BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028316
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 149
+DP+ E L G + + D ++A ++ ALEL DP +A LG + +
Sbjct: 30 LDPRSAEAWYNL--GNAYYKQGDYDEAIEYYQKALEL-----DP-RSAEAWYNLGNAYYK 81
Query: 150 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
QG Y EAI+Y+ L++ R S EA+ + + Y + GD + A +Y K
Sbjct: 82 QGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQK 128
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
G + + D ++A ++ ALEL DP +A LG + +QG Y EAI+Y+
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALEL-----DP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
L++ R S EA+ + + Y + GD + A +Y K
Sbjct: 62 LELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQK 94
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 149
+DP+ E L G + + D ++A ++ ALEL DP +A LG + +
Sbjct: 64 LDPRSAEAWYNL--GNAYYKQGDYDEAIEYYQKALEL-----DP-RSAEAWYNLGNAYYK 115
Query: 150 QGKYREAIKYHSMVLQISER 169
QG Y EAI+Y+ L++ R
Sbjct: 116 QGDYDEAIEYYQKALELDPR 135
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 138 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 197
+A LG + +QG Y EAI+Y+ L++ R S EA+ + + Y + GD + A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAI 55
Query: 198 RFYDK 202
+Y K
Sbjct: 56 EYYQK 60
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
G + + D ++A ++ ALEL N +A LG + +QG Y EAI+Y+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
L++ Y + EA+ + + Y + GD + A +Y K
Sbjct: 70 LEL------YPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 132 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 191
DP +A LG + +QG Y EAI+Y+ L++ Y + EA+ + + Y + G
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------YPNNAEAWYNLGNAYYKQG 57
Query: 192 DLERAARFYDK 202
D + A +Y K
Sbjct: 58 DYDEAIEYYQK 68
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG 151
P E L G + + D ++A ++ ALEL N +A LG + +QG
Sbjct: 40 PNNAEAWYNL--GNAYYKQGDYDEAIEYYQKALELYPN------NAEAWYNLGNAYYKQG 91
Query: 152 KYREAIKYHSMVLQISEREGE 172
Y EAI+Y+ L++ E
Sbjct: 92 DYDEAIEYYQKALELYPNNAE 112
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
G ++ + E A +K L LA+ +KD E ++ LG + Y +AI YH
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293
Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
L I++ + G A ++ + YT LG+ ++A F +K++
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
G + QD EKA L +AQ + D I E +A LG + G + +A+ +
Sbjct: 274 GNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333
Query: 164 LQISEREGEYSGSTEAYGAIADCYTELG 191
L+IS G+ SG A ++D LG
Sbjct: 334 LEISREVGDKSGELTARLNLSDLQMVLG 361
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 113 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172
L+ A ++ L L + D + +A LG + G +R+A+ H L I++ G+
Sbjct: 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 222
Query: 173 YSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
+ AY + + Y LG+ E A+ +Y K +
Sbjct: 223 KAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 43/82 (52%)
Query: 124 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 183
L +A+ D E++A LG + G++ A +Y+ L ++ + + + ++ ++
Sbjct: 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 273
Query: 184 ADCYTELGDLERAARFYDKYIS 205
+ YT L D E+A ++ K+++
Sbjct: 274 GNTYTLLQDYEKAIDYHLKHLA 295
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
G + + D ++A ++ ALEL DP +A LG + +QG Y EAI+Y+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALEL-----DP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
L++ + EA+ + + Y + GD + A +Y K
Sbjct: 70 LELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQK 102
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 132 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 191
DP +A LG + +QG Y EAI+Y+ L++ + EA+ + + Y + G
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQG 57
Query: 192 DLERAARFYDK 202
D + A +Y K
Sbjct: 58 DYDEAIEYYQK 68
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 149
+DP E L G + + D ++A ++ ALEL DP +A LG + +
Sbjct: 38 LDPNNAEAWYNL--GNAYYKQGDYDEAIEYYQKALEL-----DP-NNAEAWYNLGNAYYK 89
Query: 150 QGKYREAIKYHSMVLQISEREGE 172
QG Y EAI+Y+ L++ E
Sbjct: 90 QGDYDEAIEYYQKALELDPNNAE 112
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
G ++ + E A +K L LA+ +KD E ++ LG + Y +AI YH
Sbjct: 232 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 291
Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
L I++ + G A ++ + YT LG+ ++A F +K++
Sbjct: 292 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 332
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 113 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172
