Query 028319
Match_columns 210
No_of_seqs 173 out of 1208
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:39:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2728 Uncharacterized conser 100.0 1.2E-35 2.6E-40 255.6 14.2 190 15-209 112-301 (302)
2 PRK13982 bifunctional SbtC-lik 100.0 3.8E-35 8.2E-40 274.7 15.8 157 37-201 300-470 (475)
3 PF04127 DFP: DNA / pantothena 100.0 7E-35 1.5E-39 243.7 9.8 130 37-170 47-185 (185)
4 PRK05579 bifunctional phosphop 100.0 2.7E-32 5.8E-37 251.4 16.2 155 39-201 234-397 (399)
5 PRK09620 hypothetical protein; 100.0 4.8E-32 1E-36 233.2 15.6 144 50-201 64-223 (229)
6 TIGR00521 coaBC_dfp phosphopan 100.0 1.5E-31 3.3E-36 245.7 16.1 152 39-197 231-389 (390)
7 PRK06732 phosphopantothenate-- 100.0 3.8E-31 8.3E-36 227.2 16.0 143 50-200 60-227 (229)
8 TIGR02114 coaB_strep phosphopa 100.0 5.7E-30 1.2E-34 219.7 16.5 142 50-199 59-225 (227)
9 COG0452 Dfp Phosphopantothenoy 99.9 6.2E-27 1.4E-31 215.4 14.1 156 39-201 229-391 (392)
10 PRK07097 gluconate 5-dehydroge 70.5 16 0.00035 30.8 6.6 58 26-86 45-102 (265)
11 PF00106 adh_short: short chai 53.1 34 0.00074 26.3 5.1 59 25-86 37-95 (167)
12 PF04413 Glycos_transf_N: 3-De 50.8 32 0.00069 28.5 4.8 101 43-158 22-125 (186)
13 PF07302 AroM: AroM protein; 49.1 46 0.00099 28.9 5.6 57 105-161 129-188 (221)
14 cd09013 BphC-JF8_N_like N-term 47.3 40 0.00086 24.7 4.4 50 124-175 62-111 (121)
15 PRK05867 short chain dehydroge 45.5 74 0.0016 26.5 6.3 36 51-86 66-101 (253)
16 PRK13394 3-hydroxybutyrate deh 44.4 81 0.0018 26.1 6.4 36 51-86 64-99 (262)
17 PRK07523 gluconate 5-dehydroge 42.7 90 0.002 25.9 6.4 36 51-86 67-102 (255)
18 PRK07062 short chain dehydroge 41.6 92 0.002 26.0 6.3 36 51-86 67-102 (265)
19 PRK07109 short chain dehydroge 40.9 93 0.002 27.7 6.5 36 51-86 65-100 (334)
20 cd08344 MhqB_like_N N-terminal 40.6 1.2E+02 0.0026 21.8 6.1 53 127-183 58-111 (112)
21 TIGR02415 23BDH acetoin reduct 40.3 1.1E+02 0.0024 25.2 6.5 35 51-85 57-91 (254)
22 PRK06194 hypothetical protein; 39.8 1E+02 0.0022 26.1 6.4 36 51-86 63-98 (287)
23 PRK08643 acetoin reductase; Va 39.4 1.2E+02 0.0025 25.2 6.6 36 51-86 59-94 (256)
24 PRK08085 gluconate 5-dehydroge 39.2 1.1E+02 0.0024 25.3 6.4 36 51-86 66-101 (254)
25 KOG2792 Putative cytochrome C 38.9 70 0.0015 28.7 5.2 86 103-199 180-277 (280)
26 PF02887 PK_C: Pyruvate kinase 36.5 1E+02 0.0022 23.1 5.3 49 102-152 40-89 (117)
27 PRK06720 hypothetical protein; 36.3 1.4E+02 0.003 24.1 6.4 36 51-86 73-108 (169)
28 PRK09242 tropinone reductase; 36.1 1.3E+02 0.0028 25.0 6.4 36 51-86 68-103 (257)
29 PF01073 3Beta_HSD: 3-beta hyd 36.0 28 0.00061 30.5 2.3 30 53-86 52-81 (280)
30 PRK09134 short chain dehydroge 36.0 92 0.002 25.9 5.4 36 51-86 67-102 (258)
31 PRK06138 short chain dehydroge 35.7 48 0.001 27.2 3.6 36 51-86 61-96 (252)
32 PRK06114 short chain dehydroge 35.1 95 0.0021 25.9 5.4 36 51-86 66-101 (254)
33 PRK08993 2-deoxy-D-gluconate 3 34.8 48 0.001 27.7 3.5 36 51-86 65-100 (253)
34 PRK05866 short chain dehydroge 34.3 1.5E+02 0.0033 25.7 6.7 36 51-86 97-132 (293)
35 COG1086 Predicted nucleoside-d 33.9 68 0.0015 31.8 4.7 62 11-81 274-335 (588)
36 PRK07832 short chain dehydroge 33.7 1.7E+02 0.0036 24.7 6.7 36 51-86 58-93 (272)
37 PRK07063 short chain dehydroge 33.4 1.4E+02 0.0029 24.9 6.1 36 51-86 66-101 (260)
38 PRK08251 short chain dehydroge 33.2 1.5E+02 0.0034 24.2 6.3 36 51-86 61-96 (248)
39 PF02879 PGM_PMM_II: Phosphogl 32.5 91 0.002 22.7 4.3 34 139-174 71-104 (104)
40 PTZ00150 phosphoglucomutase-2- 31.5 1.6E+02 0.0034 28.9 6.9 56 138-199 282-337 (584)
41 PRK07478 short chain dehydroge 31.2 1.7E+02 0.0038 24.1 6.4 33 51-83 63-95 (254)
42 PRK05876 short chain dehydroge 31.2 1.8E+02 0.0038 24.9 6.5 36 51-86 63-98 (275)
43 PF02601 Exonuc_VII_L: Exonucl 30.8 2E+02 0.0044 25.4 7.0 46 111-157 29-81 (319)
44 PRK12938 acetyacetyl-CoA reduc 30.7 1.3E+02 0.0028 24.6 5.5 35 51-85 61-95 (246)
45 PRK08063 enoyl-(acyl carrier p 30.2 1.3E+02 0.0029 24.6 5.5 36 51-86 62-97 (250)
46 PRK06841 short chain dehydroge 30.1 67 0.0014 26.6 3.6 36 51-86 69-104 (255)
47 PRK12744 short chain dehydroge 29.8 1.4E+02 0.003 24.9 5.5 35 51-85 69-103 (257)
48 PRK12937 short chain dehydroge 29.7 1.4E+02 0.0031 24.3 5.5 36 51-86 63-98 (245)
49 PRK06139 short chain dehydroge 29.5 1.8E+02 0.004 25.9 6.6 36 51-86 64-99 (330)
50 PRK06398 aldose dehydrogenase; 29.3 70 0.0015 26.9 3.6 36 51-86 52-87 (258)
51 PRK08213 gluconate 5-dehydroge 28.9 2.1E+02 0.0045 23.7 6.5 36 51-86 69-104 (259)
52 PRK07791 short chain dehydroge 28.8 1.4E+02 0.003 25.7 5.5 34 51-84 72-105 (286)
53 PF05952 ComX: Bacillus compet 28.7 26 0.00056 24.1 0.7 25 106-133 8-32 (57)
54 PRK12827 short chain dehydroge 28.6 1.5E+02 0.0032 24.1 5.4 36 51-86 67-102 (249)
55 PRK12826 3-ketoacyl-(acyl-carr 28.2 2.2E+02 0.0047 23.1 6.4 36 51-86 63-98 (251)
56 PRK12743 oxidoreductase; Provi 28.1 1.6E+02 0.0034 24.6 5.5 36 51-86 60-95 (256)
57 PRK08589 short chain dehydroge 27.8 2E+02 0.0043 24.3 6.2 33 51-83 62-94 (272)
58 TIGR03206 benzo_BadH 2-hydroxy 27.6 2.3E+02 0.0051 23.0 6.5 36 51-86 60-95 (250)
59 PRK08945 putative oxoacyl-(acy 27.5 1.2E+02 0.0026 25.0 4.7 32 53-84 74-105 (247)
60 PRK06124 gluconate 5-dehydroge 27.1 2.4E+02 0.0052 23.2 6.5 36 51-86 68-103 (256)
61 PRK06500 short chain dehydroge 26.1 86 0.0019 25.7 3.6 36 51-86 60-95 (249)
62 COG3320 Putative dehydrogenase 25.9 61 0.0013 30.5 2.8 67 22-91 38-107 (382)
63 PRK06179 short chain dehydroge 25.9 91 0.002 26.1 3.7 36 51-86 53-88 (270)
64 cd03089 PMM_PGM The phosphoman 25.7 3E+02 0.0066 25.6 7.5 53 138-199 212-264 (443)
65 PRK07792 fabG 3-ketoacyl-(acyl 25.6 1.6E+02 0.0034 25.7 5.3 34 51-85 70-103 (306)
66 PRK07035 short chain dehydroge 25.5 2.5E+02 0.0054 23.1 6.3 33 51-83 65-97 (252)
67 PRK12939 short chain dehydroge 25.2 2.7E+02 0.006 22.6 6.5 36 51-86 64-99 (250)
68 PRK06113 7-alpha-hydroxysteroi 25.1 2.7E+02 0.0058 23.0 6.5 35 51-85 68-102 (255)
69 cd05805 MPG1_transferase GTP-m 25.0 3.3E+02 0.0071 25.3 7.6 36 138-175 215-250 (441)
70 PRK08416 7-alpha-hydroxysteroi 25.0 1.7E+02 0.0037 24.4 5.2 32 51-82 67-98 (260)
71 PRK05854 short chain dehydroge 24.8 2.2E+02 0.0047 24.9 6.0 34 51-84 73-106 (313)
72 PRK07856 short chain dehydroge 24.3 99 0.0021 25.7 3.6 35 51-85 55-89 (252)
73 PRK05717 oxidoreductase; Valid 24.2 91 0.002 25.9 3.4 34 51-84 64-97 (255)
74 PRK06180 short chain dehydroge 24.2 95 0.0021 26.3 3.6 36 51-86 58-93 (277)
75 PRK12859 3-ketoacyl-(acyl-carr 23.4 2E+02 0.0043 24.0 5.4 36 51-86 76-111 (256)
76 PRK05872 short chain dehydroge 23.4 1E+02 0.0022 26.6 3.7 36 51-86 65-100 (296)
77 PRK07774 short chain dehydroge 23.4 2.6E+02 0.0057 22.8 6.0 34 51-84 63-96 (250)
78 PRK08277 D-mannonate oxidoredu 23.3 2.7E+02 0.0058 23.4 6.2 33 51-83 67-99 (278)
79 PRK06482 short chain dehydroge 23.2 1E+02 0.0022 25.9 3.6 36 51-86 56-91 (276)
80 KOG1205 Predicted dehydrogenas 22.9 1.6E+02 0.0034 26.5 4.8 35 51-85 71-105 (282)
81 PRK00286 xseA exodeoxyribonucl 22.9 2.3E+02 0.005 26.4 6.1 45 111-156 150-197 (438)
82 PRK09135 pteridine reductase; 22.7 1.1E+02 0.0024 24.8 3.6 34 51-84 65-98 (249)
83 PRK06182 short chain dehydroge 22.7 1.1E+02 0.0025 25.6 3.8 36 51-86 54-89 (273)
84 PRK08217 fabG 3-ketoacyl-(acyl 22.6 3.3E+02 0.0071 22.1 6.4 33 51-83 62-94 (253)
85 PRK06198 short chain dehydroge 22.4 3.1E+02 0.0067 22.5 6.3 35 51-85 64-98 (260)
86 PRK06463 fabG 3-ketoacyl-(acyl 22.0 1.2E+02 0.0025 25.3 3.6 35 51-85 59-93 (255)
87 PRK08594 enoyl-(acyl carrier p 22.0 1.6E+02 0.0035 24.8 4.6 32 51-82 67-98 (257)
