Your job contains 1 sequence.
>028320
MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK
ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE
ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI
TEGSYTNIKVTTPDDLLIAERILNLSSESS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028320
(210 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2065264 - symbol:ISPD species:3702 "Arabidopsi... 877 8.6e-88 1
TIGR_CMR|BA_0084 - symbol:BA_0084 "2-C-methyl-D-erythrito... 327 1.6e-29 1
TIGR_CMR|DET_0059 - symbol:DET_0059 "2-C-methyl-D-erythri... 317 1.9e-28 1
TIGR_CMR|CHY_2342 - symbol:CHY_2342 "2-C-methyl-D-erythri... 283 7.6e-25 1
TIGR_CMR|SO_3438 - symbol:SO_3438 "4-diphosphocytidyl-2C-... 277 3.3e-24 1
TIGR_CMR|GSU_3368 - symbol:GSU_3368 "4-diphosphocytidyl-2... 254 9.0e-22 1
UNIPROTKB|Q46893 - symbol:ispD "4-diphosphocytidyl-2C-met... 251 1.9e-21 1
UNIPROTKB|Q9KUJ2 - symbol:ispD "2-C-methyl-D-erythritol 4... 245 8.0e-21 1
TIGR_CMR|VC_0528 - symbol:VC_0528 "4-diphosphocytidyl-2C-... 245 8.0e-21 1
TIGR_CMR|CPS_1072 - symbol:CPS_1072 "2-C-methyl-D-erythri... 243 1.3e-20 1
TIGR_CMR|ECH_0157 - symbol:ECH_0157 "2-C-methyl-D-erythri... 202 2.9e-16 1
UNIPROTKB|P96864 - symbol:ispD "2-C-methyl-D-erythritol 4... 196 1.3e-15 1
TIGR_CMR|SPO_2090 - symbol:SPO_2090 "2-C-methyl-D-erythri... 179 3.2e-13 1
ZFIN|ZDB-GENE-061110-16 - symbol:ispd "isoprenoid synthas... 172 3.0e-12 1
TIGR_CMR|NSE_0178 - symbol:NSE_0178 "putative 2-C-methyl-... 160 8.2e-12 1
UNIPROTKB|F1NM25 - symbol:F1NM25 "Uncharacterized protein... 162 2.5e-11 1
TIGR_CMR|APH_1277 - symbol:APH_1277 "2-C-methyl-D-erythri... 155 2.8e-11 1
TIGR_CMR|CJE_1779 - symbol:CJE_1779 "ispD/ispF bifunction... 161 2.9e-11 1
UNIPROTKB|A4D126 - symbol:ISPD "Isoprenoid synthase domai... 162 3.5e-11 1
UNIPROTKB|Q28CZ7 - symbol:ispd "Isoprenoid synthase domai... 151 2.3e-09 1
UNIPROTKB|F1SEJ2 - symbol:LOC100623666 "Uncharacterized p... 147 5.0e-09 1
UNIPROTKB|E1BCH6 - symbol:ISPD "Isoprenoid synthase domai... 149 7.0e-09 1
UNIPROTKB|J9NYK6 - symbol:ISPD "Uncharacterized protein" ... 148 9.5e-09 1
RGD|1359368 - symbol:Ispd "isoprenoid synthase domain con... 145 3.1e-08 1
UNIPROTKB|Q5S6T3 - symbol:Ispd "Isoprenoid synthase domai... 145 3.1e-08 1
MGI|MGI:1923097 - symbol:Ispd "isoprenoid synthase domain... 142 8.6e-08 1
GENEDB_PFALCIPARUM|PFA0340w - symbol:PFA0340w "2-C-methyl... 88 1.6e-07 3
UNIPROTKB|Q8I273 - symbol:PFA_0340w "2-C-methyl-D-erythri... 88 1.6e-07 3
>TAIR|locus:2065264 [details] [associations]
symbol:ISPD species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008299 "isoprenoid biosynthetic
process" evidence=IEA] [GO:0009536 "plastid" evidence=NAS]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA;TAS] [GO:0050518
"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0000096 "sulfur amino
acid metabolic process" evidence=RCA] [GO:0006546 "glycine
catabolic process" evidence=RCA] [GO:0006636 "unsaturated fatty
acid biosynthetic process" evidence=RCA] [GO:0006733
"oxidoreduction coenzyme metabolic process" evidence=RCA]
[GO:0006766 "vitamin metabolic process" evidence=RCA] [GO:0008652
"cellular amino acid biosynthetic process" evidence=RCA]
[GO:0009072 "aromatic amino acid family metabolic process"
evidence=RCA] [GO:0009106 "lipoate metabolic process" evidence=RCA]
[GO:0009108 "coenzyme biosynthetic process" evidence=RCA]
[GO:0009117 "nucleotide metabolic process" evidence=RCA]
[GO:0009416 "response to light stimulus" evidence=RCA] [GO:0009695
"jasmonic acid biosynthetic process" evidence=RCA] [GO:0015994
"chlorophyll metabolic process" evidence=RCA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019216
"regulation of lipid metabolic process" evidence=RCA] [GO:0019748
"secondary metabolic process" evidence=RCA] [GO:0031408 "oxylipin
biosynthetic process" evidence=RCA] [GO:0044272 "sulfur compound
biosynthetic process" evidence=RCA] InterPro:IPR001228
InterPro:IPR018294 Pfam:PF01128 PROSITE:PS01295 UniPathway:UPA00056
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016023
GO:GO:0016114 EMBL:AC004136 HOGENOM:HOG000218563 GO:GO:0019288
GO:GO:0050518 TIGRFAMs:TIGR00453 EMBL:AF230737 EMBL:AB037876
EMBL:AK118110 EMBL:BT006120 IPI:IPI00546361 PIR:T00613
RefSeq:NP_565286.1 UniGene:At.10212 PDB:1W77 PDB:2YC3 PDB:2YC5
PDB:2YCM PDBsum:1W77 PDBsum:2YC3 PDBsum:2YC5 PDBsum:2YCM
ProteinModelPortal:P69834 SMR:P69834 STRING:P69834 PaxDb:P69834
PRIDE:P69834 EnsemblPlants:AT2G02500.1 GeneID:814779
KEGG:ath:AT2G02500 GeneFarm:4908 TAIR:At2g02500 eggNOG:COG1211
InParanoid:P69834 KO:K00991 OMA:FPQGAIL PhylomeDB:P69834
ProtClustDB:PLN02728 BioCyc:ARA:AT2G02500-MONOMER
BioCyc:MetaCyc:AT2G02500-MONOMER EvolutionaryTrace:P69834
Genevestigator:P69834 GermOnline:AT2G02500 Uniprot:P69834
Length = 302
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 169/207 (81%), Positives = 190/207 (91%)
Query: 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
MPKQY+PLLGQPIALYSF+TFSRM EVKEIVVVCDP + DIFEE +E I+VDL+F++PGK
Sbjct: 96 MPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFAIPGK 155
Query: 61 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
ERQDSVYSGLQE+D NSELVCIHDSARPLV ++DV+KVL D VGAAVLGVPAKATIKE
Sbjct: 156 ERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKE 215
Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
NS+S VV+TLDRKTLWEMQTPQVIKP+LLKKGFELV EGLEVTDDVSIVE+LKHPVY+
Sbjct: 216 VNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYV 275
Query: 181 TEGSYTNIKVTTPDDLLIAERILNLSS 207
++GSYTNIKVTTPDDLL+AERIL+ S
Sbjct: 276 SQGSYTNIKVTTPDDLLLAERILSEDS 302
>TIGR_CMR|BA_0084 [details] [associations]
symbol:BA_0084 "2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase" species:198094 "Bacillus anthracis str. Ames"
[GO:0008299 "isoprenoid biosynthetic process" evidence=ISS]
[GO:0050518 "2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase activity" evidence=ISS] HAMAP:MF_00108
InterPro:IPR001228 InterPro:IPR018294 Pfam:PF01128 PROSITE:PS01295
UniPathway:UPA00056 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR HOGENOM:HOG000218563 GO:GO:0019288
GO:GO:0050518 TIGRFAMs:TIGR00453 eggNOG:COG1211 KO:K00991
RefSeq:NP_842653.1 RefSeq:YP_016689.1 RefSeq:YP_026371.1
ProteinModelPortal:Q81VV5 DNASU:1088223
EnsemblBacteria:EBBACT00000008482 EnsemblBacteria:EBBACT00000016132