L+ A ++ L L + D + +A LG + G +R+A+ H L I++ G+
Sbjct: 161 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 220
Query: 173 YSGSTEAYGAIADCYTELGDLERAARFYDK 202
+ AY + + Y LG+ E A+ +Y K
Sbjct: 221 KAAERRAYSNLGNAYIFLGEFETASEYYKK 250
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
G + QD EKA L +AQ +KD I E +A LG + G + +A+ +
Sbjct: 272 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 331
Query: 164 LQISEREGE 172
L+IS G+
Sbjct: 332 LEISREVGD 340
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 43/82 (52%)
Query: 124 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 183
L +A+ D E++A LG + G++ A +Y+ L ++ + + + ++ ++
Sbjct: 212 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 271
Query: 184 ADCYTELGDLERAARFYDKYIS 205
+ YT L D E+A ++ K+++
Sbjct: 272 GNTYTLLQDYEKAIDYHLKHLA 293
>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX
Length = 164
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%)
Query: 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK 152
K E ++ G ++ + E A +K L LA+ +KD E ++ LG +
Sbjct: 45 KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 104
Query: 153 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
Y +AI YH L I++ + G A ++ + YT LG+ ++A F +K++
Sbjct: 105 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
G + QD EKA L +AQ +KD I E +A LG + G + +A+ +
Sbjct: 96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155
Query: 164 LQISEREGE 172
L+IS G+
Sbjct: 156 LEISREVGD 164
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER 195
+ +A LG + G +R+A+ H L I++ G+ + AY + + Y LG+ E
Sbjct: 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFET 67
Query: 196 AARFYDK 202
A+ +Y K
Sbjct: 68 ASEYYKK 74
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
G ++ + E A +K L LA+ +KD E ++ LG + Y +AI YH
Sbjct: 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289
Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
L I++ + G A ++ + YT LG+ ++A F +K++
Sbjct: 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 113 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172
L+ A ++ L L + D + +A LG + G +R+A+ H L I++ G+
Sbjct: 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218
Query: 173 YSGSTEAYGAIADCYTELGDLERAARFYDK 202
+ AY + + Y LG+ E A+ +Y K
Sbjct: 219 KAAERRAYSNLGNAYIFLGEFETASEYYKK 248
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
G + QD EKA L +AQ +KD I E +A LG + G + +A+ +
Sbjct: 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329
Query: 164 LQISEREGE 172
L+IS G+
Sbjct: 330 LEISREVGD 338
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 43/82 (52%)
Query: 124 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 183
L +A+ D E++A LG + G++ A +Y+ L ++ + + + ++ ++
Sbjct: 210 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 269
Query: 184 ADCYTELGDLERAARFYDKYIS 205
+ YT L D E+A ++ K+++
Sbjct: 270 GNTYTLLQDYEKAIDYHLKHLA 291
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 132 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 191
DP +A LG + +QG Y EAI+Y+ L++ + EA+ + + Y + G
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQG 57
Query: 192 DLERAARFYDK 202
D + A +Y K
Sbjct: 58 DYDEAIEYYQK 68
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
G + + D ++A ++ ALEL DP +A LG + +QG Y EAI+Y+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALEL-----DP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 164 LQISEREGE 172
L++ E
Sbjct: 70 LELDPNNAE 78
>pdb|3ULQ|A Chain A, Crystal Structure Of The Anti-Activator Rapf Complexed
With The Response Regulator Coma Dna Binding Domain
Length = 383
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%)
Query: 106 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 165
NFL + E A + F+ A +A+ K P + +G Q +Y +AI Y +
Sbjct: 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252
Query: 166 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
+ E +AY I + +LG +++A ++ K
Sbjct: 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 132 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 191
DP +A + LG + +QG Y++AI+Y+ L++ + A+ + + Y + G
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN------NASAWYNLGNAYYKQG 57
Query: 192 DLERAARFYDK 202
D ++A +Y K
Sbjct: 58 DYQKAIEYYQK 68
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
G + + D +KA ++ ALEL DP A LG + +QG Y++AI+Y+
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALEL-----DP-NNASAWYNLGNAYYKQGDYQKAIEYYQKA 69
Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
L++ + +A+ + Y + GD ++A Y K
Sbjct: 70 LELDPN------NAKAWYRRGNAYYKQGDYQKAIEDYQK 102
