q 028315 84 GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEG-MILAQEHKC-LFLECSAKNT 161 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~sa~~~ 161 (210)
++|++++|+|+.++.+.... .+...+.. .++|+++|+||+|+... . ..+. ..+. .+++ +++++||++|
T Consensus 81 ~ad~il~V~D~~~~~~~~d~--~i~~~l~~----~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDE--SLADFLRK----STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHN 150 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHH--HHHHHHHH----HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTT
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHH----cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCC
Confidence 99999999999886554331 22233322 36899999999998432 1 1222 3333 4566 6999999999
Q ss_pred cCHHHHHHHHHHHHHcc
Q 028315 162 EDVKQCFKDLLYKILEV 178 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~~~ 178 (210)
.|++++++++.+.+.+.
T Consensus 151 ~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 151 INLDTMLETIIKKLEEK 167 (439)
T ss_dssp BSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcccc
Confidence 99999999999988743
No 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.89 E-value=1.4e-22 Score=161.43 Aligned_cols=163 Identities=17% Similarity=0.142 Sum_probs=115.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc---------chhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT---------LTSS 80 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------~~~~ 80 (210)
...++|+++|.+|||||||+++|.+..... ..+.............. ...+.+|||||...+.. ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 356899999999999999999998876422 22222222222222222 45789999999754321 1123
Q ss_pred hhccccEEEEEEeCCCHh--hHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecc
Q 028315 81 YYRGAHGIILVYDVTRRE--TFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSA 158 (210)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa 158 (210)
+...+|++++|+|++++. +++... .|...+.... .+.|+++|+||+|+.....+ ++...++...+++++++||
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~-~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA 317 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQI-HLFEEVHGEF--KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISA 317 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHH-HHHHHHHHHT--TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHH-HHHHHHHHhc--CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeC
Confidence 345699999999999876 566665 5666655443 27899999999999654433 3455566677889999999
Q ss_pred cCCcCHHHHHHHHHHHHHccch
Q 028315 159 KNTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 159 ~~~~~i~~l~~~i~~~~~~~~~ 180 (210)
++|.|+++++++|.+.+.....
T Consensus 318 ~~g~gi~~l~~~i~~~l~~~~~ 339 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRPLAE 339 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999998865433
No 135
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.89 E-value=6.2e-23 Score=172.08 Aligned_cols=159 Identities=21% Similarity=0.235 Sum_probs=112.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCC--CCC------------CCCceeeEEEEEEEEE-----CCeEEEEEEEeCCCC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNS--VHD------------PSPTIGVDFKIKLLTV-----GGKRLKLTIWDTAGQ 71 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~------------~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~ 71 (210)
++..||+++|+.++|||||+++|+... ... .....+.+.......+ ++..+.++||||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 356799999999999999999997632 110 1112334443322222 455789999999999
Q ss_pred cccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC
Q 028315 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC 151 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 151 (210)
..|...+...++.+|++|+|+|++++.+++... .|..... .++|+++++||+|+...+ ..+....+...++.
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~-~~~~~~~-----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~ 153 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLA-NCYTAME-----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGI 153 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHH-HHHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHH-----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCC
Confidence 999999999999999999999999987777666 5655443 478999999999997543 22334455666666
Q ss_pred e---EEEecccCCcCHHHHHHHHHHHHHc
Q 028315 152 L---FLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 152 ~---~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
. ++++||++|.|+++++++|.+.+..
T Consensus 154 ~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 154 DATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp CCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred CcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 3 9999999999999999999988764
No 136
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=8.9e-24 Score=172.44 Aligned_cols=154 Identities=16% Similarity=0.101 Sum_probs=104.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCc--------ccccchhhhhccc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE--------RFGTLTSSYYRGA 85 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~~~ 85 (210)
.+|+++|.+|||||||+++|.+..+....++++.+.......+...+..+.+|||||.+ .+...+..+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999988877777788887776666666566789999999985 4455667788999
Q ss_pred cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEecccCCcCH
Q 028315 86 HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC-LFLECSAKNTEDV 164 (210)
Q Consensus 86 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i 164 (210)
|++++|+|+.++.++... .+...+. ..++|+++|+||+|+...+... ..+. .++. +++++||++|.|+
T Consensus 84 d~il~vvD~~~~~~~~d~--~~~~~l~----~~~~pvilv~NK~D~~~~~~~~----~~~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADE--EVAKILY----RTKKPVVLAVNKLDNTEMRANI----YDFY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp SEEEEEEETTTCSCHHHH--HHHHHHT----TCCSCEEEEEECCCC-----CC----CSSG-GGSSCCCEECBTTTTBTH
T ss_pred CEEEEEEeCCCCCCHHHH--HHHHHHH----HcCCCEEEEEECccCccchhhH----HHHH-HcCCCCeEEEeCcCCCCh
Confidence 999999999987665432 3444443 3678999999999986532111 1122 3454 6999999999999
Q ss_pred HHHHHHHHHHHHcc
Q 028315 165 KQCFKDLLYKILEV 178 (210)
Q Consensus 165 ~~l~~~i~~~~~~~ 178 (210)
+++++++.+.+.+.
T Consensus 153 ~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 153 GDLLDAVAEHFKNI 166 (436)
T ss_dssp HHHHHHHHHTGGGC
T ss_pred HHHHHHHHHhcCcc
Confidence 99999999887643
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=7.8e-23 Score=165.30 Aligned_cols=165 Identities=13% Similarity=0.053 Sum_probs=113.9
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEE-------EE------------ECCeEEEEEEEeCC
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKL-------LT------------VGGKRLKLTIWDTA 69 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------~~------------~~~~~~~~~l~Dt~ 69 (210)
...+.+||+++|++++|||||+++|++............+..... +. .......+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 345679999999999999999999987554332111111111000 00 01123789999999
Q ss_pred CCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC--HHHHHHHHH
Q 028315 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT--REEGMILAQ 147 (210)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~ 147 (210)
|++.|...+...+..+|++++|+|++++.++.... .|...+... ...|+++++||+|+.+..... .++...+..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~-~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTR-EHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHH-HHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHH-HHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876555555 344444432 235899999999996543221 112222222
Q ss_pred Hc---CCeEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 148 EH---KCLFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 148 ~~---~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
.. +++++++||++|.|+++++++|.+.+..
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 22 5689999999999999999999887653
No 138
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.89 E-value=1.6e-22 Score=169.42 Aligned_cols=159 Identities=21% Similarity=0.242 Sum_probs=114.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCC--CCC------CC------CceeeEEE----EEEEEE-CCeEEEEEEEeCCCC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNS--VHD------PS------PTIGVDFK----IKLLTV-GGKRLKLTIWDTAGQ 71 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~------~~------~~~~~~~~----~~~~~~-~~~~~~~~l~Dt~G~ 71 (210)
++..||+++|+.++|||||+++|+... ... .. ...+.+.. ...+.. ++..+.++||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 567899999999999999999997631 111 00 11222221 111111 455789999999999
Q ss_pred cccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC
Q 028315 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC 151 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 151 (210)
..|...+...++.+|++++|+|++++.+++... .|..... .+.|+++++||+|+...+ ..+...++...++.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~-~~~~a~~-----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVA-NFWKAVE-----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGL 155 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHH-HHHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH-----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCC
Confidence 999988999999999999999999987777766 5655443 578999999999996543 12234455566666
Q ss_pred ---eEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 152 ---LFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 152 ---~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
+++++||++|.|++++|++|.+.+..
T Consensus 156 ~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 156 DPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp CGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 39999999999999999999988764
No 139
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=1.1e-22 Score=155.42 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=105.3
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCc-eeeEEEEEEEEECCeEEEEEEEeCCCCcccccch-------
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD--PSPT-IGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLT------- 78 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------- 78 (210)
+....++|+++|++|||||||+++|++..... ..++ .............+ ..+.+|||||+..+....
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 34567999999999999999999999877333 2232 22223333333443 568999999976654322
Q ss_pred ----hhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhc-cCCCCcEEEEEe-CCCCCCCCccCH-------HHHHHH
Q 028315 79 ----SSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYS-TNQDCVKILVGN-KVDRDSERAVTR-------EEGMIL 145 (210)
Q Consensus 79 ----~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~~ 145 (210)
..+++.+|++++|+|+++... ....+...+.... .....|.++++| |+|+... .+.. ++...+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~---~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTS---QDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCH---HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCH---HHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHH
Confidence 225688999999999986221 1112223333221 112456676666 9999743 2222 223345
Q ss_pred HHHcCCe---E--EEecccCCcCHHHHHHHHHHHHHccc
Q 028315 146 AQEHKCL---F--LECSAKNTEDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 146 ~~~~~~~---~--~~~sa~~~~~i~~l~~~i~~~~~~~~ 179 (210)
....+.. + +++||++|.|++++|++|.+.+....
T Consensus 172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 5555432 2 78999999999999999999988765
No 140
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=152.66 Aligned_cols=164 Identities=18% Similarity=0.142 Sum_probs=104.4
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCC--ceeeEEEEEEEEECCeEEEEEEEeCCCCcc-----------cc
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSP--TIGVDFKIKLLTVGGKRLKLTIWDTAGQER-----------FG 75 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~ 75 (210)
....+||+++|.+|+|||||+++|++..+.. ..+ +.............+ ..+.+|||||... +.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 3568999999999999999999999887754 333 223333333344444 4789999999432 23
Q ss_pred cchhhhhccccEEEEEEeCCCHhh--HHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC------HHHHHHHHH
Q 028315 76 TLTSSYYRGAHGIILVYDVTRRET--FTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT------REEGMILAQ 147 (210)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~ 147 (210)
..+...++.+|++|+|+|+++... ...+. .+...+.. ....|+++|+||+|+.....+. .+..+.+..
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~-~~~~~~~~---~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATE-KILKMFGE---RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHH-HHHHHHHH---HHGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHH-HHHHHhhh---hccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 333444567899999999875433 12222 22222222 1346999999999986554443 235667777
Q ss_pred HcCCeEEEecccCC-----cCHHHHHHHHHHHHHccc
Q 028315 148 EHKCLFLECSAKNT-----EDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 148 ~~~~~~~~~sa~~~-----~~i~~l~~~i~~~~~~~~ 179 (210)
.++..++.+++..+ .++.++|..+.+.+.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 88888888877644 689999998888776543
No 141
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.88 E-value=2.4e-22 Score=152.32 Aligned_cols=168 Identities=15% Similarity=0.093 Sum_probs=106.5
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCC--------cccccchhh
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ--------ERFGTLTSS 80 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~ 80 (210)
....+||+++|.+|+|||||+|++++..... ..+..+.+...........+..+.+|||||. +.+......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 3568999999999999999999999888655 2233233333222222223457899999996 333333333
Q ss_pred hh----ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCCcc------CHHHHHHHHHH
Q 028315 81 YY----RGAHGIILVYDVTRRETFTNLSSVWAKEVELYST--NQDCVKILVGNKVDRDSERAV------TREEGMILAQE 148 (210)
Q Consensus 81 ~~----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~ 148 (210)
++ +.+|++|+|+|+++... ....+...+..... ..+.|+++++||.|+.+.... ..+..+.+...
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~---~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTA---QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCH---HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCCCCCH---HHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHH
Confidence 33 89999999999985321 11122333332211 136799999999999653211 11335667777
Q ss_pred cCCeEEEecccC-----CcCHHHHHHHHHHHHHccch
Q 028315 149 HKCLFLECSAKN-----TEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 149 ~~~~~~~~sa~~-----~~~i~~l~~~i~~~~~~~~~ 180 (210)
++..++.+++.. +.++++|++.|.+.+.++..
T Consensus 175 ~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~ 211 (247)
T 3lxw_A 175 CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKG 211 (247)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 887777776654 58999999999998886443
No 142
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=9.6e-22 Score=160.30 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=105.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC------------------------------CCCceeeEEEEEEEEECCeE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD------------------------------PSPTIGVDFKIKLLTVGGKR 60 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 60 (210)
...+||+++|++++|||||+++|+...... .....+.+.......+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 467999999999999999999996542111 11123445555555555556
Q ss_pred EEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhh---HHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCC-
Q 028315 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRET---FTNLSSVWAKEVELYSTNQDCV-KILVGNKVDRDSER- 135 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~- 135 (210)
..+.||||||++.|...+...++.+|++++|+|++++.. |+... .....+.... ..+.| +++++||+|+....
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~-qt~e~l~~~~-~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGG-QTREHAMLAK-TAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCc-hHHHHHHHHH-HcCCCeEEEEeecCCCcccch
Confidence 789999999999999999889999999999999998632 11000 1111111111 23566 89999999985321
Q ss_pred -----ccCHHHHHHHHHHcC------CeEEEecccCCcCHHHHHH
Q 028315 136 -----AVTREEGMILAQEHK------CLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 136 -----~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~l~~ 169 (210)
....++...+....+ ++++++||++|.|+.++++
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 111122333443433 4799999999999999665
No 143
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.88 E-value=1.3e-22 Score=160.51 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=94.9
Q ss_pred EEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCC----------HhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028315 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTR----------RETFTNLSSVWAKEVELYSTNQDCVKILVGNKV 129 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (210)
.+.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...+|...+.. ....+.|+++++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~-~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN-KWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC-GGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC-ccccCCcEEEEEECc
Confidence 5789999999999999999999999999999999999 45688877444444332 223679999999999
Q ss_pred CCCCCC---------------ccCHHHHHHHHH-----------HcCCeEEEecccCCcCHHHHHHHHHHHHHcc
Q 028315 130 DRDSER---------------AVTREEGMILAQ-----------EHKCLFLECSAKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 130 Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 178 (210)
|+...+ .++.+++..++. ..++.+++|||+++.||+++|+++.+.+...
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 984322 356677777765 3466799999999999999999999988743
No 144
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=2.9e-22 Score=163.66 Aligned_cols=160 Identities=19% Similarity=0.203 Sum_probs=108.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEE--EEEEEEECCeEEEEEEEeCCCCcccccc-----------
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDF--KIKLLTVGGKRLKLTIWDTAGQERFGTL----------- 77 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 77 (210)
+..++|+++|++|||||||++++.+.......+.++++. ....+.+++. .+.+|||||...+...
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 356999999999999999999999887644334444333 3334455655 5789999997433211
Q ss_pred -hhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHH-HHHH----HcCC
Q 028315 78 -TSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGM-ILAQ----EHKC 151 (210)
Q Consensus 78 -~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~ 151 (210)
...+++.+|++++|+|++++.+.+.. .+...+. ..+.|+++|+||+|+...+....++.. .+.. ..++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~----~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLME----RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYS 329 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHH----HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTS
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHH----HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCC
Confidence 12357789999999999987665542 2333332 257899999999999765443333332 2222 2357
Q ss_pred eEEEecccCCcCHHHHHHHHHHHHHcc
Q 028315 152 LFLECSAKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 152 ~~~~~sa~~~~~i~~l~~~i~~~~~~~ 178 (210)
+++++||++|.|++++|+.+.+.+...
T Consensus 330 ~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 330 PLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999877554
No 145
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=1.2e-21 Score=158.55 Aligned_cols=160 Identities=18% Similarity=0.136 Sum_probs=104.3
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC----CCC--ceeeEEEEEEEEE-------------C--C----eEEEEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD----PSP--TIGVDFKIKLLTV-------------G--G----KRLKLT 64 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~----~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 64 (210)
+...+||+++|+.++|||||+++|.+..... ..+ |....+....... + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3467999999999999999999998543221 222 3333333222211 1 1 137899
Q ss_pred EEeCCCCcccccchhhhhccccEEEEEEeCCCH----hhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc--C
Q 028315 65 IWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR----ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV--T 138 (210)
Q Consensus 65 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~ 138 (210)
||||||++.|...+...+..+|++++|+|++++ ++++.+. .+.. ....|+++++||+|+.+.... .
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-----~~~~---l~~~~iivv~NK~Dl~~~~~~~~~ 156 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM-----ALEI---LGIDKIIIVQNKIDLVDEKQAEEN 156 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH-----HHHH---TTCCCEEEEEECTTSSCTTTTTTH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH-----HHHH---cCCCeEEEEEEccCCCCHHHHHHH
Confidence 999999999887777777889999999999954 3433332 1221 123589999999999765432 2
Q ss_pred HHHHHHHHHH---cCCeEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 139 REEGMILAQE---HKCLFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 139 ~~~~~~~~~~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
.++...+... .+++++++||++|.|+++++++|.+.+..
T Consensus 157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 3444555543 35789999999999999999999886653
No 146
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=8.7e-23 Score=168.49 Aligned_cols=152 Identities=18% Similarity=0.099 Sum_probs=99.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC------------------------------CCCceeeEEEEEEEEECCeEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD------------------------------PSPTIGVDFKIKLLTVGGKRL 61 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (210)
..+||+++|++++|||||+++|++..... .....+.+.......++...+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 46999999999999999999997651100 112224444444444555567
Q ss_pred EEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHH-----HHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCc
Q 028315 62 KLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL-----SSVWAKEVELYSTNQDCVKILVGNKVDRDSERA 136 (210)
Q Consensus 62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 136 (210)
.+.||||||++.|...+...++.+|++|+|+|++++..+..+ .......+.. ....|++||+||+|+.+.+.
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~---~~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH---TTCCCEEEEEECGGGGTTCH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH---cCCCcEEEEEECcCcccchH
Confidence 899999999999999999999999999999999987543211 1011111111 23357999999999975333
Q ss_pred cCHHHH----HHHHHHc-----CCeEEEecccCCcCHHH
Q 028315 137 VTREEG----MILAQEH-----KCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 137 ~~~~~~----~~~~~~~-----~~~~~~~sa~~~~~i~~ 166 (210)
...++. ..+.... +++++++||++|.|+++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 322222 2222222 45799999999999985
No 147
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=3.8e-23 Score=169.00 Aligned_cols=154 Identities=21% Similarity=0.192 Sum_probs=102.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchh--------hh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTS--------SY 81 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--------~~ 81 (210)
..++|+++|.+|+|||||+|+|.+..+.. ..+.++.+.....+.+++ ..+.+|||||...+...+. .+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 46899999999999999999999876543 333333333333445555 4679999999766543332 25
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCC
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNT 161 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 161 (210)
++.+|++++|+|++++.+.... .|...+. ..|+++|+||+|+.+...+.. ...+. .+.+++++||++|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~~--~i~~~l~------~~piivV~NK~Dl~~~~~~~~--~~~~~--~~~~~i~iSAktg 368 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGDQ--EIYEQVK------HRPLILVMNKIDLVEKQLITS--LEYPE--NITQIVHTAAAQK 368 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHHH--HHHHHHT------TSCEEEEEECTTSSCGGGSTT--CCCCT--TCCCEEEEBTTTT
T ss_pred hhcCCEEEEEeccCCCCCHHHH--HHHHhcc------CCcEEEEEECCCCCcchhhHH--HHHhc--cCCcEEEEECCCC
Confidence 7889999999999987665542 3444432 369999999999976544321 11111 3567999999999
Q ss_pred cCHHHHHHHHHHHHHccc
Q 028315 162 EDVKQCFKDLLYKILEVP 179 (210)
Q Consensus 162 ~~i~~l~~~i~~~~~~~~ 179 (210)
.|+++++++|.+.+....
