Query 028317
Match_columns 210
No_of_seqs 110 out of 730
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 15:47:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kil_E Complexin I snare-compl 77.0 1.1 3.6E-05 29.1 1.6 12 126-137 38-49 (49)
2 3rk3_E Complexin-1; snare prot 73.8 1.5 5E-05 29.7 1.7 14 126-139 41-54 (63)
3 1l4a_E Synaphin A; snare, snar 70.7 1.8 6.3E-05 30.5 1.7 15 126-140 45-59 (79)
4 1x62_A C-terminal LIM domain p 28.0 45 0.0015 22.2 2.9 35 10-44 11-45 (79)
5 1dxg_A Desulforedoxin; non-hem 21.0 36 0.0012 20.0 1.1 15 12-26 4-18 (36)
6 3zwz_B RON2, rhoptry NECK prot 14.1 54 0.0019 19.9 0.7 25 157-184 3-27 (39)
7 2i5o_A DNA polymerase ETA; zin 12.7 44 0.0015 20.3 0.0 20 4-26 2-21 (39)
8 4egd_A Uncharacterized protein 12.0 82 0.0028 26.8 1.5 15 127-141 193-207 (260)
9 2lo3_A SAGA-associated factor 11.9 1.2E+02 0.0042 18.9 1.9 18 10-27 13-30 (44)
10 2epu_A Zinc finger protein 32; 8.9 1.7E+02 0.0058 16.1 1.8 7 15-21 13-19 (45)
No 1
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=76.96 E-value=1.1 Score=29.08 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=10.8
Q ss_pred HHHHHHHHHcCC
Q 028317 126 NLRQNLQKKYHL 137 (210)
Q Consensus 126 ~~R~~IR~kygI 137 (210)
.+|+.||.||||
T Consensus 38 ~mRq~IRdKY~i 49 (49)
T 1kil_E 38 VMRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhcCC
Confidence 479999999998
No 2
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=73.79 E-value=1.5 Score=29.71 Aligned_cols=14 Identities=36% Similarity=0.726 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCCC
Q 028317 126 NLRQNLQKKYHLKN 139 (210)
Q Consensus 126 ~~R~~IR~kygI~G 139 (210)
.+|+.||.||||+-
T Consensus 41 ~mRQ~IRdKY~ikK 54 (63)
T 3rk3_E 41 AVRQGIRDKYGIKK 54 (63)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhccch
Confidence 47999999999984
No 3
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=70.71 E-value=1.8 Score=30.48 Aligned_cols=15 Identities=40% Similarity=0.758 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCCCCC
Q 028317 126 NLRQNLQKKYHLKNS 140 (210)
Q Consensus 126 ~~R~~IR~kygI~Gs 140 (210)
.+|+.||.||||+--
T Consensus 45 ~mRq~IRdKY~ikKK 59 (79)
T 1l4a_E 45 EMRQTIRDKYGLKKK 59 (79)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHhccccc
Confidence 479999999999844
No 4
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.03 E-value=45 Score=22.17 Aligned_cols=35 Identities=20% Similarity=0.446 Sum_probs=23.8
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCCCCcCccccc
Q 028317 10 SPLRFLRCNECGQPLPEDFEPPADEPWTTGIFGCT 44 (210)
Q Consensus 10 ~~~~~~~~~~~~q~~p~~~~p~~~~~W~~GLcdC~ 44 (210)
..-..-+|..|+++.-..+--...+.|+..-|-|.
T Consensus 11 ~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~ 45 (79)
T 1x62_A 11 NAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCT 45 (79)
T ss_dssp CCCCCCCCSSSCCCCCSSCEECSSCEECTTTTSCS
T ss_pred CCCCCCccccCCCCccCcEEEECcceeCcCcCeeC
Confidence 33455689999998765544345678998877763
No 5
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=21.01 E-value=36 Score=20.02 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=11.9
Q ss_pred cceeeccCCCCCCCC
Q 028317 12 LRFLRCNECGQPLPE 26 (210)
Q Consensus 12 ~~~~~~~~~~q~~p~ 26 (210)
+.|++|++||+..-.