EnsemblBacteria:EBBACT00000020721 GeneID:1088223 GeneID:2814915
GeneID:2850394 KEGG:ban:BA_0084 KEGG:bar:GBAA_0084 KEGG:bat:BAS0085
OMA:IIGQPKD ProtClustDB:PRK00155 BioCyc:BANT260799:GJAJ-96-MONOMER
BioCyc:BANT261594:GJ7F-98-MONOMER Uniprot:Q81VV5
Length = 226
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 78/208 (37%), Positives = 115/208 (55%)
Query: 3 KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD--LKFSLPGK 60
K +L + PI +++ F + K I++ + FEE +K V+ ++F G
Sbjct: 21 KLFLLINEVPIIVHTLRAFEKDKACKNIIMAINEEERPYFEELMQKYPVEKPVQFIQGGA 80
Query: 61 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
ERQDSVY+ +Q + E V +HD ARP V +K +Q VL A + GA++ VP K T+K+
Sbjct: 81 ERQDSVYNAIQHTT-DVEYVLVHDGARPFVTNKVIQDVLTAAEKYGASICAVPVKDTVKK 139
Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
+ VV T++R L +QTPQ LL + + TDD S+VE + V +
Sbjct: 140 VE-QGVVVETVERSQLKAVQTPQGFSVSLLLEAHRSAKQSCFLGTDDASLVERIGKQVGV 198
Query: 181 TEGSYTNIKVTTPDDLLIAERILNLSSE 208
EGSY NIKVTTP+DLLIAE L++ +
Sbjct: 199 VEGSYYNIKVTTPEDLLIAESFLHVQKK 226
>TIGR_CMR|DET_0059 [details] [associations]
symbol:DET_0059 "2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase" species:243164 "Dehalococcoides ethenogenes
195" [GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0050518
"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity"
evidence=ISS] HAMAP:MF_00108 InterPro:IPR001228 InterPro:IPR018294
Pfam:PF01128 PROSITE:PS01295 UniPathway:UPA00056 EMBL:CP000027
GenomeReviews:CP000027_GR HOGENOM:HOG000218563 GO:GO:0019288
GO:GO:0050518 TIGRFAMs:TIGR00453 eggNOG:COG1211 KO:K00991
OMA:IIGQPKD ProtClustDB:PRK00155 RefSeq:YP_180812.1
ProteinModelPortal:Q3ZAD7 STRING:Q3ZAD7 GeneID:3229038
KEGG:det:DET0059 PATRIC:21607217 BioCyc:DETH243164:GJNF-59-MONOMER
Uniprot:Q3ZAD7
Length = 227
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 79/203 (38%), Positives = 116/203 (57%)
Query: 3 KQYLPLLGQPIALYSFYTFSRMVEVKEI-VVVCDPSYSDIFEETKE-KINVDLKFSLPGK 60
K + L G+P+ ++ F + E+ +I +VV + + E KE + + G+
Sbjct: 25 KIFARLSGKPVLAHTLSVFQQSPEIDDIALVVSEHNLKKAKELVKEYNFSKVIAICSGGE 84
Query: 61 ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKE 120
RQDSV SGL + + V IHD ARPL+ + + L A G+AV VP K T+KE
Sbjct: 85 LRQDSVSSGLTAL-CDCGWVLIHDGARPLLDPVSIPEGLEAAKLCGSAVAAVPLKDTVKE 143
Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
+ E V +TL R+ L +QTPQV + D+++K + R G+ TDD +VE LK PV I
Sbjct: 144 ISPEGLVEKTLPREKLISVQTPQVFRADIIQKAYR---RVGITATDDAQLVEKLKLPVKI 200
Query: 181 TEGSYTNIKVTTPDDLLIAERIL 203
G+Y NIK+TTP+DLL+AE +L
Sbjct: 201 FSGAYANIKITTPEDLLMAEILL 223
>TIGR_CMR|CHY_2342 [details] [associations]
symbol:CHY_2342 "2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=ISS]
[GO:0050518 "2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase activity" evidence=ISS] HAMAP:MF_00108
InterPro:IPR001228 Pfam:PF01128 PROSITE:PS01295 UniPathway:UPA00056
EMBL:CP000141 GenomeReviews:CP000141_GR HOGENOM:HOG000218563
GO:GO:0019288 GO:GO:0050518 TIGRFAMs:TIGR00453 eggNOG:COG1211
KO:K00991 RefSeq:YP_361147.1 ProteinModelPortal:Q3A9N7
STRING:Q3A9N7 GeneID:3728481 KEGG:chy:CHY_2342 PATRIC:21277751
OMA:ALKITRP BioCyc:CHYD246194:GJCN-2341-MONOMER Uniprot:Q3A9N7
Length = 233
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 65/204 (31%), Positives = 111/204 (54%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV-DLKFSLPGK 60
PKQ+L L G P+ + + + V ++V+ +Y ++ + + N+ +K + G
Sbjct: 22 PKQFLELSGIPVIIITLKRMVNLPIVGQVVLTVPENYIEVAGDLLSRYNLAGIKLTAGGT 81
Query: 61 ERQDSVYSGLQEVDFNSELVCIHDSARPL----VLSKDVQKVLMDALRVGAAVLGVPAKA 116
R++SV G++ + N ++ +HD RP LS+ V+K L + G A+L VP +
Sbjct: 82 TRRESVLRGIRALTGNFSIIAVHDGVRPFFPKGALSEGVKK-LSEGY--GGAILAVPLRD 138
Query: 117 TIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKH 176
T+KE ++ V+ TLDR L+ +QTPQ+ + + L KG L ++ L+ DD +VE
Sbjct: 139 TVKEVK-DNVVISTLDRSRLYAVQTPQIFRREALLKGHALGEKQHLDAVDDSILVELCGE 197
Query: 177 PVYITEGSYTNIKVTTPDDLLIAE 200
V + G Y N+K+T P+DL AE
Sbjct: 198 TVAVIPGDYKNLKITWPEDLEFAE 221
>TIGR_CMR|SO_3438 [details] [associations]
symbol:SO_3438 "4-diphosphocytidyl-2C-methyl-D-erythritol
synthase" species:211586 "Shewanella oneidensis MR-1" [GO:0008299
"isoprenoid biosynthetic process" evidence=ISS] [GO:0050518
"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity"
evidence=ISS] HAMAP:MF_00108 InterPro:IPR001228 Pfam:PF01128
PROSITE:PS01295 UniPathway:UPA00056 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0019288 GO:GO:0050518
TIGRFAMs:TIGR00453 eggNOG:COG1211 KO:K00991 OMA:FPQGAIL
ProtClustDB:PRK00155 HOGENOM:HOG000218564 RefSeq:NP_718991.1
ProteinModelPortal:Q8EBR2 GeneID:1171113 KEGG:son:SO_3438
PATRIC:23526564 Uniprot:Q8EBR2
Length = 249
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 69/203 (33%), Positives = 106/203 (52%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
PKQYLPLLGQ I ++ + +++V P +D + + K + LK + G E
Sbjct: 44 PKQYLPLLGQSILAHTLDKLLSHPLISQVIVALHPEDADFYALPQAK-HPKLKTVIGGSE 102
Query: 62 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKE 120
R +SV + L + NS + +HD+ARP +++ D+ K+L ++ A+L +P + T+K
Sbjct: 103 RANSVLAALDKAPDNSWAL-VHDAARPCLMASDIDKLLTSRVQFPQGAILAMPVRDTMKR 161
Query: 121 ANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYI 180
ANS + T+ R LW TPQ+ LL+ + G VTD+ S +E +
Sbjct: 162 ANSLGEINSTVCRDNLWHALTPQLFPTSLLRLHLQGALNAGAVVTDEASAMEWAGISPGL 221
Query: 181 TEGSYTNIKVTTPDDLLIAERIL 203
G NIKVT PDDL +AE L
Sbjct: 222 VAGRADNIKVTHPDDLELAELFL 244
>TIGR_CMR|GSU_3368 [details] [associations]
symbol:GSU_3368 "4-diphosphocytidyl-2C-methyl-D-erythritol
synthase" species:243231 "Geobacter sulfurreducens PCA" [GO:0008299
"isoprenoid biosynthetic process" evidence=ISS] [GO:0050518
"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity"
evidence=ISS] HAMAP:MF_00108 InterPro:IPR001228 InterPro:IPR018294
Pfam:PF01128 PROSITE:PS01295 UniPathway:UPA00056 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000218563 GO:GO:0019288
GO:GO:0050518 TIGRFAMs:TIGR00453 eggNOG:COG1211 KO:K00991
OMA:IIGQPKD ProtClustDB:PRK00155 RefSeq:NP_954408.1
ProteinModelPortal:Q746Z9 GeneID:2688221 KEGG:gsu:GSU3368
PATRIC:22029591 BioCyc:GSUL243231:GH27-3318-MONOMER Uniprot:Q746Z9
Length = 232
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 68/208 (32%), Positives = 104/208 (50%)
