Query 028317
Match_columns 210
No_of_seqs 110 out of 730
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 15:47:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028317.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028317hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wjva1 g.37.1.2 (A:1-35) Cell 27.2 15 0.0011 20.5 1.7 14 10-23 6-19 (35)
2 d1dfxa2 g.41.5.2 (A:1-36) Desu 23.6 12 0.00085 21.3 0.8 18 12-29 4-21 (36)
3 d1vzia2 g.41.5.2 (A:1-37) Desu 22.6 13 0.00092 21.3 0.8 17 12-28 4-20 (37)
4 d2ctda2 g.37.1.1 (A:61-90) Zin 21.4 17 0.0012 19.5 1.1 12 14-25 2-13 (30)
5 d1x6ea2 g.37.1.1 (A:41-66) Zin 19.4 18 0.0013 18.9 1.0 9 15-23 3-11 (26)
6 d1dxga_ g.41.5.2 (A:) Desulfor 13.4 27 0.002 19.6 0.7 16 12-27 4-19 (36)
7 d1mkya3 d.52.5.1 (A:359-439) P 10.5 76 0.0056 20.3 2.4 20 123-142 53-73 (81)
8 d1neea2 g.59.1.1 (A:99-135) Zi 9.2 77 0.0056 17.7 1.7 17 11-27 19-35 (37)
9 d2odgc1 a.140.1.1 (C:2-47) Inn 7.3 1.1E+02 0.0078 17.9 1.8 15 131-145 14-28 (46)
10 d1tjla2 g.39.1.13 (A:111-151) 7.1 75 0.0054 17.8 1.0 16 152-167 23-38 (41)
No 1
>d1wjva1 g.37.1.2 (A:1-35) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.19 E-value=15 Score=20.54 Aligned_cols=14 Identities=43% Similarity=1.087 Sum_probs=11.3
Q ss_pred CccceeeccCCCCC
Q 028317 10 SPLRFLRCNECGQP 23 (210)
Q Consensus 10 ~~~~~~~~~~~~q~ 23 (210)
+-.-||+||-||+.
T Consensus 6 s~MVfFtCn~CGEs 19 (35)
T d1wjva1 6 SGMVFFTCNACGES 19 (35)
T ss_dssp CCCCEEEESSSCCE
T ss_pred ceEEEEEcchhHHH
Confidence 44679999999974
No 2
>d1dfxa2 g.41.5.2 (A:1-36) Desulfoferrodoxin N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=23.64 E-value=12 Score=21.31 Aligned_cols=18 Identities=22% Similarity=0.562 Sum_probs=14.2
Q ss_pred cceeeccCCCCCCCCCCC
Q 028317 12 LRFLRCNECGQPLPEDFE 29 (210)
Q Consensus 12 ~~~~~~~~~~q~~p~~~~ 29 (210)
+.++||+.||++-..-..
T Consensus 4 ~evYkC~~CGNiVeV~~~ 21 (36)
T d1dfxa2 4 LEVYKCTHCGNIVEVLHG 21 (36)
T ss_dssp TCEEECTTTCCEEECSSC
T ss_pred ccEEEecccCcEEEEEEC
Confidence 578999999998766543
No 3
>d1vzia2 g.41.5.2 (A:1-37) Desulfoferrodoxin N-terminal domain {Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]}
Probab=22.57 E-value=13 Score=21.29 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=12.9
Q ss_pred cceeeccCCCCCCCCCC
Q 028317 12 LRFLRCNECGQPLPEDF 28 (210)
Q Consensus 12 ~~~~~~~~~~q~~p~~~ 28 (210)
+.++||+.||++-..-.
T Consensus 4 ~evYkC~~CGNiVeV~~ 20 (37)
T d1vzia2 4 LQVYKCEVCGNIVEVLN 20 (37)
T ss_dssp TCEEECTTTCCEEEEEE
T ss_pred ccEEEecccCcEEEEEE
Confidence 57899999998765443
No 4
>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.39 E-value=17 Score=19.49 Aligned_cols=12 Identities=33% Similarity=1.082 Sum_probs=9.0
Q ss_pred eeeccCCCCCCC
Q 028317 14 FLRCNECGQPLP 25 (210)
Q Consensus 14 ~~~~~~~~q~~p 25 (210)
.|+|++||.+.-
T Consensus 2 ~ftc~hcgkqlk 13 (30)
T d2ctda2 2 MFTCHHCGKQLR 13 (30)
T ss_dssp CCCCSSSCCCCS
T ss_pred ceechhHHHHHh
Confidence 478999987653
No 5
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.44 E-value=18 Score=18.87 Aligned_cols=9 Identities=44% Similarity=1.283 Sum_probs=6.4
Q ss_pred eeccCCCCC
Q 028317 15 LRCNECGQP 23 (210)
Q Consensus 15 ~~~~~~~q~ 23 (210)
++|+|||..