88 PRK05599 hypothetical protein; 21.7 3.5E+02 0.0075 22.4 6.5 33 51-83 57-89 (246)
89 PRK06940 short chain dehydroge 21.6 2.9E+02 0.0062 23.5 6.1 31 51-82 57-87 (275)
90 TIGR00735 hisF imidazoleglycer 21.5 2.6E+02 0.0056 24.0 5.8 55 106-161 105-178 (254)
91 smart00822 PKS_KR This enzymat 21.5 1.2E+02 0.0026 22.7 3.3 33 54-86 64-96 (180)
92 PRK08220 2,3-dihydroxybenzoate 21.2 1.2E+02 0.0027 24.8 3.6 36 51-86 56-91 (252)
93 PRK06128 oxidoreductase; Provi 21.2 2.7E+02 0.0059 24.0 5.9 33 51-83 114-146 (300)
94 PRK05650 short chain dehydroge 21.2 3.5E+02 0.0076 22.6 6.5 36 51-86 57-92 (270)
95 PRK06123 short chain dehydroge 20.8 2.4E+02 0.0051 23.0 5.2 34 51-84 60-93 (248)
96 PRK12936 3-ketoacyl-(acyl-carr 20.6 1.3E+02 0.0029 24.4 3.7 35 51-85 60-94 (245)
97 PRK05653 fabG 3-ketoacyl-(acyl 20.5 3.7E+02 0.0079 21.6 6.3 36 51-86 62-97 (246)
98 PRK12825 fabG 3-ketoacyl-(acyl 20.4 1.3E+02 0.0029 24.2 3.6 36 51-86 64-99 (249)
99 PRK06935 2-deoxy-D-gluconate 3 20.4 1.3E+02 0.0029 25.0 3.6 36 51-86 71-106 (258)
100 PRK06077 fabG 3-ketoacyl-(acyl 20.1 1.4E+02 0.003 24.4 3.7 36 51-86 64-99 (252)
No 1
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=255.56 Aligned_cols=190 Identities=47% Similarity=0.652 Sum_probs=172.0
Q ss_pred EEEechhhhhHHHHHHHHHHHHHhHHCCcccccCceeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCcccc
Q 028319 15 IAVLSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEH 94 (210)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~p~~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~~~~ 94 (210)
|.-.| +..++++.+++.|+.+-..++++.+||.|+.+|.+.++.++.+++.++++.++++|||||||++|++++++|
T Consensus 112 i~~~e---~~~~vf~~~~~~~k~~~k~~~lL~vpFtT~~~Yl~~L~aiae~Ln~~~sramfYLAAAVSDFyVP~~~mpeH 188 (302)
T KOG2728|consen 112 IEKEE---NALPVFAEALEKYKYAEKAGTLLYVPFTTLADYLWLLRAIAEALNPLGSRAMFYLAAAVSDFYVPESEMPEH 188 (302)
T ss_pred eecCc---hhhHHHHHHHHHHHHHHhhCcEEEEecchHHHHHHHHHHHHHHhccccchHHHHHHHHhcccccChhhcchh
Confidence 44445 788999999999998877788999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEEecCchHHHHHhhccCCCeeEEEEeeecCchHHHHHHHHHHHHcCCCEEEeecccccceEEEEEeCCC
Q 028319 95 KIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNG 174 (210)
Q Consensus 95 KIkk~~~~l~L~L~~~PkIL~~i~~~~~p~~~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~~~~n~v~li~~~~ 174 (210)
||.|+++.|.|+|.++||+|+.+.+.|.|+.++|+||+|||+..||.+|++.|++|++.+||||.+++++.+|++|+++.
T Consensus 189 KIqSg~~~l~i~l~~VPK~L~~Lv~~WaP~AfiiSFKLETDesiLi~KAr~AL~kY~HqlVIAN~LsTRk~~V~fVt~~~ 268 (302)
T KOG2728|consen 189 KIQSGSGPLQITLKPVPKMLSPLVSDWAPKAFIISFKLETDESILINKARKALEKYKHQLVIANLLSTRKSRVVFVTKNI 268 (302)
T ss_pred hcccCCCCceEEeccchHHHHHHHHhhCcceEEEEEEecCChHHHHHHHHHHHHHhCceeeeeehhhhcceeEEEEecCc
Confidence 99998889999999999999999999999999999999999888999999999999999999999999999999999775
Q ss_pred eeeecCCCCCChHHHHHHHHHHHHHHHHHHHhhcC
Q 028319 175 KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 209 (210)
Q Consensus 175 ~~~~~~~~K~~~~eiA~~I~d~i~~~~~~~~~~~~ 209 (210)
...+.. +|. ..-|++.|++.+.++|.+||+..+
T Consensus 269 ~~~~~l-~~~-~~~IE~~ii~~vv~rH~~~I~~a~ 301 (302)
T KOG2728|consen 269 VQWLEL-DKA-PGAIEDSIIKLVVSRHKEFIDEAQ 301 (302)
T ss_pred ceeeec-ccc-cchhHHHHHHHHHHHHHHHHHhhc
Confidence 433322 221 135899999999999999999664
No 2
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=100.00 E-value=3.8e-35 Score=274.71 Aligned_cols=157 Identities=23% Similarity=0.344 Sum_probs=138.5
Q ss_pred HhHHCCcccccCc-eeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCccccccCCCC-CCceEEEecCchHH
Q 028319 37 KAVAGGLLLKLPF-TTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGS-GPLDMQLLQVPKML 114 (210)
Q Consensus 37 ~~i~~~~~l~~p~-~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~~~~KIkk~~-~~l~L~L~~~PkIL 114 (210)
.+|+||..+..|. .+++.|+|+.||++++.+.++ +|++|||||||||+| ++..++||||++ +.++|+|++|||||
T Consensus 300 tlI~Gp~~~~~p~~v~~i~V~ta~eM~~av~~~~~-~Di~I~aAAVaDyrp--~~~~~~KiKk~~~~~~~L~L~~nPDIL 376 (475)
T PRK13982 300 TLISGPVDLADPQGVKVIHVESARQMLAAVEAALP-ADIAIFAAAVADWRV--ATEGGQKLKKGAAGPPPLQLVENPDIL 376 (475)
T ss_pred EEEeCCcCCCCCCCceEEEecCHHHHHHHHHhhCC-CCEEEEeccccceee--ccccccccCcCCCCCceeeeeeCcHHH
Confidence 3489998887776 789999999999999998877 799999999999999 888999999964 45789999999999
Q ss_pred HHHhhcc-CCCeeEEEEeeecCchHHHHHHHHHHHHcCCCEEEeeccc-------ccceEEEEEeCCCe----eeecCCC
Q 028319 115 SVLRKEW-APMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL-------SRKEQVVVVTNNGK----IPVYRDK 182 (210)
Q Consensus 115 ~~i~~~~-~p~~~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~-------~~~n~v~li~~~~~----~~~~~~~ 182 (210)
+.+++.+ .+++++|||||||++ ++++|++||++|||||||||+++ +++|+++||+++|. +.++.++
T Consensus 377 ~~l~~~~~~~~~~lVGFaaEt~~--l~~~A~~KL~~K~~D~IvaN~v~~~~~gfg~d~n~v~ii~~~g~~~~~~~~~~~s 454 (475)
T PRK13982 377 ATISKLAENRPPLVIGFAAETEH--LIDNARAKLARKGCDWIVANDVSPATGVMGGDRNTVHLLSRDGDAEKVESWPVMT 454 (475)
T ss_pred HHHhhhcccCCCEEEEEccCchh--HHHHHHHHHHHcCCCEEEEccCCcCCCCcCCCccEEEEEECCCCccceeEcCCCC
Confidence 9999632 224699999999976 99999999999999999999995 58999999999872 5789999
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 028319 183 TSSDSDVEKPLTKLLVDRH 201 (210)
Q Consensus 183 K~~~~eiA~~I~d~i~~~~ 201 (210)
| .+||++|+|+|.+.+
T Consensus 455 K---~~iA~~Il~~i~~~~ 470 (475)
T PRK13982 455 K---DEVATALVARIASTF 470 (475)
T ss_pred H---HHHHHHHHHHHHHHh
Confidence 9 999999999997654
No 3
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=100.00 E-value=7e-35 Score=243.73 Aligned_cols=130 Identities=31% Similarity=0.424 Sum_probs=105.2
Q ss_pred HhHHCCcccccC-ceeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCccccccCC-CCCCceEEEecCchHH
Q 028319 37 KAVAGGLLLKLP-FTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQS-GSGPLDMQLLQVPKML 114 (210)
Q Consensus 37 ~~i~~~~~l~~p-~~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~~~~KIkk-~~~~l~L~L~~~PkIL 114 (210)
.+|+|+..+..| +.+++++.|+.||++++.+.++++|++|||||||||+| +...++|||| +++.++|+|++|||||
T Consensus 47 ~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAAVsDf~p--~~~~~~KIkK~~~~~l~l~L~~~pkIL 124 (185)
T PF04127_consen 47 TLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELLPSADIIIMAAAVSDFRP--EEPAEGKIKKSSGDELTLELKPTPKIL 124 (185)
T ss_dssp EEEE-TTS----TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB--SEEE--SCHHSS-G---TT-CEEEEEEE-GGHG
T ss_pred EEEecCccccccccceEEEecchhhhhhhhccccCcceeEEEecchhheee--hhccccccccccCcceEEEEEeChHHH
Confidence 348899877767 48999999999999999999999999999999999999 8889999997 4468999999999999
Q ss_pred HHHhhccCCCeeEEEEeeecCchHHHHHHHHHHHHcCCCEEEeeccc-------ccceEEEEE
Q 028319 115 SVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL-------SRKEQVVVV 170 (210)
Q Consensus 115 ~~i~~~~~p~~~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~-------~~~n~v~li 170 (210)
+.+++.|+|++++|||||||+ +++++|++||++||||+||||+++ +++|+++||
T Consensus 125 ~~l~~~~~~~~~lVGFkaEt~--~l~~~A~~kl~~k~~D~IVaN~~~~~~~gfg~~~n~~~ii 185 (185)
T PF04127_consen 125 AELRKNKKPNQFLVGFKAETE--ELIENAKEKLERKGADLIVANDLSQRGSGFGSDTNEVTII 185 (185)
T ss_dssp CCHHHHCSTTTEEEEEEEESC--HHHHHHHHHHHHCT-SEEEEEEGCCCTSSSSSSEEEEEE-
T ss_pred HHHHhcccCCcEEEEEEecCC--cHHHHHHHHhHhhCCCEEEEeCCCcCCCCcCCCceEEEEC
Confidence 999877888899999999997 499999999999999999999998 488999986
No 4
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=100.00 E-value=2.7e-32 Score=251.37 Aligned_cols=155 Identities=25% Similarity=0.387 Sum_probs=135.7
Q ss_pred HHCCcccccCc-eeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCccccccCCCCCCceEEEecCchHHHHH
Q 028319 39 VAGGLLLKLPF-TTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVL 117 (210)