T Consensus 4 ~~fY~C~~CGnivev 18 (36)
T 1dxg_A 4 GDVYKCELCGQVVKV 18 (36)
T ss_dssp TCEEECTTTCCEEEE
T ss_pred ccEEEcCCCCcEEEE
Confidence 578999999987554
No 6
>3zwz_B RON2, rhoptry NECK protein 2; immune system, malaria, moving junction; 2.10A {Plasmodium falciparum}
Probab=14.13 E-value=54 Score=19.90 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhcCCCCCCccccCCCCcc
Q 028317 157 CQEHREMKNRLSDNVAMPMTVVNPPPVQ 184 (210)
Q Consensus 157 ~Qe~RElk~r~~~p~~~~~~~~~~p~~q 184 (210)
.|++.+| +..|..-.++...|||+|
T Consensus 3 tQhA~Di---G~GPv~SC~ts~i~PPk~ 27 (39)
T 3zwz_B 3 TQQAKDI---GAGPVASCFTTRMSPPQQ 27 (39)
T ss_dssp CHHHHHT---TCCCCCSEEEESSSSCCE
T ss_pred hhhhhhc---cCCchhhhhhccCCcHHH
Confidence 3555444 666666556666677765
No 7
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=12.71 E-value=44 Score=20.33 Aligned_cols=20 Identities=25% Similarity=0.718 Sum_probs=11.6
Q ss_pred CCcccCCccceeeccCCCCCCCC
Q 028317 4 SPVSSTSPLRFLRCNECGQPLPE 26 (210)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~q~~p~ 26 (210)
+++|+.+.. +|.+||+..|.
T Consensus 2 ~~~~~~~~~---~C~~C~~~i~~ 21 (39)
T 2i5o_A 2 SHMAAEDQV---PCEKCGSLVPV 21 (39)
T ss_dssp ----CCCEE---ECTTTCCEEEG
T ss_pred CCCCcCCCc---ccccccCcCCc
Confidence 345555544 89999987664
No 8
>4egd_A Uncharacterized protein saouhsc_02783; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Staphylococcus aureus subsp} PDB: 4eg9_A
Probab=12.04 E-value=82 Score=26.75 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCCCCC
Q 028317 127 LRQNLQKKYHLKNSP 141 (210)
Q Consensus 127 ~R~~IR~kygI~Gs~ 141 (210)
--.++|+||+|+-+.
T Consensus 193 NVKQLRkrY~IpT~k 207 (260)
T 4egd_A 193 NVQQLRKRYDIPTKQ 207 (260)
T ss_dssp HHHHHHHHSCCCCCC
T ss_pred hHHHHHHhcCCCCCC
Confidence 456999999999664
No 9
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=11.93 E-value=1.2e+02 Score=18.93 Aligned_cols=18 Identities=33% Similarity=1.021 Sum_probs=14.3
Q ss_pred CccceeeccCCCCCCCCC
Q 028317 10 SPLRFLRCNECGQPLPED 27 (210)
Q Consensus 10 ~~~~~~~~~~~~q~~p~~ 27 (210)
+++++-.|+-||+|...+
T Consensus 13 ~~~~YRvC~~CgkPi~ls 30 (44)
T 2lo3_A 13 KPIQYRVCEKCGKPLALT 30 (44)
T ss_dssp CCCCEEECTTTCCEEETT
T ss_pred ccccchhhcccCCcchHH
Confidence 678888999999886543
No 10
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=8.90 E-value=1.7e+02 Score=16.08 Aligned_cols=7 Identities=43% Similarity=1.564 Sum_probs=3.2
Q ss_pred eeccCCC
Q 028317 15 LRCNECG 21 (210)
Q Consensus 15 ~~~~~~~ 21 (210)
++|++|+
T Consensus 13 ~~C~~C~ 19 (45)
T 2epu_A 13 FECTHCG 19 (45)
T ss_dssp EEETTTT
T ss_pred ccCCCCC
Confidence 4444444
Done!