Query 028316
Match_columns 210
No_of_seqs 205 out of 2037
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 15:45:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.8 3.3E-17 1.1E-21 111.0 13.3 104 95-210 11-114 (126)
2 4gcn_A Protein STI-1; structur 99.7 6.8E-17 2.3E-21 109.5 14.5 109 94-208 5-114 (127)
3 3u3w_A Transcriptional activat 99.7 3.2E-16 1.1E-20 120.7 17.5 117 92-208 150-268 (293)
4 3ro3_A PINS homolog, G-protein 99.7 1.3E-15 4.3E-20 105.7 18.3 120 90-209 42-161 (164)
5 3gyz_A Chaperone protein IPGC; 99.7 1.4E-16 4.8E-21 111.2 12.8 104 94-209 33-136 (151)
6 1qqe_A Vesicular transport pro 99.7 7.5E-16 2.6E-20 118.7 16.6 136 63-208 53-189 (292)
7 3ulq_A Response regulator aspa 99.7 9.7E-16 3.3E-20 122.0 17.3 135 63-207 119-254 (383)
8 2qfc_A PLCR protein; TPR, HTH, 99.7 1.1E-15 3.6E-20 117.7 17.0 117 92-208 150-268 (293)
9 2hr2_A Hypothetical protein; a 99.7 8.9E-16 3E-20 107.0 14.7 115 96-210 10-135 (159)
10 3ulq_A Response regulator aspa 99.7 3.1E-15 1E-19 119.1 19.6 136 63-208 159-295 (383)
11 3q15_A PSP28, response regulat 99.7 1.6E-15 5.5E-20 120.7 17.0 134 64-207 118-252 (378)
12 3ro3_A PINS homolog, G-protein 99.7 3.8E-15 1.3E-19 103.2 16.3 118 91-208 3-120 (164)
13 3gw4_A Uncharacterized protein 99.7 3.3E-15 1.1E-19 108.1 16.3 135 64-208 43-178 (203)
14 3q15_A PSP28, response regulat 99.7 8.9E-15 3E-19 116.4 19.1 135 63-208 157-292 (378)
15 2ifu_A Gamma-SNAP; membrane fu 99.7 1.2E-15 4E-20 118.4 13.5 113 91-204 110-222 (307)
16 4ga2_A E3 SUMO-protein ligase 99.7 7.1E-16 2.4E-20 107.4 9.8 103 96-210 30-133 (150)
17 3rkv_A Putative peptidylprolyl 99.6 4.4E-15 1.5E-19 104.4 12.9 109 95-209 9-129 (162)
18 2qfc_A PLCR protein; TPR, HTH, 99.6 1.5E-14 5.2E-19 111.3 16.5 136 63-208 91-227 (293)
19 3u3w_A Transcriptional activat 99.6 8.5E-15 2.9E-19 112.7 15.1 110 99-208 117-227 (293)
20 3sz7_A HSC70 cochaperone (SGT) 99.6 6.4E-15 2.2E-19 103.7 13.0 106 92-209 6-111 (164)
21 3upv_A Heat shock protein STI1 99.6 8.5E-15 2.9E-19 98.4 12.6 100 96-207 3-102 (126)
22 2vgx_A Chaperone SYCD; alterna 99.6 1.1E-14 3.8E-19 101.2 13.2 105 93-209 17-121 (148)
23 2ifu_A Gamma-SNAP; membrane fu 99.6 1.6E-14 5.6E-19 111.9 14.7 135 63-208 52-186 (307)
24 2xcb_A PCRH, regulatory protei 99.6 1.9E-14 6.3E-19 99.1 13.0 104 94-209 15-118 (142)
25 3gw4_A Uncharacterized protein 99.6 5.1E-14 1.7E-18 101.7 15.6 113 96-208 25-138 (203)
26 1qqe_A Vesicular transport pro 99.6 4.3E-14 1.5E-18 108.8 16.0 111 98-208 38-149 (292)
27 3sf4_A G-protein-signaling mod 99.6 3.2E-13 1.1E-17 107.2 18.7 136 63-208 203-338 (406)
28 3ro2_A PINS homolog, G-protein 99.6 3.8E-13 1.3E-17 103.6 17.9 135 64-208 200-334 (338)
29 4gyw_A UDP-N-acetylglucosamine 99.6 5.6E-14 1.9E-18 120.5 14.4 119 63-209 25-143 (723)
30 3sf4_A G-protein-signaling mod 99.6 1.5E-13 5E-18 109.1 15.6 119 90-208 180-298 (406)
31 4a1s_A PINS, partner of inscut 99.6 1.8E-13 6.2E-18 109.3 15.9 118 91-208 257-374 (411)
32 3q49_B STIP1 homology and U bo 99.5 1.5E-13 5.2E-18 93.2 12.6 101 97-209 9-109 (137)
33 3edt_B KLC 2, kinesin light ch 99.5 2E-13 6.9E-18 102.9 14.4 114 94-207 40-157 (283)
34 3ro2_A PINS homolog, G-protein 99.5 2.5E-13 8.5E-18 104.6 14.8 119 90-208 176-294 (338)
35 4a1s_A PINS, partner of inscut 99.5 5.9E-13 2E-17 106.3 17.2 135 64-208 103-254 (411)
36 3edt_B KLC 2, kinesin light ch 99.5 7.7E-13 2.6E-17 99.7 17.0 117 92-208 80-200 (283)
37 1hxi_A PEX5, peroxisome target 99.5 7.6E-14 2.6E-18 93.6 10.1 99 99-209 19-117 (121)
38 2fbn_A 70 kDa peptidylprolyl i 99.5 2.3E-13 8E-18 98.6 13.1 113 91-209 32-154 (198)
39 4ga2_A E3 SUMO-protein ligase 99.5 1.9E-14 6.3E-19 100.2 7.0 97 102-210 2-98 (150)
40 4gyw_A UDP-N-acetylglucosamine 99.5 1E-13 3.4E-18 119.0 12.3 103 95-209 7-109 (723)
41 1p5q_A FKBP52, FK506-binding p 99.5 2.3E-13 8E-18 106.9 13.5 111 93-209 143-262 (336)
42 2vyi_A SGTA protein; chaperone 99.5 8.7E-13 3E-17 88.0 13.6 107 91-209 6-112 (131)
43 1elw_A TPR1-domain of HOP; HOP 99.5 7E-13 2.4E-17 87.0 12.7 102 96-209 3-104 (118)
44 1elr_A TPR2A-domain of HOP; HO 99.5 9.7E-13 3.3E-17 87.9 13.6 107 96-208 3-110 (131)
45 1a17_A Serine/threonine protei 99.5 7E-13 2.4E-17 92.5 13.2 104 94-209 10-113 (166)
46 3urz_A Uncharacterized protein 99.5 8.5E-13 2.9E-17 96.6 14.1 101 97-209 4-120 (208)
47 3vtx_A MAMA; tetratricopeptide 99.5 3.1E-13 1.1E-17 96.4 11.4 101 97-209 73-173 (184)
48 2xev_A YBGF; tetratricopeptide 99.5 7.3E-13 2.5E-17 88.9 12.4 105 99-209 4-108 (129)
49 3nf1_A KLC 1, kinesin light ch 99.5 9.7E-13 3.3E-17 100.7 14.6 115 93-207 65-183 (311)
50 3nf1_A KLC 1, kinesin light ch 99.5 1.1E-12 3.9E-17 100.3 14.9 116 92-207 106-225 (311)
51 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 7.1E-13 2.4E-17 108.3 14.1 111 93-209 264-383 (457)
52 2pl2_A Hypothetical conserved 99.5 3.8E-13 1.3E-17 99.1 11.4 96 99-206 41-147 (217)
53 4i17_A Hypothetical protein; T 99.5 4.8E-13 1.6E-17 98.8 11.3 101 98-209 8-108 (228)
54 2lni_A Stress-induced-phosphop 99.5 2.7E-13 9.2E-18 91.1 9.1 103 95-209 14-116 (133)
55 4i17_A Hypothetical protein; T 99.5 6E-13 2.1E-17 98.2 11.6 106 98-209 43-149 (228)
56 1hh8_A P67PHOX, NCF-2, neutrop 99.5 6.6E-13 2.3E-17 96.8 11.6 105 98-208 38-152 (213)
57 3urz_A Uncharacterized protein 99.5 9.5E-13 3.3E-17 96.3 12.0 98 100-209 57-189 (208)
58 1ihg_A Cyclophilin 40; ppiase 99.5 1.3E-12 4.3E-17 104.1 13.6 110 94-209 220-339 (370)
59 2pl2_A Hypothetical conserved 99.4 7.3E-13 2.5E-17 97.5 11.0 100 97-209 73-183 (217)
60 2dba_A Smooth muscle cell asso 99.4 1.6E-12 5.4E-17 89.0 12.0 105 96-209 27-131 (148)
61 3k9i_A BH0479 protein; putativ 99.4 4E-13 1.4E-17 89.2 8.6 92 109-209 2-93 (117)
62 2kck_A TPR repeat; tetratricop 99.4 3.8E-13 1.3E-17 87.5 8.2 99 99-209 8-109 (112)
63 3vtx_A MAMA; tetratricopeptide 99.4 3.3E-12 1.1E-16 91.0 13.5 119 63-209 21-139 (184)
64 1na0_A Designed protein CTPR3; 99.4 3.2E-12 1.1E-16 84.5 12.5 101 97-209 9-109 (125)
65 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.5E-12 8.7E-17 96.8 13.4 105 93-209 39-143 (275)
66 1hz4_A MALT regulatory protein 99.4 1.6E-11 5.6E-16 96.9 17.6 115 94-208 50-166 (373)
67 2h6f_A Protein farnesyltransfe 99.4 6.2E-13 2.1E-17 106.2 8.5 101 97-209 131-232 (382)
68 3n71_A Histone lysine methyltr 99.4 1.2E-11 4.2E-16 101.5 16.1 109 100-208 312-424 (490)
69 2e2e_A Formate-dependent nitri 99.4 6.5E-12 2.2E-16 89.1 12.7 101 97-209 44-147 (177)
70 3n71_A Histone lysine methyltr 99.4 1.5E-11 5.1E-16 101.1 16.3 114 94-207 348-465 (490)
71 4g1t_A Interferon-induced prot 99.4 3.2E-12 1.1E-16 103.9 12.3 114 96-209 50-170 (472)
72 3uq3_A Heat shock protein STI1 99.4 1.6E-11 5.6E-16 91.3 14.7 106 97-208 79-204 (258)
73 3uq3_A Heat shock protein STI1 99.4 1.3E-11 4.6E-16 91.8 13.7 102 94-207 136-237 (258)
74 3qww_A SET and MYND domain-con 99.4 2E-11 6.9E-16 98.8 15.4 104 105-208 306-413 (433)
75 2c2l_A CHIP, carboxy terminus 99.4 3.6E-12 1.2E-16 97.6 10.5 101 97-209 4-104 (281)
76 1hz4_A MALT regulatory protein 99.4 2.6E-11 9E-16 95.7 15.4 134 64-208 70-205 (373)
77 3as5_A MAMA; tetratricopeptide 99.4 2.2E-11 7.5E-16 85.9 13.3 98 99-208 78-175 (186)
78 3qky_A Outer membrane assembly 99.4 6.9E-12 2.3E-16 94.5 11.1 107 97-209 52-180 (261)
79 3as5_A MAMA; tetratricopeptide 99.4 1.2E-11 4.2E-16 87.2 11.8 119 63-209 24-142 (186)
80 3hym_B Cell division cycle pro 99.3 5.7E-12 2E-16 97.2 10.2 107 97-209 193-302 (330)
81 2fo7_A Synthetic consensus TPR 99.3 1.6E-11 5.5E-16 82.0 11.0 100 98-209 36-135 (136)
82 2if4_A ATFKBP42; FKBP-like, al 99.3 4.2E-12 1.4E-16 99.8 9.3 111 93-209 175-296 (338)
83 1hh8_A P67PHOX, NCF-2, neutrop 99.3 1.8E-11 6.3E-16 89.0 12.2 99 96-209 5-103 (213)
84 4b4t_Q 26S proteasome regulato 99.3 9.4E-11 3.2E-15 94.2 16.6 136 63-208 71-206 (434)
85 2h6f_A Protein farnesyltransfe 99.3 1.2E-11 4.1E-16 98.8 10.6 105 93-209 93-198 (382)
86 2fo7_A Synthetic consensus TPR 99.3 4E-11 1.4E-15 80.0 11.7 99 99-209 3-101 (136)
87 2q7f_A YRRB protein; TPR, prot 99.3 2E-11 6.9E-16 90.2 10.8 100 98-209 126-225 (243)
88 3u4t_A TPR repeat-containing p 99.3 6.2E-12 2.1E-16 94.7 8.1 100 99-207 39-138 (272)
89 4eqf_A PEX5-related protein; a 99.3 1.9E-11 6.6E-16 96.1 11.3 101 97-209 213-313 (365)
90 4gco_A Protein STI-1; structur 99.3 2.3E-11 7.7E-16 82.0 10.0 97 63-187 29-125 (126)
91 2vsy_A XCC0866; transferase, g 99.3 1.4E-11 4.8E-16 103.0 10.8 99 98-208 58-159 (568)
92 4eqf_A PEX5-related protein; a 99.3 3.2E-11 1.1E-15 94.8 12.2 107 97-209 133-279 (365)
93 1p5q_A FKBP52, FK506-binding p 99.3 6.2E-11 2.1E-15 93.0 13.7 132 63-207 163-295 (336)
94 2q7f_A YRRB protein; TPR, prot 99.3 2.9E-11 9.9E-16 89.3 11.2 99 98-208 58-156 (243)
95 2vq2_A PILW, putative fimbrial 99.3 5.1E-11 1.7E-15 86.8 12.3 101 98-208 77-178 (225)
96 3qky_A Outer membrane assembly 99.3 1.9E-11 6.4E-16 92.1 10.2 107 97-209 15-129 (261)
97 1zu2_A Mitochondrial import re 99.3 3.2E-12 1.1E-16 88.8 5.4 88 110-209 15-123 (158)
98 1fch_A Peroxisomal targeting s 99.3 4.7E-11 1.6E-15 93.6 12.6 101 97-209 217-317 (368)
99 2l6j_A TPR repeat-containing p 99.3 8.7E-13 3E-17 86.1 2.0 100 97-202 4-103 (111)
100 1wao_1 Serine/threonine protei 99.3 2.9E-12 1E-16 105.2 5.6 102 96-209 5-106 (477)
101 2vq2_A PILW, putative fimbrial 99.3 8.1E-11 2.8E-15 85.7 12.7 101 97-209 113-214 (225)
102 1a17_A Serine/threonine protei 99.3 8.3E-11 2.8E-15 81.8 12.1 100 97-208 47-148 (166)
103 4abn_A Tetratricopeptide repea 99.3 4.5E-11 1.5E-15 98.0 12.4 100 98-209 171-290 (474)
104 3hym_B Cell division cycle pro 99.3 3E-11 1E-15 93.1 10.4 105 99-209 161-268 (330)
105 3qwp_A SET and MYND domain-con 99.3 1.1E-10 3.9E-15 94.4 13.5 108 101-208 291-402 (429)
106 2ho1_A Type 4 fimbrial biogene 99.2 1.2E-10 4.1E-15 86.7 12.6 98 99-206 107-204 (252)
107 3cv0_A Peroxisome targeting si 99.2 1E-10 3.5E-15 90.0 12.6 101 97-209 172-272 (327)
108 2ho1_A Type 4 fimbrial biogene 99.2 6.8E-11 2.3E-15 88.1 11.1 103 97-209 71-173 (252)
109 2xpi_A Anaphase-promoting comp 99.2 1.5E-10 5E-15 96.7 14.1 107 98-210 476-583 (597)
110 2vsy_A XCC0866; transferase, g 99.2 1.9E-10 6.5E-15 96.1 14.8 101 97-209 23-123 (568)
111 1w3b_A UDP-N-acetylglucosamine 99.2 4.8E-11 1.6E-15 94.7 9.8 99 97-207 237-335 (388)
112 1w3b_A UDP-N-acetylglucosamine 99.2 6.7E-11 2.3E-15 93.8 10.6 99 99-209 205-303 (388)
113 3u4t_A TPR repeat-containing p 99.2 1E-10 3.4E-15 88.0 10.8 108 97-210 142-254 (272)
114 4b4t_Q 26S proteasome regulato 99.2 6E-10 2.1E-14 89.5 15.9 146 63-208 20-166 (434)
115 4gcn_A Protein STI-1; structur 99.2 1E-10 3.5E-15 78.8 9.7 68 135-208 6-73 (127)
116 1na3_A Designed protein CTPR2; 99.2 1.5E-10 5E-15 72.5 9.8 84 96-191 8-91 (91)
117 3ieg_A DNAJ homolog subfamily 99.2 1.7E-10 5.9E-15 89.6 12.2 100 97-208 3-102 (359)
118 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.5E-10 5.2E-15 85.4 11.1 106 98-209 5-128 (225)
119 3ieg_A DNAJ homolog subfamily 99.2 3.4E-10 1.2E-14 88.0 13.7 102 100-209 237-338 (359)
120 2pzi_A Probable serine/threoni 99.2 9E-12 3.1E-16 106.5 4.9 99 97-208 467-565 (681)
121 1fch_A Peroxisomal targeting s 99.2 2E-10 6.8E-15 90.1 11.7 100 98-209 65-164 (368)
122 3cv0_A Peroxisome targeting si 99.2 8.3E-11 2.8E-15 90.5 9.2 107 97-209 206-318 (327)
123 1xnf_A Lipoprotein NLPI; TPR, 99.2 2.6E-10 8.9E-15 85.7 11.7 107 97-209 77-247 (275)
124 3gyz_A Chaperone protein IPGC; 99.2 1.6E-11 5.6E-16 85.4 4.6 73 132-210 31-103 (151)
125 2y4t_A DNAJ homolog subfamily 99.2 2E-10 6.9E-15 92.5 11.6 103 94-208 23-125 (450)
126 3upv_A Heat shock protein STI1 99.2 6E-10 2E-14 74.4 11.9 88 97-190 38-125 (126)
127 4abn_A Tetratricopeptide repea 99.2 6.8E-11 2.3E-15 97.0 8.4 101 96-209 101-211 (474)
128 2pzi_A Probable serine/threoni 99.2 4.4E-11 1.5E-15 102.3 7.3 100 97-209 433-532 (681)
129 2gw1_A Mitochondrial precursor 99.2 5.9E-10 2E-14 91.0 13.5 101 95-208 4-104 (514)
130 2fbn_A 70 kDa peptidylprolyl i 99.1 3.7E-10 1.3E-14 81.5 10.0 129 63-203 54-183 (198)
131 2yhc_A BAMD, UPF0169 lipoprote 99.1 4.3E-10 1.5E-14 83.0 10.4 106 98-209 42-179 (225)
132 2xpi_A Anaphase-promoting comp 99.1 6.1E-10 2.1E-14 92.9 12.6 106 98-209 442-548 (597)
133 2kat_A Uncharacterized protein 99.1 2.3E-10 7.9E-15 75.3 8.0 80 116-207 4-83 (115)
134 2hr2_A Hypothetical protein; a 99.1 1.4E-09 4.9E-14 75.6 12.2 103 63-169 27-134 (159)
135 2gw1_A Mitochondrial precursor 99.1 2.8E-10 9.5E-15 93.0 9.8 106 98-209 373-481 (514)
136 3fp2_A TPR repeat-containing p 99.1 4.2E-10 1.4E-14 92.5 10.9 105 99-209 380-494 (537)
137 3fp2_A TPR repeat-containing p 99.1 4.4E-10 1.5E-14 92.5 10.7 100 97-208 310-409 (537)
138 2y4t_A DNAJ homolog subfamily 99.1 1.3E-09 4.5E-14 87.7 12.8 101 101-209 261-361 (450)
139 4g1t_A Interferon-induced prot 99.1 2.7E-10 9.3E-15 92.4 8.6 134 63-209 67-207 (472)
140 3rkv_A Putative peptidylprolyl 99.1 3.1E-10 1E-14 79.3 7.7 90 93-194 59-149 (162)
141 2vyi_A SGTA protein; chaperone 99.1 1.3E-09 4.6E-14 72.2 10.2 85 97-193 46-130 (131)
142 1ouv_A Conserved hypothetical 99.1 2E-09 6.8E-14 81.3 12.3 93 98-206 39-143 (273)
143 2lni_A Stress-induced-phosphop 99.1 9.2E-10 3.1E-14 73.5 9.3 84 97-192 50-133 (133)
144 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 1.2E-09 4.2E-14 89.1 11.4 124 63-199 284-407 (457)
145 3ma5_A Tetratricopeptide repea 99.1 1E-09 3.5E-14 70.6 8.6 68 96-169 6-73 (100)
146 1ihg_A Cyclophilin 40; ppiase 99.1 1.1E-09 3.9E-14 87.0 10.6 96 92-199 268-363 (370)
147 2vgx_A Chaperone SYCD; alterna 99.1 3.1E-10 1.1E-14 78.4 6.5 80 118-209 8-87 (148)
148 1wao_1 Serine/threonine protei 99.1 6E-11 2E-15 97.4 3.2 93 97-201 40-134 (477)
149 3qwp_A SET and MYND domain-con 99.1 6.4E-09 2.2E-13 84.2 15.0 98 94-191 326-427 (429)
150 2r5s_A Uncharacterized protein 99.0 2.5E-09 8.4E-14 75.8 11.0 102 100-207 9-138 (176)
151 3ma5_A Tetratricopeptide repea 99.0 1.9E-09 6.6E-14 69.2 8.5 67 136-208 6-72 (100)
152 1na3_A Designed protein CTPR2; 99.0 3.9E-09 1.3E-13 65.8 9.5 71 133-209 5-75 (91)
153 3qou_A Protein YBBN; thioredox 99.0 2.3E-09 7.9E-14 82.1 9.8 105 98-208 118-250 (287)
154 1ouv_A Conserved hypothetical 99.0 8.1E-09 2.8E-13 77.9 12.6 95 96-206 73-179 (273)
155 3sz7_A HSC70 cochaperone (SGT) 99.0 4.3E-09 1.5E-13 73.5 10.0 65 97-167 45-109 (164)
156 2l6j_A TPR repeat-containing p 99.0 3.5E-09 1.2E-13 68.6 8.8 68 136-209 3-70 (111)
157 3qww_A SET and MYND domain-con 99.0 1.2E-08 4E-13 82.7 13.7 90 94-183 337-430 (433)
158 2r5s_A Uncharacterized protein 99.0 2.2E-09 7.4E-14 76.1 8.4 106 97-206 40-173 (176)
159 3k9i_A BH0479 protein; putativ 99.0 5.2E-09 1.8E-13 69.0 9.7 68 94-167 24-91 (117)
160 3mkr_A Coatomer subunit epsilo 99.0 5.6E-09 1.9E-13 80.2 11.0 104 99-208 132-266 (291)
161 3mkr_A Coatomer subunit epsilo 99.0 6.9E-09 2.4E-13 79.7 11.5 103 97-210 101-233 (291)
162 2kc7_A BFR218_protein; tetratr 99.0 1E-09 3.5E-14 70.0 5.8 88 101-208 4-92 (99)
163 2e2e_A Formate-dependent nitri 99.0 7.3E-10 2.5E-14 78.4 5.6 91 107-209 20-113 (177)
164 2if4_A ATFKBP42; FKBP-like, al 99.0 4.6E-10 1.6E-14 88.1 4.9 99 99-209 232-331 (338)
165 3rjv_A Putative SEL1 repeat pr 98.9 1.6E-08 5.5E-13 73.9 12.4 99 97-206 85-197 (212)
166 3rjv_A Putative SEL1 repeat pr 98.9 4.2E-09 1.4E-13 77.0 9.0 91 98-205 19-117 (212)
167 2kat_A Uncharacterized protein 98.9 1.2E-08 4.1E-13 66.9 9.4 85 97-191 19-103 (115)
168 1na0_A Designed protein CTPR3; 98.9 1.3E-08 4.5E-13 66.7 9.6 82 98-191 44-125 (125)
169 2v5f_A Prolyl 4-hydroxylase su 98.9 3.4E-08 1.2E-12 63.9 11.1 83 97-185 5-88 (104)
170 1klx_A Cysteine rich protein B 98.9 2.8E-08 9.6E-13 67.7 11.2 88 103-206 31-126 (138)
171 1elr_A TPR2A-domain of HOP; HO 98.9 4.3E-08 1.5E-12 64.8 11.9 88 97-191 38-126 (131)
172 2xcb_A PCRH, regulatory protei 98.9 2.1E-08 7E-13 68.4 10.4 72 132-209 13-84 (142)
173 4f3v_A ESX-1 secretion system 98.9 2.1E-07 7.3E-12 70.8 16.2 102 99-208 137-239 (282)
174 1zu2_A Mitochondrial import re 98.9 5E-09 1.7E-13 72.8 6.4 83 63-167 18-121 (158)
175 3qou_A Protein YBBN; thioredox 98.9 1.7E-08 5.7E-13 77.3 10.1 105 98-206 152-284 (287)
176 2v5f_A Prolyl 4-hydroxylase su 98.9 5.1E-08 1.7E-12 63.1 10.9 73 137-209 5-78 (104)
177 3q49_B STIP1 homology and U bo 98.8 1.2E-08 4.2E-13 68.6 8.1 87 97-190 43-129 (137)
178 2c2l_A CHIP, carboxy terminus 98.8 5.9E-09 2E-13 79.6 5.9 68 97-170 38-105 (281)
179 2dba_A Smooth muscle cell asso 98.8 5.1E-08 1.7E-12 66.1 9.6 81 96-188 64-144 (148)
180 1elw_A TPR1-domain of HOP; HOP 98.8 4.6E-08 1.6E-12 63.4 9.0 79 97-187 38-116 (118)
181 2ond_A Cleavage stimulation fa 98.8 2.6E-08 8.8E-13 76.8 8.9 96 99-206 136-232 (308)
182 2kc7_A BFR218_protein; tetratr 98.8 4.7E-08 1.6E-12 62.1 8.6 63 141-209 4-67 (99)
183 2ond_A Cleavage stimulation fa 98.8 2.3E-08 7.9E-13 77.1 7.9 102 96-209 98-201 (308)
184 1hxi_A PEX5, peroxisome target 98.7 7.6E-08 2.6E-12 63.9 9.1 65 139-209 19-83 (121)
185 2xev_A YBGF; tetratricopeptide 98.7 2.5E-07 8.6E-12 61.3 10.3 67 98-167 40-106 (129)
186 2xm6_A Protein corresponding t 98.7 4.2E-07 1.4E-11 74.5 12.9 93 99-207 330-433 (490)
187 3ffl_A Anaphase-promoting comp 98.6 1.6E-06 5.5E-11 60.1 13.5 107 96-202 19-147 (167)
188 2kck_A TPR repeat; tetratricop 98.6 1E-07 3.4E-12 61.2 6.9 67 137-209 6-72 (112)
189 2xm6_A Protein corresponding t 98.6 8.9E-07 3E-11 72.5 13.3 95 96-206 74-180 (490)
190 1dce_A Protein (RAB geranylger 98.5 1E-06 3.5E-11 73.8 10.6 101 97-209 63-176 (567)
191 3e4b_A ALGK; tetratricopeptide 98.4 1.2E-06 4E-11 71.3 8.6 92 99-205 178-279 (452)
192 3e4b_A ALGK; tetratricopeptide 98.4 1.5E-06 5.2E-11 70.7 9.0 91 98-206 249-351 (452)
193 2ooe_A Cleavage stimulation fa 98.4 1.5E-06 5.3E-11 71.8 9.2 98 98-206 322-454 (530)
194 4f3v_A ESX-1 secretion system 98.4 3.7E-07 1.3E-11 69.4 4.8 96 99-205 104-199 (282)
195 1dce_A Protein (RAB geranylger 98.4 1.3E-06 4.3E-11 73.2 8.3 103 96-210 106-225 (567)
196 1pc2_A Mitochondria fission pr 98.3 3.5E-06 1.2E-10 57.9 9.0 70 136-209 31-103 (152)
197 2ooe_A Cleavage stimulation fa 98.3 4.7E-06 1.6E-10 68.9 10.3 95 107-209 401-495 (530)
198 3dra_A Protein farnesyltransfe 98.3 8.1E-06 2.8E-10 63.0 10.8 101 97-209 67-178 (306)
199 1klx_A Cysteine rich protein B 98.3 5.5E-06 1.9E-10 56.2 8.7 78 111-206 9-90 (138)
200 3bee_A Putative YFRE protein; 98.3 7.4E-06 2.5E-10 51.7 8.5 65 137-207 6-73 (93)
201 1xi4_A Clathrin heavy chain; a 98.2 6.3E-06 2.2E-10 74.5 10.2 97 97-204 1105-1222(1630)
202 3dss_A Geranylgeranyl transfer 98.1 0.00011 3.8E-09 57.2 14.3 100 98-209 65-177 (331)
203 3txn_A 26S proteasome regulato 98.1 0.00014 4.8E-09 57.9 14.6 108 100-207 102-211 (394)
204 3dss_A Geranylgeranyl transfer 98.1 4E-05 1.4E-09 59.7 10.9 102 97-210 108-226 (331)
205 1xi4_A Clathrin heavy chain; a 98.1 4.9E-05 1.7E-09 69.0 12.5 90 103-207 1055-1164(1630)
206 3dra_A Protein farnesyltransfe 98.0 2.5E-05 8.5E-10 60.3 9.2 100 99-210 105-219 (306)
207 1pc2_A Mitochondria fission pr 98.0 9E-05 3.1E-09 50.8 10.6 67 97-167 32-101 (152)
208 3bee_A Putative YFRE protein; 98.0 4.9E-05 1.7E-09 47.8 7.8 64 98-167 7-73 (93)
209 3u64_A Protein TP_0956; tetrat 97.9 0.00038 1.3E-08 52.9 13.4 86 113-208 179-271 (301)
210 1b89_A Protein (clathrin heavy 97.9 5.5E-06 1.9E-10 66.8 3.6 94 99-206 124-236 (449)
211 3q7a_A Farnesyltransferase alp 97.9 2.8E-05 9.5E-10 61.0 7.1 101 97-209 88-199 (349)
212 3ly7_A Transcriptional activat 97.9 0.00012 4.1E-09 57.6 10.1 83 119-208 259-341 (372)
213 3q7a_A Farnesyltransferase alp 97.7 5.6E-05 1.9E-09 59.3 6.2 102 97-210 123-241 (349)
214 3mv2_B Coatomer subunit epsilo 97.7 0.0005 1.7E-08 52.9 11.1 103 99-207 102-208 (310)
215 1b89_A Protein (clathrin heavy 97.6 1E-05 3.4E-10 65.3 0.7 81 99-205 96-176 (449)
216 3ffl_A Anaphase-promoting comp 97.6 0.001 3.5E-08 46.1 9.9 89 93-188 59-166 (167)
217 3mv2_B Coatomer subunit epsilo 97.5 0.0013 4.4E-08 50.7 10.5 104 97-209 176-285 (310)
218 4b4t_P 26S proteasome regulato 97.4 0.0074 2.5E-07 48.9 14.9 112 96-207 136-248 (445)
219 1nzn_A CGI-135 protein, fissio 97.4 0.00068 2.3E-08 44.9 7.1 70 136-209 34-106 (126)
220 4b4t_R RPN7, 26S proteasome re 97.3 0.0015 5.2E-08 52.7 10.0 106 99-207 133-238 (429)
221 3u64_A Protein TP_0956; tetrat 97.2 0.00045 1.5E-08 52.4 5.5 76 89-169 191-272 (301)
222 3o48_A Mitochondria fission 1 97.0 0.006 2E-07 40.6 8.4 67 137-208 40-109 (134)
223 3ly7_A Transcriptional activat 96.9 0.0043 1.5E-07 48.8 8.5 106 96-207 195-307 (372)
224 1y8m_A FIS1; mitochondria, unk 96.9 0.017 5.9E-07 38.9 10.2 69 136-209 38-109 (144)
225 3txn_A 26S proteasome regulato 96.8 0.13 4.4E-06 40.9 19.7 98 110-207 72-169 (394)
226 1nzn_A CGI-135 protein, fissio 96.8 0.027 9.1E-07 37.2 10.4 66 98-167 36-104 (126)
227 4gns_B Protein CSD3, chitin bi 96.3 0.057 2E-06 46.6 11.6 60 138-203 338-397 (754)
228 3kae_A CDC27, possible protein 96.1 0.069 2.4E-06 37.2 9.3 95 101-206 37-143 (242)
229 4g26_A Pentatricopeptide repea 96.0 0.12 4.1E-06 42.5 12.2 98 99-206 107-204 (501)
230 4e6h_A MRNA 3'-END-processing 95.8 0.18 6.1E-06 43.1 12.6 105 100-209 381-502 (679)
231 1ya0_A SMG-7 transcript varian 95.7 0.037 1.3E-06 45.4 7.9 61 99-165 154-214 (497)
232 3o48_A Mitochondria fission 1 95.7 0.25 8.4E-06 32.8 10.7 66 97-167 40-108 (134)
233 4e6h_A MRNA 3'-END-processing 95.7 0.1 3.5E-06 44.6 10.8 99 99-208 436-535 (679)
234 1y8m_A FIS1; mitochondria, unk 95.4 0.34 1.1E-05 32.6 10.3 66 97-167 39-107 (144)
235 1ya0_A SMG-7 transcript varian 95.4 0.076 2.6E-06 43.6 8.5 64 137-206 152-215 (497)
236 4b4t_P 26S proteasome regulato 95.0 1.2 4E-05 36.0 16.0 83 91-173 171-254 (445)
237 4b4t_S RPN3, 26S proteasome re 94.8 0.038 1.3E-06 45.3 5.0 77 131-208 225-301 (523)
238 4h7y_A Dual specificity protei 94.7 0.43 1.5E-05 32.5 9.3 89 114-209 36-126 (161)
239 2ff4_A Probable regulatory pro 94.5 1.4 4.6E-05 34.9 14.3 106 96-207 114-235 (388)
240 4b4t_R RPN7, 26S proteasome re 93.7 0.17 5.8E-06 40.7 6.8 88 118-208 111-199 (429)
241 4gns_B Protein CSD3, chitin bi 93.1 0.31 1.1E-05 42.1 7.7 59 99-163 339-397 (754)
242 3kae_A CDC27, possible protein 93.0 1.6 5.3E-05 30.6 9.6 69 97-165 62-142 (242)
243 3spa_A Mtrpol, DNA-directed RN 92.5 1.4 4.9E-05 39.4 11.0 100 99-205 129-229 (1134)
244 3mkq_B Coatomer subunit alpha; 92.2 2.1 7.1E-05 29.9 9.8 46 108-164 16-61 (177)
245 4g26_A Pentatricopeptide repea 92.2 0.99 3.4E-05 37.0 9.4 85 112-206 85-169 (501)
246 2wpv_A GET4, UPF0363 protein Y 91.8 3.5 0.00012 31.6 13.6 102 99-201 55-158 (312)
247 4b4t_S RPN3, 26S proteasome re 91.4 0.4 1.4E-05 39.4 6.0 74 92-167 226-300 (523)
248 2w2u_A Hypothetical P60 katani 91.2 0.61 2.1E-05 28.2 5.3 28 141-168 23-50 (83)
249 2uy1_A Cleavage stimulation fa 91.0 3 0.0001 34.0 11.1 103 99-209 215-352 (493)
250 2v6y_A AAA family ATPase, P60 91.0 0.63 2.2E-05 28.1 5.3 28 141-168 15-42 (83)
251 3lpz_A GET4 (YOR164C homolog); 91.0 4.5 0.00015 31.3 15.1 101 99-200 57-159 (336)
252 4fhn_B Nucleoporin NUP120; pro 90.3 1.3 4.3E-05 40.3 8.9 102 99-201 844-962 (1139)
253 3mkq_A Coatomer beta'-subunit; 89.3 7.9 0.00027 33.0 12.9 26 138-163 682-707 (814)
254 4b4t_O 26S proteasome regulato 89.0 7 0.00024 30.9 11.3 102 105-206 84-198 (393)
255 4a5x_A MITD1, MIT domain-conta 88.2 1.7 5.9E-05 26.4 5.7 38 91-128 10-47 (86)
256 3mkq_A Coatomer beta'-subunit; 87.8 3.3 0.00011 35.4 9.5 25 99-123 683-707 (814)
257 2uy1_A Cleavage stimulation fa 87.6 2.5 8.4E-05 34.5 8.1 91 100-203 289-380 (493)
258 1wfd_A Hypothetical protein 15 87.0 1.7 5.9E-05 26.8 5.3 31 139-169 17-47 (93)
259 3re2_A Predicted protein; meni 86.8 5.2 0.00018 31.3 8.8 83 99-183 257-342 (472)
260 3re2_A Predicted protein; meni 85.6 7.6 0.00026 30.4 9.1 87 121-208 239-327 (472)
261 2cpt_A SKD1 protein, vacuolar 85.0 2.1 7E-05 27.7 5.1 29 140-168 21-49 (117)
262 2v6x_A Vacuolar protein sortin 84.9 2.6 8.9E-05 25.4 5.3 30 139-168 15-44 (85)
263 4gq2_M Nucleoporin NUP120; bet 84.4 9.5 0.00033 34.0 10.7 91 99-190 842-949 (950)
264 2rpa_A Katanin P60 ATPase-cont 82.9 2.4 8.2E-05 25.2 4.4 33 97-129 12-44 (78)
265 2rpa_A Katanin P60 ATPase-cont 82.8 1.2 4.1E-05 26.5 3.0 28 139-166 14-41 (78)
266 4gq4_A Menin; tumor suppressor 82.6 8.7 0.0003 30.7 8.5 69 114-184 281-350 (489)
267 3mkq_B Coatomer subunit alpha; 82.5 5.6 0.00019 27.7 6.8 47 148-205 16-62 (177)
268 2crb_A Nuclear receptor bindin 82.5 2.7 9.3E-05 25.7 4.5 31 136-166 14-44 (97)
269 4gq2_M Nucleoporin NUP120; bet 81.6 15 0.00053 32.6 10.9 71 139-209 842-929 (950)
270 4gq4_A Menin; tumor suppressor 81.6 11 0.00039 30.0 8.8 76 131-207 256-333 (489)
271 2ff4_A Probable regulatory pro 81.4 10 0.00035 29.8 8.9 73 97-175 171-244 (388)
272 2dl1_A Spartin; SPG20, MIT, st 81.2 3.3 0.00011 26.6 4.8 34 136-169 21-54 (116)
273 2w2u_A Hypothetical P60 katani 81.1 5.5 0.00019 23.9 5.6 35 94-128 16-50 (83)
274 3u84_A Menin; MLL, JUND, ledgf 80.5 15 0.0005 29.5 9.1 71 136-207 276-348 (550)
275 3u84_A Menin; MLL, JUND, ledgf 80.3 8.3 0.00028 30.8 7.6 66 115-182 297-363 (550)
276 2v6y_A AAA family ATPase, P60 79.1 6.3 0.00021 23.6 5.4 34 96-129 10-43 (83)
277 4h7y_A Dual specificity protei 78.3 13 0.00046 25.2 7.4 68 93-167 57-124 (161)
278 3t5x_A PCI domain-containing p 78.2 13 0.00043 26.4 7.7 60 94-154 11-70 (203)
279 1wfd_A Hypothetical protein 15 77.0 9.5 0.00033 23.3 5.9 38 92-129 10-47 (93)
280 4fhn_B Nucleoporin NUP120; pro 76.7 16 0.00056 33.1 9.7 70 139-208 844-930 (1139)
281 4a5x_A MITD1, MIT domain-conta 76.6 6.4 0.00022 23.8 5.0 33 134-166 13-45 (86)
282 3t5v_B Nuclear mRNA export pro 74.0 17 0.00057 29.5 8.1 94 112-206 141-249 (455)
283 2v6x_A Vacuolar protein sortin 72.9 12 0.00043 22.2 5.9 36 94-129 10-45 (85)
284 3t5x_A PCI domain-containing p 72.8 13 0.00044 26.4 6.6 32 136-167 13-44 (203)
285 3t5v_B Nuclear mRNA export pro 72.3 29 0.001 28.1 9.2 68 100-168 179-252 (455)
286 3spa_A Mtrpol, DNA-directed RN 72.3 28 0.00095 31.6 9.6 68 136-205 126-193 (1134)
287 2cwy_A Hypothetical protein TT 71.9 15 0.0005 22.6 6.2 69 101-171 5-73 (94)
288 3eab_A Spastin; spastin, MIT, 70.3 3.8 0.00013 25.0 2.8 28 140-167 19-49 (89)
289 2cpt_A SKD1 protein, vacuolar 70.3 10 0.00035 24.4 5.1 36 94-129 15-50 (117)
290 2ijq_A Hypothetical protein; s 68.4 25 0.00087 24.0 7.1 72 99-170 34-108 (161)
291 2o8p_A 14-3-3 domain containin 68.1 32 0.0011 25.0 8.2 58 150-207 138-198 (227)
292 3ax2_A Mitochondrial import re 67.3 8 0.00027 22.6 3.7 31 99-129 19-49 (73)
293 2crb_A Nuclear receptor bindin 66.9 19 0.00066 22.0 7.2 38 91-128 9-46 (97)
294 3ax2_A Mitochondrial import re 66.7 10 0.00034 22.2 4.0 26 182-207 22-47 (73)
295 1om2_A Protein (mitochondrial 66.2 11 0.00038 23.2 4.3 31 99-129 22-52 (95)
296 1zbp_A Hypothetical protein VP 63.8 19 0.00064 26.9 6.0 56 106-167 6-61 (273)
297 4b4t_O 26S proteasome regulato 62.7 54 0.0019 25.7 10.9 72 96-167 126-199 (393)
298 1qsa_A Protein (soluble lytic 60.8 38 0.0013 28.6 8.0 92 101-205 256-347 (618)
299 2vkj_A TM1634; membrane protei 58.2 29 0.00098 21.1 8.1 51 94-147 50-100 (106)
300 1om2_A Protein (mitochondrial 56.9 16 0.00056 22.5 3.9 26 141-166 24-49 (95)
301 3snx_A SUSD homolog, putative 56.6 30 0.001 27.9 6.6 52 154-205 161-219 (460)