Q Consensus 39 i~~~~~l~~p~-~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~~~~KIkk~~~~l~L~L~~~PkIL~~i 117 (210)
++|+..+..|. ....++.++.+|.+++.+.++..|++||+|||+||+| ....++||||+++.++|+|++|||||+.+
T Consensus 234 v~~~~~~~~~~~~~~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~~~--~~~~~~Kikk~~~~~~l~L~~~pdIl~~l 311 (399)
T PRK05579 234 VSGPVNLPTPAGVKRIDVESAQEMLDAVLAALPQADIFIMAAAVADYRP--ATVAEGKIKKGEGELTLELVPNPDILAEV 311 (399)
T ss_pred eCCCccccCCCCcEEEccCCHHHHHHHHHHhcCCCCEEEEccccccccc--ccccccCccCCCCCceEEEEeCcHHHHHH
Confidence 44554444443 5678999999999999988999999999999999999 88999999997556999999999999999
Q ss_pred hhccCCCe-eEEEEeeecCchHHHHHHHHHHHHcCCCEEEeeccc------ccceEEEEEeCCCe-eeecCCCCCChHHH
Q 028319 118 RKEWAPMA-FCISFKLETDAEILLEKADMARKKYGMHAVVANELL------SRKEQVVVVTNNGK-IPVYRDKTSSDSDV 189 (210)
Q Consensus 118 ~~~~~p~~-~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~------~~~n~v~li~~~~~-~~~~~~~K~~~~ei 189 (210)
++.+ +++ ++|||||||++ ++++|++||++|||||||||+++ +++|+++||+++|. ..++.++| .+|
T Consensus 312 ~~~~-~~~~~~VGFaaEt~~--~~~~A~~kl~~k~~D~ivaN~i~~~~~fg~~~n~~~ii~~~~~~~~~~~~~K---~~i 385 (399)
T PRK05579 312 AALK-DKRPFVVGFAAETGD--VLEYARAKLKRKGLDLIVANDVSAGGGFGSDDNEVTLIWSDGGEVKLPLMSK---LEL 385 (399)
T ss_pred Hhcc-CCCCEEEEEccCCch--HHHHHHHHHHHcCCeEEEEecCCcCCCcCCCceEEEEEECCCcEEEcCCCCH---HHH
Confidence 9765 444 89999999987 89999999999999999999993 68999999999874 57899999 999
Q ss_pred HHHHHHHHHHHH
Q 028319 190 EKPLTKLLVDRH 201 (210)
Q Consensus 190 A~~I~d~i~~~~ 201 (210)
|++|+|++.+++
T Consensus 386 A~~i~~~i~~~~ 397 (399)
T PRK05579 386 ARRLLDEIAERL 397 (399)
T ss_pred HHHHHHHHHHHh
Confidence 999999997654
No 5
>PRK09620 hypothetical protein; Provisional
Probab=99.98 E-value=4.8e-32 Score=233.19 Aligned_cols=144 Identities=23% Similarity=0.319 Sum_probs=122.2
Q ss_pred eeeeeHHhHHHHHHHHhhhcC--CCCEEEEecccCCcccCCCCccc---------cccCCCCCCceEEEecCchHHHHHh
Q 028319 50 TTIFEYLQMLQMIAVSSRSLG--PCSMFYLAAAVSDFYVPWKSMAE---------HKIQSGSGPLDMQLLQVPKMLSVLR 118 (210)
Q Consensus 50 ~tv~~v~sa~em~~~~~~~~~--~~di~I~aAAVSDf~p~~~~~~~---------~KIkk~~~~l~L~L~~~PkIL~~i~ 118 (210)
..+..+.+..+|..++.+.+. .+|++||+||||||+| +.... +||+|+ +.++|+|++|||||+.++
T Consensus 64 ~~~~~V~s~~d~~~~l~~~~~~~~~D~VIH~AAvsD~~~--~~~~~~~~~~~~~~~Ki~~~-~~~~l~L~~~pdIl~~l~ 140 (229)
T PRK09620 64 LELHPFEGIIDLQDKMKSIITHEKVDAVIMAAAGSDWVV--DKICDQEGNVLDMNGKISSD-IAPIIHFQKAPKVLKQIK 140 (229)
T ss_pred eeEEEEecHHHHHHHHHHHhcccCCCEEEECccccceec--ccccccccccccccCCCcCC-CCCeEEEEECcHHHHHHH
Confidence 356678888999888777674 5899999999999999 55444 488885 568999999999999998
Q ss_pred hccCCCeeEEEEeeecCc--hHHHHHHHHHHHHcCCCEEEeeccc---ccceEEEEEeCCCeeeecCCCCCChHHHHHHH
Q 028319 119 KEWAPMAFCISFKLETDA--EILLEKADMARKKYGMHAVVANELL---SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPL 193 (210)
Q Consensus 119 ~~~~p~~~lVGFkaEt~~--e~li~~A~~kL~~k~~D~IVaN~v~---~~~n~v~li~~~~~~~~~~~~K~~~~eiA~~I 193 (210)
+ |.|++++|||||||+. ++++++|++||++|+|||||||+++ ...++++||++++.. .+.++| .++|+.|
T Consensus 141 ~-~~~~~~~vGFkaEt~~~~~~l~~~A~~kl~~k~~D~ivaN~~~~~~g~~~~~~ii~~~~~~-~~~~~K---~~iA~~i 215 (229)
T PRK09620 141 Q-WDPETVLVGFKLESDVNEEELFERAKNRMEEAKASVMIANSPHSLYSRGAMHYVIGQDGKG-QLCNGK---DETAKEI 215 (229)
T ss_pred h-hCCCCEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEECCcccccCCCcEEEEEeCCCcc-ccCCCH---HHHHHHH
Confidence 6 5578899999999985 6799999999999999999999995 244589999999853 477899 9999999
Q ss_pred HHHHHHHH
Q 028319 194 TKLLVDRH 201 (210)
Q Consensus 194 ~d~i~~~~ 201 (210)
++++..+-
T Consensus 216 ~~~i~~~~ 223 (229)
T PRK09620 216 VKRLEVLC 223 (229)
T ss_pred HHHHHHhh
Confidence 99997754
No 6
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=99.97 E-value=1.5e-31 Score=245.74 Aligned_cols=152 Identities=22% Similarity=0.314 Sum_probs=134.2
Q ss_pred HHCCcccccCc-eeeeeHHhHHHHHHHHh-hhcCCCCEEEEecccCCcccCCCCccccccCCCCCCceEEEecCchHHHH
Q 028319 39 VAGGLLLKLPF-TTIFEYLQMLQMIAVSS-RSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSV 116 (210)
Q Consensus 39 i~~~~~l~~p~-~tv~~v~sa~em~~~~~-~~~~~~di~I~aAAVSDf~p~~~~~~~~KIkk~~~~l~L~L~~~PkIL~~ 116 (210)
++|+.....|. ....++.++.+|++++. ..++..|++|||||||||+| ....++||+|.++.++|+|++|||||+.
T Consensus 231 ~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~--~~~~~~Ki~~~~~~~~l~L~~~pdil~~ 308 (390)
T TIGR00521 231 ITGPVSLLTPPGVKSIKVSTAEEMLEAALNELAKDFDIFISAAAVADFKP--KTVFEGKIKKQGEELSLKLVKNPDIIAE 308 (390)
T ss_pred eCCCCccCCCCCcEEEEeccHHHHHHHHHHhhcccCCEEEEccccccccc--cccccccccccCCceeEEEEeCcHHHHH
Confidence 66776554443 57899999999988887 55678999999999999999 7788999999556789999999999999
Q ss_pred HhhccCCCeeEEEEeeecCchHHHHHHHHHHHHcCCCEEEeecccc-----cceEEEEEeCCCeeeecCCCCCChHHHHH
Q 028319 117 LRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLS-----RKEQVVVVTNNGKIPVYRDKTSSDSDVEK 191 (210)
Q Consensus 117 i~~~~~p~~~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~~-----~~n~v~li~~~~~~~~~~~~K~~~~eiA~ 191 (210)
+++.+ |++++|||||||+++ ++++|++||++||||+||||+++. ++|+++||+++|...++.++| .++|+
T Consensus 309 l~~~~-~~~~lvgF~aEt~~~-l~~~A~~kl~~k~~D~ivaN~i~~~~fg~~~n~~~li~~~~~~~~~~~~K---~~iA~ 383 (390)
T TIGR00521 309 VRKIK-KHQVIVGFKAETNDD-LIKYAKEKLKKKNLDMIVANDVSQRGFGSDENEVYIFSKHGHKELPLMSK---LEVAE 383 (390)
T ss_pred HHhhC-CCcEEEEEEcCCCcH-HHHHHHHHHHHcCCCEEEEccCCccccCCCCcEEEEEECCCeEEeCCCCH---HHHHH
Confidence 99865 578999999999865 999999999999999999999974 899999999998778999999 99999
Q ss_pred HHHHHH
Q 028319 192 PLTKLL 197 (210)
Q Consensus 192 ~I~d~i 197 (210)
+|++++
T Consensus 384 ~i~~~~ 389 (390)
T TIGR00521 384 RILDEI 389 (390)
T ss_pred HHHHHh
Confidence 999986
No 7
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=99.97 E-value=3.8e-31 Score=227.20 Aligned_cols=143 Identities=22% Similarity=0.296 Sum_probs=126.6
Q ss_pred eeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCc--------------------cccccCCCCCCceEEEec
Q 028319 50 TTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSM--------------------AEHKIQSGSGPLDMQLLQ 109 (210)
Q Consensus 50 ~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~--------------------~~~KIkk~~~~l~L~L~~ 109 (210)
..+..+.+..+|.+.+.+.++..|++||+|||+||+| ... .++||||+++.++|+|++
T Consensus 60 v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvsd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~Ki~~~~~~~~l~l~~ 137 (229)
T PRK06732 60 LSIIEIENVDDLLETLEPLVKDHDVLIHSMAVSDYTP--VYMTDLEEVSASDNLNEFLTKQNTEAKISSASDYQVLFLKK 137 (229)
T ss_pred eEEEEEecHHHHHHHHHHHhcCCCEEEeCCccCCcee--hhhhhhhhhhhhhhhhhhhccccccCCccCCCCceEEEEEE
Confidence 4667788899999888888888999999999999998 433 489999976678999999
Q ss_pred CchHHHHHhhccCCCeeEEEEeeecCc--hHHHHHHHHHHHHcCCCEEEeeccc---ccceEEEEEeCCCeeeecCCCCC
Q 028319 110 VPKMLSVLRKEWAPMAFCISFKLETDA--EILLEKADMARKKYGMHAVVANELL---SRKEQVVVVTNNGKIPVYRDKTS 184 (210)
Q Consensus 110 ~PkIL~~i~~~~~p~~~lVGFkaEt~~--e~li~~A~~kL~~k~~D~IVaN~v~---~~~n~v~li~~~~~~~~~~~~K~ 184 (210)
|||||+.+++ |+|++++|||||||+. ++++++|++||++|||||||||+++ ++.|+++|+++++. .+.++|
T Consensus 138 ~p~il~~~~~-~~~~~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~vvaN~~~~~~~~~~~~~~i~~~~~--~~~~~K- 213 (229)
T PRK06732 138 TPKVISYVKK-WNPNITLVGFKLLVNVSKEELIKVARASLIKNQADYILANDLTDISADQHKALLVSKNEV--YTAQTK- 213 (229)
T ss_pred ChHHHHHHHh-hCCCcEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEecccccCCCCcEEEEEeCCCe--eeCCCH-
Confidence 9999999987 5688899999999983 6799999999999999999999997 58999999999985 467899
Q ss_pred ChHHHHHHHHHHHHHH
Q 028319 185 SDSDVEKPLTKLLVDR 200 (210)
Q Consensus 185 ~~~eiA~~I~d~i~~~ 200 (210)
.+||+.|++++...