T Consensus 369 ~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 369 QGIDSLETAILEIVQTGK 386 (462)
T ss_dssp BSHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHhccC
Confidence 999999999999886543
No 148
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.87 E-value=3.8e-22 Score=164.30 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=108.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCC----CCC--CCCceeeEEE--EEEEEECCeEEEEEEEeCCCCcccccchhhhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNS----VHD--PSPTIGVDFK--IKLLTVGGKRLKLTIWDTAGQERFGTLTSSYY 82 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~----~~~--~~~~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 82 (210)
.+.++|+++|++++|||||+++|.+.. ... .....+.+.. .....++ +..+.+|||||++.|...+...+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHHHHHH
Confidence 468999999999999999999998766 211 1111122221 1122333 36899999999999988888899
Q ss_pred ccccEEEEEEeCCC---HhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc--CHHHHHHHHHHc----CCeE
Q 028315 83 RGAHGIILVYDVTR---RETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV--TREEGMILAQEH----KCLF 153 (210)
Q Consensus 83 ~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~ 153 (210)
..+|++++|+|+++ +++.+.+. .+. ..++|.++++||+|+.+.... ..++...+.... +.++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~-----~~~----~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHML-----ILD----HFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHH-----HHH----HTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred hhCCEEEEEEecCCCccHHHHHHHH-----HHH----HcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 99999999999998 44433222 222 246788999999999753221 122333444443 5689
Q ss_pred EEecccCCcCHHHHHHHHHHHHH
Q 028315 154 LECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 154 ~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
+++||++|.|+++++++|.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999999875
No 149
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.86 E-value=1.7e-21 Score=157.78 Aligned_cols=160 Identities=17% Similarity=0.139 Sum_probs=109.3
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC----CCC--ceeeEEEEEEEEE-------------C--C----eEEEE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD----PSP--TIGVDFKIKLLTV-------------G--G----KRLKL 63 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~----~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 63 (210)
.+...+||+++|+.++|||||+++|.+..... ..+ |....+....+.. . + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 34678999999999999999999998543221 112 3333333222211 0 1 13789
Q ss_pred EEEeCCCCcccccchhhhhccccEEEEEEeCCCH----hhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc--
Q 028315 64 TIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRR----ETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV-- 137 (210)
Q Consensus 64 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-- 137 (210)
.||||||++.|...+...+..+|++++|+|++++ ++.+.+. .+ ... ...|+++++||+|+.+....
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~----~~~---~~~~iivviNK~Dl~~~~~~~~ 157 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-AL----QII---GQKNIIIAQNKIELVDKEKALE 157 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-HH----HHH---TCCCEEEEEECGGGSCHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-HH----HHc---CCCcEEEEEECccCCCHHHHHH
Confidence 9999999999887777778889999999999964 3333332 12 211 23589999999998754321
Q ss_pred CHHHHHHHHHH---cCCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 138 TREEGMILAQE---HKCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 138 ~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
..++...+... .+++++++||++|.|+++++++|.+.+.
T Consensus 158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 12233344433 3568999999999999999999988665
No 150
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.86 E-value=2.4e-22 Score=166.73 Aligned_cols=117 Identities=16% Similarity=0.193 Sum_probs=84.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCC------------------CC---CCCceeeEEEEEEEEECCeEEEEEEEeCC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSV------------------HD---PSPTIGVDFKIKLLTVGGKRLKLTIWDTA 69 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 69 (210)
.+..+|+|+|++|+|||||+++|+.... .. .....+.+.......+...++.++|||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 4678999999999999999999962110 00 00011222222222333335789999999
Q ss_pred CCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
|+..|...+..+++.+|++|+|+|++++.+.+... .|.... ..++|+++|+||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~-----~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCR-----LRHTPIMTFINKMDRDT 148 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHH-----TTTCCEEEEEECTTSCC
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH-----HcCCCEEEEEeCCCCcc
Confidence 99999999999999999999999999987766655 554332 35789999999999854
No 151
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=4.4e-22 Score=153.12 Aligned_cols=160 Identities=22% Similarity=0.312 Sum_probs=91.9
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC--C-------CCceeeEEEEEEEEECCeEEEEEEEeCCCCccc------
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD--P-------SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF------ 74 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------ 74 (210)
+...+||+++|.+|+|||||+|++++..... + .++.+.+.....+..++..+.+.+|||||....
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 3567999999999999999999987765433 2 344554554444444455579999999997322
Q ss_pred -ccch-------hhhhc-------------cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 75 -GTLT-------SSYYR-------------GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 75 -~~~~-------~~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
..+. ..++. .+|+++++++.+... +......+...+. .++|+++|+||+|+..
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~-----~~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLH-----EKVNIIPLIAKADTLT 158 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHT-----TTSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHh-----ccCCEEEEEeccCCCC
Confidence 2222 33333 278999999776522 1112213444443 2789999999999864
Q ss_pred CCccCH--HHHHHHHHHcCCeEEEecccCCcCHHHHHHHHHHHH
Q 028315 134 ERAVTR--EEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175 (210)
Q Consensus 134 ~~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~ 175 (210)
..+... +.........+++++.+||+++.|+++++.+|.+.+
T Consensus 159 ~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 159 PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 333221 223344456788999999999999999999887754
No 152
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=8.4e-24 Score=174.99 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=111.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
++..+|+++|++++|||||+++|.+..+.. ..++++.++....+... .+..+.||||||++.|..++..+++.+|+++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 345789999999999999999998765433 33333322222222221 2346899999999999999999999999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC-HHHHHHH---HHHc--CCeEEEecccCCcC
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT-REEGMIL---AQEH--KCLFLECSAKNTED 163 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~sa~~~~~ 163 (210)
+|+|++++...+... .|.... ..++|+++++||+|+...+... ..+...+ ...+ .++++++||++|.|
T Consensus 81 LVVDa~dg~~~qt~e-~l~~~~-----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~G 154 (537)
T 3izy_P 81 LVVAADDGVMKQTVE-SIQHAK-----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGEN 154 (537)
T ss_dssp EECBSSSCCCHHHHH-HHHHHH-----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCS
T ss_pred EEEECCCCccHHHHH-HHHHHH-----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCC
Confidence 999999876555443 332222 3578999999999986432211 1112111 1112 24799999999999
Q ss_pred HHHHHHHHHHHHH
Q 028315 164 VKQCFKDLLYKIL 176 (210)
Q Consensus 164 i~~l~~~i~~~~~ 176 (210)
++++++++...+.
T Consensus 155 I~eLle~I~~l~~ 167 (537)
T 3izy_P 155 MMALAEATIALAE 167 (537)
T ss_dssp SHHHHHHHHHHHT
T ss_pred chhHHHHHHHhhh
Confidence 9999999988764
No 153
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=5.7e-22 Score=154.78 Aligned_cols=119 Identities=14% Similarity=0.159 Sum_probs=94.4
Q ss_pred eEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCC----------CHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028315 59 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVT----------RRETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128 (210)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (210)
..+.+++|||+|++.++..|..++++++++|+|+|++ +..++.+....|...+.... ..+.|+++++||
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~-~~~~~iiL~~NK 243 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW-FQNSSVILFLNK 243 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG-GTTCEEEEEEEC
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc-cCCceEEEEEEC
Confidence 3578999999999999999999999999999999665 66778777744544443322 467999999999
Q ss_pred CCCCCCC----------------ccCHHHHHHHH----------HHcCCeEEEecccCCcCHHHHHHHHHHHHHcc
Q 028315 129 VDRDSER----------------AVTREEGMILA----------QEHKCLFLECSAKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 129 ~Dl~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 178 (210)
+|+...+ ..+.+++..+. ...++.+++|||+++.||+++|..+.+.+.+.
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 9985432 35667777663 23456789999999999999999999998854
No 154
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.86 E-value=2.3e-22 Score=160.10 Aligned_cols=163 Identities=20% Similarity=0.305 Sum_probs=93.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC--C--------CCceeeEEEEEEEEECCeEEEEEEEeCCCC-------cc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD--P--------SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQ-------ER 73 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~ 73 (210)
...++|+++|++|+|||||+++|++..... + .++.+...........+..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 357999999999999999999986654322 1 134444433333344556678999999998 66
Q ss_pred cccchh-------hhhccc-------------cEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 74 FGTLTS-------SYYRGA-------------HGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 74 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
+..++. .+++.+ |+++++++.. ..++..+...|...+ ..++|+++|+||+|+..
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT 188 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCC
Confidence 766665 555543 3455555532 233444442343333 25789999999999976
Q ss_pred CCccCH--HHHHHHHHHcCCeEEEecccCCcCHHHHHHHHHHHHHccch
Q 028315 134 ERAVTR--EEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 134 ~~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 180 (210)
.+++.. +++..++..++++++++||+++.+ ++.|.++.+.+.+..+
T Consensus 189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 555443 455666667789999999999999 8889999888876544
No 155
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=4.1e-21 Score=156.61 Aligned_cols=154 Identities=18% Similarity=0.139 Sum_probs=104.0
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC---C----------CCc-------------------eeeEEEEEEEEEC
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD---P----------SPT-------------------IGVDFKIKLLTVG 57 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---~----------~~~-------------------~~~~~~~~~~~~~ 57 (210)
....+||+++|++++|||||+++|++..... . ..+ .+.+.......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3467999999999999999999998654111 0 011 1122222222333
Q ss_pred CeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCc-
Q 028315 58 GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERA- 136 (210)
Q Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~- 136 (210)
.....+.+|||||++.|...+...+..+|++|+|+|++++...+... +...+.. ..-.|+++|+||+|+.+...
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~--~l~~~~~---~~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR--HSYIASL---LGIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH--HHHHHHH---TTCCEEEEEEECTTTTTSCHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHH---cCCCeEEEEEEcCcCCcccHH
Confidence 44568999999999999888888899999999999999865333222 3333322 12236999999999975321
Q ss_pred -c--CHHHHHHHHHHcC-----CeEEEecccCCcCHHHHH
Q 028315 137 -V--TREEGMILAQEHK-----CLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 137 -~--~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~l~ 168 (210)
+ ..++...+...++ ++++++||++|.|+++++
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 1 1234455556666 679999999999998853
No 156
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=1.9e-22 Score=165.47 Aligned_cols=155 Identities=16% Similarity=0.086 Sum_probs=104.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC--------Ccccccchhhhhc
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAG--------QERFGTLTSSYYR 83 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~~~~~ 83 (210)
...+|+++|.+|||||||+|+|.+..+....++++.+.......+...+..+.+||||| ++.+...+..+++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 45789999999999999999999988777777888888877777777777899999999 5555667777889
Q ss_pred cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEecccCCc
Q 028315 84 GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKC-LFLECSAKNTE 162 (210)
Q Consensus 84 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 162 (210)
.+|++|+|+|..+..+... ..+...+. ..++|+++|+||+|+..... ....+ ...+. .++.+||++|.
T Consensus 102 ~ad~il~VvD~~~~~~~~d--~~l~~~l~----~~~~pvilV~NK~D~~~~~~----~~~e~-~~lg~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTAAD--EEVAKILY----RTKKPVVLAVNKLDNTEMRA----NIYDF-YSLGFGEPYPISGTHGL 170 (456)
T ss_dssp HCSEEEEEEESSSCSCHHH--HHHHHHHT----TCCSCEEEEEECC-------------CCS-GGGSSSSEEECCTTTCT
T ss_pred hCCEEEEEEeCCCCCChHH--HHHHHHHH----HcCCCEEEEEECccchhhhh----hHHHH-HHcCCCceEEeeccccc
Confidence 9999999999887543332 23344443 36889999999999864321 11111 12233 47899999999
Q ss_pred CHHHHHHHHHHHHHc
Q 028315 163 DVKQCFKDLLYKILE 177 (210)
Q Consensus 163 ~i~~l~~~i~~~~~~ 177 (210)
|+.++++++.+.+..
T Consensus 171 gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 171 GLGDLLDAVAEHFKN 185 (456)
T ss_dssp THHHHHHHHHTTGGG
T ss_pred chHHHHHHHHhhccc
Confidence 999999999877653
No 157
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.86 E-value=7.9e-22 Score=159.10 Aligned_cols=159 Identities=13% Similarity=0.045 Sum_probs=111.1
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCC-------CCCC--------CCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNS-------VHDP--------SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT 76 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~-------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 76 (210)
..+||+++|++++|||||+++|.+.. +... ....+.+.......+......+.+|||||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 36899999999999999999998641 1110 01223344433444544557899999999999988
Q ss_pred chhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCCcc---CHHHHHHHHHHcC--
Q 028315 77 LTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCV-KILVGNKVDRDSERAV---TREEGMILAQEHK-- 150 (210)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 150 (210)
.+...++.+|++|+|+|+++....+... .| ..+. ..++| +++++||+|+...... ..++...+...++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l-~~~~----~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTRE-HL-LLAR----QIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHH-HH-HHHH----HTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHH-HH-HHHH----HcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 8888899999999999999865443333 33 2222 24678 6899999998642211 1234455555555
Q ss_pred ---CeEEEecccCCcC----------HHHHHHHHHHHHH
Q 028315 151 ---CLFLECSAKNTED----------VKQCFKDLLYKIL 176 (210)
Q Consensus 151 ---~~~~~~sa~~~~~----------i~~l~~~i~~~~~ 176 (210)
++++++||++|.| +.++++.|.+.+.
T Consensus 156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 5899999999764 8888888877664
No 158
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.86 E-value=1.2e-20 Score=150.16 Aligned_cols=163 Identities=18% Similarity=0.106 Sum_probs=106.2
Q ss_pred EEE-EEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc---------cccchhhh
Q 028315 13 SFK-ILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER---------FGTLTSSY 81 (210)
Q Consensus 13 ~~~-i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~ 81 (210)
.++ |+++|.+|+|||||+++|.+..+.. ..+....+.....+.+++ ..+.+|||+|.-. |...+ ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 344 9999999999999999998876522 222222234445556666 4678999999622 22222 24
Q ss_pred hccccEEEEEEeCCCHh--hHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC-HHHHHHHHHHc---CCeEEE
Q 028315 82 YRGAHGIILVYDVTRRE--TFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT-REEGMILAQEH---KCLFLE 155 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~---~~~~~~ 155 (210)
+..+|++++|+|++++. ..+... .|...+.... ..+.|+++|+||+|+....... .+.+..+...+ +.++++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQ-SSFEILREIG-VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHT-CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhC-cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 67899999999999876 444444 5555555443 3578999999999986533100 11222233444 336899
Q ss_pred ecccCCcCHHHHHHHHHHHHHccch
Q 028315 156 CSAKNTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 156 ~sa~~~~~i~~l~~~i~~~~~~~~~ 180 (210)
+||+++.|+++++++|.+.+.....
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred EECCCCcCHHHHHHHHHHHhcccCC
Confidence 9999999999999999987765443
No 159
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=7.4e-22 Score=159.69 Aligned_cols=160 Identities=14% Similarity=0.066 Sum_probs=111.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhC--------CCCCC--------CCceeeEEEEEEEEECCeEEEEEEEeCCCCccc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISN--------SVHDP--------SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF 74 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (210)
...+||+++|++++|||||+++|.+. .+..+ ..+.+.+.......+......+.+|||||++.|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45799999999999999999999873 11111 012333444344445445578899999999999
Q ss_pred ccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCCcc---CHHHHHHHHHHcC
Q 028315 75 GTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCV-KILVGNKVDRDSERAV---TREEGMILAQEHK 150 (210)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 150 (210)
...+...++.+|++|+|+|++++...+.. .|...+.. .+.| +++++||+|+...... ..++...+...++
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~--~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHHH--HHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHHH--HHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 88888889999999999999987544332 23333332 4677 8899999998642211 1223445555554
Q ss_pred -----CeEEEecccCCcC------------------HHHHHHHHHHHHH
Q 028315 151 -----CLFLECSAKNTED------------------VKQCFKDLLYKIL 176 (210)
Q Consensus 151 -----~~~~~~sa~~~~~------------------i~~l~~~i~~~~~ 176 (210)
++++++||++|.| +.++++.|.+.+.
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 6799999999987 6777777666554
No 160
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.85 E-value=5.2e-21 Score=151.32 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=89.2
Q ss_pred eEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCC----------CHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028315 59 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVT----------RRETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128 (210)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (210)
..+.+++|||+|++.++..|..++++++++|+|||++ +..++++...+|...... ....+.|+++|+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~-~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC-GGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc-cccCCCeEEEEEEC
Confidence 5789999999999999999999999999999999998 778898888444444432 22367899999999
Q ss_pred CCCCCCCc--c-------------------CHHHHHHHHHH----------------cCCeEEEecccCCcCHHHHHHHH
Q 028315 129 VDRDSERA--V-------------------TREEGMILAQE----------------HKCLFLECSAKNTEDVKQCFKDL 171 (210)
Q Consensus 129 ~Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~sa~~~~~i~~l~~~i 171 (210)
+|+..++. + +.+++..++.. ..+.+++|||+++.||+++|+++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 99843211 1 13455555322 12346999999999999999999
Q ss_pred HHHHHc
Q 028315 172 LYKILE 177 (210)
Q Consensus 172 ~~~~~~ 177 (210)
.+.+.+
T Consensus 340 ~~~I~~ 345 (354)
T 2xtz_A 340 DETLRR 345 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 161
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2e-21 Score=141.59 Aligned_cols=123 Identities=19% Similarity=0.226 Sum_probs=88.9
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhcc----c
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRG----A 85 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~----~ 85 (210)
..+.++|+++|++|||||||+++|.+..+.........+. ..+.....+.+|||||++.+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-----eeeecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 3567899999999999999999999887644211111111 112245678999999999998888888776 8
Q ss_pred cEEEEEEeCC-CHhhHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCCcc
Q 028315 86 HGIILVYDVT-RRETFTNLSSVWAKEVELYS--TNQDCVKILVGNKVDRDSERAV 137 (210)
Q Consensus 86 d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~ 137 (210)
|++++|+|++ +..++..+..++...+.... ...+.|+++|+||+|+.+.+.+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 9999999999 89999888844444443322 2357999999999999765543
No 162
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.85 E-value=1.8e-21 Score=155.24 Aligned_cols=146 Identities=10% Similarity=0.044 Sum_probs=104.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDV 94 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (210)
+|+++|++++|||||+++|+ ..+.+.......+......+.+|||||++.|...+...++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 99999999999999999997 22333333333455555679999999999998888888899999999999
Q ss_pred CCHhhHHHHHHHHHHHHhhhccCCCCcE-EEEEe-CCCCCCCCccCH--HHHHHHHHHc---CCeEEE--ecccC---Cc
Q 028315 95 TRRETFTNLSSVWAKEVELYSTNQDCVK-ILVGN-KVDRDSERAVTR--EEGMILAQEH---KCLFLE--CSAKN---TE 162 (210)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~--~sa~~---~~ 162 (210)
.... +.... .+...+.. .+.|. ++++| |+|+ +.+.+.. ++...+.... .+++++ +||++ +.
T Consensus 93 ~~g~-~~qt~-e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 93 PQGL-DAHTG-ECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp TTCC-CHHHH-HHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred CCCC-cHHHH-HHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 5432 33333 23333332 35676 88899 9998 4332221 3344444433 368999 99999 99
Q ss_pred CHHHHHHHHHHHHHc
Q 028315 163 DVKQCFKDLLYKILE 177 (210)
Q Consensus 163 ~i~~l~~~i~~~~~~ 177 (210)
|++++++.|.+.+..
T Consensus 166 gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 166 GVDELKARINEVAEK 180 (370)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhccc
Confidence 999999999988754
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.85 E-value=8.6e-22 Score=160.58 Aligned_cols=156 Identities=15% Similarity=0.185 Sum_probs=102.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhC--CCCCC----------------------------CCceeeEEEEEEEEECCeEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISN--SVHDP----------------------------SPTIGVDFKIKLLTVGGKRL 61 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~ 61 (210)
..+||+++|++++|||||+++|+.. .+... ....+.+.......+.....
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 5699999999999999999999864 22210 01123333333334444557
Q ss_pred EEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhh---ccCCC-CcEEEEEeCCCCCCCC--
Q 028315 62 KLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELY---STNQD-CVKILVGNKVDRDSER-- 135 (210)
Q Consensus 62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~-~p~ivv~nK~Dl~~~~-- 135 (210)
.+.+|||||++.|...+...++.+|++|+|+|+++ .+|+... .|....... ....+ .|+++++||+|+.+..
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~-~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGM-SVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHH-STTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Ccccccc-ccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 89999999999999888899999999999999998 5566433 111111111 00123 4689999999997521
Q ss_pred ----ccCHHHHHHHHHHcC-----CeEEEecccCCcCHHHHHH
Q 028315 136 ----AVTREEGMILAQEHK-----CLFLECSAKNTEDVKQCFK 169 (210)
Q Consensus 136 ----~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~l~~ 169 (210)
....++...+....+ ++++++||++|.|+.++++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 111234555555555 6799999999999986543
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.85 E-value=1.1e-20 Score=158.63 Aligned_cols=157 Identities=22% Similarity=0.164 Sum_probs=106.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCC-----CceeeEEEEEEE------------EECCeEEEEEEEeCCCCcc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPS-----PTIGVDFKIKLL------------TVGGKRLKLTIWDTAGQER 73 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~~~~~~l~Dt~G~~~ 73 (210)
.+..+|+++|++++|||||+++|++..+.... ++.+..+..... .++.....++||||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 35679999999999999999999876554322 233322221000 0001112589999999999
Q ss_pred cccchhhhhccccEEEEEEeCCC---HhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC------------
Q 028315 74 FGTLTSSYYRGAHGIILVYDVTR---RETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT------------ 138 (210)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------------ 138 (210)
|..++...++.+|++|+|+|+++ +++++.+. . +. ..++|+++++||+|+.+.....