302 4a1g_A Mitotic checkpoint seri 56.3 43 0.0015 22.6 6.3 80 117-206 48-130 (152)
303 2wvi_A Mitotic checkpoint seri 56.2 45 0.0015 22.8 6.7 79 118-206 44-125 (164)
304 2wb7_A PT26-6P; extra chromoso 55.5 85 0.0029 25.7 9.2 47 114-166 449-497 (526)
305 3ubw_A 14-3-3E, 14-3-3 protein 55.1 62 0.0021 24.0 9.9 74 94-167 143-229 (261)
306 2br9_A 14-3-3E, 14-3-3 protein 54.3 60 0.002 23.6 9.9 73 96-168 119-204 (234)
307 2wm9_A Dedicator of cytokinesi 53.7 83 0.0028 25.1 10.7 93 97-189 11-140 (428)
308 1wy6_A Hypothetical protein ST 53.6 48 0.0016 22.3 6.0 34 172-205 120-153 (172)
309 2npm_A 14-3-3 domain containin 53.0 67 0.0023 23.8 9.4 72 96-167 145-228 (260)
310 3lew_A SUSD-like carbohydrate 52.9 40 0.0014 27.4 6.8 33 174-206 200-232 (495)
311 3uzd_A 14-3-3 protein gamma; s 52.5 67 0.0023 23.6 9.9 74 95-168 119-205 (248)
312 1zbp_A Hypothetical protein VP 52.2 71 0.0024 23.8 11.4 107 91-208 25-131 (273)
313 3iqu_A 14-3-3 protein sigma; s 52.0 66 0.0023 23.4 10.0 74 94-167 120-206 (236)
314 4aez_C MAD3, mitotic spindle c 51.5 60 0.002 23.4 6.7 79 118-206 98-179 (223)
315 2yin_A DOCK2, dedicator of cyt 51.3 93 0.0032 24.9 11.0 91 100-190 38-146 (436)
316 3efz_A 14-3-3 protein; 14-3-3, 50.5 67 0.0023 23.9 7.0 71 95-166 140-226 (268)
317 3myv_A SUSD superfamily protei 50.0 42 0.0014 26.9 6.5 33 174-206 187-219 (454)
318 3snx_A SUSD homolog, putative 49.8 28 0.00095 28.1 5.3 32 134-165 188-219 (460)
319 2cwy_A Hypothetical protein TT 49.7 37 0.0013 20.7 4.7 64 143-208 7-70 (94)
320 3kez_A Putative sugar binding 49.4 41 0.0014 27.0 6.3 33 174-206 193-225 (461)
321 3esl_A Checkpoint serine/threo 49.0 68 0.0023 22.7 12.6 85 118-207 58-145 (202)
322 2br9_A 14-3-3E, 14-3-3 protein 48.9 74 0.0025 23.1 10.2 52 154-205 147-201 (234)
323 1zb1_A BRO1 protein; AIP1, BRO 48.6 96 0.0033 24.3 9.0 115 95-209 121-289 (392)
324 1o9d_A 14-3-3-like protein C; 47.7 83 0.0028 23.3 9.9 72 96-167 124-208 (260)
325 3lew_A SUSD-like carbohydrate 46.6 36 0.0012 27.6 5.6 33 134-166 200-232 (495)
326 1wy6_A Hypothetical protein ST 45.6 38 0.0013 22.8 4.5 34 131-164 119-152 (172)
327 2o8p_A 14-3-3 domain containin 45.3 84 0.0029 22.7 10.5 72 96-167 119-198 (227)
328 3myv_A SUSD superfamily protei 44.6 38 0.0013 27.2 5.4 34 134-167 187-220 (454)
329 2dl1_A Spartin; SPG20, MIT, st 44.2 58 0.002 20.8 5.0 18 112-129 18-35 (116)
330 3kez_A Putative sugar binding 43.6 39 0.0013 27.2 5.3 34 134-167 193-226 (461)
331 2ijq_A Hypothetical protein; s 43.3 40 0.0014 23.0 4.5 68 141-208 36-106 (161)
332 3efz_A 14-3-3 protein; 14-3-3, 42.8 1E+02 0.0035 22.9 7.0 54 153-206 168-226 (268)
333 3hdx_A SUSD homolog, SUSD supe 42.6 66 0.0022 25.9 6.5 33 174-206 194-226 (478)
334 2a9u_A Ubiquitin carboxyl-term 40.1 80 0.0027 21.0 6.1 40 96-135 41-80 (144)
335 3ubw_A 14-3-3E, 14-3-3 protein 39.6 1.1E+02 0.0039 22.6 10.2 52 154-205 173-227 (261)
336 3mcx_A SUSD superfamily protei 38.9 50 0.0017 26.6 5.3 33 174-206 199-231 (477)
337 1o9d_A 14-3-3-like protein C; 38.5 1.2E+02 0.004 22.5 10.2 52 154-205 152-206 (260)
338 2xze_A STAM-binding protein; h 37.2 67 0.0023 21.4 4.9 33 96-128 39-71 (146)
339 4a1g_A Mitotic checkpoint seri 36.8 88 0.003 21.0 5.4 33 134-166 98-130 (152)
340 2npm_A 14-3-3 domain containin 36.8 1.3E+02 0.0043 22.3 9.7 52 154-205 173-226 (260)
341 3qnk_A Putative lipoprotein; a 36.8 87 0.003 25.5 6.4 32 174-205 179-210 (517)
342 3uzd_A 14-3-3 protein gamma; s 35.9 1.3E+02 0.0044 22.1 10.3 52 154-205 148-202 (248)
343 2xze_A STAM-binding protein; h 35.5 71 0.0024 21.2 4.8 27 179-205 42-68 (146)
344 3hdx_A SUSD homolog, SUSD supe 34.8 67 0.0023 25.9 5.4 32 135-166 195-226 (478)
345 2wvi_A Mitotic checkpoint seri 33.9 1E+02 0.0035 21.0 5.4 36 132-167 91-126 (164)
346 3jq1_A SUSD superfamily protei 33.3 56 0.0019 26.4 4.7 32 174-205 177-208 (481)
347 3o10_A Sacsin; all-helical dom 33.1 81 0.0028 20.7 4.7 30 137-166 16-45 (141)
348 3i4g_A SUSD-like carbohydrate 33.0 1.3E+02 0.0043 24.7 6.8 32 174-205 195-226 (528)
349 3mcx_A SUSD superfamily protei 32.8 47 0.0016 26.7 4.2 33 134-166 199-231 (477)
350 3qnk_A Putative lipoprotein; a 31.8 75 0.0026 25.9 5.3 32 134-165 179-210 (517)
351 2e2a_A Protein (enzyme IIA); h 31.6 96 0.0033 19.4 4.8 28 136-163 19-46 (105)
352 1qsa_A Protein (soluble lytic 31.5 78 0.0027 26.7 5.4 93 107-205 295-409 (618)
353 4aez_C MAD3, mitotic spindle c 31.1 1.1E+02 0.0039 22.0 5.5 35 133-167 146-180 (223)
354 1wcr_A PTS system, N, N'-diace 30.6 99 0.0034 19.2 4.8 27 137-163 18-44 (103)
355 3i4g_A SUSD-like carbohydrate 30.3 90 0.0031 25.6 5.5 32 134-165 195-226 (528)
356 2vkj_A TM1634; membrane protei 28.8 1E+02 0.0035 18.7 7.1 49 136-188 52-101 (106)
357 2oo2_A Hypothetical protein AF 28.5 57 0.002 19.6 3.0 28 136-163 34-61 (86)
358 3jq1_A SUSD superfamily protei 28.1 50 0.0017 26.7 3.6 31 135-165 178-208 (481)
359 3esl_A Checkpoint serine/threo 27.5 1.6E+02 0.0056 20.8 8.4 70 93-167 76-145 (202)
360 3s6n_M SurviVal motor neuron p 27.5 51 0.0017 16.0 2.1 14 153-166 18-31 (37)
361 3iqu_A 14-3-3 protein sigma; s 27.1 1.8E+02 0.0062 21.1 10.1 53 153-205 149-204 (236)
362 2wb7_A PT26-6P; extra chromoso 26.8 67 0.0023 26.3 3.9 38 155-192 450-489 (526)
363 3k1s_A PTS system, cellobiose- 26.0 1.3E+02 0.0043 19.0 4.8 28 136-163 21-48 (109)
364 3l8r_A PTCA, putative PTS syst 25.2 1.4E+02 0.0048 19.2 4.8 29 135-163 35-63 (120)
365 1olp_A Alpha-toxin; zinc phosp 25.1 1.6E+02 0.0053 23.1 5.6 44 93-136 94-137 (370)
366 2wxu_A Phospholipase C; cytoly 24.2 1.5E+02 0.0051 23.2 5.4 43 93-135 94-136 (370)
367 2ymb_A MITD1, MIT domain-conta 22.9 18 0.00061 26.8 0.0 38 92-129 18-55 (257)
368 2a9u_A Ubiquitin carboxyl-term 22.6 1.7E+02 0.006 19.3 5.8 40 136-175 41-80 (144)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.75 E-value=3.3e-17 Score=110.97 Aligned_cols=104 Identities=15% Similarity=0.267 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028316 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
..+..+.++|..|+..|+|++|+..|++++++.+. .+.++.++|.++..+|++++|+..|++++++. +
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p 78 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE------NAILYSNRAACLTKLMEFQRALDDCDTCIRLD------S 78 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh------h
Confidence 35667899999999999999999999999997654 57899999999999999999999999999985 6
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028316 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
....+++++|.+|..+|++++|+.+|++++++.+++
T Consensus 79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 678899999999999999999999999999987654
No 2
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.75 E-value=6.8e-17 Score=109.54 Aligned_cols=109 Identities=16% Similarity=0.339 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-C
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-E 172 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-~ 172 (210)
...+.++.++|..++.+|+|++|+.+|++++++.+. .+.++.++|.+|..+|++++|+.+|++++++.+... .
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 345667899999999999999999999999998654 577899999999999999999999999999986543 3
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
....+.++.++|.+|..+|++++|+++|+++++..+
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 344678999999999999999999999999998654
No 3
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.73 E-value=3.2e-16 Score=120.67 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=107.3
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028316 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
+....+.++.++|.+|..+|++++|+.+|++++++.+.. ++......+++++|.+|..+|+|++|+.++++++++.++.
T Consensus 150 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 334566688999999999999999999999999999988 6778888899999999999999999999999999999988
Q ss_pred CCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhc
Q 028316 171 GEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLE 208 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~ 208 (210)
++....+.+++++|.+|..+| ++++|+.+|++|+.+++
T Consensus 230 ~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 888888999999999999999 57999999999998764
No 4
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.72 E-value=1.3e-15 Score=105.70 Aligned_cols=120 Identities=25% Similarity=0.363 Sum_probs=110.4
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028316 90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 90 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
.++....+.++..+|.++...|++++|+.++++++.+.+..+++.....++.++|.++...|++++|+.++++++++.++
T Consensus 42 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 121 (164)
T 3ro3_A 42 FGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 121 (164)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34455567788999999999999999999999999999999999988999999999999999999999999999999988
Q ss_pred hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 170 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 170 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.++.+....++..+|.+|...|++++|..++++++++.+.
T Consensus 122 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 122 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 8877778899999999999999999999999999988753
No 5
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.72 E-value=1.4e-16 Score=111.22 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 173 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 173 (210)
+....+++.+|.+++.+|++++|+..|++++.+.+. .+.+++++|.++..+|++++|+.+|++++++.
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~------ 100 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG------ 100 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC------
Confidence 346667999999999999999999999999997655 67799999999999999999999999999986
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
|..+.+++++|.+|..+|++++|+.+|++++++.++
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 667789999999999999999999999999988653
No 6
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.70 E-value=7.5e-16 Score=118.67 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=119.2
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
...+++.|.+++..... .++....+.++.++|.+|..+|++++|+.+|++++.+.+..++....+.++.+
T Consensus 53 ~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 53 LNLAGDSFLKAADYQKK----------AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp THHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666667777766554 55666677889999999999999999999999999999999999888999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 143 LGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 143 lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+|.+|... |++++|+.+|++++++.+..++......++.++|.+|..+|++++|+.+|++++++.+
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 99999996 9999999999999999876655555678899999999999999999999999998764
No 7
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.70 E-value=9.7e-16 Score=121.99 Aligned_cols=135 Identities=13% Similarity=0.123 Sum_probs=107.5
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKAAR 141 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~-~~~~~~~~~ 141 (210)
...++..+.+++..... .++....+.++..+|.+|..+|++++|+.++.++++++++.++ ....+.++.
T Consensus 119 ~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 119 YLSAIKFFKKAESKLIF----------VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHHHHHHTTGGG----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh----------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 34455555555555443 4556667778888888888888888888888888888888776 677778888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 142 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
++|.+|...|++++|+.+|++++++.++.++.+..+.++.++|.+|..+|++++|+.+|++++++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888777777777888888888888888888888888888754
No 8
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.70 E-value=1.1e-15 Score=117.73 Aligned_cols=117 Identities=18% Similarity=0.169 Sum_probs=103.8
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028316 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE-KKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
+....+.+++++|.+|..+|++++|+.+|++++++.+...+.... ..+++++|.+|..+|+|++|+.++++++++....
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~ 229 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 333456789999999999999999999999999998887655443 3899999999999999999999999999999877
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhhc
Q 028316 171 GEYSGSTEAYGAIADCYTELGDLERA-ARFYDKYISRLE 208 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~~~g~~~~A-~~~~~~al~~~~ 208 (210)
++....+.+++++|.+|..+|++++| ..+|++|+.+.+
T Consensus 230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 77777899999999999999999999 888999998764
No 9
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.70 E-value=8.9e-16 Score=106.96 Aligned_cols=115 Identities=16% Similarity=0.164 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV------KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
++..+.+.|..++..|+|++|+..|++++.+.+.. ...+..+.++.++|.++..+|+|++|+.+|++++++..+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 56678999999999999999999999999998873 112234569999999999999999999999999998432
Q ss_pred -hCCCcchHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028316 170 -EGEYSGSTEAY----GAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 170 -~~~~~~~~~~~----~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
..-.|....+| +++|.++..+|++++|+.+|++++++.++|
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 22236778888 999999999999999999999999998764
No 10
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.69 E-value=3.1e-15 Score=119.11 Aligned_cols=136 Identities=18% Similarity=0.247 Sum_probs=120.9
Q ss_pred HHHHHhcccccccccccccCCCCccccccc-hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDP-KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 141 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 141 (210)
...++..+.+++..... .++ ....+.++.++|.+|..+|++++|+.+|++++++.++.+++...+.++.
T Consensus 159 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 228 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKE----------HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228 (383)
T ss_dssp HHHHHHHHHHHHHHHHT----------CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh----------CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45566666666666654 333 5667788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 142 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
++|.+|..+|++++|+.++++++++.+..++.+..+.++.++|.+|..+|++++|..++++++++.+
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988877677899999999999999999999999999998754
No 11
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.69 E-value=1.6e-15 Score=120.67 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=107.0
Q ss_pred HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHH
Q 028316 64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKAARG 142 (210)
Q Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~-~~~~~~~~~~ 142 (210)
..++..+.+++..... .++....+.++.++|.+|...|++++|+.++.+++++.++.++ ....+.++.+
T Consensus 118 ~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 118 VEAIGYYREAEKELPF----------VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHHHHHHTTGGG----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 4444555555555443 4556667778888899999999999999999999988888765 5567888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+|.+|...|++++|+++|++++++.++.++....+.++.++|.+|..+|++++|+.+|++++++.
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 89999889999999999999988888777777778888888988888888888988888888754
No 12
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.68 E-value=3.8e-15 Score=103.24 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=109.4
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028316 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
++....+.++..+|.++...|++++|+.++.+++.+.+..++......++.++|.++...|++++|+.++++++++.+..
T Consensus 3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 55666788899999999999999999999999999999999998889999999999999999999999999999999888
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
++.+....++.++|.++...|++++|+.+++++++..+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 77777888999999999999999999999999998754
No 13
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.68 E-value=3.3e-15 Score=108.08 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=117.2
Q ss_pred HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHH
Q 028316 64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-DPIEEKKAARG 142 (210)
Q Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~-~~~~~~~~~~~ 142 (210)
..++..+.+++..... .++....+.++.++|.++...|++++|+.++.+++.+++..+ ++.....++.+
T Consensus 43 ~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 112 (203)
T 3gw4_A 43 DEARASFQALQQQAQK----------SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYE 112 (203)
T ss_dssp HHHHHHHHHHHHHHHT----------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 3344445555555544 556667788899999999999999999999999999999988 45578889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+|.++...|++++|+.++++++++.+..++....+.++.++|.++...|++++|..++++++++.+
T Consensus 113 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 113 VATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877777788899999999999999999999999998764
No 14
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.67 E-value=8.9e-15 Score=116.36 Aligned_cols=135 Identities=14% Similarity=0.137 Sum_probs=117.3
Q ss_pred HHHHHhcccccccccccccCCCCccccccc-hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDP-KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 141 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 141 (210)
...++..+.+++..... .++ ....+.++.++|.+|..+|++++|+.+|++++++++..+++...+.++.
T Consensus 157 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 226 (378)
T 3q15_A 157 THVSMYHILQALDIYQN----------HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL 226 (378)
T ss_dssp HHHHHHHHHHHHHHHHT----------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh----------CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35555566666665543 232 4456778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 142 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
++|.+|..+|++++|+.++++++++.+..++... ..++.++|.+|..+|++++|..++++++++.+
T Consensus 227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887766544 89999999999999999999999999998764
No 15
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.67 E-value=1.2e-15 Score=118.38 Aligned_cols=113 Identities=16% Similarity=0.080 Sum_probs=66.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028316 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
++....+.++.++|.+|.. |++++|+.+|++++.+.+..++......++.++|.+|..+|+|++|+.+|++++++..+.
T Consensus 110 g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 110 GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 3344445555666666655 666666666666666666655555555566666666666666666666666666665555
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028316 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 204 (210)
+..+....++.++|.++..+|++++|+.+|++++
T Consensus 189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4433444556666666666666666666666665
No 16
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.65 E-value=7.1e-16 Score=107.43 Aligned_cols=103 Identities=11% Similarity=0.136 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
.....+.+|.+|+..|+|++|+.+|++++++.+. .+.++.++|.+|...|++++|+.+|++++++. |.
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~ 97 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------DPKAHRFLGLLYELEENTDKAVECYRRSVELN------PT 97 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC------CC
Confidence 4556789999999999999999999999998655 67899999999999999999999999999986 77
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhhccC
Q 028316 176 STEAYGAIADCYTELGDLERAARF-YDKYISRLESD 210 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~-~~~al~~~~~~ 210 (210)
...+++++|.+|...|++++|... +++++++.+++
T Consensus 98 ~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 98 QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 789999999999999999887765 59999987653
No 17
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.64 E-value=4.4e-15 Score=104.36 Aligned_cols=109 Identities=14% Similarity=0.112 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028316 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD------------PIEEKKAARGLGASLQRQGKYREAIKYHSM 162 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 162 (210)
..+..+...|..++..|+|++|+..|.+++.+.+.... .+....++.++|.+|..+|++++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45667899999999999999999999999998654311 334667999999999999999999999999
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 163 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
++++. +....+++++|.+|..+|++++|+.+|++++++.++
T Consensus 89 al~~~------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 89 VLKRE------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHhcC------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 99985 677899999999999999999999999999998765
No 18
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.63 E-value=1.5e-14 Score=111.26 Aligned_cols=136 Identities=13% Similarity=0.015 Sum_probs=109.0
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
++.+++.+.+.+...+. ...........+.+|.++...|++++|+.++++++.+.....+......++++
T Consensus 91 y~~A~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 91 YKEIYNKVWNELKKEEY----------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccC----------ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 44555555555544332 22223344456779999999999999999999999988776777777889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+|.+|...|++++|+.+|++++++.+...+.+. ...+++++|.+|..+|++++|+.++++++++.+
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877655443 337999999999999999999999999998753
No 19
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.63 E-value=8.5e-15 Score=112.66 Aligned_cols=110 Identities=14% Similarity=0.036 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCCcchH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST 177 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~ 177 (210)
.+..+|.++...+++++|+.+|++++.+.....+......+++++|.+|...|++++|+.+|+++++..++. .+.+..+
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 445689999999999999999999999777767777778899999999999999999999999999988876 5556677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 178 EAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.+++++|.+|..+|++++|+.++++++++.+
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998764
No 20
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.63 E-value=6.4e-15 Score=103.72 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=96.0
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 028316 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 171 (210)
.....+..++.+|.+++..|+|++|+.+|++++.+.+. ...++.++|.+|...|++++|+.+|++++++.
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---- 75 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA------NPIYLSNRAAAYSASGQHEKAAEDAELATVVD---- 75 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----
Confidence 34456778999999999999999999999999997655 57789999999999999999999999999985
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 172 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+....+++++|.+|..+|++++|+.+|++++++.++
T Consensus 76 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 76 --PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred --CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 666899999999999999999999999999998764
No 21
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=8.5e-15 Score=98.45 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
.+..+..+|..++..|+|++|+..|++++.+.+. ...++.++|.++...|++++|+.+|++++++. +.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~ 70 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKD------PN 70 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CC
Confidence 4557889999999999999999999999997654 56889999999999999999999999999885 66
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 176 STEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
...+++++|.+|..+|++++|+.+|++++++.
T Consensus 71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 71 FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 68899999999999999999999999999887
No 22
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.62 E-value=1.1e-14 Score=101.17 Aligned_cols=105 Identities=21% Similarity=0.154 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028316 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 172 (210)
++.....++.+|..++..|++++|+..|++++.+.+. ...+++++|.++...|++++|+.+|++++.+.
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----- 85 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD----- 85 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----
Confidence 3445667899999999999999999999999997554 57788999999999999999999999999885
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
|....+++++|.+|..+|++++|+.+|++++++.+.
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 666789999999999999999999999999987653
No 23
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.61 E-value=1.6e-14 Score=111.92 Aligned_cols=135 Identities=13% Similarity=0.046 Sum_probs=123.9
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
...+++.|.+++..... .++....+.++.++|.+|..+|++++|+.+|++++.+.+..+++...+.++.+
T Consensus 52 ~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 52 LEQAKDAYLQEAEAHAN----------NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45566667777777666 66777788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+|.+|.. |++++|+.+|++++++.+..++......++.++|.+|..+|++++|+.+|++++++.+
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999998 9999999999999999999999999999999999999999999999999999998764
No 24
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.61 E-value=1.9e-14 Score=99.07 Aligned_cols=104 Identities=22% Similarity=0.210 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 173 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 173 (210)
+.....++.+|..++..|++++|+..|++++.+.+. ...++.++|.++...|++++|+.+|++++.+.
