Query 028320
Match_columns 210
No_of_seqs 113 out of 1189
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:40:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01128 IspD: 2-C-methyl-D-er 100.0 3.5E-43 7.7E-48 274.0 19.2 203 1-205 18-221 (221)
2 COG1211 IspD 4-diphosphocytidy 100.0 4.7E-40 1E-44 255.4 21.5 205 1-205 22-228 (230)
3 PLN02728 2-C-methyl-D-erythrit 100.0 1.2E-38 2.6E-43 254.0 22.5 207 1-207 42-248 (252)
4 PRK13385 2-C-methyl-D-erythrit 100.0 7.1E-36 1.5E-40 236.4 22.5 207 1-209 20-229 (230)
5 PRK00155 ispD 2-C-methyl-D-ery 100.0 1.2E-33 2.5E-38 223.2 23.4 207 1-208 21-227 (227)
6 TIGR00453 ispD 2-C-methyl-D-er 100.0 2E-32 4.3E-37 214.8 23.2 201 1-203 17-217 (217)
7 cd02516 CDP-ME_synthetase CDP- 100.0 9.4E-32 2E-36 210.9 21.5 198 1-199 18-218 (218)
8 PRK09382 ispDF bifunctional 2- 100.0 5.3E-31 1.2E-35 220.7 21.6 192 1-205 23-214 (378)
9 TIGR00466 kdsB 3-deoxy-D-manno 99.9 3.1E-24 6.8E-29 170.5 17.1 189 2-197 15-238 (238)
10 COG1212 KdsB CMP-2-keto-3-deox 99.9 8.1E-24 1.8E-28 161.0 16.9 197 2-206 19-245 (247)
11 TIGR03584 PseF pseudaminic aci 99.9 1.7E-23 3.7E-28 164.5 16.7 190 2-204 15-221 (222)
12 COG1083 NeuA CMP-N-acetylneura 99.9 5.9E-24 1.3E-28 160.6 13.0 194 2-208 19-227 (228)
13 COG1207 GlmU N-acetylglucosami 99.9 4.1E-22 9E-27 164.3 16.7 205 1-208 20-247 (460)
14 cd02513 CMP-NeuAc_Synthase CMP 99.9 2.4E-22 5.1E-27 157.9 13.5 188 2-203 17-223 (223)
15 PLN02917 CMP-KDO synthetase 99.9 3E-21 6.5E-26 157.4 18.2 199 2-209 63-293 (293)
16 COG2068 Uncharacterized MobA-r 99.9 5.5E-21 1.2E-25 144.4 16.5 176 1-204 21-198 (199)
17 PRK13368 3-deoxy-manno-octulos 99.8 5E-19 1.1E-23 140.5 18.9 196 2-203 18-238 (238)
18 cd02517 CMP-KDO-Synthetase CMP 99.8 2E-18 4.3E-23 137.2 19.9 197 2-202 17-239 (239)
19 cd02540 GT2_GlmU_N_bac N-termi 99.8 1.9E-18 4.2E-23 136.2 17.3 194 1-196 16-229 (229)
20 cd04182 GT_2_like_f GT_2_like_ 99.8 1.1E-17 2.3E-22 127.6 16.9 168 2-197 17-186 (186)
21 PRK05450 3-deoxy-manno-octulos 99.8 3.5E-17 7.6E-22 130.5 19.7 197 2-203 18-244 (245)
22 cd02518 GT2_SpsF SpsF is a gly 99.8 1.6E-17 3.6E-22 131.5 16.7 175 2-205 15-204 (233)
23 TIGR03310 matur_ygfJ molybdenu 99.8 1.9E-17 4.2E-22 126.7 15.3 170 1-198 15-187 (188)
24 PRK14354 glmU bifunctional N-a 99.8 3.7E-17 8E-22 141.5 18.4 200 1-205 20-241 (458)
25 PRK14356 glmU bifunctional N-a 99.8 2.7E-17 5.9E-22 142.3 16.8 204 1-206 23-246 (456)
26 PRK00317 mobA molybdopterin-gu 99.8 1.1E-16 2.3E-21 123.4 17.7 168 1-202 20-192 (193)
27 PRK14353 glmU bifunctional N-a 99.8 4.4E-17 9.5E-22 140.6 16.9 204 1-206 23-245 (446)
28 TIGR03202 pucB xanthine dehydr 99.8 7.7E-17 1.7E-21 123.8 16.1 168 2-196 17-190 (190)
29 TIGR02665 molyb_mobA molybdopt 99.7 1.5E-16 3.2E-21 121.7 16.7 165 1-197 17-186 (186)
30 PRK14359 glmU bifunctional N-a 99.7 7.8E-17 1.7E-21 138.4 16.1 197 1-206 20-236 (430)
31 TIGR01173 glmU UDP-N-acetylglu 99.7 2E-16 4.4E-21 136.6 18.7 202 1-205 18-237 (451)
32 PRK14360 glmU bifunctional N-a 99.7 8.6E-17 1.9E-21 138.9 15.9 200 1-205 19-238 (450)
33 cd02503 MobA MobA catalyzes th 99.7 3.5E-16 7.6E-21 119.1 16.4 92 2-102 17-109 (181)
34 PRK14352 glmU bifunctional N-a 99.7 5.1E-16 1.1E-20 135.3 17.5 194 1-196 22-236 (482)
35 PRK02726 molybdopterin-guanine 99.7 1.4E-15 3.1E-20 117.8 17.3 168 2-202 24-197 (200)
36 PRK14355 glmU bifunctional N-a 99.7 5.1E-15 1.1E-19 128.3 18.6 202 1-205 21-244 (459)
37 COG1209 RfbA dTDP-glucose pyro 99.7 3.5E-15 7.6E-20 117.3 15.0 199 1-205 21-237 (286)
38 COG2266 GTP:adenosylcobinamide 99.7 2.4E-15 5.2E-20 111.0 12.4 95 2-103 18-112 (177)
39 PRK14489 putative bifunctional 99.7 9.1E-15 2E-19 123.1 17.3 170 1-203 22-197 (366)
40 COG1861 SpsF Spore coat polysa 99.6 3.1E-14 6.7E-19 108.6 14.9 177 2-205 19-206 (241)
41 cd06915 NTP_transferase_WcbM_l 99.6 3.5E-14 7.7E-19 111.2 15.5 187 1-199 19-222 (223)
42 PRK14358 glmU bifunctional N-a 99.6 3.2E-14 6.8E-19 123.9 15.6 201 1-206 25-247 (481)
43 PRK14490 putative bifunctional 99.6 9.6E-14 2.1E-18 117.1 17.8 174 2-207 191-367 (369)
44 TIGR01208 rmlA_long glucose-1- 99.6 1.3E-13 2.8E-18 115.7 18.1 201 1-207 20-238 (353)
45 PRK00560 molybdopterin-guanine 99.6 3.4E-14 7.3E-19 109.8 13.5 166 1-206 24-194 (196)
46 TIGR01207 rmlA glucose-1-phosp 99.6 1.3E-13 2.7E-18 112.4 17.5 197 1-204 20-237 (286)
47 cd02538 G1P_TT_short G1P_TT_sh 99.6 2.3E-13 4.9E-18 108.3 18.3 200 1-205 21-239 (240)
48 PRK00576 molybdopterin-guanine 99.6 2.4E-13 5.2E-18 103.4 16.4 165 1-199 3-173 (178)
49 PRK14357 glmU bifunctional N-a 99.6 1.7E-13 3.6E-18 118.5 16.4 192 1-205 18-231 (448)
50 PRK15480 glucose-1-phosphate t 99.6 4.7E-13 1E-17 109.3 18.0 198 1-204 24-241 (292)
51 PF12804 NTP_transf_3: MobA-li 99.6 1.3E-13 2.8E-18 102.8 13.2 103 2-109 15-118 (160)
52 cd04189 G1P_TT_long G1P_TT_lon 99.6 5.4E-13 1.2E-17 105.7 17.2 195 1-204 21-234 (236)
53 PF02348 CTP_transf_3: Cytidyl 99.5 4.4E-14 9.5E-19 110.6 10.7 103 2-107 15-119 (217)
54 PRK09451 glmU bifunctional N-a 99.5 4E-13 8.6E-18 116.4 16.7 195 1-200 23-242 (456)
55 COG0746 MobA Molybdopterin-gua 99.5 2.8E-12 6.1E-17 98.4 17.2 170 1-202 19-191 (192)
56 cd06422 NTP_transferase_like_1 99.5 1E-12 2.2E-17 103.2 15.2 188 1-199 20-221 (221)
57 TIGR03552 F420_cofC 2-phospho- 99.5 1.8E-13 3.9E-18 105.5 10.3 91 11-106 30-120 (195)
58 cd02524 G1P_cytidylyltransfera 99.5 2.6E-12 5.7E-17 103.0 17.1 199 1-208 19-250 (253)
59 TIGR00454 conserved hypothetic 99.5 8.1E-13 1.8E-17 100.9 13.4 102 1-106 17-118 (183)
60 TIGR02623 G1P_cyt_trans glucos 99.5 8.1E-12 1.8E-16 100.3 17.6 196 1-208 20-249 (254)
61 PF00483 NTP_transferase: Nucl 99.4 2.2E-12 4.8E-17 102.8 13.4 201 1-205 20-247 (248)
62 TIGR01105 galF UTP-glucose-1-p 99.4 6.5E-12 1.4E-16 102.8 16.4 196 1-203 24-276 (297)
63 cd02541 UGPase_prokaryotic Pro 99.4 6E-12 1.3E-16 101.6 15.8 198 1-204 21-265 (267)
64 PRK14500 putative bifunctional 99.4 4.8E-12 1E-16 105.3 15.1 94 2-103 177-271 (346)
65 cd02523 PC_cytidylyltransferas 99.4 1.1E-11 2.3E-16 97.9 16.3 93 1-99 19-114 (229)
66 COG1208 GCD1 Nucleoside-diphos 99.4 3.2E-11 6.9E-16 101.3 18.3 197 1-207 22-238 (358)
67 TIGR01099 galU UTP-glucose-1-p 99.4 2.2E-11 4.7E-16 98.0 15.8 193 1-198 21-259 (260)
68 PRK05293 glgC glucose-1-phosph 99.4 3E-11 6.5E-16 102.4 17.1 200 1-204 24-258 (380)
69 cd06426 NTP_transferase_like_2 99.4 1.9E-11 4.2E-16 95.7 14.4 188 1-200 19-220 (220)
70 PRK13389 UTP--glucose-1-phosph 99.4 6.9E-11 1.5E-15 97.1 17.8 197 1-203 29-279 (302)
71 cd06425 M1P_guanylylT_B_like_N 99.4 5.7E-11 1.2E-15 94.0 16.7 194 1-203 21-232 (233)
72 cd06428 M1P_guanylylT_A_like_N 99.4 7.5E-11 1.6E-15 94.8 17.6 198 1-203 21-257 (257)
73 TIGR02092 glgD glucose-1-phosp 99.4 3.3E-11 7.2E-16 101.7 15.6 200 1-204 23-254 (369)
74 COG1213 Predicted sugar nucleo 99.4 1.8E-11 3.9E-16 94.8 12.6 194 1-205 21-230 (239)
75 PRK10122 GalU regulator GalF; 99.3 1.4E-10 3E-15 95.1 17.3 195 1-204 24-277 (297)
76 cd04183 GT2_BcE_like GT2_BcbE_ 99.3 8.5E-11 1.8E-15 92.8 15.3 193 1-197 19-231 (231)
77 PRK00844 glgC glucose-1-phosph 99.3 9.7E-11 2.1E-15 100.2 16.1 199 1-204 26-276 (407)
78 cd02508 ADP_Glucose_PP ADP-glu 99.3 1.8E-10 3.8E-15 89.2 13.2 105 1-109 19-141 (200)
79 PRK02862 glgC glucose-1-phosph 99.3 2.3E-10 4.9E-15 98.5 14.9 197 1-204 24-273 (429)
80 TIGR02091 glgC glucose-1-phosp 99.2 4.7E-10 1E-14 94.4 15.3 200 1-205 19-259 (361)
81 PRK00725 glgC glucose-1-phosph 99.2 1.1E-09 2.5E-14 94.1 17.8 199 1-204 36-287 (425)
82 cd04181 NTP_transferase NTP_tr 99.2 9.3E-10 2E-14 85.7 15.8 125 1-131 19-154 (217)
83 PLN02241 glucose-1-phosphate a 99.2 7.5E-10 1.6E-14 95.5 15.7 201 1-205 24-282 (436)
84 cd04198 eIF-2B_gamma_N The N-t 99.1 1E-09 2.2E-14 85.9 10.5 104 1-110 21-132 (214)
85 cd02509 GDP-M1P_Guanylyltransf 99.1 2.7E-09 5.8E-14 86.6 11.7 102 1-102 22-128 (274)
86 KOG1322 GDP-mannose pyrophosph 98.9 9.8E-08 2.1E-12 77.3 16.3 196 1-205 30-245 (371)
87 TIGR01479 GMP_PMI mannose-1-ph 98.9 8.2E-08 1.8E-12 83.5 16.3 101 1-102 22-129 (468)
88 COG1210 GalU UDP-glucose pyrop 98.8 3.9E-07 8.4E-12 72.4 15.6 193 1-204 25-270 (291)
89 cd04197 eIF-2B_epsilon_N The N 98.8 6.8E-08 1.5E-12 75.7 10.9 97 1-104 21-129 (217)
90 PF01983 CofC: Guanylyl transf 98.8 3.5E-08 7.7E-13 76.8 8.4 147 12-200 32-183 (217)
91 cd02507 eIF-2B_gamma_N_like Th 98.7 1.8E-07 3.9E-12 73.3 9.4 94 1-101 21-125 (216)
92 COG1920 Predicted nucleotidylt 98.6 1.3E-06 2.9E-11 65.6 12.6 149 12-200 32-181 (210)
93 COG4750 LicC CTP:phosphocholin 98.5 4.1E-07 9E-12 68.4 6.3 82 1-88 21-104 (231)
94 KOG1462 Translation initiation 98.3 5.5E-07 1.2E-11 74.4 3.6 101 1-107 30-140 (433)
95 PRK15460 cpsB mannose-1-phosph 98.1 1.8E-05 3.9E-10 68.9 9.7 101 1-102 27-135 (478)
96 COG0836 {ManC} Mannose-1-phosp 98.1 2.4E-05 5.1E-10 63.7 9.3 103 1-103 23-132 (333)
97 KOG1460 GDP-mannose pyrophosph 97.9 1.5E-05 3.1E-10 64.2 4.5 107 1-109 25-137 (407)
98 KOG1461 Translation initiation 97.0 0.0044 9.6E-08 54.8 8.9 96 1-103 45-150 (673)
99 COG0448 GlgC ADP-glucose pyrop 96.9 0.036 7.8E-07 46.8 13.2 197 1-203 26-260 (393)
100 PF09837 DUF2064: Uncharacteri 96.9 0.012 2.6E-07 41.8 8.7 91 17-109 1-92 (122)
101 cd02511 Beta4Glucosyltransfera 96.1 0.17 3.6E-06 39.7 12.0 92 8-106 9-100 (229)
102 cd06435 CESA_NdvC_like NdvC_li 96.0 0.2 4.3E-06 39.1 11.8 94 13-107 13-114 (236)
103 cd00761 Glyco_tranf_GTA_type G 95.9 0.24 5.1E-06 34.8 10.9 92 8-103 6-103 (156)
104 cd04195 GT2_AmsE_like GT2_AmsE 95.7 0.45 9.7E-06 36.0 12.5 89 13-106 14-109 (201)
105 cd06439 CESA_like_1 CESA_like_ 95.7 0.23 5E-06 39.1 11.0 94 9-106 39-138 (251)
106 cd06438 EpsO_like EpsO protein 95.5 0.69 1.5E-05 34.6 12.5 96 8-105 6-109 (183)
107 PRK13915 putative glucosyl-3-p 95.1 0.5 1.1E-05 39.0 11.3 94 8-104 40-143 (306)
108 cd06421 CESA_CelA_like CESA_Ce 95.0 0.81 1.8E-05 35.3 12.1 95 6-104 7-111 (234)
109 cd04179 DPM_DPG-synthase_like 95.0 0.32 6.9E-06 36.1 9.4 93 11-107 9-109 (185)
110 cd06434 GT2_HAS Hyaluronan syn 94.9 0.51 1.1E-05 36.6 10.6 91 8-104 9-104 (235)
111 cd06423 CESA_like CESA_like is 94.8 0.73 1.6E-05 33.1 10.7 94 9-106 7-107 (180)
112 cd04186 GT_2_like_c Subfamily 94.8 0.63 1.4E-05 33.5 10.3 95 8-106 6-103 (166)
113 cd04184 GT2_RfbC_Mx_like Myxoc 94.7 1.1 2.4E-05 33.7 11.9 94 8-104 10-110 (202)
114 cd04192 GT_2_like_e Subfamily 94.7 0.94 2E-05 34.7 11.5 95 9-107 7-112 (229)
115 PRK11204 N-glycosyltransferase 94.6 0.74 1.6E-05 39.5 11.7 94 8-106 63-163 (420)
116 PF00535 Glycos_transf_2: Glyc 94.6 0.32 6.9E-06 35.0 8.3 97 8-108 7-109 (169)
117 cd04180 UGPase_euk_like Eukary 94.6 0.032 6.8E-07 45.2 3.0 94 1-95 18-153 (266)
118 PRK11498 bcsA cellulose syntha 94.1 1.6 3.5E-05 41.1 13.4 97 5-105 265-367 (852)
119 cd04187 DPM1_like_bac Bacteria 94.0 1.9 4.1E-05 32.0 11.5 91 10-104 8-107 (181)
120 cd06442 DPM1_like DPM1_like re 93.9 1.5 3.1E-05 33.7 11.1 94 8-106 6-107 (224)
121 cd02525 Succinoglycan_BP_ExoA 93.7 1.5 3.3E-05 34.1 10.9 95 9-107 10-111 (249)
122 COG3222 Uncharacterized protei 93.6 2.4 5.3E-05 32.1 12.8 161 12-204 38-205 (211)
123 PF10111 Glyco_tranf_2_2: Glyc 93.6 2 4.3E-05 34.9 11.7 69 42-113 52-127 (281)
124 PRK10714 undecaprenyl phosphat 93.6 2.4 5.2E-05 35.3 12.4 92 9-104 16-117 (325)
125 cd04185 GT_2_like_b Subfamily 93.5 1.8 4E-05 32.6 10.9 95 8-104 6-106 (202)
126 cd02522 GT_2_like_a GT_2_like_ 93.5 2.3 5E-05 32.4 11.6 93 9-107 9-102 (221)
127 PLN02726 dolichyl-phosphate be 93.5 1.7 3.8E-05 34.1 11.0 95 9-107 19-123 (243)
128 TIGR03111 glyc2_xrt_Gpos1 puta 93.4 2.8 6.1E-05 36.4 13.0 95 8-106 58-160 (439)
129 cd02510 pp-GalNAc-T pp-GalNAc- 93.2 2.2 4.7E-05 34.8 11.5 96 9-108 8-114 (299)
130 PRK14583 hmsR N-glycosyltransf 93.1 2.3 4.9E-05 37.0 12.1 93 9-105 85-183 (444)
131 cd06436 GlcNAc-1-P_transferase 93.0 2.8 6E-05 31.7 11.2 94 8-103 6-115 (191)
132 COG1215 Glycosyltransferases, 92.6 1.7 3.8E-05 37.2 10.6 96 9-108 64-168 (439)
133 cd06427 CESA_like_2 CESA_like_ 92.2 4.6 9.9E-05 31.6 12.3 93 9-105 11-112 (241)
134 TIGR03469 HonB hopene-associat 91.8 3.4 7.4E-05 35.1 11.3 98 8-107 49-163 (384)
135 cd02520 Glucosylceramide_synth 91.4 4.9 0.00011 30.3 11.5 95 9-106 11-115 (196)
136 COG1216 Predicted glycosyltran 91.3 3.2 6.8E-05 34.1 10.3 104 5-109 9-116 (305)
137 cd04196 GT_2_like_d Subfamily 90.9 5 0.00011 30.2 10.5 95 8-105 7-107 (214)
138 TIGR03472 HpnI hopanoid biosyn 90.9 6.2 0.00013 33.4 11.9 96 9-107 51-156 (373)
139 cd02526 GT2_RfbF_like RfbF is 90.8 5.4 0.00012 30.8 10.8 88 7-99 5-97 (237)
140 TIGR03030 CelA cellulose synth 90.7 6.2 0.00013 36.7 12.5 98 5-105 136-256 (713)
141 PF13704 Glyco_tranf_2_4: Glyc 90.2 2.2 4.9E-05 28.3 7.1 82 10-93 3-88 (97)
142 PRK10073 putative glycosyl tra 90.2 8.2 0.00018 32.1 11.8 97 9-109 16-117 (328)
143 KOG2978 Dolichol-phosphate man 90.2 5.2 0.00011 30.7 9.4 95 9-106 16-117 (238)
144 cd04188 DPG_synthase DPG_synth 90.2 6.8 0.00015 29.8 10.9 95 9-107 7-112 (211)