T Consensus 214 --~~~a~~i~~~~~~~ 227 (229)
T PRK06732 214 --EEIADLLLERIEKY 227 (229)
T ss_pred --HHHHHHHHHHHHhh
Confidence 99999999998764
No 8
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=99.97 E-value=5.7e-30 Score=219.66 Aligned_cols=142 Identities=21% Similarity=0.286 Sum_probs=126.2
Q ss_pred eeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCc--------------------cccccCCCCCCceEEEec
Q 028319 50 TTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSM--------------------AEHKIQSGSGPLDMQLLQ 109 (210)
Q Consensus 50 ~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~--------------------~~~KIkk~~~~l~L~L~~ 109 (210)
..+.++.+..+|++++.+.++..|++||+||++||.| ... .++||||+.+.++|+|++
T Consensus 59 ~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnAgv~d~~~--~~~~s~e~~~~~~~~~~~~~~~~~~~Ki~~~~~~~~l~l~~ 136 (227)
T TIGR02114 59 LSIREIETTKDLLITLKELVQEHDILIHSMAVSDYTP--VYMTDLEQVQASDNLNEFLSKQNHEAKISSTSEYQVLFLKK 136 (227)
T ss_pred ceeecHHHHHHHHHHHHHHcCCCCEEEECCEeccccc--hhhCCHHHHhhhcchhhhhccccccCCcccCCCceeEEEEE
Confidence 4778899999999999998999999999999999997 332 369999976678999999
Q ss_pred CchHHHHHhhccCCCeeEEEEeeecCc--hHHHHHHHHHHHHcCCCEEEeeccc---ccceEEEEEeCCCeeeecCCCCC
Q 028319 110 VPKMLSVLRKEWAPMAFCISFKLETDA--EILLEKADMARKKYGMHAVVANELL---SRKEQVVVVTNNGKIPVYRDKTS 184 (210)
Q Consensus 110 ~PkIL~~i~~~~~p~~~lVGFkaEt~~--e~li~~A~~kL~~k~~D~IVaN~v~---~~~n~v~li~~~~~~~~~~~~K~ 184 (210)
|||||+.+++ +.|++++|||||||+. ++++++|++||++|||||||||+++ ++.|+++||++++. ++.++|
T Consensus 137 ~p~il~~~~~-~~~~~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~ivaN~~~~~~~~~~~~~li~~~~~--~~~~~k- 212 (227)
T TIGR02114 137 TPKVISLVKE-WNPQIHLVGFKLLVNVTQEELVKVARASLIKNQADFILANDLTDISADQHKALLIEKNQV--QTAQTK- 212 (227)
T ss_pred ChHHHHHHHh-hCCCcEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEcchhhcCCCCceEEEEeCCCe--eecCCH-
Confidence 9999999996 4578899999999873 6799999999999999999999994 79999999999983 566899
Q ss_pred ChHHHHHHHHHHHHH
Q 028319 185 SDSDVEKPLTKLLVD 199 (210)
Q Consensus 185 ~~~eiA~~I~d~i~~ 199 (210)
.+||..|++.+..
T Consensus 213 --~~ia~~i~~~~~~ 225 (227)
T TIGR02114 213 --EEIAELLYEKVQK 225 (227)
T ss_pred --HHHHHHHHHHHHh
Confidence 9999999999865
No 9
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=99.94 E-value=6.2e-27 Score=215.37 Aligned_cols=156 Identities=21% Similarity=0.373 Sum_probs=142.2
Q ss_pred HHCCcccccCc-eeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCccccccCCCCCCceEEEecCchHHHHH
Q 028319 39 VAGGLLLKLPF-TTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVL 117 (210)
Q Consensus 39 i~~~~~l~~p~-~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~~~~KIkk~~~~l~L~L~~~PkIL~~i 117 (210)
++|+..+..|. ...+.+.|+.||.+++......+|++|++|||+||+| +...++||+|..+.++|+|.+|||||..+
T Consensus 229 v~g~~~~~~p~~v~~v~v~sa~em~~av~~~~~~~d~~i~~aAvaD~~~--~~~~~~Kikk~~~~~~l~l~~n~dil~~~ 306 (392)
T COG0452 229 VSGPTSLKIPAGVEVVKVESAEEMLNAVLEAALPADIFISAAAVADYRP--KWVAEAKIKKQGEPFKLELVPNPDILASV 306 (392)
T ss_pred ecCCCcCCCCCcceeeeeeeHHHHHHHHHhcccccCEEEEecccccccc--ccccccceeecCCcceEEeccChhHHHHH
Confidence 88988888887 5699999999999999987788999999999999999 88999999997667999999999999999
Q ss_pred hhccCCCeeEEEEeeecCchHHHHHHHHHHHHcCCCEEEeeccc-----ccceEEEEEeCCCe-eeecCCCCCChHHHHH
Q 028319 118 RKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELL-----SRKEQVVVVTNNGK-IPVYRDKTSSDSDVEK 191 (210)
Q Consensus 118 ~~~~~p~~~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~-----~~~n~v~li~~~~~-~~~~~~~K~~~~eiA~ 191 (210)
+..+...+++|||++||+. ++++|++||++|++|+||+|+++ ++.|++++++++|. ..++.++| .++|+
T Consensus 307 ~~~~~~~~~~Vgfaaet~~--~~~~a~~kl~~k~~D~i~aNdv~~~~fg~d~n~~~~~~~d~~~~~~~~~~k---~~~a~ 381 (392)
T COG0452 307 ARDYPKKNILVGFAAETGD--IVEYAREKLERKNLDLIVANDVSEIGFGSDDNEVRIIDKDGEDVELPEMSK---EELAE 381 (392)
T ss_pred HhhccCCCeEEEEeccchH--HHHHHHHhhhhcCCCeEEeccccccCCCCCccceEEecCCCCeeeccccCH---HHHHH
Confidence 9865333389999999998 99999999999999999999998 58999999999885 79999999 99999
Q ss_pred HHHHHHHHHH
Q 028319 192 PLTKLLVDRH 201 (210)
Q Consensus 192 ~I~d~i~~~~ 201 (210)
+|++.+.+++
T Consensus 382 ~i~~~i~~~~ 391 (392)
T COG0452 382 RILDEIAELL 391 (392)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 10
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=70.50 E-value=16 Score=30.79 Aligned_cols=58 Identities=7% Similarity=-0.023 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhHHCCcccccCceeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 26 NVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 26 ~~~~~~~~~~~~~i~~~~~l~~p~~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
+.+.+....++.. |.+...++ ..+.+..+..+....+.+.++..|++|++|+++++.+
T Consensus 45 ~~~~~~~~~~~~~--~~~~~~~~-~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~ 102 (265)
T PRK07097 45 ELVDKGLAAYREL--GIEAHGYV-CDVTDEDGVQAMVSQIEKEVGVIDILVNNAGIIKRIP 102 (265)
T ss_pred HHHHHHHHHHHhc--CCceEEEE-cCCCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCCCC
Confidence 3444444444432 33333332 3566777777777777777888999999999988765
No 11
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=53.08 E-value=34 Score=26.27 Aligned_cols=59 Identities=10% Similarity=0.065 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhHHCCcccccCceeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 25 LNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 25 ~~~~~~~~~~~~~~i~~~~~l~~p~~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+......++++.. +.....++ ..+.+..+..++++.+....+.-|++|++|.+..+.+
T Consensus 37 ~~~~~~l~~~l~~~--~~~~~~~~-~D~~~~~~~~~~~~~~~~~~~~ld~li~~ag~~~~~~ 95 (167)
T PF00106_consen 37 SEGAQELIQELKAP--GAKITFIE-CDLSDPESIRALIEEVIKRFGPLDILINNAGIFSDGS 95 (167)
T ss_dssp HHHHHHHHHHHHHT--TSEEEEEE-SETTSHHHHHHHHHHHHHHHSSESEEEEECSCTTSBS
T ss_pred cccccccccccccc--cccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 66666666666643 44444333 3566777778888888878889999999999987444
No 12
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=50.80 E-value=32 Score=28.54 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=51.9
Q ss_pred cccccCceeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCccccccCCCCCCceEEEec--CchHHHHHhhc
Q 028319 43 LLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQ--VPKMLSVLRKE 120 (210)
Q Consensus 43 ~~l~~p~~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~~~~KIkk~~~~l~L~L~~--~PkIL~~i~~~ 120 (210)
..+-+...++-|+..+..+++++.+..++..+++-+--.+.+.. . ..+++. ......-| .|-+.+.+-+.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~--~---~~~~~~---~v~~~~~P~D~~~~~~rfl~~ 93 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREM--A---RKLLPD---RVDVQYLPLDFPWAVRRFLDH 93 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHH--H---HGG-GG---G-SEEE---SSHHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHH--H---HHhCCC---CeEEEEeCccCHHHHHHHHHH
Confidence 44445557899999999999999988889999988876666654 2 122221 11222222 45566666666
Q ss_pred cCCCeeEEEEeeecCc-hHHHHHHHHHHHHcCCCEEEee
Q 028319 121 WAPMAFCISFKLETDA-EILLEKADMARKKYGMHAVVAN 158 (210)
Q Consensus 121 ~~p~~~lVGFkaEt~~-e~li~~A~~kL~~k~~D~IVaN 158 (210)
|+|+.+ +=.||+- .+++.. +.+.|+-++++|
T Consensus 94 ~~P~~~---i~~EtElWPnll~~----a~~~~ip~~LvN 125 (186)
T PF04413_consen 94 WRPDLL---IWVETELWPNLLRE----AKRRGIPVVLVN 125 (186)
T ss_dssp H--SEE---EEES----HHHHHH---------S-EEEEE
T ss_pred hCCCEE---EEEccccCHHHHHH----HhhcCCCEEEEe
Confidence 888653 3357773 445554 456789999999
No 13
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=49.09 E-value=46 Score=28.89 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=39.8
Q ss_pred EEEecCchHHHHHhhccCCCeeEEEEeeec---CchHHHHHHHHHHHHcCCCEEEeeccc
Q 028319 105 MQLLQVPKMLSVLRKEWAPMAFCISFKLET---DAEILLEKADMARKKYGMHAVVANELL 161 (210)
Q Consensus 105 L~L~~~PkIL~~i~~~~~p~~~lVGFkaEt---~~e~li~~A~~kL~~k~~D~IVaN~v~ 161 (210)
=-+.|.|+-+....++|.+-..-+.|++-+ ++++-+..|-+.|...|+|+||..-++
T Consensus 129 GVivP~~eQ~~~~~~kW~~l~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmG 188 (221)
T PF07302_consen 129 GVIVPLPEQIAQQAEKWQPLGNPVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCMG 188 (221)
T ss_pred EEEecCHHHHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 367899999998888896543334555554 333444555566778999999999887
No 14
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=47.30 E-value=40 Score=24.67 Aligned_cols=50 Identities=12% Similarity=0.030 Sum_probs=34.0
Q ss_pred CeeEEEEeeecCchHHHHHHHHHHHHcCCCEEEeecccccceEEEEEeCCCe
Q 028319 124 MAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGK 175 (210)
Q Consensus 124 ~~~lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~~~~n~v~li~~~~~ 175 (210)
+..-+||.+++.. -++.+.+.|+++|++......-....+.+++.+++|.