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------ 82 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY------DARYFLGLGACRQSLGLYEQALQSYSYGALMD------ 82 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence 345667899999999999999999999999997554 57789999999999999999999999999885
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
|....+++++|.+|..+|++++|+.+|++++++.+.
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 666788999999999999999999999999988653
No 25
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.60 E-value=5.1e-14 Score=101.74 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc-
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS- 174 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~- 174 (210)
.+.++..+|.++...|++++|+.++++++.+++..++......++.++|.++...|++++|+.++++++++.+..++.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 5667899999999999999999999999999999999999999999999999999999999999999999998777444
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
....++.++|.++...|++++|..++++++++.+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999998653
No 26
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.60 E-value=4.3e-14 Score=108.82 Aligned_cols=111 Identities=12% Similarity=0.084 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
..+...|.+|...|+|++|+.+|.+++.+.++.+++...+.++.++|.+|..+|++++|+.+|++++++....++....+
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34566788999999999999999999999999999988899999999999999999999999999999998888777778
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhc
Q 028316 178 EAYGAIADCYTEL-GDLERAARFYDKYISRLE 208 (210)
Q Consensus 178 ~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~ 208 (210)
.++.++|.+|... |++++|+.+|++|+++.+
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 8999999999996 999999999999999875
No 27
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=3.2e-13 Score=107.18 Aligned_cols=136 Identities=24% Similarity=0.306 Sum_probs=118.6
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
...++..+.+++...+. .++....+.++..+|.++...|++++|+.++++++.+.+..++......++.+
T Consensus 203 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 272 (406)
T 3sf4_A 203 FRDAVIAHEQRLLIAKE----------FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 272 (406)
T ss_dssp HHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh----------cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHH
Confidence 34455555555555443 45555667789999999999999999999999999999999998888999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+|.++...|++++|+.++++++++....++.+....++..+|.+|...|++++|+.++++++++.+
T Consensus 273 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988887777889999999999999999999999999998754
No 28
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=3.8e-13 Score=103.57 Aligned_cols=135 Identities=24% Similarity=0.312 Sum_probs=116.5
Q ss_pred HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 028316 64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL 143 (210)
Q Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~l 143 (210)
..++..+.+++...+. .++......++..+|.++...|++++|+.++++++.+.+..+++.....++..+
T Consensus 200 ~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 269 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKE----------FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 269 (338)
T ss_dssp HHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 4444455555554443 345556677889999999999999999999999999999999998889999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 144 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
|.++...|++++|+.++++++++....++.+....++..+|.+|...|++++|..++++++++.+
T Consensus 270 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888777888999999999999999999999999998865
No 29
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.56 E-value=5.6e-14 Score=120.54 Aligned_cols=119 Identities=15% Similarity=0.229 Sum_probs=88.4
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
.+.++..|++++...+. ...+++++|.++..+|++++|+.+|++++++.+. .+.++++
T Consensus 25 ~~eAi~~~~kAl~l~P~----------------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------~~~a~~n 82 (723)
T 4gyw_A 25 IEEAVRLYRKALEVFPE----------------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT------FADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHCSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHH
Confidence 44555566666655443 2446777888888888888888888888886544 5667888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+|.++..+|++++|+.+|++++++. +..+.+++++|.+|..+|++++|+.+|++|+++.++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN------PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8888888888888888888887774 566778888888888888888888888888876553
No 30
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=1.5e-13 Score=109.12 Aligned_cols=119 Identities=17% Similarity=0.220 Sum_probs=110.1
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028316 90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 90 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
.++....+.++..+|.++...|++++|+.++++++.+.+..+++.....++.++|.++...|++++|+.++++++++...
T Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 259 (406)
T 3sf4_A 180 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 259 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 45566677789999999999999999999999999999999999889999999999999999999999999999999988
Q ss_pred hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 170 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 170 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.++......++.++|.+|...|++++|+.++++++++.+
T Consensus 260 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 877777789999999999999999999999999998754
No 31
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=1.8e-13 Score=109.26 Aligned_cols=118 Identities=20% Similarity=0.324 Sum_probs=102.5
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028316 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
++......++..+|.+|..+|++++|+.++++++.+.+..++......++..+|.++...|++++|+.++++++++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 34444566788899999999999999999999999999888888888899999999999999999999999999998887
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
++......++..+|.+|..+|++++|..+|++++++.+
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 77777788899999999999999999999999988764
No 32
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.54 E-value=1.5e-13 Score=93.22 Aligned_cols=101 Identities=11% Similarity=0.069 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
+..++.+|..++..|++++|+.+|.+++.+.+. ...++.++|.++...|++++|+.++++++++. +..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~~ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELD------GQS 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------chh
Confidence 456899999999999999999999999997654 56789999999999999999999999999885 667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..+++++|.+|..+|++++|+.+|+++++..++
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 789999999999999999999999999987654
No 33
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.54 E-value=2e-13 Score=102.94 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE- 170 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~- 170 (210)
+..+.++..+|.++...|++++|+.+|++++.+.++. ++.+....++.++|.++...|++++|+.++++++++.++.
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 4567788999999999999999999999999999877 6777889999999999999999999999999999998765
Q ss_pred -CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 171 -GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 171 -~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.+.+....++.++|.+|...|++++|+.++++++++.
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3346778899999999999999999999999999873
No 34
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=2.5e-13 Score=104.62 Aligned_cols=119 Identities=17% Similarity=0.220 Sum_probs=109.4
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028316 90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 90 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
.++......++..+|.++...|++++|+.++++++++.+..+++.....++.++|.++...|++++|+.++++++++...
T Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 176 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 34555667788999999999999999999999999999999888888999999999999999999999999999999988
Q ss_pred hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 170 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 170 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.++......++..+|.+|...|++++|..++++++++.+
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 877777889999999999999999999999999998754
No 35
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=5.9e-13 Score=106.30 Aligned_cols=135 Identities=19% Similarity=0.267 Sum_probs=105.8
Q ss_pred HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 028316 64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL 143 (210)
Q Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~l 143 (210)
..++..+.+++..... .++....+.++..+|.+|...|++++|+.+|++++.+.+..++......++.++
T Consensus 103 ~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 103 NKAMQYHKHDLTLAKS----------MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172 (411)
T ss_dssp HHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 4444455555554443 455566677788888888888888888888888888888888877788888888
Q ss_pred HHHHHHcCC-----------------HHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 144 GASLQRQGK-----------------YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 144 g~~~~~~~~-----------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
|.+|...|+ +++|+.++++++++....++.+....++.++|.+|...|++++|+.++++++++
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 888888888 888888888888888777776777778888888888888888888888888876
Q ss_pred hc
Q 028316 207 LE 208 (210)
Q Consensus 207 ~~ 208 (210)
.+
T Consensus 253 ~~ 254 (411)
T 4a1s_A 253 AR 254 (411)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 36
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.53 E-value=7.7e-13 Score=99.69 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=102.7
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028316 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
+......++..+|.++...|++++|+.+|.+++.+.++. .+.+....++.++|.++...|++++|+.++++++++.+.
T Consensus 80 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345567789999999999999999999999999998775 334678889999999999999999999999999999766
Q ss_pred h--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 170 E--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 170 ~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
. .+.+....++.++|.+|..+|++++|+.++++++++.+
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5 33466788999999999999999999999999998743
No 37
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.53 E-value=7.6e-14 Score=93.55 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
..+.+|..+...|++++|+..|++++.+.+. ...+++.+|.++...|++++|+..|++++++. |....
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------P~~~~ 86 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLD------PKDIA 86 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHH
Confidence 3678899999999999999999999997655 67889999999999999999999999999986 66778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 179 AYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
++.++|.+|...|++++|+.+|+++++..+.
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999999999999987654
No 38
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.52 E-value=2.3e-13 Score=98.57 Aligned_cols=113 Identities=20% Similarity=0.249 Sum_probs=96.4
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH----------HHHHHHHHHHHHHHHcCCHHHHHHHH
Q 028316 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI----------EEKKAARGLGASLQRQGKYREAIKYH 160 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~----------~~~~~~~~lg~~~~~~~~~~~A~~~~ 160 (210)
......+..+..+|..++..|+|++|+..|.+++.+.+...+.. ....++.++|.++...|++++|+.++
T Consensus 32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34455677889999999999999999999999999766532111 12478999999999999999999999
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 161 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 161 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
++++++. +....+++++|.+|..+|++++|+.+|++++++.+.
T Consensus 112 ~~al~~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 112 SKVLKID------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHHS------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhC------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 9999885 666789999999999999999999999999988654
No 39
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.52 E-value=1.9e-14 Score=100.19 Aligned_cols=97 Identities=11% Similarity=0.126 Sum_probs=84.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHH
Q 028316 102 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 181 (210)
Q Consensus 102 ~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 181 (210)
.+|.++...|++++|+..+++++...+ .....++++|.+|...|+|++|+.+|++++++. |..+.++.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p------~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~------p~~~~a~~ 69 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPR------QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ------ERDPKAHR 69 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHH------HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHH
Confidence 478899999999999999999988544 478888999999999999999999999999986 77789999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028316 182 AIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 182 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
++|.+|..+|++++|+.+|++++++.+++
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 98 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELNPTQ 98 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999987653
No 40
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=1e-13 Score=118.96 Aligned_cols=103 Identities=23% Similarity=0.274 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028316 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
..+.+++++|.++..+|++++|+.+|++++++.+. ...+++++|.+|..+|++++|+.+|++++++. +
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~------P 74 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE------FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS------P 74 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C
Confidence 35667999999999999999999999999998655 67899999999999999999999999999986 7
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..+.+++++|.+|..+|++++|+++|++++++.++
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~ 109 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 77899999999999999999999999999998654
No 41
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.52 E-value=2.3e-13 Score=106.86 Aligned_cols=111 Identities=13% Similarity=0.170 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028316 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~---------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
+...+.++..+|.+++..|+|++|+..|++++.+.+...+ ......++.++|.++..+|++++|+.+|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556778899999999999999999999999998776421 2223679999999999999999999999999
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+++. +....+++++|.+|..+|++++|+.+|++++++.++
T Consensus 223 l~~~------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 223 LELD------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262 (336)
T ss_dssp HHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHhC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 9985 667899999999999999999999999999988664
No 42
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.50 E-value=8.7e-13 Score=88.01 Aligned_cols=107 Identities=18% Similarity=0.249 Sum_probs=93.8
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028316 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
.........++.+|..+...|++++|+.+|++++...+. ...++..+|.++...|++++|+.+++++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 76 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICID--- 76 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---
Confidence 344556778899999999999999999999999987543 46789999999999999999999999999874
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+....++..+|.++...|++++|+.+|+++++..++
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 112 (131)
T 2vyi_A 77 ---PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD 112 (131)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred ---ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence 555789999999999999999999999999987654
No 43
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.50 E-value=7e-13 Score=86.95 Aligned_cols=102 Identities=16% Similarity=0.259 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
.+..++.+|..+...|++++|+..|++++...+. ...++.++|.++...|++++|+.+++++++.. +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~ 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------PD 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TT
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC------cc
Confidence 3456888999999999999999999999997544 46789999999999999999999999999875 55
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 176 STEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
...++.++|.++...|++++|..+++++++..++
T Consensus 71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 6789999999999999999999999999987654
No 44
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.50 E-value=9.7e-13 Score=87.89 Aligned_cols=107 Identities=18% Similarity=0.361 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCCc
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYS 174 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~ 174 (210)
.+..++.+|..+...|++++|+.+|++++...+. ...++.++|.++...|++++|+.+++++++..... .+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 3557889999999999999999999999997543 46788999999999999999999999999987543 2222
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
....+++++|.+|...|++++|..+|+++++..+
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 3378999999999999999999999999998754
No 45
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.49 E-value=7e-13 Score=92.54 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 173 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 173 (210)
...+..++.+|.+++..|++++|+.+|++++.+.+. ...++.++|.++...|++++|+.+++++++..
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------ 77 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELD------ 77 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 445677899999999999999999999999997554 46788999999999999999999999999875
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+....+++++|.++..+|++++|+.+|+++++..++
T Consensus 78 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 113 (166)
T 1a17_A 78 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113 (166)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 556789999999999999999999999999987654
No 46
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.49 E-value=8.5e-13 Score=96.55 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH----------------HHHHHHHcCCHHHHHHHH
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG----------------LGASLQRQGKYREAIKYH 160 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~----------------lg~~~~~~~~~~~A~~~~ 160 (210)
+..++..|..+...|++++|+..|++++.+.+. ...+++. +|.++...|++++|+..|
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 77 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY 77 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345788899999999999999999999997655 5667777 999999999999999999
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 161 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 161 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
++++++. |....++.++|.+|...|++++|+.+|++++++.++
T Consensus 78 ~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 78 KELLQKA------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp HHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999886 677899999999999999999999999999998765
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=3.1e-13 Score=96.42 Aligned_cols=101 Identities=20% Similarity=0.246 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..+...+|.++...++++.|...+.+++.+.+. ...++..+|.++...|++++|+.+|++++++. |..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~------p~~ 140 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTV------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------PGF 140 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc------chh
Confidence 345777899999999999999999999886554 56788999999999999999999999999885 677
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+.+++++|.+|..+|++++|+.+|++|+++.++
T Consensus 141 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 141 IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 899999999999999999999999999987653
No 48
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.49 E-value=7.3e-13 Score=88.88 Aligned_cols=105 Identities=14% Similarity=0.073 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
+++.+|..++..|++++|+..|++++...+. ......+++.+|.++...|++++|+.+|+++++... +.+....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~ 77 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN---GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP---THDKAAG 77 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TSTTHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC---CCcccHH
Confidence 3678899999999999999999999986553 333457899999999999999999999999988751 2233478
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 179 AYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+++.+|.+|..+|++++|+.+|+++++..++
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 8999999999999999999999999987764
No 49
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=9.7e-13 Score=100.71 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028316 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
......++..+|.++...|++++|+.++++++.+.++. .+.+....++.++|.++...|++++|+.++++++++.++.
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 144 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 34456678999999999999999999999999999876 6677788999999999999999999999999999998766
Q ss_pred --CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 171 --GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 171 --~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
++.+....++.++|.+|...|++++|+.+++++++..
T Consensus 145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5667788899999999999999999999999999874
No 50
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=1.1e-12 Score=100.33 Aligned_cols=116 Identities=22% Similarity=0.307 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028316 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
+......++..+|.++...|++++|+.++++++++.++. ++.+....++.++|.++...|++++|+.++++++++.++
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345567788999999999999999999999999998776 666778899999999999999999999999999999776
Q ss_pred h--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 170 E--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 170 ~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
. ++.+....++..+|.+|...|++++|+.+++++++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5 3456678899999999999999999999999999864
No 51
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.48 E-value=7.1e-13 Score=108.32 Aligned_cols=111 Identities=12% Similarity=0.111 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028316 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~---------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
....+..+..+|..++.+++|++|+..|++++.+.+.... ......+++++|.+|..+|+|++|+.+|+++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4456778899999999999999999999999998876421 2233679999999999999999999999999
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+++. +....+++++|.+|..+|++++|+.+|++++++.++
T Consensus 344 l~~~------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 344 LGLD------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HhcC------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9986 667899999999999999999999999999987654
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.48 E-value=3.8e-13 Score=99.10 Aligned_cols=96 Identities=10% Similarity=0.014 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ-----------GKYREAIKYHSMVLQIS 167 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al~~~ 167 (210)
+++.+|.++...|++++|+..|++++++.+. ...++.++|.++... |++++|+..|++++++.
T Consensus 41 a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 114 (217)
T 2pl2_A 41 ALYWLARTQLKLGLVNPALENGKTLVARTPR------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC
Confidence 4556666666666666666666666665433 344555555555555 55555555555555543
Q ss_pred HHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 168 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 168 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
|....++.++|.+|..+|++++|+.+|++++++
T Consensus 115 ------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 115 ------PRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 334445555555555555555555555555443
No 53
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.47 E-value=4.8e-13 Score=98.79 Aligned_cols=101 Identities=18% Similarity=0.292 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
..++..|.+++..|++++|+..|++++++.+. ....+++++|.++...|++++|+.+|+++++.. +...
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-----QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN------YNLA 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CSHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-----CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC------cchH
Confidence 46899999999999999999999999997641 133577889999999999999999999998765 7788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 178 EAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.++..+|.+|..+|++++|+.+|+++++..++
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 108 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG 108 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999998765
No 54
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.47 E-value=2.7e-13 Score=91.07 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028316 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
....+++.+|.++...|++++|+..|++++...+. ...++.++|.++...|++++|+.+++++++.. +
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~ 81 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQLE------P 81 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC------T
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------C
Confidence 35667899999999999999999999999986443 46789999999999999999999999999875 5
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
....+++++|.+|...|++++|+.+|+++++..+.
T Consensus 82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 56789999999999999999999999999987653
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=6e-13 Score=98.23 Aligned_cols=106 Identities=14% Similarity=0.090 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-Ccch
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE-YSGS 176 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~ 176 (210)
.+++++|.++...|++++|+.+|++++.+.+. ...++.++|.++...|++++|+.+++++++....... ....
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 116 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY 116 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 36777999999999999999999999985443 7889999999999999999999999999987621000 0012
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+.++.++|.++...|++++|+.+|++++++.++
T Consensus 117 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 117 AIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 367999999999999999999999999987543
No 56
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.46 E-value=6.6e-13 Score=96.78 Aligned_cols=105 Identities=16% Similarity=0.027 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG------ 171 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~------ 171 (210)
.+++++|.++...|++++|+.+|++++.+.+. ...+++++|.++...|++++|+.+|+++++......
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 111 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 47899999999999999999999999997544 567899999999999999999999999998764322
Q ss_pred ----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 172 ----EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 172 ----~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..+....+++++|.+|..+|++++|+.+|++++++.+
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 3345678999999999999999999999999998765
No 57
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.46 E-value=9.5e-13 Score=96.30 Aligned_cols=98 Identities=18% Similarity=0.203 Sum_probs=80.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028316 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 179 (210)
...+|.++..+|++++|+..|++++++.+. ...++.++|.++...|++++|+.+|++++++. |....+
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------P~~~~a 124 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPN------NVDCLEACAEMQVCRGQEKDALRMYEKILQLE------ADNLAA 124 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHH
Confidence 455999999999999999999999997655 57889999999999999999999999999875 333444
Q ss_pred HHHH-----------------------------------HHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 180 YGAI-----------------------------------ADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 180 ~~~l-----------------------------------g~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
++++ |.++...|++++|+.+|++++++.++
T Consensus 125 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 125 NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4444 44555566789999999999987664
No 58
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.46 E-value=1.3e-12 Score=104.06 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC----------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----------DPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~----------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
...+..+..+|..++..|+|++|+..|++++.+.+... ..+....++.++|.+|..+|++++|+.+++++
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34566788999999999999999999999999766531 34556789999999999999999999999999
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+++. +....+++++|.+|..+|++++|+.+|++++++.++
T Consensus 300 l~~~------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 300 LEID------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp HTTC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhC------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 8864 667899999999999999999999999999988664
No 59
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=7.3e-13 Score=97.54 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 97 LLSRLKTGKNFLRN-----------QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 165 (210)
Q Consensus 97 ~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 165 (210)
..+++.+|.++..+ |++++|+..|++++++.+. ...++.++|.++...|++++|+..|+++++
T Consensus 73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------YAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 44678899999999 9999999999999997554 567889999999999999999999999988
Q ss_pred HHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 166 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 166 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+. ....++.++|.+|...|++++|+.+|+++++..++
T Consensus 147 ~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 183 (217)
T 2pl2_A 147 LE-------DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183 (217)
T ss_dssp HC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred cc-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 73 34678899999999999999999999999987664
No 60
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-12 Score=88.99 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
.+..++.+|..++..|++++|+..|++++.+.+ +......++.++|.++...|++++|+.+++++++.. +.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDA---TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD------GG 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------SC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC------cc
Confidence 456789999999999999999999999998543 233347899999999999999999999999999874 55
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 176 STEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
...+++++|.+|..+|++++|+.+|+++++..++
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 6789999999999999999999999999987654
No 61
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.45 E-value=4e-13 Score=89.23 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=75.9
Q ss_pred hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q 028316 109 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 188 (210)
Q Consensus 109 ~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 188 (210)
.+|++++|+.+|++++++. .+.+....++.++|.++...|++++|+.+|+++++.. |....+++++|.+|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF------PNHQALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCchHHHHHHHHHHH
Confidence 4688999999999999851 0134478899999999999999999999999999885 666889999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhcc
Q 028316 189 ELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 189 ~~g~~~~A~~~~~~al~~~~~ 209 (210)
.+|++++|+.+++++++..++
T Consensus 73 ~~g~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETSD 93 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999987654
No 62
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.44 E-value=3.8e-13 Score=87.48 Aligned_cols=99 Identities=17% Similarity=0.177 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc--h
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--S 176 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~ 176 (210)
+++.+|.++...|++++|+.+|++++++.+. ...++.++|.++...|++++|+.+++++++.. +. .
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------~~~~~ 75 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVDCYNYVINVI------EDEYN 75 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS------CCTTC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------cccch
Confidence 4677899999999999999999999997543 45688999999999999999999999998874 44 6
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhcc
Q 028316 177 TEAYGAIADCYTEL-GDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~ 209 (210)
..++.++|.++..+ |++++|+++++++++..+.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 78999999999999 9999999999999987664
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=3.3e-12 Score=91.02 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=96.9
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
.+.++..|++++...+. ...++..+|.+|..+|++++|+..+.+++...+. ...++..
T Consensus 21 ~~~A~~~~~~al~~~p~----------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 78 (184)
T 3vtx_A 21 FDGAIRAYKKVLKADPN----------------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------SAEAYYI 78 (184)
T ss_dssp HHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch------hHHHHHH
Confidence 44455556666654432 2446888999999999999999999998886444 5667888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+|.++...++++.|...++++++.. +....++..+|.+|..+|++++|+.+|++++++.+.
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~ 139 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALN------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG 139 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence 9999999999999999999998775 666789999999999999999999999999988664
No 64
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.44 E-value=3.2e-12 Score=84.53 Aligned_cols=101 Identities=27% Similarity=0.476 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..+++.+|.++...|++++|+..+++++...+. ...++..+|.++...|++++|+.+++++++.. +..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~ 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PNN 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------Ccc
Confidence 457888999999999999999999999986443 45688999999999999999999999998874 455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..++..+|.+|...|++++|..+++++++..+.
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 77 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 688999999999999999999999999987654
No 65
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=2.5e-12 Score=96.83 Aligned_cols=105 Identities=15% Similarity=0.037 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028316 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 172 (210)
++....+++.+|.++...|++++|+..|++++.+.+. ...++..+|.++...|++++|+.+|+++++..
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----- 107 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD----- 107 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----
Confidence 3446778899999999999999999999999997543 46789999999999999999999999999875
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+....++..+|.+|...|++++|+.+|+++++..++
T Consensus 108 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (275)
T 1xnf_A 108 -PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143 (275)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 555689999999999999999999999999987654
No 66
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=1.6e-11 Score=96.94 Aligned_cols=115 Identities=11% Similarity=-0.009 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 173 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 173 (210)
...+.++..+|.++...|++++|...+++++.+.+..++......++.++|.++...|++++|+.++++++++.+..++.
T Consensus 50 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 129 (373)
T 1hz4_A 50 YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 129 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 34556778899999999999999999999999999988888888889999999999999999999999999988776654
Q ss_pred --cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 174 --SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 174 --~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+....++.++|.++...|++++|..++++++++.+
T Consensus 130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 55677888999999999999999999999987754
No 67
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=6.2e-13 Score=106.22 Aligned_cols=101 Identities=8% Similarity=0.013 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028316 97 LLSRLKTGKNFLRNQD-LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~-~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
..+++++|.++..+|+ +++|+..|++++.+.++ ...+++++|.++..+|++++|+.+|++++++. +.
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld------P~ 198 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQVWHHRRVLVEWLRDPSQELEFIADILNQD------AK 198 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------TT
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------cc
Confidence 4467888888888886 88998888888887655 57788888888888888888888888888875 66
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 176 STEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
...+|+++|.++..+|++++|+.+|++++++.+.
T Consensus 199 ~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 199 NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 7788888888888888888888888888877553
No 68
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.40 E-value=1.2e-11 Score=101.54 Aligned_cols=109 Identities=13% Similarity=-0.017 Sum_probs=97.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCCcc
Q 028316 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNV-K-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSG 175 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~ 175 (210)
....+..+..+|+|++|+..|++++++.++. + +++..+.+++++|.+|..+|+|++|..++++++++.++. .+++.
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 3455666889999999999999999998875 3 557789999999999999999999999999999998874 46677
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 176 STEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.+..++++|.+|..+|++++|...|++|+++.+
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~ 424 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL 424 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999864
No 69
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.40 E-value=6.5e-12 Score=89.08 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHHHHHhCCC
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGAS-LQRQGKY--REAIKYHSMVLQISEREGEY 173 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~-~~~~~~~--~~A~~~~~~al~~~~~~~~~ 173 (210)
..+++.+|.++...|++++|+.+|++++.+.+. ...++.++|.+ +...|++ ++|+.+++++++..
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~------ 111 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALATVLYYQASQHMTAQTRAMIDKALALD------ 111 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC------
Confidence 346889999999999999999999999998765 46688999999 8899999 99999999999875
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+....+++++|.+|...|++++|+.+|+++++..++
T Consensus 112 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 112 SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 566789999999999999999999999999988764
No 70
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.39 E-value=1.5e-11 Score=101.08 Aligned_cols=114 Identities=11% Similarity=-0.066 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE- 170 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~- 170 (210)
...+.++.++|.+|..+|+|++|+.++++++++.++. .+++..+.+++++|.+|..+|+|++|..++++|+++....
T Consensus 348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l 427 (490)
T 3n71_A 348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH 427 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 4567788999999999999999999999999999875 3667889999999999999999999999999999999874
Q ss_pred -CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 171 -GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 171 -~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.+++..+....+++.++.+++.+++|...|.++.+.+
T Consensus 428 G~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 428 GPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788899999999999999999999999998755
No 71
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=3.2e-12 Score=103.91 Aligned_cols=114 Identities=15% Similarity=0.015 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 172 (210)
.+..++.+|.++..+|++++|+.+|++|+++.+.... .+....++.++|.+|..+|++++|+.++++++++.+....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4556788999999999999999999999999876533 2345678999999999999999999999999999887544
Q ss_pred C--cchHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhhcc
Q 028316 173 Y--SGSTEAYGAIADCYTEL--GDLERAARFYDKYISRLES 209 (210)
Q Consensus 173 ~--~~~~~~~~~lg~~y~~~--g~~~~A~~~~~~al~~~~~ 209 (210)
. ...+.++.++|.++... +++++|+.+|++++++.++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~ 170 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK 170 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Confidence 2 34677888888877665 5799999999999988654
No 72
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.6e-11 Score=91.30 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC--------------------ChHHHHHHHHHHHHHHHHcCCHHHH
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK--------------------DPIEEKKAARGLGASLQRQGKYREA 156 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~--------------------~~~~~~~~~~~lg~~~~~~~~~~~A 156 (210)
..++..+|.++...|++++|+.+|++++.+.+... ..+....++..+|.++...|++++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 55556666666666666666666666665432211 3344455556666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 157 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 157 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+.+++++++.. +....++.++|.+|...|++++|+.+++++++..+
T Consensus 159 ~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 159 VKAYTEMIKRA------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcC------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 66666665553 33445666666666666666666666666665543
No 73
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.3e-11 Score=91.78 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 173 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 173 (210)
+....++..+|.++...|++++|+..|++++.+.+. ...++.++|.++...|++++|+.+++++++..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------ 203 (258)
T 3uq3_A 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKD------ 203 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------
Confidence 345667899999999999999999999999997554 46789999999999999999999999998875
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+....++..+|.+|..+|++++|..+|++++++.
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 5667899999999999999999999999999887
No 74
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.37 E-value=2e-11 Score=98.79 Aligned_cols=104 Identities=10% Similarity=0.057 Sum_probs=92.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCCcchHHHH
Q 028316 105 KNFLRNQDLEKAFTEFKAALELAQNV-K-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAY 180 (210)
Q Consensus 105 ~~~~~~~~~~~A~~~~~~al~l~~~~-~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~ 180 (210)
......|+|++|+..|++++++.++. + +++..+.+++++|.+|..+|+|++|+.++++++++.++. .+++..+..+
T Consensus 306 ~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 306 RRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 33445789999999999999998874 3 557788999999999999999999999999999999874 4567889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 181 GAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 181 ~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+++|.+|..+|++++|+.+|++|+++.+
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999864
No 75
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.37 E-value=3.6e-12 Score=97.57 Aligned_cols=101 Identities=11% Similarity=0.069 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
+..+..+|..++..|+|++|+..|++++.+.+. ...++.++|.+|...|++++|+..+++++++. +..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~ 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELD------GQS 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------TTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCC
Confidence 346788999999999999999999999997554 56789999999999999999999999998764 667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..+++++|.+|..+|++++|+.+|++++++.++
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 889999999999999999999999999987653
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=2.6e-11 Score=95.74 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=111.0
Q ss_pred HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh--HHHHHHHH
Q 028316 64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEEKKAAR 141 (210)
Q Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~--~~~~~~~~ 141 (210)
..+...+.+++...+. .++....+.+..++|.++...|++++|+.++++++.+.+..++. +....++.
T Consensus 70 ~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 139 (373)
T 1hz4_A 70 TRSLALMQQTEQMARQ----------HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139 (373)
T ss_dssp HHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh----------cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHH
Confidence 4444555555555544 45555667788999999999999999999999999999987765 66778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 142 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
++|.++...|++++|..++++++++....++.. ...++.++|.++...|++++|..++++++.+.+
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999876554333 567899999999999999999999999987643
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=2.2e-11 Score=85.93 Aligned_cols=98 Identities=21% Similarity=0.243 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+.+++++++.. +....
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~ 145 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVPLLIKVAEANPI------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR------PNEGK 145 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------ccchH
Confidence 3455555666666666666666665554322 23455566666666666666666666665543 33355
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 179 AYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
++..+|.++...|++++|..+++++++..+
T Consensus 146 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 146 VHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 666666666666666666666666665544
No 78
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.35 E-value=6.9e-12 Score=94.52 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHH
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR--------QGKYREAIKYHSMVLQISE 168 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~--------~~~~~~A~~~~~~al~~~~ 168 (210)
..+++.+|.+|+.+|++++|+..|++++++.+. .+....+++.+|.++.. .|++++|+..|+++++...
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQI---DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC---CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 457899999999999999999999999997654 23356789999999999 9999999999999988752
Q ss_pred HhCCCcchHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 169 REGEYSGSTEAY--------------GAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 169 ~~~~~~~~~~~~--------------~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+.+....+. +.+|.+|...|++++|+..|+++++..++
T Consensus 129 ---~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 129 ---NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp ---TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 222333343 89999999999999999999999987654
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=1.2e-11 Score=87.22 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=99.1
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
...++..+.+.+...+. ...++..+|.++...|++++|+.+++++++..+. ...++..
T Consensus 24 ~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~ 81 (186)
T 3as5_A 24 YSQAVMLLEQVYDADAF----------------DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD------NVKVATV 81 (186)
T ss_dssp HHHHHHHHTTTCCTTSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHH
Confidence 34455666776665432 2446888999999999999999999999987443 4678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+|.++...|++++|+.+++++++.. +....++..+|.++...|++++|+.+++++++..+.
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 142 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEAN------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999998874 556788999999999999999999999999987543
No 80
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.34 E-value=5.7e-12 Score=97.16 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP---IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 173 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 173 (210)
..++..+|.++...|++++|+.++++++.+.+..++. +....++.++|.++...|++++|+.+++++++..
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------ 266 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI------ 266 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC------
Confidence 4567889999999999999999999999988765544 2335688899999999999999999999998875
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+....++.++|.+|..+|++++|..+|++++++.++
T Consensus 267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 455688999999999999999999999999887654
No 81
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.34 E-value=1.6e-11 Score=81.97 Aligned_cols=100 Identities=27% Similarity=0.466 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
..+..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+.+++++++.. +...
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~ 103 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PRSA 103 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------TTCH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCh
Confidence 35778899999999999999999999986443 35678899999999999999999999998874 4456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 178 EAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.++..+|.++...|++++|..+++++++..+.