145 PTZ00260 dolichyl-phosphate be 90.0 5.8 0.00013 33.1 10.8 93 8-104 79-189 (333)
146 cd06420 GT2_Chondriotin_Pol_N 89.9 6.2 0.00014 29.0 11.7 90 9-102 7-104 (182)
147 cd06913 beta3GnTL1_like Beta 1 88.8 8 0.00017 29.6 10.3 98 8-109 6-116 (219)
148 cd06437 CESA_CaSu_A2 Cellulose 87.8 11 0.00024 29.1 10.8 94 8-104 10-114 (232)
149 cd06433 GT_2_WfgS_like WfgS an 87.1 10 0.00022 28.0 10.9 93 8-104 7-102 (202)
150 TIGR01556 rhamnosyltran L-rham 86.9 14 0.00031 29.6 11.0 90 12-105 8-101 (281)
151 PRK05454 glucosyltransferase M 86.4 27 0.00058 32.5 13.4 99 5-105 129-248 (691)
152 PTZ00339 UDP-N-acetylglucosami 85.1 1.7 3.7E-05 38.3 4.9 97 1-100 124-277 (482)
153 PF13641 Glyco_tranf_2_3: Glyc 84.9 3.7 8E-05 31.6 6.4 96 9-107 11-116 (228)
154 cd04193 UDPGlcNAc_PPase UDPGlc 84.7 1.3 2.8E-05 37.0 3.8 97 1-100 33-183 (323)
155 PF10087 DUF2325: Uncharacteri 82.9 12 0.00025 25.1 8.4 74 30-109 2-78 (97)
156 PF09258 Glyco_transf_64: Glyc 75.7 6.4 0.00014 31.5 4.9 96 9-107 10-105 (247)
157 PF01053 Cys_Met_Meta_PP: Cys/ 72.7 44 0.00096 28.6 9.5 87 13-106 82-170 (386)
158 PRK10063 putative glycosyl tra 72.5 44 0.00095 26.5 9.1 79 8-89 10-95 (248)
159 cd04191 Glucan_BSP_ModH Glucan 72.0 49 0.0011 26.4 12.6 99 5-105 4-123 (254)
160 PRK10018 putative glycosyl tra 71.5 54 0.0012 26.7 11.8 94 8-104 14-112 (279)
161 COG0626 MetC Cystathionine bet 71.0 66 0.0014 27.8 10.1 92 10-107 87-180 (396)
162 TIGR00288 conserved hypothetic 70.1 22 0.00047 26.5 6.2 56 14-69 91-148 (160)
163 TIGR00236 wecB UDP-N-acetylglu 69.5 35 0.00075 28.5 8.3 82 4-87 3-96 (365)
164 PF00670 AdoHcyase_NAD: S-aden 69.4 20 0.00044 26.8 5.9 72 27-98 22-100 (162)
165 PRK14716 bacteriophage N4 adso 68.9 76 0.0017 28.3 10.4 94 8-102 75-183 (504)
166 TIGR00334 5S_RNA_mat_M5 ribonu 68.4 15 0.00032 27.8 5.0 69 27-102 2-70 (174)
167 PF13506 Glyco_transf_21: Glyc 67.2 26 0.00056 26.3 6.3 50 63-114 19-69 (175)
168 TIGR00639 PurN phosphoribosylg 65.4 59 0.0013 24.8 9.6 88 7-98 7-100 (190)
169 PRK09028 cystathionine beta-ly 65.0 91 0.002 26.8 10.3 92 9-107 84-177 (394)
170 PRK05967 cystathionine beta-ly 64.6 93 0.002 26.8 11.1 92 9-107 87-180 (395)
171 cd02514 GT13_GLCNAC-TI GT13_GL 64.4 86 0.0019 26.4 11.9 103 5-109 5-132 (334)
172 COG0463 WcaA Glycosyltransfera 63.8 52 0.0011 23.6 8.1 85 8-96 12-102 (291)
173 cd06167 LabA_like LabA_like pr 61.0 52 0.0011 23.5 6.9 43 13-56 87-129 (149)
174 PRK05647 purN phosphoribosylgl 56.6 90 0.0019 24.0 8.2 87 7-97 8-100 (200)
175 COG1432 Uncharacterized conser 56.4 53 0.0011 24.9 6.3 33 26-58 110-142 (181)
176 COG0381 WecB UDP-N-acetylgluco 55.5 65 0.0014 27.6 7.2 83 4-87 6-102 (383)
177 PRK07811 cystathionine gamma-s 53.7 1.3E+02 0.0029 25.6 9.0 93 8-107 83-177 (388)
178 COG2179 Predicted hydrolase of 52.4 53 0.0012 24.7 5.5 66 19-89 56-121 (175)
179 COG0552 FtsY Signal recognitio 52.4 1.4E+02 0.0031 25.1 8.7 86 12-99 154-244 (340)
180 PRK08114 cystathionine beta-ly 51.3 1.6E+02 0.0035 25.4 9.3 90 10-106 86-177 (395)
181 COG0079 HisC Histidinol-phosph 50.1 1.6E+02 0.0034 24.9 9.2 88 10-104 84-176 (356)
182 TIGR02990 ectoine_eutA ectoine 49.9 1.2E+02 0.0027 24.1 7.7 37 16-53 110-148 (239)
183 PRK04017 hypothetical protein; 49.7 89 0.0019 22.5 6.2 77 14-101 9-87 (132)
184 PF02350 Epimerase_2: UDP-N-ac 48.2 1E+02 0.0022 25.9 7.4 77 20-101 2-87 (346)
185 PRK11234 nfrB bacteriophage N4 46.1 1.1E+02 0.0024 28.7 7.8 94 8-103 72-180 (727)
186 cd04190 Chitin_synth_C C-termi 45.7 1.4E+02 0.0031 23.2 8.7 29 76-105 73-101 (244)
187 TIGR00454 conserved hypothetic 45.5 9.4 0.0002 28.9 0.7 18 185-202 166-183 (183)
188 PF01936 NYN: NYN domain; Int 45.5 65 0.0014 22.6 5.2 42 14-56 84-125 (146)
189 COG0299 PurN Folate-dependent 44.8 1.5E+02 0.0032 23.0 9.6 87 9-99 9-101 (200)
190 PRK05968 hypothetical protein; 44.0 2E+02 0.0044 24.5 11.5 92 8-107 85-178 (389)
191 TIGR00177 molyb_syn molybdenum 42.1 95 0.0021 22.3 5.6 57 41-101 31-90 (144)
192 PF04028 DUF374: Domain of unk 41.6 93 0.002 19.9 6.9 56 31-88 14-69 (74)
193 PRK07050 cystathionine beta-ly 40.8 2.3E+02 0.005 24.2 11.3 93 8-107 87-181 (394)
194 COG0499 SAM1 S-adenosylhomocys 40.4 1.5E+02 0.0032 25.5 6.9 73 27-99 208-287 (420)
195 KOG2792 Putative cytochrome C 40.0 76 0.0016 25.7 5.0 57 14-70 162-222 (280)
196 COG1454 EutG Alcohol dehydroge 39.8 2.1E+02 0.0045 24.6 7.9 87 8-95 11-105 (377)
197 PF02548 Pantoate_transf: Keto 39.2 66 0.0014 26.0 4.6 86 17-107 7-109 (261)
198 COG4019 Uncharacterized protei 38.6 55 0.0012 23.4 3.6 55 27-81 36-98 (156)
199 COG1465 Predicted alternative 38.0 2.2E+02 0.0048 23.7 7.3 91 6-106 101-193 (376)
200 PF13723 Ketoacyl-synt_2: Beta 37.9 2E+02 0.0043 22.6 8.0 66 25-90 50-145 (218)
201 PRK07582 cystathionine gamma-l 37.8 2.5E+02 0.0054 23.7 9.3 91 7-107 71-163 (366)
202 TIGR01670 YrbI-phosphatas 3-de 37.6 1.6E+02 0.0034 21.3 7.3 55 16-74 35-89 (154)
203 PRK09484 3-deoxy-D-manno-octul 37.5 1.7E+02 0.0038 21.8 7.0 55 16-74 55-109 (183)
204 TIGR02638 lactal_redase lactal 36.9 2.6E+02 0.0057 23.7 8.5 81 8-89 11-99 (379)
205 COG1597 LCB5 Sphingosine kinas 36.7 1.6E+02 0.0035 24.2 6.8 63 11-74 19-82 (301)
206 TIGR02371 ala_DH_arch alanine 36.5 2.5E+02 0.0054 23.3 8.0 82 3-95 129-212 (325)
207 PRK05613 O-acetylhomoserine am 36.0 2.9E+02 0.0063 24.1 8.5 92 9-107 92-186 (437)
208 PRK08247 cystathionine gamma-s 35.7 2.7E+02 0.0058 23.4 11.4 91 9-107 75-167 (366)
209 PRK07810 O-succinylhomoserine 34.5 3E+02 0.0065 23.6 10.2 95 6-107 90-186 (403)
210 COG2121 Uncharacterized protei 34.2 1.8E+02 0.004 22.7 6.1 76 28-107 68-147 (214)
211 TIGR00285 DNA-binding protein 34.0 1.1E+02 0.0023 20.3 4.2 35 5-39 3-38 (87)
212 PF15647 Tox-REase-3: Restrict 33.9 65 0.0014 21.9 3.2 51 2-54 54-104 (109)
213 PLN02618 tryptophan synthase, 33.6 1.3E+02 0.0028 26.2 5.8 75 19-99 330-406 (410)
214 TIGR02764 spore_ybaN_pdaB poly 33.4 2.1E+02 0.0045 21.4 10.6 70 40-110 110-185 (191)
215 TIGR01328 met_gam_lyase methio 32.8 3.1E+02 0.0068 23.3 9.0 92 9-107 82-175 (391)
216 PRK05939 hypothetical protein; 32.6 3.2E+02 0.0069 23.4 11.0 92 9-107 70-162 (397)
217 TIGR03568 NeuC_NnaA UDP-N-acet 32.1 2.9E+02 0.0062 23.3 7.7 34 5-38 4-40 (365)
218 PF09419 PGP_phosphatase: Mito 32.0 2.1E+02 0.0046 21.4 6.1 40 14-53 64-109 (168)
219 PRK08776 cystathionine gamma-s 31.3 3.4E+02 0.0074 23.3 10.6 96 5-107 79-176 (405)
220 PRK08248 O-acetylhomoserine am 31.3 3.5E+02 0.0076 23.5 10.4 95 6-107 84-180 (431)
221 COG4378 Uncharacterized protei 31.3 1.7E+02 0.0036 19.7 5.9 70 32-109 4-74 (103)
222 PRK09432 metF 5,10-methylenete 30.8 87 0.0019 25.8 4.2 91 12-107 97-203 (296)
223 PRK14719 bifunctional RNAse/5- 30.7 1E+02 0.0022 26.2 4.7 51 2-54 44-99 (360)
224 KOG1370 S-adenosylhomocysteine 30.7 3E+02 0.0064 23.2 7.1 70 28-99 214-292 (434)
225 PRK08249 cystathionine gamma-s 30.4 3.5E+02 0.0076 23.2 9.4 93 8-107 86-180 (398)
226 KOG2547 Ceramide glucosyltrans 30.1 1.4E+02 0.0031 25.6 5.3 91 11-104 97-197 (431)
227 PRK08134 O-acetylhomoserine am 29.9 3.7E+02 0.0081 23.4 9.5 91 10-107 88-180 (433)
228 PF00583 Acetyltransf_1: Acety 29.5 74 0.0016 19.5 3.0 39 10-50 43-81 (83)
229 PF00702 Hydrolase: haloacid d 28.9 2.2E+02 0.0048 21.1 6.1 35 14-51 132-166 (215)
230 PRK06823 ornithine cyclodeamin 28.7 3.4E+02 0.0074 22.5 8.0 82 3-95 129-212 (315)
231 PRK07589 ornithine cyclodeamin 27.6 3.8E+02 0.0082 22.7 8.1 82 3-95 130-215 (346)
232 PHA00673 acetyltransferase dom 27.1 61 0.0013 24.0 2.4 28 10-38 103-130 (154)
233 PF10137 TIR-like: Predicted n 26.0 2E+02 0.0044 20.4 4.9 29 78-108 26-54 (125)
234 PLN02494 adenosylhomocysteinas 25.8 2.1E+02 0.0045 25.5 5.8 69 28-97 254-330 (477)
235 cd00758 MoCF_BD MoCF_BD: molyb 25.4 1.8E+02 0.0039 20.4 4.7 60 41-101 23-82 (133)
236 PRK13770 histidinol dehydrogen 25.2 2.7E+02 0.0058 24.3 6.2 44 12-55 124-172 (416)
237 PF00107 ADH_zinc_N: Zinc-bind 25.2 2.3E+02 0.0049 19.3 6.0 77 17-107 6-84 (130)
238 cd06451 AGAT_like Alanine-glyo 25.1 3.9E+02 0.0084 21.9 9.1 95 9-107 58-155 (356)
239 PF14097 SpoVAE: Stage V sporu 24.6 3.2E+02 0.0068 20.7 6.5 75 29-105 1-80 (180)
240 cd08190 HOT Hydroxyacid-oxoaci 24.5 4.6E+02 0.01 22.6 8.5 83 9-92 6-96 (414)
241 COG1179 Dinucleotide-utilizing 24.5 1.3E+02 0.0028 24.3 3.9 76 15-101 43-120 (263)
242 COG4087 Soluble P-type ATPase 24.2 2.9E+02 0.0062 20.1 6.4 74 10-85 28-102 (152)
243 cd05212 NAD_bind_m-THF_DH_Cycl 24.2 2.8E+02 0.0061 20.0 6.5 62 28-96 29-91 (140)
244 PLN02331 phosphoribosylglycina 24.1 3.4E+02 0.0075 21.0 9.1 86 9-98 8-99 (207)
245 PF04122 CW_binding_2: Putativ 24.0 2.1E+02 0.0046 18.5 7.7 82 9-95 4-90 (92)
246 PF03435 Saccharop_dh: Sacchar 23.9 4.4E+02 0.0096 22.2 8.0 80 14-101 10-90 (386)
247 COG0745 OmpR Response regulato 23.7 3.6E+02 0.0079 21.1 6.9 65 29-101 2-67 (229)
248 COG0031 CysK Cysteine synthase 23.6 1.6E+02 0.0035 24.4 4.5 58 26-88 235-294 (300)
249 PRK08064 cystathionine beta-ly 23.6 4.6E+02 0.01 22.3 10.2 91 9-107 77-169 (390)
250 PTZ00075 Adenosylhomocysteinas 23.4 2.3E+02 0.005 25.2 5.7 72 27-98 253-331 (476)
251 KOG0053 Cystathionine beta-lya 23.3 3.6E+02 0.0078 23.5 6.6 62 41-107 132-193 (409)
252 PRK06702 O-acetylhomoserine am 23.2 5.1E+02 0.011 22.6 10.0 92 10-107 85-178 (432)
253 PRK03892 ribonuclease P protei 23.2 3.7E+02 0.0081 21.1 13.0 37 168-204 159-195 (216)
254 COG1581 Ssh10b Archaeal DNA-bi 23.2 2E+02 0.0044 19.1 4.0 38 2-39 3-41 (91)
255 PRK11609 nicotinamidase/pyrazi 22.6 3.5E+02 0.0077 20.6 7.4 66 42-107 133-199 (212)
256 KOG2862 Alanine-glyoxylate ami 22.5 4.8E+02 0.01 22.1 8.2 59 28-88 93-154 (385)
257 COG0313 Predicted methyltransf 22.3 4.4E+02 0.0095 21.6 6.8 79 15-100 22-104 (275)
258 cd03411 Ferrochelatase_N Ferro 22.3 1E+02 0.0022 22.7 2.9 12 10-21 63-74 (159)
259 PRK10624 L-1,2-propanediol oxi 22.2 4.9E+02 0.011 22.1 8.5 80 9-89 13-100 (382)
260 PLN02926 histidinol dehydrogen 22.1 3.4E+02 0.0073 23.8 6.3 41 12-52 134-180 (431)
261 PF02641 DUF190: Uncharacteriz 22.1 1.4E+02 0.0029 20.2 3.3 29 7-36 15-43 (101)
262 cd08192 Fe-ADH7 Iron-containin 22.1 4.8E+02 0.01 22.0 8.4 80 9-89 7-94 (370)
263 PF11576 DUF3236: Protein of u 22.0 89 0.0019 22.8 2.4 54 28-81 36-97 (154)
264 COG4271 Predicted nucleotide-b 22.0 3.1E+02 0.0067 21.4 5.4 13 27-39 82-94 (233)
265 cd08189 Fe-ADH5 Iron-containin 21.9 4.9E+02 0.011 22.0 8.5 87 8-95 8-102 (374)
266 COG0075 Serine-pyruvate aminot 21.7 5.3E+02 0.011 22.3 10.4 91 14-107 69-162 (383)
267 PF13712 Glyco_tranf_2_5: Glyc 21.6 3.9E+02 0.0084 20.7 6.7 29 76-104 54-82 (217)
268 TIGR01324 cysta_beta_ly_B cyst 21.5 5.1E+02 0.011 22.0 10.4 91 9-107 73-166 (377)
269 COG2247 LytB Putative cell wal 21.4 5E+02 0.011 21.9 7.8 82 15-104 65-153 (337)
270 PF08952 DUF1866: Domain of un 21.4 2.9E+02 0.0062 20.3 4.9 60 66-125 16-80 (146)
271 PRK08173 DNA topoisomerase III 21.2 3.4E+02 0.0073 26.2 6.7 66 8-75 78-149 (862)
272 cd08193 HVD 5-hydroxyvalerate 21.1 5.1E+02 0.011 21.9 8.5 80 9-89 9-96 (376)
273 COG1658 Small primase-like pro 21.0 3.2E+02 0.0069 19.5 6.1 70 27-103 9-79 (127)
274 KOG2892 Porphobilinogen deamin 20.9 74 0.0016 26.1 2.0 31 2-32 52-82 (320)
275 PRK13028 tryptophan synthase s 20.9 2.2E+02 0.0049 24.6 5.1 68 27-99 328-397 (402)
276 PTZ00331 alpha/beta hydrolase; 20.9 4E+02 0.0086 20.5 7.3 67 42-109 137-203 (212)
277 PRK07812 O-acetylhomoserine am 20.7 5.7E+02 0.012 22.3 9.8 92 9-107 92-186 (436)
278 KOG0339 ATP-dependent RNA heli 20.7 2.5E+02 0.0055 25.4 5.3 69 11-83 279-353 (731)
279 KOG0203 Na+/K+ ATPase, alpha s 20.4 4.7E+02 0.01 25.3 7.1 80 17-103 598-682 (1019)
280 PLN03013 cysteine synthase 20.2 3.4E+02 0.0074 23.8 6.1 62 29-90 200-261 (429)
281 KOG0541 Alkyl hydroperoxide re 20.2 2.9E+02 0.0062 20.7 4.7 42 15-58 68-111 (171)
282 cd06371 PBP1_sensory_GC_DEF_li 20.1 5.3E+02 0.011 21.7 9.3 79 26-105 131-216 (382)
No 1
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=100.00 E-value=3.5e-43 Score=273.97 Aligned_cols=203 Identities=42% Similarity=0.655 Sum_probs=177.6
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
+||||++++|+|+|.|+++++.+++.+++|+||+.+++++++++++.+ .++.++.||.+|++|+++||+.++.++|+|
T Consensus 18 ~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~--~~v~iv~GG~tR~~SV~ngL~~l~~~~d~V 95 (221)
T PF01128_consen 18 IPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK--KKVKIVEGGATRQESVYNGLKALAEDCDIV 95 (221)
T ss_dssp S-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH--TTEEEEE--SSHHHHHHHHHHCHHCTSSEE
T ss_pred CCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC--CCEEEecCChhHHHHHHHHHHHHHcCCCEE
Confidence 599999999999999999999999999999999999988888888877 567889999999999999999998666999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh-cCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 159 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~ 159 (210)
++|||.+||++++.|+++++.+.+ .++++++.|+.+++++++++|.+.++++|+.+|..||||+|+++.|..++.....