Query: 3 KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIF--EETKEKINVDLKFSLP-- 58
KQYL L G+PI ++ F V I V+ P F + E+ +
Sbjct: 22 KQYLILAGRPILAHTLSVFEGASFVDGIFVIT-PEDEIPFCRDHVVERYGFTKVRGIVAG 80
Query: 59 GKERQDSVYSGLQEVD---FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAK 115
G ERQ SV +GL+ ++ + +++ IHD RP V + + + A A++ VPAK
Sbjct: 81 GAERQHSVLNGLRAMEGTVADDDVILIHDGVRPFVSTDVLARATAVAREDDGALVAVPAK 140
Query: 116 ATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLK 175
T+K + + T R+TLW QTPQ + +++ E+ + E TDD +VE L
Sbjct: 141 DTVKTVE-DGIITGTPPRETLWLAQTPQAFRYAVIRAAHEIADAERFLGTDDAMLVERLG 199
Query: 176 HPVYITEGSYTNIKVTTPDDLLIAERIL 203
V I G Y NIK+TTP+D+++AE L
Sbjct: 200 RSVRIVVGDYRNIKITTPEDMVLAEAFL 227
>UNIPROTKB|Q46893 [details] [associations]
symbol:ispD "4-diphosphocytidyl-2C-methyl-D-erythritol
synthetase monomer" species:83333 "Escherichia coli K-12"
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=IEA] [GO:0008299
"isoprenoid biosynthetic process" evidence=IEA] [GO:0050518
"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity"
evidence=IEA;IDA] [GO:0006744 "ubiquinone biosynthetic process"
evidence=IDA] HAMAP:MF_00108 InterPro:IPR001228 InterPro:IPR018294
Pfam:PF01128 PROSITE:PS01295 UniPathway:UPA00056 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006744 EMBL:U29579 GO:GO:0019288 GO:GO:0050518
TIGRFAMs:TIGR00453 eggNOG:COG1211 KO:K00991 OMA:IIGQPKD
ProtClustDB:PRK00155 HOGENOM:HOG000218564 EMBL:AF230736
EMBL:AB037143 PIR:G65055 RefSeq:NP_417227.1 RefSeq:YP_490956.1
PDB:1H3M PDB:1I52 PDB:1INI PDB:1INJ PDB:1VGT PDB:1VGU PDB:3N9W
PDBsum:1H3M PDBsum:1I52 PDBsum:1INI PDBsum:1INJ PDBsum:1VGT
PDBsum:1VGU PDBsum:3N9W ProteinModelPortal:Q46893 SMR:Q46893
IntAct:Q46893 EnsemblBacteria:EBESCT00000002647
EnsemblBacteria:EBESCT00000015791 GeneID:12933286 GeneID:948269
KEGG:ecj:Y75_p2685 KEGG:eco:b2747 PATRIC:32120900 EchoBASE:EB2913
EcoGene:EG13110 BioCyc:EcoCyc:G7423-MONOMER
BioCyc:ECOL316407:JW2717-MONOMER BioCyc:MetaCyc:G7423-MONOMER
SABIO-RK:Q46893 EvolutionaryTrace:Q46893 Genevestigator:Q46893
Uniprot:Q46893
Length = 236
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 67/203 (33%), Positives = 102/203 (50%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
PKQYL + Q I +S + VK +V+ P S F + + + G E
Sbjct: 26 PKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDE 84
Query: 62 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM--DALRVGAAVLGVPAKATIK 119
R DSV +GL+ +++ V +HD+ARP + D+ ++L + R G +L P + T+K
Sbjct: 85 RADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPVRDTMK 142
Query: 120 EAN-SESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLK-HP 177
A ++ + T+DR LW TPQ +LL EG +TD+ S +E+ HP
Sbjct: 143 RAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHP 202
Query: 178 VYITEGSYTNIKVTTPDDLLIAE 200
+ EG NIKVT P+DL +AE
Sbjct: 203 -QLVEGRADNIKVTRPEDLALAE 224
>UNIPROTKB|Q9KUJ2 [details] [associations]
symbol:ispD "2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase" species:243277 "Vibrio cholerae O1 biovar El
Tor str. N16961" [GO:0008299 "isoprenoid biosynthetic process"
evidence=ISS] [GO:0050518 "2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase activity" evidence=ISS] HAMAP:MF_00108
InterPro:IPR001228 InterPro:IPR018294 Pfam:PF01128 PROSITE:PS01295
UniPathway:UPA00056 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0008299 GO:GO:0019288 GO:GO:0050518 TIGRFAMs:TIGR00453
eggNOG:COG1211 KO:K00991 ProtClustDB:PRK00155 OMA:ALKITRP
PIR:C82311 RefSeq:NP_230179.1 ProteinModelPortal:Q9KUJ2
DNASU:2615819 GeneID:2615819 KEGG:vch:VC0528 PATRIC:20080160
Uniprot:Q9KUJ2
Length = 232
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 68/217 (31%), Positives = 110/217 (50%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDI-FEETKEKINVDLKFSL 57
PKQYL LL + + ++ ++ +VV DP ++++ I VD
Sbjct: 22 PKQYLTLLDKTVLEHTVEHLLEHPLIEHVVVAVSADDPYFANLPLAHHPRVIRVD----- 76
Query: 58 PGKERQDSVYSGLQEVDFN--SELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVP 113
GKER DSV S L+ V + SE V +HD+ARP V D+ +++ AL +GA +L P
Sbjct: 77 GGKERADSVLSALEYVCQHRLSEWVLVHDAARPCVTHADITQLITTALAHPIGA-ILASP 135
Query: 114 AKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEH 173
+ T+K + +V T+DR LW TPQ+ + L++ ++ + +TD+ S E
Sbjct: 136 VRDTMKRGDHLQQIVHTVDRTALWHALTPQMFRAQSLRERLFAALQQQVTITDEASAFEW 195
Query: 174 LKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSESS 210
+ G N+K+T P+DL +AE L+ + E S
Sbjct: 196 RGEKPALVAGRADNLKITQPEDLALAEFYLSRNKEKS 232
>TIGR_CMR|VC_0528 [details] [associations]
symbol:VC_0528 "4-diphosphocytidyl-2C-methyl-D-erythritol
synthase" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0008299 "isoprenoid biosynthetic process" evidence=ISS]
[GO:0050518 "2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase activity" evidence=ISS] HAMAP:MF_00108
InterPro:IPR001228 InterPro:IPR018294 Pfam:PF01128 PROSITE:PS01295
UniPathway:UPA00056 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0008299 GO:GO:0019288 GO:GO:0050518 TIGRFAMs:TIGR00453
eggNOG:COG1211 KO:K00991 ProtClustDB:PRK00155 OMA:ALKITRP
PIR:C82311 RefSeq:NP_230179.1 ProteinModelPortal:Q9KUJ2
DNASU:2615819 GeneID:2615819 KEGG:vch:VC0528 PATRIC:20080160
Uniprot:Q9KUJ2
Length = 232
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 68/217 (31%), Positives = 110/217 (50%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDI-FEETKEKINVDLKFSL 57
PKQYL LL + + ++ ++ +VV DP ++++ I VD
Sbjct: 22 PKQYLTLLDKTVLEHTVEHLLEHPLIEHVVVAVSADDPYFANLPLAHHPRVIRVD----- 76
Query: 58 PGKERQDSVYSGLQEVDFN--SELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVP 113
GKER DSV S L+ V + SE V +HD+ARP V D+ +++ AL +GA +L P
Sbjct: 77 GGKERADSVLSALEYVCQHRLSEWVLVHDAARPCVTHADITQLITTALAHPIGA-ILASP 135
Query: 114 AKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEH 173
+ T+K + +V T+DR LW TPQ+ + L++ ++ + +TD+ S E
Sbjct: 136 VRDTMKRGDHLQQIVHTVDRTALWHALTPQMFRAQSLRERLFAALQQQVTITDEASAFEW 195
Query: 174 LKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSESS 210
+ G N+K+T P+DL +AE L+ + E S
Sbjct: 196 RGEKPALVAGRADNLKITQPEDLALAEFYLSRNKEKS 232
>TIGR_CMR|CPS_1072 [details] [associations]
symbol:CPS_1072 "2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0050518
"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity"
evidence=ISS] HAMAP:MF_00108 InterPro:IPR001228 InterPro:IPR018294