T Consensus 104 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 104 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 78999999999999999999999999987654
No 82
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.34 E-value=4.2e-12 Score=99.82 Aligned_cols=111 Identities=18% Similarity=0.213 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC-----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028316 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-----------PIEEKKAARGLGASLQRQGKYREAIKYHS 161 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~-----------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 161 (210)
....+..+..+|..++..++|++|+..|++++.+.+.... ......+++++|.+|..+|+|++|+.+|+
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4456778899999999999999999999999987543100 00011488999999999999999999999
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 162 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 162 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+++++. +....+++++|.+|..+|++++|+.+|++++++.++
T Consensus 255 ~al~~~------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 255 IVLTEE------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 999885 667889999999999999999999999999887653
No 83
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.34 E-value=1.8e-11 Score=89.03 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
++..++.+|..++..|++++|+..|++++. . .+.+++++|.++...|++++|+.+|+++++.. +.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~ 69 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQD------P---HSRICFNIGCMYTILKNMTEAEKAFTRSINRD------KH 69 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cc
Confidence 455678999999999999999999999852 1 35689999999999999999999999999885 56
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 176 STEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
...+++++|.+|..+|++++|+.+|+++++..+.
T Consensus 70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence 6789999999999999999999999999986553
No 84
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.32 E-value=9.4e-11 Score=94.17 Aligned_cols=136 Identities=11% Similarity=0.075 Sum_probs=118.0
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
.+.+++.+...+..... .++......+...+|.++...|++++|+.++++++...+..++....+.++.+
T Consensus 71 ~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (434)
T 4b4t_Q 71 KDKLREFIPHSTEYMMQ----------FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK 140 (434)
T ss_dssp HHHHHHHHHHTHHHHHT----------SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 45555566666665544 44445556677889999999999999999999999999999888888999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+|.+|...|+|++|+.++++++......++.+....++..+|.+|..+|++++|..++++++.+.+
T Consensus 141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999888888888999999999999999999999999999987653
No 85
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.31 E-value=1.2e-11 Score=98.78 Aligned_cols=105 Identities=13% Similarity=0.072 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhC
Q 028316 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQISEREG 171 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~ 171 (210)
++....++..+|.++...|++++|+..|++++.+.+. ...+++++|.++..+|+ +++|+.+|++++++.
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~---- 162 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---- 162 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC----
Confidence 4445667889999999999999999999999998665 67899999999999997 999999999999986
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 172 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+....+|+++|.++..+|++++|+.+|++++++.++
T Consensus 163 --P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~ 198 (382)
T 2h6f_A 163 --PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK 198 (382)
T ss_dssp --TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred --CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 778899999999999999999999999999988664
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.31 E-value=4e-11 Score=79.97 Aligned_cols=99 Identities=27% Similarity=0.480 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
+++.+|.++...|++++|+..+++++...+. ...++..+|.++...|++++|+.+++++++.. +....
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~ 70 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PRSAE 70 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC------CCchH
Confidence 5678899999999999999999999886433 35678899999999999999999999998774 44567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 179 AYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
++..+|.++...|++++|+.+++++++..+.
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999999987553
No 87
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.30 E-value=2e-11 Score=90.19 Aligned_cols=100 Identities=21% Similarity=0.253 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
.++..+|.++...|++++|+.++++++.+.+. ...++..+|.++...|++++|+.+++++++.. +...
T Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~ 193 (243)
T 2q7f_A 126 DLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------DTEARFQFGMCLANEGMLDEALSQFAAVTEQD------PGHA 193 (243)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC------TTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cccH
Confidence 35788899999999999999999999886543 45678899999999999999999999998774 4556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 178 EAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.++..+|.+|...|++++|..+|+++++..++
T Consensus 194 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 194 DAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 78999999999999999999999999987654
No 88
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.30 E-value=6.2e-12 Score=94.74 Aligned_cols=100 Identities=13% Similarity=0.179 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
++..+|.++...|++++|+.+++++++. + .++.....++..+|.++...|++++|+.+|+++++.. +....
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~~~ 109 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSK-V--NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD------TTRLD 109 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTT-S--CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCTH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc-c--CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC------cccHH
Confidence 4566677777777777777777777662 1 2333345566777777777777777777777776654 34446
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 179 AYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
++..+|.+|...|++++|+.+|+++++..
T Consensus 110 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 110 MYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence 67777777777777777777777666543
No 89
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.30 E-value=1.9e-11 Score=96.11 Aligned_cols=101 Identities=20% Similarity=0.211 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..++..+|.++...|++++|+..|++++++.+. ...++.++|.++...|++++|+.+|++++++. +..
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~ 280 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE------DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ------PGF 280 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCc
Confidence 446788999999999999999999999997554 46789999999999999999999999999885 566
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..++.++|.+|..+|++++|+.+|++++++.++
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 889999999999999999999999999988754
No 90
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.30 E-value=2.3e-11 Score=81.97 Aligned_cols=97 Identities=13% Similarity=0.213 Sum_probs=81.6
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
+..++..|.+++...+. ...+++++|.+|..+|++++|+..|++++++.+. ...++++
T Consensus 29 ~~~A~~~~~~al~~~p~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~~ 86 (126)
T 4gco_A 29 YPTAMRHYNEAVKRDPE----------------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK------FIKGYIR 86 (126)
T ss_dssp HHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC----------------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh------hhHHHHH
Confidence 56666677777665443 3457899999999999999999999999997554 5778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 028316 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY 187 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 187 (210)
+|.++..+|++++|+..|++++++. |....++.+++.|+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~------P~~~~a~~~l~~~l 125 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVD------PSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC------cCCHHHHHHHHHhc
Confidence 9999999999999999999999986 77778888888764
No 91
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.30 E-value=1.4e-11 Score=103.00 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
.++..+|.++..+|++++|+.+|++++++.+. ...++.++|.++...|++++|+.+++++++.. +...
T Consensus 58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~ 125 (568)
T 2vsy_A 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAPE------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL------PEEP 125 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCH
Confidence 34566666666666666666666666665333 34566666666666666666666666666653 4445
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhc
Q 028316 178 EAYGAIADCYTEL---GDLERAARFYDKYISRLE 208 (210)
Q Consensus 178 ~~~~~lg~~y~~~---g~~~~A~~~~~~al~~~~ 208 (210)
.++.++|.++..+ |++++|...++++++..+
T Consensus 126 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 6666666666666 666666666666666544
No 92
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.29 E-value=3.2e-11 Score=94.82 Aligned_cols=107 Identities=13% Similarity=0.211 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH----------------------------------------H
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE----------------------------------------E 136 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~----------------------------------------~ 136 (210)
..++..+|.+|..+|++++|+..|++++.+.+....... .
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 212 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC
Confidence 446788889999999999999998888887655322110 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+.++.++|.++...|++++|+.+|+++++.. +....++.++|.+|...|++++|+.+|+++++..++
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 5578899999999999999999999998875 556788999999999999999999999999887654
No 93
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.29 E-value=6.2e-11 Score=93.01 Aligned_cols=132 Identities=20% Similarity=0.234 Sum_probs=102.3
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
...++..|.+++...+....... +.........+.+++++|.++..+|++++|+.+|++++.+.+. ...++++
T Consensus 163 ~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~ 235 (336)
T 1p5q_A 163 YKQALLQYKKIVSWLEYESSFSN-EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN------NEKGLSR 235 (336)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCS-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccCCh-HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHH
Confidence 45566667777666554211100 0001122334668899999999999999999999999998654 5778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhh
Q 028316 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA-ARFYDKYISRL 207 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A-~~~~~~al~~~ 207 (210)
+|.+|..+|++++|+.+|++++++. +....++.++|.++..+|++++| ...|.+++..+
T Consensus 236 lg~~~~~~g~~~~A~~~~~~al~l~------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQKVLQLY------PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999985 66778999999999999999999 55777777654
No 94
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.29 E-value=2.9e-11 Score=89.34 Aligned_cols=99 Identities=17% Similarity=0.237 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
.++..+|.++...|++++|+..+++++++.+. ...++..+|.++...|++++|+.+++++++.. +...
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~ 125 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDSS------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG------MENG 125 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------CCSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCCH
Confidence 34566666666666666666666666665332 34556666666666666666666666666553 3344
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 178 EAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.++..+|.++...|++++|+.+++++++..+
T Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 126 DLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 5566666666666666666666666665543
No 95
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.29 E-value=5.1e-11 Score=86.78 Aligned_cols=101 Identities=21% Similarity=0.188 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 98 LSRLKTGKNFLRN-QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 98 ~~~~~~g~~~~~~-~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
.++..+|.++... |++++|+..++++++ ....+....++.++|.++...|++++|+.+++++++.. +..
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~ 146 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ------PQF 146 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Confidence 3567788888888 888888888888877 22233356678888888888888888888888887764 445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..++..+|.++...|++++|..+++++++..+
T Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 67888888888888888888888888887655
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=1.9e-11 Score=92.11 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
...++.+|..++..|+|++|+..|++++...+. ......+++.+|.+|...|++++|+..|+++++... +.+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~ 88 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT---HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ---IDPRV 88 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTTH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC---CCchh
Confidence 446899999999999999999999999985443 333478999999999999999999999999988752 23456
Q ss_pred HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhhcc
Q 028316 177 TEAYGAIADCYTE--------LGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~--------~g~~~~A~~~~~~al~~~~~ 209 (210)
..+++.+|.+|.. .|++++|+..|+++++..++
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 7899999999999 99999999999999988764
No 97
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.29 E-value=3.2e-12 Score=88.81 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhCCCcchHHH
Q 028316 110 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY----------REAIKYHSMVLQISEREGEYSGSTEA 179 (210)
Q Consensus 110 ~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~ 179 (210)
.+.|++|+..+++++++.+. .+.++.++|.++...+++ ++|+..|++++++. |....+
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld------P~~~~A 82 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID------PKKDEA 82 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------TTCHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC------cCcHHH
Confidence 45789999999999998666 788999999999998875 59999999999996 778899
Q ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHHhhcc
Q 028316 180 YGAIADCYTELG-----------DLERAARFYDKYISRLES 209 (210)
Q Consensus 180 ~~~lg~~y~~~g-----------~~~~A~~~~~~al~~~~~ 209 (210)
++++|.+|..+| ++++|+.+|++|+++-++
T Consensus 83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 999999999885 899999999999998764
No 98
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.28 E-value=4.7e-11 Score=93.64 Aligned_cols=101 Identities=20% Similarity=0.191 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..++..+|.++...|++++|+..|++++.+.+. ...++.++|.++...|++++|+.+|++++++. +..
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~~ 284 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLWNKLGATLANGNQSEEAVAAYRRALELQ------PGY 284 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCc
Confidence 456788999999999999999999999997544 46789999999999999999999999999875 566
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..++.++|.+|...|++++|+.+|++++++.++
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 789999999999999999999999999987654
No 99
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.28 E-value=8.7e-13 Score=86.06 Aligned_cols=100 Identities=10% Similarity=0.129 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
+..++.+|.+++..|++++|+..|++++.+.+. ...++.++|.++...|++++|+.++++++++....++....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 456889999999999999999999999997554 46789999999999999999999999998875221111123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDK 202 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~ 202 (210)
..+++.+|.++..+|+++.|+..+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 78899999999999988887766554
No 100
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.28 E-value=2.9e-12 Score=105.21 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
.+..+..+|..+..+|+|++|+.+|++++++.+. ...++.++|.+|..+|++++|+.++++++++. +.
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~ 72 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELD------KK 72 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------TT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CC
Confidence 3445667788899999999999999999997554 47789999999999999999999999998874 66
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 176 STEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
...+++++|.+|..+|++++|+.+|++++++.++
T Consensus 73 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 106 (477)
T 1wao_1 73 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106 (477)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6789999999999999999999999999987654
No 101
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.27 E-value=8.1e-11 Score=85.70 Aligned_cols=101 Identities=13% Similarity=0.060 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc-c
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-G 175 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~ 175 (210)
...+..+|.++...|++++|+.+++++++..+. ...++..+|.++...|++++|+.+++++++.. + .
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~ 180 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------FPPAFKELARTKMLAGQLGDADYYFKKYQSRV------EVL 180 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------CSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Confidence 456777888888888888888888888876443 35677788888888888888888888887765 4 4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 176 STEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
....+..++.++...|+.+.|..+++.+.+..++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 181 QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 5566777888888888888888888877766543
No 102
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.27 E-value=8.3e-11 Score=81.83 Aligned_cols=100 Identities=19% Similarity=0.144 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..++..+|.++...|++++|+.++++++.+.+. ...++.++|.++...|++++|+.+|+++++.. +..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------p~~ 114 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYYRRAASNMALGKFRAALRDYETVVKVK------PHD 114 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCC
Confidence 446889999999999999999999999997544 46789999999999999999999999999875 333
Q ss_pred HHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 177 TEAY--GAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 177 ~~~~--~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..++ ..++..+...|++++|+..++++..+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 115 KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 3444 5566668899999999999999877653
No 103
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.27 E-value=4.5e-11 Score=98.05 Aligned_cols=100 Identities=8% Similarity=-0.030 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc--------CCHHHHHHHH
Q 028316 98 LSRLKTGKNFLRN---------QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ--------GKYREAIKYH 160 (210)
Q Consensus 98 ~~~~~~g~~~~~~---------~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~--------~~~~~A~~~~ 160 (210)
.++.++|.++..+ |++++|+..|++++++.+. ...+++++|.+|... |++++|+.+|
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~ 244 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAY 244 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 5789999999999 9999999999999997654 567899999999999 9999999999
Q ss_pred HHHHHHHHHhCCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 161 SMVLQISEREGEYS---GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 161 ~~al~~~~~~~~~~---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
++++++. + ....+++++|.+|..+|++++|+.+|++++++.++
T Consensus 245 ~~al~~~------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 245 AQAEKVD------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp HHHHHHC------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhC------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999885 5 67899999999999999999999999999987654
No 104
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.26 E-value=3e-11 Score=93.06 Aligned_cols=105 Identities=14% Similarity=0.161 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC---cc
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY---SG 175 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~ 175 (210)
.+..+|.++...|++++|+.++++++.+.+. ...++..+|.++...|++++|+.+++++++.....++. +.
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 234 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPE------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccH
Confidence 4666888899999999999999988886443 46788999999999999999999999999987654443 33
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 176 STEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
...++.++|.+|...|++++|+.+|+++++..++
T Consensus 235 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 4678999999999999999999999999987654
No 105
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.25 E-value=1.1e-10 Score=94.40 Aligned_cols=108 Identities=12% Similarity=0.018 Sum_probs=94.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCCcch
Q 028316 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNV-K-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGS 176 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~ 176 (210)
...-.-+..+|+|++|+..+++++++..+. + +.+....++.++|.+|..+|+|++|+.++++++++.++. .+++..
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 333445668899999999999999876654 3 456788899999999999999999999999999999874 466778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+..++++|.+|..+|++++|+.+|++|+++.+
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999864
No 106
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.25 E-value=1.2e-10 Score=86.72 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
++..+|.++...|++++|+.++++++. .+..+....++..+|.++...|++++|+.+++++++.. +....
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------~~~~~ 176 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN------RNQPS 176 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SCCHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------cccHH
Confidence 445556666666666666666666554 11122244555566666666666666666666665543 33345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 179 AYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
++..+|.+|...|++++|..+++++++.
T Consensus 177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 177 VALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5556666666666666666666555543
No 107
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.25 E-value=1e-10 Score=89.96 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..++..+|.++...|++++|+..+++++...+. ...++..+|.++...|++++|+.+++++++.. +..
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~ 239 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPD------DAQLWNKLGATLANGNRPQEALDAYNRALDIN------PGY 239 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCC
Confidence 456888999999999999999999999987543 46788999999999999999999999998875 556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..++..+|.+|...|++++|+.+|+++++..+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 789999999999999999999999999987654
No 108
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.24 E-value=6.8e-11 Score=88.06 Aligned_cols=103 Identities=15% Similarity=0.185 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..++..+|.++...|++++|+..+++++++.+. ...++..+|.++...|++++|+.+++++++ .+..+..
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 140 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSR------NARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPER 140 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCccc
Confidence 456888999999999999999999999987543 467889999999999999999999999976 2234667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..++..+|.+|...|++++|+.+++++++..+.
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN 173 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 889999999999999999999999999987653
No 109
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.24 E-value=1.5e-10 Score=96.69 Aligned_cols=107 Identities=19% Similarity=0.165 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
.++..+|.++...|++++|+..|++++++.++.+..+. ...++..+|.++...|++++|+..|+++++.. +..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~ 549 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS------TND 549 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------SCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCC
Confidence 45788899999999999999999999998877554444 37789999999999999999999999998874 556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
..++..+|.+|...|++++|..+|++++++.+++
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 7899999999999999999999999999887653
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.24 E-value=1.9e-10 Score=96.12 Aligned_cols=101 Identities=17% Similarity=0.097 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..++..+|.++..+|++++|+.+|++++++.+. ...++.++|.++...|++++|+.+++++++.. +..
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~ 90 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAA------PEH 90 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCC
Confidence 456899999999999999999999999996544 57789999999999999999999999999885 566
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..++.++|.+|...|++++|+.+|+++++..++
T Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 123 (568)
T 2vsy_A 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 889999999999999999999999999987654
No 111
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.22 E-value=4.8e-11 Score=94.66 Aligned_cols=99 Identities=19% Similarity=0.296 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..++..+|.++...|++++|+..|++++.+.+. ...++.++|.++...|++++|+.+|+++++.. +..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~ 304 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKGSVAEAEDCYNTALRLC------PTH 304 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC------TTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------ccc
Confidence 345667777777777888887777777764332 34567777777777777777777777776653 444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
..++.++|.++...|++++|+..|+++++..
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5566666666666666666666666666543
No 112
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.22 E-value=6.7e-11 Score=93.84 Aligned_cols=99 Identities=18% Similarity=0.268 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
++..+|.++...|++++|+..|++++.+.+. ...++.++|.++...|++++|+..|+++++.. +....
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~ 272 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPN------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ------PHFPD 272 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC------SSCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHH
Confidence 4566677777777777777777777665432 45677788888888888888888888887653 55667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 179 AYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
++.++|.++...|++++|+.+|+++++..++
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 303 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 8888888888888888888888888876553
No 113
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.21 E-value=1e-10 Score=88.05 Aligned_cols=108 Identities=19% Similarity=0.119 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCC
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK---YREAIKYHSMVLQISEREGEY 173 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~~~~ 173 (210)
..+++.+|...+..+++++|+..|++++++.+. ...++..+|.++...++ +++|+.++++++++....++.
T Consensus 142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 215 (272)
T 3u4t_A 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKPN------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc
Confidence 446788994445566999999999999997654 46788999999999999 999999999999987544332
Q ss_pred --cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028316 174 --SGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 174 --~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
.....++..+|.+|...|++++|+.+|++++++.+++
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 216 YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence 2245789999999999999999999999999987754
No 114
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.21 E-value=6e-10 Score=89.46 Aligned_cols=146 Identities=10% Similarity=0.029 Sum_probs=116.3
Q ss_pred HHHHHhcccccccccccccCCCCccccc-cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIV-DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 141 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 141 (210)
+..+++.|.+.+...+............ ........++..+|.+|..+|++++|++++.+++.+.+..++......+..
T Consensus 20 y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (434)
T 4b4t_Q 20 YNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKT 99 (434)
T ss_dssp HHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 4445555666655544322211111111 112233456889999999999999999999999999998887777778889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 142 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.+|.++...|++++|+.++++++.+..+.++....+.++.++|.+|...|++++|...+++++....
T Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 100 LIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp HHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888888999999999999999999999999999887643
No 115
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.21 E-value=1e-10 Score=78.78 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 135 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..+.++.++|.+++..|+|++|+.+|++++++. |..+.++.++|.+|..+|++++|+.+|++++++.+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 367788999999999999999999999999985 66788999999999999999999999999998765
No 116
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.21 E-value=1.5e-10 Score=72.51 Aligned_cols=84 Identities=26% Similarity=0.442 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
....++.+|.++...+++++|+.+|++++.+.+. ...++.++|.++...|++++|+.++++++++. +.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------p~ 75 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PN 75 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------CC
Confidence 4557889999999999999999999999987543 46688999999999999999999999999875 56
Q ss_pred hHHHHHHHHHHHHHcC
Q 028316 176 STEAYGAIADCYTELG 191 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g 191 (210)
...++.++|.++..+|
T Consensus 76 ~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 6788999999988765
No 117
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.21 E-value=1.7e-10 Score=89.63 Aligned_cols=100 Identities=20% Similarity=0.216 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
+..++.+|..++..|++++|+..|+++++..+. ...++..+|.++...|++++|+.+++++++.. +..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~ 70 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD------NYIAYYRRATVFLAMGKSKAALPDLTKVIALK------MDF 70 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCc
Confidence 456889999999999999999999999996544 46789999999999999999999999999874 556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..++..+|.+|...|++++|+.+|+++++..+
T Consensus 71 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 71 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 78999999999999999999999999988755
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.21 E-value=1.5e-10 Score=85.43 Aligned_cols=106 Identities=8% Similarity=-0.045 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
..++.+|..++..|+|++|+..|++++...+. ......+++.+|.+|...|++++|+..|+++++... +.+...
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P---~~~~~~ 78 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP---THPNID 78 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCcHH
Confidence 46788999999999999999999999986543 333567899999999999999999999999987752 233455
Q ss_pred HHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhhcc
Q 028316 178 EAYGAIADCYTE------------------LGDLERAARFYDKYISRLES 209 (210)
Q Consensus 178 ~~~~~lg~~y~~------------------~g~~~~A~~~~~~al~~~~~ 209 (210)
.+++.+|.+|.. .|++++|+..|+++++..++
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~ 128 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN 128 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence 689999999886 57999999999999987764
No 119
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.20 E-value=3.4e-10 Score=87.98 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=89.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028316 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 179 (210)
...+|.++...|++++|+..+++++...+. ++.....++..+|.++...|++++|+.+++++++.. +....+
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~ 308 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME------PDNVNA 308 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------cccHHH
Confidence 345699999999999999999999997654 445556678899999999999999999999999874 666789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 180 YGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+..+|.+|...|++++|..+|++++++.++
T Consensus 309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999988765
No 120
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.20 E-value=9e-12 Score=106.53 Aligned_cols=99 Identities=20% Similarity=0.141 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..+++++|.++..+|++++|+..|++++++.+. ...+++++|.++..+|++++ +.+|++++++. +..
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~------P~~ 533 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG------ELAPKLALAATAELAGNTDE-HKFYQTVWSTN------DGV 533 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC------TTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC------Cch
Confidence 446888999999999999999999999997655 46788899999999999999 99999998875 667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..+++++|.+|..+|++++|+.+|++++++.+
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 565 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSR 565 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCc
Confidence 78999999999999999999999999987654
No 121
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.19 E-value=2e-10 Score=90.06 Aligned_cols=100 Identities=19% Similarity=0.190 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
..++.+|.++...|++++|+..|++++++.+. ...++..+|.++...|++++|+.+|+++++.. +...
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~~~ 132 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK------HMEAWQYLGTTQAENEQELLAISALRRCLELK------PDNQ 132 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC------CCCH
Confidence 35788999999999999999999999986443 56789999999999999999999999999875 5667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 178 EAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.++..+|.+|...|++++|+.+++++++..+.
T Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 133 TALMALAVSFTNESLQRQACEILRDWLRYTPA 164 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 89999999999999999999999999987653
No 122
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.18 E-value=8.3e-11 Score=90.47 Aligned_cols=107 Identities=10% Similarity=0.126 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc-
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG- 175 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~- 175 (210)
..++..+|.++...|++++|+..+++++.+.+. ...++..+|.++...|++++|+.+++++++......+...
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 279 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPG------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE 279 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence 346788999999999999999999999997543 4668899999999999999999999999988743221111
Q ss_pred -----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 176 -----STEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 176 -----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
...++..+|.++..+|++++|...++++++..++
T Consensus 280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 6789999999999999999999999998887653
No 123
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.18 E-value=2.6e-10 Score=85.72 Aligned_cols=107 Identities=18% Similarity=0.176 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-----
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG----- 171 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~----- 171 (210)
..++..+|.++...|++++|+.+|++++.+.+. ...++.++|.++...|++++|+.+|+++++......
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLW 150 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHH
Confidence 346788888999999999999999998887544 356788889999999999999988888876532100
Q ss_pred -------------------------------------------------------CCc----chHHHHHHHHHHHHHcCC
Q 028316 172 -------------------------------------------------------EYS----GSTEAYGAIADCYTELGD 192 (210)
Q Consensus 172 -------------------------------------------------------~~~----~~~~~~~~lg~~y~~~g~ 192 (210)
..+ ....++..+|.+|...|+
T Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 151 LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC
Confidence 000 115778899999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 028316 193 LERAARFYDKYISRLES 209 (210)
Q Consensus 193 ~~~A~~~~~~al~~~~~ 209 (210)
+++|+.+|+++++..++
T Consensus 231 ~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 231 LDSATALFKLAVANNVH 247 (275)
T ss_dssp HHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHhCCch
Confidence 99999999999887653
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.18 E-value=1.6e-11 Score=85.38 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=66.6
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028316 132 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 132 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
..+....+++++|.++...|++++|+.+|++++++. |..+.+++++|.+|..+|++++|+.+|++++++.+++
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 345588899999999999999999999999999886 7788999999999999999999999999999987653
No 125
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.18 E-value=2e-10 Score=92.50 Aligned_cols=103 Identities=20% Similarity=0.223 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 173 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 173 (210)
+..+..++.+|..++..|++++|+..|++++...+. ...+++.+|.++...|++++|+.+|+++++..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------ 90 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD------NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK------ 90 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------
Confidence 345667899999999999999999999999986443 47789999999999999999999999999875
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+....++..+|.+|...|++++|+.+|+++++..+
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 125 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 55678999999999999999999999999987654
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.17 E-value=6e-10 Score=74.38 Aligned_cols=88 Identities=10% Similarity=0.002 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..++.++|.++..+|++++|+..|++++.+.+. ...+++++|.++...|++++|+.+|++++++..+..+.+..
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~ 111 (126)
T 3upv_A 38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 111 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhH
Confidence 457899999999999999999999999997554 57789999999999999999999999999998766666777
Q ss_pred HHHHHHHHHHHHHc
Q 028316 177 TEAYGAIADCYTEL 190 (210)
Q Consensus 177 ~~~~~~lg~~y~~~ 190 (210)
..+...++.+...+
T Consensus 112 ~~~~~~l~~~~~~l 125 (126)
T 3upv_A 112 REIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 78888888876553
No 127
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.17 E-value=6.8e-11 Score=96.96 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028316 96 ELLSRLKTGKNFLRNQDL-EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
.+..++.+|.++...|++ ++|+.+|++++++.+. ...+++++|.+|...|++++|+.+|++++++. +
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------p 168 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC------K 168 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC------C
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------C
Confidence 456789999999999999 9999999999997554 57799999999999999999999999998874 4
Q ss_pred chHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhcc
Q 028316 175 GSTEAYGAIADCYTEL---------GDLERAARFYDKYISRLES 209 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~---------g~~~~A~~~~~~al~~~~~ 209 (210)
. ..++.++|.+|..+ |++++|+.+|++++++.++
T Consensus 169 ~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 211 (474)
T 4abn_A 169 N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL 211 (474)
T ss_dssp C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence 4 58999999999999 9999999999999988664
No 128
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.16 E-value=4.4e-11 Score=102.29 Aligned_cols=100 Identities=19% Similarity=0.143 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..+++.+|.++..+|++++|+..|++++++.+. ...+++++|.++...|++++|+..|++++++. +..
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------P~~ 500 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGW------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTF------PGE 500 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------TTC
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Confidence 346889999999999999999999999998665 57799999999999999999999999999986 666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..+++++|.+|..+|++++ +.+|++++++.++
T Consensus 501 ~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~ 532 (681)
T 2pzi_A 501 LAPKLALAATAELAGNTDE-HKFYQTVWSTNDG 532 (681)
T ss_dssp SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence 7899999999999999999 9999999987654
No 129
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.16 E-value=5.9e-10 Score=91.03 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028316 95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
..+..+..+|..++..|+|++|+..|++++...+ ...++.++|.++...|++++|+..++++++.. |
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p 70 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-------DPVFYSNLSACYVSVGDLKKVVEMSTKALELK------P 70 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------S
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-------cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC------h
Confidence 4567889999999999999999999999999642 26789999999999999999999999999874 6
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
....++..+|.+|..+|++++|+..|++++...+
T Consensus 71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 104 (514)
T 2gw1_A 71 DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104 (514)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 6778999999999999999999999999987654
No 130
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.13 E-value=3.7e-10 Score=81.53 Aligned_cols=129 Identities=16% Similarity=0.196 Sum_probs=90.7
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
...++..|.+++...+....................++.++|.++..+|++++|+.++++++.+.+. ...++++
T Consensus 54 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~ 127 (198)
T 2fbn_A 54 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN------NVKALYK 127 (198)
T ss_dssp HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc------cHHHHHH
Confidence 5566666777666544311000000000011112467899999999999999999999999997543 5678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 028316 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA-RFYDKY 203 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~-~~~~~a 203 (210)
+|.++...|++++|+.+|++++++. +....++..++.++..+++.+++. ..|.+.
T Consensus 128 lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 128 LGVANMYFGFLEEAKENLYKAASLN------PNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999885 666789999999999999888887 344433
No 131
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.13 E-value=4.3e-10 Score=82.95 Aligned_cols=106 Identities=15% Similarity=0.074 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH------------------cCCHHHHHHH
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR------------------QGKYREAIKY 159 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~------------------~~~~~~A~~~ 159 (210)
.+++.+|.+|+.+|++++|+..|+++++..+. ......+++.+|.++.. .|++++|+..
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~---~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 118 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD 118 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH
Confidence 46889999999999999999999999997665 23345678889988876 5789999999
Q ss_pred HHHHHHHHHHhCCCcchH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 160 HSMVLQISEREGEYSGST--------------EAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 160 ~~~al~~~~~~~~~~~~~--------------~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
|+++++.... .+... .....+|.+|...|++++|+..|+++++..++
T Consensus 119 ~~~~l~~~P~---~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 119 FSKLVRGYPN---SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHHTTCTT---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHCcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 9999876522 11111 22367899999999999999999999988754
No 132
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.13 E-value=6.1e-10 Score=92.90 Aligned_cols=106 Identities=13% Similarity=0.144 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch-
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS- 176 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~- 176 (210)
..+..+|.+|...|++++|+..|++++++.+. ...++..+|.++...|++++|+.+|+++++...+.+..+..
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 45778899999999999999999999886443 45678999999999999999999999999987765555553
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..++..+|.+|...|++++|+..|+++++..++
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 789999999999999999999999999987653
No 133
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.12 E-value=2.3e-10 Score=75.28 Aligned_cols=80 Identities=13% Similarity=0.157 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHH
Q 028316 116 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER 195 (210)
Q Consensus 116 A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 195 (210)
|+..|++++...+. ...+++++|.++...|++++|+.+|+++++.. +....+++++|.+|...|++++
T Consensus 4 a~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~ 71 (115)
T 2kat_A 4 ITERLEAMLAQGTD------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD------PTYSVAWKWLGKTLQGQGDRAG 71 (115)
T ss_dssp HHHHHHHHHTTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHcCCHHH
Confidence 44455555543222 33455556666666666666666666655543 3344555556666666666666
Q ss_pred HHHHHHHHHHhh
Q 028316 196 AARFYDKYISRL 207 (210)
Q Consensus 196 A~~~~~~al~~~ 207 (210)
|+.+|++++++.
T Consensus 72 A~~~~~~al~~~ 83 (115)
T 2kat_A 72 ARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 666666555543
No 134
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.12 E-value=1.4e-09 Score=75.61 Aligned_cols=103 Identities=13% Similarity=0.087 Sum_probs=79.1
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-CChHHHHHHH-
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIEEKKAA- 140 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-~~~~~~~~~~- 140 (210)
++.++..|.+++.+.+.... . + .....+..+.++.++|.++..+|+|++|+..|+++++++.+. ...+....++
T Consensus 27 ~eeAi~~Y~kAL~l~p~~~~-~--~-a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~ 102 (159)
T 2hr2_A 27 YDEAAANCRRAMEISHTMPP-E--E-AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWI 102 (159)
T ss_dssp HHHHHHHHHHHHHHHTTSCT-T--S-CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcc-h--h-hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHH
Confidence 67788888888887765111 0 1 122333456689999999999999999999999999983322 2223366777
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028316 141 ---RGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 141 ---~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
+++|.++..+|++++|+..|++++++...