T Consensus 96 lIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~~p~~DTik~v~~~~~v~~tldR~~l~~~QTPQ~F~~~~l~~a~~~a~~ 175 (221)
T PF01128_consen 96 LIHDAARPFVSPELIDRVIEAAREGHGAAIPALPVTDTIKRVDDDGFVTETLDRSKLWAVQTPQAFRFELLLEAYEKADE 175 (221)
T ss_dssp EEEETTSTT--HHHHHHHHHHHHHTCSEEEEEEE-SSEEEEESTTSBEEEEETGGGEEEEEEEEEEEHHHHHHHHHTHHH
T ss_pred EEEccccCCCCHHHHHHHHHHHHhhcCcEEEEEeccccEEEEecCCcccccCCHHHeeeecCCCeecHHHHHHHHHHHHh
Confidence 999999999999999999999998 8999999999999999887889999999999999999999999999999998866
Q ss_pred cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320 160 EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 160 ~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
++..+||+.++++.+|.++.+|+++..+++|+||+||++||.++++
T Consensus 176 ~~~~~tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll~~ 221 (221)
T PF01128_consen 176 EGFEFTDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALLKQ 221 (221)
T ss_dssp HTHHHSSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHhcC
Confidence 6667899999999999999999999999999999999999999874
No 2
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=100.00 E-value=4.7e-40 Score=255.35 Aligned_cols=205 Identities=39% Similarity=0.608 Sum_probs=189.1
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh-hcCCcEEEecCCccHHHHHHHHHHcccC-CCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KINVDLKFSLPGKERQDSVYSGLQEVDF-NSE 78 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~-~~~~~v~~~~~~~~~~~si~~~l~~~~~-~~d 78 (210)
+|||+++++|+|||+|+++.++.++.+++|+|++..++..++.+..+ ..+..+.++.||.+|.+|+++||+++.. +.+
T Consensus 22 ~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~v~~v~GG~~R~~SV~~gL~~~~~~~~~ 101 (230)
T COG1211 22 VPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEVVKGGATRQESVYNGLQALSKYDSD 101 (230)
T ss_pred CCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhhccCCeEEEecCCccHHHHHHHHHHHhhccCCC
Confidence 59999999999999999999999999999999999977677777663 3345688999999999999999999974 579
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHH
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVN 158 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~ 158 (210)
+||+||+.+||++++.|+++++.....++++++.|+.+++++.+.+|.+.++++|+.+|..||||+|+.+.|..++....
T Consensus 102 ~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~alpv~DTik~~~~~~~i~~t~~R~~l~~~QTPQ~F~~~~L~~a~~~a~ 181 (230)
T COG1211 102 WVLVHDAARPFLTPKLIKRLIELADKYGAAILALPVTDTLKRVDADGNIVETVDRSGLWAAQTPQAFRLELLKQALARAF 181 (230)
T ss_pred EEEEeccccCCCCHHHHHHHHHhhccCCcEEEEeeccCcEEEecCCCCeeeccChhhhhhhhCCccccHHHHHHHHHHHH
Confidence 99999999999999999999977777899999999999999987778899999999999999999999999999999888
Q ss_pred hcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320 159 REGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 159 ~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
.++..+||+.++++..|.++..|.++..+++|+||+||++|+.+++.
T Consensus 182 ~~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~~ 228 (230)
T COG1211 182 AEGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILRR 228 (230)
T ss_pred hcCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhcC
Confidence 88888999999999999999999999999999999999999999876
No 3
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=100.00 E-value=1.2e-38 Score=254.04 Aligned_cols=207 Identities=83% Similarity=1.233 Sum_probs=186.3
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
.||+|++++|+|||.|+++++.....+++|+||+++++.+.++..+++++..+.++.||.+|++|+++|+..++.+.++|
T Consensus 42 ~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~~~~i~~v~gg~~r~~SV~~gl~~l~~~~~~V 121 (252)
T PLN02728 42 MPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENIDVPLKFALPGKERQDSVFNGLQEVDANSELV 121 (252)
T ss_pred CCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhcCCceEEcCCCCchHHHHHHHHHhccCCCCEE
Confidence 49999999999999999999998766999999999876555656666666666677788999999999999986556899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE 160 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~ 160 (210)
++|+++|||++++.|+++++....+++++++.|+.++++++++++.+..+++|+.+|..||||+|+...|..++.....+
T Consensus 122 lihDaarP~vs~~~i~~li~~~~~~ga~i~~~~~~dtik~v~~~~~v~~t~~R~~l~~~QTPQ~F~~~~l~~a~~~~~~~ 201 (252)
T PLN02728 122 CIHDSARPLVTSADIEKVLKDAAVHGAAVLGVPVKATIKEANSDSFVVKTLDRKRLWEMQTPQVIKPELLRRGFELVERE 201 (252)
T ss_pred EEecCcCCCCCHHHHHHHHHHHhhCCeEEEeecchhhEEEecCCCceeeccChHHeEEEeCCccchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999987767788889999999999999999999999999987777
Q ss_pred CCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhccc
Q 028320 161 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 207 (210)
Q Consensus 161 ~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~ 207 (210)
++++||+.++++..|.++.+++++..+++|+||+||..|+.+++.+.
T Consensus 202 ~~~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~~~ 248 (252)
T PLN02728 202 GLEVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNERS 248 (252)
T ss_pred CCCcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhhcc
Confidence 78899999999999999999999999999999999999999998654
No 4
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=7.1e-36 Score=236.37 Aligned_cols=207 Identities=32% Similarity=0.555 Sum_probs=180.6
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCC---cEEEecCCccHHHHHHHHHHcccCCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV---DLKFSLPGKERQDSVYSGLQEVDFNS 77 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~---~v~~~~~~~~~~~si~~~l~~~~~~~ 77 (210)
.||+|++++|+|||.|+++++.+++.+++|+||++++++..+.+.+++++. .+.++.++.++.+|+++|++.++ +.
T Consensus 20 ~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~r~~sv~~gl~~~~-~~ 98 (230)
T PRK13385 20 LNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVADQRVEVVKGGTERQESVAAGLDRIG-NE 98 (230)
T ss_pred CCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcCCCceEEcCCCchHHHHHHHHHHhcc-CC
Confidence 489999999999999999999988778999999998765556666666653 35677788889999999999985 35
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHH
Q 028320 78 ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELV 157 (210)
Q Consensus 78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~ 157 (210)
+.|++|+||+||+++++|+++++.+.++++++++.++.++++..+ +|.+..+++|+.++.+|+||+|+++.|..++...
T Consensus 99 d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~~~dti~~~~-~~~~~~~i~r~~~~~~qtpq~f~~~~l~~~~~~~ 177 (230)
T PRK13385 99 DVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVEVKDTVKRVK-DKQVIETVDRNELWQGQTPQAFELKILQKAHRLA 177 (230)
T ss_pred CeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEEEeccceEEEEc-CCeeEeccCHHHHhhhcCCceeeHHHHHHHHHHH
Confidence 789999999999999999999999888888899999998887764 4667778899999999999999999999998865
Q ss_pred HhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcccCC
Q 028320 158 NREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSES 209 (210)
Q Consensus 158 ~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~~~ 209 (210)
...+.+++|+..++...|.++.+++++..+++||||+||+.|+.+++..++.
T Consensus 178 ~~~~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~~~~~~ 229 (230)
T PRK13385 178 SEQQFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQGDIAD 229 (230)
T ss_pred HhcCCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHhhcccC
Confidence 4455678999999999999999999999999999999999999999887653
No 5
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=100.00 E-value=1.2e-33 Score=223.22 Aligned_cols=207 Identities=41% Similarity=0.610 Sum_probs=175.8
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
.||+|++++|+|||+|+++++.+++.+++|+|+++++.+..+.+........+.++.++.++.+|+..|++.++ +.+.+
T Consensus 21 ~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~-~~d~v 99 (227)
T PRK00155 21 RPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKDPKVTVVAGGAERQDSVLNGLQALP-DDDWV 99 (227)
T ss_pred CCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhccCCceEEeCCcchHHHHHHHHHHhCC-CCCEE
Confidence 38999999999999999999998777899999999876433332221111235567777788999999999884 36799
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE 160 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~ 160 (210)
++++||+||+++++++++++.+...++++++.|+.+++++++++|.+.++++|+.++..|+|++|+.+.|..++...+++
T Consensus 100 lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~~ 179 (227)
T PRK00155 100 LVHDAARPFLTPDDIDRLIEAAEETGAAILAVPVKDTIKRSDDGGGIVDTPDRSGLWAAQTPQGFRIELLREALARALAE 179 (227)
T ss_pred EEccCccCCCCHHHHHHHHHHHhhCCCEEEEEeccccEEEEcCCCceeecCChHHheeeeCCccchHHHHHHHHHHHHhc
Confidence 99999999999999999999987777888888988887666445777788899999999999999999999999888777
Q ss_pred CCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcccC
Q 028320 161 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 208 (210)
Q Consensus 161 ~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~~ 208 (210)
++|++|...+++..|.++..+.++..++|||||+||+.||.+++++++
T Consensus 180 ~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~~~~ 227 (227)
T PRK00155 180 GKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKRRIA 227 (227)
T ss_pred CCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHhccC
Confidence 889999999999999999999888889999999999999999998864
No 6
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=100.00 E-value=2e-32 Score=214.75 Aligned_cols=201 Identities=39% Similarity=0.627 Sum_probs=170.7
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
.||+|++++|+|||+|+++++.+++.+++|+||+++++...+.+.+... ..+.++.++.++.+|+..|+..++ +.|.+
T Consensus 17 ~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sl~~~l~~~~-~~d~v 94 (217)
T TIGR00453 17 VPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-AVPKIVAGGDTRQDSVRNGLKALK-DAEWV 94 (217)
T ss_pred CCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-CcEEEeCCCchHHHHHHHHHHhCC-CCCEE
Confidence 3899999999999999999999886689999999987544444433321 134566777778999999999882 36899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE 160 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~ 160 (210)
++++||+||+++++|+++++.+...++++++.|..+++..++++|.+..+++|+.++.+|+|++|+...+..++....+.
T Consensus 95 lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~r~~~~~~~~p~~f~~~~l~~~~~~~~~~ 174 (217)
T TIGR00453 95 LVHDAARPFVPKELLDRLLEALRKAGAAILALPVADTLKRVEADGFIVETVDREGLWAAQTPQAFRTELLKKALARAKEE 174 (217)
T ss_pred EEccCccCCCCHHHHHHHHHHHhhCCcEEEeEeccceEEEEcCCCceeecCChHHeEEEeCCCcccHHHHHHHHHHHHhc
Confidence 99999999999999999999887777778888988886665556778888999999999999999999999988776667
Q ss_pred CCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHh
Q 028320 161 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 203 (210)
Q Consensus 161 ~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~ 203 (210)
+++++|...+++..|.++..+.++..+++||||+||+.|++++
T Consensus 175 ~~~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~~ 217 (217)
T TIGR00453 175 GFEITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEALL 217 (217)
T ss_pred CCCCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHhC
Confidence 8889999999999999999999988889999999999999874
No 7
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=100.00 E-value=9.4e-32 Score=210.88 Aligned_cols=198 Identities=40% Similarity=0.598 Sum_probs=170.5
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh--cCCcEEEecCCccHHHHHHHHHHccc-CCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK--INVDLKFSLPGKERQDSVYSGLQEVD-FNS 77 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~--~~~~v~~~~~~~~~~~si~~~l~~~~-~~~ 77 (210)
.||+|++++|+|||+|+++++.+++.+++|+||++++........ +. ....+.++.++.++.+|+..|++.++ .+.
T Consensus 18 ~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~si~~al~~~~~~~~ 96 (218)
T cd02516 18 IPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKEL-AKYGLSKVVKIVEGGATRQDSVLNGLKALPDADP 96 (218)
T ss_pred CCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHH-HhcccCCCeEEECCchHHHHHHHHHHHhcccCCC
Confidence 389999999999999999999988768999999998764333222 22 22345667776778999999999984 346
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHH
Q 028320 78 ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELV 157 (210)
Q Consensus 78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~ 157 (210)
+.+++++||+||+++++++++++.+...++++++.|+.+++++.+++|.+.++++|+.++.+++|++|+.+.+.+++...
T Consensus 97 ~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~~P~~f~~~~~~~~~~~~ 176 (218)
T cd02516 97 DIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVPVTDTIKRVDDDGVVVETLDREKLWAAQTPQAFRLDLLLKAHRQA 176 (218)
T ss_pred CEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEEeccccEEEecCCCceeecCChHHhhhhcCCCcccHHHHHHHHHHH
Confidence 89999999999999999999999998888888899998887776667889899999999999999999999999999988
Q ss_pred HhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHH
Q 028320 158 NREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA 199 (210)
Q Consensus 158 ~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a 199 (210)
+++|+|+||...++...|.++..+.++..++|||||+||+.|
T Consensus 177 ~~~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~~ 218 (218)
T cd02516 177 SEEGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLALA 218 (218)
T ss_pred HhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhhC
Confidence 888899999999999999999999988889999999999764
No 8
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=100.00 E-value=5.3e-31 Score=220.70 Aligned_cols=192 Identities=32% Similarity=0.413 Sum_probs=163.8
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
.||+|++++|+|||+|+++++.+++.+++|+||+++++...+......+. .+.++.|+.+|++|+++|++.++ .++|
T Consensus 23 ~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~~-~v~~v~gG~~r~~SV~~gL~~l~--~d~V 99 (378)
T PRK09382 23 VKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEIK-FVTLVTGGATRQESVRNALEALD--SEYV 99 (378)
T ss_pred CCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccCC-eEEEeCCCchHHHHHHHHHHhcC--CCeE
Confidence 48999999999999999999999877899999999876433333332222 25567888899999999999986 4899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE 160 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~ 160 (210)
++|+||+||++++.++++++.+.++++++++.|+.+++++.. .+++|+.++..||||.|+...+..++ ..
T Consensus 100 LVhdadrPfv~~e~I~~li~~~~~~~a~i~~~pv~Dtik~~~------~tldR~~l~~~QTPQ~f~~~~l~~a~----~~ 169 (378)
T PRK09382 100 LIHDAARPFVPKELIDRLIEALDKADCVLPALPVADTLKRAN------ETVDREGLKLIQTPQLSRTKTLKAAA----DG 169 (378)
T ss_pred EEeeccccCCCHHHHHHHHHHhhcCCeEEEEEEeccCcEEee------eEcCcccEEEEECCCCCCHHHHHHHH----hC
Confidence 999999999999999999999888888999999999876532 36899999999999999988776543 23
Q ss_pred CCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320 161 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 161 ~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
++++||+.++++..|.++.++.++..+++|+||+||..|+.+++.
T Consensus 170 ~~~~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 170 RGDFTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCCcccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 567899999999999999999999999999999999999999875
No 9
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.93 E-value=3.1e-24 Score=170.47 Aligned_cols=189 Identities=17% Similarity=0.217 Sum_probs=136.7
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE----ecCCccHHHHHHHHHHcccCCC
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF----SLPGKERQDSVYSGLQEVDFNS 77 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~----~~~~~~~~~si~~~l~~~~~~~ 77 (210)
+|+|++++|||||.|+++++.+++ +++|+|++++++ +.+.+++++..+.. ..+|.++..++..++.. . +.
T Consensus 15 ~K~L~~l~GkPli~~~le~~~~~~-~d~VvVvt~~~~---i~~~~~~~g~~~v~~~~~~~~Gt~r~~~~~~~l~~-~-~~ 88 (238)
T TIGR00466 15 GKPLEDIFGKPMIVHVAENANESG-ADRCIVATDDES---VAQTCQKFGIEVCMTSKHHNSGTERLAEVVEKLAL-K-DD 88 (238)
T ss_pred CCeecccCCcCHHHHHHHHHHhCC-CCeEEEEeCHHH---HHHHHHHcCCEEEEeCCCCCChhHHHHHHHHHhCC-C-CC
Confidence 799999999999999999999886 999999998654 46677777765433 23456666665555532 2 36
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEeeeccc--------ceEEc-cCCCce---e-ee--cCccCeeeec
Q 028320 78 ELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKA--------TIKEA-NSESFV---V-RT--LDRKTLWEMQ 140 (210)
Q Consensus 78 d~vl~~~~d~Pli~~~~i~~~i~~~~~--~~~~~~~~~~~~--------~~~~~-~~~g~v---~-~~--~~r~~~~~~~ 140 (210)
|+|++++||+||+++++|+++++.+.. .+.++++.|+.+ .++.+ +.+|++ . .. .+|+.++..+
T Consensus 89 d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~~~~ 168 (238)
T TIGR00466 89 ERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFAKRQ 168 (238)
T ss_pred CEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcccccc
Confidence 899999999999999999999998854 466888888876 55555 446642 2 22 3677766667
Q ss_pred CCc-----------ccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCCC-CccccChhhHH
Q 028320 141 TPQ-----------VIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYT-NIKVTTPDDLL 197 (210)
Q Consensus 141 ~P~-----------~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~v~~v~~~~~-~~dIdt~~Dl~ 197 (210)
+|+ +|+++.|..... .....++..+..+.++ ++|.++.++..+.. ..+||||+|++
T Consensus 169 tpq~~~~~~h~Giy~~~~~~L~~~~~-~~~~~le~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~~ 238 (238)
T TIGR00466 169 TPVGDNLLRHIGIYGYRAGFIEEYVA-WKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDLE 238 (238)
T ss_pred cccccceeEEEEEEeCCHHHHHHHHh-CCCCcccccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHcC
Confidence 775 356777666443 2333355566666665 48999998776555 68999999984
No 10
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=8.1e-24 Score=161.01 Aligned_cols=197 Identities=16% Similarity=0.212 Sum_probs=138.5
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC----CccHHHHHHHHHHccc-CC
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP----GKERQDSVYSGLQEVD-FN 76 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~----~~~~~~si~~~l~~~~-~~ 76 (210)
.|+|..|+|+|||.|+.+++.+++ .++++|+||++. |.+.++++|..+.++.. |++| +..+++.+. .+
T Consensus 19 gKPLadI~GkpmI~rV~e~a~~s~-~~rvvVATDde~---I~~av~~~G~~avmT~~~h~SGTdR---~~Ev~~~l~~~~ 91 (247)
T COG1212 19 GKPLADIGGKPMIVRVAERALKSG-ADRVVVATDDER---IAEAVQAFGGEAVMTSKDHQSGTDR---LAEVVEKLGLPD 91 (247)
T ss_pred CCchhhhCCchHHHHHHHHHHHcC-CCeEEEEcCCHH---HHHHHHHhCCEEEecCCCCCCccHH---HHHHHHhcCCCc
Confidence 499999999999999999999995 899999999875 57888999988877543 4444 556666663 35
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc--------eEEc-cCCCcee----eec--Ccc-----
Q 028320 77 SELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT--------IKEA-NSESFVV----RTL--DRK----- 134 (210)
Q Consensus 77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~--------~~~~-~~~g~v~----~~~--~r~----- 134 (210)
.++|++++||.||+.++.|+++++.++...+ +.++.+..+. ++.+ |.+|+.- .++ .|+
T Consensus 92 ~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~~~~~ 171 (247)
T COG1212 92 DEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDNFGGT 171 (247)
T ss_pred ceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccccCCc
Confidence 6899999999999999999999999987644 5666666543 2322 3334321 122 233
Q ss_pred CeeeecCCcccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCC-CCccccChhhHHHHHHHhhcc
Q 028320 135 TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSY-TNIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 135 ~~~~~~~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~v~~v~~~~-~~~dIdt~~Dl~~a~~~~~~~ 206 (210)
.++..-.-++|+++.|.+...... ..++-.+..+.++ ++|.++++....+ .+.+||||+||+.+++++...