Pfam:PF01128 PROSITE:PS01295 UniPathway:UPA00056 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0019288 GO:GO:0050518
TIGRFAMs:TIGR00453 eggNOG:COG1211 KO:K00991 OMA:IIGQPKD
RefSeq:YP_267816.1 ProteinModelPortal:Q487E9 STRING:Q487E9
GeneID:3522280 KEGG:cps:CPS_1072 PATRIC:21465415
HOGENOM:HOG000218564 BioCyc:CPSY167879:GI48-1154-MONOMER
Uniprot:Q487E9
Length = 243
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 64/219 (29%), Positives = 108/219 (49%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
PKQYL + + I ++ + +++V F E++ + D+ G E
Sbjct: 25 PKQYLRINNETILSHTVMRLLSHPLISQVIVALGTE-DQYFAESELAHHKDIIRVNGGTE 83
Query: 62 RQDSVYSGLQEVDFNS-ELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIK 119
R +SV +GL+ VD + V +HD+ARP V +D+ K++ LR +L P + T+K
Sbjct: 84 RVNSVLNGLKAVDSDKYPWVLVHDAARPCVSHQDIDKLITRCLRKDYGGILATPVRDTMK 143
Query: 120 E-------ANSESFVVR-TLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV 171
A ++ ++ T++R+ LW TPQ+ K D L E L++TD+ S +
Sbjct: 144 RGVLIKDSAKGDNTIIESTVEREQLWHALTPQMYKTDELTLAIEQALENSLKITDEASAI 203
Query: 172 EHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSESS 210
E P + S NIK+T P+DL +AE LN + ++
Sbjct: 204 EQANLPSLLVSASSENIKITHPNDLALAEFYLNKQANNT 242
>TIGR_CMR|ECH_0157 [details] [associations]
symbol:ECH_0157 "2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=ISS] [GO:0050518
"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity"
evidence=ISS] InterPro:IPR001228 Pfam:PF01128 EMBL:CP000236
GenomeReviews:CP000236_GR HOGENOM:HOG000218563 GO:GO:0008299
GO:GO:0050518 eggNOG:COG1211 KO:K00991 RefSeq:YP_506984.1
ProteinModelPortal:Q2GHU9 STRING:Q2GHU9 GeneID:3927220
KEGG:ech:ECH_0157 PATRIC:20575855 OMA:TINNMIS
ProtClustDB:CLSK749414 BioCyc:ECHA205920:GJNR-157-MONOMER
Uniprot:Q2GHU9
Length = 236
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 65/205 (31%), Positives = 101/205 (49%)
Query: 1 MPKQYLPLLGQPIALYSFYTFSRMV---EVKEIVVVCDPSYSDIFEETKEKINVD--LKF 55
+PKQY L G L S T + M+ ++ + VV + +++ +KI D L
Sbjct: 22 IPKQYCSL-GNHNILCS--TINNMISHPKINYVKVVIRKEHQHLYDNCLQKIQNDKLLPP 78
Query: 56 SLPGKERQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPA 114
+ GK RQDSV GL+ + + N V IHD+ RP + K + + L A V+ V +
Sbjct: 79 TYGGKRRQDSVRMGLESIQNINPYFVIIHDACRPFIDLK-ILDTMESILTHYAGVVPVLS 137
Query: 115 KA-TIKEANSESFVVRTLDRKTLWEMQTPQVIK-PDLLKKGFELVNRE-GLEVTDDVSIV 171
TI + V++ +DR ++ +QTPQ K ++L N E E D+ S++
Sbjct: 138 ITDTIHVVHENKTVIQNVDRNSIKLIQTPQAYKYSEILLHHRIAYNTEPNREFPDESSLM 197
Query: 172 EHLKHPVYITEGSYTNIKVTTPDDL 196
H P+ TEG Y N K+TT +DL
Sbjct: 198 IHYNIPIMTTEGDYNNFKITTIEDL 222
>UNIPROTKB|P96864 [details] [associations]
symbol:ispD "2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase" species:1773 "Mycobacterium tuberculosis"
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0002135 "CTP
binding" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IDA] [GO:0030145 "manganese
ion binding" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0042803 "protein homodimerization activity" evidence=IPI]
[GO:0050518 "2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase activity" evidence=IDA] [GO:0051484
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway involved in terpenoid biosynthetic
process" evidence=IDA] HAMAP:MF_00108 InterPro:IPR001228
InterPro:IPR018294 Pfam:PF01128 PROSITE:PS01295 UniPathway:UPA00056
GO:GO:0005886 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0000287 EMBL:BX842583 GO:GO:0008270
GO:GO:0030145 HOGENOM:HOG000218563 GO:GO:0002135 GO:GO:0051484
GO:GO:0050518 TIGRFAMs:TIGR00453 eggNOG:COG1211 KO:K00991
OMA:IIGQPKD ProtClustDB:PRK00155 PIR:D70607 RefSeq:NP_218099.1
RefSeq:NP_338232.1 RefSeq:YP_006517072.1 PDB:2XWN PDB:3OKR PDB:3Q7U
PDB:3Q80 PDBsum:2XWN PDBsum:3OKR PDBsum:3Q7U PDBsum:3Q80
ProteinModelPortal:P96864 SMR:P96864 PRIDE:P96864
EnsemblBacteria:EBMYCT00000001248 EnsemblBacteria:EBMYCT00000070845
GeneID:13317191 GeneID:887787 GeneID:922806 KEGG:mtc:MT3688
KEGG:mtu:Rv3582c KEGG:mtv:RVBD_3582c PATRIC:18129865
TubercuList:Rv3582c EvolutionaryTrace:P96864 Uniprot:P96864
Length = 231
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 62/183 (33%), Positives = 95/183 (51%)
Query: 27 VKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSE--LVCIHD 84
V + VVV P+ D +E ++ + G R D+V L + +E V +HD
Sbjct: 50 VVDTVVVAVPA--DRTDEARQILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHD 107
Query: 85 SARPLVLSKDVQKVLMDALRVG-AAVLGV-PAKATIKEANSESFVVRTLDRKTLWEMQTP 142
+AR L V +V+ +ALR G AAV+ V P TIK ++ V+ T +R L +QTP
Sbjct: 108 AARALTPPALVARVV-EALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTP 166
Query: 143 QVIKPDLLKKGFEL--VNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 200
Q DLL + ++ ++ E TDD S+VEH+ V + +G K+TT DLL+A+
Sbjct: 167 QGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQ 226
Query: 201 RIL 203
I+
Sbjct: 227 AIV 229
>TIGR_CMR|SPO_2090 [details] [associations]
symbol:SPO_2090 "2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase/ 2C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008685
"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity"
evidence=ISS] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=ISS] [GO:0050518
"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity"
evidence=ISS] HAMAP:MF_01520 InterPro:IPR001228 InterPro:IPR003526
InterPro:IPR018294 InterPro:IPR020555 Pfam:PF01128 Pfam:PF02542
PROSITE:PS01295 PROSITE:PS01350 UniPathway:UPA00056 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0016114 GO:GO:0019288
eggNOG:COG0245 HOGENOM:HOG000252034 KO:K12506 GO:GO:0008685
GO:GO:0050518 Gene3D:3.30.1330.50 InterPro:IPR026596
SUPFAM:SSF69765 TIGRFAMs:TIGR00151 RefSeq:YP_167320.1
ProteinModelPortal:Q5LRN5 GeneID:3193402 KEGG:sil:SPO2090
PATRIC:23377521 ProtClustDB:CLSK933757 Uniprot:Q5LRN5
Length = 377
Score = 179 (68.1 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 64/206 (31%), Positives = 97/206 (47%)
Query: 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK 60
+PKQ+ PL G+ +A ++ F+ + ++ +V+V P D ++E L + G
Sbjct: 20 VPKQWRPLAGRRVADWTLDRFA-LRQITHVVLVLHPEDHDAWDEFA---TTPLILAPGGS 75
Query: 61 ERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT 117
+R SV +GL +D V IHD ARP V + + VL DAL GAA G+
Sbjct: 76 DRAGSVRNGLAALDGLGITKVLIHDVARPCVSAATIGAVL-DALDAHPGAAP-GLAVTDA 133
