BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028319
         (210 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1P9O|A Chain A, Crystal Structure Of Phosphopantothenoylcysteine
           Synthetase
 pdb|1P9O|B Chain B, Crystal Structure Of Phosphopantothenoylcysteine
           Synthetase
          Length = 313

 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 115/182 (63%), Gaps = 3/182 (1%)

Query: 30  SLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWK 89
           +LRS Q +A A G  L + FTT+ +YL +LQ  A +   LGP +MFYLAAAVSDFYVP  
Sbjct: 133 ALRSYQ-EAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVS 191

Query: 90  SMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKK 149
            M EHKI+S  GPL + +  VPK+LS L K+WAP AF ISFKLETD  I++ +A  A + 
Sbjct: 192 EMPEHKIESSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEI 251

Query: 150 YGMHAVVANELLSRKEQVVVVTNNG--KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKD 207
           Y    VVAN L SR+  V++VT +   K+ +  ++     ++E+ +   L  RH+ +I D
Sbjct: 252 YQHQVVVANILESRQSFVLIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGD 311

Query: 208 SN 209
            N
Sbjct: 312 RN 313


>pdb|2GK4|A Chain A, The Crystal Structure Of The Dna/pantothenate Metabolism
           Flavoprotein From Streptococcus Pneumoniae
 pdb|2GK4|B Chain B, The Crystal Structure Of The Dna/pantothenate Metabolism
           Flavoprotein From Streptococcus Pneumoniae
          Length = 232

 Score = 30.4 bits (67), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 107 LLQVPKMLSVLRKEWAPMAFCISFKLETD-AEILLEKADMARK---KYGMHAVVANEL 160
           L + PK++S++ KEW P    I FKL  D  E  L   D+ARK   K     ++AN+L
Sbjct: 138 LKKTPKIISLV-KEWNPTIHLIGFKLLVDVTEDHL--VDIARKSLIKNQADLIIANDL 192


>pdb|2PW9|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase
           Accessory Protein From Desulfotalea Psychrophila
 pdb|2PW9|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase
           Accessory Protein From Desulfotalea Psychrophila
 pdb|2PW9|C Chain C, Crystal Structure Of A Putative Formate Dehydrogenase
           Accessory Protein From Desulfotalea Psychrophila
 pdb|2PW9|D Chain D, Crystal Structure Of A Putative Formate Dehydrogenase
           Accessory Protein From Desulfotalea Psychrophila
          Length = 268

 Score = 28.9 bits (63), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 21/109 (19%)

Query: 96  IQSGSGPLDMQLLQVPKMLSVLRKEWAPMA-FCISF-KLETDAEILLEKADMARKKYGMH 153
           I SG G       ++PK +  L  E+AP+A +C+ F ++++     L  + +  + + +H
Sbjct: 103 ITSGCGGTG----KIPKEM--LEGEFAPLADYCLPFAEIKSFIREALHSSPLGPQTHCVH 156

Query: 154 AVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHS 202
                           + NNG++ VY +     + V+K L  +L+ R S
Sbjct: 157 GCG-------------LWNNGRLQVYHEDVGRHNAVDKVLGSILLGRAS 192


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.133    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,187,180
Number of Sequences: 62578
Number of extensions: 175900
Number of successful extensions: 456
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 5
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)