T Consensus 172 p~l~HIGIYayr~~~L~~f~~~~p-s~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~~ 245 (247)
T COG1212 172 PFLRHIGIYAYRAGFLERFVALKP-SPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSNN 245 (247)
T ss_pred chhheeehHHhHHHHHHHHHhcCC-chhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHhh
Confidence 222233336677777666544321 1122333344444 5899999876664 459999999999999998754
No 11
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.92 E-value=1.7e-23 Score=164.51 Aligned_cols=190 Identities=13% Similarity=0.090 Sum_probs=133.3
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE------ecCCccHHHHHHHHHHcccC
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF------SLPGKERQDSVYSGLQEVDF 75 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~------~~~~~~~~~si~~~l~~~~~ 75 (210)
+|++++++|+|||.|+++++.+++.+++|+|+|++++ +.+.++++|..+.+ ..+++++.+++.+|++.++.
T Consensus 15 ~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~~~---i~~~a~~~g~~v~~~r~~~l~~d~~~~~~si~~~l~~l~~ 91 (222)
T TIGR03584 15 RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDDEE---IAEVAKSYGASVPFLRPKELADDFTGTAPVVKHAIEELKL 91 (222)
T ss_pred CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCCHH---HHHHHHHcCCEeEEeChHHHcCCCCCchHHHHHHHHHHhh
Confidence 5999999999999999999999998999999888754 46677788876544 34566778999999998842
Q ss_pred --CCCEEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEeeeccc-ceE--EccCCCceeeecCccCeeeecCCcccChH
Q 028320 76 --NSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKA-TIK--EANSESFVVRTLDRKTLWEMQTPQVIKPD 148 (210)
Q Consensus 76 --~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~--~~~~~~~~~~~-~~~--~~~~~g~v~~~~~r~~~~~~~~P~~f~~~ 148 (210)
+.|+|++++||+||+++++|+++++.+... ++++++++... +.+ ..+++|......+.... -+++
T Consensus 92 ~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~rQ 163 (222)
T TIGR03584 92 QKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQRAFKLKENGGVEMFFPEHFN--------TRSQ 163 (222)
T ss_pred cCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChHHheEECCCCcEEecCCCccc--------CCCC
Confidence 468999999999999999999999998753 56777777542 222 22334543322111111 1334
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHh---CCCCeE-EEecCCCCccccChhhHHHHHHHhh
Q 028320 149 LLKKGFELVNREGLEVTDDVSIVEH---LKHPVY-ITEGSYTNIKVTTPDDLLIAERILN 204 (210)
Q Consensus 149 ~l~~~~~~~~~~~~~~~d~~~~~~~---~g~~v~-~v~~~~~~~dIdt~~Dl~~a~~~~~ 204 (210)
.+...|..+ ..+|+.....+.+. .|.++. ++++...++||||++||+.||.+++
T Consensus 164 d~~~~y~~n--ga~y~~~~~~~~~~~~~~~~~~~~~~m~~~~~iDID~~~D~~~ae~l~~ 221 (222)
T TIGR03584 164 DLEEAYHDA--GQFYWGKSQAWLESGPIFSPHSIPIVLPRHLVQDIDTLEDWERAELLYK 221 (222)
T ss_pred CCchheeeC--CeEEEEEHHHHHhcCCccCCCcEEEEeCccceeCCCCHHHHHHHHHHHh
Confidence 444434321 12555554444432 355544 4666778999999999999999874
No 12
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=5.9e-24 Score=160.58 Aligned_cols=194 Identities=15% Similarity=0.205 Sum_probs=146.6
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE------ecCCccHHHHHHHHHHcccC
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF------SLPGKERQDSVYSGLQEVDF 75 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~------~~~~~~~~~si~~~l~~~~~ 75 (210)
.||+.+++|+|||.|+|++++.++.||+|+|+++++. |.+.+++||+++.+ ..+.++...++.++++....
T Consensus 19 ~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~~---Il~~A~~ygak~~~~Rp~~LA~D~ast~~~~lh~le~~~~ 95 (228)
T COG1083 19 NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEE---ILEEAKKYGAKVFLKRPKELASDRASTIDAALHALESFNI 95 (228)
T ss_pred ccchHHhCCcchHHHHHHHHhcCCccceEEEcCCcHH---HHHHHHHhCccccccCChhhccCchhHHHHHHHHHHHhcc
Confidence 5999999999999999999999999999999999875 46788899987633 23333334567888888766
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccceEEc--cCCCceeeecCccCeeeecCCc-ccChHHH
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKATIKEA--NSESFVVRTLDRKTLWEMQTPQ-VIKPDLL 150 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~--~~~g~v~~~~~r~~~~~~~~P~-~f~~~~l 150 (210)
..+.++.++++.||++..+|++.++.+.+. ++.++++|+....+.. ..+|.+...-+ .|. .-+++.|
T Consensus 96 ~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~f~~~~~~~~~~~~--------~~~~~~rrQ~L 167 (228)
T COG1083 96 DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKAFSLNNGEVKPVNE--------DPDFETRRQDL 167 (228)
T ss_pred ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecccchHHHHHhcCCceeeccc--------CCccccccccc
Confidence 678899999999999999999999999764 5689999987654332 22344332111 122 2356777
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHh---C-CCCeEEEecCCCCccccChhhHHHHHHHhhcccC
Q 028320 151 KKGFELVNREGLEVTDDVSIVEH---L-KHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 208 (210)
Q Consensus 151 ~~~~~~~~~~~~~~~d~~~~~~~---~-g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~~ 208 (210)
..+|..++ .+|+.+...++++ + +....++++....+||||+.||+.+|.++..+..
T Consensus 168 pk~Y~~Ng--aiYi~~~~~l~e~~~~f~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~~~~ 227 (228)
T COG1083 168 PKAYRENG--AIYINKKDALLENDCFFIPNTILYEMPEDESIDIDTELDLEIAENLIFLKEE 227 (228)
T ss_pred hhhhhhcC--cEEEehHHHHhhcCceecCCceEEEcCcccccccccHHhHHHHHHHhhhhhc
Confidence 87787642 3678777666664 3 3556678888899999999999999999876654
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=4.1e-22 Score=164.27 Aligned_cols=205 Identities=19% Similarity=0.213 Sum_probs=158.7
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCC-C
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFN-S 77 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~-~ 77 (210)
+||.|++++||||++|+++++.... .++++||+++.. +.+++.+.+.. ++.|+.+ .-...++++.|+.++..+ .
T Consensus 20 lPKVLH~vaGkpMl~hVi~~a~~l~-~~~i~vVvGh~a-e~V~~~~~~~~-~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~ 96 (460)
T COG1207 20 LPKVLHPVAGKPMLEHVIDAARALG-PDDIVVVVGHGA-EQVREALAERD-DVEFVLQEEQLGTGHAVLQALPALADDYD 96 (460)
T ss_pred CcccchhccCccHHHHHHHHHhhcC-cceEEEEEcCCH-HHHHHHhcccc-CceEEEecccCChHHHHHhhhhhhhcCCC
Confidence 5999999999999999999999875 799999999997 56777665433 4566554 234489999999999433 3
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccceE--Ec--cCCCceeeecCc-------cCeeeecCC-c
Q 028320 78 ELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATIK--EA--NSESFVVRTLDR-------KTLWEMQTP-Q 143 (210)
Q Consensus 78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~--~~--~~~g~v~~~~~r-------~~~~~~~~P-~ 143 (210)
..+|++.||.||+++++++++++.....+ ..+......+|.. ++ +.+|.+.++++. ..+..+++- +
T Consensus 97 g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNtGiy 176 (460)
T COG1207 97 GDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINTGIY 176 (460)
T ss_pred CcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEeeeEE
Confidence 47899999999999999999998876544 3566666667632 22 335677776642 335555553 6
Q ss_pred ccChHHHHHHHHHHHhc----CCCCCcHHHHHHhCCCCeEEEecC--CCCccccChhhHHHHHHHhhcccC
Q 028320 144 VIKPDLLKKGFELVNRE----GLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLSSE 208 (210)
Q Consensus 144 ~f~~~~l~~~~~~~~~~----~~~~~d~~~~~~~~g~~v~~v~~~--~~~~dIdt~~Dl~~a~~~~~~~~~ 208 (210)
+|....|.+|+.+...+ +||+||-..++...|.++..+..+ .+..+|+++.+|..+|+++++|++
T Consensus 177 ~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~ 247 (460)
T COG1207 177 AFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIA 247 (460)
T ss_pred EEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHH
Confidence 78888888888876664 379999999999999999876553 578999999999999999998864
No 14
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.89 E-value=2.4e-22 Score=157.94 Aligned_cols=188 Identities=15% Similarity=0.195 Sum_probs=129.4
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE------ecCCccHHHHHHHHHHcccC
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF------SLPGKERQDSVYSGLQEVDF 75 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~------~~~~~~~~~si~~~l~~~~~ 75 (210)
+|+|++++|+|||+|+++++.+++.+++|+|+++++. +.+.+.+++..+.+ ..|+.++.+++.+|+++++.
T Consensus 17 ~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~ 93 (223)
T cd02513 17 GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDEE---IAEVARKYGAEVPFLRPAELATDTASSIDVILHALDQLEE 93 (223)
T ss_pred CcccchhCCccHHHHHHHHHHhCCCCCEEEEECCcHH---HHHHHHHhCCCceeeCChHHCCCCCCcHHHHHHHHHHHHH
Confidence 5999999999999999999999877899999886543 44556666652222 23445668899999988753
Q ss_pred ---CCCEEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccceEEc---cCCCcee-eecCccCeeeecCCcccC
Q 028320 76 ---NSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKATIKEA---NSESFVV-RTLDRKTLWEMQTPQVIK 146 (210)
Q Consensus 76 ---~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~---~~~g~v~-~~~~r~~~~~~~~P~~f~ 146 (210)
+.+.+++++||+||+++++|+++++.+... ++++++.+..++.+.. .++|... ...+++..+.+++|+.|.
T Consensus 94 ~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 173 (223)
T cd02513 94 LGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGLDDNGLEPVNYPEDKRTRRQDLPPAYH 173 (223)
T ss_pred hCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheeeccCCceeccCcccccCCcCCChhHee
Confidence 258999999999999999999999988654 4577777766543321 1122111 112344456666776654
Q ss_pred hHHHHHHHHHHHhcCCCCCcHHHHHH---hCCCCeE-EEecCCCCccccChhhHHHHHHHh
Q 028320 147 PDLLKKGFELVNREGLEVTDDVSIVE---HLKHPVY-ITEGSYTNIKVTTPDDLLIAERIL 203 (210)
Q Consensus 147 ~~~l~~~~~~~~~~~~~~~d~~~~~~---~~g~~v~-~v~~~~~~~dIdt~~Dl~~a~~~~ 203 (210)
... ++|......+.+ ..|.++. ++.++..++||||++||+.||.++
T Consensus 174 ~n~-----------~~y~~~~~~~~~~~~~~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~~ 223 (223)
T cd02513 174 ENG-----------AIYIAKREALLESNSFFGGKTGPYEMPRERSIDIDTEEDFELAEALL 223 (223)
T ss_pred ECC-----------EEEEEEHHHHHhcCCccCCCeEEEEeCccceeCCCCHHHHHHHHHhC
Confidence 211 233333333333 2467774 566677899999999999999864
No 15
>PLN02917 CMP-KDO synthetase
Probab=99.88 E-value=3e-21 Score=157.41 Aligned_cols=199 Identities=14% Similarity=0.174 Sum_probs=135.2
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe----cCCccHHHHHHHHHHcccCCC
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS----LPGKERQDSVYSGLQEVDFNS 77 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~----~~~~~~~~si~~~l~~~~~~~ 77 (210)
+|+|++++|+|||.|+++++.+++.++.|+|+++++ .+.+.+.++++.+.+. .+| .+++..|++.++.+.
T Consensus 63 ~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~~~~e---~I~~~~~~~~v~vi~~~~~~~~G---T~~~~~a~~~l~~~~ 136 (293)
T PLN02917 63 GKPLVHILGKPMIQRTWERAKLATTLDHIVVATDDE---RIAECCRGFGADVIMTSESCRNG---TERCNEALKKLEKKY 136 (293)
T ss_pred CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEECChH---HHHHHHHHcCCEEEeCCcccCCc---hHHHHHHHHhccCCC
Confidence 699999999999999999999887667777665543 4566777666554332 233 344567888776446
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHhcC-CeE--Eeeec--ccc-----eEEc-cCCCc-e---eeecC--cc------
Q 028320 78 ELVCIHDSARPLVLSKDVQKVLMDALRVG-AAV--LGVPA--KAT-----IKEA-NSESF-V---VRTLD--RK------ 134 (210)
Q Consensus 78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~-~~~--~~~~~--~~~-----~~~~-~~~g~-v---~~~~~--r~------ 134 (210)
|.|++++||+||+++++|+++++.+.... ..+ .+.++ .++ ++.+ +++|. + +.+++ ++
T Consensus 137 d~Vlil~gD~PlI~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~~ 216 (293)
T PLN02917 137 DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNPQ 216 (293)
T ss_pred CEEEEecCCcCCCCHHHHHHHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccccc
Confidence 89999999999999999999999886543 322 22222 221 2211 33464 2 23232 22
Q ss_pred Ceeeec-CCcccChHHHHHHHHHHHhc----CCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcccCC
Q 028320 135 TLWEMQ-TPQVIKPDLLKKGFELVNRE----GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSES 209 (210)
Q Consensus 135 ~~~~~~-~P~~f~~~~l~~~~~~~~~~----~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~~~ 209 (210)
.++..+ .-++|+.+.|. .+.....+ .+|++|-. +.+.|.++..+..+...++||||+||+.++++++++..|
T Consensus 217 ~i~~~n~Giy~f~~~~L~-~l~~l~~~n~e~e~yLtdl~--~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~~~~ 293 (293)
T PLN02917 217 FPYLLHLGIQSYDAKFLK-IYPELPPTPLQLEEDLEQLK--VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRERNIS 293 (293)
T ss_pred cceEEEEEEEEeCHHHHH-HHHcCCCCcccchhccHHHH--HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 123333 34789988888 55544332 25677654 447888888776666788999999999999999887654
No 16
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.88 E-value=5.5e-21 Score=144.39 Aligned_cols=176 Identities=20% Similarity=0.248 Sum_probs=130.1
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccCCCCE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSEL 79 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~~~d~ 79 (210)
.||+|+|+.|+||+.|+++++.+++ +++++||++++............+..+....+ ....++|++.|+.++..+.+.
T Consensus 21 ~~KlLap~~g~plv~~~~~~a~~a~-~~~vivV~g~~~~~~~~a~~~~~~~~~v~npd~~~Gls~Sl~ag~~a~~~~~~~ 99 (199)
T COG2068 21 QPKLLAPLDGKPLVRASAETALSAG-LDRVIVVTGHRVAEAVEALLAQLGVTVVVNPDYAQGLSTSLKAGLRAADAEGDG 99 (199)
T ss_pred CcceecccCCCcHHHHHHHHHHhcC-CCeEEEEeCcchhhHHHhhhccCCeEEEeCcchhhhHhHHHHHHHHhcccCCCe
Confidence 3899999999999999999999886 89999999998433333333333333322222 223489999999999754479
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 159 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~ 159 (210)
++++.+|||+++++++.++++.+.+.+ ..+.|.+. +..| .|..|.+..|..+.+..++
T Consensus 100 v~~~lgDmP~V~~~t~~rl~~~~~~~~--~~v~p~~~-----g~rG---------------~Pv~~~~~~~~~l~~l~GD 157 (199)
T COG2068 100 VVLMLGDMPQVTPATVRRLIAAFRARG--AAVRPVYG-----GARG---------------HPVLLSKDLFPALARLSGD 157 (199)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhccccC--ceeeeecc-----CCcC---------------CceeechhHHHHHhhcCCc
Confidence 999999999999999999999987764 23444432 2224 5888988887554443332
Q ss_pred cCCCCCcHHHHHHhCCCCeEEEec-CCCCccccChhhHHHHHHHhh
Q 028320 160 EGLEVTDDVSIVEHLKHPVYITEG-SYTNIKVTTPDDLLIAERILN 204 (210)
Q Consensus 160 ~~~~~~d~~~~~~~~g~~v~~v~~-~~~~~dIdt~~Dl~~a~~~~~ 204 (210)
+....+++..+.....|+. .....|||||+||..+..++.
T Consensus 158 -----~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~~ 198 (199)
T COG2068 158 -----VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLLR 198 (199)
T ss_pred -----hhHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhhc
Confidence 3356777888888877766 567899999999999998875
No 17
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.84 E-value=5e-19 Score=140.55 Aligned_cols=196 Identities=16% Similarity=0.224 Sum_probs=122.4
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCc-cHHHHHHHHHHcccCCCCEE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK-ERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~-~~~~si~~~l~~~~~~~d~v 80 (210)
+|+|++++|||||+|+++++.+++.+++|+|+++++ .+.+.+++++.++.+..... .....+..++..+. .|.+
T Consensus 18 ~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~~---~i~~~~~~~~~~v~~~~~~~~~g~~~~~~a~~~~~--~d~~ 92 (238)
T PRK13368 18 GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQ---RIEDAVEAFGGKVVMTSDDHLSGTDRLAEVMLKIE--ADIY 92 (238)
T ss_pred CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECChH---HHHHHHHHcCCeEEecCccCCCccHHHHHHHHhCC--CCEE
Confidence 499999999999999999999986689999999764 35677777776654432211 11334667777763 5789
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcC--CeE-Eeeecc------cceE---EccCCCceeeecCc-----cC-eeeecCC
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVG--AAV-LGVPAK------ATIK---EANSESFVVRTLDR-----KT-LWEMQTP 142 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~--~~~-~~~~~~------~~~~---~~~~~g~v~~~~~r-----~~-~~~~~~P 142 (210)
++++||+||+++++++++++.+...+ .++ .+.+.. ++.. ..+++|.+....+. +. ......+
T Consensus 93 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~ 172 (238)
T PRK13368 93 INVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRSPIPSRRDGESARYLK 172 (238)
T ss_pred EEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCEEEeeCCCCCCCCCCCCCceeE
Confidence 99999999999999999999886543 232 232221 1211 22345666433311 11 1101122
Q ss_pred ----cccChHHHHHHHHHHHhcCCC-CCc-HHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHh
Q 028320 143 ----QVIKPDLLKKGFELVNREGLE-VTD-DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 203 (210)
Q Consensus 143 ----~~f~~~~l~~~~~~~~~~~~~-~~d-~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~ 203 (210)
++|+...|.. +......+.. +.. +...+-..|.++..+..+..++|||||+||..|+.++
T Consensus 173 n~giy~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~~ 238 (238)
T PRK13368 173 HVGIYAFRRDVLQQ-FSQLPETPLEQIESLEQLRALEHGEKIRMVEVAATSIGVDTPEDLERVRAIM 238 (238)
T ss_pred EEEEEEeCHHHHHH-HHcCCCChhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHhC
Confidence 6677666554 2211101110 111 1111223677787776767899999999999999864
No 18
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.82 E-value=2e-18 Score=137.22 Aligned_cols=197 Identities=16% Similarity=0.207 Sum_probs=126.3
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCC-ccHHHHHHHHHHcccCCCCEE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-KERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~-~~~~~si~~~l~~~~~~~d~v 80 (210)
||+|++++|||||+|+++++.+++.+++|+|+++++ .+.+.+.+++..+.+.... .....++..++..+..+.+.+
T Consensus 17 ~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~~---~i~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~d~v 93 (239)
T cd02517 17 GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDDE---RIADAVESFGGKVVMTSPDHPSGTDRIAEVAEKLDADDDIV 93 (239)
T ss_pred CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCcH---HHHHHHHHcCCEEEEcCcccCchhHHHHHHHHhcCCCCCEE
Confidence 799999999999999999999885589999998763 3566666677655443321 122345777777765334789
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc-CC--eEEeeecccce---------EEccCCCceeeecC---cc-------Ceee
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRV-GA--AVLGVPAKATI---------KEANSESFVVRTLD---RK-------TLWE 138 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~-~~--~~~~~~~~~~~---------~~~~~~g~v~~~~~---r~-------~~~~ 138 (210)
+++.||+||+++++++++++.+... ++ ++++.++.++. ...+++|.+..... .+ ....