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~-l~----~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~ 153 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----I-LR----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQ 153 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----H-HH----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----H-HH----HcCCeEEEEecccccccccccccCCchHHHHHHh
Confidence 99999888999999999999999 55555333 1 22 2578999999999986421100
Q ss_pred -HH----------HH-HHHHHH--------------cCCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 139 -RE----------EG-MILAQE--------------HKCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 139 -~~----------~~-~~~~~~--------------~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
.. +. ..+... ..++++.+||++|.|+++++++|...+.
T Consensus 154 ~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 154 DIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 00 00 111110 1237999999999999999999998775
No 165
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.84 E-value=4.7e-21 Score=152.11 Aligned_cols=118 Identities=17% Similarity=0.175 Sum_probs=87.4
Q ss_pred EEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCC----------HhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028315 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTR----------RETFTNLSSVWAKEVELYSTNQDCVKILVGNKV 129 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (210)
.+.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+....|...+.... ..+.|+++++||+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~-~~~~piILv~NK~ 278 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV-FSNVSIILFLNKT 278 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG-GTTSEEEEEEECH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh-hCCCCEEEEEECh
Confidence 4789999999999999999999999999999999999 6788888855555544322 3678999999999
Q ss_pred CCCCCC----------------ccCHHHHHHHH--------H---HcCCeEEEecccCCcCHHHHHHHHHHHHHcc
Q 028315 130 DRDSER----------------AVTREEGMILA--------Q---EHKCLFLECSAKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 130 Dl~~~~----------------~~~~~~~~~~~--------~---~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 178 (210)
|+...+ .++.+++..++ . ..++.+++|||+++.||+++|+++.+.+.+.
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 354 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence 985321 25566666654 1 3456799999999999999999999988743
No 166
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=1e-21 Score=161.31 Aligned_cols=156 Identities=18% Similarity=0.166 Sum_probs=89.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhC--CCCC----------------------CC------CceeeEEEEEEEEECCeE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISN--SVHD----------------------PS------PTIGVDFKIKLLTVGGKR 60 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~----------------------~~------~~~~~~~~~~~~~~~~~~ 60 (210)
...+||+++|++++|||||+++|+.. .+.. .. ...+.+.......+...+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 35799999999999999999999742 1110 00 011222222222232234
Q ss_pred EEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHh---hHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCC-
Q 028315 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRE---TFTNLSSVWAKEVELYSTNQDCV-KILVGNKVDRDSER- 135 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~- 135 (210)
..+.||||||++.|...+...+..+|++|+|+|++++. +|+... +++..+.... ..++| ++|++||+|+....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~-qt~e~l~~~~-~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG-QTREHAVLAR-TQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTC-CHHHHHHHHH-HTTCSSEEEEEECTTSTTCSS
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCC-cHHHHHHHHH-HcCCCEEEEEEECccCCCccc
Confidence 68999999999999988888899999999999999863 222111 1222222111 24666 99999999995421
Q ss_pred -----ccCHHHHHHHHHHc-------CCeEEEecccCCcCHHHHH
Q 028315 136 -----AVTREEGMILAQEH-------KCLFLECSAKNTEDVKQCF 168 (210)
Q Consensus 136 -----~~~~~~~~~~~~~~-------~~~~~~~sa~~~~~i~~l~ 168 (210)
....++...+.... +++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 01122344455444 3569999999999998765
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=8.3e-22 Score=166.20 Aligned_cols=155 Identities=18% Similarity=0.105 Sum_probs=101.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCC------------------------------ceeeEEEEEEEEECCeEE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSP------------------------------TIGVDFKIKLLTVGGKRL 61 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 61 (210)
..+||+++|++++|||||+++|++........ ..|.+.......+.....
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 46899999999999999999998664322110 123333333334444557
Q ss_pred EEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhh---HHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC
Q 028315 62 KLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRET---FTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT 138 (210)
Q Consensus 62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 138 (210)
.+.||||||++.|...+...++.+|++|+|+|++++.. +.... .+...+.........|++||+||+|+.+.+...
T Consensus 246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~-qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDG-QTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTS-HHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhh-HHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 89999999999999888889999999999999997521 00001 111111111112234599999999997532222
Q ss_pred H----HHHHHHHHHc-----CCeEEEecccCCcCHHHH
Q 028315 139 R----EEGMILAQEH-----KCLFLECSAKNTEDVKQC 167 (210)
Q Consensus 139 ~----~~~~~~~~~~-----~~~~~~~sa~~~~~i~~l 167 (210)
. ++...+.... +++++++||++|.|+.++
T Consensus 325 ~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2 2223333333 358999999999999876
No 168
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=5e-21 Score=150.01 Aligned_cols=121 Identities=18% Similarity=0.170 Sum_probs=94.0
Q ss_pred ECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCC----------CHhhHHHHHHHHHHHHhhhccCCCCcEEEE
Q 028315 56 VGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVT----------RRETFTNLSSVWAKEVELYSTNQDCVKILV 125 (210)
Q Consensus 56 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 125 (210)
+....+.+++|||+|++.++..|..++++++++|+|+|++ +..++.+....|...+.... ..+.|++++
T Consensus 156 ~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~-~~~~piiLv 234 (340)
T 4fid_A 156 FVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF-LKGAVKLIF 234 (340)
T ss_dssp EESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG-GTTSEEEEE
T ss_pred EEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc-cCCCeEEEE
Confidence 3334578999999999999999999999999999999998 67788888755555554332 467899999
Q ss_pred EeCCCCCCCC---------------ccCHHHHHHHHH-Hc--------------------------CCeEEEecccCCcC
Q 028315 126 GNKVDRDSER---------------AVTREEGMILAQ-EH--------------------------KCLFLECSAKNTED 163 (210)
Q Consensus 126 ~nK~Dl~~~~---------------~~~~~~~~~~~~-~~--------------------------~~~~~~~sa~~~~~ 163 (210)
+||+|+...+ ..+.+++..+.. .+ .+.+++|||+++.|
T Consensus 235 ~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~n 314 (340)
T 4fid_A 235 LNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSN 314 (340)
T ss_dssp EECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHH
T ss_pred EECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHH
Confidence 9999984311 123445544332 22 35689999999999
Q ss_pred HHHHHHHHHHHHHc
Q 028315 164 VKQCFKDLLYKILE 177 (210)
Q Consensus 164 i~~l~~~i~~~~~~ 177 (210)
|+.+|..+.+.+++
T Consensus 315 v~~vF~~v~~~Il~ 328 (340)
T 4fid_A 315 IKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999987
No 169
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.83 E-value=2.5e-22 Score=164.96 Aligned_cols=155 Identities=19% Similarity=0.225 Sum_probs=103.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGII 89 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (210)
++..+|+++|++++|||||+++|....+.. ..+.+..+... ..+...+..+.||||||++.|..++...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~--~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGA--YHVETENGMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSC--CCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEE--EEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 456789999999999999999998754432 11111111111 122222347899999999999999988899999999
Q ss_pred EEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC--ccCHHH--HHHHHHHcC--CeEEEecccCCcC
Q 028315 90 LVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER--AVTREE--GMILAQEHK--CLFLECSAKNTED 163 (210)
Q Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~--~~~~~~~~~--~~~~~~sa~~~~~ 163 (210)
+|+|++++...+... .|.. +. ..+.|+++++||+|+.... .+..+. ...+...++ ++++++||++|.|
T Consensus 80 LVVda~~g~~~qT~e-~l~~-~~----~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 80 LVVAADDGVMPQTIE-AIQH-AK----AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EEEETTTBSCTTTHH-HHHH-HH----HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred EEeecccCccHHHHH-HHHH-HH----hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 999999843222222 2221 11 2578999999999996421 111110 001112232 6899999999999
Q ss_pred HHHHHHHHHH
Q 028315 164 VKQCFKDLLY 173 (210)
Q Consensus 164 i~~l~~~i~~ 173 (210)
++++|+++..
T Consensus 154 I~eLle~I~~ 163 (501)
T 1zo1_I 154 IDELLDAILL 163 (501)
T ss_dssp CTTHHHHTTT
T ss_pred cchhhhhhhh
Confidence 9999999875
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=7e-21 Score=147.99 Aligned_cols=160 Identities=21% Similarity=0.128 Sum_probs=101.8
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-----CCCceee----------------------EEE-----------
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-----PSPTIGV----------------------DFK----------- 50 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~----------------------~~~----------- 50 (210)
.....++|+++|.+|||||||+++|++..+.. ..+.++. ++.
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 33456899999999999999999999888642 1111210 000
Q ss_pred ------------EEEEEEC-CeEEEEEEEeCCCCc-------------ccccchhhhhccccEEE-EEEeCCCHhhHHHH
Q 028315 51 ------------IKLLTVG-GKRLKLTIWDTAGQE-------------RFGTLTSSYYRGAHGII-LVYDVTRRETFTNL 103 (210)
Q Consensus 51 ------------~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~ 103 (210)
...+.+. .....+.||||||.. .+......+++.++.++ +|+|+++..+....
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 0000000 012579999999964 23345566788888766 79999876544332
Q ss_pred HHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH--cC-CeEEEecccCCcCHHHHHHHHHH
Q 028315 104 SSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQE--HK-CLFLECSAKNTEDVKQCFKDLLY 173 (210)
Q Consensus 104 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~sa~~~~~i~~l~~~i~~ 173 (210)
. .+...+. ..+.|+++|+||+|+.+......+........ .+ .+++++||++|.|++++++++.+
T Consensus 182 ~-~~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 182 L-KIAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp H-HHHHHHC----TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred H-HHHHHhC----CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 2 2333332 35789999999999976544222222110001 12 36899999999999999999887
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=1.1e-20 Score=165.85 Aligned_cols=160 Identities=14% Similarity=0.036 Sum_probs=109.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCC-------CCC--------CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNS-------VHD--------PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG 75 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~-------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (210)
...+||+++|++++|||||+++|.+.. +.. ...+.+.+.....+.++.....+.||||||++.|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 457999999999999999999997631 100 12334444443334455556789999999999998
Q ss_pred cchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCCcc---CHHHHHHHHHHcC-
Q 028315 76 TLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCV-KILVGNKVDRDSERAV---TREEGMILAQEHK- 150 (210)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 150 (210)
..+...++.+|++|+|+|++++...+... .| ..+.. .++| ++|++||+|+.+.... ..++...+....+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTrE-hL-~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTRE-HI-LLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHHH-HH-HHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHHH-HH-HHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 88888899999999999999864333322 33 33322 3577 7899999999753221 1234455555554
Q ss_pred ----CeEEEecccCC--------cCHHHHHHHHHHHHH
Q 028315 151 ----CLFLECSAKNT--------EDVKQCFKDLLYKIL 176 (210)
Q Consensus 151 ----~~~~~~sa~~~--------~~i~~l~~~i~~~~~ 176 (210)
++++++||++| .|+.++++.|.+.+.
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 58999999999 468888888877554
No 172
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=7.3e-20 Score=139.85 Aligned_cols=127 Identities=20% Similarity=0.220 Sum_probs=86.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhc--------
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYR-------- 83 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-------- 83 (210)
..+||+++|.+|+|||||+++|++.......+..+++.......+...+..+.+|||||++.+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~ 114 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVN 114 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhc
Confidence 579999999999999999999998876443333333333222223223458999999999888766555543
Q ss_pred -cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCCccCH
Q 028315 84 -GAHGIILVYDVTRRETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSERAVTR 139 (210)
Q Consensus 84 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~ 139 (210)
.+|++++|++++... +......|...+..... ....|+++|+||+|+.+.+....
T Consensus 115 ~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 171 (262)
T 3def_A 115 RTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSY 171 (262)
T ss_dssp CEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCH
T ss_pred CCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccH
Confidence 789999999987654 43333355555554431 12359999999999965544443
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.82 E-value=7e-21 Score=156.01 Aligned_cols=152 Identities=17% Similarity=0.149 Sum_probs=100.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhC--CCCCC----------------------------CCceeeEEEEEEEEECCeE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISN--SVHDP----------------------------SPTIGVDFKIKLLTVGGKR 60 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 60 (210)
...++|+++|++++|||||+++|++. .+... ....+.+.......+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 35799999999999999999999764 11100 0001222222222344445
Q ss_pred EEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHh---hHH---HHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCC
Q 028315 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRE---TFT---NLSSVWAKEVELYSTNQDCV-KILVGNKVDRDS 133 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 133 (210)
..+.||||||++.|...+...+..+|++|+|+|++++. +|+ .....+. .+. ..+.| +++++||+|+.+
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~-~~~----~~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAF----TLGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHH----HTTCCEEEEEEECGGGGT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHH-HHH----HcCCCeEEEEEEcccccc
Confidence 68999999999999988888899999999999999763 221 1221222 222 13455 899999999863
Q ss_pred CCc----cCHHHHHHHHHHcC-----CeEEEecccCCcCHHHH
Q 028315 134 ERA----VTREEGMILAQEHK-----CLFLECSAKNTEDVKQC 167 (210)
Q Consensus 134 ~~~----~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~l 167 (210)
... ...++...+...++ ++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 111 11223444445554 68999999999999754
No 174
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.81 E-value=2.2e-19 Score=149.17 Aligned_cols=117 Identities=16% Similarity=0.166 Sum_probs=80.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC---------------------CCCceeeEEEEEEEEECCeEEEEEEEeCC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD---------------------PSPTIGVDFKIKLLTVGGKRLKLTIWDTA 69 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 69 (210)
.+..||+++|++|+|||||+++|+...... ...+.+.+.......+...++.+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 467999999999999999999998632110 01122222222222333345789999999
Q ss_pred CCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
|++.|...+..+++.+|++|+|+|++++...+... .| ..+ ...++|+++++||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~-~~-~~~----~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRK-LM-EVT----RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HH-HHH----TTTTCCEEEEEECTTSCC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHH-HH-HHH----HHcCCCEEEEEcCcCCcc
Confidence 99999988888999999999999999864322211 22 222 245789999999999864
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=1.3e-19 Score=133.77 Aligned_cols=159 Identities=17% Similarity=0.147 Sum_probs=100.0
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc----------cccch
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVH-DPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER----------FGTLT 78 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~ 78 (210)
.....+|+++|++|+|||||++++.+..+. .+.++.+.+.....+.+.+ .+.+|||||... +....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 455689999999999999999999887643 3566777665544444433 578899999742 22222
Q ss_pred hhhh---ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCc--cCHHHHHHHHHHcC--C
Q 028315 79 SSYY---RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERA--VTREEGMILAQEHK--C 151 (210)
Q Consensus 79 ~~~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~ 151 (210)
..++ +.++++++++|+.++.++... .+...+. ..+.|+++++||+|+....+ ...+.+..+....+ +
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~----~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAV----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHH----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHH----HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 2333 468999999999987554321 1222222 24689999999999754321 11233444444443 4
Q ss_pred eEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 152 LFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 152 ~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
.++++||+++.|+++++++|.+.+.+
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred ceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 68999999999999999999887654
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.81 E-value=2.4e-19 Score=152.88 Aligned_cols=118 Identities=13% Similarity=0.175 Sum_probs=83.2
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CC----------C------ceeeEEEEEEEEECCeEEEEEEEeCCCC
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVHD-PS----------P------TIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~----------~------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (210)
..++..+|+++|+.|+|||||+++|++..... .. . ..+.++......+...++.+++|||||+
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 34567899999999999999999998533221 00 0 1122232233333334678999999999
Q ss_pred cccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
+.|...+..+++.+|++++|+|+.+....+... .|... . ..+.|+++++||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~-~~~~~-~----~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTER-AWTVA-E----RLGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHH-H----HTTCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHHH-HHHHH-H----HccCCEEEEecCCchh
Confidence 999888889999999999999998765544332 33322 2 2478999999999986
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.81 E-value=3.4e-19 Score=152.42 Aligned_cols=119 Identities=19% Similarity=0.265 Sum_probs=84.4
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhC--CCCC---------CC------CceeeEEEEEEEEECCeEEEEEEEeCCCC
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISN--SVHD---------PS------PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ 71 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~---------~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (210)
...+..||+++|++|+|||||+++|+.. .+.. .. ...+.+.......+....+.+++|||||+
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~ 87 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGH 87 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCc
Confidence 3467899999999999999999999842 1110 00 01122222222222223578999999999
Q ss_pred cccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 72 ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
..|...+..+++.+|++|+|+|+++..+++... .|..... .+.|+++++||+|+..
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~~~~~-----~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWRQAEK-----YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH-----TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHHHHHH-----cCCCEEEEEECCCccc
Confidence 999999999999999999999999987777665 5554332 4789999999999864
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=1.1e-21 Score=165.10 Aligned_cols=150 Identities=17% Similarity=0.100 Sum_probs=80.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC------------------------------CCCceeeEEEEEEEEECCeE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD------------------------------PSPTIGVDFKIKLLTVGGKR 60 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 60 (210)
...+||+++|++++|||||+++|+...... .....+++.......+...+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 357899999999999999999996421100 01123444444444555556
Q ss_pred EEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHh---hH---HHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCC
Q 028315 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRE---TF---TNLSSVWAKEVELYSTNQDCV-KILVGNKVDRDS 133 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 133 (210)
..+.||||||++.|...+...++.+|++|+|+|++++. .+ .... .....+. ..++| ++||+||+|+.+
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~-e~l~~~~----~lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTR-EHAYLLR----ALGISEIVVSVNKLDLMS 329 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHH-HHHHHHH----HSSCCCEEEEEECGGGGT
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHH-HHHHHHH----HcCCCeEEEEEecccccc
Confidence 78999999999999988888899999999999998642 11 0011 1111121 13455 899999999865
Q ss_pred CCccC----HHHHHHHH-HHcCC-----eEEEecccCCcCHH
Q 028315 134 ERAVT----REEGMILA-QEHKC-----LFLECSAKNTEDVK 165 (210)
Q Consensus 134 ~~~~~----~~~~~~~~-~~~~~-----~~~~~sa~~~~~i~ 165 (210)
..... .++...+. ...++ +++++||++|.|+.
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 22111 12233333 33344 69999999999998
No 179
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.80 E-value=3.4e-19 Score=136.68 Aligned_cols=127 Identities=21% Similarity=0.208 Sum_probs=85.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhh-------h--h
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSS-------Y--Y 82 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~--~ 82 (210)
..++|+++|.+|+|||||+++|++..+....++.+.+.......+...+..+.+|||||...+...... + .
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 579999999999999999999998876554444444443333344444568999999998776543321 1 2
Q ss_pred ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCCccCH
Q 028315 83 RGAHGIILVYDVTRRETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSERAVTR 139 (210)
Q Consensus 83 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~ 139 (210)
+.+|++++|+|++.. ++......|...+..... ....|+++|+||+|+.+.+....
T Consensus 118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~ 174 (270)
T 1h65_A 118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY 174 (270)
T ss_dssp CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence 479999999998653 343333355555554431 12269999999999976554333
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=8.9e-19 Score=149.94 Aligned_cols=164 Identities=18% Similarity=0.223 Sum_probs=108.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCC--CCceee------------EEEE--------------------------
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDP--SPTIGV------------DFKI-------------------------- 51 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~~~~------------~~~~-------------------------- 51 (210)
..++|+|+|.+|+|||||+|+|++...... .|++.. +...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 579999999999999999999998875442 222210 1100
Q ss_pred ---------------EEEEECCeE--EEEEEEeCCCCcc---cccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHH
Q 028315 52 ---------------KLLTVGGKR--LKLTIWDTAGQER---FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEV 111 (210)
Q Consensus 52 ---------------~~~~~~~~~--~~~~l~Dt~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 111 (210)
..+..+... ..+.+|||||... .......+++.+|++|+|+|++++.+..... .|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHHHHH
Confidence 000000000 3589999999544 3345557789999999999999887766655 454443
Q ss_pred hhhccCCCCcEEEEEeCCCCCCCCccCHHH----------HH-----HHHHHc--------CCeEEEeccc---------
Q 028315 112 ELYSTNQDCVKILVGNKVDRDSERAVTREE----------GM-----ILAQEH--------KCLFLECSAK--------- 159 (210)
Q Consensus 112 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~----------~~-----~~~~~~--------~~~~~~~sa~--------- 159 (210)
. ..+.|+++|+||+|+.....++.++ .. .+.... ..+++.+||+
T Consensus 227 ~----~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 227 K----GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp T----TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred H----hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 3 2467899999999986543222111 11 111111 2369999999
Q ss_pred -----CCcCHHHHHHHHHHHHHccch
Q 028315 160 -----NTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 160 -----~~~~i~~l~~~i~~~~~~~~~ 180 (210)
++.|++++++.|.+.+...+.