T Consensus 62 ~~~h~af~v~~~~--~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~ 111 (121)
T cd09013 62 GLGHIAWRASSPE--ALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGH 111 (121)
T ss_pred ceEEEEEEcCCHH--HHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCC
Confidence 3346888887543 6788889999999986433321233457888899884
No 15
>PRK05867 short chain dehydrogenase; Provisional
Probab=45.50 E-value=74 Score=26.45 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=28.5
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++.+.+.+.++..|++|++|++..+.+
T Consensus 66 D~~~~~~~~~~~~~~~~~~g~id~lv~~ag~~~~~~ 101 (253)
T PRK05867 66 DVSQHQQVTSMLDQVTAELGGIDIAVCNAGIITVTP 101 (253)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 566677777777777778889999999999876554
No 16
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=44.40 E-value=81 Score=26.05 Aligned_cols=36 Identities=8% Similarity=0.020 Sum_probs=26.3
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+........++..|++||+|++..+.+
T Consensus 64 Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~ 99 (262)
T PRK13394 64 DVTNEDAVNAGIDKVAERFGSVDILVSNAGIQIVNP 99 (262)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCc
Confidence 455666666666666666788999999999876543
No 17
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=42.68 E-value=90 Score=25.88 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=28.2
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+..+.+.+.++..|++|++|++....|
T Consensus 67 D~~~~~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~ 102 (255)
T PRK07523 67 DVTDHDAVRAAIDAFEAEIGPIDILVNNAGMQFRTP 102 (255)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC
Confidence 566677777777777777888999999999876543
No 18
>PRK07062 short chain dehydrogenase; Provisional
Probab=41.58 E-value=92 Score=25.99 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=28.4
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++.+.+.+.++..|++|++|.+....+
T Consensus 67 D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~ 102 (265)
T PRK07062 67 DVLDEADVAAFAAAVEARFGGVDMLVNNAGQGRVST 102 (265)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC
Confidence 566777777778887777888999999999865543
No 19
>PRK07109 short chain dehydrogenase; Provisional
Probab=40.91 E-value=93 Score=27.71 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=28.2
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+..+.+.+.++..|++|++|+++.+.+
T Consensus 65 Dv~d~~~v~~~~~~~~~~~g~iD~lInnAg~~~~~~ 100 (334)
T PRK07109 65 DVADAEAVQAAADRAEEELGPIDTWVNNAMVTVFGP 100 (334)
T ss_pred cCCCHHHHHHHHHHHHHHCCCCCEEEECCCcCCCCc
Confidence 455666666777777777889999999999987765
No 20
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=40.56 E-value=1.2e+02 Score=21.81 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=34.6
Q ss_pred EEEEeeecCchHHHHHHHHHHHHcCCCEEEeecccccceEEEEEeCCCe-eeecCCCC
Q 028319 127 CISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGK-IPVYRDKT 183 (210)
Q Consensus 127 lVGFkaEt~~e~li~~A~~kL~~k~~D~IVaN~v~~~~n~v~li~~~~~-~~~~~~~K 183 (210)
.++|+...+ -++.+.++|+.+|+.++-.. .......+++.+++|. .++..+.|
T Consensus 58 ~~~~~~~~~---d~~~~~~~l~~~Gi~~~~~~-~~~~~~~~~~~DP~Gn~iel~~~~~ 111 (112)
T cd08344 58 YLSFGIFED---DFAAFARHLEAAGVALAAAP-PGADPDGVWFRDPDGNLLQVKVAEK 111 (112)
T ss_pred eEEEEeEhh---hHHHHHHHHHHcCCceecCC-CcCCCCEEEEECCCCCEEEEecCCC
Confidence 456776544 36788999999999865321 2233457899999984 45544444
No 21
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=40.25 E-value=1.1e+02 Score=25.20 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=26.9
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 85 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~ 85 (210)
.+.+-.+..++++.+.+.++..|++||+|.+....
T Consensus 57 Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag~~~~~ 91 (254)
T TIGR02415 57 DVSDKDQVFSAIDQAAEKFGGFDVMVNNAGVAPIT 91 (254)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCC
Confidence 45566677777777777788899999999986544
No 22
>PRK06194 hypothetical protein; Provisional
Probab=39.77 E-value=1e+02 Score=26.06 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=27.4
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+..+.+.+.++..|++||+|+++...+
T Consensus 63 D~~d~~~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~ 98 (287)
T PRK06194 63 DVSDAAQVEALADAALERFGAVHLLFNNAGVGAGGL 98 (287)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 455666666777777777788999999999987644
No 23
>PRK08643 acetoin reductase; Validated
Probab=39.36 E-value=1.2e+02 Score=25.18 Aligned_cols=36 Identities=11% Similarity=0.078 Sum_probs=28.0
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+++..+.+.++..|++||+|++....+
T Consensus 59 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 94 (256)
T PRK08643 59 DVSDRDQVFAAVRQVVDTFGDLNVVVNNAGVAPTTP 94 (256)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 466666777778788777888999999999866554
No 24
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=39.20 E-value=1.1e+02 Score=25.29 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=28.4
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++.+.+.+.++..|++|++|++....|
T Consensus 66 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 101 (254)
T PRK08085 66 NVTHKQEVEAAIEHIEKDIGPIDVLINNAGIQRRHP 101 (254)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCC
Confidence 566777777888777777888999999999875543
No 25
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=38.87 E-value=70 Score=28.70 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=52.1
Q ss_pred ceEEEec---CchHHHHHhhccCCCeeEEEEeeecCchHHHHHHHHHHH-------HcCCCEEEeecccccceEEEEEeC
Q 028319 103 LDMQLLQ---VPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARK-------KYGMHAVVANELLSRKEQVVVVTN 172 (210)
Q Consensus 103 l~L~L~~---~PkIL~~i~~~~~p~~~lVGFkaEt~~e~li~~A~~kL~-------~k~~D~IVaN~v~~~~n~v~li~~ 172 (210)
+-|.+.| +|..+++..+.+.| .++|+.=.+ +++-.-|++--- .-+=|++|= .+.-.|||++
T Consensus 180 lFIsvDPeRD~~~~~~eY~~eF~p--kllGLTGT~--eqvk~vak~yRVYfs~gp~d~~~DYlVD-----HSi~mYLidP 250 (280)
T KOG2792|consen 180 LFISVDPERDSVEVVAEYVSEFHP--KLLGLTGTT--EQVKQVAKKYRVYFSTGPKDEDQDYLVD-----HSIFMYLIDP 250 (280)
T ss_pred eEEEeCcccCCHHHHHHHHHhcCh--hhhcccCCH--HHHHHHHHHhEEeeccCCCCCCCCeeee-----eeEEEEEECC
Confidence 5678888 66777776666655 588985333 335444443211 114577773 3557889999
Q ss_pred CCee--eecCCCCCChHHHHHHHHHHHHH
Q 028319 173 NGKI--PVYRDKTSSDSDVEKPLTKLLVD 199 (210)
Q Consensus 173 ~~~~--~~~~~~K~~~~eiA~~I~d~i~~ 199 (210)
+|.. .++... ..+++++.|+.++.+
T Consensus 251 eg~Fvd~~GrN~--~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 251 EGEFVDYYGRNY--DADELADSILKHVAS 277 (280)
T ss_pred CcceehhhcccC--CHHHHHHHHHHHHHh
Confidence 9864 333322 237888888877754
No 26
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=36.53 E-value=1e+02 Score=23.11 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=35.7
Q ss_pred CceEEEecCchHHHHHhhccCCCeeEEEEeeec-CchHHHHHHHHHHHHcCC
Q 028319 102 PLDMQLLQVPKMLSVLRKEWAPMAFCISFKLET-DAEILLEKADMARKKYGM 152 (210)
Q Consensus 102 ~l~L~L~~~PkIL~~i~~~~~p~~~lVGFkaEt-~~e~li~~A~~kL~~k~~ 152 (210)
...+-+.+++++.+.+.-.| +.+-+-+.-.. +.+++++.|.+.+.+.|+
T Consensus 40 ~pIiavt~~~~~~r~l~l~~--GV~p~~~~~~~~~~~~~~~~a~~~~~~~g~ 89 (117)
T PF02887_consen 40 VPIIAVTPNESVARQLSLYW--GVYPVLIEEFDKDTEELIAEALEYAKERGL 89 (117)
T ss_dssp SEEEEEESSHHHHHHGGGST--TEEEEECSSHSHSHHHHHHHHHHHHHHTTS
T ss_pred CeEEEEcCcHHHHhhhhccc--ceEEEEeccccccHHHHHHHHHHHHHHcCC
Confidence 46899999999999998766 33333333333 237799999999998876
No 27
>PRK06720 hypothetical protein; Provisional
Probab=36.30 E-value=1.4e+02 Score=24.12 Aligned_cols=36 Identities=8% Similarity=0.141 Sum_probs=26.9
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++.+.+.+.++..|++|++|.+....+
T Consensus 73 Dl~~~~~v~~~v~~~~~~~G~iDilVnnAG~~~~~~ 108 (169)
T PRK06720 73 DMEKQGDWQRVISITLNAFSRIDMLFQNAGLYKIDS 108 (169)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCC
Confidence 455666667777777777888999999998765443
No 28
>PRK09242 tropinone reductase; Provisional
Probab=36.10 E-value=1.3e+02 Score=24.96 Aligned_cols=36 Identities=3% Similarity=-0.154 Sum_probs=28.2
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++.+.+.+.++..|++|++|.+..+.+
T Consensus 68 Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~~~~~~ 103 (257)
T PRK09242 68 DVSDDEDRRAILDWVEDHWDGLHILVNNAGGNIRKA 103 (257)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 455666777777887777889999999999876654
No 29
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=36.00 E-value=28 Score=30.50 Aligned_cols=30 Identities=10% Similarity=-0.014 Sum_probs=20.5
Q ss_pred eeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 53 FEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 53 ~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.|+.+..++.+ .+..+|++||+||+.++..