T Consensus 94 lv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 173 (239)
T cd02517 94 VNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRSPIPYPRDSSEDFPYY 173 (239)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEEEecCCCCCCCCCCCCCCcee
Confidence 9999999999999999999887654 33 44555654321 12244565542211 00 0111
Q ss_pred ec-CCcccChHHHHHHHHHHHhcCCCCCcHHHHH--HhCCCCeEEEecCCCCccccChhhHHHHHHH
Q 028320 139 MQ-TPQVIKPDLLKKGFELVNREGLEVTDDVSIV--EHLKHPVYITEGSYTNIKVTTPDDLLIAERI 202 (210)
Q Consensus 139 ~~-~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~--~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~ 202 (210)
.. .-+.|+...+..+... ....++.++...++ ...|.++..+..+..+++||||+||..|+++
T Consensus 174 ~~~Giy~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~~ 239 (239)
T cd02517 174 KHIGIYAYRRDFLLRFAAL-PPSPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEAL 239 (239)
T ss_pred EEEEEEEECHHHHHHHHhC-CCchhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHhC
Confidence 22 2256676665554332 11223445443332 3467778776555569999999999999864
No 19
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.81 E-value=1.9e-18 Score=136.20 Aligned_cols=194 Identities=16% Similarity=0.164 Sum_probs=133.8
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
+||+|++++|+|||+|+++++.+++ +++++|+++++. +.+.+.+.++++.+.......+..+++.+|+..++.+.+.+
T Consensus 16 ~pK~l~~v~gkpli~~~i~~l~~~~-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~g~~~ai~~a~~~~~~~~~~v 93 (229)
T cd02540 16 LPKVLHPLAGKPMLEHVLDAARALG-PDRIVVVVGHGA-EQVKKALANPNVEFVLQEEQLGTGHAVKQALPALKDFEGDV 93 (229)
T ss_pred CChhcceeCCccHHHHHHHHHHhCC-CCeEEEEECCCH-HHHHHHhCCCCcEEEECCCCCCCHHHHHHHHHhhccCCCeE
Confidence 4899999999999999999999986 899999998875 56777776655443222223345889999999886335789
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccce----EEccCCCceeeecCccCe-------eeecC-CcccC
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATI----KEANSESFVVRTLDRKTL-------WEMQT-PQVIK 146 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~~~----~~~~~~g~v~~~~~r~~~-------~~~~~-P~~f~ 146 (210)
++++||+||++.+.++++++.+.+.+ .++++.+..++. ...+++|.+..+.++... ...++ .+.|+
T Consensus 94 li~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~ek~~~~~~~~~~~~~~~giy~~~ 173 (229)
T cd02540 94 LVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGNGKVLRIVEEKDATEEEKAIREVNAGIYAFD 173 (229)
T ss_pred EEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcCCCCEEEEEECCCCChHHHhhceEEeEEEEEE
Confidence 99999999999999999999886643 344555554441 112445667655543211 22333 57788
Q ss_pred hHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEec--CCCCccccChhhH
Q 028320 147 PDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDL 196 (210)
Q Consensus 147 ~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~--~~~~~dIdt~~Dl 196 (210)
...+...+..... .++++++....+...|.++..... ....++|+||.||
T Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 174 AEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred HHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 7776666654322 124466665666667777776544 4689999999985
No 20
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.79 E-value=1.1e-17 Score=127.61 Aligned_cols=168 Identities=18% Similarity=0.224 Sum_probs=110.5
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccCCCCEE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~~~d~v 80 (210)
||+|++++|+|||+|+++++..++ +++|+||++++.. ...+.+..++..+..... ..+...++..|++.+....+.+
T Consensus 17 ~K~l~~~~g~~li~~~i~~l~~~~-~~~i~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~~G~~~~i~~al~~~~~~~~~v 94 (186)
T cd04182 17 NKLLLPLDGKPLLRHALDAALAAG-LSRVIVVLGAEAD-AVRAALAGLPVVVVINPDWEEGMSSSLAAGLEALPADADAV 94 (186)
T ss_pred CceeCeeCCeeHHHHHHHHHHhCC-CCcEEEECCCcHH-HHHHHhcCCCeEEEeCCChhhCHHHHHHHHHHhccccCCEE
Confidence 799999999999999999999874 8999999988752 333444444433211111 2345788999999885346889
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE 160 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~ 160 (210)
+++.||+||++++.++++++.+...+..+ ++|..+. ..+ .|-+|+...+..+.+..+
T Consensus 95 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~-v~~~~~g-----~~~---------------~P~~~~~~~~~~l~~~~g-- 151 (186)
T cd04182 95 LILLADQPLVTAETLRALIDAFREDGAGI-VAPVYQG-----RRG---------------HPVLFPRSLFPELLALSG-- 151 (186)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHhCCCeE-EEEecCC-----ccC---------------CCeeECHHHHHHHHccCC--
Confidence 99999999999999999999876543322 2332211 012 466777665544322111
Q ss_pred CCCCCcHHHHHHhCCCCeE-EEecCCCCccccChhhHH
Q 028320 161 GLEVTDDVSIVEHLKHPVY-ITEGSYTNIKVTTPDDLL 197 (210)
Q Consensus 161 ~~~~~d~~~~~~~~g~~v~-~v~~~~~~~dIdt~~Dl~ 197 (210)
-.....++...+.... .+......++||||+||+
T Consensus 152 ---~~g~~~~~~~~~~~~~~~~~~~~~~~nint~~d~~ 186 (186)
T cd04182 152 ---DKGARSLLRAHPDRVVVEVDDPGVLIDIDTPEDLR 186 (186)
T ss_pred ---ChhHHHHHHhCcccEEEEeCCCCcccCCCCHHHhC
Confidence 1223455555554432 334445668999999984
No 21
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.78 E-value=3.5e-17 Score=130.49 Aligned_cols=197 Identities=15% Similarity=0.186 Sum_probs=122.6
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCc-cHHHHHHHHHHccc-CCCCE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK-ERQDSVYSGLQEVD-FNSEL 79 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~-~~~~si~~~l~~~~-~~~d~ 79 (210)
+|+|++++|+|||+|+++++.++ .+++|+|+++++ .+.+.+.+++..+.+..+.. ....++..++..+. .+.+.
T Consensus 18 ~K~Ll~i~Gkpll~~~l~~l~~~-~i~~ivvv~~~~---~i~~~~~~~~~~v~~~~~~~~~gt~~~~~~~~~~~~~~~~~ 93 (245)
T PRK05450 18 GKPLADIGGKPMIVRVYERASKA-GADRVVVATDDE---RIADAVEAFGGEVVMTSPDHPSGTDRIAEAAAKLGLADDDI 93 (245)
T ss_pred CCcccccCCcCHHHHHHHHHHhc-CCCeEEEECCcH---HHHHHHHHcCCEEEECCCcCCCchHHHHHHHHhcCCCCCCE
Confidence 59999999999999999999988 589999998753 35566666776554432211 11233444554442 23578
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeeccc------c--e-EEccCCCceeeecCc-----c--------C
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKA------T--I-KEANSESFVVRTLDR-----K--------T 135 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~------~--~-~~~~~~g~v~~~~~r-----~--------~ 135 (210)
+++++||+||+++++++++++.+...+ .++.+.+..+ + . ...+++|.+.++... + .
T Consensus 94 vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~g~v~~~~e~~~~~~~~~~~~~~~~ 173 (245)
T PRK05450 94 VVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVVLDADGRALYFSRAPIPYGRDAFADSAPT 173 (245)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEEeCCCCcEEEecCCCCCCCCCccccccCc
Confidence 999999999999999999999886543 3444444421 1 1 113556666532211 0 0
Q ss_pred eeeec-CCcccChHHHHHHHHHHHhcCCCCCcHHHH--HHhCCCCeEEEecC-CCCccccChhhHHHHHHHh
Q 028320 136 LWEMQ-TPQVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYITEGS-YTNIKVTTPDDLLIAERIL 203 (210)
Q Consensus 136 ~~~~~-~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~--~~~~g~~v~~v~~~-~~~~dIdt~~Dl~~a~~~~ 203 (210)
..... .-+.|....+..+... ....++.++.... +...|.++..+..+ ..+++||||+||..|++.+
T Consensus 174 ~~~~~~Giy~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 174 PVYRHIGIYAYRRGFLRRFVSL-PPSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred cccEEEEEEecCHHHHHHHHhC-CCCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 11111 2255666655543331 1122223333221 22467788876665 4899999999999999875
No 22
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.78 E-value=1.6e-17 Score=131.55 Aligned_cols=175 Identities=21% Similarity=0.254 Sum_probs=111.1
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHH-HHHHHHHHcccCCCCE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQ-DSVYSGLQEVDFNSEL 79 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~-~si~~~l~~~~~~~d~ 79 (210)
+|+|++++|+|||+|+++++.+++.+++|+|+++.+.. +.+.+.+.++++ .++.++.... .....+++.. +.+.
T Consensus 15 ~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~~v--~~v~~~~~~~l~~~~~~~~~~--~~d~ 90 (233)
T cd02518 15 GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKLGV--KVFRGSEEDVLGRYYQAAEEY--NADV 90 (233)
T ss_pred CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHcCC--eEEECCchhHHHHHHHHHHHc--CCCE
Confidence 59999999999999999999988768999999997742 345555555554 3444543322 2222233322 3689
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCc-----ccChHHHHHHH
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ-----VIKPDLLKKGF 154 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~-----~f~~~~l~~~~ 154 (210)
+++++||+||+++++++++++.+...+..+.+... ..| .|. .|....+.++.
T Consensus 91 vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~--------~~g---------------~Pv~~~~~~~~~~~~~~l~ 147 (233)
T cd02518 91 VVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTL--------PRT---------------YPDGLDVEVFTRDALERAA 147 (233)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEecCC--------CCC---------------CCCceEEEEEEHHHHHHHH
Confidence 99999999999999999999988765443332110 112 243 56655556555
Q ss_pred HHHHhcCCCCCcH-HHHHHhCCCCeEE--EecCC-----CCccccChhhHHHHHHHhhc
Q 028320 155 ELVNREGLEVTDD-VSIVEHLKHPVYI--TEGSY-----TNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 155 ~~~~~~~~~~~d~-~~~~~~~g~~v~~--v~~~~-----~~~dIdt~~Dl~~a~~~~~~ 205 (210)
...++.|. .+. ...++++...+.. +..+. ..+|||||+||+.++.+++.
T Consensus 148 ~~~gd~g~--r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~DiDt~eD~~~~~~~~~~ 204 (233)
T cd02518 148 AEADDPYE--REHVTPYIRRHPELFRIGYLEAPPDRLSDLRLTVDTPEDFELIKEIYEA 204 (233)
T ss_pred HhCCChhh--hcCCCHHHHhChHHeEEeeecCCcccCcCceEecCCHHHHHHHHHHHHH
Confidence 44332221 000 0123444444443 33332 26899999999999998763
No 23
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.77 E-value=1.9e-17 Score=126.70 Aligned_cols=170 Identities=19% Similarity=0.214 Sum_probs=109.0
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccCCCCE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSEL 79 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~~~d~ 79 (210)
.||+|++++|+|||.|+++++.+++ +++|+||++++....+..++.++++.+..... ..+...|+..|++. ..+.+.
T Consensus 15 ~~K~ll~~~g~pll~~~i~~l~~~~-~~~iivv~~~~~~~~~~~~~~~~~v~~v~~~~~~~g~~~si~~~l~~-~~~~~~ 92 (188)
T TIGR03310 15 QNKLLLPYKGKTILEHVVDNALRLF-FDEVILVLGHEADELVALLANHSNITLVHNPQYAEGQSSSIKLGLEL-PVQSDG 92 (188)
T ss_pred CCceecccCCeeHHHHHHHHHHHcC-CCcEEEEeCCcHHHHHHHhccCCCeEEEECcChhcCHHHHHHHHhcC-CCCCCE
Confidence 3899999999999999999998875 89999999987633233333334433222111 13457889999872 223688
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 159 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~ 159 (210)
+++++||+||++++.++++++.+...+..+ +++.... ..+ .|-+|+...+..+...
T Consensus 93 vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~-~~~~~~~-----~~~---------------~Pl~~~~~~~~~l~~~--- 148 (188)
T TIGR03310 93 YLFLLGDQPFVTPDIIQLLLEAFALKNDEI-VVPLYKG-----KRG---------------HPVLFPRKLFPELLAL--- 148 (188)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHhCCCcE-EEeecCC-----ccC---------------CCEEECHHHHHHHHhC---
Confidence 999999999999999999999876554322 2222110 012 3666776665543321
Q ss_pred cCCCCCcHHHHHHhCCCCeEEEec--CCCCccccChhhHHH
Q 028320 160 EGLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDLLI 198 (210)
Q Consensus 160 ~~~~~~d~~~~~~~~g~~v~~v~~--~~~~~dIdt~~Dl~~ 198 (210)
.+ -.....++++....+..+.. ....++||||+||+.
T Consensus 149 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~nint~~d~~~ 187 (188)
T TIGR03310 149 TG--DTGGRQILRELPHEVKYVEVKDPGILFDIDTPEDYQA 187 (188)
T ss_pred CC--CccHHHHHHhCcccEEEEEcCCCceeECCCCHHHHhh
Confidence 11 12234455555434444433 345689999999974
No 24
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.77 E-value=3.7e-17 Score=141.51 Aligned_cols=200 Identities=15% Similarity=0.156 Sum_probs=133.6
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d 78 (210)
+||+|+|++|||||+|+++++.+++ +++++|++++.. +.+.+.+.. .+.++.. ..+..+++..+++.++...+
T Consensus 20 ~pK~ll~i~Gkpli~~~l~~l~~~g-i~~iivvv~~~~-~~i~~~~~~---~~~~~~~~~~~g~~~al~~a~~~l~~~~d 94 (458)
T PRK14354 20 LPKVLHKVCGKPMVEHVVDSVKKAG-IDKIVTVVGHGA-EEVKEVLGD---RSEFALQEEQLGTGHAVMQAEEFLADKEG 94 (458)
T ss_pred CChhhCEeCCccHHHHHHHHHHhCC-CCeEEEEeCCCH-HHHHHHhcC---CcEEEEcCCCCCHHHHHHHHHHHhcccCC
Confidence 5999999999999999999999886 899999988875 445554432 2233222 22347889999998863247
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc--e--EEccCCCceeeecCccC-------eeeecC-Ccc
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT--I--KEANSESFVVRTLDRKT-------LWEMQT-PQV 144 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~--~--~~~~~~g~v~~~~~r~~-------~~~~~~-P~~ 144 (210)
.++++++|+||+++++++++++.+.+.++ .+.+.+..++ . ...+++|.+..+.++.. .+..++ ++.
T Consensus 95 ~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d~~~~V~~~~ek~~~~~~~~~~~~~~~Giy~ 174 (458)
T PRK14354 95 TTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRNENGEVEKIVEQKDATEEEKQIKEINTGTYC 174 (458)
T ss_pred eEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEcCCCCEEEEEECCCCChHHhcCcEEEEEEEE
Confidence 89999999999999999999998866543 2333333333 1 11244566665544321 223343 577
Q ss_pred cChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEec--CCCCccccChhhHHHHHHHhhc
Q 028320 145 IKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 145 f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~--~~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
|+.+.|...+..... .++++++....+...|.++..+.. ....++|||++||+.|+.++..
T Consensus 175 f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~ 241 (458)
T PRK14354 175 FDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRR 241 (458)
T ss_pred EEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHH
Confidence 887766666544321 123445545555556777765543 3578999999999999987653
No 25
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.76 E-value=2.7e-17 Score=142.30 Aligned_cols=204 Identities=14% Similarity=0.173 Sum_probs=132.2
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccC-CCCE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF-NSEL 79 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~-~~d~ 79 (210)
.||+|++++|||||+|+++++...+ +++|+|++++.. +.+.+.+.+.+..+.......+...++..+++.++. +.+.
T Consensus 23 ~pK~l~~i~gkpli~~~l~~l~~~~-~~~iivv~~~~~-~~i~~~~~~~~~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~ 100 (456)
T PRK14356 23 KPKVLQTLLGEPMLRFVYRALRPLF-GDNVWTVVGHRA-DMVRAAFPDEDARFVLQEQQLGTGHALQCAWPSLTAAGLDR 100 (456)
T ss_pred CCceecccCCCcHHHHHHHHHHhcC-CCcEEEEECCCH-HHHHHhccccCceEEEcCCCCCcHHHHHHHHHHHhhcCCCc
Confidence 4999999999999999999998875 789999998875 445555443332222212222346789999988853 3578
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceE--E-ccCCCceeeecCccCee---------eec-CCcccC
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK--E-ANSESFVVRTLDRKTLW---------EMQ-TPQVIK 146 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~--~-~~~~g~v~~~~~r~~~~---------~~~-~P~~f~ 146 (210)
++++.||+||+++++++.+++.....++++...++.++.. . ..++|.+.++.++.... ... .-+.|+
T Consensus 101 vlv~~gD~P~i~~~~i~~li~~~~~~~~~l~~~~~~~~~~~g~v~~~~g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~ 180 (456)
T PRK14356 101 VLVVNGDTPLVTTDTIDDFLKEAAGADLAFMTLTLPDPGAYGRVVRRNGHVAAIVEAKDYDEALHGPETGEVNAGIYYLR 180 (456)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEcCCeEEEEEECCCCChHHhhhhcCeEEEEEEEEE
Confidence 9999999999999999999987664445555555554421 1 12356666554432211 000 013355
Q ss_pred hHHHHHHHHHHH----hcCCCCCcHHHHHHhCCCCeEEEecC--CCCccccChhhHHHHHHHhhcc
Q 028320 147 PDLLKKGFELVN----REGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 147 ~~~l~~~~~~~~----~~~~~~~d~~~~~~~~g~~v~~v~~~--~~~~dIdt~~Dl~~a~~~~~~~ 206 (210)
...+..++.... ..++++++....+...|.++...... ..+++||||+||..++.++..+
T Consensus 181 ~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~ 246 (456)
T PRK14356 181 LDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRAR 246 (456)
T ss_pred HHHHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHH
Confidence 554444333221 12245565555555677777766543 3579999999999999998754
No 26
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.76 E-value=1.1e-16 Score=123.38 Aligned_cols=168 Identities=15% Similarity=0.146 Sum_probs=106.8
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe--cCCccHHHHHHHHHHcccCCCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~--~~~~~~~~si~~~l~~~~~~~d 78 (210)
.||+|++++|+|||+|+++.+. ..+++|+|+++.+. .. ...++..+..- .+..+...|+..|++..+ .+
T Consensus 20 ~~K~ll~~~g~~ll~~~i~~l~--~~~~~i~vv~~~~~-~~----~~~~~~~~v~~~~~~~~g~~~~i~~~l~~~~--~~ 90 (193)
T PRK00317 20 VDKGLQELNGKPLIQHVIERLA--PQVDEIVINANRNL-AR----YAAFGLPVIPDSLADFPGPLAGILAGLKQAR--TE 90 (193)
T ss_pred CCCceeEECCEEHHHHHHHHHh--hhCCEEEEECCCCh-HH----HHhcCCcEEeCCCCCCCCCHHHHHHHHHhcC--CC
Confidence 3899999999999999999998 35899999987653 21 22344333211 122445788999998754 68
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCc--ccChHHHHHHHHH
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFEL 156 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~--~f~~~~l~~~~~~ 156 (210)
.+++++||+||++++.++.+++.+...+..+.+ +.. ++.. .|- .|+...+..+...