Query: 118 IKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHP 177
+ +E V T +R L+ QTPQ + D + + G DDV + +
Sbjct: 134 LW-TGAEGLVTGTRERDGLFAAQTPQGFRYDAIVAA-HAAHPGG--AADDVEVARAAELT 189
Query: 178 VYITEGSYTNIKVTTPDDLLIAERIL 203
V I G N+K+T +D AERIL
Sbjct: 190 VAIVPGDPDNLKITRAEDFARAERIL 215
>ZFIN|ZDB-GENE-061110-16 [details] [associations]
symbol:ispd "isoprenoid synthase domain containing"
species:7955 "Danio rerio" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0008299 "isoprenoid biosynthetic process"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0048747 "muscle fiber development" evidence=IMP] [GO:0048854
"brain morphogenesis" evidence=IMP] [GO:0035269 "protein O-linked
mannosylation" evidence=IMP] [GO:0060049 "regulation of protein
glycosylation" evidence=IGI;IMP] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] InterPro:IPR001228 InterPro:IPR018294 Pfam:PF01128
PROSITE:PS01295 UniPathway:UPA00378 ZFIN:ZDB-GENE-061110-16
Gene3D:3.40.30.10 InterPro:IPR012336 GO:GO:0048747 GO:GO:0048854
GO:GO:0016779 GO:GO:0008299 GO:GO:0035269 GO:GO:0060049
eggNOG:COG1211 CTD:729920 GeneTree:ENSGT00390000006412
EMBL:BX470068 EMBL:FP102309 EMBL:BC127405 IPI:IPI00512554
IPI:IPI00992860 RefSeq:NP_001071270.1 UniGene:Dr.162124
STRING:A0JPF9 Ensembl:ENSDART00000003192 Ensembl:ENSDART00000140882
GeneID:798716 KEGG:dre:798716 HOGENOM:HOG000113111
HOVERGEN:HBG057782 InParanoid:A0JPF9 OrthoDB:EOG4JT05H
NextBio:20933528 ArrayExpress:A0JPF9 Bgee:A0JPF9 Uniprot:A0JPF9
Length = 462
Score = 172 (65.6 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 57/212 (26%), Positives = 99/212 (46%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN-VDLKFSLPGK 60
PKQ+ + +P+ Y+ F R+ + +VVV D+ K N +K G
Sbjct: 87 PKQFCSIFNRPLISYTIQAFERLPWIVMVVVVVAKDNHDLMLNIVRKFNHTKVKVVHGGT 146
Query: 61 ERQDSVYSGLQ----EVDFNS---ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVP 113
R S+Y+GLQ D ++ ++V IHD+ RP V + K+ + A GA+ P
Sbjct: 147 TRHRSIYNGLQAFSDSTDSSTPKPKVVIIHDAVRPFVEEDLLLKITLAAKEQGASGAIRP 206
Query: 114 AKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEV-TDDVSI-V 171
+T+ SES++ +L+R + PQ D++ + ++ + LE T+ + + +
Sbjct: 207 LVSTVIATTSESYLDHSLERAKYRASEMPQGFLYDIIFQAYQRCSEFDLEFGTECLHLAL 266
Query: 172 EHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 203
++ + EG T KVT DL AE I+
Sbjct: 267 QYCGTNARLIEGPPTLWKVTYKRDLAAAEAII 298
>TIGR_CMR|NSE_0178 [details] [associations]
symbol:NSE_0178 "putative 2-C-methyl-D-erythritol
4-phosphate cytidylyltransferase" species:222891 "Neorickettsia
sennetsu str. Miyayama" [GO:0003824 "catalytic activity"
evidence=ISS] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=ISS]
HAMAP:MF_00108 InterPro:IPR001228 Pfam:PF01128 PROSITE:PS01295
UniPathway:UPA00056 EMBL:CP000237 GenomeReviews:CP000237_GR
HOGENOM:HOG000218563 GO:GO:0019288 GO:GO:0050518 eggNOG:COG1211
KO:K00991 RefSeq:YP_506073.1 ProteinModelPortal:Q2GEM3
STRING:Q2GEM3 GeneID:3932002 KEGG:nse:NSE_0178 PATRIC:22680455
OMA:REQQDFW ProtClustDB:CLSK2528037
BioCyc:NSEN222891:GHFU-209-MONOMER Uniprot:Q2GEM3
Length = 232
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 62/212 (29%), Positives = 97/212 (45%)
Query: 1 MPKQYLPLLGQPIALYSFYT-FSR-MVEVKEIVV--VCDPSYSDIFEETKEKINVDLKFS 56
+PKQYL + G+ I Y+ F+ +E +VV C+ Y I + + S
Sbjct: 22 LPKQYLQVRGKAILQYTVEALFAHPKIECVHLVVNSKCEVHYLPILRNLSGYV---VSLS 78
Query: 57 LPGKERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGV-PA 114
G R DSV+SGL+ ++ N V I D+ARP K + V+ L V+ V P
Sbjct: 79 EAGNTRTDSVFSGLKALECLNPSHVLIQDAARPFTTPKVINAVIKSLLEGCEGVVPVVPV 138
Query: 115 KATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL-VNREGLEVTDDVSIVEH 173
+ TI + E +V ++R L +QTPQ + ++ TDD S+
Sbjct: 139 QDTIIKREPEG-IVTDVNRDELRIVQTPQGFDFCKIFAAYKAHFMCPSKRYTDDGSLA-- 195
Query: 174 LKHPVYIT--EGSYTNIKVTTPDDLLIAERIL 203
L H + + G +N+K+T P DL A+ +L
Sbjct: 196 LAHGIKVECIPGDSSNLKITHPFDLKFADFLL 227
>UNIPROTKB|F1NM25 [details] [associations]
symbol:F1NM25 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0008299 "isoprenoid biosynthetic process" evidence=IEA]
[GO:0035269 "protein O-linked mannosylation" evidence=IEA]
InterPro:IPR001228 InterPro:IPR018294 Pfam:PF01128 PROSITE:PS01295
GO:GO:0003824 GO:GO:0008299 GO:GO:0035269
GeneTree:ENSGT00390000006412 OMA:CYNFVCV EMBL:AADN02000870
EMBL:AADN02000871 EMBL:AADN02000872 EMBL:AADN02000873
EMBL:AADN02000874 IPI:IPI00592251 Ensembl:ENSGALT00000017557
Uniprot:F1NM25
Length = 387
Score = 162 (62.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 55/214 (25%), Positives = 104/214 (48%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-NVDLKFSLPGK 60
PKQ+ + G+P+ Y+ R+ + +I+VV P + + EK + + + G
Sbjct: 27 PKQFCTVQGRPLVSYTVRAMERVSWISDIIVVVSPENIETMKSIIEKYGHKRVTVAEGGI 86
Query: 61 ERQDSVYSGLQ---EVDFNS------ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLG 111
R S+++GL+ E +F++ E+V IHD+ RP V + KV+M A GAA
Sbjct: 87 TRHRSIFNGLKLFSENEFSNHLLQKPEVVIIHDAVRPFVEEDILLKVVMAAKEHGAAGAI 146
Query: 112 VPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEV-TDDVSI 170
P +T+ + ++ + +L+R + PQ D++ + ++ L+ T+ + +
Sbjct: 147 RPLVSTVIASAADGCLDHSLERAKYRASEMPQAFLFDIIYQAYQQCTDYDLDYGTECLHL 206
Query: 171 -VEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 203
+++ K + EG+ KVT DL AE I+
Sbjct: 207 ALKYCKTNAKLVEGTADLWKVTYKRDLYAAESII 240
>TIGR_CMR|APH_1277 [details] [associations]
symbol:APH_1277 "2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0050518
"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity"
evidence=ISS] InterPro:IPR001228 Pfam:PF01128 EMBL:CP000235
GenomeReviews:CP000235_GR HOGENOM:HOG000218563 GO:GO:0008299
GO:GO:0050518 eggNOG:COG1211 KO:K00991 ProtClustDB:CLSK749414
RefSeq:YP_505794.1 ProteinModelPortal:Q2GIK7 STRING:Q2GIK7
GeneID:3931114 KEGG:aph:APH_1277 PATRIC:20951344 OMA:VIMEEIA
BioCyc:APHA212042:GHPM-1280-MONOMER Uniprot:Q2GIK7
Length = 235
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 60/210 (28%), Positives = 101/210 (48%)
Query: 3 KQYLPLLGQPIALYSFYTFSRMVE--VKEIVVVCDPSYSDIFEET----KEKINVDLKFS 56
KQYL + + + T ++MV V + VV +E + +K+ DL
Sbjct: 24 KQYLRIQRHSVLAH---TITQMVTSFVHSVKVVIGQGQDAFYEHSLLSLPKKVT-DLLIP 79
Query: 57 --LPGKERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVP 113
G RQDSV GL+ ++ N E V IHD+ RP S V+ LR A ++ V
Sbjct: 80 PVYGGARRQDSVRIGLESIEHINPEFVIIHDACRPFA-SLPSADVITYHLRDHAGIVPVL 138