T Consensus 52 ~Di~d~~~l~~----a~~g~d~V~H~Aa~~~~~~ 81 (280)
T PF01073_consen 52 GDITDPESLEE----ALEGVDVVFHTAAPVPPWG 81 (280)
T ss_pred eccccHHHHHH----HhcCCceEEEeCccccccC
Confidence 44444444433 3567899999999988764
No 30
>PRK09134 short chain dehydrogenase; Provisional
Probab=35.96 E-value=92 Score=25.95 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=27.0
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+.++.+.+.++..|++||+|++.+..+
T Consensus 67 Dl~d~~~~~~~~~~~~~~~~~iD~vi~~ag~~~~~~ 102 (258)
T PRK09134 67 DLADEAEVRALVARASAALGPITLLVNNASLFEYDS 102 (258)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCcCCCCCc
Confidence 455666666777777777788999999999876554
No 31
>PRK06138 short chain dehydrogenase; Provisional
Probab=35.66 E-value=48 Score=27.25 Aligned_cols=36 Identities=6% Similarity=-0.083 Sum_probs=29.6
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++.+.+.+.++..|++||+|++++..+
T Consensus 61 D~~~~~~~~~~~~~i~~~~~~id~vi~~ag~~~~~~ 96 (252)
T PRK06138 61 DVGSAEAVEALVDFVAARWGRLDVLVNNAGFGCGGT 96 (252)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 566777888888888888889999999999887544
No 32
>PRK06114 short chain dehydrogenase; Provisional
Probab=35.07 E-value=95 Score=25.86 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=27.8
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+-.+..+++..+.+.++.-|++|++|++..+.+
T Consensus 66 D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~ 101 (254)
T PRK06114 66 DVTSKADLRAAVARTEAELGALTLAVNAAGIANANP 101 (254)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 455666677777777777888999999999877654
No 33
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=34.82 E-value=48 Score=27.71 Aligned_cols=36 Identities=6% Similarity=-0.005 Sum_probs=29.0
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++++++.+.++..|++|++|++..+.+
T Consensus 65 Dl~~~~~~~~~~~~~~~~~~~~D~li~~Ag~~~~~~ 100 (253)
T PRK08993 65 DLRKIDGIPALLERAVAEFGHIDILVNNAGLIRRED 100 (253)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 566777888888888888889999999999876554
No 34
>PRK05866 short chain dehydrogenase; Provisional
Probab=34.28 E-value=1.5e+02 Score=25.68 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=28.0
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++.+.+.+.++..|++|++|++....+
T Consensus 97 Dl~d~~~v~~~~~~~~~~~g~id~li~~AG~~~~~~ 132 (293)
T PRK05866 97 DLSDLDAVDALVADVEKRIGGVDILINNAGRSIRRP 132 (293)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCcc
Confidence 455667777777777777888999999999876554
No 35
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=33.91 E-value=68 Score=31.78 Aligned_cols=62 Identities=15% Similarity=0.030 Sum_probs=41.8
Q ss_pred CCCcEEEechhhhhHHHHHHHHHHHHHhHHCCcccccCceeeeeHHhHHHHHHHHhhhcCCCCEEEEeccc
Q 028319 11 LASHIAVLSLMMRFLNVLRSLRSQQFKAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAV 81 (210)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~p~~tv~~v~sa~em~~~~~~~~~~~di~I~aAAV 81 (210)
+-+.|.+-...|..|..+...++..+. ..-..++ +.||.....|..++.. -..|++|||||-
T Consensus 274 ~p~~i~l~~~~E~~~~~i~~el~~~~~-----~~~~~~~--igdVrD~~~~~~~~~~--~kvd~VfHAAA~ 335 (588)
T COG1086 274 NPKEIILFSRDEYKLYLIDMELREKFP-----ELKLRFY--IGDVRDRDRVERAMEG--HKVDIVFHAAAL 335 (588)
T ss_pred CCCEEEEecCchHHHHHHHHHHHhhCC-----CcceEEE--ecccccHHHHHHHHhc--CCCceEEEhhhh
Confidence 346788888889999999998877653 1223333 5566666666555432 236999999994
No 36
>PRK07832 short chain dehydrogenase; Provisional
Probab=33.70 E-value=1.7e+02 Score=24.69 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=28.0
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+..+.+.+.++..|++||+|++..+.+
T Consensus 58 D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~ 93 (272)
T PRK07832 58 DISDYDAVAAFAADIHAAHGSMDVVMNIAGISAWGT 93 (272)
T ss_pred eCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCc
Confidence 456666777777777777888999999999876654
No 37
>PRK07063 short chain dehydrogenase; Provisional
Probab=33.35 E-value=1.4e+02 Score=24.87 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=28.1
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++.+.+.+.++..|++|++|++..+.+
T Consensus 66 Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~~~~~~ 101 (260)
T PRK07063 66 DVTDAASVAAAVAAAEEAFGPLDVLVNNAGINVFAD 101 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEECCCcCCCCC
Confidence 455566667777777788889999999999876654
No 38
>PRK08251 short chain dehydrogenase; Provisional
Probab=33.17 E-value=1.5e+02 Score=24.22 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=28.2
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+....+.+.++..|++|++|++++..+
T Consensus 61 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 96 (248)
T PRK08251 61 DVNDHDQVFEVFAEFRDELGGLDRVIVNAGIGKGAR 96 (248)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCC
Confidence 455666777777777777888999999999987654
No 39
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=32.52 E-value=91 Score=22.70 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcCCCEEEeecccccceEEEEEeCCC
Q 028319 139 LLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNG 174 (210)
Q Consensus 139 li~~A~~kL~~k~~D~IVaN~v~~~~n~v~li~~~~ 174 (210)
-++...+..++.++|+.+++|-..+ ++.+++++|
T Consensus 71 ~l~~~~~~v~~~~ad~g~~~DgDaD--Rl~~vd~~G 104 (104)
T PF02879_consen 71 SLQRLIKIVRESGADLGIAFDGDAD--RLGVVDENG 104 (104)
T ss_dssp TTHHHHHHHHHSTTSEEEEE-TTSS--BEEEEETTS
T ss_pred hhHHHHHHhhccCceEEEEECCcCc--eeEEECCCC
Confidence 4567777777889999999977544 566667654
No 40
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=31.47 E-value=1.6e+02 Score=28.87 Aligned_cols=56 Identities=13% Similarity=-0.012 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCCEEEeecccccceEEEEEeCCCeeeecCCCCCChHHHHHHHHHHHHH
Q 028319 138 ILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVD 199 (210)
Q Consensus 138 ~li~~A~~kL~~k~~D~IVaN~v~~~~n~v~li~~~~~~~~~~~~K~~~~eiA~~I~d~i~~ 199 (210)
+.++.+.+...+.|+|+.+|+|-..| ++.++++.|.. ....+- .++.-.+.+++++
T Consensus 282 ~~l~~~~~~v~~~~adlgia~DpDaD--R~~vvd~~g~~-~~~l~g---d~l~aLla~~ll~ 337 (584)
T PTZ00150 282 GALKLSMETAEAHGSTVVLANDPDAD--RLAVAEKLNNG-WKIFTG---NELGALLAWWAMK 337 (584)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCC--ceEEEEEcCCc-eEEcCh---hHHHHHHHHHHHH
Confidence 46778888888899999999987654 56666655421 111121 4555556665544
No 41
>PRK07478 short chain dehydrogenase; Provisional
Probab=31.16 E-value=1.7e+02 Score=24.12 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=26.4
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCC
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSD 83 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSD 83 (210)
.+.+..+..+..+.+.+.++..|++|++|++..
T Consensus 63 D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~~ 95 (254)
T PRK07478 63 DVRDEAYAKALVALAVERFGGLDIAFNNAGTLG 95 (254)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 556667777777777777888999999999864
No 42
>PRK05876 short chain dehydrogenase; Provisional
Probab=31.16 E-value=1.8e+02 Score=24.89 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=27.8
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+..+.+.+.++..|++|++|+++.+.+
T Consensus 63 Dv~d~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~ 98 (275)
T PRK05876 63 DVRHREEVTHLADEAFRLLGHVDVVFSNAGIVVGGP 98 (275)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCC
Confidence 556666777777777777888999999999976554
No 43
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=30.83 E-value=2e+02 Score=25.40 Aligned_cols=46 Identities=13% Similarity=0.245 Sum_probs=28.0
Q ss_pred chHHHHHhhccCCCeeEEEEeeecC--c-hHHHHHHHHHHHHcC----CCEEEe
Q 028319 111 PKMLSVLRKEWAPMAFCISFKLETD--A-EILLEKADMARKKYG----MHAVVA 157 (210)
Q Consensus 111 PkIL~~i~~~~~p~~~lVGFkaEt~--~-e~li~~A~~kL~~k~----~D~IVa 157 (210)
-||+..+...| |...++=|-+-.. . ..-|-.|-+++...+ +|+||.
T Consensus 29 ~D~~~~~~~r~-~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii 81 (319)
T PF02601_consen 29 QDFLRTLKRRN-PIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIII 81 (319)
T ss_pred HHHHHHHHHhC-CCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEE
Confidence 48888888754 5444444544442 2 345666777776554 888773
No 44
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=30.75 E-value=1.3e+02 Score=24.65 Aligned_cols=35 Identities=6% Similarity=0.037 Sum_probs=26.6
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 85 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~ 85 (210)
.+.+..+..+....+.+.++..|++||+|+++...
T Consensus 61 D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~ 95 (246)
T PRK12938 61 NVGDWDSTKAAFDKVKAEVGEIDVLVNNAGITRDV 95 (246)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 55666666677777777778899999999986543
No 45
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.18 E-value=1.3e+02 Score=24.56 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=27.0
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+...+++.+.+.++..|++|++|+.+...|
T Consensus 62 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 97 (250)
T PRK08063 62 NVGDVEKIKEMFAQIDEEFGRLDVFVNNAASGVLRP 97 (250)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 445556666677777777788999999999887665
No 46
>PRK06841 short chain dehydrogenase; Provisional
Probab=30.12 E-value=67 Score=26.57 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=28.4
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++...+.+.++..|++||+|++.++.+
T Consensus 69 Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~ 104 (255)
T PRK06841 69 DVSDSQSVEAAVAAVISAFGRIDILVNSAGVALLAP 104 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 455666777777777777788999999999987655
No 47
>PRK12744 short chain dehydrogenase; Provisional
Probab=29.77 E-value=1.4e+02 Score=24.88 Aligned_cols=35 Identities=3% Similarity=-0.091 Sum_probs=26.4
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 85 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~ 85 (210)
.+.+..+..+..+.+.+.++..|++|++|++....
T Consensus 69 D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~ 103 (257)
T PRK12744 69 DLTTAAAVEKLFDDAKAAFGRPDIAINTVGKVLKK 103 (257)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCEEEECCcccCCC
Confidence 45566677777777777778899999999986543
No 48
>PRK12937 short chain dehydrogenase; Provisional
Probab=29.65 E-value=1.4e+02 Score=24.26 Aligned_cols=36 Identities=8% Similarity=0.150 Sum_probs=28.0
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++++.+.+.++..|++|++|++..+.+
T Consensus 63 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 98 (245)
T PRK12937 63 DVADAAAVTRLFDAAETAFGRIDVLVNNAGVMPLGT 98 (245)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 455666777777777777888999999999876543
No 49
>PRK06139 short chain dehydrogenase; Provisional
Probab=29.51 E-value=1.8e+02 Score=25.89 Aligned_cols=36 Identities=8% Similarity=-0.003 Sum_probs=26.9
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+..+.+.+.++..|++|++|.+..+.+
T Consensus 64 Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~ 99 (330)
T PRK06139 64 DVTDADQVKALATQAASFGGRIDVWVNNVGVGAVGR 99 (330)
T ss_pred eCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCC
Confidence 455666666666666666788999999999877654
No 50
>PRK06398 aldose dehydrogenase; Validated
Probab=29.31 E-value=70 Score=26.91 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=28.2
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++.+++.+.++..|++|++|++..+.+
T Consensus 52 D~~~~~~i~~~~~~~~~~~~~id~li~~Ag~~~~~~ 87 (258)
T PRK06398 52 DVSNKEQVIKGIDYVISKYGRIDILVNNAGIESYGA 87 (258)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 455566777778888788888999999999876654
No 51
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=28.85 E-value=2.1e+02 Score=23.72 Aligned_cols=36 Identities=6% Similarity=-0.001 Sum_probs=26.7
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+-.+..+..+.+.+.++..|++||+|++.+..+
T Consensus 69 Dl~d~~~i~~~~~~~~~~~~~id~vi~~ag~~~~~~ 104 (259)
T PRK08213 69 DVADEADIERLAEETLERFGHVDILVNNAGATWGAP 104 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 455666666777777777788899999999876443
No 52
>PRK07791 short chain dehydrogenase; Provisional
Probab=28.77 E-value=1.4e+02 Score=25.73 Aligned_cols=34 Identities=9% Similarity=0.142 Sum_probs=27.8
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDF 84 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf 84 (210)
.+.+..+..++.+.+.+.++.-|++|++|++...
T Consensus 72 Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG~~~~ 105 (286)
T PRK07791 72 DIADWDGAANLVDAAVETFGGLDVLVNNAGILRD 105 (286)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence 5677777788888888888999999999998643
No 53
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=28.73 E-value=26 Score=24.14 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEecCchHHHHHhhccCCCeeEEEEeee
Q 028319 106 QLLQVPKMLSVLRKEWAPMAFCISFKLE 133 (210)
Q Consensus 106 ~L~~~PkIL~~i~~~~~p~~~lVGFkaE 133 (210)
-|.+||.++..+.+ .+.-+||+--+
T Consensus 8 YLv~nPevl~kl~~---g~asLIGv~~~ 32 (57)
T PF05952_consen 8 YLVQNPEVLEKLKE---GEASLIGVDKD 32 (57)
T ss_pred HHHHChHHHHHHHc---CCeeEecCCHH
Confidence 36889999999985 45789998644
No 54
>PRK12827 short chain dehydrogenase; Provisional
Probab=28.60 E-value=1.5e+02 Score=24.14 Aligned_cols=36 Identities=6% Similarity=0.118 Sum_probs=27.6
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++++.+.+..+..|++||+|++.+..+
T Consensus 67 Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~ 102 (249)
T PRK12827 67 DVRDFAATRAALDAGVEEFGRLDILVNNAGIATDAA 102 (249)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 556666777777777777788999999999877544
No 55
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=28.17 E-value=2.2e+02 Score=23.14 Aligned_cols=36 Identities=8% Similarity=0.136 Sum_probs=27.0
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+-.+..+.+..+...++..|++||+|+..++.+
T Consensus 63 Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~ 98 (251)
T PRK12826 63 DVRDRAALKAAVAAGVEDFGRLDILVANAGIFPLTP 98 (251)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 455556666666666667788999999999988755
No 56
>PRK12743 oxidoreductase; Provisional
Probab=28.07 E-value=1.6e+02 Score=24.56 Aligned_cols=36 Identities=11% Similarity=0.004 Sum_probs=28.4
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+..+.+.+.++..|++||+|++..+.+
T Consensus 60 Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~ 95 (256)
T PRK12743 60 DLSDLPEGAQALDKLIQRLGRIDVLVNNAGAMTKAP 95 (256)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 566777777777788788888999999999876543
No 57
>PRK08589 short chain dehydrogenase; Validated
Probab=27.78 E-value=2e+02 Score=24.33 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=26.7
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCC
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSD 83 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSD 83 (210)
.+.+..+...+.+.+.+.++..|++|++|++..