T Consensus 3 y~C~eCgK~ 11 (26)
T d1x6ea2 3 YKCLECGKA 11 (26)
T ss_dssp EECSSSCCE
T ss_pred ccCCCCcCe
Confidence 578888764
No 6
>d1dxga_ g.41.5.2 (A:) Desulforedoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=13.40 E-value=27 Score=19.65 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=11.9
Q ss_pred cceeeccCCCCCCCCC
Q 028317 12 LRFLRCNECGQPLPED 27 (210)
Q Consensus 12 ~~~~~~~~~~q~~p~~ 27 (210)
..++||+.||++-..-
T Consensus 4 ~evYkC~~CGNiVeV~ 19 (36)
T d1dxga_ 4 GDVYKCELCGQVVKVL 19 (36)
T ss_dssp TCEEECTTTCCEEEEE
T ss_pred ccEEEeccCCcEEEEE
Confidence 4688999999875444
No 7
>d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=10.46 E-value=76 Score=20.30 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=16.2
Q ss_pred chhHHHHHHHHH-cCCCCCCC
Q 028317 123 YTGNLRQNLQKK-YHLKNSPC 142 (210)
Q Consensus 123 ~~~~~R~~IR~k-ygI~Gs~~ 142 (210)
|.=.+..++|++ ||+.|.+.
T Consensus 53 Y~ryL~n~lR~~~f~~~G~Pi 73 (81)
T d1mkya3 53 QKIFLRKLIRDYVFPFEGSPI 73 (81)
T ss_dssp HHHHHHHHHHHHTCCCTTCCC
T ss_pred HHHHHHHHHHHHhCCCCccCE
Confidence 344678999998 99999875
No 8
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=9.24 E-value=77 Score=17.67 Aligned_cols=17 Identities=29% Similarity=0.866 Sum_probs=13.6
Q ss_pred ccceeeccCCCCCCCCC
Q 028317 11 PLRFLRCNECGQPLPED 27 (210)
Q Consensus 11 ~~~~~~~~~~~q~~p~~ 27 (210)
-+.|++|+-||-..|..
T Consensus 19 R~~~l~C~aCGa~r~V~ 35 (37)
T d1neea2 19 RISLLKCEACGAKAPLK 35 (37)
T ss_dssp TTTEEECSTTSCCCCSC
T ss_pred CEEEEEeccCCCCcccc
Confidence 46789999999887754
No 9
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.30 E-value=1.1e+02 Score=17.88 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=10.9
Q ss_pred HHHHcCCCCCCCccc
Q 028317 131 LQKKYHLKNSPCEPC 145 (210)
Q Consensus 131 IR~kygI~Gs~~~Dc 145 (210)
+-++|||+..+.-|-
T Consensus 14 lL~~y~I~HGPvVds 28 (46)
T d2odgc1 14 LLRRYNIPHGPVVGS 28 (46)
T ss_dssp HHHHTTCCCCCCCHH
T ss_pred HHHHhCCCCCCcccc
Confidence 344899998887653
No 10
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc finger domain {Escherichia coli [TaxId: 562]}
Probab=7.08 E-value=75 Score=17.79 Aligned_cols=16 Identities=19% Similarity=0.576 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHhhh
Q 028317 152 HWCALCQEHREMKNRL 167 (210)
Q Consensus 152 ~~CaL~Qe~RElk~r~ 167 (210)
.-|+-||+..|-+.+.
T Consensus 23 ~~Cv~Cq~~~E~~~r~ 38 (41)
T d1tjla2 23 DLCIDCKTLAEIREKQ 38 (41)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHh
Confidence 3577788888876654
Done!