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~~~~~ 328 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLTRERA 328 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHHHTHH
T ss_pred chhhhhccCHHHHHHHHHHHHHHhHH
Confidence 999999999999987765443
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.78 E-value=7.5e-18 Score=144.35 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=84.8
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCC--CCCC---------C------CceeeEEEEEEEEE-------CCeEEEEE
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNS--VHDP---------S------PTIGVDFKIKLLTV-------GGKRLKLT 64 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~---------~------~~~~~~~~~~~~~~-------~~~~~~~~ 64 (210)
..++..||+|+|+.|+|||||+++|+... +... . ...+.+.......+ ++..+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34677999999999999999999997531 1110 0 01222222222222 12348899
Q ss_pred EEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 65 IWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 65 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
||||||+..|...+...++.+|++|+|+|+++....+... .|.... ..+.|+++++||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~-----~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQAN-----KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHH-----HcCCCEEEEEeCCCccc
Confidence 9999999999888999999999999999999876655544 454332 35789999999999854
No 182
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.77 E-value=2.3e-18 Score=138.80 Aligned_cols=161 Identities=20% Similarity=0.184 Sum_probs=106.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc----cccchhhh---hcccc
Q 028315 15 KILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER----FGTLTSSY---YRGAH 86 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~---~~~~d 86 (210)
.|+++|++|||||||++++++..... ..+..........+..++ ...+.+||+||... +..+...+ +..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 37899999999999999998764321 111111111222233332 24688999999632 22233333 45699
Q ss_pred EEEEEEeCCCHhhHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHH
Q 028315 87 GIILVYDVTRRETFTNLSSVWAKEVELYS-TNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVK 165 (210)
Q Consensus 87 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 165 (210)
.+++++|++ ...+..+. .|...+.... .....|.++++||+|+... ...++........+.+++.+||+++.|++
T Consensus 238 ~lL~vvDls-~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp EEEEEEETT-SCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred hhhEEeCCc-cCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 999999997 44566665 4444443322 1135789999999998653 22233334444557889999999999999
Q ss_pred HHHHHHHHHHHccch
Q 028315 166 QCFKDLLYKILEVPS 180 (210)
Q Consensus 166 ~l~~~i~~~~~~~~~ 180 (210)
+++++|.+.+.+.+.
T Consensus 314 eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 314 ALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999987654
No 183
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.77 E-value=1.5e-18 Score=135.84 Aligned_cols=165 Identities=17% Similarity=0.164 Sum_probs=99.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-----CCCceeeEEEEEE--------------------------------
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-----PSPTIGVDFKIKL-------------------------------- 53 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~-------------------------------- 53 (210)
....+|+|+|.+|+|||||+++|++..+.. .+..++.......
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 345789999999999999999999887622 1122211011100
Q ss_pred ---------------------EE-ECCeEEEEEEEeCCCCcc-------------cccchhhhhccccEEEEEEeCCCHh
Q 028315 54 ---------------------LT-VGGKRLKLTIWDTAGQER-------------FGTLTSSYYRGAHGIILVYDVTRRE 98 (210)
Q Consensus 54 ---------------------~~-~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (210)
+. .......+.||||||... +......+++.+|++++|+|..+..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00 011124689999999753 3345566788999999999974332
Q ss_pred -hHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEeccc---C---CcCHHHHHHHH
Q 028315 99 -TFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSAK---N---TEDVKQCFKDL 171 (210)
Q Consensus 99 -~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~---~---~~~i~~l~~~i 171 (210)
...... .+...+. ..+.|+++|+||+|+........+........++..++.+++. + +.|+.++++.+
T Consensus 182 ~~~~~~~-~i~~~~~----~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 182 LANSDAL-QLAKEVD----PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp STTCSHH-HHHHHHC----SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred hhhhHHH-HHHHHhC----CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 111111 2223332 3578999999999997654322222221001122456665554 4 78999999999
Q ss_pred HHHHHccch
Q 028315 172 LYKILEVPS 180 (210)
Q Consensus 172 ~~~~~~~~~ 180 (210)
.+.+...+.
T Consensus 257 ~~~~~~~~~ 265 (315)
T 1jwy_B 257 ILYFKNHPI 265 (315)
T ss_dssp HHHHHTCTT
T ss_pred HHHHhCCCc
Confidence 888876554
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=4e-18 Score=145.87 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=83.5
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhh--CCCCC---------CCC------ceeeEEEEEEEEECCeEEEEEEEeCCCCc
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLIS--NSVHD---------PSP------TIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~---------~~~------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (210)
..+..+|+++|++|+|||||+++|+. +.+.. ... ..+.+.......+...++.++||||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 45689999999999999999999985 22211 000 11112211112222224689999999999
Q ss_pred ccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 73 RFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
.|...+..+++.+|++|+|+|++++.+.+... .|..... .+.|+++|+||+|+..
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~~-----~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQATT-----YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHHH-----TTCCEEEEEECTTSTT
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHHHHH-----cCCCEEEEEECCCccc
Confidence 99988999999999999999999987776655 5544322 4789999999999864
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.75 E-value=1.3e-19 Score=145.60 Aligned_cols=83 Identities=20% Similarity=0.187 Sum_probs=47.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeE----EEEEEE-------------------EECC-eEEEEEEEeCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVD----FKIKLL-------------------TVGG-KRLKLTIWDTA 69 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~----~~~~~~-------------------~~~~-~~~~~~l~Dt~ 69 (210)
++|+++|.+|||||||+|+|++.. ....+.++++ .....+ .+++ ..+.+.|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 489999999999999999998876 3322222111 111111 1122 25789999999
Q ss_pred CCcc----cccchh---hhhccccEEEEEEeCCCH
Q 028315 70 GQER----FGTLTS---SYYRGAHGIILVYDVTRR 97 (210)
Q Consensus 70 G~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 97 (210)
|... ...+.. .+++.+|++++|+|+++.
T Consensus 80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 9753 222333 346899999999999875
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.75 E-value=9.1e-19 Score=136.15 Aligned_cols=163 Identities=19% Similarity=0.263 Sum_probs=87.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhC-CCCCCC---------CceeeEEEEEEEEECCeEEEEEEEeCCCC-------cc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISN-SVHDPS---------PTIGVDFKIKLLTVGGKRLKLTIWDTAGQ-------ER 73 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~ 73 (210)
...++|+++|++|+|||||++++++. .+.... ++.............+....+.+|||+|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34689999999999999999998765 332211 11111111111112333568999999997 55
Q ss_pred cccchh-------hhhcc-------------ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 74 FGTLTS-------SYYRG-------------AHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 74 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
+..+.. .+++. +++++++.+.+.. ++..... ..+.... ...|+++|+||.|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~---~~l~~l~--~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV---AFMKAIH--NKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH---HHHHHHT--TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH---HHHHHHH--hcCCEEEEEEeCCCCC
Confidence 555544 34432 3446666554321 1222221 2222222 4679999999999875
Q ss_pred CCcc--CHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHHHHHHccch
Q 028315 134 ERAV--TREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKILEVPS 180 (210)
Q Consensus 134 ~~~~--~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 180 (210)
.+++ ..+++..++..++++++++||+++ |++++|.++.+.+.+..+
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 4433 235667778888999999999999 999999999998875443
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.75 E-value=1.4e-18 Score=138.56 Aligned_cols=108 Identities=16% Similarity=0.094 Sum_probs=75.4
Q ss_pred EEEEEEeCCCCccc-------------ccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028315 61 LKLTIWDTAGQERF-------------GTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGN 127 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 127 (210)
..+.+|||||...+ ......+++++|++|+|+|..+...... .|..++.... ..+.|+++|+|
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~---~~~~l~~~~~-~~~~~~i~V~n 211 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVD-PSGDRTFGVLT 211 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC---HHHHHHHHSC-TTCTTEEEEEE
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH---HHHHHHHHhc-ccCCCEEEEEe
Confidence 35899999997765 4456678899999999998765432221 3334443332 45779999999
Q ss_pred CCCCCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHHHHHHHH
Q 028315 128 KVDRDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 128 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
|+|+.+......+....+...++.+|+.++++.+.++++.+..+.
T Consensus 212 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 212 KIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp CGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred CCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 999976655544444444445677899999999999887665543
No 188
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.73 E-value=2.7e-17 Score=137.16 Aligned_cols=117 Identities=14% Similarity=0.160 Sum_probs=85.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCC---------------------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNS---------------------VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTA 69 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 69 (210)
.+.=||+|+|+.++|||||..+|+... +.+.....+++.......+...++.++|+|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 357799999999999999999986211 11112223333333334444456789999999
Q ss_pred CCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
||..|.......++-+|++|+|+|+..+-..+... .|..... .++|.++++||+|...
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~-v~~~a~~-----~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK-LMDVCRM-----RATPVMTFVNKMDREA 166 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH-HHHHHHH-----TTCCEEEEEECTTSCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHH-HHHHHHH-----hCCceEEEEecccchh
Confidence 99999999999999999999999999987666665 6655544 6889999999999753
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=6.8e-18 Score=136.12 Aligned_cols=159 Identities=21% Similarity=0.292 Sum_probs=80.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-C--------CCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc------
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-P--------SPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG------ 75 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------ 75 (210)
...++|+++|++|+|||||++.|++..+.. . .++.............+....+.+||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 346889999999999999999998876532 1 1122211111111112333578999999975431
Q ss_pred -c------------------chhhhhccccE--EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028315 76 -T------------------LTSSYYRGAHG--IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE 134 (210)
Q Consensus 76 -~------------------~~~~~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 134 (210)
. +...++.++++ ++|+.+.+. .++......|...+. .+.|+++|+||+|+...
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccH
Confidence 1 11223444554 444444331 223333323544443 37899999999998765
Q ss_pred CccCH--HHHHHHHHHcCCeEEEecccCCcCHHHHHHHHHHHH
Q 028315 135 RAVTR--EEGMILAQEHKCLFLECSAKNTEDVKQCFKDLLYKI 175 (210)
Q Consensus 135 ~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~ 175 (210)
+++.. +++...+...+++++++|++++.++.++|..+...+
T Consensus 183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 55544 556667777899999999999999998877766543
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.72 E-value=1.9e-18 Score=134.39 Aligned_cols=132 Identities=17% Similarity=0.093 Sum_probs=104.1
Q ss_pred HHHHHHhhCCCC-C-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHh-hHHHHH
Q 028315 28 SILLSLISNSVH-D-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRE-TFTNLS 104 (210)
Q Consensus 28 sli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~ 104 (210)
+|+.++..+.|. . +.||.+..+. .. +.... .+++||+ ++++..++..+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888886 4 7788885544 22 22222 6899999 8999999999999999999999999987 677666
Q ss_pred HHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcC--CeEEEecccCCcCHHHHHHHHH
Q 028315 105 SVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHK--CLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 105 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
.|+..+.. .++|+++|+||+|+.+.+.+ ++...++..++ .++++|||++|.|++++|.++.
T Consensus 106 -~~l~~~~~----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 -KFLVLAEK----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp -HHHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred -HHHHHHHH----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 77776643 57899999999999754433 34556666666 8999999999999999998764
No 191
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.71 E-value=3.6e-17 Score=130.93 Aligned_cols=118 Identities=18% Similarity=0.168 Sum_probs=91.4
Q ss_pred EEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCC----------HhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028315 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTR----------RETFTNLSSVWAKEVELYSTNQDCVKILVGNKV 129 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (210)
.+.+++|||+|++.++..|..++++++++|+|||+++ ..+|+... .|...+.......+.|++||+||+
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~-~~~~~i~~~~~~~~~piiLvgNK~ 294 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL-NLFKSIWNNRWLRTISVILFLNKQ 294 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHH-HHHHHHHTCTTCSSCCEEEEEECH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHH-HHHHHHHhcccCCCCeEEEEEECh
Confidence 3789999999999999999999999999999999999 88999888 454444433224678999999999
Q ss_pred CCCCCCc---c---------------------------CHHHHHHHH-----HH--------cCCeEEEecccCCcCHHH
Q 028315 130 DRDSERA---V---------------------------TREEGMILA-----QE--------HKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 130 Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~sa~~~~~i~~ 166 (210)
|+...+. + ..+++..++ .. ..+.+++|||+++.||++
T Consensus 295 DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~ 374 (402)
T 1azs_C 295 DLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 374 (402)
T ss_dssp HHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHH
T ss_pred hhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHH
Confidence 9843221 1 124444442 11 245688999999999999
Q ss_pred HHHHHHHHHHcc
Q 028315 167 CFKDLLYKILEV 178 (210)
Q Consensus 167 l~~~i~~~~~~~ 178 (210)
+|.++.+.+...
T Consensus 375 vF~~v~~~I~~~ 386 (402)
T 1azs_C 375 VFNDCRDIIQRM 386 (402)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887644
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.68 E-value=3.2e-17 Score=130.31 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=70.8
Q ss_pred EEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCH
Q 028315 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTR 139 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 139 (210)
++.+.||||||... .....+..+|++++|+|....+.++.+. . ...+.|+++|+||+|+........
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~----~------~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK----K------GVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC----T------TSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH----H------hHhhcCCEEEEECCCCcChhHHHH
Confidence 36789999999432 2334468899999999987665432221 0 012468999999999854322211
Q ss_pred HHHHHHHH----------HcCCeEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 140 EEGMILAQ----------EHKCLFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 140 ~~~~~~~~----------~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
....+.. .++.+++.+||++|.|+++++++|.+.+..
T Consensus 238 -~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 -AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp -HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1112221 125789999999999999999999988764
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.67 E-value=3.1e-18 Score=136.09 Aligned_cols=158 Identities=21% Similarity=0.096 Sum_probs=93.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-----CCCceeeEEE-----------------------------------
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-----PSPTIGVDFK----------------------------------- 50 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~----------------------------------- 50 (210)
....+|+|+|.+|||||||+++|.+..+.+ ....++....
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 345799999999999999999999887642 1111221000
Q ss_pred ----------EEEEEEC-CeEEEEEEEeCCCCcc-------------cccchhhhhcccc-EEEEEEeCCCHhhHHHHHH
Q 028315 51 ----------IKLLTVG-GKRLKLTIWDTAGQER-------------FGTLTSSYYRGAH-GIILVYDVTRRETFTNLSS 105 (210)
Q Consensus 51 ----------~~~~~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~ 105 (210)
...+.+. .....+.||||||... +......+++.++ ++++|+|++....-....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~- 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH-
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH-
Confidence 0001111 1135799999999532 2344555665555 555566766532211111
Q ss_pred HHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHH--HHHHcC-CeEEEecccCCcCHHHHHHHHHH
Q 028315 106 VWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMI--LAQEHK-CLFLECSAKNTEDVKQCFKDLLY 173 (210)
Q Consensus 106 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~-~~~~~~sa~~~~~i~~l~~~i~~ 173 (210)
.+...+ . ..+.|+++|+||+|+.+......+.... +....+ .+++.+||+++.|++++++++.+
T Consensus 188 ~i~~~~---~-~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 188 KVAKEV---D-PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHH---C-TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHh---C-cCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 122222 2 4678999999999997543321211110 001123 25788999999999999999876
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.66 E-value=2.8e-16 Score=137.01 Aligned_cols=117 Identities=20% Similarity=0.210 Sum_probs=87.2
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-------------------CCCceeeEEEEEEEE------------ECC
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNSVHD-------------------PSPTIGVDFKIKLLT------------VGG 58 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-------------------~~~~~~~~~~~~~~~------------~~~ 58 (210)
.++..||+|+|++++|||||+++|+...... ...|+........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3567899999999999999999998642110 011221111222222 234
Q ss_pred eEEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 59 KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
..+.++||||||+..|...+..+++.+|++|+|+|++++.+++... .|..... .+.|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~-----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQALG-----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH-----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCeEEEEECCCcc
Confidence 4789999999999999999999999999999999999988877765 5654432 478999999999985
No 195
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.66 E-value=5.7e-17 Score=120.48 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=94.1
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCC-----CceeeEE--------EEEEEEECC------------------eE
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPS-----PTIGVDF--------KIKLLTVGG------------------KR 60 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-----~~~~~~~--------~~~~~~~~~------------------~~ 60 (210)
+..+|+++|.+|+|||||+++|......... ...+.+. ......++. ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 3578999999999999999999765321100 0000000 000011111 23
Q ss_pred EEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHH
Q 028315 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTRE 140 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 140 (210)
..+.+|||+|..... ..+....+.+++|+|+.+.... .. .+... .+.|+++|+||+|+.+......+
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~-~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VE-KHPEI-------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HH-HCHHH-------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hh-hhhhh-------hhcCCEEEEecccCCcchhhHHH
Confidence 567899999851111 0111256889999998865321 11 11111 24688999999998643334455
Q ss_pred HHHHHHHHc--CCeEEEecccCCcCHHHHHHHHHHHHHcc
Q 028315 141 EGMILAQEH--KCLFLECSAKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 141 ~~~~~~~~~--~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 178 (210)
+........ +++++++||++|.|+++++++|.+.+...
T Consensus 176 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 176 KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 555555443 46899999999999999999999877543
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.64 E-value=5.6e-15 Score=116.76 Aligned_cols=81 Identities=22% Similarity=0.230 Sum_probs=54.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCC--ceeeEEEEEEEEECCe---------------EEEEEEEeCCCCcccc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSP--TIGVDFKIKLLTVGGK---------------RLKLTIWDTAGQERFG 75 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~--~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 75 (210)
++|+++|.+|||||||+++|++..+.. ..| |...+.. .+.+.+. ...+.+|||||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 689999999999999999999876322 222 2222221 2233332 1579999999987642
Q ss_pred ----cc---hhhhhccccEEEEEEeCCC
Q 028315 76 ----TL---TSSYYRGAHGIILVYDVTR 96 (210)
Q Consensus 76 ----~~---~~~~~~~~d~~i~v~d~~~ 96 (210)
.+ ...+++.+|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 22 2335789999999999986
No 197
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.63 E-value=3.6e-18 Score=127.44 Aligned_cols=153 Identities=18% Similarity=0.191 Sum_probs=91.2
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEE------------EEEEEEC-Ce------------------
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFK------------IKLLTVG-GK------------------ 59 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~------------~~~~~~~-~~------------------ 59 (210)
+.++|+++|.+|||||||+++|....+.. ..++.+.++. ...+.++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 45899999999999999999998775544 2233332221 1111111 10
Q ss_pred -EEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC
Q 028315 60 -RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT 138 (210)
Q Consensus 60 -~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 138 (210)
...+.++|++|.-.. ...+-...+.++.++|......... .+... ...|.++|+||+|+.+.+...
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~-------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE---KHPGI-------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT---TCHHH-------HTTCSEEEEECGGGHHHHTCC
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh---hhhhH-------hhcCCEEEEeccccCchhHHH
Confidence 114555566663111 0111123455666777532211100 01111 136789999999986544445
Q ss_pred HHHHHHHHHHc--CCeEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 139 REEGMILAQEH--KCLFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 139 ~~~~~~~~~~~--~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
.++...+.... +++++++||++|.|++++|+++.+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 184 IKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 55666655543 5789999999999999999999887754
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.63 E-value=7.4e-16 Score=128.66 Aligned_cols=122 Identities=21% Similarity=0.259 Sum_probs=80.1
Q ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCceeeEEEEEEEEEC------Ce----------------E----
Q 028315 9 SYDYSFKILLIGDSGVGKSSILLSLISNSVH--DPSPTIGVDFKIKLLTVG------GK----------------R---- 60 (210)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~------~~----------------~---- 60 (210)
......+|+|+|.+|+|||||+|+|++..+. ...+.+.++.......-. +. +
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 3456789999999999999999999998764 222222221111100000 00 0
Q ss_pred -------------EEEEEEeCCCCcc-----------cccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhcc
Q 028315 61 -------------LKLTIWDTAGQER-----------FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYST 116 (210)
Q Consensus 61 -------------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 116 (210)
..+.||||||... +...+..++..+|++++|+|+++........ .|...+.