T Consensus 62 Dl~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~ 94 (272)
T PRK08589 62 DISDEQQVKDFASEIKEQFGRVDVLFNNAGVDN 94 (272)
T ss_pred ecCCHHHHHHHHHHHHHHcCCcCEEEECCCCCC
Confidence 566667777788888888888999999999864
No 58
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=27.58 E-value=2.3e+02 Score=23.04 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=26.6
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+++..+.+.++..|++|++|++.+..+
T Consensus 60 d~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~ 95 (250)
T TIGR03206 60 DITDRDSVDTAVAAAEQALGPVDVLVNNAGWDKFGP 95 (250)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 455666667777777777788999999999865443
No 59
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=27.49 E-value=1.2e+02 Score=24.96 Aligned_cols=32 Identities=9% Similarity=-0.048 Sum_probs=25.2
Q ss_pred eeHHhHHHHHHHHhhhcCCCCEEEEecccCCc
Q 028319 53 FEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDF 84 (210)
Q Consensus 53 ~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf 84 (210)
.+..+..++...+.+.++..|++||+|+++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~ 105 (247)
T PRK08945 74 ATPQNYQQLADTIEEQFGRLDGVLHNAGLLGE 105 (247)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCcccCC
Confidence 35667777777777778889999999998644
No 60
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=27.09 E-value=2.4e+02 Score=23.24 Aligned_cols=36 Identities=11% Similarity=-0.005 Sum_probs=26.4
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+..+.+...++..|++|++|.+.+..+
T Consensus 68 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 103 (256)
T PRK06124 68 DIADEEAVAAAFARIDAEHGRLDILVNNVGARDRRP 103 (256)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC
Confidence 455666666666677677788899999999876544
No 61
>PRK06500 short chain dehydrogenase; Provisional
Probab=26.13 E-value=86 Score=25.66 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=26.4
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++.+.+.+.++..|++||+|+.+.+.+
T Consensus 60 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 95 (249)
T PRK06500 60 DAGDVAAQKALAQALAEAFGRLDAVFINAGVAKFAP 95 (249)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 344555666777777777788999999999876543
No 62
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.90 E-value=61 Score=30.46 Aligned_cols=67 Identities=7% Similarity=-0.068 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHHHHh--HHCCcccccCc-eeeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcccCCCCc
Q 028319 22 MRFLNVLRSLRSQQFKA--VAGGLLLKLPF-TTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSM 91 (210)
Q Consensus 22 ~~~~~~~~~~~~~~~~~--i~~~~~l~~p~-~tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p~~~~~ 91 (210)
|..+.++.+.++.|... .++.++..+-. .+..+..=...... +.....|.+||+||.-+|.-||.+.
T Consensus 38 E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~~~---~La~~vD~I~H~gA~Vn~v~pYs~L 107 (382)
T COG3320 38 EAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERTWQ---ELAENVDLIIHNAALVNHVFPYSEL 107 (382)
T ss_pred HHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHHHH---HHhhhcceEEecchhhcccCcHHHh
Confidence 44578888888877664 34444443332 12112221222222 2235589999999999988876543
No 63
>PRK06179 short chain dehydrogenase; Provisional
Probab=25.88 E-value=91 Score=26.11 Aligned_cols=36 Identities=8% Similarity=-0.036 Sum_probs=28.6
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++++.+.+.++..|++|++|+++.+.+
T Consensus 53 D~~d~~~~~~~~~~~~~~~g~~d~li~~ag~~~~~~ 88 (270)
T PRK06179 53 DVTDDASVQAAVDEVIARAGRIDVLVNNAGVGLAGA 88 (270)
T ss_pred ecCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCCcC
Confidence 455666777777777777888999999999987654
No 64
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=25.71 E-value=3e+02 Score=25.56 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCCEEEeecccccceEEEEEeCCCeeeecCCCCCChHHHHHHHHHHHHH
Q 028319 138 ILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVD 199 (210)
Q Consensus 138 ~li~~A~~kL~~k~~D~IVaN~v~~~~n~v~li~~~~~~~~~~~~K~~~~eiA~~I~d~i~~ 199 (210)
+-++...+..++.++|+.+++|-. ..++.+++++|.. + +- .++.-.+.+++.+
T Consensus 212 ~~l~~l~~~v~~~~adlgia~D~D--aDR~~ivd~~G~~-l---~~---d~~~~lla~~ll~ 264 (443)
T cd03089 212 ENLEDLIAAVKENGADLGIAFDGD--GDRLGVVDEKGEI-I---WG---DRLLALFARDILK 264 (443)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCC--cceeEEECCCCcE-e---CH---HHHHHHHHHHHHH
Confidence 467778888888999999999765 4577788888742 2 11 4555555555543
No 65
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.58 E-value=1.6e+02 Score=25.65 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=27.3
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 85 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~ 85 (210)
.+.+..+..++.+.+.+ ++..|++|++|++....
T Consensus 70 Dv~d~~~~~~~~~~~~~-~g~iD~li~nAG~~~~~ 103 (306)
T PRK07792 70 DISQRATADELVATAVG-LGGLDIVVNNAGITRDR 103 (306)
T ss_pred CCCCHHHHHHHHHHHHH-hCCCCEEEECCCCCCCC
Confidence 56677777888888877 88999999999986543
No 66
>PRK07035 short chain dehydrogenase; Provisional
Probab=25.53 E-value=2.5e+02 Score=23.06 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=25.4
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCC
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSD 83 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSD 83 (210)
.+.+..+..++.+.+.+.++..|++|++|++..
T Consensus 65 D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~~ 97 (252)
T PRK07035 65 HIGEMEQIDALFAHIRERHGRLDILVNNAAANP 97 (252)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC
Confidence 455666667777777777888999999999754
No 67
>PRK12939 short chain dehydrogenase; Provisional
Probab=25.25 E-value=2.7e+02 Score=22.55 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=27.0
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+.++.+.+.++..|++|++|++.+..+
T Consensus 64 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 99 (250)
T PRK12939 64 DLADPASVQRFFDAAAAALGGLDGLVNNAGITNSKS 99 (250)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 455666666677777666788999999999977644
No 68
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=25.12 E-value=2.7e+02 Score=23.04 Aligned_cols=35 Identities=11% Similarity=0.054 Sum_probs=26.0
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 85 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~ 85 (210)
.+.+-.+..+....+.+.++..|++|++|++....
T Consensus 68 D~~~~~~i~~~~~~~~~~~~~~d~li~~ag~~~~~ 102 (255)
T PRK06113 68 DITSEQELSALADFALSKLGKVDILVNNAGGGGPK 102 (255)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCC
Confidence 45556666677777777778899999999986544
No 69
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=25.03 E-value=3.3e+02 Score=25.32 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCCEEEeecccccceEEEEEeCCCe
Q 028319 138 ILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGK 175 (210)
Q Consensus 138 ~li~~A~~kL~~k~~D~IVaN~v~~~~n~v~li~~~~~ 175 (210)
+-++.+++..++.++|+.+++|-.. .++.+++.+|.
T Consensus 215 ~~l~~l~~~v~~~~adlgia~DgDa--DR~~vvd~~G~ 250 (441)
T cd05805 215 RSLDRLGRIVKALGADFGVIIDPNG--ERLILVDEAGR 250 (441)
T ss_pred hHHHHHHHHHHhCCCCEEEEEcCCC--CEEEEECCCCC
Confidence 4678888888889999999997654 46677888775
No 70
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=24.97 E-value=1.7e+02 Score=24.45 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=26.3
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccC
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVS 82 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVS 82 (210)
.+.+..+..++++.+.+.++..|++|++|+++
T Consensus 67 D~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~ 98 (260)
T PRK08416 67 NILEPETYKELFKKIDEDFDRVDFFISNAIIS 98 (260)
T ss_pred CCCCHHHHHHHHHHHHHhcCCccEEEECcccc
Confidence 45677777888888877788899999999875
No 71
>PRK05854 short chain dehydrogenase; Provisional
Probab=24.76 E-value=2.2e+02 Score=24.95 Aligned_cols=34 Identities=9% Similarity=-0.034 Sum_probs=27.1
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDF 84 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf 84 (210)
.+.+..+..++.+.+.+..+..|++|++|++...
T Consensus 73 Dl~d~~sv~~~~~~~~~~~~~iD~li~nAG~~~~ 106 (313)
T PRK05854 73 DLSSLASVAALGEQLRAEGRPIHLLINNAGVMTP 106 (313)
T ss_pred cCCCHHHHHHHHHHHHHhCCCccEEEECCccccC
Confidence 5667777777777777778889999999998753
No 72
>PRK07856 short chain dehydrogenase; Provisional
Probab=24.25 E-value=99 Score=25.65 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=26.5
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 85 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~ 85 (210)
.+.+..+..+++..+.+.++..|++||+|++..+.
T Consensus 55 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~ 89 (252)
T PRK07856 55 DVRDPDQVAALVDAIVERHGRLDVLVNNAGGSPYA 89 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCC
Confidence 45556667777777777788899999999987544
No 73
>PRK05717 oxidoreductase; Validated
Probab=24.21 E-value=91 Score=25.92 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=25.6
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDF 84 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf 84 (210)
.+.+..+..+.++.+.+.++..|++||+|++.+.
T Consensus 64 Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~~~~ 97 (255)
T PRK05717 64 DVADEAQVAAGVAEVLGQFGRLDALVCNAAIADP 97 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCCcccC
Confidence 4555566666677777777889999999998763
No 74
>PRK06180 short chain dehydrogenase; Provisional
Probab=24.16 E-value=95 Score=26.34 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=28.1
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++.+.+.+.++..|++||+|++..+.+
T Consensus 58 D~~d~~~~~~~~~~~~~~~~~~d~vv~~ag~~~~~~ 93 (277)
T PRK06180 58 DVTDFDAIDAVVADAEATFGPIDVLVNNAGYGHEGA 93 (277)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCCccCCcc
Confidence 455666777777777777888999999999987654
No 75
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.44 E-value=2e+02 Score=23.99 Aligned_cols=36 Identities=14% Similarity=0.015 Sum_probs=27.3
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+.++..++...+.+.++.-|++|++|++..+.+
T Consensus 76 D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~ 111 (256)
T PRK12859 76 DLTQNDAPKELLNKVTEQLGYPHILVNNAAYSTNND 111 (256)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCC
Confidence 456666777777777777788899999999865543
No 76
>PRK05872 short chain dehydrogenase; Provisional
Probab=23.40 E-value=1e+02 Score=26.64 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=28.7
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++.+.+.+.++..|++|++|.+..+.+
T Consensus 65 Dv~d~~~v~~~~~~~~~~~g~id~vI~nAG~~~~~~ 100 (296)
T PRK05872 65 DVTDLAAMQAAAEEAVERFGGIDVVVANAGIASGGS 100 (296)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCcC
Confidence 466667777777777777888999999999987654
No 77
>PRK07774 short chain dehydrogenase; Provisional
Probab=23.35 E-value=2.6e+02 Score=22.79 Aligned_cols=34 Identities=12% Similarity=0.027 Sum_probs=25.5
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDF 84 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf 84 (210)
.+.+..+..+....+.+.++..|++||+|++...
T Consensus 63 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~ 96 (250)
T PRK07774 63 DVSDPDSAKAMADATVSAFGGIDYLVNNAAIYGG 96 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCCCcCC
Confidence 4556666666677777777889999999998653
No 78
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=23.32 E-value=2.7e+02 Score=23.38 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=24.8
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCC
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSD 83 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSD 83 (210)
.+.+..+...+.+.+.+.++..|++||+|++..