T Consensus 91 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~-~~~--------~~~~-------------~Pl~~~~~~~~~~~l~~~ 148 (193)
T PRK00317 91 WVLVVPCDTPFIPPDLVARLAQAAGKDDADVAW-AHD--------GGRL-------------HPTFALYSVALLPDLEAY 148 (193)
T ss_pred eEEEEcCCcCCCCHHHHHHHHHhhhcCCCcEEE-Eee--------CCcc-------------eeEEEEEeHHHHHHHHHH
Confidence 999999999999999999999976544333222 111 1111 354 5666555543322
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEe-cCCCCccccChhhHHHHHHH
Q 028320 157 VNREGLEVTDDVSIVEHLKHPVYITE-GSYTNIKVTTPDDLLIAERI 202 (210)
Q Consensus 157 ~~~~~~~~~d~~~~~~~~g~~v~~v~-~~~~~~dIdt~~Dl~~a~~~ 202 (210)
. ..| -..-..+++..+.....+. .+...+|||||+||+.+++.
T Consensus 149 l-~~g--~~~~~~~l~~~~~~~v~~~~~~~~~~dinTped~~~~~~~ 192 (193)
T PRK00317 149 L-AAG--ERKVMAFYARHGGVAVDFSDPKDAFFNINTPEDLAQLEEL 192 (193)
T ss_pred H-HcC--CchHHHHHHHCCcEEEeCCCCCCccCcCCCHHHHHHHHhh
Confidence 1 112 0123345555553222233 23456899999999998764
No 27
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.76 E-value=4.4e-17 Score=140.63 Aligned_cols=204 Identities=15% Similarity=0.131 Sum_probs=133.0
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d 78 (210)
.||+|++++|||||+|+++++..++ +++++|++++.. +.+.+.+.+++..+.+... ..+..+++..++..++...+
T Consensus 23 ~pK~ll~v~gkpli~~~l~~l~~~g-i~~ivvv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~G~~~sl~~a~~~l~~~~~ 100 (446)
T PRK14353 23 LPKVLHPVAGRPMLAHVLAAAASLG-PSRVAVVVGPGA-EAVAAAAAKIAPDAEIFVQKERLGTAHAVLAAREALAGGYG 100 (446)
T ss_pred CCcccCEECCchHHHHHHHHHHhCC-CCcEEEEECCCH-HHHHHHhhccCCCceEEEcCCCCCcHHHHHHHHHHHhccCC
Confidence 4999999999999999999999886 899999999876 5566666555433332222 22347888889888753246
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHh-cCCeEEeeecccceEE---ccCCCceeeecCccCe-------eeecC-CcccC
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVPAKATIKE---ANSESFVVRTLDRKTL-------WEMQT-PQVIK 146 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~-~~~~~~~~~~~~~~~~---~~~~g~v~~~~~r~~~-------~~~~~-P~~f~ 146 (210)
.+++++||+||++++.++.+++.... .++++.+.+..++..+ ..++|.+..+.++... ....+ =+.|+
T Consensus 101 ~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~g~~~~~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~ 180 (446)
T PRK14353 101 DVLVLYGDTPLITAETLARLRERLADGADVVVLGFRAADPTGYGRLIVKGGRLVAIVEEKDASDEERAITLCNSGVMAAD 180 (446)
T ss_pred CEEEEeCCcccCCHHHHHHHHHhHhcCCcEEEEEEEeCCCCcceEEEECCCeEEEEEECCCCChHHhhceEEEEEEEEEE
Confidence 67889999999999999999985543 2345555565543211 1134556544321100 00001 13344
Q ss_pred hHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCC-CCccccChhhHHHHHHHhhcc
Q 028320 147 PDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 147 ~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~~-~~~dIdt~~Dl~~a~~~~~~~ 206 (210)
...|..+++.... .++++++....+...|.++..+..+. .+.+||||+||..|+.+++.+
T Consensus 181 ~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~ 245 (446)
T PRK14353 181 GADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQAR 245 (446)
T ss_pred HHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHH
Confidence 4455555544321 22455666666667888888877653 467999999999999877643
No 28
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.75 E-value=7.7e-17 Score=123.85 Aligned_cols=168 Identities=15% Similarity=0.179 Sum_probs=107.3
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChH--HHHHHH-hhcCCcEEEecCC-ccHHHHHHHHHHccc-CC
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD--IFEETK-EKINVDLKFSLPG-KERQDSVYSGLQEVD-FN 76 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~--~i~~~~-~~~~~~v~~~~~~-~~~~~si~~~l~~~~-~~ 76 (210)
||+|++++|+|||+|+++.+.+.. +++|+||++++... .+.+.. ...+..+....+. .++.+|+..|++++. .+
T Consensus 17 ~K~ll~~~g~~ll~~~i~~~~~~~-~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~si~~gl~~~~~~~ 95 (190)
T TIGR03202 17 NKLALPLGETTLGSASLKTALSSR-LSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRDACEGQAHSLKCGLRKAEAMG 95 (190)
T ss_pred CceeceeCCccHHHHHHHHHHhCC-CCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCChhhhHHHHHHHHHHHhccCC
Confidence 799999999999999999887774 89999999887521 111111 1122233333332 245889999999874 24
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHH
Q 028320 77 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFEL 156 (210)
Q Consensus 77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~ 156 (210)
.++++++.||+||+++++++++++.+......+. ++..+ +..| .|-+|+...+..+...
T Consensus 96 ~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~-~~~~~-----g~~~---------------~p~~~~~~~~~~l~~~ 154 (190)
T TIGR03202 96 ADAVVILLADQPFLTADVINALLALAKRRPDDYV-AASFK-----GKPR---------------PPILFSKSLFPKLKAL 154 (190)
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEE-EEecC-----CCCC---------------CCeEEcHHHHHHHHhC
Confidence 6899999999999999999999998765443222 22211 1112 4667777665543321
Q ss_pred HHhcCCCCCcHHHHHHhCCCCe-EEEecCCCCccccChhhH
Q 028320 157 VNREGLEVTDDVSIVEHLKHPV-YITEGSYTNIKVTTPDDL 196 (210)
Q Consensus 157 ~~~~~~~~~d~~~~~~~~g~~v-~~v~~~~~~~dIdt~~Dl 196 (210)
.++ .+...++++.+... ..+......+|||||+||
T Consensus 155 ~~~-----~g~~~~l~~~~~~~~~~~~~~~~~~dint~ed~ 190 (190)
T TIGR03202 155 KGD-----EGARALLRKDKSGLALPVADASAFFDIDTKEDY 190 (190)
T ss_pred CCC-----ccHHHHHhhCCcceEEecCCCccccCCCChhhC
Confidence 111 23455665554322 223434456899999996
No 29
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.75 E-value=1.5e-16 Score=121.71 Aligned_cols=165 Identities=12% Similarity=0.072 Sum_probs=104.0
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE--ecCCccHHHHHHHHHHcccCCCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF--SLPGKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~--~~~~~~~~~si~~~l~~~~~~~d 78 (210)
.||+|++++|+|||.|+++++.. .+++|+|+++++... .....++..+.. ..++.++.+|+..|++.++ .+
T Consensus 17 ~~K~l~~i~g~pll~~~l~~l~~--~~~~ivv~~~~~~~~---~~~~~~~~~~i~~~~~~~~g~~~si~~al~~~~--~~ 89 (186)
T TIGR02665 17 RDKGLVELGGKPLIEHVLARLRP--QVSDLAISANRNPER---YAQAGFGLPVVPDALADFPGPLAGILAGLRWAG--TD 89 (186)
T ss_pred CCCceeEECCEEHHHHHHHHHHh--hCCEEEEEcCCCHHH---HhhccCCCcEEecCCCCCCCCHHHHHHHHHhcC--CC
Confidence 38999999999999999999974 489999998765421 111223333322 1334567899999999885 57
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCc--ccChHHHHHHHHH
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFEL 156 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~--~f~~~~l~~~~~~ 156 (210)
.+++++||+||++++.++.+++.+...++.+.+ +..+ ..+ .|- .|+...+..+.+.
T Consensus 90 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~-~~~~------~~~---------------~P~~~~~~~~~~~~l~~~ 147 (186)
T TIGR02665 90 WVLTVPCDTPFLPEDLVARLAAALEASDADIAV-AHDG------GRW---------------HPVFALWPVALAPDLEAF 147 (186)
T ss_pred eEEEEecCCCcCCHHHHHHHHHHhhccCCcEEE-EecC------Ccc---------------cCEEEEEhHHHHHHHHHH
Confidence 899999999999999999999987654443322 2211 012 354 5666554443322
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEecC-CCCccccChhhHH
Q 028320 157 VNREGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLL 197 (210)
Q Consensus 157 ~~~~~~~~~d~~~~~~~~g~~v~~v~~~-~~~~dIdt~~Dl~ 197 (210)
. .+|- ..-..++++.+.....+... ...+|||||+||+
T Consensus 148 ~-~~g~--~~~~~~l~~~~~~~i~~~~~~~~~~nint~~d~~ 186 (186)
T TIGR02665 148 L-AAGE--RRVRRFYARHGAVAVDFSDSPDAFANLNTPEDLA 186 (186)
T ss_pred H-HcCC--chHHHHHHHCCcEEEeCCCCCcccCCCCCHHHhC
Confidence 1 1221 12233344444222223333 3458999999984
No 30
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.74 E-value=7.8e-17 Score=138.43 Aligned_cols=197 Identities=15% Similarity=0.169 Sum_probs=127.9
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCC----ccHHHHHHHHHHcccCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG----KERQDSVYSGLQEVDFN 76 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~----~~~~~si~~~l~~~~~~ 76 (210)
+||+|+|++|+|||+|+++++.++ +++|+|+++++. +.+.+.+.++...+.++... .+..+++.. +...
T Consensus 20 ~pK~Llpi~gkPli~~~i~~l~~~--~~~i~Ivv~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~gt~~al~~----~~~~ 92 (430)
T PRK14359 20 LPKVLHTICGKPMLFYILKEAFAI--SDDVHVVLHHQK-ERIKEAVLEYFPGVIFHTQDLENYPGTGGALMG----IEPK 92 (430)
T ss_pred CCceeCEECCccHHHHHHHHHHHc--CCcEEEEECCCH-HHHHHHHHhcCCceEEEEecCccCCCcHHHHhh----cccC
Confidence 599999999999999999999875 588999998875 56667666553334444221 112444443 3223
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceE--Ec-cCCCceeeecCccCe-------eeec-CCccc
Q 028320 77 SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK--EA-NSESFVVRTLDRKTL-------WEMQ-TPQVI 145 (210)
Q Consensus 77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~--~~-~~~g~v~~~~~r~~~-------~~~~-~P~~f 145 (210)
.|.+++++||+||++++.++++++. ..+..+++.++.++.. .+ .++|.+..+.++... .... ..+.|
T Consensus 93 ~d~vlv~~gD~p~~~~~~l~~l~~~--~~~~~v~~~~~~~~~~~g~v~~d~g~v~~i~e~~~~~~~~~~~~~~~~Giyif 170 (430)
T PRK14359 93 HERVLILNGDMPLVEKDELEKLLEN--DADIVMSVFHLADPKGYGRVVIENGQVKKIVEQKDANEEELKIKSVNAGVYLF 170 (430)
T ss_pred CCeEEEEECCccCCCHHHHHHHHhC--CCCEEEEEEEcCCCccCcEEEEcCCeEEEEEECCCCCcccccceEEEeEEEEE
Confidence 5789999999999999999887742 2233455555544421 11 135666554432211 1111 23667
Q ss_pred ChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecC-CCCccccChhhHHHHHHHhhcc
Q 028320 146 KPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 146 ~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~-~~~~dIdt~~Dl~~a~~~~~~~ 206 (210)
+...|..+...... .+++++|....+...|.++..+..+ ..+.|||||+||..|+.++..+
T Consensus 171 ~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~ 236 (430)
T PRK14359 171 DRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQER 236 (430)
T ss_pred EHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHH
Confidence 77776655443221 2356777766666778888776654 4678999999999999988754
No 31
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.74 E-value=2e-16 Score=136.57 Aligned_cols=202 Identities=16% Similarity=0.141 Sum_probs=134.4
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
+||+|++++|+|||+|+++++.+++ +++++|+++++. +.+.+.+.+++..+.......+..+++++++..++. .+.+
T Consensus 18 ~pK~l~~i~gkpli~~~l~~l~~~g-~~~iiiv~~~~~-~~i~~~~~~~~i~~~~~~~~~G~~~ai~~a~~~l~~-~~~~ 94 (451)
T TIGR01173 18 LPKVLHPLAGKPMLEHVIDAARALG-PQKIHVVYGHGA-EQVRKALANRDVNWVLQAEQLGTGHAVLQALPFLPD-DGDV 94 (451)
T ss_pred CchhhceeCCccHHHHHHHHHHhCC-CCeEEEEECCCH-HHHHHHhcCCCcEEEEcCCCCchHHHHHHHHHhcCC-CCcE
Confidence 5999999999999999999999986 799999998875 556776666554332211112347889999999853 3678
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc--e--EEccCCCceeeecCccCe-------eeec-CCcccChH
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT--I--KEANSESFVVRTLDRKTL-------WEMQ-TPQVIKPD 148 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~--~--~~~~~~g~v~~~~~r~~~-------~~~~-~P~~f~~~ 148 (210)
+++.||+||+++++++++++.+...+.++.+.+..++ + ...+++|.+..+.++... .... ..+.|+..
T Consensus 95 lv~~~D~p~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~ 174 (451)
T TIGR01173 95 LVLYGDVPLISAETLERLLEAHRQNGITLLTAKLPDPTGYGRIIRENDGKVTAIVEDKDANAEQKAIKEINTGVYVFDGA 174 (451)
T ss_pred EEEECCcCCcCHHHHHHHHHHHhhCCEEEEEEecCCCCCCCEEEEcCCCCEEEEEEcCCCChHHhcCcEEEEEEEEEeHH
Confidence 8899999999999999999888665554555555333 1 123445666655443211 1111 23667766
Q ss_pred HHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecC--CCCccccChhhHHHHHHHhhc
Q 028320 149 LLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 149 ~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~--~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
.|...+..... .++++++....+...|.++...+.+ ..+++++||+|+..++.++..
T Consensus 175 ~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~ 237 (451)
T TIGR01173 175 ALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQR 237 (451)
T ss_pred HHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHH
Confidence 66555543211 1233444444444567777766543 358999999999998877654
No 32
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.74 E-value=8.6e-17 Score=138.95 Aligned_cols=200 Identities=14% Similarity=0.112 Sum_probs=132.3
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d 78 (210)
+||+|+|++|+|||+|+++++.+++ +++++|++++.. +.+.+.+++++ .+.++.. ..+..+++..+++.++...+
T Consensus 19 ~pK~ll~v~gkpli~~~l~~l~~~g-~~~iivvv~~~~-~~i~~~~~~~~-~i~~v~~~~~~G~~~sv~~~~~~l~~~~~ 95 (450)
T PRK14360 19 LPKVLHPLGGKSLVERVLDSCEELK-PDRRLVIVGHQA-EEVEQSLAHLP-GLEFVEQQPQLGTGHAVQQLLPVLKGFEG 95 (450)
T ss_pred CChhcCEECChhHHHHHHHHHHhCC-CCeEEEEECCCH-HHHHHHhcccC-CeEEEEeCCcCCcHHHHHHHHHHhhccCC
Confidence 4999999999999999999999886 788888888765 45666665433 2344422 12236888889888863335
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEE--eeecccce----EEccCCCceeeecCccCeeeec--------CCcc
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVL--GVPAKATI----KEANSESFVVRTLDRKTLWEMQ--------TPQV 144 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~--~~~~~~~~----~~~~~~g~v~~~~~r~~~~~~~--------~P~~ 144 (210)
.++++++|+||++++.++++++.+...++.++ ..+..++. ...+++|.+.++.++..+...+ ..+.
T Consensus 96 ~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~ 175 (450)
T PRK14360 96 DLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGNNLVEQIVEDRDCTPAQRQNNRINAGIYC 175 (450)
T ss_pred cEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEECCCCCEEEEEECCCCChhHhcCcEEEEEEEE
Confidence 67889999999999999999998877665332 23333332 1235567776665543222111 2477
Q ss_pred cChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320 145 IKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 145 f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
|+...|.+++..... .+++++|....+... .-..+.+.....+|||++|++.++.++..
T Consensus 176 f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~~~--~~~~v~~~~~~~~i~~~~dl~~~~~~l~~ 238 (450)
T PRK14360 176 FNWPALAEVLPKLSSNNDQKEYYLTDTVSLLDPV--MAVEVEDYQEINGINDRKQLAQCEEILQN 238 (450)
T ss_pred EEHHHHHHHHhhccccccCCceeHHHHHHHHhhc--eEEecCCHHHhhcCCCHHHHHHHHHHHHH
Confidence 887777776654322 124566654444321 01114445577999999999999998764
No 33
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.73 E-value=3.5e-16 Score=119.15 Aligned_cols=92 Identities=18% Similarity=0.290 Sum_probs=73.7
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-CCccHHHHHHHHHHcccCCCCEE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-~~~~~~~si~~~l~~~~~~~d~v 80 (210)
||++++++|+|||+|+++++.++ +++|+|+++++... ...++..+..-. .+.+...|+..|++.++ .+.+
T Consensus 17 ~K~ll~~~g~~ll~~~i~~l~~~--~~~iivv~~~~~~~-----~~~~~~~~v~~~~~~~G~~~si~~~l~~~~--~~~v 87 (181)
T cd02503 17 DKALLELGGKPLLEHVLERLKPL--VDEVVISANRDQER-----YALLGVPVIPDEPPGKGPLAGILAALRAAP--ADWV 87 (181)
T ss_pred CceeeEECCEEHHHHHHHHHHhh--cCEEEEECCCChHH-----HhhcCCcEeeCCCCCCCCHHHHHHHHHhcC--CCeE
Confidence 79999999999999999999875 79999999987521 233443332211 23455899999999885 6889
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH
Q 028320 81 CIHDSARPLVLSKDVQKVLMDA 102 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~ 102 (210)
+++.||+||++++.++.+++.+
T Consensus 88 lv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 88 LVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred EEEeCCcCCCCHHHHHHHHHhh
Confidence 9999999999999999999887
No 34
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.71 E-value=5.1e-16 Score=135.25 Aligned_cols=194 Identities=14% Similarity=0.178 Sum_probs=132.7
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccC-CC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDF-NS 77 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~-~~ 77 (210)
.||+|+|++|+|||+|+++++.+++ +++++|++++.. +.+.+.+.+++..+.++.. ..+..++++.|++.+.. ..