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~-~~l~~l~---- 215 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS-EAIGALR---- 215 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH-HHHHHTT----
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH-HHHHHHH----
Confidence 2589999999764 3345566788999999999998753333333 4444443
Q ss_pred CCCCcEEEEEeCCCCCCCC
Q 028315 117 NQDCVKILVGNKVDRDSER 135 (210)
Q Consensus 117 ~~~~p~ivv~nK~Dl~~~~ 135 (210)
..+.|+++|+||+|+....
T Consensus 216 ~~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 216 GHEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp TCGGGEEEEEECGGGSCHH
T ss_pred hcCCCEEEEEECCCccCHH
Confidence 3467999999999987543
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.59 E-value=1.1e-16 Score=135.84 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=84.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC--CCCC---------CCC------ceeeEEEEEEEEECCeEEEEEEEeCCCCccccc
Q 028315 14 FKILLIGDSGVGKSSILLSLISN--SVHD---------PSP------TIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT 76 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~--~~~~---------~~~------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 76 (210)
-||+|+|+.++|||||..+|+.. .... +.+ ..|.+.......+...++.++|+|||||..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 37899999999999999998632 1111 011 113344444444555667899999999999999
Q ss_pred chhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 77 LTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
.....++-+|++|+|+|+..+-..+... .|..... .++|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~-v~~~a~~-----~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRI-LFHALRK-----MGIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHH-HHHHHHH-----HTCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHH-HHHHHHH-----cCCCeEEEEecccccc
Confidence 9999999999999999999876555554 5655544 4678899999999753
No 200
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.59 E-value=1.8e-14 Score=123.83 Aligned_cols=117 Identities=20% Similarity=0.261 Sum_probs=83.8
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhCC--------CCC---------CCCceeeEEEEEEEEE-------CCeEEEEEE
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISNS--------VHD---------PSPTIGVDFKIKLLTV-------GGKRLKLTI 65 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--------~~~---------~~~~~~~~~~~~~~~~-------~~~~~~~~l 65 (210)
.++.-||+|+|+.++|||||..+|+... ... .....+++.....+.+ ...++.++|
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 4677899999999999999999986321 100 1122233333322222 123689999
Q ss_pred EeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028315 66 WDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD 132 (210)
Q Consensus 66 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 132 (210)
+|||||..|.......++-+|++|+|+|+..+-..+... .|+.... .++|.++++||+|..
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~-v~~~a~~-----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSET-VWRQANK-----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH-----HTCCEEEEEECSSST
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHH-HHHHHHH-----cCCCeEEEEcccccc
Confidence 999999999999999999999999999999886666555 6666654 478999999999974
No 201
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.2e-14 Score=115.48 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=93.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc----cc---hhhhhcc
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG----TL---TSSYYRG 84 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~---~~~~~~~ 84 (210)
..+|+++|.||||||||+|+|++..... .+|..+.+.....+.+.+ .+++|+||||.-.-. .. .-..++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 4789999999999999999998866332 333333333444445554 568888999953221 11 1234678
Q ss_pred ccEEEEEEeCCCHhhHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCC--------CCccCHHHHHHHHHHcCCeEEE
Q 028315 85 AHGIILVYDVTRRETFTNLSSVWAKEVELYS-TNQDCVKILVGNKVDRDS--------ERAVTREEGMILAQEHKCLFLE 155 (210)
Q Consensus 85 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
+|++++|+|++++..- .. .+...+.... .....|.++++||.|... ....+.++...+...+.+..-.
T Consensus 150 ad~il~vvD~~~p~~~--~~-~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp 226 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHH--KQ-IIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE 226 (376)
T ss_dssp CSEEEEEEETTSHHHH--HH-HHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred cCccccccccCccHHH--HH-HHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence 9999999999998432 22 2223333221 124678889999999632 2345666666666665553333
Q ss_pred ecccCCcCHHHHHH
Q 028315 156 CSAKNTEDVKQCFK 169 (210)
Q Consensus 156 ~sa~~~~~i~~l~~ 169 (210)
+-...+...+++.+
T Consensus 227 v~~~~nv~eddl~d 240 (376)
T 4a9a_A 227 IAFRCDATVDDLID 240 (376)
T ss_dssp EEECSCCCHHHHHH
T ss_pred eeecccCCHHHHHH
Confidence 33334455555443
No 202
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=115.48 Aligned_cols=103 Identities=10% Similarity=0.079 Sum_probs=63.1
Q ss_pred EEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCH
Q 028315 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTR 139 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 139 (210)
++.+.++||||.... .......+|.+++|+|++.+...+.+. ..+ ...|.++|+||+|+.+.....
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~----~~i------l~~~~ivVlNK~Dl~~~~~~~- 231 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK----RGI------IEMADLVAVTKSDGDLIVPAR- 231 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------------CCSCSEEEECCCSGGGHHHHH-
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH----HHH------HhcCCEEEEeeecCCCchhHH-
Confidence 356789999995321 234567899999999998764322221 111 245789999999985321110
Q ss_pred HHHHHHHH----------HcCCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 140 EEGMILAQ----------EHKCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 140 ~~~~~~~~----------~~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
.....+.. .++.+++.+||++|.|+++++++|.+.+.
T Consensus 232 ~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 232 RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 01112211 12457899999999999999999988764
No 203
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.56 E-value=9.5e-15 Score=116.05 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=91.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CCC--ceeeEEEEEEEEECC-------------------eEEEEEEEeCCCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHD-PSP--TIGVDFKIKLLTVGG-------------------KRLKLTIWDTAGQ 71 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~--~~~~~~~~~~~~~~~-------------------~~~~~~l~Dt~G~ 71 (210)
++|+++|.+|+|||||++++.+..... ..+ |...+... ..+.+ ....+.+|||||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~--~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV--VPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE--EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee--EecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 578999999999999999998764211 111 12111111 12221 2357999999997
Q ss_pred cccc----cchh---hhhccccEEEEEEeCCCH----------hhHHHHHHHHHHH------------------------
Q 028315 72 ERFG----TLTS---SYYRGAHGIILVYDVTRR----------ETFTNLSSVWAKE------------------------ 110 (210)
Q Consensus 72 ~~~~----~~~~---~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~------------------------ 110 (210)
.... .+.. ..++.+|++++|+|+++. +.++++. .+...
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~-~i~~EL~~~d~~~l~k~~~~~~~~~~~~~ 158 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAE-VVETELLLADLATLERRLERLRKEARADR 158 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHH-HHhhHHHHccHHHHHHHHHHHHhhhccch
Confidence 6542 2222 347899999999999851 1222221 11010
Q ss_pred ---------------Hhh-------------------hccCCCCcEEEEEeCCCCC--CC-CccCHHHHHHHHHHcCCeE
Q 028315 111 ---------------VEL-------------------YSTNQDCVKILVGNKVDRD--SE-RAVTREEGMILAQEHKCLF 153 (210)
Q Consensus 111 ---------------~~~-------------------~~~~~~~p~ivv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~ 153 (210)
+.. ......+|+++++||.|.. +. +....+....++...++++
T Consensus 159 ~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~v 238 (368)
T 2dby_A 159 ERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEV 238 (368)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeE
Confidence 000 0001237999999999742 22 1223445666777778999
Q ss_pred EEecccCCcCHHHHHH
Q 028315 154 LECSAKNTEDVKQCFK 169 (210)
Q Consensus 154 ~~~sa~~~~~i~~l~~ 169 (210)
+.+||+.+.++.++.+
T Consensus 239 v~iSAk~E~el~eL~~ 254 (368)
T 2dby_A 239 VVVSARLEAELAELSG 254 (368)
T ss_dssp EEECHHHHHHHHTSCH
T ss_pred EEeechhHHHHHHhch
Confidence 9999998666555443
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.56 E-value=2.3e-15 Score=118.95 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=65.6
Q ss_pred EEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCH
Q 028315 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTR 139 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 139 (210)
++.+.||||||..... ......+|++++|+|++....++.+. .. ..+.|.++|+||+|+.+...+..
T Consensus 148 ~~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~----~~------~~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 148 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIK----KG------LMEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCC----HH------HHHHCSEEEECCCCTTCHHHHHH
T ss_pred CCCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHH----Hh------hhcccCEEEEECCCCCChHHHHH
Confidence 3578999999965433 23468899999999997654322111 00 01457899999999864322211
Q ss_pred --HHHHHHHHH-------cCCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 140 --EEGMILAQE-------HKCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 140 --~~~~~~~~~-------~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
++....... +..+++.+||++|.|+++++++|.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 011111111 1457899999999999999999998765
No 205
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.54 E-value=3.7e-15 Score=113.47 Aligned_cols=115 Identities=17% Similarity=-0.023 Sum_probs=68.9
Q ss_pred EEEEEEeCCCCcccccchh------hhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028315 61 LKLTIWDTAGQERFGTLTS------SYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSE 134 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 134 (210)
+.+.+|||||......... ..+.. +++++++|+............+........ ..+.|+++|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL-RLGATTIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH-HHTSCEEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc-ccCCCeEEEEeccccccc
Confidence 5789999999865532211 23456 888999987643322222211111111111 246799999999998653
Q ss_pred CccC--------HHHH-HHH-----------------HHHcC--CeEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 135 RAVT--------REEG-MIL-----------------AQEHK--CLFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 135 ~~~~--------~~~~-~~~-----------------~~~~~--~~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
..+. .+.. ..+ ...++ .+++++||+++.|+++++++|.+.+..
T Consensus 187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 3210 0000 010 12333 479999999999999999999887753
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.49 E-value=6.4e-14 Score=119.85 Aligned_cols=159 Identities=20% Similarity=0.122 Sum_probs=96.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEE---------------------------------------
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDF--------------------------------------- 49 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~--------------------------------------- 49 (210)
....+|+|+|.+++|||||+|+|++..+.+ ...++....
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 345689999999999999999999977632 111110000
Q ss_pred ---------EEEEEEEC-CeEEEEEEEeCCCCcc-------------cccchhhhh-ccccEEEEEEeCCCHhhHHHHHH
Q 028315 50 ---------KIKLLTVG-GKRLKLTIWDTAGQER-------------FGTLTSSYY-RGAHGIILVYDVTRRETFTNLSS 105 (210)
Q Consensus 50 ---------~~~~~~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~ 105 (210)
....+.+. .....+.|+||||... +......++ ..+|++++|+|++.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l- 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH-
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH-
Confidence 00011110 0112578999999533 112333344 5789999999998753322221
Q ss_pred HHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHH-H-HHHcC-CeEEEecccCCcCHHHHHHHHHHH
Q 028315 106 VWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMI-L-AQEHK-CLFLECSAKNTEDVKQCFKDLLYK 174 (210)
Q Consensus 106 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~-~~~~~-~~~~~~sa~~~~~i~~l~~~i~~~ 174 (210)
.+...+. ..+.|+++|+||+|+............. + ....+ .+++.+||++|.|++++++.+.+.
T Consensus 208 ~ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 2333333 4578999999999997654432211110 0 00112 357889999999999999998874
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.44 E-value=2.4e-13 Score=105.67 Aligned_cols=97 Identities=21% Similarity=0.132 Sum_probs=76.8
Q ss_pred CcccccchhhhhccccEEEEEEeCCCHh-hHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC-HHHHHHHHHH
Q 028315 71 QERFGTLTSSYYRGAHGIILVYDVTRRE-TFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT-REEGMILAQE 148 (210)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~ 148 (210)
++++..+.+.+++++|++++|+|++++. ++..+. .|+..+.. .++|+++|+||+|+.+.+.+. .++...+...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~-~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~ 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLD-NMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHH-HHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHH-HHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH
Confidence 6777888888999999999999999986 777666 67766553 578999999999996543222 3344555666
Q ss_pred cCCeEEEecccCCcCHHHHHHHHH
Q 028315 149 HKCLFLECSAKNTEDVKQCFKDLL 172 (210)
Q Consensus 149 ~~~~~~~~sa~~~~~i~~l~~~i~ 172 (210)
.+.+++++||++|.|++++++.+.
T Consensus 141 ~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 141 AGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHhhcc
Confidence 788999999999999999987653
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.43 E-value=6.3e-14 Score=110.46 Aligned_cols=104 Identities=7% Similarity=0.046 Sum_probs=64.0
Q ss_pred EEEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCH
Q 028315 60 RLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTR 139 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 139 (210)
+..+.|+||||..... ......+|.+++++|....+..+.+. ..+ ...|.++++||+|+........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~----~~i------~~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIK----KGI------FELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CC----TTH------HHHCSEEEEECCSTTCCHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHH----HHH------hccccEEEEEchhccCchhHHH
Confidence 4578899999964321 23457899999999987543221111 001 1235677889999754322222
Q ss_pred HHHHHHHHH----------cCCeEEEecccCCcCHHHHHHHHHHHHH
Q 028315 140 EEGMILAQE----------HKCLFLECSAKNTEDVKQCFKDLLYKIL 176 (210)
Q Consensus 140 ~~~~~~~~~----------~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 176 (210)
...+.+... +..+++.+||+++.|++++++.|.+.+.
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222233221 2457899999999999999999988654
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.33 E-value=1.2e-12 Score=94.76 Aligned_cols=174 Identities=12% Similarity=0.051 Sum_probs=97.0
Q ss_pred CCCCCCCCCceEEEEEEEcCC-CCcHHHHHHHHhhCC-CCC-------CCCce--eeE--------EEEEEEE-------
Q 028315 2 GSKVGNNSYDYSFKILLIGDS-GVGKSSILLSLISNS-VHD-------PSPTI--GVD--------FKIKLLT------- 55 (210)
Q Consensus 2 ~~~~~~~~~~~~~~i~i~G~~-~~GKSsli~~l~~~~-~~~-------~~~~~--~~~--------~~~~~~~------- 55 (210)
.+++.+--...+.|+++.|+. ..=..+|+.+++..+ ..+ ...-+ |.. +...+..
T Consensus 5 ~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er 84 (227)
T 3l82_B 5 TSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKER 84 (227)
T ss_dssp CCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC-----
T ss_pred HHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHh
Confidence 456666666778999999953 123558999987754 211 00111 110 1100000
Q ss_pred ----ECCe--EEEEEEEeCC------CCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHH---HHHhhhccCCCC
Q 028315 56 ----VGGK--RLKLTIWDTA------GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWA---KEVELYSTNQDC 120 (210)
Q Consensus 56 ----~~~~--~~~~~l~Dt~------G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 120 (210)
..+. .-++-...+| |++.++.+|+.|+.++|++|||+|.+|...++ ....+. .++.......+.
T Consensus 85 ~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~ga 163 (227)
T 3l82_B 85 DRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGR 163 (227)
T ss_dssp --------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCS
T ss_pred hhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCC
Confidence 0000 0122233344 78888999999999999999999999986554 332332 222211112578
Q ss_pred cEEEEEeCC-CCCCCCccCHHHHHHHHH----HcCCeEEEecccCCcCHHHHHHHHHHHHHcc
Q 028315 121 VKILVGNKV-DRDSERAVTREEGMILAQ----EHKCLFLECSAKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 121 p~ivv~nK~-Dl~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 178 (210)
|++|++||. |+.. ..+..+..+... ...+.+..|||.+|.|+.+-++||.+.+..+
T Consensus 164 pLLVlANKqqDlp~--Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 164 PLLVLSCISQGDVK--RMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp CEEEEEEESSTTSC--BCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred eEEEEeCCCcCccC--CCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 999999995 6743 345444332221 1244699999999999999999998776544
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.28 E-value=2.3e-12 Score=102.80 Aligned_cols=88 Identities=22% Similarity=0.198 Sum_probs=51.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCCccc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD-PSPTIGVDFKIKLLTVGGK---------------RLKLTIWDTAGQERF 74 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 74 (210)
...++|+++|.+|+|||||++++.+..+.. ..|..+.+.....+.+.+. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 346899999999999999999998876522 2333333333333444332 235899999997654
Q ss_pred cc-------chhhhhccccEEEEEEeCCCHh
Q 028315 75 GT-------LTSSYYRGAHGIILVYDVTRRE 98 (210)
Q Consensus 75 ~~-------~~~~~~~~~d~~i~v~d~~~~~ 98 (210)
.. .+..+++.+|++++|+|+.+..
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 32 4456789999999999998643
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.25 E-value=2.2e-10 Score=91.61 Aligned_cols=86 Identities=22% Similarity=0.281 Sum_probs=58.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCCcc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVDFKIKLLTVGGK---------------RLKLTIWDTAGQER 73 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 73 (210)
....+++++|++|||||||+|.|.+..... ..|....+.....+.+.+. ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 446799999999999999999999876533 3333333333334444431 13588999999432
Q ss_pred -------cccchhhhhccccEEEEEEeCCC
Q 028315 74 -------FGTLTSSYYRGAHGIILVYDVTR 96 (210)
Q Consensus 74 -------~~~~~~~~~~~~d~~i~v~d~~~ 96 (210)
+...+...++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234455789999999999874
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.20 E-value=2e-11 Score=92.68 Aligned_cols=108 Identities=6% Similarity=-0.040 Sum_probs=74.5
Q ss_pred CCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHH---HHHhhhccCCCCcEEEEEeC-CCCCCCCccCHHHHH
Q 028315 68 TAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWA---KEVELYSTNQDCVKILVGNK-VDRDSERAVTREEGM 143 (210)
Q Consensus 68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~ivv~nK-~Dl~~~~~~~~~~~~ 143 (210)
.+|++..+..|+.|+.++|++|+|+|.+|.+.++ ....+. .++.......+.|++|++|| .|+.. .++..+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence 3567888999999999999999999999987654 222222 23322211368899999996 58753 34444433
Q ss_pred HHHH----HcCCeEEEecccCCcCHHHHHHHHHHHHHcc
Q 028315 144 ILAQ----EHKCLFLECSAKNTEDVKQCFKDLLYKILEV 178 (210)
Q Consensus 144 ~~~~----~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 178 (210)
+... .....+..|||.+|.|+.+-++||.+.+..+
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 2211 1234599999999999999999999887544
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.08 E-value=2.3e-11 Score=97.00 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=84.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC-----CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcccc--------cchhh
Q 028315 14 FKILLIGDSGVGKSSILLSLISN-----SVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFG--------TLTSS 80 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~ 80 (210)
.+|+++|.+|+|||||+|++++. ......+.++++.....+.+... +.++||||..... .....
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 47999999999999999999876 22223344444555544454432 6888999953221 11122
Q ss_pred hh--ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEecc
Q 028315 81 YY--RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECSA 158 (210)
Q Consensus 81 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa 158 (210)
++ ...|.++++++......+..+. . +.... ..+.|+++++||.|....... ......+.+..+..+...++
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~-~----l~~l~-~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLA-R----LDYIK-GGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTE-E----EEEEE-SSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred HhcccccCceEEEEcCCceEEECCEE-E----EEEcc-CCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence 22 6689999999984321111111 0 11111 356899999999998654433 23344556667766666666
Q ss_pred cCCcC
Q 028315 159 KNTED 163 (210)
Q Consensus 159 ~~~~~ 163 (210)
.+..+
T Consensus 313 ~~~~~ 317 (369)
T 3ec1_A 313 RYAAE 317 (369)
T ss_dssp GGTTT
T ss_pred hhhhh
Confidence 54433
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.02 E-value=5.3e-10 Score=89.04 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=73.5
Q ss_pred CCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHH----HH
Q 028315 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGM----IL 145 (210)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~ 145 (210)
..+.|...+..+++.+|++++|+|+.++.. .|...+.... .+.|+++|+||+|+.+.. ...++.. .+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~------~~~~~l~~~~--~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~ 125 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNG------SWLPGLHRFV--GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYS 125 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHH------HCCTTHHHHS--SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcc------cHHHHHHHHh--CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHH
Confidence 457888889999999999999999998642 5555555554 478999999999996543 3333333 33
Q ss_pred HHHcCC---eEEEecccCCcCHHHHHHHHHHHH
Q 028315 146 AQEHKC---LFLECSAKNTEDVKQCFKDLLYKI 175 (210)
Q Consensus 146 ~~~~~~---~~~~~sa~~~~~i~~l~~~i~~~~ 175 (210)
....+. +++.+||++|.|++++++.+.+..