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 149
+DP + R G + + D +KA +++ ALEL DP KA + LG + Q+
Sbjct: 72 LDPNNAKAWYR--RGNAYYKQGDYQKAIEDYQKALEL-----DP-NNAKAKQNLGNAKQK 123
Query: 150 QG 151
QG
Sbjct: 124 QG 125
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 138 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 197
+A LG + +QG Y EAI+Y+ L++ R S EA+ + + Y + GD + A
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAI 57
Query: 198 RFYDK 202
+Y K
Sbjct: 58 EYYQK 62
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
G + + D ++A ++ ALEL DP +A LG + +QG Y EAI+Y+
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALEL-----DP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 164 LQISER 169
L++ R
Sbjct: 64 LELDPR 69
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%)
Query: 113 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172
E A +K L LA + + E ++ LG + ++ AI+YH+ L I++ G+
Sbjct: 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338
Query: 173 YSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
G A ++ + ++ +G ERA ++ ++++
Sbjct: 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHL 370
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 119 EFKAALE-------LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167
EF A+E +AQ + D I E +A LG + G + A+KY LQ++
Sbjct: 318 EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 197
A + G R KY +AIKY++ L++ E YS ++ CY +GDL++
Sbjct: 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSN-------LSACYVSVGDLKKVV 59
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 34.3 bits (77), Expect = 0.048, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Query: 106 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164
N R Q ++E+A ++ ALE+ E A L + LQ+QGK +EA+ ++ +
Sbjct: 17 NIKREQGNIEEAVRLYRKALEVFP------EFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 165 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
+IS +AY + + E+ D++ A + Y + I
Sbjct: 71 RISPT------FADAYSNMGNTLKEMQDVQGALQCYTRAI 104
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 153 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
+ EAIKY+ +++ E + Y I+ CY GDLE+ F K
Sbjct: 37 FNEAIKYYQYAIELDPNEPVF------YSNISACYISTGDLEKVIEFTTK 80
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 153 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
+ EAIKY+ +++ E + Y I+ CY GDLE+ F K
Sbjct: 41 FNEAIKYYQYAIELDPNEPVF------YSNISACYISTGDLEKVIEFTTK 84
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKY-HSM 162
G F + + ++A + A EL +++ A+ +G+Y AI +
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHKDIT-------YLNNRAAAEYEKGEYETAISTLNDA 64
Query: 163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
V Q E +Y ++++ I + Y +LGDL++ +Y K ++
Sbjct: 65 VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 121 KAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGS 176
K ALE+ + V KD + K L Q QGKY E Y+ L+I + + +
Sbjct: 135 KRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV 194
Query: 177 TEAYGAIADCYTELGDLERAARFYDKYISR 206
+ +A CY + G ++A Y + ++R
Sbjct: 195 AKTKNNLASCYLKQGKFKQAETLYKEILTR 224
>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Vibrio Cholerae With An Endogenous Tryptophan
Length = 341
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 181 GAIADCYTELGDLERAARFYDK 202
G + +CYT++G+L R +F DK
Sbjct: 95 GWVLNCYTQMGELSRMTQFKDK 116
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 8/40 (20%)
Query: 24 LLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRR 63
L+ FVA GA V RGEL+ +NE ++IN +LR+
Sbjct: 471 LVSFVASSGAAV--------RGELRWINENYKEINNSLRQ 502
>pdb|3LKD|A Chain A, Crystal Structure Of The Type I Restriction-Modification
System Methyltransferase Subunit From Streptococcus
Thermophilus, Northeast Structural Genomics Consortium
Target Sur80
pdb|3LKD|B Chain B, Crystal Structure Of The Type I Restriction-Modification
System Methyltransferase Subunit From Streptococcus
Thermophilus, Northeast Structural Genomics Consortium
Target Sur80
Length = 542
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREA 156
L+ R+ G + +DL + F + + + EL +N+ + I+ ++ LGA+ Q+Q + A
Sbjct: 104 LVERVNDGS--FQLEDLAQGFRDIEQSDELYENLFEDID--LYSKKLGATPQKQNQTVAA 159
Query: 157 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY 200
+ VL ++ G+ G Y I T+ G ++A FY
Sbjct: 160 VXKELAVLDVAGHAGDXLGDAYEY-LIGQFATDSG--KKAGEFY 200
>pdb|1RW3|A Chain A, The Crystal Structure Of The Monomeric Reverse
Transcriptase From Moloney Murine Leukemia Virus
Length = 455