T Consensus 103 ~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 103 SAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999854
No 135
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.12 E-value=2.8e-10 Score=92.98 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhCCCc
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---QGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
.++..+|.++...|++++|+.+|++++.+.+..........++.++|.++.. .|++++|+.+++++++.. +
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~------~ 446 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD------P 446 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC------T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC------c
Confidence 3578889999999999999999999999887754433334588999999999 999999999999998874 5
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
....++..+|.+|...|++++|..+|++++++.++
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 56788999999999999999999999999987654
No 136
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.12 E-value=4.2e-10 Score=92.54 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----------GKYREAIKYHSMVLQISE 168 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~----------~~~~~A~~~~~~al~~~~ 168 (210)
++..+|.++...|++++|+..|++++.+.+...........+..+|.++... |++++|+.+|+++++..
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 458 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD- 458 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-
Confidence 5667788888888888888888888887776554444444566777788777 88888888888887764
Q ss_pred HhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 169 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 169 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+....++..+|.+|...|++++|+.+|++++++.++
T Consensus 459 -----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 459 -----PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred -----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 556688999999999999999999999999987654
No 137
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.11 E-value=4.4e-10 Score=92.46 Aligned_cols=100 Identities=22% Similarity=0.222 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..++..+|.++...|++++|+..|++++.+.+. ...++..+|.++...|++++|+.+++++++.. +..
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------~~~ 377 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE------NVYPYIQLACLLYKQGKFTESEAFFNETKLKF------PTL 377 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Confidence 345778888888888888888888888886544 34677888888888899999999888888774 455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..++..+|.++...|++++|+.+|+++++..+
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 67888889999999999999999988887654
No 138
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.09 E-value=1.3e-09 Score=87.71 Aligned_cols=101 Identities=16% Similarity=0.218 Sum_probs=88.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028316 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 180 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 180 (210)
..+|.++...|++++|+..|++++.+.+. ++......+.++|.++...|++++|+.+++++++.. +....++
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~ 332 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME------PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------TTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHH
Confidence 44599999999999999999999986543 444456789999999999999999999999999874 6667899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 181 GAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 181 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..+|.+|...|++++|+.+|++++++.++
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999987664
No 139
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.09 E-value=2.7e-10 Score=92.45 Aligned_cols=134 Identities=10% Similarity=0.015 Sum_probs=98.1
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh--HHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEEKKAA 140 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~--~~~~~~~ 140 (210)
.+.+++.+++++...+.... .......+.++.++|.+|..+|++++|+.+|++++.+.+...+. ...+.++
T Consensus 67 ~~eAl~~~~kAl~~~~~~~~-------~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 67 NEAALECLRKAEELIQQEHA-------DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHSG-------GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCc-------cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 45666666666665432000 01112235578899999999999999999999999999986543 2346678
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhhcc
Q 028316 141 RGLGASLQRQ--GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT---ELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 141 ~~lg~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~---~~g~~~~A~~~~~~al~~~~~ 209 (210)
.++|.++... ++|++|+.+|++++++. |..+.++..+|.++. ..++.++|++.|++++++.+.
T Consensus 140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~------p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 140 CEEGWTRLKCGGNQNERAKVCFEKALEKK------PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 8888887664 57999999999999885 566677777777754 457778899999998887553
No 140
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.09 E-value=3.1e-10 Score=79.31 Aligned_cols=90 Identities=12% Similarity=0.056 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028316 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 172 (210)
.+....+++++|.+|..+|+|++|+.++++++.+.+. ...+++.+|.++..+|++++|+.+|++++++.
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~----- 127 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH----- 127 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC-----
Confidence 3445668899999999999999999999999998554 67899999999999999999999999999985
Q ss_pred CcchH-HHHHHHHHHHHHcCCHH
Q 028316 173 YSGST-EAYGAIADCYTELGDLE 194 (210)
Q Consensus 173 ~~~~~-~~~~~lg~~y~~~g~~~ 194 (210)
|... .+...++.+...+++..
T Consensus 128 -p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 128 -PAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHHHHHHHHH
Confidence 5544 66777777776655443
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.08 E-value=1.3e-09 Score=72.18 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..++..+|.++...|++++|+.++.+++.+.+. ...++..+|.++...|++++|+.+++++++.. +..
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------p~~ 113 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA------YSKAYGRMGLALSSLNKHVEAVAYYKKALELD------PDN 113 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTC
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------ccc
Confidence 446888999999999999999999999997443 46688999999999999999999999999875 556
Q ss_pred HHHHHHHHHHHHHcCCH
Q 028316 177 TEAYGAIADCYTELGDL 193 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~ 193 (210)
..++..+|.++..+|++
T Consensus 114 ~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 114 ETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 78899999999998875
No 142
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.07 E-value=2e-09 Score=81.32 Aligned_cols=93 Identities=17% Similarity=0.288 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 028316 98 LSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 98 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~ 169 (210)
.+++.+|.+|.. .+++++|+.+|+++++.. ...+++++|.+|.. .+++++|+.+|+++++.
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--- 107 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--- 107 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---
Confidence 456667777777 777777777777776631 35567777777777 77777777777777653
Q ss_pred hCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 028316 170 EGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR 206 (210)
Q Consensus 170 ~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~ 206 (210)
....+++++|.+|.. .+++++|+.+|+++++.
T Consensus 108 -----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 108 -----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp -----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred -----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence 135677777777777 77777777777777764
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.07 E-value=9.2e-10 Score=73.46 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..+++.+|.++...+++++|+.++++++.+.+. ...++.++|.++...|++++|+.+|+++++.. +..
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~~ 117 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD------SSC 117 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------GGG
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------CCc
Confidence 446889999999999999999999999997543 56789999999999999999999999999875 556
Q ss_pred HHHHHHHHHHHHHcCC
Q 028316 177 TEAYGAIADCYTELGD 192 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~ 192 (210)
..++..++.++..+|+
T Consensus 118 ~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 118 KEAADGYQRCMMAQYN 133 (133)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhcC
Confidence 6889999999988774
No 144
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.06 E-value=1.2e-09 Score=89.12 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=92.6
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 142 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 142 (210)
+..++..|.+++...+...... .+...........+++++|.+|..+++|++|+.+|++++.+.+. ...++++
T Consensus 284 ~~~A~~~y~~Al~~~p~~~~~~-~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~ 356 (457)
T 1kt0_A 284 YMQAVIQYGKIVSWLEMEYGLS-EKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA------NEKGLYR 356 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCC-hHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHH
Confidence 5556666777766554311000 00001112233668899999999999999999999999997654 5789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q 028316 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF 199 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 199 (210)
+|.+|..+|++++|+.+|++++++. +....++.+++.++..++++++|...
T Consensus 357 ~g~a~~~~g~~~~A~~~~~~al~l~------P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 357 RGEAQLLMNEFESAKGDFEKVLEVN------PQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998875 56668899999999999999888753
No 145
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.05 E-value=1e-09 Score=70.55 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
...+++.+|.++...|++++|+.+|++++++ .+....+++++|.+|...|++++|+..|++++++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3555666666666666666666666666662 3445556666666666666666666666666666543
No 146
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.05 E-value=1.1e-09 Score=86.99 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=83.9
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 028316 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 171 (210)
.......+++++|.+|+.+++|++|+.++++++++.+. ...+++++|.+|..+|++++|+.+|++++++.
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---- 337 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS------NTKALYRRAQGWQGLKEYDQALADLKKAQEIA---- 337 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----
Confidence 34456778999999999999999999999999996443 57889999999999999999999999999885
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHH
Q 028316 172 EYSGSTEAYGAIADCYTELGDLERAARF 199 (210)
Q Consensus 172 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 199 (210)
+....++..++.++..+++++++...
T Consensus 338 --P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 338 --PEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999999998887653
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.05 E-value=3.1e-10 Score=78.44 Aligned_cols=80 Identities=11% Similarity=0.124 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHH
Q 028316 118 TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 197 (210)
Q Consensus 118 ~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 197 (210)
..|++++.+ .+....+++++|.++...|++++|+..|++++... +....+++++|.+|..+|++++|+
T Consensus 8 ~~~~~al~~------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~ 75 (148)
T 2vgx_A 8 GTIAMLNEI------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD------HYDSRFFLGLGACRQAMGQYDLAI 75 (148)
T ss_dssp CSHHHHTTC------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHcC------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC------cccHHHHHHHHHHHHHHhhHHHHH
Confidence 345666654 34478899999999999999999999999999875 667889999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 028316 198 RFYDKYISRLES 209 (210)
Q Consensus 198 ~~~~~al~~~~~ 209 (210)
.+|++++.+.++
T Consensus 76 ~~~~~al~l~p~ 87 (148)
T 2vgx_A 76 HSYSYGAVMDIX 87 (148)
T ss_dssp HHHHHHHHHSTT
T ss_pred HHHHHHHhcCCC
Confidence 999999988764
No 148
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.05 E-value=6e-11 Score=97.43 Aligned_cols=93 Identities=20% Similarity=0.210 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..++.++|.+|..+|++++|+.+|++++++.+. ...+++++|.+|..+|++++|+.+|++++++. +..
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------p~~ 107 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYYRRAASNMALGKFRAALRDYETVVKVK------PHD 107 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------TTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Confidence 557899999999999999999999999996443 57789999999999999999999999999885 444
Q ss_pred HHHHHHHHHH--HHHcCCHHHHHHHHH
Q 028316 177 TEAYGAIADC--YTELGDLERAARFYD 201 (210)
Q Consensus 177 ~~~~~~lg~~--y~~~g~~~~A~~~~~ 201 (210)
..++.+++.+ +...|++++|+..++
T Consensus 108 ~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 108 KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5677788888 888999999999998
No 149
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.05 E-value=6.4e-09 Score=84.19 Aligned_cols=98 Identities=14% Similarity=0.037 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE- 170 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~- 170 (210)
...+.++.++|.+|..+|+|++|+.++++++.+.++. .+++..+..++++|.+|..+|++++|+.++++|+++....
T Consensus 326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~l 405 (429)
T 3qwp_A 326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH 405 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence 4567788999999999999999999999999999875 4668889999999999999999999999999999999874
Q ss_pred -CCCcchHHHHHHHHHHHHHcC
Q 028316 171 -GEYSGSTEAYGAIADCYTELG 191 (210)
Q Consensus 171 -~~~~~~~~~~~~lg~~y~~~g 191 (210)
.+++....++.+++.+..+++
T Consensus 406 G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 406 GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHh
Confidence 466778888999999887653
No 150
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.04 E-value=2.5e-09 Score=75.79 Aligned_cols=102 Identities=13% Similarity=0.094 Sum_probs=54.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------
Q 028316 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS------------ 167 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------ 167 (210)
.+..|..+...|++++|+..|++++++.+. ...++.++|.++...|++++|+..++++++..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS------RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKL 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHH
Confidence 344455555555555555555555554443 34455555555555555555555554432110
Q ss_pred ---HHhC-------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 168 ---EREG-------------EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 168 ---~~~~-------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.... ..|....+++++|.++...|++++|+.+|+++++..
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 138 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN 138 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 0000 023445666677777777777777777777766654
No 151
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.01 E-value=1.9e-09 Score=69.24 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
...+++++|.++...|++++|+.+|++++++. +....+++++|.+|..+|++++|+.+|++++++.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 46689999999999999999999999999886 66678999999999999999999999999998764
No 152
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.00 E-value=3.9e-09 Score=65.84 Aligned_cols=71 Identities=28% Similarity=0.493 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 133 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 133 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+.....+++.+|.++...|++++|+.+|+++++.. +....++.++|.+|...|++++|+.+|+++++..++
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 33467789999999999999999999999999875 556789999999999999999999999999987654
No 153
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.99 E-value=2.3e-09 Score=82.11 Aligned_cols=105 Identities=10% Similarity=0.043 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI----------- 166 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------- 166 (210)
...+.+|..+...|++++|+..|++++...+. ...++.++|.++...|++++|+..+++++..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 35688999999999999999999999997665 5778999999999999999999888886431
Q ss_pred ----HH-------------HhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 167 ----SE-------------REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 167 ----~~-------------~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.. .....|....+++++|.+|...|++++|+..|++++...+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 00 0112466778999999999999999999999999998754
No 154
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.99 E-value=8.1e-09 Score=77.93 Aligned_cols=95 Identities=19% Similarity=0.295 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 028316 96 ELLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 96 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~ 167 (210)
...+++.+|.+|.. .+++++|+.+|+++++. + ...+++++|.+|.. .+++++|+.+|+++++..
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 34567889999999 99999999999999884 1 46789999999999 999999999999998642
Q ss_pred HHhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 028316 168 EREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR 206 (210)
Q Consensus 168 ~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~ 206 (210)
...++.++|.+|.. .+++++|+.+|+++++.
T Consensus 145 --------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 145 --------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp --------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred --------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 46789999999999 99999999999999875
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.98 E-value=4.3e-09 Score=73.52 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
..+++++|.+|..+|++++|+.+|++++.+.+. ...+++++|.++..+|++++|+.+|++++++.
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 457899999999999999999999999998654 57789999999999999999999999999987
No 156
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.98 E-value=3.5e-09 Score=68.58 Aligned_cols=68 Identities=21% Similarity=0.324 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.+.++.++|.++...|++++|+.+|++++++. +....+++++|.+|..+|++++|+.+|++++++.++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45678999999999999999999999999885 566789999999999999999999999999987654
No 157
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.98 E-value=1.2e-08 Score=82.67 Aligned_cols=90 Identities=14% Similarity=-0.054 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE- 170 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~- 170 (210)
...+.++.++|.+|..+|+|++|+.++++++.+.++. .+++..+..++++|.+|..+|+|++|..++++|+++....
T Consensus 337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~l 416 (433)
T 3qww_A 337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH 416 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Confidence 4567788999999999999999999999999999875 3678889999999999999999999999999999999764
Q ss_pred -CCCcchHHHHHHH
Q 028316 171 -GEYSGSTEAYGAI 183 (210)
Q Consensus 171 -~~~~~~~~~~~~l 183 (210)
.+++....+..+|
T Consensus 417 G~~Hp~~~~l~~~l 430 (433)
T 3qww_A 417 GKDHPYISEIKQEI 430 (433)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHH
Confidence 3445555555554
No 158
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=2.2e-09 Score=76.08 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH---------------HhcCC-------------hHHHHHHHHHHHHHHH
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELA---------------QNVKD-------------PIEEKKAARGLGASLQ 148 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~---------------~~~~~-------------~~~~~~~~~~lg~~~~ 148 (210)
..+++.+|.++...|++++|+..+++++... ...+. .+....+++++|.++.
T Consensus 40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~ 119 (176)
T 2r5s_A 40 GDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYN 119 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3456667777777777777776665543221 11011 1123568899999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 149 RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 149 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
..|++++|+..|+++++... .+....++.++|.++..+|+.++|..+|++++..
T Consensus 120 ~~g~~~~A~~~~~~~l~~~p----~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 120 QVGRDEEALELLWNILKVNL----GAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HTTCHHHHHHHHHHHHTTCT----TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCc----ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 99999999999999987641 1123568999999999999999999999999864
No 159
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.97 E-value=5.2e-09 Score=69.00 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
+....+++.+|.++..+|++++|+.+|++++++.+. ...+++++|.++...|++++|+.+++++++..
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN------HQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 446678999999999999999999999999997655 47789999999999999999999999998875
No 160
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.97 E-value=5.6e-09 Score=80.19 Aligned_cols=104 Identities=17% Similarity=0.150 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC---------------C---------------hHHHHHHHHHHHHHHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK---------------D---------------PIEEKKAARGLGASLQ 148 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~---------------~---------------~~~~~~~~~~lg~~~~ 148 (210)
++..+|.++..+|++++|+..+++++...+... + .+..+.+++++|.++.
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~ 211 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM 211 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 456667777777777777777766665432100 0 0002234455555666
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhhc
Q 028316 149 RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER-AARFYDKYISRLE 208 (210)
Q Consensus 149 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~-A~~~~~~al~~~~ 208 (210)
..|++++|...|+++++.. |..+.++.++|.++...|+.++ +..++++++++.+
T Consensus 212 ~~g~~~eA~~~l~~al~~~------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 212 AQGRWEAAEGVLQEALDKD------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 6666666666666665543 4445555666666666665544 3455555555444
No 161
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.96 E-value=6.9e-09 Score=79.68 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE------ 170 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------ 170 (210)
...++.+|.++...|++++|+..+++ + ....++..+|.++..+|++++|+..++++++.....
T Consensus 101 ~~~~~~la~~~~~~g~~~~Al~~l~~-----~------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~ 169 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDAALRTLHQ-----G------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLA 169 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTT-----C------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhC-----C------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHH
Confidence 34588899999999999999998876 1 134466677777777777777777777766443100
Q ss_pred ------------------------CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028316 171 ------------------------GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210 (210)
Q Consensus 171 ------------------------~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 210 (210)
...|..+.+++++|.++..+|++++|...|+++++..+++
T Consensus 170 ~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 170 TAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 0024456678899999999999999999999999876643
No 162
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.96 E-value=1e-09 Score=69.97 Aligned_cols=88 Identities=19% Similarity=0.281 Sum_probs=69.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028316 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK-AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 179 (210)
+..|..+...|++++|+..|++++++.+. ... +++++|.++...|++++|+.+|++++++. +....+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~ 71 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN------PDSPAL 71 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTSTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCcHHH
Confidence 56799999999999999999999996543 456 89999999999999999999999999885 333344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 180 YGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+.+ +.+.+++.+|+++....+
T Consensus 72 ~~~--------~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 72 QAR--------KMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp HHH--------HHHHHHHHHHCCTTHHHH
T ss_pred HHH--------HHHHHHHHHHHHHhccCc
Confidence 422 566677777776665544
No 163
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.96 E-value=7.3e-10 Score=78.35 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=76.1
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 028316 107 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 186 (210)
Q Consensus 107 ~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 186 (210)
+...|++++|+..+++++...+. ...++..+|.++...|++++|+.+|++++++. +....++..+|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~ 87 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR------GENAELYAALATV 87 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------CSCHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHH
Confidence 45678999999999999986543 46789999999999999999999999999886 5667899999999
Q ss_pred -HHHcCCH--HHHHHHHHHHHHhhcc
Q 028316 187 -YTELGDL--ERAARFYDKYISRLES 209 (210)
Q Consensus 187 -y~~~g~~--~~A~~~~~~al~~~~~ 209 (210)
|...|++ ++|+.+++++++..++
T Consensus 88 l~~~~~~~~~~~A~~~~~~al~~~p~ 113 (177)
T 2e2e_A 88 LYYQASQHMTAQTRAMIDKALALDSN 113 (177)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred HHHhcCCcchHHHHHHHHHHHHhCCC
Confidence 8899999 9999999999987654
No 164
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.96 E-value=4.6e-10 Score=88.14 Aligned_cols=99 Identities=10% Similarity=0.109 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
+++++|.++..+++|++|+.+|++++.+.+. ...+++++|.+|..+|++++|+.+|++++++. +....
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~------p~~~~ 299 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK------NPKALFRRGKAKAELGQMDSARDDFRKAQKYA------PDDKA 299 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHH
Confidence 6899999999999999999999999997554 57789999999999999999999999998876 55667
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHhhcc
Q 028316 179 AYGAIADCY-TELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 179 ~~~~lg~~y-~~~g~~~~A~~~~~~al~~~~~ 209 (210)
++..++.+. ...+..+++...|.+++...++
T Consensus 300 a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 300 IRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 888899884 4567788899999998877653
No 165
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=1.6e-08 Score=73.91 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Q 028316 97 LLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISE 168 (210)
Q Consensus 97 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~ 168 (210)
..+++++|.+|.. .+++++|+.+|+++.+. ++....+.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-- 158 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-- 158 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--
Confidence 4468899999988 89999999999999873 2222457899999999999 88999999999999765
Q ss_pred HhCCCcchHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHh
Q 028316 169 REGEYSGSTEAYGAIADCYTEL-G-----DLERAARFYDKYISR 206 (210)
Q Consensus 169 ~~~~~~~~~~~~~~lg~~y~~~-g-----~~~~A~~~~~~al~~ 206 (210)
+....+++++|.+|... | ++++|+.+|+++.+.
T Consensus 159 -----~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 159 -----SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp -----SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 23346899999999864 3 899999999999875
No 166
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=4.2e-09 Score=77.02 Aligned_cols=91 Identities=15% Similarity=0.121 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhCCC
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG----KYREAIKYHSMVLQISEREGEY 173 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~----~~~~A~~~~~~al~~~~~~~~~ 173 (210)
.+++.+|.+|...+++++|+.+|+++.+. + .+.+++++|.+|.. + ++++|+.+|+++.+
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-------- 81 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ----G----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-------- 81 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT----T----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--------
Confidence 35666666666666666666666666542 1 23455566666555 4 56666666666532
Q ss_pred cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 028316 174 SGSTEAYGAIADCYTE----LGDLERAARFYDKYIS 205 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~ 205 (210)
.+.+.+++++|.+|.. .+++++|+.+|+++.+
T Consensus 82 ~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 82 AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 2233444444544444 4444555554444443
No 167
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.91 E-value=1.2e-08 Score=66.89 Aligned_cols=85 Identities=22% Similarity=0.337 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..+++.+|.++...|++++|+.+|++++.+.+. ...+++++|.++...|++++|+.+|++++++....++
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 88 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD---- 88 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc----
Confidence 447889999999999999999999999997554 4668899999999999999999999999998765433
Q ss_pred HHHHHHHHHHHHHcC
Q 028316 177 TEAYGAIADCYTELG 191 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g 191 (210)
......+...+..++
T Consensus 89 ~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 89 QQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 233444444444433
No 168
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.90 E-value=1.3e-08 Score=66.68 Aligned_cols=82 Identities=27% Similarity=0.456 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
.+++.+|.++...|++++|+..+++++...+. ...++..+|.++...|++++|+.+++++++.. +...
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~ 111 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PNNA 111 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCcH
Confidence 36788999999999999999999999986443 35678899999999999999999999998875 5567
Q ss_pred HHHHHHHHHHHHcC
Q 028316 178 EAYGAIADCYTELG 191 (210)
Q Consensus 178 ~~~~~lg~~y~~~g 191 (210)
.++..+|.++...|
T Consensus 112 ~~~~~l~~~~~~~g 125 (125)
T 1na0_A 112 EAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcc
Confidence 88999999987654
No 169
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.89 E-value=3.4e-08 Score=63.93 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
+..++.+|..++..++|..|+.+|++|++..+.-. .......++.++|.++..+|++++|+.++++++++. |.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~------P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD------PE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------CC
Confidence 34689999999999999999999999999876432 123467889999999999999999999999999885 55
Q ss_pred hHHHHHHHHH
Q 028316 176 STEAYGAIAD 185 (210)
Q Consensus 176 ~~~~~~~lg~ 185 (210)
...+..+++.
T Consensus 79 ~~~~~~n~~~ 88 (104)
T 2v5f_A 79 HQRANGNLKY 88 (104)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHhhHHH
Confidence 5666777763
No 170
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.89 E-value=2.8e-08 Score=67.73 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=78.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028316 103 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 103 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
+|.+|...+.+++|+.+|+++.+. ..+.+.+++|.+|.. .+++++|+.+|+++.+. +.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--------g~~~ 94 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--------NDQD 94 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--------TCHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--------CCHH
Confidence 899999999999999999999884 246789999999999 89999999999999643 4578
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 028316 179 AYGAIADCYTE----LGDLERAARFYDKYISR 206 (210)
Q Consensus 179 ~~~~lg~~y~~----~g~~~~A~~~~~~al~~ 206 (210)
+++++|.+|.. .+++++|+.+|++|.+.
T Consensus 95 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 95 GCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 89999999999 99999999999999875
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.89 E-value=4.3e-08 Score=64.77 Aligned_cols=88 Identities=17% Similarity=0.212 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
..++..+|.++...|++++|+.++++++.+.+.. .+......++.++|.++...|++++|+.+|+++++.. +
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~- 110 (131)
T 1elr_A 38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH------R- 110 (131)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------C-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------C-
Confidence 3467889999999999999999999999998874 3444448899999999999999999999999998864 3
Q ss_pred hHHHHHHHHHHHHHcC
Q 028316 176 STEAYGAIADCYTELG 191 (210)
Q Consensus 176 ~~~~~~~lg~~y~~~g 191 (210)
.......++.+...++
T Consensus 111 ~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 111 TPDVLKKCQQAEKILK 126 (131)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3567777777776554
No 172
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.88 E-value=2.1e-08 Score=68.44 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 132 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 132 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..+.....++.+|.++...|++++|+.+|++++... |....+++.+|.+|...|++++|+.+|++++.+.++
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 344578889999999999999999999999999875 667889999999999999999999999999988664
No 173
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.86 E-value=2.1e-07 Score=70.76 Aligned_cols=102 Identities=10% Similarity=-0.006 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc-hH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-ST 177 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~ 177 (210)
..+.+|.+++..++|+.|+.+|+++... .++.....+++++|.++..+|++++|+.+|++++.- ...+. ..
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g----~~~P~~~~ 208 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKW----PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS----PAGEACAR 208 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGC----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----TTTTTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcc----CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC----CCCccccH
Confidence 7899999999999999999999866442 233334668999999999999999999999999621 11133 67
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 178 EAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.+.+++|.++..+|+.++|...|++++...+
T Consensus 209 da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 209 AIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999988654
No 174
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.86 E-value=5e-09 Score=72.75 Aligned_cols=83 Identities=13% Similarity=0.206 Sum_probs=67.2
Q ss_pred HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHHHhcCC
Q 028316 63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDL----------EKAFTEFKAALELAQNVKD 132 (210)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~A~~~~~~al~l~~~~~~ 132 (210)
++.++..+.+++...+. .+.+++++|.++...+++ ++|+..|++++++.+.
T Consensus 18 feeA~~~~~~Ai~l~P~----------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~--- 78 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPL----------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK--- 78 (158)
T ss_dssp HHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---
Confidence 45555666666665443 345688889999988775 5999999999998766
Q ss_pred hHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHH
Q 028316 133 PIEEKKAARGLGASLQRQG-----------KYREAIKYHSMVLQIS 167 (210)
Q Consensus 133 ~~~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~~~ 167 (210)
...+++++|.+|..+| ++++|+.+|++|+++.
T Consensus 79 ---~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 79 ---KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 7889999999999875 8999999999999986
No 175
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.85 E-value=1.7e-08 Score=77.30 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------HHhcC-------------ChHHHHHHHHHHHHHHHH
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALEL---------------AQNVK-------------DPIEEKKAARGLGASLQR 149 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l---------------~~~~~-------------~~~~~~~~~~~lg~~~~~ 149 (210)
.+++.+|.++..+|++++|+..+++++.. ..... ..+....+++++|.++..
T Consensus 152 ~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 152 EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ 231 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 35677777777777777777666654321 11000 112246689999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 150 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 150 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.|++++|+..|+++++... ......++.++|.++..+|+.++|...|++++..
T Consensus 232 ~g~~~~A~~~l~~~l~~~p----~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 232 VGRNEEALELLFGHLRXDL----TAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp TTCHHHHHHHHHHHHHHCT----TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhccc----ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 9999999999999998751 1223788999999999999999999999999864
No 176
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.85 E-value=5.1e-08 Score=63.10 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE-YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+.-++.+|..++..++|.+|+.+|++|++....... ......++..+|.+|..+|++++|+.++++++++.++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 446789999999999999999999999988754332 2457889999999999999999999999999987664
No 177
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.85 E-value=1.2e-08 Score=68.57 Aligned_cols=87 Identities=20% Similarity=0.162 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..+++.+|.++..+|++++|+..+++++.+.+. ...+++++|.++...|++++|+.+|++++++...... ...
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~ 115 (137)
T 3q49_B 43 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-NFG 115 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CCT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHH-HHH
Confidence 447899999999999999999999999997654 5678999999999999999999999999998865221 123
Q ss_pred HHHHHHHHHHHHHc
Q 028316 177 TEAYGAIADCYTEL 190 (210)
Q Consensus 177 ~~~~~~lg~~y~~~ 190 (210)
..+...+..+....
T Consensus 116 ~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 116 DDIPSALRIAKKKR 129 (137)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555443
No 178
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.80 E-value=5.9e-09 Score=79.62 Aligned_cols=68 Identities=24% Similarity=0.256 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
...+.++|.+|..+|++++|+..+++++++.+. ...+++++|.++..+|++++|+.+|++++++....
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 446889999999999999999999999986443 56789999999999999999999999999987643
No 179
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=5.1e-08 Score=66.08 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
...++..+|.++...+++++|+.++++++.+.+. ...+++++|.++...|++++|+.+|++++++. +.
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~ 131 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLE------PK 131 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------SS
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CC
Confidence 3567899999999999999999999999997543 46788999999999999999999999999875 55
Q ss_pred hHHHHHHHHHHHH
Q 028316 176 STEAYGAIADCYT 188 (210)
Q Consensus 176 ~~~~~~~lg~~y~ 188 (210)
...++..++.+..
T Consensus 132 ~~~~~~~l~~~~~ 144 (148)
T 2dba_A 132 NKVFQEALRNISG 144 (148)
T ss_dssp CHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHh
Confidence 5666777776654
No 180
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.78 E-value=4.6e-08 Score=63.39 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 176 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 176 (210)
..++..+|.++...|++++|+..+++++.+.+. ...++.++|.++...|++++|..+++++++.. +..
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~ 105 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE------ANN 105 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------TTC
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC------CCC
Confidence 346888999999999999999999999997543 46788999999999999999999999998764 555
Q ss_pred HHHHHHHHHHH
Q 028316 177 TEAYGAIADCY 187 (210)
Q Consensus 177 ~~~~~~lg~~y 187 (210)
..++..++.+.
T Consensus 106 ~~~~~~l~~~~ 116 (118)
T 1elw_A 106 PQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 67777777764
No 181
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.78 E-value=2.6e-08 Score=76.85 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
++...|..+...|++++|...|+++++..+. ....+...+..... .|++++|...|+++++.. +...
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~------p~~~ 203 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY------GDIP 203 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH------TTCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcH
Confidence 3444455555555555555555555543221 12222233333222 466666666666666654 4456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 178 EAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.++.++|..+...|++++|+..|++++..
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77788888888888888888888888774
No 182
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.77 E-value=4.7e-08 Score=62.08 Aligned_cols=63 Identities=24% Similarity=0.285 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 141 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE-AYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
+..|.++...|++++|+..|+++++.. +.... +++++|.+|..+|++++|+.+|++++++.++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 568999999999999999999999875 56677 9999999999999999999999999988664
No 183
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.75 E-value=2.3e-08 Score=77.09 Aligned_cols=102 Identities=9% Similarity=-0.002 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK-AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 174 (210)
...++...|..+...|++++|...|++++++.+. ... ++.++|.++...|++++|...|+++++.. +
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------p 165 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA------R 165 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST------T
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------C
Confidence 4445566666666666666666666666663221 112 56666666666666666666666665543 2
Q ss_pred chHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhcc
Q 028316 175 GSTEAYGAIADCYT-ELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 175 ~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~ 209 (210)
....++...+.+.. ..|++++|...|+++++..++
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~ 201 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD 201 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 22344444444432 256777777777777665543
No 184
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.74 E-value=7.6e-08 Score=63.95 Aligned_cols=65 Identities=15% Similarity=-0.018 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.++.+|..+...|++++|+..|+++++.. |....+++.+|.++...|++++|+.+|++++++.++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 46789999999999999999999999886 777899999999999999999999999999998664
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.68 E-value=2.5e-07 Score=61.30 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.+++.+|.++...|++++|+.+|++++...+. ......+++.+|.++...|++++|+.+|+++++..
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPT---HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 46888999999999999999999999997554 22247789999999999999999999999998875
No 186
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.65 E-value=4.2e-07 Score=74.47 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhC
Q 028316 99 SRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISEREG 171 (210)
Q Consensus 99 ~~~~~g~~~~~~~---~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~ 171 (210)
+++++|.+|...| ++++|+.+|+++.+. + .+.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----- 396 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----G----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----- 396 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-----
Confidence 4566677776655 677777777777663 1 35678888888888 78888999998888652
Q ss_pred CCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 028316 172 EYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISRL 207 (210)
Q Consensus 172 ~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~ 207 (210)
+.+.+++++|.+|.. .+++++|..+|+++++..
T Consensus 397 ---~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 397 ---GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 236788899999988 889999999999988765
No 187
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.64 E-value=1.6e-06 Score=60.06 Aligned_cols=107 Identities=19% Similarity=0.184 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 172 (210)
..++++.-....+..+.|+.|+.....++.+.+...+ +.....++..+|.+++..++|.+|..+|+++++..+....