T Consensus 22 ~pK~llpi~gkpli~~~l~~l~~~g-~~~iivvv~~~~-~~i~~~~~~~~~~~~~~~~~~~~Gt~~si~~al~~l~~~~~ 99 (482)
T PRK14352 22 TPKVLHTLAGRSMLGHVLHAAAGLA-PQHLVVVVGHDR-ERVAPAVAELAPEVDIAVQDEQPGTGHAVQCALEALPADFD 99 (482)
T ss_pred CCceeceeCCccHHHHHHHHHHhcC-CCcEEEEECCCH-HHHHHHhhccCCccEEEeCCCCCCcHHHHHHHHHHhccCCC
Confidence 4899999999999999999999885 789999998875 4566655544323333322 12336889999998853 24
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeE--Eeeecccce----EEccCCCceeeecCccC-------eeeecC-Cc
Q 028320 78 ELVCIHDSARPLVLSKDVQKVLMDALRVGAAV--LGVPAKATI----KEANSESFVVRTLDRKT-------LWEMQT-PQ 143 (210)
Q Consensus 78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~--~~~~~~~~~----~~~~~~g~v~~~~~r~~-------~~~~~~-P~ 143 (210)
+.++++.||+||+++++++++++.+...++.+ ...++.++. ...+++|.+.+++++.. ....++ ++
T Consensus 100 ~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~~g~V~~~~EKp~~~~~~~~~~~~~~Giy 179 (482)
T PRK14352 100 GTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQDGEVTAIVEQKDATPSQRAIREVNSGVY 179 (482)
T ss_pred CeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECCCCCEEEEEECCCCCHHHhhcceEEEEEE
Confidence 67899999999999999999999887666543 333444432 11244677776655322 122333 78
Q ss_pred ccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhH
Q 028320 144 VIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDL 196 (210)
Q Consensus 144 ~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl 196 (210)
.|+...|..++..... .+++++|....+...|.++...+.+..+.++.+++++
T Consensus 180 ~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~ 236 (482)
T PRK14352 180 AFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRV 236 (482)
T ss_pred EEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHH
Confidence 8888877776654332 2245677666666777778776666677888777776
No 35
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.71 E-value=1.4e-15 Score=117.85 Aligned_cols=168 Identities=14% Similarity=0.135 Sum_probs=105.5
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC---CccHHHHHHHHHHcccCCCC
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~---~~~~~~si~~~l~~~~~~~d 78 (210)
+|+|++++|+|||+|+++++... +++|+|++++.+ ....... .+ +.++.+ +.+..+|+..|+..++ .+
T Consensus 24 ~K~ll~~~g~~ll~~~i~~l~~~--~~~ivvv~~~~~--~~~~~~~-~~--~~~i~~~~~~~G~~~si~~~l~~~~--~~ 94 (200)
T PRK02726 24 DKALLPWQGVPLLQRVARIAAAC--ADEVYIITPWPE--RYQSLLP-PG--CHWLREPPPSQGPLVAFAQGLPQIK--TE 94 (200)
T ss_pred CceeeEECCEeHHHHHHHHHHhh--CCEEEEECCCHH--HHHhhcc-CC--CeEecCCCCCCChHHHHHHHHHhCC--CC
Confidence 79999999999999999999753 689999887542 2222221 12 334322 2455889999999886 47
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhc-CCeEEeeecccceEEccCCCceeeecCccCeeeecCCc--ccChHHHHHHHH
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRV-GAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFE 155 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~--~f~~~~l~~~~~ 155 (210)
+++++.||+||+++++|+++++.+... +....+.+..+. .+ .|- +|++..+..+..
T Consensus 95 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~------~~---------------~Pl~~~~~~~~~~~l~~ 153 (200)
T PRK02726 95 WVLLLACDLPRLTVDVLQEWLQQLENVPEEAIAALPKQEK------GW---------------EPLCGFYRRRCLPSLEQ 153 (200)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhhcCCCCceEEEecCCC------Cc---------------ccEEeeecHHHHHHHHH
Confidence 899999999999999999999987542 233333332211 11 342 256555444333
Q ss_pred HHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHH
Q 028320 156 LVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERI 202 (210)
Q Consensus 156 ~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~ 202 (210)
. ..+|. ..-..+++..+.....+......++||||+||+.+..+
T Consensus 154 ~-~~~g~--~~l~~~l~~~~~~~v~~~~~~~~~ninTped~~~~~~~ 197 (200)
T PRK02726 154 F-IQQGG--RSFQGWLAQVPVQELALSDPDMLFNCNTPEDLATIQGI 197 (200)
T ss_pred H-HHhCC--ccHHHHHhhCCceEecCCCchhhccCCCHHHHHHHhhc
Confidence 2 22221 11223344443222222333456799999999987764
No 36
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.67 E-value=5.1e-15 Score=128.27 Aligned_cols=202 Identities=19% Similarity=0.179 Sum_probs=130.9
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCC--ccHHHHHHHHHHcccCCCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG--KERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~--~~~~~si~~~l~~~~~~~d 78 (210)
.||+|+|++|+|||+|+++++.+++ ++++++++++.. +.+.+.+.+.+ .+.++... .+..+++..+++.++...+
T Consensus 21 ~pK~l~pi~g~pli~~~l~~l~~~g-i~~iiiv~~~~~-~~i~~~~~~~~-~i~~~~~~~~~Gt~~al~~a~~~l~~~~~ 97 (459)
T PRK14355 21 LVKVMHPLAGRPMVSWPVAAAREAG-AGRIVLVVGHQA-EKVREHFAGDG-DVSFALQEEQLGTGHAVACAAPALDGFSG 97 (459)
T ss_pred CCceeceeCCccHHHHHHHHHHhcC-CCeEEEEECCCH-HHHHHHhccCC-ceEEEecCCCCCHHHHHHHHHHHhhccCC
Confidence 4899999999999999999999986 899999999875 44555554422 34443321 2346789999998864357
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEee--ecccce----EEccCCCceeeecCccC-------eeeecC-Ccc
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGV--PAKATI----KEANSESFVVRTLDRKT-------LWEMQT-PQV 144 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~--~~~~~~----~~~~~~g~v~~~~~r~~-------~~~~~~-P~~ 144 (210)
.++++++|+||+++++++++++.+...++.+++. +..++. ...+++|.+..+.+... .....+ -+.
T Consensus 98 ~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~ 177 (459)
T PRK14355 98 TVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRDADGRVLRIVEEKDATPEERSIREVNSGIYC 177 (459)
T ss_pred cEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEcCCCCEEEEEEcCCCChhHhhccEEEEEEEE
Confidence 8999999999999999999999887665543332 332331 12244566654432110 011111 244
Q ss_pred cChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecCC--CCccccChhhHHHHHHHhhc
Q 028320 145 IKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 145 f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~~--~~~dIdt~~Dl~~a~~~~~~ 205 (210)
|....+...+..... .+++++|....+...|.++...+.+. .+++|+||+||..+..++..
T Consensus 178 ~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~ 244 (459)
T PRK14355 178 VEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRR 244 (459)
T ss_pred EeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHH
Confidence 555544444433211 22445555555555677777655443 48899999999999877664
No 37
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=3.5e-15 Score=117.34 Aligned_cols=199 Identities=18% Similarity=0.224 Sum_probs=142.4
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecCCcc--HHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLPGKE--RQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~~~~--~~~si~~~l~~~~~ 75 (210)
.||+|+|+.+||||.|.++++..++ +++|.|+++++....++++..+ +|+++.++.+.+. ..+++..|-+++.
T Consensus 21 ~~KqLlpV~~KPmi~y~l~~L~~aG-I~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~~p~GlA~Av~~a~~fv~- 98 (286)
T COG1209 21 VPKQLLPVYDKPMIYYPLETLMLAG-IRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAEDFVG- 98 (286)
T ss_pred CCcccceecCcchhHhHHHHHHHcC-CceEEEEecCCchhhhhhhhcCccccCcceEEEecCCCCcHHHHHHHHHhhcC-
Confidence 4899999999999999999999997 9999999999766677776643 5778888776443 3677777777775
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEeeecccc----eEEccCCCceeeec-----CccCeeeecCCcc
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKAT----IKEANSESFVVRTL-----DRKTLWEMQTPQV 144 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~--~~~~~~~~~~~~~----~~~~~~~g~v~~~~-----~r~~~~~~~~P~~ 144 (210)
.+-+++..||.=|-. .+.++++.+.+ .++.+...++.|| +...+++|++..++ ++|++... .=+.
T Consensus 99 -~~~f~l~LGDNi~~~--~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~~~v~~l~EKP~~P~SNlAvt-GlY~ 174 (286)
T COG1209 99 -DDDFVLYLGDNIFQD--GLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDEDGKVIGLEEKPKEPKSNLAVT-GLYF 174 (286)
T ss_pred -CCceEEEecCceecc--ChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCCCcEEEeEECCCCCCCceeEE-EEEE
Confidence 344566669988877 88888887765 5778888888887 33345566665543 34554321 1133
Q ss_pred cChHHHHHH--HHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320 145 IKPDLLKKG--FELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 145 f~~~~l~~~--~~~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
|+..-+..+ ++...+.++++||....+-..|.++..++...-++|+.|++||..|..++..
T Consensus 175 ~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 175 YDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred eChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 333222211 1112223478999888888889888877776678999999999999998764
No 38
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.66 E-value=2.4e-15 Score=110.95 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=82.5
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVC 81 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl 81 (210)
-|+|++++|||||.|+++++.+ .+++|+|++++.. ..+++.+...++++...+ |.+....+..+++.+. ..++
T Consensus 18 EKPlleV~GkpLI~~v~~al~~--~~d~i~v~isp~t-p~t~~~~~~~gv~vi~tp-G~GYv~Dl~~al~~l~---~P~l 90 (177)
T COG2266 18 EKPLLEVCGKPLIDRVLEALRK--IVDEIIVAISPHT-PKTKEYLESVGVKVIETP-GEGYVEDLRFALESLG---TPIL 90 (177)
T ss_pred cCcchhhCCccHHHHHHHHHHh--hcCcEEEEeCCCC-HhHHHHHHhcCceEEEcC-CCChHHHHHHHHHhcC---CceE
Confidence 4999999999999999999987 4899999999986 678888888776654444 4677889999999986 3789
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH
Q 028320 82 IHDSARPLVLSKDVQKVLMDAL 103 (210)
Q Consensus 82 ~~~~d~Pli~~~~i~~~i~~~~ 103 (210)
++.+|.||+++.+|+.+++.+.
T Consensus 91 vvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 91 VVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred EEecccccCCHHHHHHHHHHHh
Confidence 9999999999999999999886
No 39
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.65 E-value=9.1e-15 Score=123.06 Aligned_cols=170 Identities=16% Similarity=0.179 Sum_probs=107.7
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
.||+|++++|+|||+|+++++.. .+++|+|++..+. ..+...+.+.........++.+...|+..|++.++ .+.+
T Consensus 22 ~~K~ll~i~Gkpll~~~i~~l~~--~~~~iivvv~~~~-~~~~~~~~~~~~i~d~~~g~~G~~~si~~gl~~~~--~~~v 96 (366)
T PRK14489 22 RDKALILLGGKPLIERVVDRLRP--QFARIHLNINRDP-ARYQDLFPGLPVYPDILPGFQGPLSGILAGLEHAD--SEYL 96 (366)
T ss_pred CCCceeEECCeeHHHHHHHHHHh--hCCEEEEEcCCCH-HHHHhhccCCcEEecCCCCCCChHHHHHHHHHhcC--CCcE
Confidence 38999999999999999999974 3899998776554 22333221111111123343567899999999875 5789
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCc--ccChHHHHHHHHHHH
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFELVN 158 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~--~f~~~~l~~~~~~~~ 158 (210)
+++.||+||+++++++++++.+...++.+ ++|..+ ..| .|- +|++..+..+.. ..
T Consensus 97 lv~~~D~P~i~~~~i~~L~~~~~~~~~~~-v~~~~g------~~g---------------~Pl~aiy~~~~~~~l~~-~l 153 (366)
T PRK14489 97 FVVACDTPFLPENLVKRLSKALAIEGADI-AVPHDG------ERA---------------HPLFALYHRSCLPALRR-YL 153 (366)
T ss_pred EEeeCCcCCCCHHHHHHHHHHhhccCCeE-EEEecC------CCc---------------eeeEEEEcHHHHHHHHH-HH
Confidence 99999999999999999999876544432 223211 112 354 576665554433 33
Q ss_pred hcCCCCCcHHHHHHhC-CCCeEEEec--C-CCCccccChhhHHHHHHHh
Q 028320 159 REGLEVTDDVSIVEHL-KHPVYITEG--S-YTNIKVTTPDDLLIAERIL 203 (210)
Q Consensus 159 ~~~~~~~d~~~~~~~~-g~~v~~v~~--~-~~~~dIdt~~Dl~~a~~~~ 203 (210)
..|. ..+.... ...+..+.. . ...++||||+||+.++...
T Consensus 154 ~~G~-----~~l~~~l~~~~~~~v~~~~~~~~~~nINTpeDl~~l~~~~ 197 (366)
T PRK14489 154 AEGE-----RRLFDFFQRQRVRYVDLSTQKDAFFNVNTPEDLEQLRAIP 197 (366)
T ss_pred HhCC-----ccHHHHHHhCCcEEEeccCCccccccCCCHHHHHHHhhhh
Confidence 3331 2333221 122333332 2 3457999999999998874
No 40
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=3.1e-14 Score=108.55 Aligned_cols=177 Identities=18% Similarity=0.204 Sum_probs=116.3
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccH-HHHHHHHHHcccCCCCE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKER-QDSVYSGLQEVDFNSEL 79 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~-~~si~~~l~~~~~~~d~ 79 (210)
.|.|+|++|+|||.++++++++++.+++|||+|++.+. +.+++.|.++|.. +..|..+. ..-...++++.+ .+.
T Consensus 19 gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~G~~--vfrGs~~dVL~Rf~~a~~a~~--~~~ 94 (241)
T COG1861 19 GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSHGFY--VFRGSEEDVLQRFIIAIKAYS--ADV 94 (241)
T ss_pred cchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHcCee--EecCCHHHHHHHHHHHHHhcC--CCe
Confidence 49999999999999999999999999999999999865 5778888888843 46665433 444455666654 578
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 159 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~ 159 (210)
|+-+.||.||++++.++.+++.+-+.|+-.+..... + -|. .-+.+....|..+-+...
T Consensus 95 VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~s~~~~-p------~G~--------------~vEV~~a~~L~~a~k~~~- 152 (241)
T COG1861 95 VVRVTGDNPFLDPELVDAAVDRHLEKGADYVSNTGA-P------LGT--------------DVEVMKARALKKAAKEAL- 152 (241)
T ss_pred EEEeeCCCCCCCHHHHHHHHHHHHhcCCccccccCC-c------ccc--------------ceeeeehHHHHHhHhhcc-
Confidence 999999999999999999999987776533211000 1 110 124455444443222110
Q ss_pred cCCCCCcHHHH-HHhCC--CCeEEEecC------CCCccccChhhHHHHHHHhhc
Q 028320 160 EGLEVTDDVSI-VEHLK--HPVYITEGS------YTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 160 ~~~~~~d~~~~-~~~~g--~~v~~v~~~------~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
..|..+.... +.+.. .++.+++.+ ...+.|||++||++++++++.
T Consensus 153 -e~~~rEhvT~yi~n~P~~fk~~~l~~p~~~~~~~~RltvDt~eD~~~~~~vye~ 206 (241)
T COG1861 153 -EAYYREHVTPYIRNNPERFKVAYLEAPEAWKRPDYRLTVDTQEDFALAKAVYEY 206 (241)
T ss_pred -chhhhhccCHHHHhCCceEEEEeecChhhccCCceEEEeccHHHHHHHHHHHHH
Confidence 0111111222 22222 244455332 245889999999999998763
No 41
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.61 E-value=3.5e-14 Score=111.16 Aligned_cols=187 Identities=14% Similarity=0.168 Sum_probs=113.1
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~--~~~~~~si~~~l~~~~~ 75 (210)
+||+|++++|+|||.|+++.+.+++ +++|+|++++.. +.+.+.+.+ ++..+.+..+ ..+..+++..|++.+.
T Consensus 19 ~pK~ll~i~g~pli~~~l~~l~~~g-~~~v~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~- 95 (223)
T cd06915 19 LPKPLAPVAGRPFLEYLLEYLARQG-ISRIVLSVGYLA-EQIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLP- 95 (223)
T ss_pred CCccccEECCcchHHHHHHHHHHCC-CCEEEEEcccCH-HHHHHHHcCccccCceEEEEECCCCCcchHHHHHHHhhcC-
Confidence 4899999999999999999999886 899999998764 455555553 2334434332 2334678999998884
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc----eEEccCCCceeeecCc-----cCeeeecCCcc
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANSESFVVRTLDR-----KTLWEMQTPQV 144 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~----~~~~~~~g~v~~~~~r-----~~~~~~~~P~~ 144 (210)
.+.++++.||+|+ +..+.++++.+...++ ++.+.+..+. ....+++|.+..+.+. +... .-.-+.
T Consensus 96 -~~~~lv~~~D~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~-~~Giy~ 171 (223)
T cd06915 96 -EDQFLVLNGDTYF--DVDLLALLAALRASGADATMALRRVPDASRYGNVTVDGDGRVIAFVEKGPGAAPGLI-NGGVYL 171 (223)
T ss_pred -CCCEEEEECCccc--CCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEECCCCeEEEEEeCCCCCCCCcE-EEEEEE
Confidence 4668889999987 4568888887765443 4444444321 1223445565543321 1111 111244
Q ss_pred cChHHHHHHHHHHHhcCC-CCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHH
Q 028320 145 IKPDLLKKGFELVNREGL-EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA 199 (210)
Q Consensus 145 f~~~~l~~~~~~~~~~~~-~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a 199 (210)
|+...|... . ..+. ..++-...+...| ++.....+..++||||++||..|
T Consensus 172 ~~~~~l~~~-~---~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 172 LRKEILAEI-P---ADAFSLEADVLPALVKRG-RLYGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred ECHHHHhhC-C---ccCCChHHHHHHHHHhcC-cEEEEecCCeEEecCCHHHHHhh
Confidence 555443321 1 1111 1111111122344 77766555678999999999887
No 42
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.60 E-value=3.2e-14 Score=123.94 Aligned_cols=201 Identities=15% Similarity=0.166 Sum_probs=126.3
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d 78 (210)
+||+|+|++|+|||+|+++++.+++ +++|+|++++.. +.+.+.+++.+ +.++.+ ..+..++++.|++.+....+
T Consensus 25 ~pK~llpi~gkpli~~~l~~l~~~g-i~~ivvv~~~~~-~~i~~~~~~~~--i~~v~~~~~~Gt~~al~~~~~~l~~~~~ 100 (481)
T PRK14358 25 LPKVLHPVAGRPMVAWAVKAARDLG-ARKIVVVTGHGA-EQVEAALQGSG--VAFARQEQQLGTGDAFLSGASALTEGDA 100 (481)
T ss_pred CCceecEECCeeHHHHHHHHHHhCC-CCeEEEEeCCCH-HHHHHHhccCC--cEEecCCCcCCcHHHHHHHHHHhhCCCC
Confidence 4999999999999999999999885 899999999865 45666655444 344433 22347889999988853223
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeE--Eeeecccc----eEEccCCCceeeecCccC-------eeeecC-Ccc
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAV--LGVPAKAT----IKEANSESFVVRTLDRKT-------LWEMQT-PQV 144 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~--~~~~~~~~----~~~~~~~g~v~~~~~r~~-------~~~~~~-P~~ 144 (210)
.++++.||+||+++.+++++++.+...++.+ ...++.++ ....+++|.+.++.+... .....+ -+.
