BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028319
(210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GXR5|PPCS1_ARATH Phosphopantothenate--cysteine ligase 1 OS=Arabidopsis thaliana
GN=PPCS1 PE=2 SV=1
Length = 317
Score = 234 bits (598), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 122/176 (69%), Positives = 145/176 (82%)
Query: 35 QFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEH 94
Q AVA G LLKLPF+TI+EYLQML++IA + +GPCSMFYLAAAVSDFYVPW SM EH
Sbjct: 142 QQAAVAEGRLLKLPFSTIYEYLQMLRLIATILKDVGPCSMFYLAAAVSDFYVPWLSMTEH 201
Query: 95 KIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHA 154
KI+SGSGPLD++L QVPKMLS+LR WAP AFCISFKLETD++ILLEKA A +KY +HA
Sbjct: 202 KIESGSGPLDIRLAQVPKMLSILRSNWAPKAFCISFKLETDSKILLEKATKALQKYKVHA 261
Query: 155 VVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT 210
VVANELL+RKE+VVVV+++G + V RD +S VE L +LLVDRHS YIK+S T
Sbjct: 262 VVANELLTRKEEVVVVSSSGNVVVRRDSNKPESIVEDNLIRLLVDRHSTYIKESLT 317
>sp|Q9LZM3|PPCS2_ARATH Phosphopantothenate--cysteine ligase 2 OS=Arabidopsis thaliana
GN=PPCS2 PE=2 SV=2
Length = 309
Score = 232 bits (591), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/176 (67%), Positives = 146/176 (82%)
Query: 35 QFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEH 94
Q AVA G LLKLPF+TI+EYLQML++IA + + +GPCSMFYLAAAVSDFYVPWKSM EH
Sbjct: 134 QQTAVAEGSLLKLPFSTIYEYLQMLRLIAEALKDVGPCSMFYLAAAVSDFYVPWKSMTEH 193
Query: 95 KIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHA 154
KI+SGSGPLD++L QVPKMLSVLR WAP AFCISFKLETD++IL+EKA A +KY +HA
Sbjct: 194 KIESGSGPLDIRLAQVPKMLSVLRSNWAPKAFCISFKLETDSKILMEKATKALRKYKVHA 253
Query: 155 VVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT 210
VVANEL +RKE+VVVV+++G + V R+ +S VE L +L+VDRHS YIK+S+
Sbjct: 254 VVANELSTRKEEVVVVSSSGNVVVRRECDKPESFVEDNLIRLIVDRHSTYIKESHN 309
>sp|Q9HAB8|PPCS_HUMAN Phosphopantothenate--cysteine ligase OS=Homo sapiens GN=PPCS PE=1
SV=2
Length = 311
Score = 154 bits (390), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 114/182 (62%), Gaps = 3/182 (1%)
Query: 30 SLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWK 89
+LRS Q +A A G L + FTT+ +YL +LQ A + LGP +MFYLAAAVSDFYVP
Sbjct: 131 ALRSYQ-EAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVS 189
Query: 90 SMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKK 149
M EHKIQS GPL + + VPK+LS L K+WAP AF ISFKLETD I++ +A A +
Sbjct: 190 EMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEI 249
Query: 150 YGMHAVVANELLSRKEQVVVVTNNG--KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKD 207
Y VVAN L SR+ V +VT + K+ + ++ ++E+ + L RH+ +I D
Sbjct: 250 YQHQVVVANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGD 309
Query: 208 SN 209
N
Sbjct: 310 RN 311
>sp|Q8VDG5|PPCS_MOUSE Phosphopantothenate--cysteine ligase OS=Mus musculus GN=Ppcs PE=2
SV=1
Length = 311
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 111/182 (60%), Gaps = 3/182 (1%)
Query: 30 SLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWK 89
+L+S Q +A A G L + FTT+ +YL +LQ A++ LG +MFYLAAAVSDFY+P
Sbjct: 131 ALQSYQ-EAAAAGTFLAVEFTTLADYLHLLQAAALALSPLGSSAMFYLAAAVSDFYIPVS 189
Query: 90 SMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKK 149
M EHKI S GPL + + VPKMLS L K+WAP AF +SFKLETD +I++ +A A +
Sbjct: 190 EMPEHKIHSSGGPLQITMKMVPKMLSPLVKDWAPKAFVVSFKLETDPDIIISRARNALEV 249
Query: 150 YGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSD--VEKPLTKLLVDRHSVYIKD 207
Y VVAN L S K V++VT + + + + +E+ + L RH+ +I D
Sbjct: 250 YQHQVVVANILESIKSFVIIVTKDSETELLLSEEEVAKGLVIEEKIVDDLRSRHTAFICD 309
Query: 208 SN 209
N
Sbjct: 310 KN 311
>sp|Q9USK7|YJ2I_SCHPO Uncharacterized protein C4B3.18 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC4B3.18 PE=3 SV=1
Length = 316
Score = 120 bits (300), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 89/131 (67%), Gaps = 2/131 (1%)
Query: 44 LLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGP- 102
L+ +P+TT+ EYL L+ IA + + ++FYLAAAVSDF++P K ++EHKIQSGSG
Sbjct: 144 LIMIPYTTLTEYLWYLKAIAERLQIIASRALFYLAAAVSDFHIPPKELSEHKIQSGSGSN 203
Query: 103 -LDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL 161
L++++ VPK L L WAP A ISFKLETD IL++KA +A ++Y V+AN L