T Consensus 126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 455676 799999999999999999987654
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.98 E-value=7.9e-10 Score=91.06 Aligned_cols=151 Identities=14% Similarity=0.093 Sum_probs=84.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHh------hCCCCC-----CCCce-----------eeEEEEEEEE-------------
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLI------SNSVHD-----PSPTI-----------GVDFKIKLLT------------- 55 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~------~~~~~~-----~~~~~-----------~~~~~~~~~~------------- 55 (210)
.....|+++|.+||||||++++|. +..... +.+.. +..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346789999999999999999997 322111 00000 0111110000
Q ss_pred ECCeEEEEEEEeCCCCcccc-cchhh---h--hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcE-EEEEeC
Q 028315 56 VGGKRLKLTIWDTAGQERFG-TLTSS---Y--YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVK-ILVGNK 128 (210)
Q Consensus 56 ~~~~~~~~~l~Dt~G~~~~~-~~~~~---~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK 128 (210)
....++.+.|+||||..... .++.. . +..+|.+++|+|+........ ....+.. ..|+ .+|+||
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~-----~~~i~gvVlNK 249 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD-----KVDVASVIVTK 249 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH-----HHCCCCEEEEC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh-----hcCceEEEEeC
Confidence 00034578999999965432 11111 1 227899999999987643211 1122221 1464 899999
Q ss_pred CCCCCCCccCHHHHHHHHHHcCCeE------------------EEecccCCcC-HHHHHHHHHHH
Q 028315 129 VDRDSERAVTREEGMILAQEHKCLF------------------LECSAKNTED-VKQCFKDLLYK 174 (210)
Q Consensus 129 ~Dl~~~~~~~~~~~~~~~~~~~~~~------------------~~~sa~~~~~-i~~l~~~i~~~ 174 (210)
.|...... .........+.|+ +.+|+..|.| +.++++++.+.
T Consensus 250 ~D~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 250 LDGHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TTSCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CccccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99853221 1222333444443 3468889988 99988887765
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.93 E-value=1.2e-10 Score=92.82 Aligned_cols=135 Identities=11% Similarity=0.127 Sum_probs=78.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccccc----chhh---
Q 028315 14 FKILLIGDSGVGKSSILLSLISNS------VHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFGT----LTSS--- 80 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~~--- 80 (210)
.+|+++|.+|+|||||+|++++.. .....+.++++.....+.+... +.++||||...... +...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 478999999999999999998763 1114455666666555555443 78899999533221 1111
Q ss_pred -h--hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEec
Q 028315 81 -Y--YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILAQEHKCLFLECS 157 (210)
Q Consensus 81 -~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s 157 (210)
+ ....+.++++++......+..+. . +.. ....+.|+++++||.|....... ......+.+..|..+...+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~--~---~d~-l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA--R---FDY-VSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE--E---EEE-EESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred HhccccccCceEEEEcCCCEEEEcceE--E---EEE-ecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence 1 25678889999874321111111 0 111 11356899999999998654433 2333445556666555444
Q ss_pred c
Q 028315 158 A 158 (210)
Q Consensus 158 a 158 (210)
+
T Consensus 311 ~ 311 (368)
T 3h2y_A 311 P 311 (368)
T ss_dssp H
T ss_pred h
Confidence 4
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.92 E-value=1.2e-08 Score=82.09 Aligned_cols=159 Identities=17% Similarity=0.182 Sum_probs=88.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCceeeE--EEEEEEEECCeEEEEEEEeCCCCcccccchhhh-----hc
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD--PSPTIGVD--FKIKLLTVGGKRLKLTIWDTAGQERFGTLTSSY-----YR 83 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~-----~~ 83 (210)
...++++|++|+|||||+|.+.+..... .....+.. ....... ......+.+||++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 4579999999999999999998743222 11111111 1001111 1111257889999853222222222 23
Q ss_pred cccEEEEEEeCC--CHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC-------CCCccCHHHH----HHHH----
Q 028315 84 GAHGIILVYDVT--RRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRD-------SERAVTREEG----MILA---- 146 (210)
Q Consensus 84 ~~d~~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~~~----~~~~---- 146 (210)
..+..++ ++.. ..+.. .+...+. ..+.|+++|.||.|+. .-.....++. ..+.
T Consensus 148 ~~~~~~~-lS~G~~~kqrv-----~la~aL~----~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 148 EYDFFII-ISATRFKKNDI-----DIAKAIS----MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp GCSEEEE-EESSCCCHHHH-----HHHHHHH----HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCeEE-eCCCCccHHHH-----HHHHHHH----hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4455555 7776 32221 1222222 2467999999999863 1111122222 2222
Q ss_pred HHcC---CeEEEecc--cCCcCHHHHHHHHHHHHHccchhh
Q 028315 147 QEHK---CLFLECSA--KNTEDVKQCFKDLLYKILEVPSLL 182 (210)
Q Consensus 147 ~~~~---~~~~~~sa--~~~~~i~~l~~~i~~~~~~~~~~~ 182 (210)
...+ ..++.+|+ ..+.|++++.+.+.+.+.+.+..+
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~ 258 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN 258 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence 1222 35788999 566779999999999988777655
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.92 E-value=2.3e-09 Score=86.38 Aligned_cols=140 Identities=21% Similarity=0.255 Sum_probs=70.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCC---CCCceeeEEEEEEEEECCe--EEEEEEEeCCCCcccc------------
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHD---PSPTIGVDFKIKLLTVGGK--RLKLTIWDTAGQERFG------------ 75 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~------------ 75 (210)
.++++|+|++|+|||||++.+++..+.. .....+.......+..... ...+.++|++|.....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 4679999999999999999998875432 1111222222222222222 2478899999853221
Q ss_pred --cchhhhh-------------cc--ccE-EEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc
Q 028315 76 --TLTSSYY-------------RG--AHG-IILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV 137 (210)
Q Consensus 76 --~~~~~~~-------------~~--~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 137 (210)
..+..++ .. +|+ ++++.|...+.+..++ .+...+ ..+.|+++|.||+|.....++
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L-----~~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKL-----DSKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHT-----CSCSEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHH-----hhCCCEEEEEcchhccchHHH
Confidence 0111111 11 233 5556666554333322 222222 257899999999997544332
Q ss_pred CH--HHHHHHHHHcCCeEEEeccc
Q 028315 138 TR--EEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 138 ~~--~~~~~~~~~~~~~~~~~sa~ 159 (210)
.. ..+.......|++++.+|..
T Consensus 195 ~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 195 TKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHHHHcCCcEEecCCC
Confidence 11 11111122346677777643
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.89 E-value=1.3e-09 Score=86.87 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=71.8
Q ss_pred CCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHH----H
Q 028315 70 GQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMI----L 145 (210)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~ 145 (210)
.++.|...+..+++.++++++|+|+.++.+ .|...+.... .+.|+++|+||+|+.+.. ...+.... +
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l--~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~ 127 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFA--ADNPILLVGNKADLLPRS-VKYPKLLRWMRRM 127 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHC--TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHh--CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHH
Confidence 477888899888899999999999999864 3444444443 478999999999997542 22333332 3
Q ss_pred HHHcCC---eEEEecccCCcCHHHHHHHHHHHH
Q 028315 146 AQEHKC---LFLECSAKNTEDVKQCFKDLLYKI 175 (210)
Q Consensus 146 ~~~~~~---~~~~~sa~~~~~i~~l~~~i~~~~ 175 (210)
....|. .++.+||++|.|++++++.+.+.+
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 455566 689999999999999999987654
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.82 E-value=3.7e-09 Score=81.19 Aligned_cols=59 Identities=25% Similarity=0.419 Sum_probs=37.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQE 72 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (210)
...++|+++|.||+|||||+|++.+.......+.++++.....+.+.. .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 356899999999999999999999887666666666665554444432 57899999964
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.74 E-value=1.6e-08 Score=77.11 Aligned_cols=136 Identities=19% Similarity=0.166 Sum_probs=68.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCCCCCCC-------CceeeE-EEEEEEEECCe--EEEEEEEeCCCCcccc---c---
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNSVHDPS-------PTIGVD-FKIKLLTVGGK--RLKLTIWDTAGQERFG---T--- 76 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-------~~~~~~-~~~~~~~~~~~--~~~~~l~Dt~G~~~~~---~--- 76 (210)
.++++++|+.|+|||||++.+++...+... +..... .....+..... ...+.++|++|..... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 589999999999999999999875432210 000000 01111111111 2367899999832110 0
Q ss_pred chhh----------------------hhccccEEEEEEeCC-CHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 77 LTSS----------------------YYRGAHGIILVYDVT-RRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 77 ~~~~----------------------~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
.... .+..++++++++|.. .+..-.+. .+...+. .. .++++|++|+|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~--~~l~~L~----~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL--EFMKHLS----KV-VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH--HHHHHHH----TT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH--HHHHHHH----hc-CcEEEEEeccccCC
Confidence 0000 012368899999955 22222221 2223332 23 89999999999754
Q ss_pred CCccCH--HHHHHHHHHcCCeEEE
Q 028315 134 ERAVTR--EEGMILAQEHKCLFLE 155 (210)
Q Consensus 134 ~~~~~~--~~~~~~~~~~~~~~~~ 155 (210)
..+... ..........++.++.
T Consensus 155 ~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 155 LEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHcCccccC
Confidence 332211 1222233445666554
No 222
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.73 E-value=3.3e-09 Score=80.58 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=36.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCcc
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQER 73 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (210)
++++++|.+|+|||||+|++.+.......++++.+.....+.+.. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 699999999999999999999877666666666655543333332 578999999654
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.72 E-value=1.8e-08 Score=77.32 Aligned_cols=101 Identities=12% Similarity=-0.007 Sum_probs=68.1
Q ss_pred eCCCCcc-cccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHH
Q 028315 67 DTAGQER-FGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMIL 145 (210)
Q Consensus 67 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 145 (210)
..|||.. ........+..+|+++.|+|+.++.+.... .+.... .++|.++|+||+|+.+... .+....+
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~------~l~~~l--~~kp~ilVlNK~DL~~~~~--~~~~~~~ 74 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP------MIEDIL--KNKPRIMLLNKADKADAAV--TQQWKEH 74 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH------HHHHHC--SSSCEEEEEECGGGSCHHH--HHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH------HHHHHH--CCCCEEEEEECcccCCHHH--HHHHHHH
Confidence 5788753 334555668899999999999998775421 111111 4789999999999965311 1122233
Q ss_pred HHHcCCeEEEecccCCcCHHHHHHHHHHHHHc
Q 028315 146 AQEHKCLFLECSAKNTEDVKQCFKDLLYKILE 177 (210)
Q Consensus 146 ~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 177 (210)
....+.+++.+||+++.|++++++.+.+.+..
T Consensus 75 ~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 75 FENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 34457889999999999999999988877654
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.60 E-value=1e-07 Score=77.14 Aligned_cols=135 Identities=18% Similarity=0.155 Sum_probs=74.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCC-----------CCC-----------ceeeEEEEEEEEEC------------
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHD-----------PSP-----------TIGVDFKIKLLTVG------------ 57 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----------~~~-----------~~~~~~~~~~~~~~------------ 57 (210)
++..|+++|.+|+||||++..|....... +.+ ..+..+.......+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35788999999999999999885311000 000 00111110000000
Q ss_pred -CeEEEEEEEeCCCCccccc-chh-----hhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCC
Q 028315 58 -GKRLKLTIWDTAGQERFGT-LTS-----SYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVD 130 (210)
Q Consensus 58 -~~~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (210)
..++.+.++||||...... ... .....+|.+++|+|+.......... ..+.. .-.+..||+||.|
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a----~~f~~----~~~i~gVIlTKlD 250 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA----LAFKE----ATPIGSIIVTKLD 250 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH----HHHHH----SCTTEEEEEECCS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH----HHHHh----hCCCeEEEEECCC
Confidence 0126788999999543221 111 1133579999999998765432222 22221 1235568999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEecc
Q 028315 131 RDSERAVTREEGMILAQEHKCLFLECSA 158 (210)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~~~~~~~sa 158 (210)
..... -.+.......+.|+.+++.
T Consensus 251 ~~~~g----G~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 251 GSAKG----GGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp SCSSH----HHHHHHHHTTCCCEEEEEC
T ss_pred Ccccc----cHHHHHHHHHCCCEEEEEc
Confidence 75322 2344455567888877775
No 225
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.40 E-value=1.4e-07 Score=73.03 Aligned_cols=91 Identities=15% Similarity=0.083 Sum_probs=61.9
Q ss_pred ccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCcc--CHHHHHHHHHHcCCe
Q 028315 75 GTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAV--TREEGMILAQEHKCL 152 (210)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~ 152 (210)
..+.+..+.++|.+++|+|+.+|..-....+.++...+ ..++|.++|+||+|+.+.... ..+.........|.+
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~ 152 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD 152 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe
Confidence 44555678899999999999987644334334544443 467889999999999764320 012223333456889
Q ss_pred EEEecccCCcCHHHHHH
Q 028315 153 FLECSAKNTEDVKQCFK 169 (210)
Q Consensus 153 ~~~~sa~~~~~i~~l~~ 169 (210)
++.+||.++.|++++++
T Consensus 153 v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIP 169 (307)
T ss_dssp EEECCHHHHTTCTTTGG
T ss_pred EEEEecCCCCCHHHHHh
Confidence 99999999888776554
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.35 E-value=2.1e-07 Score=70.60 Aligned_cols=93 Identities=14% Similarity=0.056 Sum_probs=60.6
Q ss_pred CCCCccc-ccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccCHHHHHHHH
Q 028315 68 TAGQERF-GTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVTREEGMILA 146 (210)
Q Consensus 68 t~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 146 (210)
.|||... .......+..+|+++.|+|+.++.+..... +. . . ++|.++|+||+|+.+... .+....+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~------l~-l--l-~k~~iivlNK~DL~~~~~--~~~~~~~~ 71 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG------VD-F--S-RKETIILLNKVDIADEKT--TKKWVEFF 71 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT------SC-C--T-TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH------HH-h--c-CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence 4776533 234556688999999999999987643211 11 1 1 789999999999975321 11222333
Q ss_pred HHcCCeEEEecccCCcCHHHHHHHHHH
Q 028315 147 QEHKCLFLECSAKNTEDVKQCFKDLLY 173 (210)
Q Consensus 147 ~~~~~~~~~~sa~~~~~i~~l~~~i~~ 173 (210)
...+.++ .+||+++.|++++++.+.+
T Consensus 72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 72 KKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 4457788 9999999999998877644
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.33 E-value=2.9e-07 Score=74.65 Aligned_cols=84 Identities=21% Similarity=0.214 Sum_probs=47.8
Q ss_pred EEEEEEEeCCCCccccc-chh---hh--hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCC-c-EEEEEeCCCC
Q 028315 60 RLKLTIWDTAGQERFGT-LTS---SY--YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDC-V-KILVGNKVDR 131 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl 131 (210)
.+.+.++||||...... +.. .. +..+|.+++|+|+..... .. .....+. ... | ..+|+||.|.
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~-~~~~~~~-----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AG-IQAKAFK-----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HH-HHHHHHH-----TTSCSCEEEEEECSSS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HH-HHHHHHh-----hcccCCeEEEEeCCCC
Confidence 45788999999654321 111 11 226899999999876542 22 1112221 234 5 7899999997
Q ss_pred CCCCccCHHHHHHHHHHcCCeEEEe
Q 028315 132 DSERAVTREEGMILAQEHKCLFLEC 156 (210)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
.... .....+....+.++..+
T Consensus 251 ~~~~----g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 251 SAKG----GGALSAVAETKAPIKFI 271 (432)
T ss_dssp CSTT----HHHHHHHHHSSCCEEEE
T ss_pred ccch----HHHHHHHHHHCCCEEEe
Confidence 4321 12334555666665544
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.31 E-value=7.6e-07 Score=72.03 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=51.7
Q ss_pred EEEEEEEeCCCCcc--cc-cchh---hh--hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028315 60 RLKLTIWDTAGQER--FG-TLTS---SY--YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDR 131 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~--~~-~~~~---~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 131 (210)
.+.+.++||||... .. .+.. .. ....|.+++|+|+...+........+... -.+..||+||.|.
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~--------~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA--------SPIGSVIITKMDG 250 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH--------CSSEEEEEECGGG
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc--------cCCcEEEEecccc
Confidence 45678999999543 11 1111 11 12468999999998764433222122211 1356789999997
Q ss_pred CCCCccCHHHHHHHHHHcCCeEEEecc
Q 028315 132 DSERAVTREEGMILAQEHKCLFLECSA 158 (210)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~sa 158 (210)
... .-.+.......+.|+.+++.
T Consensus 251 ~a~----~G~als~~~~~g~Pi~fig~ 273 (433)
T 3kl4_A 251 TAK----GGGALSAVVATGATIKFIGT 273 (433)
T ss_dssp CSC----HHHHHHHHHHHTCEEEEEEC
T ss_pred ccc----chHHHHHHHHHCCCEEEEEC
Confidence 432 22345555667899887776
No 229
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.30 E-value=4.6e-07 Score=76.00 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=39.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCce-eeEEEEEEE--EE-CCeEEEEEEEeCCCCcc
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNSVH-DPSPTI-GVDFKIKLL--TV-GGKRLKLTIWDTAGQER 73 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~~-~~~~~~~~~--~~-~~~~~~~~l~Dt~G~~~ 73 (210)
.+.++|+|+|.||+|||||+|+|++.... ....++ +.+.....+ .+ ...+..+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 56789999999999999999999887642 222111 222211111 11 12335688999999643
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.17 E-value=2.2e-06 Score=66.14 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=55.0
Q ss_pred EEEEEEEeCCCCcc--cc-cchh-----hhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCC
Q 028315 60 RLKLTIWDTAGQER--FG-TLTS-----SYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCV-KILVGNKVD 130 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~--~~-~~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D 130 (210)
.+.+.++||||... .. .+.. ..+..+|.+++|+|+..... .... ...+. ...| ..+|+||.|
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~-~~~~~-----~~~~i~gvVlnk~D 250 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDL-ASKFN-----QASKIGTIIITKMD 250 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHH-HHHHH-----HTCTTEEEEEECGG
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHH-HHHHH-----hhCCCCEEEEeCCC
Confidence 45689999999765 21 1221 12457899999999875432 2211 12222 1245 678899999
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEecccCCcCHHH
Q 028315 131 RDSERAVTREEGMILAQEHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 166 (210)
.... ......+....+.++..++ .|.++++
T Consensus 251 ~~~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 251 GTAK----GGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp GCTT----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred CCcc----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 6421 2334556677788887776 4555544
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.01 E-value=6.1e-06 Score=69.84 Aligned_cols=22 Identities=45% Similarity=0.616 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028315 16 ILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~ 37 (210)
|+++|+.|+|||||++.+.+-.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 8999999999999999998764
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.00 E-value=1.2e-05 Score=62.92 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=50.8
Q ss_pred EEEEEeCCCCcccccc-hhhh-----hccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCC
Q 028315 62 KLTIWDTAGQERFGTL-TSSY-----YRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSER 135 (210)
Q Consensus 62 ~~~l~Dt~G~~~~~~~-~~~~-----~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 135 (210)
.+.++||+|....... .... .-..|-.++++|+.......... ..+... .+ ...+++||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~----~~~~~~---~~-it~iilTKlD~~a~- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQA----RQFNEA---VK-IDGIILTKLDADAR- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHH----HHHHHH---SC-CCEEEEECGGGCSC-
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHH----HHHHHh---cC-CCEEEEeCcCCccc-
Confidence 4567899996443221 1111 12478899999987664322221 222211 12 33788899996321
Q ss_pred ccCHHHHHHHHHHcCCeEEEecccCCcCHHH
Q 028315 136 AVTREEGMILAQEHKCLFLECSAKNTEDVKQ 166 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 166 (210)
.-.+.......+.|+..++ +|.++++
T Consensus 284 ---~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 284 ---GGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp ---CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred ---hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 1234556667788888777 5555543
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.87 E-value=2.2e-05 Score=61.97 Aligned_cols=85 Identities=16% Similarity=0.147 Sum_probs=54.3
Q ss_pred hhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCCccC-HHHHHHHHHHcCCeEEEeccc
Q 028315 81 YYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDSERAVT-REEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~sa~ 159 (210)
.+.++|.+++|... +|..-....+.|+...+ ..++|.++|+||+|+.+..... .++........|.+++.+||.