Query: 114 AKA-TIKEANSESFVVRTLDRKTLWEMQTPQVIK-PDLLKKGFELVNREGLEV-TDDVSI 170
+ TI + S ++ + + ++ +QTPQ+ + D+L+ E+ + + + +D+ S+
Sbjct: 139 QPSDTISRVEN-SVIMEEIAKDSVRIVQTPQIYRYKDILRCHKEVYSTDPEKYFSDESSV 197
Query: 171 VEHLKHPVYITEGSYTNIKVTTPDDLLIAE 200
+ V TEG Y N K+TT +D+ AE
Sbjct: 198 MVACGMSVITTEGDYNNFKITTAEDVTRAE 227
>TIGR_CMR|CJE_1779 [details] [associations]
symbol:CJE_1779 "ispD/ispF bifunctional enzyme"
species:195099 "Campylobacter jejuni RM1221" [GO:0008685
"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity"
evidence=ISS] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=ISS] [GO:0050518
"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity"
evidence=ISS] HAMAP:MF_01520 InterPro:IPR001228 InterPro:IPR003526
InterPro:IPR018294 InterPro:IPR020555 Pfam:PF01128 Pfam:PF02542
PROSITE:PS01295 PROSITE:PS01350 UniPathway:UPA00056 GO:GO:0046872
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0016114 GO:GO:0019288
RefSeq:YP_179751.1 ProteinModelPortal:Q5HSI4 SMR:Q5HSI4
STRING:Q5HSI4 GeneID:3232406 KEGG:cjr:CJE1779 PATRIC:20045368
eggNOG:COG0245 HOGENOM:HOG000252034 KO:K12506 OMA:DGDIGSH
ProtClustDB:PRK09382 BioCyc:CJEJ195099:GJC0-1809-MONOMER
GO:GO:0008685 GO:GO:0050518 Gene3D:3.30.1330.50 InterPro:IPR026596
SUPFAM:SSF69765 TIGRFAMs:TIGR00453 TIGRFAMs:TIGR00151
Uniprot:Q5HSI4
Length = 371
Score = 161 (61.7 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 64/207 (30%), Positives = 100/207 (48%)
Query: 3 KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKER 62
KQ+L L P+ LY+ S K+IVV S+I +K + +F G R
Sbjct: 23 KQFLRLGNDPLWLYATKNLSSFYPFKKIVVTS----SNI--TYMKKFTKNYEFIEGGDTR 76
Query: 63 QDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEAN 122
+S+ L+ +D SE V + D AR LV SK++ L++ L + PA +K A+
Sbjct: 77 AESLKKALELID--SEFVMVSDVARVLV-SKNLFDRLIENLDKADCI--TPA---LKVAD 128
Query: 123 SESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITE 182
+ F L R+ + +QTPQ+ K LLKK + + LE TDD + + + ++ E
Sbjct: 129 TTLFDNEALQREKIKLIQTPQISKTKLLKKALD----QNLEFTDDSTAIAAMGGKIWFVE 184
Query: 183 GSYTNIKVTTPDDLLIAERILNLSSES 209
G K+T +DL + LNL + S
Sbjct: 185 GEENARKLTFKEDL----KKLNLPTPS 207
>UNIPROTKB|A4D126 [details] [associations]
symbol:ISPD "Isoprenoid synthase domain-containing protein"
species:9606 "Homo sapiens" [GO:0008299 "isoprenoid biosynthetic
process" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0035269 "protein O-linked
mannosylation" evidence=IMP] InterPro:IPR001228 InterPro:IPR018294
Pfam:PF01128 PROSITE:PS01295 UniPathway:UPA00378 EMBL:CH471073
EMBL:CH236948 GO:GO:0016779 Orphanet:899 GO:GO:0008299
GO:GO:0035269 eggNOG:COG1211 CTD:729920 OMA:CYNFVCV
HOGENOM:HOG000113111 HOVERGEN:HBG057782 OrthoDB:EOG4JT05H
EMBL:AC004741 EMBL:AC006035 EMBL:AC073629 EMBL:AC079155
IPI:IPI00894461 RefSeq:NP_001094887.1 RefSeq:NP_001094896.1
UniGene:Hs.636502 ProteinModelPortal:A4D126 SMR:A4D126
STRING:A4D126 PhosphoSite:A4D126 PRIDE:A4D126
Ensembl:ENST00000399310 Ensembl:ENST00000407010 GeneID:729920
KEGG:hsa:729920 UCSC:uc010ktx.2 GeneCards:GC07M016098
HGNC:HGNC:37276 HPA:HPA043810 MIM:614631 MIM:614643
neXtProt:NX_A4D126 PharmGKB:PA165618128 InParanoid:A4D126
NextBio:131766 Bgee:A4D126 Genevestigator:A4D126 Uniprot:A4D126
Length = 451
Score = 162 (62.1 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 58/214 (27%), Positives = 102/214 (47%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PG 59
PKQ+ P+L +P+ Y+ R+ +K+IVV ++ + +K + SL G
Sbjct: 65 PKQFCPILERPLISYTLQALERVCWIKDIVVAVTGENMEVMKSIIQKYQ-HKRISLVEAG 123
Query: 60 KERQDSVYSGLQ---EVDFNS-----ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLG 111
R S+++GL+ E NS E+V IHD+ RP V + KV+ A GAA
Sbjct: 124 VTRHRSIFNGLKALAEDQINSKLSKPEVVIIHDAVRPFVEEGVLLKVVTAAKEHGAAGAI 183
Query: 112 VPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEV-TDDVSI 170
P +T+ +++ + +L+R + PQ D++ + ++ + LE T+ + +
Sbjct: 184 RPLVSTVVSPSADGCLDYSLERARHRASEMPQAFLFDVIYEAYQQCSDYDLEFGTECLQL 243
Query: 171 -VEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 203
+++ + EGS KVT DL AE I+
Sbjct: 244 ALKYCCTKAKLVEGSPDLWKVTYKRDLYAAESII 277
>UNIPROTKB|Q28CZ7 [details] [associations]
symbol:ispd "Isoprenoid synthase domain-containing protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0035269 "protein
O-linked mannosylation" evidence=ISS] InterPro:IPR001228
InterPro:IPR018294 Pfam:PF01128 PROSITE:PS01295 UniPathway:UPA00378
GO:GO:0016779 GO:GO:0008299 GO:GO:0035269 CTD:729920
GeneTree:ENSGT00390000006412 OMA:CYNFVCV HOGENOM:HOG000113111
HOVERGEN:HBG057782 OrthoDB:EOG4JT05H EMBL:CR855789 EMBL:CR926258
EMBL:AAMC01021497 EMBL:AAMC01021498 EMBL:AAMC01021499
EMBL:AAMC01021500 EMBL:AAMC01021501 EMBL:AAMC01021502
EMBL:AAMC01021503 EMBL:BC171103 RefSeq:NP_001016240.1
UniGene:Str.27457 ProteinModelPortal:Q28CZ7 STRING:Q28CZ7
Ensembl:ENSXETT00000049329 Ensembl:ENSXETT00000049330 GeneID:548994
KEGG:xtr:548994 Xenbase:XB-GENE-1014860 Uniprot:Q28CZ7
Length = 411
Score = 151 (58.2 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 55/217 (25%), Positives = 100/217 (46%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
PKQ+ +LG+P+ ++ F R +K+I+VV D+ + K + G E
Sbjct: 29 PKQFCTVLGRPLISHTLEAFERASWIKDIIVVVASESLDLMKAIIHKYGHQRVTLVKGGE 88
Query: 62 -RQDSVYSGLQEVDFNS---------ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLG 111
R S+++GL+ N E+V IHD+ RP V + +V A + GAA
Sbjct: 89 TRHRSIFNGLKVFSENHSDDTAIDKPEVVIIHDAVRPFVDEDFLLQVAKSAKQHGAAGAI 148
Query: 112 VPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEV-TDDVSI 170
P +T+ ++S+ F+ +L+R + PQ + D++ + + L+ T+ + +
Sbjct: 149 RPLVSTVIASSSDGFLDYSLERARHRASEMPQAFQYDVIYRAYLQCTDYDLDFGTECLHL 208
Query: 171 -VEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 206
+++ + EG KVT DL AE ++ S
Sbjct: 209 ALQYSNVKAKLLEGPPDLWKVTYKRDLYAAESVIKES 245
>UNIPROTKB|F1SEJ2 [details] [associations]
symbol:LOC100623666 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008299 "isoprenoid biosynthetic process"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR001228 InterPro:IPR018294 Pfam:PF01128 PROSITE:PS01295
GO:GO:0003824 GO:GO:0008299 GeneTree:ENSGT00390000006412
EMBL:FP102811 EMBL:FP090911 Ensembl:ENSSSCT00000016733 OMA:TDACKIL
Uniprot:F1SEJ2
Length = 286
Score = 147 (56.8 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 57/214 (26%), Positives = 98/214 (45%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PG 59