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3455677777888999999999999999998876444 5667889999999999999999999999999988864221
Q ss_pred -------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028316 173 -------------------YSGSTEAYGAIADCYTELGDLERAARFYDK 202 (210)
Q Consensus 173 -------------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 202 (210)
.....++.+.++.||.+++++++|+..++.
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 122347889999999999999999998764
No 188
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.62 E-value=1e-07 Score=61.23 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
..++..+|.++...|++++|+.+|+++++.. +....++.++|.++...|++++|+.+|+++++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3467889999999999999999999999875 556788999999999999999999999999987654
No 189
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.59 E-value=8.9e-07 Score=72.52 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 028316 96 ELLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 96 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~ 167 (210)
...+++.+|.+|.. .+++++|+.+|+++.+. + .+.+.+++|.+|.. .+++++|+.+|+++.+.
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 144 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----G----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ- 144 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence 45677888999988 89999999999998762 1 35678889999988 88999999999988542
Q ss_pred HHhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 028316 168 EREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR 206 (210)
Q Consensus 168 ~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~ 206 (210)
+...+++++|.+|.. .+++++|+++|+++.+.
T Consensus 145 -------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 145 -------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp -------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred -------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 346889999999988 88999999999998764
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.47 E-value=1e-06 Score=73.78 Aligned_cols=101 Identities=9% Similarity=0.008 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Q 028316 97 LLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVL 164 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al 164 (210)
..+++..+.+....++ +++++..+++++...++ ...++++.+++....+ +++++++++++++
T Consensus 63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK------~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l 136 (567)
T 1dce_A 63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------SYGTWHHRCWLLSRLPEPNWARELELCARFL 136 (567)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence 4468888888888887 99999999999997655 6778999999999999 7799999999999
Q ss_pred HHHHHhCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Q 028316 165 QISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLES 209 (210)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~ 209 (210)
+.. +....+|...+.+....| .+++++++++++++..+.
T Consensus 137 ~~d------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~ 176 (567)
T 1dce_A 137 EAD------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176 (567)
T ss_dssp HHC------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred hhc------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence 985 667899999999999999 999999999999887654
No 191
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.38 E-value=1.2e-06 Score=71.35 Aligned_cols=92 Identities=14% Similarity=0.254 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhC
Q 028316 99 SRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----GKYREAIKYHSMVLQISEREG 171 (210)
Q Consensus 99 ~~~~~g~~~~~~~---~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~~~~~ 171 (210)
+.+.+|.+|...| ++++|+.+|+++.+.... .+..++++|.+|... +++++|+.+|+++.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa------- 244 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA------- 244 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-------
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-------
Confidence 5677888888888 888888888877663221 333445566665443 45666666666553
Q ss_pred CCcchHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHH
Q 028316 172 EYSGSTEAYGAIADC-Y--TELGDLERAARFYDKYIS 205 (210)
Q Consensus 172 ~~~~~~~~~~~lg~~-y--~~~g~~~~A~~~~~~al~ 205 (210)
++.+.+++++|.+ | ...+++++|+.+|+++.+
T Consensus 245 --~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 245 --PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp --GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 2223455555555 2 345555555555555543
No 192
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.36 E-value=1.5e-06 Score=70.67 Aligned_cols=91 Identities=12% Similarity=0.050 Sum_probs=66.1
Q ss_pred HHHHHHHHH-H--HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHH
Q 028316 98 LSRLKTGKN-F--LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-----KYREAIKYHSMVLQISER 169 (210)
Q Consensus 98 ~~~~~~g~~-~--~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~~~~~ 169 (210)
.+++++|.+ + ...+++++|+.+|+++.+. + .+.+.+++|.+|. .| ++++|+.+|+++.
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----- 314 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----- 314 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----
Confidence 456777777 4 4677888888888887752 1 4567788888887 44 8888888888874
Q ss_pred hCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 028316 170 EGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR 206 (210)
Q Consensus 170 ~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~ 206 (210)
++.+.+++++|.+|.. ..++++|..+|+++.+.
T Consensus 315 ----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 315 ----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp ----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred ----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 3345788888888876 34888888888888763
No 193
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.36 E-value=1.5e-06 Score=71.78 Aligned_cols=98 Identities=13% Similarity=0.082 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---------------------------
Q 028316 98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ--------------------------- 150 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~--------------------------- 150 (210)
..+...|..+...|++++|...|++++++.+. + ...++.++|.++...
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~---~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~ 396 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--D---PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 396 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS--C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc--C---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence 35666777777777777777777777764221 1 112444444444444
Q ss_pred --------CCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 151 --------GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 151 --------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
|++++|...|+++++.. |....++..++..+...|+.++|...|++++..
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKY------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHC------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 44555555555554443 334455666666666666666666666666654
No 194
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.36 E-value=3.7e-07 Score=69.45 Aligned_cols=96 Identities=11% Similarity=-0.047 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
..+..+..+...|+|++|.+.|...+.. . +... ..+.+|.++...+++++|+.+|+++.... +......
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~-----~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~----d~~~~~~ 172 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA-----G-SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP----DKFLAGA 172 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT-----T-CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS----CHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C-CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC----CcccHHH
Confidence 3566689999999999999999887652 2 2344 88999999999999999999998664331 1111346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 179 AYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
+++++|.++..+|++++|+.+|++++.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 899999999999999999999999974
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.35 E-value=1.3e-06 Score=73.21 Aligned_cols=103 Identities=7% Similarity=-0.042 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCC
Q 028316 96 ELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISEREGE 172 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~ 172 (210)
...++.+.+.+....+ ++++++..+.+++++.++ ...++++.|.+....| .+++++++++++++..
T Consensus 106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~----- 174 (567)
T 1dce_A 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN----- 174 (567)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-----
T ss_pred CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc------cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-----
Confidence 3457888999999999 779999999999997555 6778999999999999 8999999999998764
Q ss_pred CcchHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhhccC
Q 028316 173 YSGSTEAYGAIADCYTEL--------------GDLERAARFYDKYISRLESD 210 (210)
Q Consensus 173 ~~~~~~~~~~lg~~y~~~--------------g~~~~A~~~~~~al~~~~~~ 210 (210)
+....+|++.|.++..+ +.+++|++++++|+.+.++|
T Consensus 175 -p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 175 -FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp -CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred -CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC
Confidence 77789999999999885 56899999999999887654
No 196
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=3.5e-06 Score=57.85 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 136 EKKAARGLGASLQRQG---KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
...+.+++|+++.+.+ +.++|+..++..++.. .+....++++++|..|..+|+|++|+.++++++++-|.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 4567777888887766 5567888888876642 11245678888888888888888888888888876553
No 197
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.28 E-value=4.7e-06 Score=68.85 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=77.1
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 028316 107 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 186 (210)
Q Consensus 107 ~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 186 (210)
+...|++++|...|+++++..+. ...++..++..+...|++++|...|++++.... .+.......+......
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~------~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~--~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGD------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS--LPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC--SCGGGCHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHCCC------CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC--CCHHHHHHHHHHHHHH
Confidence 34588999999999999987654 466788999999999999999999999976531 1112345678888998
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcc
Q 028316 187 YTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 187 y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
....|+.+.+...+.++++.+++
T Consensus 473 e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCch
Confidence 99999999999999999988764
No 198
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.28 E-value=8.1e-06 Score=63.03 Aligned_cols=101 Identities=6% Similarity=-0.114 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHH
Q 028316 97 LLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL----QRQ---GKYREAIKYHSMVLQIS 167 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~----~~~---~~~~~A~~~~~~al~~~ 167 (210)
..+++..|.+....+ ++++++..+.+++.+.++ ...++++.+.+. ... +++++++.+++++++..
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk------~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~ 140 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK------NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD 140 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT------CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc------cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC
Confidence 446888899999998 999999999999997665 566788888888 666 78999999999998875
Q ss_pred HHhCCCcchHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhcc
Q 028316 168 EREGEYSGSTEAYGAIADCYTELGDLE--RAARFYDKYISRLES 209 (210)
Q Consensus 168 ~~~~~~~~~~~~~~~lg~~y~~~g~~~--~A~~~~~~al~~~~~ 209 (210)
+....+++..+.+...+|+++ +++++++++++..+.
T Consensus 141 ------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~ 178 (306)
T 3dra_A 141 ------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK 178 (306)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT
T ss_pred ------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC
Confidence 777899999999999999998 999999999987553
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.27 E-value=5.5e-06 Score=56.16 Aligned_cols=78 Identities=26% Similarity=0.354 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH-
Q 028316 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE- 189 (210)
Q Consensus 111 ~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~- 189 (210)
+++++|+.+|+++.+. ++.. +. +|.+|...+..++|+.+|+++.+. +.+.+++++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~----g~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL----NEMF----GC--LSLVSNSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHT----TCTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcC----CCHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHcC
Confidence 4789999999999873 2222 22 999999999999999999999653 456899999999999
Q ss_pred ---cCCHHHHHHHHHHHHHh
Q 028316 190 ---LGDLERAARFYDKYISR 206 (210)
Q Consensus 190 ---~g~~~~A~~~~~~al~~ 206 (210)
.+++++|+.+|+++.+.
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHcC
Confidence 89999999999999864
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.26 E-value=7.4e-06 Score=51.68 Aligned_cols=65 Identities=14% Similarity=-0.018 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 137 KKAARGLGASLQRQGK---YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+..+..+|.+++..++ .++|...++++++.. +....++..+|..++..|+|++|+.+|+++++..
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4456666666655444 577777777777764 5666777777777777777777777777776544
No 201
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.23 E-value=6.3e-06 Score=74.52 Aligned_cols=97 Identities=12% Similarity=0.163 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE------ 170 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------ 170 (210)
..+++.+|..+...|++++|+..|.++ .....+..+|.++.+.|+|++|++++.++.+..+..
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-----------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~L 1173 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETEL 1173 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHH
Confidence 346889999999999999999999886 146678889999999999999999998877544110
Q ss_pred -------CC--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028316 171 -------GE--------YSGSTEAYGAIADCYTELGDLERAARFYDKYI 204 (210)
Q Consensus 171 -------~~--------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 204 (210)
+. .......+.++|..+...|+|++|..+|.++-
T Consensus 1174 afaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ 1222 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS 1222 (1630)
T ss_pred HHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Confidence 00 01122346679999999999999998888763
No 202
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.13 E-value=0.00011 Score=57.20 Aligned_cols=100 Identities=9% Similarity=0.004 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Q 028316 98 LSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVLQ 165 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~----------~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~ 165 (210)
.+++..+.+....+. +++++.++.+++...++ ...++++.+.+....+ ++++++.++.++++
T Consensus 65 taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~ 138 (331)
T 3dss_A 65 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------SYGTWHHRCWLLSRLPEPNWARELELCARFLE 138 (331)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence 356666666665554 68889999999886555 6778999999999998 48999999999998
Q ss_pred HHHHhCCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhcc
Q 028316 166 ISEREGEYSGSTEAYGAIADCYTELGD-LERAARFYDKYISRLES 209 (210)
Q Consensus 166 ~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~ 209 (210)
.. +.+..++...+.+....|. +++++++++++++..+.
T Consensus 139 ~d------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 139 AD------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 177 (331)
T ss_dssp HC------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred hC------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence 75 7778999999999999999 69999999999987654
No 203
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.10 E-value=0.00014 Score=57.90 Aligned_cols=108 Identities=6% Similarity=-0.105 Sum_probs=94.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCCcchHH
Q 028316 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYSGSTE 178 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~ 178 (210)
-..+|..|+..|+|.+|...+.+..+-+.+.++.....+.+..-..+|...+++.++...+.++....... .++...+.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 34789999999999999999999999999988888899999999999999999999999999999888765 33334677
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Q 028316 179 AYGAIADCYT-ELGDLERAARFYDKYISRL 207 (210)
Q Consensus 179 ~~~~lg~~y~-~~g~~~~A~~~~~~al~~~ 207 (210)
....-|..+. ..++|+.|..+|-++.+-+
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 7888889999 8999999999998887544
No 204
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.07 E-value=4e-05 Score=59.69 Aligned_cols=102 Identities=7% Similarity=-0.047 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCC
Q 028316 97 LLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQISEREGEY 173 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~ 173 (210)
..++...+.+....+ .+++++.++.+++++.++ ...++++.+.+....|. ++++++++.++++..
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr------Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~------ 175 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN------ 175 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC------
Confidence 446888899988888 499999999999997555 67789999999999998 699999999999875
Q ss_pred cchHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhhccC
Q 028316 174 SGSTEAYGAIADCYTEL--------------GDLERAARFYDKYISRLESD 210 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~--------------g~~~~A~~~~~~al~~~~~~ 210 (210)
+.+..++++.+.+...+ +.++++++++.+++...++|
T Consensus 176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d 226 (331)
T 3dss_A 176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 226 (331)
T ss_dssp SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC
Confidence 77788999999998887 56899999999999987765
No 205
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.06 E-value=4.9e-05 Score=68.95 Aligned_cols=90 Identities=18% Similarity=0.250 Sum_probs=72.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHH--------------------HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028316 103 TGKNFLRNQDLEKAFTEFKAA--------------------LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 162 (210)
Q Consensus 103 ~g~~~~~~~~~~~A~~~~~~a--------------------l~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 162 (210)
+|.++..+|.|++|...|+++ ++.+++. ....+++.+|.++...|++++|++.|.+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 588888889988888766543 3333332 2255889999999999999999999987
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 163 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+ .....|.++|.++...|++++|+++|..|++..
T Consensus 1131 A-----------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1131 A-----------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred c-----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 6 235789999999999999999999999988654
No 206
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.05 E-value=2.5e-05 Score=60.30 Aligned_cols=100 Identities=8% Similarity=-0.016 Sum_probs=84.3
Q ss_pred HHHHHHHHH----HhC---CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHH
Q 028316 99 SRLKTGKNF----LRN---QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR--EAIKYHSMVLQISER 169 (210)
Q Consensus 99 ~~~~~g~~~----~~~---~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~--~A~~~~~~al~~~~~ 169 (210)
+++..+.+. ... +++++++..+.++++..++ ...++++.+.+....+.++ +++++++++++..
T Consensus 105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-- 176 (306)
T 3dra_A 105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-- 176 (306)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--
Confidence 466667666 555 7899999999999987655 6778999999999999988 9999999998874
Q ss_pred hCCCcchHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhhccC
Q 028316 170 EGEYSGSTEAYGAIADCYTELGD------LERAARFYDKYISRLESD 210 (210)
Q Consensus 170 ~~~~~~~~~~~~~lg~~y~~~g~------~~~A~~~~~~al~~~~~~ 210 (210)
+.+..++++.+.+....++ ++++++++++++...+.|
T Consensus 177 ----~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n 219 (306)
T 3dra_A 177 ----LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN 219 (306)
T ss_dssp ----TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC
T ss_pred ----CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence 6677899999999999887 999999999999877654
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.02 E-value=9e-05 Score=50.84 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 97 LLSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~---~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
..+.++.|+++.... ++++++..+++.++.. .+....++++++|..|++.|+|++|..++++++++.
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 346889999999988 7779999999988842 233578899999999999999999999999999986
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.96 E-value=4.9e-05 Score=47.84 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 98 LSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~---~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
..+...|.+++..++ .++|...+++++.+.+. ...++..+|..++..|+|++|+.+++++++..
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~------~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY------NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 356777888776655 79999999999997665 78899999999999999999999999998764
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.93 E-value=0.00038 Score=52.88 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHH
Q 028316 113 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ-----GKYREAIKYHSMVLQISEREGEYSG-STEAYGAIADC 186 (210)
Q Consensus 113 ~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~lg~~ 186 (210)
...|...+++++++.+ ......++..+|..|... |+.++|..+|++++++. ++ ....++..|..
T Consensus 179 l~~A~a~lerAleLDP----~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln------P~~~id~~v~YA~~ 248 (301)
T 3u64_A 179 VHAAVMMLERACDLWP----SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC------SAHDPDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHHCT----THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC------CTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC----CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC------CCCCchHHHHHHHH
Confidence 5677778888888643 344677999999999995 99999999999999996 54 48899999999
Q ss_pred HHH-cCCHHHHHHHHHHHHHhhc
Q 028316 187 YTE-LGDLERAARFYDKYISRLE 208 (210)
Q Consensus 187 y~~-~g~~~~A~~~~~~al~~~~ 208 (210)
+.. .|+++.|..++++++...+
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCCG
T ss_pred HHHhcCCHHHHHHHHHHHHcCCC
Confidence 988 4999999999999998654
No 210
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.93 E-value=5.5e-06 Score=66.76 Aligned_cols=94 Identities=12% Similarity=0.161 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--H-------
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE--R------- 169 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~------- 169 (210)
++..+|..++..|+|++|..+|.++ ..+..+|.++.++|+|++|++.++++..... .
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 189 (449)
T ss_dssp -------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence 7888999999999999999999865 3678899999999999999999998832210 0
Q ss_pred hCC----------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 170 EGE----------YSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 170 ~~~----------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.++ -...++-...+..+|...|++++|+.++++++..
T Consensus 190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 000 0011122334557889999999999999998764
No 211
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.90 E-value=2.8e-05 Score=60.96 Aligned_cols=101 Identities=9% Similarity=-0.030 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHhCCC
Q 028316 97 LLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ-G-KYREAIKYHSMVLQISEREGEY 173 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~-~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~-~-~~~~A~~~~~~al~~~~~~~~~ 173 (210)
..+++..+.+....+ .+++++..+.+++...++ ...++++.+.+.... + ++++++.++.++++..
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d------ 155 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK------SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD------ 155 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC------
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC------
Confidence 446888899988888 599999999999986554 677899999999887 7 8999999999997653
Q ss_pred cchHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhhcc
Q 028316 174 SGSTEAYGAIADCYTELGDLE--------RAARFYDKYISRLES 209 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~--------~A~~~~~~al~~~~~ 209 (210)
+....++...+.+....|.++ +++++++++++..+.
T Consensus 156 pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 156 PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence 677889999999999988887 999999999987553
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.86 E-value=0.00012 Score=57.56 Aligned_cols=83 Identities=13% Similarity=0.043 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHH
Q 028316 119 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR 198 (210)
Q Consensus 119 ~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~ 198 (210)
....++.........+..+.++..++..+...|++++|+..+++++.+. + ....|..+|.++...|++++|.+
T Consensus 259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln------~-s~~a~~llG~~~~~~G~~~eA~e 331 (372)
T 3ly7_A 259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE------M-SWLNYVLLGKVYEMKGMNREAAD 331 (372)
T ss_dssp HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------C-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------C-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 3344444333333334466778888888888999999999999999884 2 25678899999999999999999
Q ss_pred HHHHHHHhhc
Q 028316 199 FYDKYISRLE 208 (210)
Q Consensus 199 ~~~~al~~~~ 208 (210)
.|++|+.+-+
T Consensus 332 ~~~~AlrL~P 341 (372)
T 3ly7_A 332 AYLTAFNLRP 341 (372)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHhcCC
Confidence 9999998754
No 213
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.72 E-value=5.6e-05 Score=59.25 Aligned_cols=102 Identities=10% Similarity=-0.023 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHH
Q 028316 97 LLSRLKTGKNFLRN-Q-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR--------EAIKYHSMVLQI 166 (210)
Q Consensus 97 ~~~~~~~g~~~~~~-~-~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~--------~A~~~~~~al~~ 166 (210)
..++...+.+.... + ++++++.++.++++..++ ...++++.+.+....+.++ +++++++++++.
T Consensus 123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk------Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK------NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence 44677788888776 7 899999999999985443 6678899999998888887 999999999887
Q ss_pred HHHhCCCcchHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhhccC
Q 028316 167 SEREGEYSGSTEAYGAIADCYTELGD-------LERAARFYDKYISRLESD 210 (210)
Q Consensus 167 ~~~~~~~~~~~~~~~~lg~~y~~~g~-------~~~A~~~~~~al~~~~~~ 210 (210)
. +.+..++++.+.+...+++ ++++++++++++...++|
T Consensus 197 d------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n 241 (349)
T 3q7a_A 197 D------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN 241 (349)
T ss_dssp C------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred C------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC
Confidence 5 6778899999999999987 799999999999887654
No 214
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.70 E-value=0.0005 Score=52.94 Aligned_cols=103 Identities=8% Similarity=-0.084 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc--ch
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS--GS 176 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~ 176 (210)
....+|.++...|++++|+..+.+++...+ ......++.-++.++..+|+.+.|...+++..+..++. .+ ..
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~----~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~--~~~~d~ 175 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDE----AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT--VSGDNE 175 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSC----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH--HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCC----CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc--cccchH
Confidence 356889999999999999999999866221 12366778888999999999999999998876553100 00 12
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhh
Q 028316 177 TEAYGAIADCYTELG--DLERAARFYDKYISRL 207 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g--~~~~A~~~~~~al~~~ 207 (210)
......-|.+....| ++.+|...|++..+.+
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 222333344455445 7778877777766544
No 215
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.63 E-value=1e-05 Score=65.26 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
+...++.+|...|++.++.++++. + ...++.++|..+...|.|++|..+|.++ .
T Consensus 96 i~~~Li~~Y~Klg~l~e~e~f~~~----------p--n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~ 149 (449)
T 1b89_A 96 VETELIFALAKTNRLAELEEFING----------P--NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------S 149 (449)
T ss_dssp -------------CHHHHTTTTTC----------C------------------CTTTHHHHHHHT--------------T
T ss_pred hHHHHHHHHHHhCCHHHHHHHHcC----------C--cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------------h
Confidence 344556666666666666555532 1 2238899999999999999999999977 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 179 AYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
.+..+|.|+..+|+++.|++.++++..
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA~~ 176 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKANS 176 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHcCC
Confidence 688999999999999999999999843
No 216
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.56 E-value=0.001 Score=46.08 Aligned_cols=89 Identities=10% Similarity=0.159 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH-------------------HHHHHHHHHHHHHHHcCCH
Q 028316 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-------------------EEKKAARGLGASLQRQGKY 153 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~-------------------~~~~~~~~lg~~~~~~~~~ 153 (210)
....+.++...|..++..++|.+|..+|++++++.+.+.... ...+..+.++.||...+++
T Consensus 59 p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~ 138 (167)
T 3ffl_A 59 PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD 138 (167)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH
Confidence 344677889999999999999999999999999988542211 1236789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q 028316 154 REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 188 (210)
Q Consensus 154 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 188 (210)
++|+..++.. . ...........||+.|.
T Consensus 139 ~~Ai~~Le~I---p----~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 139 KDAIAILDGI---P----SRQRTPKINMLLANLYK 166 (167)
T ss_dssp HHHHHHHHTS---C----GGGCCHHHHHHHHHHCC
T ss_pred HHHHHHHhcC---C----chhcCHHHHHHHHHHhc
Confidence 9999998754 1 11234566677777653
No 217
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.47 E-value=0.0013 Score=50.67 Aligned_cols=104 Identities=7% Similarity=-0.048 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--
Q 028316 97 LLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE-- 172 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-- 172 (210)
....+..|++....| ++.+|...|++..+ +..+ +.....+.+ ++..+|++++|...++..++.....+.
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~ 248 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQ---TFPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKE 248 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccc
Confidence 334455566676666 99999999999655 3222 223334444 899999999999999987766433222
Q ss_pred --CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 173 --YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 173 --~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
.+..+.++.|+..+...+|+ +|.++++++.+..++
T Consensus 249 ~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 249 NAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred cCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 26678999999999999998 899999999887664
No 218
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0074 Score=48.91 Aligned_cols=112 Identities=9% Similarity=-0.046 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-CCc
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-EYS 174 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~ 174 (210)
.+.....++.+|...|++.+|.........-.....+.......+.....+|...+|+.+|...++++........ ...
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 4556678999999999999999999888765555567777888999999999999999999999999864443332 233
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 175 GSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.....+...|..+...++|.+|-.+|-.+.+..
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 466788899999999999999999998887643
No 219
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.39 E-value=0.00068 Score=44.86 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 136 EKKAARGLGASLQRQGKYRE---AIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~---A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
...+.+++|+++...++... ++..++..++.. .....-++++.+|..++++|+|++|+.+++..+++-|.
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~----~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 45567777887777665554 777666654321 11246678888888888888888888888888876553
No 220
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0015 Score=52.69 Aligned_cols=106 Identities=9% Similarity=0.049 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
+...+|..|+..|+++.|.+.|.+....+...+ .....+..+-.++...+++..+..+..++-......+++.....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~---~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG---AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC---SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 356799999999999999999999888665432 35667888889999999999999999999887766666555666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 179 AYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.....|..+...++|..|..+|-.+...+
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 77778888999999999999998776543
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.24 E-value=0.00045 Score=52.45 Aligned_cols=76 Identities=14% Similarity=0.018 Sum_probs=63.5
Q ss_pred cccchHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 028316 89 IVDPKKEELLSRLKTGKNFLRN-----QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSM 162 (210)
Q Consensus 89 ~~~~~~~~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~ 162 (210)
.++++-....++..+|..|... |+.++|..+|++|+.+.+. ....+++..|..+.. .++++.|..++++
T Consensus 191 eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~-----~~id~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 191 DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA-----HDPDHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT-----TCSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC-----CCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4566766777899999999995 9999999999999998764 126677888998877 5999999999999
Q ss_pred HHHHHHH
Q 028316 163 VLQISER 169 (210)
Q Consensus 163 al~~~~~ 169 (210)
++.....
T Consensus 266 AL~a~p~ 272 (301)
T 3u64_A 266 ALAIDPE 272 (301)
T ss_dssp HHHCCGG
T ss_pred HHcCCCC
Confidence 9987644
No 222
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.00 E-value=0.006 Score=40.58 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 137 KKAARGLGASLQRQGKY---REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..+.+++|++.....+. .+++..++..++.. ....-++++.+|..+.++|+|++|..+.+..+++-+
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 34555566665554433 34666665554421 223556677777777777777777777766665543
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.93 E-value=0.0043 Score=48.82 Aligned_cols=106 Identities=10% Similarity=-0.004 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHHHH
Q 028316 96 ELLSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---G-KYREAIKYHSMVLQISE 168 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~---~-~~~~A~~~~~~al~~~~ 168 (210)
.+..++..|..+...+ ++.+|+..|++|+++-+. .+.++..++.+|... + .......-..++++...
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~------~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE------FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4455666677666544 468999999999997655 455666666665421 1 11223333444444333
Q ss_pred HhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 169 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 169 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.....+..+.++..+|..+...|++++|+.++++|+.+-
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 333446678889999999998999999999999999874
No 224
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.91 E-value=0.017 Score=38.86 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028316 136 EKKAARGLGASLQRQGKY---REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 209 (210)
...+.+++++++....+. .+++..++..++. +....-++++.+|..++++|+|++|..+.+..+++-+.
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 455667777777665544 3577777766552 22346678888888888888888888888887776543
No 225
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.84 E-value=0.13 Score=40.94 Aligned_cols=98 Identities=15% Similarity=0.087 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 028316 110 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 189 (210)
Q Consensus 110 ~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 189 (210)
-+..+.-++...++++-+..-+-.+.....-..+|..|+..|+|.+|+..+.+..+..++.++.....+++.....+|..
T Consensus 72 ~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~ 151 (394)
T 3txn_A 72 DAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA 151 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence 35566667777888887776444444455666899999999999999999999999888777767788899999999999
Q ss_pred cCCHHHHHHHHHHHHHhh
Q 028316 190 LGDLERAARFYDKYISRL 207 (210)
Q Consensus 190 ~g~~~~A~~~~~~al~~~ 207 (210)
++++.++...+.+|....
T Consensus 152 ~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 152 LSNLPKARAALTSARTTA 169 (394)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhh
Confidence 999999999999987654
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.83 E-value=0.027 Score=37.18 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhCCCHHH---HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 98 LSRLKTGKNFLRNQDLEK---AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~---A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.+.++.|++.....+... ++..++..+.- +++...-+.++.+|..+++.|+|++|..+++..+++.
T Consensus 36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 357888999988877665 66666654441 2244677899999999999999999999999999885
No 227
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.057 Score=46.56 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028316 138 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 203 (210)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 203 (210)
..+...+..+...|+|+-|+.+.++|.... |....+|+.|+.||..+|+|+.|+-.++.+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a------PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELA------LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcC------chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 356666788888999999999999999987 888899999999999999999999877654
No 228
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.11 E-value=0.069 Score=37.23 Aligned_cols=95 Identities=13% Similarity=0.118 Sum_probs=70.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHH---------
Q 028316 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ--ISER--------- 169 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~~--------- 169 (210)
+-++...+..|.|..|+..+.+. + .+.+.+.-..||...+||.+|+..+++.+. +.++
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~l--------N---T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ 105 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHKL--------N---TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE 105 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC--------C---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred hhhhhhhhhcchHhHHHHHHHhc--------c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence 34577788889998887766431 1 345677889999999999999999999982 2211
Q ss_pred -hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 170 -EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 170 -~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.-+....--.+..+|.+....|+-++|+.+|.....+
T Consensus 106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 0122234456888999999999999999999887654
No 229
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.02 E-value=0.12 Score=42.46 Aligned_cols=98 Identities=9% Similarity=0.037 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
.+..+-..|...|++++|...|++..+ .+-.+ ...+|+.+=..|...|+.++|...|++..+. +- .....
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----G~-~Pd~~ 176 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKA----FGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVES----EV-VPEEP 176 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TC-CCCHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhc----CC-CCCHH
Confidence 456667788899999999999988654 22222 3457788888899999999999999987542 22 33457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 179 AYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.|..+-..|...|+.++|.+.+++..+.
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999987653
No 230
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.79 E-value=0.18 Score=43.11 Aligned_cols=105 Identities=8% Similarity=0.019 Sum_probs=66.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHh--------cCC--------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028316 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQN--------VKD--------PIEEKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~--------~~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
++..+......|++++|...|++++..... ... ......++...+......|+.+.|...|.+|
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455677777889999999999999986421 100 0113335556666666778888888888888
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Q 028316 164 LQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLES 209 (210)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~ 209 (210)
++... ......|...|.+....+ +.+.|...|+++++.+++
T Consensus 461 ~~~~~-----~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 461 RRLKK-----LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHTGG-----GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred HHhcC-----CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 76510 112244555555555443 367777777777766553
No 231
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.73 E-value=0.037 Score=45.44 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 165 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 165 (210)
++..+|........++.|..+|.+|..+.+. .+..++.+|.+....|+.-+|+-+|-+++-
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~------~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS------NGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC------CCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 4577999999999999999999999998877 666788999999999999999999988874
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.72 E-value=0.25 Score=32.82 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 97 LLSRLKTGKNFLRNQDL---EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~---~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
..+.++.|++.....+. .+++..++..+.. ++...-+.++.+|..+++.|+|++|..+.+..+++.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-----~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 34678888888877654 4667777665542 244567899999999999999999999999998775
No 233
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.70 E-value=0.1 Score=44.60 Aligned_cols=99 Identities=12% Similarity=0.029 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGST 177 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~ 177 (210)
++...+......++.+.|...|.+|++..+.. ....+...+..-... ++++.|...|+++++.. +...
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-----~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~------p~~~ 504 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-----TPDIYLENAYIEYHISKDTKTACKVLELGLKYF------ATDG 504 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-----CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH------TTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC------CCch
Confidence 34444555666788899999999988742111 123444555555554 45899999999998876 4445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 178 EAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
..+...+......|+.+.|...|++|+...+
T Consensus 505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 505 EYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 5666777777788999999999999987654
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.43 E-value=0.34 Score=32.59 Aligned_cols=66 Identities=12% Similarity=0.218 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhCCCHH---HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 97 LLSRLKTGKNFLRNQDLE---KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~---~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
..+.++.|++.....+.+ +++..++..+. . ++...-+.++.+|..++++|+|++|..+.+..+++.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~---~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---E--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH---H--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 336788888888777644 56666666555 2 233467789999999999999999999999998875
No 235
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.36 E-value=0.076 Score=43.60 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
...+.++|.+.+....++.|..+|.+|..+. |.....|+.+|.+....|+.-.|.-+|-+++..
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhC------CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 3477899999999999999999999999987 777889999999999999999999999998854
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.97 E-value=1.2 Score=36.04 Aligned_cols=83 Identities=13% Similarity=-0.000 Sum_probs=66.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028316 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
.+....+..+......|...+++.+|...+.++...... ...+......+...|..+...++|.+|-.+|.++.+....