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH 201 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence 35789999988654 56533333334444333 2467789999999997543210 111222234568899999999
Q ss_pred CCcCHHHHHHH
Q 028315 160 NTEDVKQCFKD 170 (210)
Q Consensus 160 ~~~~i~~l~~~ 170 (210)
++.|++++...
T Consensus 202 ~~~gl~~L~~~ 212 (358)
T 2rcn_A 202 TQDGLKPLEEA 212 (358)
T ss_dssp TTBTHHHHHHH
T ss_pred CCcCHHHHHHh
Confidence 99999987653
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.83 E-value=1.8e-05 Score=64.20 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=22.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.+..-|+|+|++++|||+|+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45677899999999999999999863
No 235
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.74 E-value=6.5e-07 Score=73.53 Aligned_cols=99 Identities=14% Similarity=0.082 Sum_probs=56.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCCccc--ccch--------hhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNSVHDPSPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERF--GTLT--------SSY 81 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~--------~~~ 81 (210)
...+|+++|.+|+||||+.++|.........++.............+......+||..|.+.+ ...+ ..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999865433222222221100000000111123457888876322 2222 445
Q ss_pred hccccEEEEEEeCCCHhhHHHHHHHHHHHHh
Q 028315 82 YRGAHGIILVYDVTRRETFTNLSSVWAKEVE 112 (210)
Q Consensus 82 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 112 (210)
+...++.++|+|.++.. .+... .|...+.
T Consensus 118 l~~~~G~~vV~D~tn~~-~~~R~-~~~~~~~ 146 (469)
T 1bif_A 118 LSEEGGHVAVFDATNTT-RERRA-MIFNFGE 146 (469)
T ss_dssp HHTTCCSEEEEESCCCS-HHHHH-HHHHHHH
T ss_pred HHhCCCCEEEEeCCCCC-HHHHH-HHHHHHH
Confidence 66678889999999873 33333 5655554
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.57 E-value=0.00031 Score=56.93 Aligned_cols=84 Identities=17% Similarity=0.084 Sum_probs=46.1
Q ss_pred EEEEEEEeCCCCccccc-chhh-----hhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCC
Q 028315 60 RLKLTIWDTAGQERFGT-LTSS-----YYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCV-KILVGNKVDRD 132 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 132 (210)
.+.+.++||||...... .... .+..++.+++|+|+......... ...+.. ..+ .-+|+||.|..
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~----~~~f~~-----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT----AKAFNE-----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH----HHHHHH-----HSCCCCEEEECTTSS
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH----HHHHhc-----cCCCeEEEEecCCCC
Confidence 45788999999644321 2211 23468999999999865432211 122221 233 24689999974
Q ss_pred CCCccCHHHHHHHHHHcCCeEEEe
Q 028315 133 SERAVTREEGMILAQEHKCLFLEC 156 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
... . .+..+....+.|+..+
T Consensus 254 ~~~--g--~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 254 ARG--G--AALSIRHITGKPIKFL 273 (433)
T ss_dssp SCC--T--HHHHHHHHHCCCEEEE
T ss_pred ccH--H--HHHHHHHHHCCCeEEE
Confidence 322 1 3334555556654333
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.34 E-value=0.00013 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.748 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
+++++|++|+|||||++.+.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999987643
No 238
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.28 E-value=0.001 Score=53.68 Aligned_cols=86 Identities=20% Similarity=0.171 Sum_probs=47.2
Q ss_pred EEEEEEEeCCCCccccc-chhh-----hhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 60 RLKLTIWDTAGQERFGT-LTSS-----YYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
.+.+.++||||...... .... ..-.+|.+++|+|+........ .. ..+... .+ ..-||+||.|...
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~---~a-~~f~~~---l~-i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS---VA-RAFDEK---VG-VTGLVLTKLDGDA 251 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHH---HH-HHHHHH---TC-CCEEEEESGGGCS
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHH---HH-HHHHhc---CC-ceEEEEeCcCCcc
Confidence 35688999999643321 1111 1225899999999875432221 11 122211 11 2457889998642
Q ss_pred CCccCHHHHHHHHHHcCCeEEEec
Q 028315 134 ERAVTREEGMILAQEHKCLFLECS 157 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~s 157 (210)
.. ..+.......+.++.++.
T Consensus 252 ~~----g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 252 RG----GAALSARHVTGKPIYFAG 271 (425)
T ss_dssp SC----HHHHHHHHHHCCCEEEEE
T ss_pred cH----HHHHHHHHHHCCCEEEEe
Confidence 21 134445566788876665
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.22 E-value=0.00019 Score=50.97 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-++++|++|||||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5799999999999999999764
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.19 E-value=0.00015 Score=56.01 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|++|+|||||+|.+.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 67999999999999999997654
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.17 E-value=0.00023 Score=51.38 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.++|+|++|+|||||++.+.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5799999999999999998763
No 242
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.13 E-value=0.0011 Score=51.22 Aligned_cols=22 Identities=55% Similarity=0.679 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|++|+|||||+|.+. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57899999999999999998 44
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.07 E-value=0.00033 Score=50.51 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4799999999999999999765
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.06 E-value=0.00033 Score=49.99 Aligned_cols=21 Identities=43% Similarity=0.743 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028315 16 ILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~ 36 (210)
++++|+.|+|||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999754
No 245
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.06 E-value=0.00034 Score=49.90 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-.++++|++|+|||||++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999765
No 246
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.99 E-value=0.00045 Score=49.87 Aligned_cols=23 Identities=48% Similarity=0.769 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-|+|+|++|+|||||++.|....
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 57899999999999999997643
No 247
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.98 E-value=0.00043 Score=50.23 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-++++|+.|+|||||++.+.+-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999987654
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.96 E-value=0.00045 Score=50.66 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999987744
No 249
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.96 E-value=0.00047 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-++++|+.|||||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999997754
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.94 E-value=0.00039 Score=48.91 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028315 15 KILLIGDSGVGKSSILLSLI 34 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~ 34 (210)
-++++|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999753
No 251
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.94 E-value=0.0005 Score=49.98 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-|+++|++|+|||||++.|....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999997764
No 252
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.92 E-value=0.00048 Score=50.04 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=21.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.....|+|+|++|+|||||++.+.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999988654
No 253
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.89 E-value=0.00061 Score=48.72 Aligned_cols=21 Identities=43% Similarity=0.743 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028315 16 ILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~ 36 (210)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999754
No 254
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.84 E-value=0.0007 Score=47.39 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.|+++|++|+||||+.+.+...
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998654
No 255
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.81 E-value=0.00081 Score=46.89 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.|++.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998543
No 256
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.81 E-value=0.00074 Score=48.11 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
.++++|++|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 257
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.81 E-value=0.00074 Score=48.83 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-|+|+|++|||||||++.|....
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47999999999999999986543
No 258
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.80 E-value=0.00074 Score=48.68 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-.|+++|++||||||+++.+.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999997654
No 259
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.79 E-value=0.00081 Score=46.76 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999987754
No 260
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.78 E-value=0.00077 Score=47.00 Aligned_cols=19 Identities=42% Similarity=0.525 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 028315 15 KILLIGDSGVGKSSILLSL 33 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l 33 (210)
.|++.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 261
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.77 E-value=0.00096 Score=46.90 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 262
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.77 E-value=0.0008 Score=53.07 Aligned_cols=24 Identities=42% Similarity=0.571 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSV 38 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~ 38 (210)
.++++|++|+|||||++.+.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 579999999999999999987654
No 263
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.77 E-value=0.0025 Score=51.72 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=40.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhh------------------CCCCC----CCCceeeEEEEEEEEE---CCeEEEEEE
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLIS------------------NSVHD----PSPTIGVDFKIKLLTV---GGKRLKLTI 65 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~------------------~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~l 65 (210)
.+..-|+|+|+.++|||+|+|.++. ..|.. ...|.|+-.......+ ++..+.+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 4566678999999999999995541 12222 2234444433222111 566789999
Q ss_pred EeCCCCccc
Q 028315 66 WDTAGQERF 74 (210)
Q Consensus 66 ~Dt~G~~~~ 74 (210)
+||.|....
T Consensus 145 lDTEG~~d~ 153 (457)
T 4ido_A 145 MDTQGTFDS 153 (457)
T ss_dssp EEECCBTCT
T ss_pred EeccCCCCc
Confidence 999995433
No 264
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.76 E-value=0.00076 Score=50.11 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999886543
No 265
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.76 E-value=0.00092 Score=48.46 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.2
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
....|+++|+.|+|||||++.+.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988663
No 266
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.74 E-value=0.00089 Score=48.24 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-.|+++|++|+|||||++.+.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998653
No 267
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.72 E-value=0.00086 Score=47.38 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=20.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.-.++++|++|+|||||++.+.+..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999886543
No 268
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.72 E-value=0.00084 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
+++++|+.|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999988653
No 269
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.72 E-value=0.001 Score=49.61 Aligned_cols=21 Identities=19% Similarity=0.583 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 028315 14 FKILLIGDSGVGKSSILLSLI 34 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~ 34 (210)
-.|+++|++|||||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999987
No 270
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.70 E-value=0.0015 Score=50.62 Aligned_cols=27 Identities=30% Similarity=0.261 Sum_probs=23.0
Q ss_pred CceEEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 10 YDYSFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 10 ~~~~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.....-|+|+|++|+|||||++.+.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 455678999999999999999988664
No 271
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.69 E-value=0.00091 Score=49.27 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999986543
No 272
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.68 E-value=0.0012 Score=46.38 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
-.|+++|++|+||||+.+.+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
No 273
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.68 E-value=0.00092 Score=48.65 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998844
No 274
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.67 E-value=0.0012 Score=47.53 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
-.|+++|++|+||||+.+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999998864
No 275
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.66 E-value=0.00095 Score=48.60 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 276
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.66 E-value=0.0011 Score=49.42 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987653
No 277
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.64 E-value=0.0014 Score=47.34 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999965
No 278
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.64 E-value=0.0011 Score=47.68 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.|+|+|.+|+||||+.+.|...
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988653
No 279
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.64 E-value=0.0012 Score=46.61 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-++++|++|+|||||++++...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4789999999999999999764
No 280
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.63 E-value=0.0016 Score=46.79 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
....|+|.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998864
No 281
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.62 E-value=0.0013 Score=47.33 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
+|+++|.+||||||+.+.|..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 282
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.61 E-value=0.0012 Score=46.42 Aligned_cols=22 Identities=45% Similarity=0.519 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.|++.|++||||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998653
No 283
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.61 E-value=0.0012 Score=49.89 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
=.++++|++|+|||||++.+.+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 35899999999999999998653
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.61 E-value=0.0014 Score=46.56 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 285
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.61 E-value=0.0011 Score=49.97 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999986653
No 286
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.60 E-value=0.0012 Score=48.28 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999986653
No 287
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.60 E-value=0.0012 Score=50.31 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999999986644
No 288
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.60 E-value=0.0013 Score=48.93 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999986653
No 289
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.60 E-value=0.0087 Score=40.64 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSV 38 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~ 38 (210)
..|++.|++|+|||++.+.+.....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCC
Confidence 4589999999999999999866543
No 290
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.60 E-value=0.0013 Score=50.74 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++|+|++|+|||||++.+.+-.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 68999999999999999987643
No 291
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.58 E-value=0.0015 Score=47.89 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
.+|+++|++|+||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 292
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.58 E-value=0.0015 Score=46.87 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998865
No 293
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.58 E-value=0.0019 Score=45.81 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=21.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.....|++.|.+|+||||+.+.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34577999999999999999988543
No 294
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.57 E-value=0.0014 Score=48.90 Aligned_cols=23 Identities=39% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999986653
No 295
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.57 E-value=0.0018 Score=45.84 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhh
Q 028315 13 SFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
...|+++|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998853
No 296
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.57 E-value=0.0019 Score=46.72 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.....|+++|.+|+||||+.+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44577999999999999999998664
No 297
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.56 E-value=0.0014 Score=49.04 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999986653
No 298
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.55 E-value=0.0013 Score=49.53 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999986654
No 299
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.55 E-value=0.0013 Score=47.27 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=21.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
.....|+|.|.+|+||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998854
No 300
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.55 E-value=0.0016 Score=48.54 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
...+|+++|++||||||+.++|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999854
No 301
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.54 E-value=0.0013 Score=49.82 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46899999999999999997653
No 302
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.53 E-value=0.0015 Score=48.21 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999986653
No 303
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.53 E-value=0.0016 Score=46.13 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
.+|+++|++|+||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998854
No 304
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.53 E-value=0.0016 Score=50.14 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSV 38 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~ 38 (210)
.++++|++|+|||||++.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999976544
No 305
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.52 E-value=0.0014 Score=49.52 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 46899999999999999986653
No 306
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.52 E-value=0.0015 Score=46.99 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 13 SFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.-.|+++|++|+||||+.+.+.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988554
No 307
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.51 E-value=0.0017 Score=46.22 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..|++.|.+|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999854
No 308
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.51 E-value=0.0012 Score=47.98 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999775
No 309
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.51 E-value=0.0015 Score=49.21 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999986653
No 310
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.50 E-value=0.0015 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999986653
No 311
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.49 E-value=0.0016 Score=47.71 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-++++|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999764
No 312
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.49 E-value=0.0016 Score=48.83 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999775
No 313
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.49 E-value=0.0017 Score=45.99 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
No 314
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.49 E-value=0.00091 Score=49.32 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=14.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh-hC
Q 028315 15 KILLIGDSGVGKSSILLSLI-SN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~-~~ 36 (210)
-++++|+.|||||||++.+. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999997 54
No 315
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.49 E-value=0.0016 Score=49.04 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999764
No 316
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.49 E-value=0.0016 Score=48.29 Aligned_cols=20 Identities=35% Similarity=0.717 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028315 15 KILLIGDSGVGKSSILLSLI 34 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~ 34 (210)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999886
No 317
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.48 E-value=0.0019 Score=45.86 Aligned_cols=23 Identities=17% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhh
Q 028315 13 SFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 318
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.48 E-value=0.0013 Score=46.37 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhh
Q 028315 13 SFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
...|+++|.+|+||||+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45689999999999999998853
No 319
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.48 E-value=0.0017 Score=48.59 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999986653
No 320
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.47 E-value=0.0019 Score=46.92 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
+|+|+|+|||||+|...++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 321
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.46 E-value=0.0019 Score=48.87 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999775
No 322
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.45 E-value=0.0018 Score=49.35 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999986654
No 323
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.44 E-value=0.00099 Score=46.97 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++|+|++|+|||||++.+.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999986643
No 324
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.44 E-value=0.0018 Score=49.13 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999986653
No 325
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.43 E-value=0.002 Score=47.99 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
....|+++|+.|+|||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998866
No 326
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.42 E-value=0.0021 Score=46.77 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 327
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.41 E-value=0.0018 Score=48.64 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999986654
No 328
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.41 E-value=0.0021 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=20.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 13 SFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
..+|+++|.+|+||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999988654
No 329
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.39 E-value=0.0018 Score=48.96 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999986653
No 330
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.39 E-value=0.0023 Score=44.99 Aligned_cols=23 Identities=39% Similarity=0.640 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999988654
No 331
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.39 E-value=0.0019 Score=47.73 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
...+|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998854
No 332
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.38 E-value=0.0019 Score=45.35 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
+|+++|++|+||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 333
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.38 E-value=0.0024 Score=46.03 Aligned_cols=22 Identities=36% Similarity=0.291 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 334
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.36 E-value=0.0021 Score=48.87 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028315 16 ILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~ 36 (210)
++++|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999764
No 335
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.35 E-value=0.0024 Score=50.57 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.-+++|+|++|+|||||++.+.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987653
No 336
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.35 E-value=0.0033 Score=48.88 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..++-|+|+|++|||||||++.+.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998854
No 337
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.35 E-value=0.0023 Score=48.36 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999997654
No 338
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.34 E-value=0.0018 Score=47.55 Aligned_cols=22 Identities=18% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..|+|.|.+||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998853
No 339
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.34 E-value=0.0025 Score=44.27 Aligned_cols=21 Identities=38% Similarity=0.357 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998855
No 340
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.32 E-value=0.0017 Score=44.57 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|++|+|||+|++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999987643
No 341
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.30 E-value=0.0062 Score=41.29 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..|++.|++|+|||++.+.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 3589999999999999988743
No 342
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.30 E-value=0.0024 Score=48.87 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.1
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
....|++.|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999964
No 343
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.30 E-value=0.0024 Score=47.67 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028315 16 ILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~ 37 (210)
++++|++|+|||||++.+.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999997643
No 344
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.30 E-value=0.0033 Score=46.02 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
-|+++|+|||||+|...+|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367789999999999988854
No 345
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.30 E-value=0.0028 Score=46.29 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
.+|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 346
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.30 E-value=0.0025 Score=50.30 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.++|+|++|+|||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999988653
No 347
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.29 E-value=0.0027 Score=44.57 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.++++|.+|+|||||+.++...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999998653
No 348
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.29 E-value=0.003 Score=48.78 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.....|+|+|+.|+|||||++.+.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999988663
No 349
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.28 E-value=0.004 Score=47.41 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=21.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLI 34 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~ 34 (210)
...+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999886
No 350
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.28 E-value=0.0026 Score=47.57 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
...+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998854
No 351
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.27 E-value=0.0017 Score=50.15 Aligned_cols=23 Identities=43% Similarity=0.589 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 57999999999999999886543
No 352
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.26 E-value=0.003 Score=45.54 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=21.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
.....|+++|.+|+|||||++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 353
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.24 E-value=0.0025 Score=46.78 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 354
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.23 E-value=0.0033 Score=48.14 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=21.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
.....|+|.|++|+|||||.+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988743
No 355
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.23 E-value=0.0025 Score=50.23 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSV 38 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~ 38 (210)
-++++|+.|+|||||++.+.+-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 368999999999999999976543
No 356
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.22 E-value=0.0024 Score=47.86 Aligned_cols=25 Identities=36% Similarity=0.411 Sum_probs=21.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
.....|+++|++|+||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999854
No 357
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.22 E-value=0.0027 Score=48.98 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=46.0
Q ss_pred EEEEEeCCCCccccc-c-----------hhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028315 62 KLTIWDTAGQERFGT-L-----------TSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKV 129 (210)
Q Consensus 62 ~~~l~Dt~G~~~~~~-~-----------~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (210)
.+.++||+|...... . .+......+.+++++|+............+.... + ..++++||.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~-------~-~t~iivTh~ 257 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-------G-LTGVIVTKL 257 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-------C-CSEEEEECT
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHc-------C-CcEEEEECC
Confidence 456789999533211 1 1112345788899999887654332221111111 2 247889999
Q ss_pred CCCCCCccCHHHHHHHHHHcCCeEEEecc
Q 028315 130 DRDSERAVTREEGMILAQEHKCLFLECSA 158 (210)
Q Consensus 130 Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa 158 (210)
|..... -.+.......+.|+.++..
T Consensus 258 d~~a~g----g~~l~i~~~~~~pi~~ig~ 282 (304)
T 1rj9_A 258 DGTAKG----GVLIPIVRTLKVPIKFVGV 282 (304)
T ss_dssp TSSCCC----TTHHHHHHHHCCCEEEEEC
T ss_pred cccccc----cHHHHHHHHHCCCeEEEeC
Confidence 864221 1234555667888766653
No 358
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.21 E-value=0.0025 Score=46.51 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhh
Q 028315 13 SFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..+|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998854
No 359
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.21 E-value=0.0035 Score=44.97 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
..|++.|.+||||||+.+.|....
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 568999999999999999996653
No 360
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.21 E-value=0.0034 Score=44.94 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
+...|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3478999999999999999998765
No 361
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.20 E-value=0.0028 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-++++|+.|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 36899999999999999986654
No 362
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.20 E-value=0.0029 Score=48.49 Aligned_cols=22 Identities=27% Similarity=0.668 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998664
No 363
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.19 E-value=0.0029 Score=45.66 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=20.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhh
Q 028315 13 SFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 364
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.18 E-value=0.003 Score=47.32 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
.|+|+|++|+|||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999854
No 365
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.18 E-value=0.0032 Score=44.81 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..|++.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998853
No 366
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.16 E-value=0.0031 Score=50.06 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
=.++++|++|+|||||++.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999998653
No 367
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.16 E-value=0.0031 Score=48.64 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..--++++|+.|+||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345689999999999999999854
No 368
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.16 E-value=0.0033 Score=44.83 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998653
No 369
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.16 E-value=0.0036 Score=44.67 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..|++.|.+|+||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 370
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.15 E-value=0.0034 Score=44.56 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 371
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.15 E-value=0.0031 Score=49.74 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999987654
No 372
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.14 E-value=0.0036 Score=43.52 Aligned_cols=21 Identities=43% Similarity=0.498 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
+|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 373
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.13 E-value=0.0027 Score=44.52 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999988654
No 374
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.12 E-value=0.0014 Score=47.50 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999854
No 375
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.11 E-value=0.0032 Score=49.68 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 36899999999999999987654
No 376
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.11 E-value=0.0031 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|++|+|||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999987654
No 377
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.11 E-value=0.0033 Score=49.12 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|++|+|||||++.+.+..