PKQ+ P+L +P+ Y+ R+ +K+IVV + + ++ + SL G
Sbjct: 65 PKQFCPILERPLISYTLQALERVCWIKDIVVAVTGENMEAMKGIIQRYQ-HKRISLVEAG 123
Query: 60 KERQDSVYSGLQ---EVDFNS-----ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLG 111
R S+++GL+ E NS E+V IHD+ RP V + +V+ A GA+
Sbjct: 124 VTRHRSIFNGLKALAEDQPNSRLSKPEVVIIHDAVRPFVEEDVLFQVVTAAKEYGASGAI 183
Query: 112 VPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEV-TDDVSI 170
P +T+ ++E + +L+R + PQ D++ + + + LE T+ + +
Sbjct: 184 RPLVSTVISPSTEGCLDYSLERARHRASEMPQAFLFDVIYEAYRQCSDHDLEFGTECLHL 243
Query: 171 VEHLKH-PVYITEGSYTNIKVTTPDDLLIAERIL 203
H + EGS KVT DL AE I+
Sbjct: 244 ALKYCHIKAKLVEGSPDLWKVTYKRDLYAAESII 277
>UNIPROTKB|E1BCH6 [details] [associations]
symbol:ISPD "Isoprenoid synthase domain-containing protein"
species:9913 "Bos taurus" [GO:0035269 "protein O-linked
mannosylation" evidence=ISS] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0008299 "isoprenoid biosynthetic
process" evidence=IEA] InterPro:IPR001228 InterPro:IPR018294
Pfam:PF01128 PROSITE:PS01295 UniPathway:UPA00378 GO:GO:0016779
GO:GO:0008299 GO:GO:0035269 EMBL:DAAA02010006 EMBL:DAAA02010007
EMBL:DAAA02010008 EMBL:DAAA02010009 EMBL:DAAA02010010
EMBL:DAAA02010011 EMBL:DAAA02010012 EMBL:DAAA02010013
EMBL:DAAA02010014 EMBL:DAAA02010015 EMBL:DAAA02010016
EMBL:DAAA02010017 EMBL:DAAA02010018 EMBL:DAAA02010019
EMBL:DAAA02010020 EMBL:DAAA02010021 EMBL:DAAA02010022
EMBL:DAAA02010023 IPI:IPI00713148 RefSeq:XP_002686725.1
ProteinModelPortal:E1BCH6 Ensembl:ENSBTAT00000020061
GeneID:100337328 KEGG:bta:100337328 CTD:729920
GeneTree:ENSGT00390000006412 OMA:CYNFVCV Uniprot:E1BCH6
Length = 445
Score = 149 (57.5 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 54/214 (25%), Positives = 98/214 (45%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PG 59
PKQ+ P+L +P+ Y+ R+ +K+I+V + + ++ + SL G
Sbjct: 65 PKQFCPILERPLISYTLQALERVSWIKDIIVAVTRENMETMKGIIQRYQ-HKRISLVEAG 123
Query: 60 KERQDSVYSGLQEVDFNS--------ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLG 111
R S+++GL+ + + E+V IHD+ RP V + KV+ A GA+
Sbjct: 124 VTRHRSIFNGLKALAEDQPNCRLSKPEVVIIHDAVRPFVEEDVLLKVVTAAQEHGASGAI 183
Query: 112 VPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEV-TDDVSI 170
P +T+ +++S + +L+R + PQ D++ ++ + LE T+ + +
Sbjct: 184 RPLVSTVISPSADSCLDHSLERARYRASEMPQAFLFDVIYDAYQQCSDYDLEFGTECLHL 243
Query: 171 VEHLKH-PVYITEGSYTNIKVTTPDDLLIAERIL 203
H + EGS KVT DL AE I+
Sbjct: 244 ALKYSHIKAKLVEGSPDLWKVTYKRDLYAAESII 277
>UNIPROTKB|J9NYK6 [details] [associations]
symbol:ISPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008299 "isoprenoid biosynthetic process"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR001228 InterPro:IPR018294 Pfam:PF01128 PROSITE:PS01295
GO:GO:0003824 GO:GO:0008299 CTD:729920 GeneTree:ENSGT00390000006412
OMA:CYNFVCV EMBL:AAEX03009349 EMBL:AAEX03009348
RefSeq:XP_003431914.1 Ensembl:ENSCAFT00000046360 GeneID:100687645
KEGG:cfa:100687645 Uniprot:J9NYK6
Length = 430
Score = 148 (57.2 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 56/214 (26%), Positives = 97/214 (45%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PG 59
PKQ+ P+L +P+ Y+ + +K+IVV + + +K + SL G
Sbjct: 45 PKQFCPVLERPLISYTLQALESVCWIKDIVVAVTGENMEAMKGIIQKYQHQ-RISLVAAG 103
Query: 60 KERQDSVYSGLQEVDFNS--------ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLG 111
R S+++GL+ + + E+V IHD+ RP V + KV+ A GAA
Sbjct: 104 VTRHRSIFNGLKALAEDQPDSKLSKPEVVIIHDAVRPFVEEDVLLKVVTAAKEHGAAGAI 163
Query: 112 VPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEV-TDDVSI 170
P +T+ +++ + +LDR + PQ D++ + ++ + LE T+ + +
Sbjct: 164 RPLVSTVISPSADGCLDHSLDRARHRASEMPQAFLFDVIYEAYQQCSDYDLEFGTECLQL 223
Query: 171 VEHLKHP-VYITEGSYTNIKVTTPDDLLIAERIL 203
H + EGS KVT DL AE I+
Sbjct: 224 ALKYGHVHAKLVEGSPDLWKVTYKRDLYAAESII 257
>RGD|1359368 [details] [associations]
symbol:Ispd "isoprenoid synthase domain containing"
species:10116 "Rattus norvegicus" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0008299 "isoprenoid biosynthetic process"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0035269 "protein O-linked mannosylation"
evidence=ISO;ISS] InterPro:IPR001228 InterPro:IPR018294
Pfam:PF01128 PROSITE:PS01295 UniPathway:UPA00378 RGD:1359368
GO:GO:0016779 GO:GO:0008299 GO:GO:0035269 eggNOG:COG1211 CTD:729920
GeneTree:ENSGT00390000006412 OMA:CYNFVCV HOVERGEN:HBG057782
OrthoDB:EOG4JT05H HSSP:Q9X1B3 EMBL:AY769991 EMBL:AY769992
IPI:IPI00214892 IPI:IPI00900490 RefSeq:NP_001008387.1
UniGene:Rn.119606 ProteinModelPortal:Q5S6T3 STRING:Q5S6T3
PRIDE:Q5S6T3 Ensembl:ENSRNOT00000008312 GeneID:493574
KEGG:rno:493574 UCSC:RGD:1359368 InParanoid:Q5S6T4 NextBio:697220
ArrayExpress:Q5S6T3 Genevestigator:Q5S6T3 Uniprot:Q5S6T3
Length = 447
Score = 145 (56.1 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 49/213 (23%), Positives = 99/213 (46%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-NVDLKFSLPGK 60
PKQ+ +L +P+ Y+ R+ +K+IVV + ++ + + + G
Sbjct: 63 PKQFCRVLERPLISYTLQAMERVCWIKDIVVTVTGENMEAMRSIIQRYGHKRISLAEAGA 122
Query: 61 ERQDSVYSGLQEVDFNS--------ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGV 112
R S+++GL+ + + E+V IHD+ RP V + +V++ A GAA
Sbjct: 123 TRHRSIFNGLKALAEDQPGCELTRPEVVIIHDAVRPFVEEDILLRVVLAAKEHGAAGAIR 182
Query: 113 PAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEV-TDDVSI- 170
P +T+ +++ + +LDR + PQ D++ + ++ + LE T+ + +
Sbjct: 183 PLVSTVVSPSADGHLDHSLDRAKHRASEMPQAFHFDVIYEAYQKCSDFDLEFGTECLQLA 242
Query: 171 VEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 203
+++ + EG+ KVT DL AE ++
Sbjct: 243 LKYCHRKAKLVEGTPDLWKVTYKQDLCAAEAMI 275
>UNIPROTKB|Q5S6T3 [details] [associations]
symbol:Ispd "Isoprenoid synthase domain-containing protein"
species:10116 "Rattus norvegicus" [GO:0008299 "isoprenoid
biosynthetic process" evidence=IEA] InterPro:IPR001228
InterPro:IPR018294 Pfam:PF01128 PROSITE:PS01295 UniPathway:UPA00378
RGD:1359368 GO:GO:0016779 GO:GO:0008299 GO:GO:0035269
eggNOG:COG1211 CTD:729920 GeneTree:ENSGT00390000006412 OMA:CYNFVCV
HOVERGEN:HBG057782 OrthoDB:EOG4JT05H HSSP:Q9X1B3 EMBL:AY769991
EMBL:AY769992 IPI:IPI00214892 IPI:IPI00900490 RefSeq:NP_001008387.1
UniGene:Rn.119606 ProteinModelPortal:Q5S6T3 STRING:Q5S6T3
PRIDE:Q5S6T3 Ensembl:ENSRNOT00000008312 GeneID:493574
KEGG:rno:493574 UCSC:RGD:1359368 InParanoid:Q5S6T4 NextBio:697220