T Consensus 171 ~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 171 MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 445556777788899999999999999999998654444 4455667778889999999999999999999999887765
Q ss_pred hCCC
Q 028316 170 EGEY 173 (210)
Q Consensus 170 ~~~~ 173 (210)
.++.
T Consensus 251 ~~d~ 254 (445)
T 4b4t_P 251 KSDE 254 (445)
T ss_dssp HSCH
T ss_pred cCCH
Confidence 5543
No 237
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.038 Score=45.34 Aligned_cols=77 Identities=10% Similarity=0.006 Sum_probs=60.3
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 131 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 131 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
.|....+..++.+-+.|...+.|++|..+..++. ..............++.+|.++.-+++|.+|.+++..|+...+
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 4666778888999999999999999999999883 1111111123456788999999999999999999999987554
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.74 E-value=0.43 Score=32.51 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q 028316 114 EKAFTEFKAALELAQNVK--DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 191 (210)
Q Consensus 114 ~~A~~~~~~al~l~~~~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 191 (210)
++-.+.|++|+...+-.. ....-+..+...+.. ...+|.++|.+.|+.++.+ ....+.++..-|..-..+|
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~------hKkFAKiwi~~AqFEiRqg 108 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN------CKKFAFVHISFAQFELSQG 108 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH------CTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHcc
Confidence 777788888888654322 222223334444433 5568999999999999886 1334888999999999999
Q ss_pred CHHHHHHHHHHHHHhhcc
Q 028316 192 DLERAARFYDKYISRLES 209 (210)
Q Consensus 192 ~~~~A~~~~~~al~~~~~ 209 (210)
+..+|.+.+.+|+...+.
T Consensus 109 nl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 109 NVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CHHHHHHHHHHHHHTTCB
T ss_pred cHHHHHHHHHHHhccCCC
Confidence 999999999999987654
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.55 E-value=1.4 Score=34.89 Aligned_cols=106 Identities=12% Similarity=0.052 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh-----c-CChHH----------HHHHHHHHHHHHHHcCCHHHHHHH
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-----V-KDPIE----------EKKAARGLGASLQRQGKYREAIKY 159 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~-----~-~~~~~----------~~~~~~~lg~~~~~~~~~~~A~~~ 159 (210)
.+......|......++.+.|...+.+|+.+.+- . ...+. ...+...++..+...|++.+++..
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444455566566778999999999999887632 1 11111 122455677888899999999999
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 160 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 160 ~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
+...+... |..-.++..+-.++...|+..+|+..|+++...+
T Consensus 194 l~~~~~~~------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 194 LEALTFEH------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHS------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99997764 6667789999999999999999999999987754
No 240
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.71 E-value=0.17 Score=40.72 Aligned_cols=88 Identities=16% Similarity=0.071 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHH
Q 028316 118 TEFKAALELAQN-VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA 196 (210)
Q Consensus 118 ~~~~~al~l~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 196 (210)
+.+...+..+.+ .........++..+|..|...|+++.|.+.|.+...... ......+.+..+-.++...+++..+
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~---~~~~kid~~l~~irl~l~~~d~~~~ 187 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI---STGAKIDVMLTIARLGFFYNDQLYV 187 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT---CCCSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhccHHHH
Confidence 344455554443 222233455788999999999999999999999866542 2345778899999999999999999
Q ss_pred HHHHHHHHHhhc
Q 028316 197 ARFYDKYISRLE 208 (210)
Q Consensus 197 ~~~~~~al~~~~ 208 (210)
..++.++.....
T Consensus 188 ~~~~~ka~~~~~ 199 (429)
T 4b4t_R 188 KEKLEAVNSMIE 199 (429)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhh
Confidence 999999977653
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.08 E-value=0.31 Score=42.10 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
.+...+......|+|+.|+...++|+..++. ...+++.|+.+|..+|||+.|+-.+...
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs------eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALD------SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS------CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCch------hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4555677788899999999999999998876 7889999999999999999999877765
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=92.97 E-value=1.6 Score=30.55 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HH----------HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALE--LA----------QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~--l~----------~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 164 (210)
+.+.+..+.||...++|.+|+...++.+. +- .-.-|+...--.+..+|.++.+.|+-++|+.++..+.
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 44677889999999999999999999882 11 1112334445577889999999999999999999885
Q ss_pred H
Q 028316 165 Q 165 (210)
Q Consensus 165 ~ 165 (210)
.
T Consensus 142 ~ 142 (242)
T 3kae_A 142 G 142 (242)
T ss_dssp H
T ss_pred C
Confidence 3
No 243
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.48 E-value=1.4 Score=39.44 Aligned_cols=100 Identities=17% Similarity=0.144 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
.+..+=..|+..|+.++|...|.+.-....+ +-.+ ...+|+-+-..|.+.|+.++|.+.|++..+. +- .....
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~k-G~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----G~-~PDvv 201 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK-RKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDA----GL-TPDLL 201 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH-HTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC-CCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-CCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCcHH
Confidence 4566677899999999999999776543221 1111 3457888888999999999999999988432 23 33456
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 028316 179 AYGAIADCYTELGD-LERAARFYDKYIS 205 (210)
Q Consensus 179 ~~~~lg~~y~~~g~-~~~A~~~~~~al~ 205 (210)
+|..+=.++...|+ .++|.+.+++..+
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 78888888999887 5788899988765
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.21 E-value=2.1 Score=29.90 Aligned_cols=46 Identities=20% Similarity=0.062 Sum_probs=31.3
Q ss_pred HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028316 108 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164 (210)
Q Consensus 108 ~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 164 (210)
...|+++.|.+..++. + ....+..+|......|+++-|..+|+++-
T Consensus 16 L~lg~l~~A~e~a~~l-------~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------N----DSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3567777776654432 1 23356778888888888888888887763
No 245
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=92.20 E-value=0.99 Score=37.00 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q 028316 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 191 (210)
Q Consensus 112 ~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 191 (210)
..++|...|++... .+-.+ ...+|+.+-..|.+.|+.++|...|++..+. +- .....+|..+=..|...|
T Consensus 85 ~l~~A~~lf~~M~~----~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~-~Pd~~tyn~lI~~~~~~g 154 (501)
T 4g26_A 85 GLSRGFDIFKQMIV----DKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF----GI-QPRLRSYGPALFGFCRKG 154 (501)
T ss_dssp HHHHHHHHHHHHHH----TTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC-CCCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHH----hCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCccceehHHHHHHHHCC
Confidence 46777777766543 22222 3457888889999999999999999987432 22 334577888999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 028316 192 DLERAARFYDKYISR 206 (210)
Q Consensus 192 ~~~~A~~~~~~al~~ 206 (210)
+.++|.+.|++..+.
T Consensus 155 ~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 155 DADKAYEVDAHMVES 169 (501)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987653
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.80 E-value=3.5 Score=31.60 Aligned_cols=102 Identities=12% Similarity=-0.011 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhCC-Ccch
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-REAIKYHSMVLQISEREGE-YSGS 176 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~~~~~~-~~~~ 176 (210)
.++.-+..+...|++..|.+...-.++...+.+.+.. ......+..++.....- ..=..+.+++++...+.++ ..+.
T Consensus 55 lL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~-~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gd 133 (312)
T 2wpv_A 55 LISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD-DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGD 133 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS-HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCC
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCC
Confidence 4456667788889999888877777777776554442 33455566665443322 2246788888888887655 5678
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 028316 177 TEAYGAIADCYTELGDLERAARFYD 201 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~ 201 (210)
+..+..+|..|.+.|++.+|..+|-
T Consensus 134 p~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 134 PYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 8999999999999999999999884
No 247
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.35 E-value=0.4 Score=39.44 Aligned_cols=74 Identities=14% Similarity=0.029 Sum_probs=58.5
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
|...++..++-+=..|...+.|++|.....++. .+.. ......+..++++|.++..+++|.+|.+++..|++.+
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 344567677888899999999999999998874 2322 2334457788999999999999999999999997543
No 248
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=91.15 E-value=0.61 Score=28.19 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028316 141 RGLGASLQRQGKYREAIKYHSMVLQISE 168 (210)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~ 168 (210)
...|.-.-..|+|++|+.+|.++++...
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie~l~ 50 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIEVLA 50 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3445556789999999999999988764
No 249
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=91.04 E-value=3 Score=34.04 Aligned_cols=103 Identities=7% Similarity=-0.137 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH----------------------------------HHHHHHHHHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI----------------------------------EEKKAARGLG 144 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~----------------------------------~~~~~~~~lg 144 (210)
.++..+......|+.+.|...|++|+.. +....-. .....+...+
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~ 293 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL 293 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence 4566677788899999999999999987 4421100 0001222233
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Q 028316 145 ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLES 209 (210)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~ 209 (210)
......++.+.|...|+++ +. .......+...|......+ +.+.|...|+.+++.+++
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~~------~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-GN------EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-TT------SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCHHHHHHHHHHh-hC------CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence 3333466778888888887 21 1223455666666655555 699999999999876543
No 250
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=91.00 E-value=0.63 Score=28.09 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028316 141 RGLGASLQRQGKYREAIKYHSMVLQISE 168 (210)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~ 168 (210)
...|.-.=..|+|++|+.+|.++++...
T Consensus 15 v~~Ave~D~~g~y~eAl~lY~~aie~l~ 42 (83)
T 2v6y_A 15 AILAVKADKEGKVEDAITYYKKAIEVLS 42 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3344555789999999999999987764
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.95 E-value=4.5 Score=31.31 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhC-CCcch
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-REAIKYHSMVLQISEREG-EYSGS 176 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~~~~~-~~~~~ 176 (210)
.++.-+..+...|++..|.+...-.+++..+.+.+.. ......+..++.....- ..=..+.+++++...+.+ ...+.
T Consensus 57 LL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~-~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gd 135 (336)
T 3lpz_A 57 ILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD-GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGD 135 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCC
Confidence 4455566777777777777766666666655443322 23444555555444321 223567788888887754 35678
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Q 028316 177 TEAYGAIADCYTELGDLERAARFY 200 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~ 200 (210)
+..+..+|..|.+.+++.+|..+|
T Consensus 136 p~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 136 PELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHH
Confidence 899999999999999999999987
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.33 E-value=1.3 Score=40.29 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------------HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALEL-----------------AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 161 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l-----------------~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 161 (210)
..+.+|.++...|++++|..+|+++-.- .............|..+...+-+.+.++.++...+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3577999999999999999999876321 11111111123467788889999999999999999
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028316 162 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD 201 (210)
Q Consensus 162 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 201 (210)
.|++.... ++.......|.++=..+...|+|++|...+.
T Consensus 924 lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 924 LADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 99876421 1212244568888888999999999977664
No 253
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.34 E-value=7.9 Score=33.03 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028316 138 KAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
..+..+|..+.+.++++.|..+|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 46788999999999999999999886
No 254
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.99 E-value=7 Score=30.90 Aligned_cols=102 Identities=7% Similarity=0.030 Sum_probs=71.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028316 105 KNFLRNQDLEKAFTEFKAALELAQNV-----------KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 173 (210)
Q Consensus 105 ~~~~~~~~~~~A~~~~~~al~l~~~~-----------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 173 (210)
.+.....+.++|++++++........ ............++..|...++.++|..+.+++-......++.
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 34556778899998887654332211 0112234456678999999999999999999998887776655
Q ss_pred cc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 174 SG--STEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 174 ~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
+. ....|...+..|...+++..+..+.-.++..
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 43 4455666777788889998887776666543
No 255
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=88.18 E-value=1.7 Score=26.36 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=29.5
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 028316 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 128 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~ 128 (210)
+|....+..+...|.-.-..|+|++|+.+|..+++.+-
T Consensus 10 ~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll 47 (86)
T 4a5x_A 10 DPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLL 47 (86)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45566676777788888888999999999998888654
No 256
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.83 E-value=3.3 Score=35.43 Aligned_cols=25 Identities=20% Similarity=0.237 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAA 123 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~a 123 (210)
.+..+|..+...++++.|+..|.++
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5778999999999999999998875
No 257
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=87.57 E-value=2.5 Score=34.54 Aligned_cols=91 Identities=14% Similarity=0.010 Sum_probs=54.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028316 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISEREGEYSGSTE 178 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~ 178 (210)
+...+......++.+.|...|++| . .+. . ....+...+..-...+ +.+.|...|+.+++.. +....
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~-~~~--~---~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~------~~~~~ 355 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-G-NEG--V---GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH------PDSTL 355 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-T-TSC--C---CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC------TTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-h-CCC--C---ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC------CCCHH
Confidence 333444454567788888888888 2 111 1 1223444455444444 6999999999998754 22233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 028316 179 AYGAIADCYTELGDLERAARFYDKY 203 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~a 203 (210)
.+...+......|+.+.|...|+++
T Consensus 356 ~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444455556677777777666654
No 258
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=87.00 E-value=1.7 Score=26.76 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028316 139 AARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
.+...|.-.-..|+|++|+.+|..+++....
T Consensus 17 ~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 17 AVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3444555567899999999999999887643
No 259
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=86.77 E-value=5.2 Score=31.31 Aligned_cols=83 Identities=20% Similarity=0.100 Sum_probs=56.5
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028316 99 SRLKTGKNFLR--NQDLEKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 99 ~~~~~g~~~~~--~~~~~~A~~~~~~al~l~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
++-++|.+--. ......++..|.+|+..+++. +|.+ ..-|.++|..++..+++.+|+.++-.+-...+..+....
T Consensus 257 ALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H--vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~re 334 (472)
T 3re2_A 257 AIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH--IYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKD 334 (472)
T ss_dssp HHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGG
T ss_pred hhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC--ccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCcc
Confidence 44555544322 222334788899999988874 3443 345677888999999999999999999888877665555
Q ss_pred hHHHHHHH
Q 028316 176 STEAYGAI 183 (210)
Q Consensus 176 ~~~~~~~l 183 (210)
...+|..+
T Consensus 335 DeEIYKEf 342 (472)
T 3re2_A 335 DEEMYKEF 342 (472)
T ss_dssp GHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 260
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=85.59 E-value=7.6 Score=30.43 Aligned_cols=87 Identities=13% Similarity=-0.015 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHH
Q 028316 121 KAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR 198 (210)
Q Consensus 121 ~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~ 198 (210)
++.+=+.-..|.-..-+.++.+||.+--... ....++..|.+++..++..-.. ....-|..+|-+++..+++.+|+.
T Consensus 239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n-~HvYPYtylgGy~yR~~~~reAl~ 317 (472)
T 3re2_A 239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSD-HHIYPYTYLGGYYYRKKKYYEAIA 317 (472)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTT-CCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhcc-CCccchhhhhhhhhhcchHHHHHH
Confidence 3334344344444445667777777654422 2234899999999998775432 234568889999999999999999
Q ss_pred HHHHHHHhhc
Q 028316 199 FYDKYISRLE 208 (210)
Q Consensus 199 ~~~~al~~~~ 208 (210)
++..|-+..+
T Consensus 318 ~WA~Aa~Vi~ 327 (472)
T 3re2_A 318 SWVDAGYVAG 327 (472)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9988876543
No 261
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=84.96 E-value=2.1 Score=27.70 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028316 140 ARGLGASLQRQGKYREAIKYHSMVLQISE 168 (210)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 168 (210)
+...|.-.-..++|++|+.+|..+++...
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Aie~l~ 49 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAVQYFL 49 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 34445555789999999999999988764
No 262
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=84.88 E-value=2.6 Score=25.36 Aligned_cols=30 Identities=17% Similarity=0.010 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028316 139 AARGLGASLQRQGKYREAIKYHSMVLQISE 168 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 168 (210)
.+...|.-.-..|+|++|+.+|..+++...
T Consensus 15 ~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~ 44 (85)
T 2v6x_A 15 ELVQKAIDLDTATQYEEAYTAYYNGLDYLM 44 (85)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 344445555789999999999999988753
No 263
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.43 E-value=9.5 Score=33.97 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------------HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALEL-----------------AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 161 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l-----------------~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 161 (210)
..+.+|.+|...|++++|..+|++|-.- .............|.++..++-..+-++.++...+
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4577999999999999999999876421 11111111233466778888888888888888888
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q 028316 162 MVLQISEREGEYSGSTEAYGAIADCYTEL 190 (210)
Q Consensus 162 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 190 (210)
.|++... .++.......+.++=..+...
T Consensus 922 lAI~~~~-~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 922 LADASKE-TDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHTCC-SCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcc-cCCccchHHHHHHHHHHHhhC
Confidence 8887653 122223444555554444433
No 264
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=82.91 E-value=2.4 Score=25.20 Aligned_cols=33 Identities=9% Similarity=0.305 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
+.....+|.-|...|+|+.|+.||+.+++...+
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k 44 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNK 44 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 334566788888888888888888888775543
No 265
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=82.75 E-value=1.2 Score=26.49 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028316 139 AARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
-...+|+=|...|+|+.|+.||+.+++.
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3456677777777777777777766544
No 266
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=82.60 E-value=8.7 Score=30.66 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHH
Q 028316 114 EKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA 184 (210)
Q Consensus 114 ~~A~~~~~~al~l~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 184 (210)
+.++..|++|+..+++. ++.+ ..-|.++|..++..++|.+|+.++-++-......+........|..+-
T Consensus 281 p~~~~Lf~~AI~~ar~~Y~~~h--vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~ 350 (489)
T 4gq4_A 281 PDPLTLYHKGIASAKTYYRDEH--IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFF 350 (489)
T ss_dssp CCHHHHHHHHHHHHHHHSTTCC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCc--ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHH
Confidence 34677899999988874 3333 445778899999999999999999999888776655444445554443
No 267
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=82.54 E-value=5.6 Score=27.70 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=38.2
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 148 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 148 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
...|+++.|.+..++. .....|..+|......|+++-|.++|.++-+
T Consensus 16 L~lg~l~~A~e~a~~l-----------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----------NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHh-----------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 4688999888886543 1246899999999999999999999987644
No 268
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=82.46 E-value=2.7 Score=25.74 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028316 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
.+-.+...+..+...|.|++|+++.+++...
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444556666667777777777777776444
No 269
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.64 E-value=15 Score=32.64 Aligned_cols=71 Identities=11% Similarity=-0.055 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028316 139 AARGLGASLQRQGKYREAIKYHSMVLQI-----------------SEREGEYSGSTEAYGAIADCYTELGDLERAARFYD 201 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~-----------------~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 201 (210)
..+-+|.+|...|++++|..+|++|-.- .............|..+..++...+-++-+++..+
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3477999999999999999999987411 01111112234578899999999999999999999
Q ss_pred HHHHhhcc
Q 028316 202 KYISRLES 209 (210)
Q Consensus 202 ~al~~~~~ 209 (210)
.|++....
T Consensus 922 lAI~~~~~ 929 (950)
T 4gq2_M 922 LADASKET 929 (950)
T ss_dssp HHHHTCCS
T ss_pred HHHhhccc
Confidence 99987653
No 270
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=81.61 E-value=11 Score=30.01 Aligned_cols=76 Identities=7% Similarity=-0.048 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 131 KDPIEEKKAARGLGASLQRQGK--YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 131 ~~~~~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
|.-...+.++.+||.+--.... .+.++..|++|+...+..-. .....-|..+|-.+...+++.+|+.++..|-+..
T Consensus 256 Ghl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~-~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi 333 (489)
T 4gq4_A 256 GHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYR-DEHIYPYMYLAGYHCRNRNVREALQAWADTATVI 333 (489)
T ss_dssp TTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHST-TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cchhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcc-cCcccceeecchHHHHhhhHHHHHHHhhhhhhhh
Confidence 3333345566666666543222 23478899999999887543 2335678889999999999999999998886654
No 271
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.40 E-value=10 Score=29.77 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCCCcc
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE-REGEYSG 175 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~ 175 (210)
..+...++..+...|++++++..+.+.+...+- .-..+..+-.++...|+..+|+..|++.-+... +.+-.|.
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~------~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPY------REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 334566778889999999999999988775332 344677788889999999999999999987654 4555554
No 272
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.21 E-value=3.3 Score=26.61 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028316 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 169 (210)
.+..+.+.|...=..|+-++|+.+|++++....+
T Consensus 21 ~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~ 54 (116)
T 2dl1_A 21 KAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLR 54 (116)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 3334455555566777777777777777766543
No 273
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=81.05 E-value=5.5 Score=23.89 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 128 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~ 128 (210)
...+..+...|.-.-..|+|++|+.+|.++++...
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~ 50 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEVLA 50 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34566677788888889999999999999988654
No 274
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=80.53 E-value=15 Score=29.46 Aligned_cols=71 Identities=7% Similarity=-0.033 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 136 EKKAARGLGASLQRQGKY--REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
-+.++.+||.+--...-. ..++..|.+++..++..-. .....-|..+|-+|+..+++.+|+.++..|-+..
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~-n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi 348 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYR-DEHIYPYMYLAGYHCRNRNVREALQAWADTATVI 348 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHST-TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhc-cCCccceeecchhhhhcchHHHHHHHHHHHHHHH
Confidence 344555555544332211 2377888888887766433 2233557778888888888888888887776554
No 275
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=80.30 E-value=8.3 Score=30.83 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Q 028316 115 KAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA 182 (210)
Q Consensus 115 ~A~~~~~~al~l~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 182 (210)
.++..|.+|+..++.. +|.+ ..-|.++|..++..+++.+|+.++-.+-...+..+......++|..
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~H--vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKE 363 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEH--IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKE 363 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCC--ccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 4678899999988764 3433 3456778889999999999999999998888776665555555544
No 276
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=79.08 E-value=6.3 Score=23.59 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
.+..+...|.-.-..|+|++|+.+|..+++.+..
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4556677788888899999999999999886543
No 277
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=78.31 E-value=13 Score=25.23 Aligned_cols=68 Identities=9% Similarity=0.013 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.+..+..+..-|.. ...++.++|.+.|+.++++.++ . +..+...|..-..+|+..+|...+.+|+-..
T Consensus 57 wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKk----F--AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 57 NESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKK----F--AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp CHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTT----B--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHH----H--HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 34456666666644 4558999999999999997333 2 6667777777788999999999999998764
No 278
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=78.22 E-value=13 Score=26.45 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR 154 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 154 (210)
...+.-.+.+|..+...++|.+|.+.+..|+..+++.+ ......++..+--+-+..|+.+
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~-~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS-QKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH-HHHHHHHHHHHHHHHHHcCCCC
Confidence 34555678899999999999999999999999877532 2223345555555555566653
No 279
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=76.96 E-value=9.5 Score=23.34 Aligned_cols=38 Identities=8% Similarity=0.207 Sum_probs=31.0
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028316 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
+....+..+...|.-.-..++|++|+.+|..+++.+..
T Consensus 10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34446667788898899999999999999999997654
No 280
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.75 E-value=16 Score=33.14 Aligned_cols=70 Identities=11% Similarity=-0.063 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028316 139 AARGLGASLQRQGKYREAIKYHSMVLQI-----------------SEREGEYSGSTEAYGAIADCYTELGDLERAARFYD 201 (210)
Q Consensus 139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~-----------------~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 201 (210)
..+-+|.++...|++++|..+|+++..- .............|..+..++...|.++.+++...
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3477999999999999999999887311 11111122345668888899999999999999999
Q ss_pred HHHHhhc
Q 028316 202 KYISRLE 208 (210)
Q Consensus 202 ~al~~~~ 208 (210)
.|++...
T Consensus 924 lAi~~~~ 930 (1139)
T 4fhn_B 924 LADASKE 930 (1139)
T ss_dssp HHHHHCC
T ss_pred HHHHhcc
Confidence 9998764
No 281
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=76.56 E-value=6.4 Score=23.75 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028316 134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
...+..+...|.-.-..|+|++|+.+|..+++.
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345556666666677788888888888888654
No 282
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=74.01 E-value=17 Score=29.47 Aligned_cols=94 Identities=10% Similarity=-0.044 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---hCCCc--ch
Q 028316 112 DLEKAFTEFKAALELAQNVKD----------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER---EGEYS--GS 176 (210)
Q Consensus 112 ~~~~A~~~~~~al~l~~~~~~----------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~--~~ 176 (210)
..+.+.....++..++..-.+ ........+.+-.+|++.++...+...++.. +.... ....+ ..
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i-~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNF-QPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTH-HHHCCCSCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHh-ccCCCCcChhhCCccce
Confidence 355666666666666533111 1111223346668899999999888888543 32211 11111 35
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 177 TEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
...++.+|..+.-.++|.+|.+++..|+..
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 567899999999999999999999999987
No 283
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=72.94 E-value=12 Score=22.25 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
...+..+...|.-.-..|+|++|+.+|..+++.+-.
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345666777888888899999999999999996543
No 284
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=72.78 E-value=13 Score=26.41 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.....+++|..++..++|.+|.+.+..|++..
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~ 44 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHC 44 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHC
Confidence 56688899999999999999999999998775
No 285
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=72.31 E-value=29 Score=28.05 Aligned_cols=68 Identities=10% Similarity=-0.013 Sum_probs=50.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH
Q 028316 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQN-----VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI-SE 168 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~-----~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~~ 168 (210)
...+=.+|++.++...+...+ ++++-..- .-........++++|..+...++|.+|.+++..|++. ..
T Consensus 179 ~n~L~kiYFkl~~~~lckni~-k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIF-KNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHH-HTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH-HHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 345568899999998887776 44443211 1122356778899999999999999999999999988 54
No 286
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=72.30 E-value=28 Score=31.57 Aligned_cols=68 Identities=6% Similarity=-0.029 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
...+++.+=..|.+.|+.++|...|.+.-+...+. - .....+|+.+-..|...|+.++|.+.|++..+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG-~-~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-K-LLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH-T-TCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC-C-CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44578888899999999999999998764432211 1 23457899999999999999999999998765
No 287
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=71.86 E-value=15 Score=22.58 Aligned_cols=69 Identities=7% Similarity=-0.059 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 028316 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 171 (210)
+..|..++..|+|=+|-+.++....-.+..........+....|..+...|+. |...+.+++.......
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~ 73 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLP 73 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCC
Confidence 34577778889999999999988875421111122333445556667778888 9999999988765443
No 288
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=70.34 E-value=3.8 Score=24.98 Aligned_cols=28 Identities=7% Similarity=0.175 Sum_probs=16.3
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHHH
Q 028316 140 ARGLGASLQRQ---GKYREAIKYHSMVLQIS 167 (210)
Q Consensus 140 ~~~lg~~~~~~---~~~~~A~~~~~~al~~~ 167 (210)
+.+.|...=.. |+-++|+.+|++.+.-.
T Consensus 19 ~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL 49 (89)
T 3eab_A 19 YISIALRIDEDEKAGQKEQAVEWYKKGIEEL 49 (89)
T ss_dssp HHHHHHHHHHHSCSSSGGGSHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccCCCHHHHHHHHHHHHHHH
Confidence 44445455556 66666666666665544
No 289
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=70.33 E-value=10 Score=24.37 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
...+..+...|.-.-..++|++|+.+|..+++++-.
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 345666777888888889999999999999997654
No 290
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=68.40 E-value=25 Score=23.96 Aligned_cols=72 Identities=6% Similarity=-0.088 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh--HHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEEKKAA-RGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~--~~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
..+..|..++..|+|=+|-+.++..+.-...-.+. .....+. ...|..+...|+..-|...+.+++......
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 45667888888999999999999888743221112 2233344 455666788999999999999998876543
No 291
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=68.12 E-value=32 Score=24.96 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=36.4
Q ss_pred cCCHHHHHHHHHHHHHHHHH--hCCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Q 028316 150 QGKYREAIKYHSMVLQISER--EGEYSGSTEAYGAIADCYT-ELGDLERAARFYDKYISRL 207 (210)
Q Consensus 150 ~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~ 207 (210)
.|+-+.|...|+.|.+++.. ...+|...-...|.+..|+ -+++.++|....++|+++.
T Consensus 138 ~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 138 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 45577788888888887764 2223333344455555544 4678888888887776653
No 292
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=67.34 E-value=8 Score=22.58 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
....+|..+...|++++|..+|-+|+.++.+
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3466888899999999999999999987654
No 293
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=66.86 E-value=19 Score=22.02 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=30.2
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 028316 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 128 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~ 128 (210)
...-..+...-..+..+...|.|++|+.+..++.....
T Consensus 9 ~spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~ 46 (97)
T 2crb_A 9 EGPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLS 46 (97)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 33445566677899999999999999999999888543
No 294
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=66.67 E-value=10 Score=22.16 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028316 182 AIADCYTELGDLERAARFYDKYISRL 207 (210)
Q Consensus 182 ~lg~~y~~~g~~~~A~~~~~~al~~~ 207 (210)
.+|..+...|++++|..+|-+|+...
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 35555555555555555555555543
No 295
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=66.16 E-value=11 Score=23.21 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028316 99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
....+|..+...|+++.|+.+|-+|+.++.+
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3467899999999999999999999998865
No 296
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=63.81 E-value=19 Score=26.94 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=47.0
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 106 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 106 ~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
..+..++.+.|+......++ ..+..+.....+-..++-.|++++|...++.+.++.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCCHHHHHHHHHHHHH------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 46677888888888877766 678888888999999999999999999999887775
No 297
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.67 E-value=54 Score=25.74 Aligned_cols=72 Identities=11% Similarity=0.016 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
...+...++..|...++.+.|..+.+++-......++. ......+...+..|...+++..+...+-..+...
T Consensus 126 ~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 126 ILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 45566788999999999999999999999888887654 3455566667777888899988777766665544
No 298
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=60.78 E-value=38 Score=28.60 Aligned_cols=92 Identities=13% Similarity=0.016 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028316 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 180 (210)
Q Consensus 101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 180 (210)
..+|.-....+..+++...+.+... ...+.. . .-...+.+ ...++++.|..+|.+.-. .........
T Consensus 256 ~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~--~e~~~r~A-lr~~d~~~a~~~~~~l~~------~~~~~~r~~ 322 (618)
T 1qsa_A 256 DIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTS-L--IERRVRMA-LGTGDRRGLNTWLARLPM------EAKEKDEWR 322 (618)
T ss_dssp HHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHH-H--HHHHHHHH-HHHTCHHHHHHHHHHSCT------TGGGSHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHhccc---cCCChH-H--HHHHHHHH-HHCCCHHHHHHHHHHccc------cccccHhHH
Confidence 3345444445534455566655332 222222 1 22333444 456999999998876522 112356678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 181 GAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 181 ~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
+=+|+.+...|+.++|..+|+++..
T Consensus 323 YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 323 YWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8899999999999999999988754
No 299
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=58.18 E-value=29 Score=21.10 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 028316 94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL 147 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~ 147 (210)
+..+......|.-++..++|.+|...|+++..+. .+++..-.+-+.++.|-
T Consensus 50 e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t---en~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 50 EKKARSLIAEGKDLFETANYGEALVFFEKALNLS---DNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc---cCHHHHHHHHHHHHHHH
Confidence 3567778888999999999999999999988743 23444333446677664
No 300
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=56.85 E-value=16 Score=22.46 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028316 141 RGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
..+|..+...|+++.|+.+|-+|+.+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~V 49 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAV 49 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35555555555555555555555444
No 301
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=56.65 E-value=30 Score=27.86 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHh-------CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 154 REAIKYHSMVLQISERE-------GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 154 ~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
+.-+..+++|+...... ..+.....++..+|++|.-++++++|..+.+++++
T Consensus 161 ~~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 161 QQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp HHHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44445555555544211 11345667899999999999999999999999875
No 302
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.29 E-value=43 Score=22.56 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHH---hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCH
Q 028316 117 FTEFKAALELAQ---NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL 193 (210)
Q Consensus 117 ~~~~~~al~l~~---~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 193 (210)
...+++++..+. +.++.+.-...+...+... +.+.+.|.-.. ..+-....+..|-..|..+...|++
T Consensus 48 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~----~~~IG~~~AlfYe~wA~~lE~~g~~ 117 (152)
T 4a1g_A 48 ITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLY----NHGIGTLSSPLYIAWAGHLEAQGEL 117 (152)
T ss_dssp HHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHH----TTTTTTTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHH----HCCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345566666553 3444444444444333321 22555555442 1223345778899999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028316 194 ERAARFYDKYISR 206 (210)
Q Consensus 194 ~~A~~~~~~al~~ 206 (210)
++|...|+.+++.
T Consensus 118 ~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 118 QHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999874
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=56.17 E-value=45 Score=22.77 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=49.3
Q ss_pred HHHHHHHHHH---HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHH
Q 028316 118 TEFKAALELA---QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE 194 (210)
Q Consensus 118 ~~~~~al~l~---~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 194 (210)
..+++++..+ ++..+.+.-...+...+... ++ +.+.|.... ..+-....+..|...|..+...|++.