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 47999999999999999987643
No 378
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.10 E-value=0.0031 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|++|+|||||++.+.+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999997643
No 379
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.10 E-value=0.0034 Score=49.64 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999987654
No 380
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.10 E-value=0.0034 Score=49.93 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 36899999999999999997654
No 381
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.09 E-value=0.0035 Score=45.79 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
No 382
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.09 E-value=0.0036 Score=43.64 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 383
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.09 E-value=0.0039 Score=45.40 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhh
Q 028315 13 SFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999865
No 384
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.08 E-value=0.0036 Score=47.44 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028315 16 ILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~ 37 (210)
++++|++|+|||||++.+.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8999999999999999987643
No 385
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.07 E-value=0.0042 Score=43.97 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998854
No 386
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.06 E-value=0.0038 Score=45.62 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-++++|++|+|||||+..+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999998743
No 387
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.05 E-value=0.0039 Score=45.07 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhh
Q 028315 13 SFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 388
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.05 E-value=0.0037 Score=49.60 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999987653
No 389
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.05 E-value=0.0036 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 36899999999999999987654
No 390
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.05 E-value=0.004 Score=46.60 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 028315 14 FKILLIGDSGVGKSSILLSLI 34 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~ 34 (210)
..|+|+|++|+||||+.+.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999886
No 391
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.03 E-value=0.0045 Score=46.54 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 392
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.02 E-value=0.0044 Score=45.41 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-.+++.|++|+|||+|++.+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988643
No 393
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.02 E-value=0.0039 Score=44.03 Aligned_cols=21 Identities=43% Similarity=0.539 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
.|+++|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998854
No 394
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.01 E-value=0.0049 Score=43.37 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..|+++|.+|+||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998865
No 395
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.01 E-value=0.0038 Score=50.36 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++|+|++|+|||||++.+++..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999987643
No 396
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.98 E-value=0.0049 Score=44.22 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-.+++.|++|+|||+|+..+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999886543
No 397
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.98 E-value=0.0048 Score=46.12 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-.+++.|++|+|||+|++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999998654
No 398
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.96 E-value=0.0031 Score=44.40 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=15.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999854
No 399
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.96 E-value=0.004 Score=51.53 Aligned_cols=23 Identities=17% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++|+|++|||||||++.+++..
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999997644
No 400
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.94 E-value=0.0061 Score=43.71 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
..+.|+++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4788999999999999999988553
No 401
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.92 E-value=0.0031 Score=49.59 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 46899999999999999987654
No 402
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.90 E-value=0.0046 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-++++|++|+|||||+..+.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999886543
No 403
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.88 E-value=0.0036 Score=46.10 Aligned_cols=25 Identities=28% Similarity=0.487 Sum_probs=21.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
...-|+|.|+.|+|||||++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3467899999999999999998665
No 404
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.88 E-value=0.0077 Score=44.40 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
....|+|.|.+|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998654
No 405
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.87 E-value=0.0047 Score=49.33 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.++++|+.|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999998764
No 406
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.87 E-value=0.005 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..-.++++|+.|+||||+++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345689999999999999999864
No 407
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.014 Score=42.90 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=21.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.+.+-|++-|.++.|||.|++++++..
T Consensus 27 ~nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 27 QNKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CCceEEEecCcccccHHHHHHHHhccc
Confidence 455666666999999999999998774
No 408
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.80 E-value=0.0049 Score=46.14 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
+|+++|++|+||||+.+.+..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 409
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.80 E-value=0.0054 Score=50.36 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=19.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhh
Q 028315 13 SFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
.-.++|+|+.|+|||||++.+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 45689999999999999999854
No 410
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.79 E-value=0.0039 Score=48.41 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-++++|+.|+|||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46889999999999999998754
No 411
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.79 E-value=0.0059 Score=44.97 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999774
No 412
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.79 E-value=0.0059 Score=44.23 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 413
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.77 E-value=0.0063 Score=47.85 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998764
No 414
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.76 E-value=0.0062 Score=44.12 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhh
Q 028315 13 SFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
...|++.|.+|+||||+.+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998754
No 415
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.75 E-value=0.0073 Score=46.23 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=21.1
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.+.-+++.|+||+|||+|.+.+....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567888999999999999986543
No 416
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.74 E-value=0.0065 Score=42.76 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999854
No 417
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.73 E-value=0.0031 Score=49.74 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999987654
No 418
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.71 E-value=0.0056 Score=45.32 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhh
Q 028315 13 SFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
.+.|++.|++|+||||+.+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998853
No 419
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.0051 Score=50.23 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.++|+|+.|+|||||++.+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998764
No 420
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.69 E-value=0.0057 Score=44.31 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.+++.|+||+|||+++..+...
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999998887553
No 421
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.66 E-value=0.007 Score=44.14 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.+++.|++|+|||+|++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988643
No 422
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.65 E-value=0.0074 Score=45.72 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-.+++.|++|+|||+|++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999654
No 423
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.65 E-value=0.0072 Score=43.50 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028315 16 ILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~ 36 (210)
+++.|++|+|||+|++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988653
No 424
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.63 E-value=0.037 Score=39.46 Aligned_cols=86 Identities=9% Similarity=-0.048 Sum_probs=53.4
Q ss_pred EEEEEEeCCCCcccccchhhhhccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCCccCH
Q 028315 61 LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSSVWAKEVELYST-NQDCVKILVGNKVDRDSERAVTR 139 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~ 139 (210)
+.+.++|+|+.. .......+..+|.+++++..+... .... .+...+..... ..+.++.+|+|+.|... .. .
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~~-~ 147 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAA-GSVVTVLEAQAYSRKVEARFLITRKIEMA--TM-L 147 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHH-HHHHHHHTTSCGGGCCEEEEEECSBCTTE--EE-E
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHH-HHHHHHHHHHHhCCCCcEEEEEeccCCCc--hH-H
Confidence 678899999865 344456677899999999877554 4444 44455543321 23567789999998532 12 2
Q ss_pred HHHHHHHHHcCCeEE
Q 028315 140 EEGMILAQEHKCLFL 154 (210)
Q Consensus 140 ~~~~~~~~~~~~~~~ 154 (210)
.+..+....++.+++
T Consensus 148 ~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 148 NVLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHcCCcee
Confidence 234444444565554
No 425
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.63 E-value=0.0075 Score=46.00 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-.+++.|++|+|||+|++.+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999998664
No 426
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.61 E-value=0.0068 Score=46.36 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..|++.|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 427
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.60 E-value=0.0083 Score=44.71 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-.+++.|++|+|||+|++.+...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999998653
No 428
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.55 E-value=0.0076 Score=47.90 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3679999999999999999875
No 429
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.55 E-value=0.0086 Score=45.89 Aligned_cols=24 Identities=21% Similarity=0.553 Sum_probs=19.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
....+++.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999986643
No 430
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.51 E-value=0.0086 Score=44.18 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=19.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 12 YSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
...+++++|+|||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357899999999999999998854
No 431
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.46 E-value=0.013 Score=44.12 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
...-.+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999998664
No 432
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.44 E-value=0.0096 Score=45.71 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-.|++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999998764
No 433
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.39 E-value=0.0092 Score=46.18 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.+++.|++|+|||+|++.+...
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998653
No 434
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.37 E-value=0.01 Score=48.14 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
+++++|+.|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999987764
No 435
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.33 E-value=0.01 Score=44.98 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 436
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.31 E-value=0.01 Score=48.67 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
.++++|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998864
No 437
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.31 E-value=0.011 Score=45.28 Aligned_cols=86 Identities=15% Similarity=0.076 Sum_probs=47.4
Q ss_pred EEEEEEEeCCCCccccc-chh---hhhc--cccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028315 60 RLKLTIWDTAGQERFGT-LTS---SYYR--GAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNKVDRDS 133 (210)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~-~~~---~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 133 (210)
.+.+.++||+|...... ... ..+. ..+.+++|+|++... ..+. .+...+. ..+ ..-+|+||.|...
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~--~~~~-~~~~~~~----~l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY--EDMK-HIVKRFS----SVP-VNQYIFTKIDETT 253 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH--HHHH-HHTTTTS----SSC-CCEEEEECTTTCS
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH--HHHH-HHHHHHh----cCC-CCEEEEeCCCccc
Confidence 35788999999654432 111 2222 367889999877542 2222 2222221 112 2346679999753
Q ss_pred CCccCHHHHHHHHHHcCCeEEEec
Q 028315 134 ERAVTREEGMILAQEHKCLFLECS 157 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~s 157 (210)
.. ..+.......+.++..+.
T Consensus 254 ~~----g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 254 SL----GSVFNILAESKIGVGFMT 273 (296)
T ss_dssp CC----HHHHHHHHTCSCCCSEEC
T ss_pred ch----hHHHHHHHHHCcCEEEEE
Confidence 21 245566667788865554
No 438
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.28 E-value=0.013 Score=42.05 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 439
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.28 E-value=0.011 Score=45.14 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-.+++.|++|+|||++++.+...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998653
No 440
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.26 E-value=0.012 Score=49.16 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999997754
No 441
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.25 E-value=0.011 Score=46.53 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-.++|.|++|+|||+|++.+...
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36799999999999999998653
No 442
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.24 E-value=0.011 Score=43.66 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
.....|+++|.+|+||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 443
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.23 E-value=0.011 Score=49.82 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 57999999999999999986643
No 444
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.22 E-value=0.013 Score=40.04 Aligned_cols=19 Identities=47% Similarity=0.802 Sum_probs=16.7
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 028315 16 ILLIGDSGVGKSSILLSLI 34 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~ 34 (210)
.+|+|+.|+|||+|+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3688999999999999874
No 445
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.22 E-value=0.011 Score=42.56 Aligned_cols=24 Identities=46% Similarity=0.782 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
..|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999996654
No 446
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.21 E-value=0.011 Score=47.61 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 13 SFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
..-|+++|.+|+||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 345889999999999999998653
No 447
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.20 E-value=0.013 Score=44.89 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-.+++.|++|+|||++++.+....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 468999999999999999886543
No 448
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.20 E-value=0.013 Score=46.28 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++|.|++|+|||+|++.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999986543
No 449
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.16 E-value=0.013 Score=43.23 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028315 15 KILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~ 35 (210)
-++++|++|+|||+|+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999877754
No 450
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.14 E-value=0.076 Score=40.90 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028315 16 ILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~ 37 (210)
+++-|++|+|||++++.+....
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHT
T ss_pred EEeeCcCCCCHHHHHHHHHHHh
Confidence 4666779999999999986543
No 451
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.13 E-value=0.01 Score=46.40 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028315 16 ILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~ 36 (210)
+++.|++|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988763
No 452
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.12 E-value=0.012 Score=45.82 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028315 16 ILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~ 37 (210)
++|.|++|+||||+++.+...-
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999986643
No 453
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.09 E-value=0.014 Score=45.19 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 13 SFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.-.|++.|++|+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457899999999999999998654
No 454
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.08 E-value=0.014 Score=45.04 Aligned_cols=87 Identities=18% Similarity=0.121 Sum_probs=47.6
Q ss_pred EEEEEEeCCCCccccc-ch------hhhh-----ccccEEEEEEeCCCHhhHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028315 61 LKLTIWDTAGQERFGT-LT------SSYY-----RGAHGIILVYDVTRRETFTNLSSVWAKEVELYSTNQDCVKILVGNK 128 (210)
Q Consensus 61 ~~~~l~Dt~G~~~~~~-~~------~~~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (210)
+.+.++||||...... .+ ...+ ..++.+++|+|+.... +.+. .... +... .+. .-+|+||
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~-~a~~-~~~~---~~i-~gvVlTk 258 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLV-QAKI-FKEA---VNV-TGIILTK 258 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHH-HHHH-HHHH---SCC-CEEEEEC
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHH-HHHH-HHhc---CCC-CEEEEeC
Confidence 4588899999532211 11 1111 2478899999987442 2222 2211 1111 122 3467899
Q ss_pred CCCCCCCccCHHHHHHHHHHcCCeEEEeccc
Q 028315 129 VDRDSERAVTREEGMILAQEHKCLFLECSAK 159 (210)
Q Consensus 129 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 159 (210)
.|.... . -.+.......+.|+.++..-
T Consensus 259 ~D~~~~--g--G~~l~~~~~~~~Pi~~i~~G 285 (306)
T 1vma_A 259 LDGTAK--G--GITLAIARELGIPIKFIGVG 285 (306)
T ss_dssp GGGCSC--T--THHHHHHHHHCCCEEEEECS
T ss_pred CCCccc--h--HHHHHHHHHHCCCEEEEeCC
Confidence 996322 1 23566777788887777543
No 455
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.05 E-value=0.015 Score=44.81 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhh
Q 028315 13 SFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998854
No 456
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.03 E-value=0.015 Score=45.10 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-.|++.|++|+|||+|++.+....
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 468999999999999999997643
No 457
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.01 E-value=0.017 Score=48.65 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999986654
No 458
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.014 Score=49.39 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 47999999999999999997654
No 459
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.98 E-value=0.017 Score=48.11 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
-++++|+.|+|||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999997754
No 460
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.97 E-value=0.017 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
..|+|+|++|+|||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988643
No 461
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.96 E-value=0.016 Score=45.54 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-.++|.|++|+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998654
No 462
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.015 Score=46.94 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
--|++.|+||+|||+|++.+.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999654
No 463
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.93 E-value=0.02 Score=42.06 Aligned_cols=25 Identities=28% Similarity=0.201 Sum_probs=21.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~~ 35 (210)
.+..-|+|.|.+|+||||+++.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457799999999999999998754
No 464
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.90 E-value=0.016 Score=45.18 Aligned_cols=21 Identities=38% Similarity=0.729 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028315 16 ILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~ 36 (210)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988654
No 465
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.88 E-value=0.016 Score=45.82 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=17.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHh
Q 028315 13 SFKILLIGDSGVGKSSILLSLI 34 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~ 34 (210)
.+ .+|+|+.|+|||||++.++
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 35 4589999999999999875
No 466
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.016 Score=46.82 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 13 SFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
+-.|++.|+||+|||.|++.+.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 456899999999999999999664
No 467
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.87 E-value=0.017 Score=45.18 Aligned_cols=22 Identities=23% Similarity=0.604 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028315 14 FKILLIGDSGVGKSSILLSLIS 35 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~ 35 (210)
..|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998854
No 468
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.87 E-value=0.021 Score=44.89 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHh
Q 028315 13 SFKILLIGDSGVGKSSILLSLI 34 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~ 34 (210)
..+|+++|++|+||||+.+.+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 3579999999999999998764
No 469
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.87 E-value=0.034 Score=41.60 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNSV 38 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~~ 38 (210)
..|++.|++|+|||+|++.+.....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4689999999999999999866543
No 470
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.86 E-value=0.014 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-.+++.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998653
No 471
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.84 E-value=0.017 Score=48.92 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57999999999999999997654
No 472
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.84 E-value=0.02 Score=42.30 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
..|++.|..|+||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999998654
No 473
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.83 E-value=0.0075 Score=45.27 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028315 16 ILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~ 36 (210)
+++.|++|+|||+|++.+...
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999998653
No 474
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.82 E-value=0.018 Score=47.98 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSV 38 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~ 38 (210)
.++++|+.|+|||||++.+.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999977543
No 475
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.82 E-value=0.016 Score=48.36 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSV 38 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~ 38 (210)
.++++|+.|+|||||++.+.+-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999976543
No 476
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.82 E-value=0.011 Score=49.80 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 57999999999999999986643
No 477
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=94.82 E-value=0.019 Score=45.96 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHh
Q 028315 11 DYSFKILLIGDSGVGKSSILLSLI 34 (210)
Q Consensus 11 ~~~~~i~i~G~~~~GKSsli~~l~ 34 (210)
.+++|++++|...+||||++..+.
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 468999999999999999999863
No 478
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.013 Score=45.38 Aligned_cols=25 Identities=4% Similarity=0.050 Sum_probs=20.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 13 SFKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.-++.+.|+||+|||++++.+....
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3577999999999999999986543
No 479
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.82 E-value=0.019 Score=44.32 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-|+|+|++|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999654
No 480
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.81 E-value=0.015 Score=47.60 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
+++++|+||+|||++++.+...
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999999988554
No 481
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.81 E-value=0.017 Score=45.39 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
--+.|+|++|+|||||+..+....
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999997653
No 482
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.80 E-value=0.019 Score=44.81 Aligned_cols=22 Identities=32% Similarity=0.677 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.|+|+|++|+|||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998654
No 483
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.79 E-value=0.012 Score=44.13 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=21.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 12 YSFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 12 ~~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
+...|+|.|..|+||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999988543
No 484
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.018 Score=46.64 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 13 SFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
+--|++.|+||+|||+|++.+.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999999654
No 485
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.75 E-value=0.017 Score=48.87 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 67999999999999999886543
No 486
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.71 E-value=0.02 Score=48.44 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNSV 38 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~~ 38 (210)
.++++|+.|+|||||++.+.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999977543
No 487
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.68 E-value=0.026 Score=39.68 Aligned_cols=35 Identities=3% Similarity=-0.114 Sum_probs=24.8
Q ss_pred CCeEEEecccCCcCHHHHHHHHHHHHHccchhhhc
Q 028315 150 KCLFLECSAKNTEDVKQCFKDLLYKILEVPSLLEQ 184 (210)
Q Consensus 150 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~ 184 (210)
.+|.+.+....|.|+.-+.+........+...+..
T Consensus 127 ~iP~i~iPv~~GRn~a~iiE~Aa~n~~lk~~G~~~ 161 (181)
T 3tqf_A 127 NVPKILFPIHPGRNLPLLIETLVRNHRLKMEGYDS 161 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccEEEeccCCCCcHHHHHHHHHHHHHHHHhCCcH
Confidence 34688889999999988888777655544444443
No 488
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.68 E-value=0.02 Score=44.51 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.|++.|++|+|||+|++.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999998554
No 489
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.67 E-value=0.014 Score=49.04 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.++++|+.|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999977554
No 490
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.67 E-value=0.022 Score=40.29 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028315 16 ILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~ 36 (210)
++|+|.+++|||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999754
No 491
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.66 E-value=0.02 Score=45.08 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-.|++.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998654
No 492
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.64 E-value=0.022 Score=44.91 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.+++.|++|+|||+|++.+...
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998653
No 493
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.63 E-value=0.014 Score=49.19 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028315 15 KILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57999999999999999885543
No 494
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.62 E-value=0.023 Score=44.77 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhhC
Q 028315 13 SFKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 13 ~~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.-.|++.|++|+|||+|++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998654
No 495
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.021 Score=45.70 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
-.|++.|+||+|||.|++.+.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 46899999999999999999654
No 496
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.58 E-value=0.021 Score=45.12 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028315 14 FKILLIGDSGVGKSSILLSLISNS 37 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~~ 37 (210)
..+++.|++|+|||++.+.+....
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999986543
No 497
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.021 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCC
Q 028315 16 ILLIGDSGVGKSSILLSLISNSV 38 (210)
Q Consensus 16 i~i~G~~~~GKSsli~~l~~~~~ 38 (210)
++++|+.|+|||||++.+.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999977543
No 498
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.54 E-value=0.024 Score=43.74 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028315 14 FKILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 14 ~~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.-|+|+|++|||||+|...+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 35789999999999999998643
No 499
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.52 E-value=0.021 Score=46.31 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.+++.|++|+|||+|++.+.+.
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999988653
No 500
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.51 E-value=0.023 Score=47.42 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028315 15 KILLIGDSGVGKSSILLSLISN 36 (210)
Q Consensus 15 ~i~i~G~~~~GKSsli~~l~~~ 36 (210)
.++++|++|+|||||++.+.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999988553
Done!