ArrayExpress:Q5S6T3 Genevestigator:Q5S6T3 Uniprot:Q5S6T3
Length = 447
Score = 145 (56.1 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 49/213 (23%), Positives = 99/213 (46%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-NVDLKFSLPGK 60
PKQ+ +L +P+ Y+ R+ +K+IVV + ++ + + + G
Sbjct: 63 PKQFCRVLERPLISYTLQAMERVCWIKDIVVTVTGENMEAMRSIIQRYGHKRISLAEAGA 122
Query: 61 ERQDSVYSGLQEVDFNS--------ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGV 112
R S+++GL+ + + E+V IHD+ RP V + +V++ A GAA
Sbjct: 123 TRHRSIFNGLKALAEDQPGCELTRPEVVIIHDAVRPFVEEDILLRVVLAAKEHGAAGAIR 182
Query: 113 PAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEV-TDDVSI- 170
P +T+ +++ + +LDR + PQ D++ + ++ + LE T+ + +
Sbjct: 183 PLVSTVVSPSADGHLDHSLDRAKHRASEMPQAFHFDVIYEAYQKCSDFDLEFGTECLQLA 242
Query: 171 VEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 203
+++ + EG+ KVT DL AE ++
Sbjct: 243 LKYCHRKAKLVEGTPDLWKVTYKQDLCAAEAMI 275
>MGI|MGI:1923097 [details] [associations]
symbol:Ispd "isoprenoid synthase domain containing"
species:10090 "Mus musculus" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008299 "isoprenoid biosynthetic process" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0035269
"protein O-linked mannosylation" evidence=ISO] InterPro:IPR001228
InterPro:IPR018294 Pfam:PF01128 PROSITE:PS01295 UniPathway:UPA00378
MGI:MGI:1923097 GO:GO:0016779 GO:GO:0008299 GO:GO:0035269
eggNOG:COG1211 CTD:729920 GeneTree:ENSGT00390000006412 OMA:CYNFVCV
HOVERGEN:HBG057782 OrthoDB:EOG4JT05H EMBL:AK039004 EMBL:AK043122
EMBL:AK045940 EMBL:BC024061 EMBL:BC086665 EMBL:BC096030
EMBL:BC118038 IPI:IPI00319767 IPI:IPI00900429 IPI:IPI00900434
IPI:IPI00900443 IPI:IPI00900452 RefSeq:NP_848744.2
UniGene:Mm.261764 HSSP:Q9X1B3 ProteinModelPortal:Q5RJG7 SMR:Q5RJG7
STRING:Q5RJG7 PhosphoSite:Q5RJG7 PaxDb:Q5RJG7 PRIDE:Q5RJG7
Ensembl:ENSMUST00000062041 GeneID:75847 KEGG:mmu:75847
UCSC:uc007njy.2 UCSC:uc007njz.2 UCSC:uc007nkb.2 UCSC:uc007nkd.1
InParanoid:Q5RJG7 NextBio:344100 Bgee:Q5RJG7 Genevestigator:Q5RJG7
Uniprot:Q5RJG7
Length = 447
Score = 142 (55.0 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 49/213 (23%), Positives = 98/213 (46%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-NVDLKFSLPGK 60
PKQ+ +L +P+ Y+ R+ +K+IVV + ++ + + + G
Sbjct: 63 PKQFCRVLERPLISYTLQAMERVCWIKDIVVTVTGENMEAMRSIIQRYGHKRISLAEAGA 122
Query: 61 ERQDSVYSGLQEVDFNS--------ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGV 112
R S+++GL+ + + E+V IHD+ RP V + +V++ A GAA
Sbjct: 123 TRHRSIFNGLKALAEDQPDCKLTKPEVVIIHDAVRPFVEEDILLRVVLAAKEHGAAGAIR 182
Query: 113 PAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGLEV-TDDVSI- 170
P +T+ +++ + +LDR + PQ D++ + ++ + LE T+ + +
Sbjct: 183 PLVSTVISPSADGHLDHSLDRAKHRASEMPQAFLFDVIYEAYQQCSDFDLEFGTECLQLA 242
Query: 171 VEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 203
+++ + EG KVT DL AE ++
Sbjct: 243 LKYCHRKAKLVEGPPALWKVTYKQDLCAAEAMI 275
>GENEDB_PFALCIPARUM|PFA0340w [details] [associations]
symbol:PFA0340w "2-C-methyl-D-erythritol
4-phosphate cytidylyltransferase, putative" species:5833
"Plasmodium falciparum" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR001228 InterPro:IPR018294 Pfam:PF01128 PROSITE:PS01295
EMBL:AL844501 GO:GO:0008299 GO:GO:0050518 RefSeq:XP_001351000.1
HSSP:Q46893 ProteinModelPortal:Q8I273 EnsemblProtists:PFA0340w:mRNA
GeneID:813205 KEGG:pfa:PFA_0340w HOGENOM:HOG000212612
ProtClustDB:CLSZ2500524 Uniprot:Q8I273
Length = 734
Score = 88 (36.0 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK-----EANSES----FVVRT 130
+ IHD ARP + D ++ + +LG A TIK E N + F+ +T
Sbjct: 512 ILIHDGARPFLSEIDFFNLIYYSTLDKNVILGSKATDTIKLIQHEEENKKKTTSPFIKKT 571
Query: 131 LDRKTLWEMQTPQV 144
+DR T+++ QTPQ+
Sbjct: 572 IDRDTIFQAQTPQI 585
Score = 76 (31.8 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
PKQ+L L P+ +YSF F + +K + +VCD + F INV + L K
Sbjct: 214 PKQFLKLNDIPLFIYSFNLFIKCNLIKSLTLVCDKKH---FSCIIHSINVYNQLLLKRKM 270
Query: 62 RQDSVYSGLQEVDFN 76
+ +G +++ N
Sbjct: 271 INSFLKNGNDKLNIN 285
Score = 64 (27.6 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 163 EVTDDVSIVEHL----KHPVYITEGSYTNIKVTTPDDLL 197
+ TD S+ ++ K +++ + ++ N KVTTP+D+L
Sbjct: 632 QFTDTSSLYQYFNKSKKKKIFVLQSNFPNFKVTTPEDVL 670
Score = 47 (21.6 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 44 ETKEK-INVD----LKFSLPGKERQDSVYSGLQEVD 74
+ K+K INV+ LK GKER DS + ++ +D
Sbjct: 406 QIKQKHINVNRYKLLKIVESGKERLDSFLNAMKSID 441
>UNIPROTKB|Q8I273 [details] [associations]
symbol:PFA_0340w "2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase, putative" species:36329 "Plasmodium
falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR001228 InterPro:IPR018294 Pfam:PF01128 PROSITE:PS01295
EMBL:AL844501 GO:GO:0008299 GO:GO:0050518 RefSeq:XP_001351000.1
HSSP:Q46893 ProteinModelPortal:Q8I273 EnsemblProtists:PFA0340w:mRNA
GeneID:813205 KEGG:pfa:PFA_0340w HOGENOM:HOG000212612
ProtClustDB:CLSZ2500524 Uniprot:Q8I273
Length = 734
Score = 88 (36.0 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK-----EANSES----FVVRT 130
+ IHD ARP + D ++ + +LG A TIK E N + F+ +T
Sbjct: 512 ILIHDGARPFLSEIDFFNLIYYSTLDKNVILGSKATDTIKLIQHEEENKKKTTSPFIKKT 571
Query: 131 LDRKTLWEMQTPQV 144
+DR T+++ QTPQ+
Sbjct: 572 IDRDTIFQAQTPQI 585
Score = 76 (31.8 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE 61
PKQ+L L P+ +YSF F + +K + +VCD + F INV + L K
Sbjct: 214 PKQFLKLNDIPLFIYSFNLFIKCNLIKSLTLVCDKKH---FSCIIHSINVYNQLLLKRKM 270
Query: 62 RQDSVYSGLQEVDFN 76
+ +G +++ N
Sbjct: 271 INSFLKNGNDKLNIN 285
Score = 64 (27.6 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 163 EVTDDVSIVEHL----KHPVYITEGSYTNIKVTTPDDLL 197
+ TD S+ ++ K +++ + ++ N KVTTP+D+L
Sbjct: 632 QFTDTSSLYQYFNKSKKKKIFVLQSNFPNFKVTTPEDVL 670
Score = 47 (21.6 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 44 ETKEK-INVD----LKFSLPGKERQDSVYSGLQEVD 74
+ K+K INV+ LK GKER DS + ++ +D
Sbjct: 406 QIKQKHINVNRYKLLKIVESGKERLDSFLNAMKSID 441
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 210 210 0.00080 112 3 11 22 0.39 33
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 585 (62 KB)
Total size of DFA: 153 KB (2093 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.84u 0.11s 18.95t Elapsed: 00:00:01
Total cpu time: 18.84u 0.11s 18.95t Elapsed: 00:00:01
Start: Fri May 10 14:10:15 2013 End: Fri May 10 14:10:16 2013