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 102 KTGKNFLRNQDLEKAFTEFKAALELA-----QNVKDPIE---EKKAARGLGASLQRQGKY 153
KTG F D +KA+ E K AL A ++ P E ++K G Q+ G +
Sbjct: 310 KTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPW 369
Query: 154 REAIKYHS 161
R + Y S
Sbjct: 370 RRPVAYLS 377
>pdb|4HKQ|A Chain A, Protein Dna Complex
Length = 681
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 102 KTGKNFLRNQDLEKAFTEFKAALELA-----QNVKDPIE---EKKAARGLGASLQRQGKY 153
KTG F D +KA+ E K AL A ++ P E ++K G Q+ G +
Sbjct: 339 KTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPW 398
Query: 154 REAIKYHS 161
R + Y S
Sbjct: 399 RRPVAYLS 406
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 153 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY-TELGDLERAARFYDKYI 204
Y AIK++S ++++ Y G+ +CY LGD RA KYI
Sbjct: 22 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 74
>pdb|1YB1|A Chain A, Crystal Structure Of Human 17-Beta-Hydroxysteroid
Dehydrogenase Type Xi
pdb|1YB1|B Chain B, Crystal Structure Of Human 17-Beta-Hydroxysteroid
Dehydrogenase Type Xi
Length = 272
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 117 FTEFKAALELAQNVKDPIEEKKA-ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175
F + K+ L L K +EE A +GLGA K H+ V+ S RE YS
Sbjct: 51 FAKLKSKLVLWDINKHGLEETAAKCKGLGA------------KVHTFVVDCSNREDIYSS 98
Query: 176 STEAYGAIAD 185
+ + I D
Sbjct: 99 AKKVKAEIGD 108
>pdb|3A45|A Chain A, Crystal Structure Of Mvnei1_2
pdb|3A45|B Chain B, Crystal Structure Of Mvnei1_2
pdb|3A46|A Chain A, Crystal Structure Of Mvnei1/thf Complex
pdb|3A46|B Chain B, Crystal Structure Of Mvnei1/thf Complex
Length = 289
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPI-----EEKKAARGLGASLQRQGKYREAIK 158
G +FL+N D++ + + K PI ++KK GLG L + YR I
Sbjct: 136 GPDFLKNDDID---------ISKIKKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKID 186
Query: 159 YHSMVLQISEREGE 172
H + ++++E E
Sbjct: 187 PHKLGSNLTDQEIE 200
>pdb|3A42|A Chain A, Crystal Structure Of Mvnei1
Length = 295
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPI-----EEKKAARGLGASLQRQGKYREAIK 158
G +FL+N D++ + + K PI ++KK GLG L + YR I
Sbjct: 136 GPDFLKNDDID---------ISKIKKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKID 186
Query: 159 YHSMVLQISEREGE 172
H + ++++E E
Sbjct: 187 PHKLGSNLTDQEIE 200
>pdb|3VK7|A Chain A, Crystal Structure Of Dna-glycosylase Bound To Dna
Containing 5- Hydroxyuracil
pdb|3VK7|B Chain B, Crystal Structure Of Dna-glycosylase Bound To Dna
Containing 5- Hydroxyuracil
pdb|3VK8|A Chain A, Crystal Structure Of Dna-glycosylase Bound To Dna
Containing Thymine Glycol
pdb|3VK8|B Chain B, Crystal Structure Of Dna-glycosylase Bound To Dna
Containing Thymine Glycol
Length = 295
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPI-----EEKKAARGLGASLQRQGKYREAIK 158
G +FL+N D++ + + K PI ++KK GLG L + YR I
Sbjct: 136 GPDFLKNDDID---------ISKIKKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKID 186
Query: 159 YHSMVLQISEREGE 172
H + ++++E E
Sbjct: 187 PHKLGSNLTDQEIE 200
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 20/93 (21%)
Query: 101 LKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKY 159
L N R Q ++E+A ++ ALE+ E A L + LQ+QGK +EA+ +
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFP------EFAAAHSNLASVLQQQGKLQEALMH 361
Query: 160 HSMVLQISEREGEYSGSTEAYGAIADCYTELGD 192
+ ++IS AD Y+ +G+
Sbjct: 362 YKEAIRISP-------------TFADAYSNMGN 381
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 132 DPIEEKKAARGLGASLQRQGKYREAI--------KYHSMVLQISEREGEY----SGSTEA 179
D ++ +A R G L Q Y+EAI + +++L+ E E+ +
Sbjct: 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPL 65
Query: 180 YGAIADCYTELGDLERAARFYDKYISRLESD 210
Y ++ CY +GDL A + + R E++
Sbjct: 66 YANMSQCYLNIGDLHEAEETSSEVLKREETN 96
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
LG +L G++ EAI + L + EG + + AIA Y ++G E A + K
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPNEG------KVHRAIAYSYEQMGSHEEALPHFKK 169
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 80 GSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA 139
G+ +PE EV++D +K++L ++ + +Q++ K +F + +K
Sbjct: 268 GNEVPEKEVLLD-EKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAA-----DKAG 321
Query: 140 ARGLGASLQRQGKYREAIKYHSMVLQISE 168
+ L L++ +Y++ + +S L ++E
Sbjct: 322 IKDLSQMLKKMPQYQKELSKYSTHLHLAE 350
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,557,865
Number of Sequences: 62578
Number of extensions: 212106
Number of successful extensions: 675
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 86
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)