T Consensus 67 Dl~~~~~v~~~~~~~~~~~g~id~li~~ag~~~ 99 (278)
T PRK08277 67 DVLDKESLEQARQQILEDFGPCDILINGAGGNH 99 (278)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 455556666677777777889999999999753
No 79
>PRK06482 short chain dehydrogenase; Provisional
Probab=23.22 E-value=1e+02 Score=25.94 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=27.7
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+++..+.+.++..|++||+|+++.+.+
T Consensus 56 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 91 (276)
T PRK06482 56 DVTDSAAVRAVVDRAFAALGRIDVVVSNAGYGLFGA 91 (276)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCcc
Confidence 456666666777776777788899999999987665
No 80
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.94 E-value=1.6e+02 Score=26.47 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=29.2
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 85 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~ 85 (210)
.+.+..+..+.++...+.++.-|++|.+|-++=+.
T Consensus 71 Dvs~~~~~~~~~~~~~~~fg~vDvLVNNAG~~~~~ 105 (282)
T KOG1205|consen 71 DVSDEESVKKFVEWAIRHFGRVDVLVNNAGISLVG 105 (282)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEecCcccccc
Confidence 67777777778888888999999999999988733
No 81
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=22.88 E-value=2.3e+02 Score=26.40 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=24.5
Q ss_pred chHHHHHhhccCCCeeEEEEeeecCc---hHHHHHHHHHHHHcCCCEEE
Q 028319 111 PKMLSVLRKEWAPMAFCISFKLETDA---EILLEKADMARKKYGMHAVV 156 (210)
Q Consensus 111 PkIL~~i~~~~~p~~~lVGFkaEt~~---e~li~~A~~kL~~k~~D~IV 156 (210)
-||+..+...| |...++=|-+-... ..-|-.|-+.+...++|+||
T Consensus 150 ~D~~~~~~~r~-p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dvii 197 (438)
T PRK00286 150 RDILTVLRRRF-PLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLI 197 (438)
T ss_pred HHHHHHHHhcC-CCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEE
Confidence 37888887765 54444445444432 23445555555443456665
No 82
>PRK09135 pteridine reductase; Provisional
Probab=22.70 E-value=1.1e+02 Score=24.83 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=26.3
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDF 84 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf 84 (210)
.+.+..+...++..+.+.++..|++||+|++...
T Consensus 65 Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~ 98 (249)
T PRK09135 65 DLLDPDALPELVAACVAAFGRLDALVNNASSFYP 98 (249)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 5566667777777777778889999999997654
No 83
>PRK06182 short chain dehydrogenase; Validated
Probab=22.67 E-value=1.1e+02 Score=25.65 Aligned_cols=36 Identities=6% Similarity=0.036 Sum_probs=28.0
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+..+.+.+.++..|++|++|.+..+.+
T Consensus 54 Dv~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~ 89 (273)
T PRK06182 54 DVTDEASIKAAVDTIIAEEGRIDVLVNNAGYGSYGA 89 (273)
T ss_pred eCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCc
Confidence 455666667777777777788999999999987665
No 84
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.56 E-value=3.3e+02 Score=22.09 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=23.2
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCC
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSD 83 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSD 83 (210)
.+.+..+..+..+...+.++..|++||+|++..
T Consensus 62 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~ 94 (253)
T PRK08217 62 NVTDEEDVEATFAQIAEDFGQLNGLINNAGILR 94 (253)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCccC
Confidence 344555666666666666677899999998754
No 85
>PRK06198 short chain dehydrogenase; Provisional
Probab=22.44 E-value=3.1e+02 Score=22.55 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=24.8
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 85 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~ 85 (210)
.+.+..+..+.++.+.+.++..|++|++|+++...
T Consensus 64 D~~~~~~~~~~~~~~~~~~g~id~li~~ag~~~~~ 98 (260)
T PRK06198 64 DLSDVEDCRRVVAAADEAFGRLDALVNAAGLTDRG 98 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCCcCCCC
Confidence 44455555666666666678899999999987543
No 86
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.00 E-value=1.2e+02 Score=25.26 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=27.7
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 85 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~ 85 (210)
.+.+..+..++.+.+.+.++..|++|++|++..+.
T Consensus 59 Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~ 93 (255)
T PRK06463 59 DVGNRDQVKKSKEVVEKEFGRVDVLVNNAGIMYLM 93 (255)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCC
Confidence 55667777788888888888899999999986543
No 87
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.99 E-value=1.6e+02 Score=24.78 Aligned_cols=32 Identities=6% Similarity=-0.015 Sum_probs=26.4
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccC
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVS 82 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVS 82 (210)
.+.+..+..+..+.+.+.++.-|++|++|.+.
T Consensus 67 Dv~d~~~v~~~~~~~~~~~g~ld~lv~nag~~ 98 (257)
T PRK08594 67 DVTSDEEITACFETIKEEVGVIHGVAHCIAFA 98 (257)
T ss_pred CCCCHHHHHHHHHHHHHhCCCccEEEECcccC
Confidence 56677777788888888889999999999875
No 88
>PRK05599 hypothetical protein; Provisional
Probab=21.65 E-value=3.5e+02 Score=22.45 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=25.6
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCC
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSD 83 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSD 83 (210)
.+.+..+..+..+.+.+.++.-|++|++|.+..
T Consensus 57 Dv~d~~~v~~~~~~~~~~~g~id~lv~nag~~~ 89 (246)
T PRK05599 57 DAQDLDTHRELVKQTQELAGEISLAVVAFGILG 89 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEecCcCC
Confidence 466666777777777777888999999998754
No 89
>PRK06940 short chain dehydrogenase; Provisional
Probab=21.64 E-value=2.9e+02 Score=23.50 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=22.6
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccC
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVS 82 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVS 82 (210)
.+.+..+..++++.+ +.++..|++|++|++.
T Consensus 57 Dv~d~~~i~~~~~~~-~~~g~id~li~nAG~~ 87 (275)
T PRK06940 57 DVSSRESVKALAATA-QTLGPVTGLVHTAGVS 87 (275)
T ss_pred ecCCHHHHHHHHHHH-HhcCCCCEEEECCCcC
Confidence 455666666666655 4467889999999985
No 90
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=21.49 E-value=2.6e+02 Score=23.99 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=34.2
Q ss_pred EEecCchHHHHHhhccCCCeeEEEEee-------------------ecCchHHHHHHHHHHHHcCCCEEEeeccc
Q 028319 106 QLLQVPKMLSVLRKEWAPMAFCISFKL-------------------ETDAEILLEKADMARKKYGMHAVVANELL 161 (210)
Q Consensus 106 ~L~~~PkIL~~i~~~~~p~~~lVGFka-------------------Et~~e~li~~A~~kL~~k~~D~IVaN~v~ 161 (210)
.+..+|+++..+.+.+.++..+++.-+ +....++++.+ ++|++.|+|.|+.++++
T Consensus 105 ~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~-~~l~~~G~~~iivt~i~ 178 (254)
T TIGR00735 105 AAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWA-KEVEKLGAGEILLTSMD 178 (254)
T ss_pred hHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHH-HHHHHcCCCEEEEeCcC
Confidence 345689999988876633555555432 10112345444 45568999999998765
No 91
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=21.49 E-value=1.2e+02 Score=22.66 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=23.1
Q ss_pred eHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 54 EYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 54 ~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
+.....++...+...++..|.+|++|++.+..+
T Consensus 64 ~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~ 96 (180)
T smart00822 64 DRAALAAALAAIPARLGPLRGVIHAAGVLDDGL 96 (180)
T ss_pred CHHHHHHHHHHHHHHcCCeeEEEEccccCCccc
Confidence 444455555555555777899999999887654
No 92
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=21.21 E-value=1.2e+02 Score=24.81 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=27.0
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+..+.+.+.++..|++|++|++.++.+
T Consensus 56 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 91 (252)
T PRK08220 56 DVSDAAAVAQVCQRLLAETGPLDVLVNAAGILRMGA 91 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCC
Confidence 445555666777777777888999999999877654
No 93
>PRK06128 oxidoreductase; Provisional
Probab=21.18 E-value=2.7e+02 Score=23.96 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=25.7
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCC
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSD 83 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSD 83 (210)
.+.+..+..++++.+.+.++.-|++|++|++..
T Consensus 114 Dl~~~~~v~~~~~~~~~~~g~iD~lV~nAg~~~ 146 (300)
T PRK06128 114 DLKDEAFCRQLVERAVKELGGLDILVNIAGKQT 146 (300)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCcccC
Confidence 455666777777777777888999999999764
No 94
>PRK05650 short chain dehydrogenase; Provisional
Probab=21.18 E-value=3.5e+02 Score=22.59 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=25.9
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+.+..+.+.++..|++||+|.+....+
T Consensus 57 D~~~~~~~~~~~~~i~~~~~~id~lI~~ag~~~~~~ 92 (270)
T PRK05650 57 DVRDYSQLTALAQACEEKWGGIDVIVNNAGVASGGF 92 (270)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 455566666666666666788999999999876543
No 95
>PRK06123 short chain dehydrogenase; Provisional
Probab=20.81 E-value=2.4e+02 Score=23.04 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=25.9
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDF 84 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf 84 (210)
.+.+..+..+.+..+.+.++.-|++||+|+++..
T Consensus 60 Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~ 93 (248)
T PRK06123 60 DVADEADVLRLFEAVDRELGRLDALVNNAGILEA 93 (248)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 4556666677777777777889999999998653
No 96
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=20.59 E-value=1.3e+02 Score=24.36 Aligned_cols=35 Identities=6% Similarity=-0.019 Sum_probs=26.1
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCcc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFY 85 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~ 85 (210)
.+.+..+..++.+...+.++..|++||+|++....
T Consensus 60 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~ 94 (245)
T PRK12936 60 NLSDRDEVKALGQKAEADLEGVDILVNNAGITKDG 94 (245)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCC
Confidence 44556666677777777788899999999986543
No 97
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=20.50 E-value=3.7e+02 Score=21.55 Aligned_cols=36 Identities=8% Similarity=0.158 Sum_probs=25.4
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+-.+..+.+..+...++..|.+||+|+..++.+
T Consensus 62 D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 97 (246)
T PRK05653 62 DVSDEAAVRALIEAAVEAFGALDILVNNAGITRDAL 97 (246)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCCcCCCCC
Confidence 344455555666666566788899999999877754
No 98
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.38 E-value=1.3e+02 Score=24.20 Aligned_cols=36 Identities=8% Similarity=0.093 Sum_probs=26.3
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..+.++.+.+.++..|++|++|+.+++.+
T Consensus 64 D~~~~~~v~~~~~~~~~~~~~id~vi~~ag~~~~~~ 99 (249)
T PRK12825 64 DVTDKAALEAAVAAAVERFGRIDILVNNAGIFEDKP 99 (249)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCC
Confidence 455566666666666666788999999999776654
No 99
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=20.35 E-value=1.3e+02 Score=24.97 Aligned_cols=36 Identities=6% Similarity=-0.023 Sum_probs=28.1
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++.+.+.+.++..|++||+|++....+
T Consensus 71 D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~ 106 (258)
T PRK06935 71 DLTKPESAEKVVKEALEEFGKIDILVNNAGTIRRAP 106 (258)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 566666777778888888888999999999876543
No 100
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.06 E-value=1.4e+02 Score=24.43 Aligned_cols=36 Identities=8% Similarity=0.022 Sum_probs=27.2
Q ss_pred eeeeHHhHHHHHHHHhhhcCCCCEEEEecccCCccc
Q 028319 51 TIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 86 (210)
Q Consensus 51 tv~~v~sa~em~~~~~~~~~~~di~I~aAAVSDf~p 86 (210)
.+.+..+..++++.+.+.++..|++||+|++..+.+
T Consensus 64 D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~ 99 (252)
T PRK06077 64 DVSTREGCETLAKATIDRYGVADILVNNAGLGLFSP 99 (252)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 455566666777777777788999999999876554
Done!