Sbjct: 204 KLEVKMHPVPKFLRFLVDTWAPEASIISFKLETDPSILIDKARVALQRYNHQLVIANLLS 263
Query: 162 SRKEQVVVVTN 172
+RK V VT+
Sbjct: 264 TRKRSVAFVTS 274
>sp|P40506|PPCS_YEAST Phosphopantothenate--cysteine ligase CAB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CAB2 PE=1
SV=2
Length = 365
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 95/186 (51%), Gaps = 21/186 (11%)
Query: 44 LLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGS--- 100
LL LPFTT+ +YL L+ IA + G C +FYLAAAVSDF+VP+ + +HKIQSG
Sbjct: 177 LLLLPFTTVNQYLWSLKSIAKLLNNSG-C-LFYLAAAVSDFFVPYSRLPQHKIQSGDNGK 234
Query: 101 ----------------GPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKAD 144
G L + L VPK L L + WA A +SFKLETD +LL K
Sbjct: 235 MGANNDTEGTTRTTPDGKLIVNLDPVPKFLRRLVESWATQAMIVSFKLETDESMLLYKCT 294
Query: 145 MARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVY 204
A +Y V+ N L +R +QV+ V+ + + +E+ + ++ RH +
Sbjct: 295 QALDRYNHQLVIGNLLQTRNKQVIFVSPENRKGDWVRLDEKHHSIEEMIIPEVIARHDKW 354
Query: 205 IKDSNT 210
+ S T
Sbjct: 355 VAHSKT 360
>sp|Q58323|COABC_METJA Coenzyme A biosynthesis bifunctional protein CoaBC
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=coaBC
PE=3 SV=1
Length = 403
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 78 AAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLET--D 135
+AA+SDF V E K+ S L ++L + PK+L LR+ + I FK E D
Sbjct: 280 SAAISDFTVES---FEGKLSSEE-ELILKLKRNPKVLEELRRIYKDKVI-IGFKAEYNLD 334
Query: 136 AEILLEKADMARKKYGMHAVVANEL 160
+ L+ +A KY ++ ++AN+L
Sbjct: 335 EKELINRAKERLNKYNLNMIIANDL 359
>sp|P53088|CTU1_YEAST Cytoplasmic tRNA 2-thiolation protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NCS6 PE=1 SV=3
Length = 359
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 31/100 (31%)
Query: 107 LLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQ 166
L++ PK LS L K+ FC+ F+ E + +VAN L R E+
Sbjct: 31 LIRRPKNLSKLCKQ----CFCLVFETEI-----------------HNTIVANNLFQRGEK 69
Query: 167 VVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIK 206
V V + GK DS V + KLL DR+ I+
Sbjct: 70 VAVGASGGK----------DSTVLAHMLKLLNDRYDYGIE 99
>sp|A6ZTX8|CTU1_YEAS7 Cytoplasmic tRNA 2-thiolation protein 1 OS=Saccharomyces cerevisiae
(strain YJM789) GN=NCS6 PE=3 SV=1
Length = 359
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 31/100 (31%)
Query: 107 LLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQ 166
L++ PK LS L K+ FC+ F+ E + +VAN L R E+
Sbjct: 31 LIRRPKNLSKLCKQ----CFCLVFETEI-----------------HNTIVANNLFQRGEK 69
Query: 167 VVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIK 206
V V + GK DS V + KLL DR+ I+
Sbjct: 70 VAVGASGGK----------DSTVLAHMLKLLNDRYDYGIE 99
>sp|B3LHQ7|CTU1_YEAS1 Cytoplasmic tRNA 2-thiolation protein 1 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=NCS6 PE=3 SV=1
Length = 359
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 31/100 (31%)
Query: 107 LLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQ 166
L++ PK LS L K+ FC+ F+ E + +VAN L R E+
Sbjct: 31 LIRRPKNLSKLCKQ----CFCLVFETEI-----------------HNTIVANNLFQRGEK 69
Query: 167 VVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIK 206
V V + GK DS V + KLL DR+ I+
Sbjct: 70 VAVGASGGK----------DSTVLAHMLKLLNDRYDYGIE 99
>sp|Q54LF0|SIR2B_DICDI NAD-dependent deacetylase sir2B OS=Dictyostelium discoideum
GN=sir2B PE=2 SV=1
Length = 778
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 22/143 (15%)
Query: 56 LQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQV----- 110
+ +L+ I S S FYL A+ + Y P K++ E + + P + L +
Sbjct: 2 INILKDILYKSYSYLAFPFFYLGWAIKNSYQPNKTIKEEESKPPKYPKEWSDLFIHSYNN 61
Query: 111 --PKMLSVLRKE-----------WAPMAFCISFKLETDAEILLEK-ADMARKKY-GMHAV 155
K+L +++KE W P+ +S K +LLE+ +++ K+Y H
Sbjct: 62 EHEKVLEIIQKEPNSINSVDSLNWTPLHVAVSNKSIEVVTLLLERNIEISIKRYTAFHIA 121
Query: 156 VANELLSRKEQVVVVTN--NGKI 176
N L+ E+++ + NG I
Sbjct: 122 ACNGDLNIIEKMITMNRVPNGNI 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,482,633
Number of Sequences: 539616
Number of extensions: 2344472
Number of successful extensions: 5601
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5591
Number of HSP's gapped (non-prelim): 13
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)