T Consensus 44 ~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~----~~~IG~~~AlfY~~wA~~lE~~~~~~ 113 (164)
T 2wvi_A 44 TLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLH----NQGIGVSLAQFYISWAEEYEARENFR 113 (164)
T ss_dssp HHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHH----HTTSSTTBHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHH----HCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 3455665544 33445554444555444432 33 444444332 22333557788999999999999999
Q ss_pred HHHHHHHHHHHh
Q 028316 195 RAARFYDKYISR 206 (210)
Q Consensus 195 ~A~~~~~~al~~ 206 (210)
+|...|+.+++.
T Consensus 114 ~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 114 KADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 999999998874
No 304
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=55.54 E-value=85 Score=25.71 Aligned_cols=47 Identities=19% Similarity=0.072 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028316 114 EKAFTEFKAALELAQNVKDP--IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 114 ~~A~~~~~~al~l~~~~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
++|+++|++|++..+++... ......+.+++. +|+.|=++|.+|.+.
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak------~yE~aGDyy~~AA~k 497 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAK------KHEMAGDYYVNAARK 497 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhh------hhhhccHHHHHHHHH
Confidence 57777888888877776533 333333333332 266666666666443
No 305
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=55.14 E-value=62 Score=24.00 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHh-cC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 028316 94 KEELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASLQRQGKYREAIKYH 160 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~l~~~-~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 160 (210)
+..+.-+...|..|...-. -+.|...|++|.+++.. +. ++....-+++.-...|--.++.++|....
T Consensus 143 EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LA 222 (261)
T 3ubw_A 143 ESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLA 222 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344444557777765322 36778899999999864 33 33334444443333344489999999999
Q ss_pred HHHHHHH
Q 028316 161 SMVLQIS 167 (210)
Q Consensus 161 ~~al~~~ 167 (210)
++|+..+
T Consensus 223 k~AFd~A 229 (261)
T 3ubw_A 223 KAAFDDA 229 (261)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887665
No 306
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=54.34 E-value=60 Score=23.61 Aligned_cols=73 Identities=14% Similarity=0.063 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHh-cC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028316 96 ELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASLQRQGKYREAIKYHSM 162 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~l~~~-~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 162 (210)
.+.-+...|..|...-. -+.|...|++|.+++.. +. ++...+-+++.-...|--.++.++|....++
T Consensus 119 kVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~ 198 (234)
T 2br9_A 119 KVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKA 198 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444556777664433 35778899999999974 33 2333343444333444458999999999998
Q ss_pred HHHHHH
Q 028316 163 VLQISE 168 (210)
Q Consensus 163 al~~~~ 168 (210)
++..+-
T Consensus 199 afd~Ai 204 (234)
T 2br9_A 199 AFDDAI 204 (234)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876653
No 307
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=53.73 E-value=83 Score=25.09 Aligned_cols=93 Identities=12% Similarity=0.142 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh-------c--CC----------------------------hHHHHHH
Q 028316 97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-------V--KD----------------------------PIEEKKA 139 (210)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~-------~--~~----------------------------~~~~~~~ 139 (210)
..-+..++..+...++|.+|.-.+-.+..+.-. . +. .......
T Consensus 11 ~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~l 90 (428)
T 2wm9_A 11 KTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMEL 90 (428)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHH
Confidence 334577899999999999998877533322111 0 00 0001113
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 028316 140 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 189 (210)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 189 (210)
+......+.+.+.|+.|+..++..+...+...|....+.++..++.+|..
T Consensus 91 l~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y~~ 140 (428)
T 2wm9_A 91 LEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSK 140 (428)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 33344445556666777777777777666655544555556666655554
No 308
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=53.62 E-value=48 Score=22.30 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=24.3
Q ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 172 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
+.+..+..+..+|..|.+.|+..+|.+...+|-+
T Consensus 120 n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 120 NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3344567778888888888888888877777654
No 309
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=53.01 E-value=67 Score=23.79 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028316 96 ELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQNVKD--PIEEKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~l~~~~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
.+.-+...|..|...-. -+.|...|++|.+++..+.. +....-+++.-...|--+++.++|....+++
T Consensus 145 kVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~A 224 (260)
T 2npm_A 145 KVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEA 224 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444556777664433 35778899999999922332 2233334443333344589999999999998
Q ss_pred HHHH
Q 028316 164 LQIS 167 (210)
Q Consensus 164 l~~~ 167 (210)
+..+
T Consensus 225 fd~A 228 (260)
T 2npm_A 225 FEMA 228 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 310
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=52.87 E-value=40 Score=27.37 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=28.8
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 174 SGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.....++..+|++|.-.|++++|..+.+++++.
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 346678899999999999999999999999863
No 311
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=52.48 E-value=67 Score=23.61 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHh-cC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028316 95 EELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASLQRQGKYREAIKYHS 161 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~l~~~-~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 161 (210)
..+.-+...|..|...-. -+.|...|++|.+++.. +. ++....-+++.-...|--+++.++|....+
T Consensus 119 skVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk 198 (248)
T 3uzd_A 119 SKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAK 198 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344445557777765422 36788899999999864 33 333344444443344445899999999988
Q ss_pred HHHHHHH
Q 028316 162 MVLQISE 168 (210)
Q Consensus 162 ~al~~~~ 168 (210)
+|+..+-
T Consensus 199 ~Afd~Ai 205 (248)
T 3uzd_A 199 TAFDDAI 205 (248)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876653
No 312
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=52.17 E-value=71 Score=23.84 Aligned_cols=107 Identities=11% Similarity=-0.018 Sum_probs=58.8
Q ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028316 91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170 (210)
Q Consensus 91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 170 (210)
..++..+.....+-..++-.|++++|...++-+.++.+. ....+..|..+-.+-.. ..-+-..-....-.
T Consensus 25 R~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~---~~~~a~~yr~lI~aE~~-------R~~vfaG~~~P~~~ 94 (273)
T 1zbp_A 25 KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE---YLPGASQLRHLVKAAQA-------RKDFAQGAATAKVL 94 (273)
T ss_dssp HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHHHHHH-------HHHHTTSCCCEECC
T ss_pred HhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch---hhHHHHHHHHHHHHHHH-------HHHHHcCCCCCCCC
Confidence 345555666777889999999999999999988887554 11111122111111110 00000000000001
Q ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+ .+..-.....-+......|+.++|...-++|.+..+
T Consensus 95 g-~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 95 G-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp C-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred C-CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 1 122233445556666678999999999999987654
No 313
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=52.03 E-value=66 Score=23.43 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhC-----CC-----HHHHHHHHHHHHHHHHh-cC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 028316 94 KEELLSRLKTGKNFLRN-----QD-----LEKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASLQRQGKYREAIKYH 160 (210)
Q Consensus 94 ~~~~~~~~~~g~~~~~~-----~~-----~~~A~~~~~~al~l~~~-~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 160 (210)
+..+.-+...|..|... |+ -+.|...|++|.+++.. +. +|....-+++.-...|--.++.++|....
T Consensus 120 eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lA 199 (236)
T 3iqu_A 120 ESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444445577777643 33 46788899999999864 33 23334444444334444589999999998
Q ss_pred HHHHHHH
Q 028316 161 SMVLQIS 167 (210)
Q Consensus 161 ~~al~~~ 167 (210)
++|+..+
T Consensus 200 k~Afd~A 206 (236)
T 3iqu_A 200 KTTFDEA 206 (236)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887655
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.53 E-value=60 Score=23.43 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=47.3
Q ss_pred HHHHHHHHHHH---hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHH
Q 028316 118 TEFKAALELAQ---NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE 194 (210)
Q Consensus 118 ~~~~~al~l~~---~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 194 (210)
..+++++..+. ++++.+.-...+...+.. -+.+.+.|.-.. ..+-....+..|-..|..+...|++.
T Consensus 98 ~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~----~~~IG~~~AlfYe~wA~~lE~~g~~~ 167 (223)
T 4aez_C 98 TLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLA----HHHIGQESSIFYEEYANYFESRGLFQ 167 (223)
T ss_dssp HHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHH----HTTCSTTBHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHH----HCCcchhHHHHHHHHHHHHHHcCCHH
Confidence 34555555443 334444444444443331 123444554432 22233557788899999999999999
Q ss_pred HHHHHHHHHHHh
Q 028316 195 RAARFYDKYISR 206 (210)
Q Consensus 195 ~A~~~~~~al~~ 206 (210)
+|...|+.+++.
T Consensus 168 ~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 168 KADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999988874
No 315
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=51.34 E-value=93 Score=24.92 Aligned_cols=91 Identities=14% Similarity=0.056 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh----------------HHHHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 028316 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP----------------IEEKK-AARGLGASLQRQGKYREAIKYHSM 162 (210)
Q Consensus 100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~----------------~~~~~-~~~~lg~~~~~~~~~~~A~~~~~~ 162 (210)
...++..+...++|.+|.-.+....++..-..++ ..... .+..+...+.+.+.|+.|+..++.
T Consensus 38 l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l~k~ 117 (436)
T 2yin_A 38 LYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISLCKE 117 (436)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4668888888888888877663322221110100 01111 344455555667778888888888
Q ss_pred HHHHHHHh-CCCcchHHHHHHHHHHHHHc
Q 028316 163 VLQISERE-GEYSGSTEAYGAIADCYTEL 190 (210)
Q Consensus 163 al~~~~~~-~~~~~~~~~~~~lg~~y~~~ 190 (210)
.+...+.. .|....+.++..++.+|...
T Consensus 118 L~~~yE~~~~Dy~~Ls~~~~~~a~~y~~I 146 (436)
T 2yin_A 118 LAEQYEMEIFDYELLSQNLIQQAKFYESI 146 (436)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877764 56666777777777777643
No 316
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=50.49 E-value=67 Score=23.89 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHh-c----CChHHHHHHHHHHHHHHH-HcCCHHHHHH
Q 028316 95 EELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQN-V----KDPIEEKKAARGLGASLQ-RQGKYREAIK 158 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~l~~~-~----~~~~~~~~~~~~lg~~~~-~~~~~~~A~~ 158 (210)
..+.-+...|..|...-. -+.|...|++|.+++.. + -+|....-+++ .+..|+ -+++.++|..
T Consensus 140 skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLN-fSVFyYEIln~p~~Ac~ 218 (268)
T 3efz_A 140 ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILN-YTILKYDLLGNPEGAMK 218 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHH-HHHHHHTTTCCHHHHHH
T ss_pred hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH-HHHHHHHHcCCHHHHHH
Confidence 344445567887765422 46788899999999864 3 12333333443 444444 5899999999
Q ss_pred HHHHHHHH
Q 028316 159 YHSMVLQI 166 (210)
Q Consensus 159 ~~~~al~~ 166 (210)
..++|++.
T Consensus 219 lAk~AFde 226 (268)
T 3efz_A 219 FANRAIQA 226 (268)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999776
No 317
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=50.03 E-value=42 Score=26.88 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 174 SGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.....++..+|++|.-.|++++|..+.+++++.
T Consensus 187 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 187 MNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 446678899999999999999999999999863
No 318
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=49.79 E-value=28 Score=28.07 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 165 (210)
Q Consensus 134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 165 (210)
.....++.-++++|+..++|++|..+.++++.
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 33566888899999999999999999999974
No 319
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=49.73 E-value=37 Score=20.72 Aligned_cols=64 Identities=23% Similarity=0.058 Sum_probs=41.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
-|..+++.|+|=+|-+.++..=..............+....|......|+. |...+.+++....
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~ 70 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLE 70 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHT
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHH
Confidence 456677789998888888877544311000112333445556666677887 9999999988654
No 320
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=49.39 E-value=41 Score=27.02 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 174 SGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.....++..+|++|.-.|++++|..+.+++++.
T Consensus 193 ~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 193 VNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 456778999999999999999999999998863
No 321
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=49.02 E-value=68 Score=22.73 Aligned_cols=85 Identities=8% Similarity=-0.031 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHH
Q 028316 118 TEFKAALELAQN---VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE 194 (210)
Q Consensus 118 ~~~~~al~l~~~---~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 194 (210)
..+++++..+.. .++.+.-...+...+..+ ..+....+.+.|.-...- +-....+..|-..|..+...|+++
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~----~IG~~~AlfYe~wA~~lE~~g~~~ 132 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK----GIGTKLSLFYEEFSKLLENAQFFL 132 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH----TSSTTBHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC----CCcHHHHHHHHHHHHHHHHcCCHH
Confidence 467777766543 444554444555444443 133366777777766332 233557888999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 028316 195 RAARFYDKYISRL 207 (210)
Q Consensus 195 ~A~~~~~~al~~~ 207 (210)
+|...|+.+++.-
T Consensus 133 ~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 133 EAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998743
No 322
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=48.87 E-value=74 Score=23.11 Aligned_cols=52 Identities=13% Similarity=0.027 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHH-h-CCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 028316 154 REAIKYHSMVLQISER-E-GEYSGSTEAYGAIADCYTE-LGDLERAARFYDKYIS 205 (210)
Q Consensus 154 ~~A~~~~~~al~~~~~-~-~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~ 205 (210)
++|...|++|.+++.. . ..+|.......|.+..|++ +++.++|....++|.+
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5788999999999864 2 2334444456666666655 7999998887766665
No 323
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=48.62 E-value=96 Score=24.31 Aligned_cols=115 Identities=9% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHHHHHcCCHHHHH-
Q 028316 95 EELLSRLKTGKNFLRNQD------LEKAFTEFKAALELAQNVKD----------PIEEKKAARGLGASLQRQGKYREAI- 157 (210)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~------~~~A~~~~~~al~l~~~~~~----------~~~~~~~~~~lg~~~~~~~~~~~A~- 157 (210)
..+.+++++|.++.+.+. ...|..+|.+|--++.-+.+ .+....++..+..+..+.=-+.+|+
T Consensus 121 E~a~vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~ 200 (392)
T 1zb1_A 121 EKSCTLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFEYLSENFLNSPSVDLQSENTRFLANICHAEAQELFVLKLLN 200 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred -------------------HHHHHHHHHHHHhCCC------------------cchHHHHHHHHHHHHHcCCHHHHHHHH
Q 028316 158 -------------------KYHSMVLQISEREGEY------------------SGSTEAYGAIADCYTELGDLERAARFY 200 (210)
Q Consensus 158 -------------------~~~~~al~~~~~~~~~------------------~~~~~~~~~lg~~y~~~g~~~~A~~~~ 200 (210)
++|+++.+........ --.+.+++..|....+.+++-+|+.++
T Consensus 201 ~~~~~~k~~liAkLa~~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L 280 (392)
T 1zb1_A 201 DQISSKQYTLISKLSRATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFL 280 (392)
T ss_dssp STTGGGCHHHHHHHHHHHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Q ss_pred HHHHHhhcc
Q 028316 201 DKYISRLES 209 (210)
Q Consensus 201 ~~al~~~~~ 209 (210)
+.|.+.+..
T Consensus 281 ~~A~~~l~~ 289 (392)
T 1zb1_A 281 DFSMQQLIS 289 (392)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 324
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=47.70 E-value=83 Score=23.30 Aligned_cols=72 Identities=15% Similarity=0.084 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHh-cC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028316 96 ELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASLQRQGKYREAIKYHSM 162 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~l~~~-~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 162 (210)
.+.-+...|..|...-. -+.|...|++|.+++.. +. ++....-+++.-...|--+++.++|....++
T Consensus 124 kVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~ 203 (260)
T 1o9d_A 124 KVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQ 203 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44444556777664333 35778899999999974 33 2333344444434444458999999988888
Q ss_pred HHHHH
Q 028316 163 VLQIS 167 (210)
Q Consensus 163 al~~~ 167 (210)
++..+
T Consensus 204 Afd~A 208 (260)
T 1o9d_A 204 AFDEA 208 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87554
No 325
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=46.55 E-value=36 Score=27.64 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028316 134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
.....++.-++.+|+..++|++|..+.++++..
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345567888999999999999999999999864
No 326
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=45.61 E-value=38 Score=22.77 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=28.0
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028316 131 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164 (210)
Q Consensus 131 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 164 (210)
++....+..+..+|.+|.+.|+..+|-+.+.+|-
T Consensus 119 ~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 119 KNNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp --CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 4444457889999999999999999999999983
No 327
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=45.33 E-value=84 Score=22.72 Aligned_cols=72 Identities=8% Similarity=-0.042 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHhc-C--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 96 ELLSRLKTGKNFL-----RNQDLEKAFTEFKAALELAQNV-K--DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 96 ~~~~~~~~g~~~~-----~~~~~~~A~~~~~~al~l~~~~-~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.+.-+-..|..|. ..|+-+.|...|+.|.+++.+. . +|...+-+++.--..|--+++.++|....++++.+.
T Consensus 119 kVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 119 KFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4444555677665 3566889999999999999852 2 222234444444444556999999999999998764
No 328
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=44.60 E-value=38 Score=27.16 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.....++.-++.+|+..++|++|..+.++++...
T Consensus 187 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 220 (454)
T 3myv_A 187 MNKYAARALLARIYLYHDDNRKAFDLADQLIKDA 220 (454)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 3355678889999999999999999999998753
No 329
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.18 E-value=58 Score=20.83 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 028316 112 DLEKAFTEFKAALELAQN 129 (210)
Q Consensus 112 ~~~~A~~~~~~al~l~~~ 129 (210)
.|++|..+..++|++-+.
T Consensus 18 ~h~~AF~~Is~AL~~DE~ 35 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDEL 35 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhc
Confidence 466777777777776553
No 330
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=43.62 E-value=39 Score=27.17 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.....++.-+|++|+..++|++|..+.++++...
T Consensus 193 ~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~~ 226 (461)
T 3kez_A 193 VNRWAAMTLLSRVYLYKGEYNEALTMAENAIKGA 226 (461)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 3456678889999999999999999999998753
No 331
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=43.26 E-value=40 Score=22.96 Aligned_cols=68 Identities=12% Similarity=-0.002 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC--cchHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028316 141 RGLGASLQRQGKYREAIKYHSMVLQISEREGEY--SGSTEAY-GAIADCYTELGDLERAARFYDKYISRLE 208 (210)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~-~~lg~~y~~~g~~~~A~~~~~~al~~~~ 208 (210)
+.-|..+++.|+|=+|-+.++..=.......+. .....+. ...|..+...|+..-|...+.+++..+.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~ 106 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFR 106 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 446677778899999988888774332100000 1123334 4455666778999999999999988664
No 332
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=42.81 E-value=1e+02 Score=22.93 Aligned_cols=54 Identities=17% Similarity=0.090 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhC----CCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 028316 153 YREAIKYHSMVLQISEREG----EYSGSTEAYGAIADCYTE-LGDLERAARFYDKYISR 206 (210)
Q Consensus 153 ~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~ 206 (210)
-++|...|++|.+++.+.- .+|...-...|.+..|++ +++.++|....++|.+-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3678899999999886422 334444456666666664 79999999988888764
No 333
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=42.61 E-value=66 Score=25.93 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 174 SGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.....++..+|++|.-.|++++|..+.+++++.
T Consensus 194 ~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 194 FNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 346678999999999999999999999999864
No 334
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=40.15 E-value=80 Score=20.99 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE 135 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~ 135 (210)
.+...+..|..|...||.+.|--.|.+...+...+..++.
T Consensus 41 sa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kIpkHpd 80 (144)
T 2a9u_A 41 SALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPD 80 (144)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3445677899999999999999999999999876655554
No 335
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=39.60 E-value=1.1e+02 Score=22.58 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 028316 154 REAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTE-LGDLERAARFYDKYIS 205 (210)
Q Consensus 154 ~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~ 205 (210)
+.|...|++|.+++... ..+|...-...|.+..|++ +++.++|....++|.+
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57889999999988542 2234444455666666655 6999888887666654
No 336
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=38.91 E-value=50 Score=26.60 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=29.0
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028316 174 SGSTEAYGAIADCYTELGDLERAARFYDKYISR 206 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 206 (210)
.....++..+|++|.-.|++++|..+.+++++.
T Consensus 199 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 199 INYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 346678999999999999999999999999864
No 337
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=38.52 E-value=1.2e+02 Score=22.46 Aligned_cols=52 Identities=12% Similarity=0.030 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHH-h-CCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 028316 154 REAIKYHSMVLQISER-E-GEYSGSTEAYGAIADCYTE-LGDLERAARFYDKYIS 205 (210)
Q Consensus 154 ~~A~~~~~~al~~~~~-~-~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~ 205 (210)
+.|...|++|.+++.. . ..+|...-...|.+..|++ +++.++|....++|.+
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5788999999999864 2 2334444556666666665 6999998887766654
No 338
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=37.21 E-value=67 Score=21.36 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 028316 96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 128 (210)
Q Consensus 96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~ 128 (210)
.+..++..|.+|...|+.+.|.-.|.++..++-
T Consensus 39 ta~~llr~A~~y~~egd~e~AYily~R~~~L~~ 71 (146)
T 2xze_A 39 SGVEIIRMASIYSEEGNIEHAFILYNKYITLFI 71 (146)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 445667889999999999999999999988884
No 339
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=36.82 E-value=88 Score=21.00 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028316 134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
...+..|-..|..+-..|++++|...|+.+++.
T Consensus 98 ~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 98 TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 335667778888899999999999999999865
No 340
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=36.80 E-value=1.3e+02 Score=22.31 Aligned_cols=52 Identities=10% Similarity=-0.066 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 028316 154 REAIKYHSMVLQISERE-GEYSGSTEAYGAIADCYTE-LGDLERAARFYDKYIS 205 (210)
Q Consensus 154 ~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~ 205 (210)
++|...|++|.+++... ..+|...-...|.+..|++ +++.++|....++|.+
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57889999999998212 2223344455666666655 7999999887777665
No 341
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=36.79 E-value=87 Score=25.54 Aligned_cols=32 Identities=9% Similarity=-0.036 Sum_probs=26.4
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 174 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
.....++..+|++|.-.+++++|..+.+++++
T Consensus 179 ~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 179 ATKGAAYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666788899999999999999999888875
No 342
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=35.89 E-value=1.3e+02 Score=22.10 Aligned_cols=52 Identities=15% Similarity=-0.008 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 028316 154 REAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTE-LGDLERAARFYDKYIS 205 (210)
Q Consensus 154 ~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~ 205 (210)
+.|...|++|.+++... ..+|...-...|.+..|++ +++.++|....++|.+
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67889999999988642 2234444455666666555 7999988887666654
No 343
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=35.48 E-value=71 Score=21.24 Aligned_cols=27 Identities=37% Similarity=0.625 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 179 AYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 179 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
.+...|.+|...|+.+.|.-.|-++..
T Consensus 42 ~llr~A~~y~~egd~e~AYily~R~~~ 68 (146)
T 2xze_A 42 EIIRMASIYSEEGNIEHAFILYNKYIT 68 (146)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445555555555555555555443
No 344
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=34.83 E-value=67 Score=25.87 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028316 135 EEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
....++.-++.+|+..++|++|..+.++++..
T Consensus 195 tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 195 NKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 35567888999999999999999999999865
No 345
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.85 E-value=1e+02 Score=20.98 Aligned_cols=36 Identities=8% Similarity=-0.004 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 132 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 132 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
.-...+..|...|..+-..|++.+|.+.|+.+++..
T Consensus 91 IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 91 IGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp SSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 333456778888889999999999999999998653
No 346
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=33.33 E-value=56 Score=26.41 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 174 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
.....++..+|++|...+++++|..+.++.++
T Consensus 177 ~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 177 PTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34566888899999999999999998887764
No 347
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=33.09 E-value=81 Score=20.70 Aligned_cols=30 Identities=3% Similarity=-0.135 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028316 137 KKAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
+......+......|+|+.|.-..+++++.
T Consensus 16 A~~dl~~A~~~~~~g~y~~a~F~aqQA~Ek 45 (141)
T 3o10_A 16 ARANFSAARNDLHKNANEWVCFKCYLSTKL 45 (141)
T ss_dssp HHHHHHHHGGGTTTTCHHHHHHHHHHHHHH
T ss_pred HHhhhhHHhhHHhhCccceEeeehhHHHHH
Confidence 333334444445555666665555555544
No 348
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=33.04 E-value=1.3e+02 Score=24.70 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=27.4
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 174 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
.....++..+|++|.-.+++++|..+.+++++
T Consensus 195 ~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 195 ACKQAALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34667888899999999999999999998876
No 349
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=32.83 E-value=47 Score=26.75 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028316 134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166 (210)
Q Consensus 134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 166 (210)
.....++.-++++|+..++|++|..+.++++..
T Consensus 199 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 199 INYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 345567888999999999999999999999864
No 350
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=31.79 E-value=75 Score=25.91 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 165 (210)
Q Consensus 134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 165 (210)
.....++.-++.+|+..+++++|....++++.
T Consensus 179 ~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 179 ATKGAAYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556788899999999999999999999975
No 351
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=31.55 E-value=96 Score=19.36 Aligned_cols=28 Identities=7% Similarity=0.026 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028316 136 EKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
.+++...-+.-..+.|+|++|...++++
T Consensus 19 ~ArS~~~eAl~~Ak~g~fe~A~~~l~eA 46 (105)
T 2e2a_A 19 DARSKLLEALKAAENGDFAKADSLVVEA 46 (105)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444444455555666666666666665
No 352
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=31.53 E-value=78 Score=26.68 Aligned_cols=93 Identities=15% Similarity=0.004 Sum_probs=61.2
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHhCCCc----
Q 028316 107 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ--------ISEREGEYS---- 174 (210)
Q Consensus 107 ~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~---- 174 (210)
....++++.|..++.+.-. .........+.+|.++...|+.++|..+|+++.. ...+++...
T Consensus 295 Alr~~d~~~a~~~~~~l~~------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~ 368 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPM------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKI 368 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCT------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCC
T ss_pred HHHCCCHHHHHHHHHHccc------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCC
Confidence 3456999999888865332 2223567789999999999999999999998753 112222110
Q ss_pred --------c--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 175 --------G--STEAYGAIADCYTELGDLERAARFYDKYIS 205 (210)
Q Consensus 175 --------~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 205 (210)
. ....-...+..+...|....|...+.....
T Consensus 369 ~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 369 DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 0 111234556677788888888877766543
No 353
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.06 E-value=1.1e+02 Score=21.99 Aligned_cols=35 Identities=9% Similarity=0.031 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 133 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 133 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
-...+..|-..|..+-..|++.+|...|+.+++-.
T Consensus 146 G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 146 GQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 33356677888888999999999999999998754
No 354
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=30.59 E-value=99 Score=19.22 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028316 137 KKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
+++...-+.-..+.|+|++|...++++
T Consensus 18 Ars~~~eAl~~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 18 ARSLAYAALKQAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444444455566666666665555
No 355
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=30.26 E-value=90 Score=25.57 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 165 (210)
Q Consensus 134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 165 (210)
.....++.-++.+|+..+++++|.+.+++++.
T Consensus 195 ~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 195 ACKQAALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33556788899999999999999999999986
No 356
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=28.80 E-value=1e+02 Score=18.73 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH-HHHHHHHH
Q 028316 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY-GAIADCYT 188 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~lg~~y~ 188 (210)
.+++...-|.-++..++|.+|+..|+++.... +.+..-.++ +.++.|-.
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t----en~~i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNLS----DNEEIKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHccc----cCHHHHHHHHHHHHHHHH
Confidence 34455556677889999999999999996543 223333333 56666643
No 357
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=28.53 E-value=57 Score=19.60 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028316 136 EKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
.+..|..=|..|+..||+..|+.++.-+
T Consensus 34 mA~~Y~~Da~~fl~kGD~v~Ala~isYa 61 (86)
T 2oo2_A 34 NIEAYISDSRYFLEKGDLVRAFECVVWA 61 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556666677777777777777766554
No 358
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=28.14 E-value=50 Score=26.71 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028316 135 EEKKAARGLGASLQRQGKYREAIKYHSMVLQ 165 (210)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 165 (210)
....++.-++.+|+..++|++|..+.++++.
T Consensus 178 tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 178 TQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3455778899999999999999999998863
No 359
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=27.54 E-value=1.6e+02 Score=20.77 Aligned_cols=70 Identities=10% Similarity=0.018 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028316 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 167 (210)
+..-...+...+..+ ..+....+...|.-... ..+| ...+..|-..|..+-..|++.+|...|+.+++-.
T Consensus 76 D~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~--~~IG--~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 76 DPRFLKIWIWYINLF-LSNNFHESENTFKYMFN--KGIG--TKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHH--HTSS--TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhh-cccccCCHHHHHHHHHH--CCCc--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 334455566666654 23335566666654433 2222 3356678888999999999999999999998643
No 360
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=27.48 E-value=51 Score=16.04 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHH
Q 028316 153 YREAIKYHSMVLQI 166 (210)
Q Consensus 153 ~~~A~~~~~~al~~ 166 (210)
|++|+..|+.+++.
T Consensus 18 yDKAVaSfk~alk~ 31 (37)
T 3s6n_M 18 YDKAVASFKHALKN 31 (37)
T ss_pred HHHHHHHHHHHHhc
Confidence 66777777766543
No 361
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=27.08 E-value=1.8e+02 Score=21.11 Aligned_cols=53 Identities=13% Similarity=-0.037 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 028316 153 YREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTE-LGDLERAARFYDKYIS 205 (210)
Q Consensus 153 ~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~ 205 (210)
-+.|...|++|.+++... ..+|...-...|.+..|++ +++.++|....++|.+
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357889999999988642 2334444455666666554 6999988887666654
No 362
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=26.81 E-value=67 Score=26.27 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHHHcCC
Q 028316 155 EAIKYHSMVLQISEREG--EYSGSTEAYGAIADCYTELGD 192 (210)
Q Consensus 155 ~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~ 192 (210)
+|+++|++|++..++.. +.......+.+++..|...|+
T Consensus 450 kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD 489 (526)
T 2wb7_A 450 GAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD 489 (526)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH
Confidence 45555555555554433 222233344444444444333
No 363
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=26.00 E-value=1.3e+02 Score=18.96 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028316 136 EKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
.+++...-+.-..+.|+|++|...++++
T Consensus 21 ~Ars~~~eAl~~Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 21 NARSFAMEALQFAKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444455555666666666666666
No 364
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=25.21 E-value=1.4e+02 Score=19.16 Aligned_cols=29 Identities=10% Similarity=-0.030 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028316 135 EEKKAARGLGASLQRQGKYREAIKYHSMV 163 (210)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 163 (210)
..+++...-+.-..+.|+|++|...++++
T Consensus 35 G~ARS~~~eAl~~Ak~gdfe~A~~~l~eA 63 (120)
T 3l8r_A 35 GNARSIVHEAFDAMREKNYILAEQKLQEA 63 (120)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444555555666666666666666
No 365
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3
Probab=25.13 E-value=1.6e+02 Score=23.12 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHH
Q 028316 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE 136 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~ 136 (210)
...++.-++++|..+++.|++++|..++-.|.-+...+..+...
T Consensus 94 A~~~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy~~D~~~P~Ha 137 (370)
T 1olp_A 94 AESQTRKFATLAKNEWDKGNYEKAAWYLGQGMHYFGDLNTPYHA 137 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCccc
Confidence 35566778999999999999999999999999998887766654
No 366
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A
Probab=24.19 E-value=1.5e+02 Score=23.23 Aligned_cols=43 Identities=7% Similarity=0.081 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH
Q 028316 93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE 135 (210)
Q Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~ 135 (210)
...++.-++++|..+++.|++++|..++-.|.-+...+..+..
T Consensus 94 A~~~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy~~D~~~P~H 136 (370)
T 2wxu_A 94 GESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPYH 136 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCcc
Confidence 3556677899999999999999999999999998887655544
No 367
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=22.89 E-value=18 Score=26.82 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028316 92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 129 (210)
Q Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~ 129 (210)
|....+......|.-.-..|+|++|+..|..++++.-.
T Consensus 18 p~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~ 55 (257)
T 2ymb_A 18 PQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ 55 (257)
T ss_dssp --------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 33445556677788888889999999999999887654
No 368
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=22.61 E-value=1.7e+02 Score=19.34 Aligned_cols=40 Identities=3% Similarity=-0.167 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028316 136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 175 (210)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 175 (210)
.+..+...|..|...||.+.|--.|.+.+.+...+..++.
T Consensus 41 sa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kIpkHpd 80 (144)
T 2a9u_A 41 SALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPD 80 (144)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3445566788899999999999999988887766655543
Done!