T Consensus 101 ~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~d~~g~v~~~~Ek~~~~~~~~~~~~~n~Giyi 180 (481)
T PRK14358 101 DILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRGADGAVERIVEQKDATDAEKAIGEFNSGVYV 180 (481)
T ss_pred cEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEECCCCCEEEEEECCCCChhHhhCCeEEEEEEE
Confidence 3778999999999999999999887766543 23333332 112344566665443110 001111 244
Q ss_pred cChHHHHHHHHHHH---h-cCCCCCcHHHHHHhCCCCeEEEec--CCCCccccChhhHHHHHHHhhcc
Q 028320 145 IKPDLLKKGFELVN---R-EGLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 145 f~~~~l~~~~~~~~---~-~~~~~~d~~~~~~~~g~~v~~v~~--~~~~~dIdt~~Dl~~a~~~~~~~ 206 (210)
|..+. ..++.... . .+++++|....+...|.++..... ....++++++.++..++.+++.+
T Consensus 181 ~~~~~-~~~~~~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~ 247 (481)
T PRK14358 181 FDARA-PELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRR 247 (481)
T ss_pred EchHH-HHHHHhcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHH
Confidence 55332 22232221 1 124566554455556666654333 35778899999888887666644
No 43
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.60 E-value=9.6e-14 Score=117.06 Aligned_cols=174 Identities=10% Similarity=0.041 Sum_probs=103.8
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-CCccHHHHHHHHHHcccCCCCEE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-~~~~~~~si~~~l~~~~~~~d~v 80 (210)
||+|++++|+|||+|+++++... +++|+|++.++... ....+++.+..-. .+.+...++..|++..+ .+.+
T Consensus 191 ~K~ll~~~Gk~ll~~~l~~l~~~--~~~vvV~~~~~~~~----~~~~~~v~~i~d~~~~~Gpl~gi~~al~~~~--~~~~ 262 (369)
T PRK14490 191 DKALLSYHESNQLVHTAALLRPH--CQEVFISCRAEQAE----QYRSFGIPLITDSYLDIGPLGGLLSAQRHHP--DAAW 262 (369)
T ss_pred CcEEEEECCccHHHHHHHHHHhh--CCEEEEEeCCchhh----HHhhcCCcEEeCCCCCCCcHHHHHHHHHhCC--CCcE
Confidence 79999999999999999999753 78999988766421 1223444332211 13445788888988764 4678
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE 160 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~ 160 (210)
+++.|||||+++++++.++........+.+.. ...+|...- ....|+...+..+..... .
T Consensus 263 lv~~~DmP~i~~~~i~~L~~~~~~~~~~~~~~--------~~~~g~p~p-----------l~~~y~~~~~~~l~~~~~-~ 322 (369)
T PRK14490 263 LVVACDLPFLDEATLQQLVEGRNPFRFATAFR--------HPDSGRPEP-----------LCAIYEPKSRLRLLLRHA-A 322 (369)
T ss_pred EEEeCCcCCCCHHHHHHHHHhccCCCceEEEE--------cCCCCceEe-----------EEEeecHHHHHHHHHHHH-h
Confidence 89999999999999999998643222222111 011231100 002233333333322111 1
Q ss_pred CCCCCcHHHHHHhCCCCeEEEec--CCCCccccChhhHHHHHHHhhccc
Q 028320 161 GLEVTDDVSIVEHLKHPVYITEG--SYTNIKVTTPDDLLIAERILNLSS 207 (210)
Q Consensus 161 ~~~~~d~~~~~~~~g~~v~~v~~--~~~~~dIdt~~Dl~~a~~~~~~~~ 207 (210)
| -.....+++..+ +..+.. ....+|||||+||+.++++++.-+
T Consensus 323 g--d~~~~~~l~~~~--~~~v~~~~~~~f~NINTpeDl~~~~~~~~~~~ 367 (369)
T PRK14490 323 G--NNSLRSFLATSR--IEELEPTDPEALQNINDPEEMDRAERALSTTK 367 (369)
T ss_pred C--CccHHHHHhhCC--eEEEcCCCchhcCCCCCHHHHHHHHHHHhhcC
Confidence 1 022344555433 333332 334579999999999998887543
No 44
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.59 E-value=1.3e-13 Score=115.70 Aligned_cols=201 Identities=13% Similarity=0.175 Sum_probs=128.4
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~--~~~~~~si~~~l~~~~~ 75 (210)
+||+|+|++|+|||.|+++.+.+++ +++|+|++++...+.+.+.+.+ ++..+.++.+ ..+..++++.+++.++.
T Consensus 20 ~pK~l~pv~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~al~~a~~~l~~ 98 (353)
T TIGR01208 20 RPKQLIPVANKPILQYAIEDLAEAG-ITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQGEPLGLAHAVYTARDFLGD 98 (353)
T ss_pred CCccccEECCEeHHHHHHHHHHHCC-CCEEEEEeCCCCHHHHHHHHhcccccCceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5999999999999999999999985 8999999998323556666643 3444555433 23357889999998852
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc----eEEccCCCceeeecCccC--e-eeec-CCccc
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANSESFVVRTLDRKT--L-WEMQ-TPQVI 145 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~----~~~~~~~g~v~~~~~r~~--~-~~~~-~P~~f 145 (210)
+-++++.||+|+ ...+..+++.+...++ .+.+.++.++ ....++++.+..+.++.. . .... .-+.|
T Consensus 99 --~~~li~~gD~~~--~~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~~~~~~~v~~~~ekp~~~~~~~~~~Giy~~ 174 (353)
T TIGR01208 99 --DDFVVYLGDNLI--QDGISRFVKSFEEKDYDALILLTKVRDPTAFGVAVLEDGKRILKLVEKPKEPPSNLAVVGLYMF 174 (353)
T ss_pred --CCEEEEECCeec--CccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEEEcCCCcEEEEEECCCCCCccceEEEEEEE
Confidence 335667899987 3678889988765543 4555555443 122233445655433210 0 0011 12455
Q ss_pred ChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhccc
Q 028320 146 KPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 207 (210)
Q Consensus 146 ~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~ 207 (210)
+. .+.+.+..... .++++++....+...|.++.....+..+.+|+||+||..++..+..+.
T Consensus 175 ~~-~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~ 238 (353)
T TIGR01208 175 RP-LIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEV 238 (353)
T ss_pred CH-HHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhc
Confidence 55 34444443221 123455544444456777877666667899999999999999887643
No 45
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.59 E-value=3.4e-14 Score=109.80 Aligned_cols=166 Identities=13% Similarity=0.137 Sum_probs=101.5
Q ss_pred CCccceecCC-eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE--ecCCccHHHHHHHHHHcccCCC
Q 028320 1 MPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF--SLPGKERQDSVYSGLQEVDFNS 77 (210)
Q Consensus 1 ~~K~l~~i~g-kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~--~~~~~~~~~si~~~l~~~~~~~ 77 (210)
.||++++++| +|||+|+++.+... +++|+|+++++. . .++..+.. ..+..+...++..++...+ .
T Consensus 24 ~~K~ll~~~g~~~ll~~~i~~l~~~--~~~vvvv~~~~~---~-----~~~~~~v~d~~~~~~gpl~gi~~~l~~~~--~ 91 (196)
T PRK00560 24 ENKALLPFGSYSSLLEYQYTRLLKL--FKKVYISTKDKK---F-----EFNAPFLLEKESDLFSPLFGIINAFLTLQ--T 91 (196)
T ss_pred CCceEEEeCCCCcHHHHHHHHHHHh--CCEEEEEECchh---c-----ccCCcEEecCCCCCCCcHHHHHHHHHhcC--C
Confidence 3799999999 99999999999854 799999998621 1 11211111 1112233445556665543 6
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCc--ccChHHHHHHHH
Q 028320 78 ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFE 155 (210)
Q Consensus 78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~--~f~~~~l~~~~~ 155 (210)
+.++++.||+||++++++++++. ..+..+ +++..+. .+ .|- +|+...+..+..
T Consensus 92 ~~vlv~~~D~P~i~~~~i~~l~~---~~~~~~-~~~~~~~------~~---------------~Pl~al~~~~~~~~l~~ 146 (196)
T PRK00560 92 PEIFFISVDTPFVSFESIKKLCG---KENFSV-TYAKSPT------KE---------------HYLISLWHQSLLNALIY 146 (196)
T ss_pred CeEEEEecCcCcCCHHHHHHHHh---cCCCCE-EEEccCC------ce---------------eeeEEEEcHHHHHHHHH
Confidence 89999999999999999999853 222222 1222110 11 354 777766665443
Q ss_pred HHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcc
Q 028320 156 LVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 156 ~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~ 206 (210)
...+.+ .....+++..+.....+..+...+|||||+||+.++..++.+
T Consensus 147 ~l~~~~---~~~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~~~~~~ 194 (196)
T PRK00560 147 ALKTQN---YRLSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQILKSR 194 (196)
T ss_pred HHHhCC---ccHHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHHHHHHh
Confidence 332221 123456665553222223334568999999999998877543
No 46
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.59 E-value=1.3e-13 Score=112.45 Aligned_cols=197 Identities=17% Similarity=0.200 Sum_probs=122.5
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~--~~~~~~si~~~l~~~~~ 75 (210)
+||+|+|++|||||.|+++.+..++ +++|+|++.+...+.+++.+.+ ++.++.++.+ ..+..+++..|.+.+..
T Consensus 20 ~pK~Llpv~gkPmI~~~L~~l~~aG-i~~I~iv~~~~~~~~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al~~a~~~l~~ 98 (286)
T TIGR01207 20 VSKQLLPIYDKPMIYYPLSTLMLAG-IRDILIISTPQDTPRFQQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGEDFIGG 98 (286)
T ss_pred CCceeeEECCEEhHHHHHHHHHHCC-CCEEEEEecCCcHHHHHHHhccccccCceEEEEEccCCCCHHHHHHHHHHHhCC
Confidence 5999999999999999999999886 8999988865543455665543 4555666544 22347889999988852
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc----eEEccCCCceeeecCc-----cCeeeecC-Cc
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT----IKEANSESFVVRTLDR-----KTLWEMQT-PQ 143 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~--~~~~~~~~~~~~----~~~~~~~g~v~~~~~r-----~~~~~~~~-P~ 143 (210)
+.++++.+|.+|.. ..+..+++..... ++.+.+.++.++ +...+++|.+..+.++ +.+ ..+ -+
T Consensus 99 --~~~~li~gD~i~~~-~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~g~V~~i~EKp~~~~s~~--~~~GiY 173 (286)
T TIGR01207 99 --DPSALVLGDNIFYG-HDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSNGRAISIEEKPAQPKSNY--AVTGLY 173 (286)
T ss_pred --CCEEEEECCEeccc-cCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEECCCCeEEEEEECCCCCCCCE--EEEEEE
Confidence 33455569999854 6788888876544 344555565544 2223445666554322 221 111 24
Q ss_pred ccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCC-CCccccChhhHHHHHHHhh
Q 028320 144 VIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAERILN 204 (210)
Q Consensus 144 ~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~v~~v~~~~-~~~dIdt~~Dl~~a~~~~~ 204 (210)
+|+... ...+.... +.+++++|....+...|.......... .++||.||+||..|..+++
T Consensus 174 i~~~~i-~~~l~~~~~~~~ge~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 174 FYDNRV-VEIARQLKPSARGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred EEchHH-HHHHhhcCCCCCCcEeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 455443 33333221 122456665554444553222222233 4899999999999998876
No 47
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.59 E-value=2.3e-13 Score=108.27 Aligned_cols=200 Identities=17% Similarity=0.232 Sum_probs=121.0
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~--~~~~~~si~~~l~~~~~ 75 (210)
+||+|+|++|+|||.|+++.+..++ +++|+|+++....+.+.+.+.. ++..+.+... ..+..+++..+...++
T Consensus 21 ~pK~llpv~~~pli~~~l~~l~~~g-i~~i~vv~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~- 98 (240)
T cd02538 21 VSKQLLPVYDKPMIYYPLSTLMLAG-IREILIISTPEDLPLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIG- 98 (240)
T ss_pred CCceeeEECCEEhHHHHHHHHHHCC-CCEEEEEeCcchHHHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHhcC-
Confidence 5999999999999999999999885 8999998876543445555532 3444544433 1234778888888885
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc----eEEccCCCceeeecCccC---eeeecC-Cccc
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANSESFVVRTLDRKT---LWEMQT-PQVI 145 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~~----~~~~~~~g~v~~~~~r~~---~~~~~~-P~~f 145 (210)
.+.++++.||+|+.+. ++.++++.+...+ +.+.+.++.++ ....+.+|.+..+.++.. .....+ -+.|
T Consensus 99 -~~~~lv~~gD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~~~~~~Giyi~ 176 (240)
T cd02538 99 -DDPVCLILGDNIFYGQ-GLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDENGRVLSIEEKPKKPKSNYAVTGLYFY 176 (240)
T ss_pred -CCCEEEEECCEEEccH-HHHHHHHHHHhcCCCcEEEEEECCchhcCceEEecCCCcEEEEEECCCCCCCCeEEEEEEEE
Confidence 3446777899998654 7888888775433 34445555443 122344566655433210 111111 2445
Q ss_pred ChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCC-CeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320 146 KPDLLKKGFELVNR---EGLEVTDDVSIVEHLKH-PVYITEGSYTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 146 ~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~-~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
+...| +.+..... ..+++++....+...|. .+........++||+||+||..++++++.
T Consensus 177 ~~~~l-~~l~~~~~~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~~~ 239 (240)
T cd02538 177 DNDVF-EIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFVQT 239 (240)
T ss_pred CHHHH-HHHHhcCCCCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHHhh
Confidence 55543 44432211 12344544444434443 22223323578999999999999998763
No 48
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.57 E-value=2.4e-13 Score=103.40 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=98.9
Q ss_pred CCccceecCC--eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec---CCccHHHHHHHHHHcc-c
Q 028320 1 MPKQYLPLLG--QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL---PGKERQDSVYSGLQEV-D 74 (210)
Q Consensus 1 ~~K~l~~i~g--kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~---~~~~~~~si~~~l~~~-~ 74 (210)
.+|.|++++| +|||+|+++++. + .+++|+|++++.. . . ...++. ++. .+.+...++..|+..+ .
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~-~-~~~~iivv~~~~~-~-~----~~~~~~--~i~d~~~g~gpl~~~~~gl~~~~~ 72 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVG-Q-RCAPVFVMAAPGQ-P-L----PELPAP--VLRDELRGLGPLPATGRGLRAAAE 72 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHh-h-cCCEEEEECCCCc-c-c----ccCCCC--EeccCCCCCCcHHHHHHHHHHHHh
Confidence 3799999999 999999999875 3 4799999998653 1 1 122322 222 1334466666677654 2
Q ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHH
Q 028320 75 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGF 154 (210)
Q Consensus 75 ~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~ 154 (210)
.+.++++++.||||+++++.++++++.+...+..+. .+. +. ..+. .+..|+...+..+.
T Consensus 73 ~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~~~~~-~~~-~g-----~~~p--------------l~~~~~~~l~~~l~ 131 (178)
T PRK00576 73 AGARLAFVCAVDMPYLTVELIDDLARPAAQTDAEVV-LPW-DG-----RDHY--------------LAAVYRTDLAERVD 131 (178)
T ss_pred cCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCCCcEE-Eec-CC-----CcCc--------------EEEEehHHHHHHHH
Confidence 246899999999999999999999987655443322 221 11 0110 12556655444332
Q ss_pred HHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHH
Q 028320 155 ELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA 199 (210)
Q Consensus 155 ~~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a 199 (210)
....++ -..-..+++..+.....+..+...+|||||+||+.+
T Consensus 132 -~~~~~g--~~~~~~~l~~~~~~~v~~~~~~~f~ninTped~~~~ 173 (178)
T PRK00576 132 -ALVGAG--ERSMRALVDASDAQRIVMPESRPLTNVNTAADLPAP 173 (178)
T ss_pred -HHHHcC--CccHHHHHHhCCceEecCCCCCccccCCCHHHHHHh
Confidence 221111 112344555444222223333456799999999765
No 49
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.56 E-value=1.7e-13 Score=118.46 Aligned_cols=192 Identities=18% Similarity=0.219 Sum_probs=122.7
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe-cC-CccHHHHHHHHHHcccCCCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-LP-GKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~-~~-~~~~~~si~~~l~~~~~~~d 78 (210)
+||+|+|++|||||+|+++++.+. +++|+|++++.. +.+.+...+ + +.++ .. ..+..++++.+++.++. .+
T Consensus 18 ~pK~l~~v~gkpli~~~l~~l~~~--~~~i~vv~~~~~-~~i~~~~~~-~--~~~~~~~~~~g~~~ai~~a~~~l~~-~~ 90 (448)
T PRK14357 18 IPKVLHKISGKPMINWVIDTAKKV--AQKVGVVLGHEA-ELVKKLLPE-W--VKIFLQEEQLGTAHAVMCARDFIEP-GD 90 (448)
T ss_pred CCceeeEECCeeHHHHHHHHHHhc--CCcEEEEeCCCH-HHHHHhccc-c--cEEEecCCCCChHHHHHHHHHhcCc-CC
Confidence 599999999999999999999875 489999998765 344443322 2 2233 22 22347889999998853 47
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccce----EEccCCCceeeecC---c----cCeeeecCC-cc
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATI----KEANSESFVVRTLD---R----KTLWEMQTP-QV 144 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~~----~~~~~~g~v~~~~~---r----~~~~~~~~P-~~ 144 (210)
.++++++|+||++..+++++++.+.+.++ .+.+.++.++. ...+ +|.+ +.++ + +..+..++. +.
T Consensus 91 ~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d-~g~v-~~~e~~~~~~~~~~~~~~~~GiYv 168 (448)
T PRK14357 91 DLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD-GGKY-RIVEDKDAPEEEKKIKEINTGIYV 168 (448)
T ss_pred eEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc-CCeE-EEEECCCCChHHhcCcEEEeEEEE
Confidence 89999999999999999999998866544 44455554331 1122 4555 2222 1 112334454 67
Q ss_pred cChHHHHHHHHHHHhc---C-CCCCcHHHHHHhCCCCeEEEe--cCCCCccccChhhHHHHHHHhhc
Q 028320 145 IKPDLLKKGFELVNRE---G-LEVTDDVSIVEHLKHPVYITE--GSYTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 145 f~~~~l~~~~~~~~~~---~-~~~~d~~~~~~~~g~~v~~v~--~~~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
|+.+.|.+++...... + ++++|....+ .++.... +....++++||+||+.++.+++.
T Consensus 169 ~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~----~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~ 231 (448)
T PRK14357 169 FSGDFLLEVLPKIKNENAKGEYYLTDAVNFA----EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRM 231 (448)
T ss_pred EEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh----hheeEEecCCHHHEEccCCHHHHHHHHHHHHH
Confidence 7777666655432211 1 3344433222 2344332 33457889999999999988753
No 50
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.56 E-value=4.7e-13 Score=109.32 Aligned_cols=198 Identities=15% Similarity=0.221 Sum_probs=124.4
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecCC--ccHHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLPG--KERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~~--~~~~~si~~~l~~~~~ 75 (210)
+||+|+|++|||||.|.++.+..++ +++|+|++.+...+.+.+.+.+ ++.++.++.+. .+..+++..|.+.+.
T Consensus 24 ~pK~Llpv~gkPmI~~~l~~l~~aG-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~~~Gta~Al~~a~~~i~- 101 (292)
T PRK15480 24 VSKQLLPIYDKPMIYYPLSTLMLAG-IRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIG- 101 (292)
T ss_pred CCceEeEECCEEHHHHHHHHHHHCC-CCEEEEEecCCchHHHHHHHcCccccCceeEEEECCCCCCHHHHHHHHHHHhC-
Confidence 5999999999999999999999986 8999987766543456666543 45556665442 234778888888885
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEeeecccc----eEEccCCCceeeecCc-----cCeeeecCCcc
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKAT----IKEANSESFVVRTLDR-----KTLWEMQTPQV 144 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~--~~~~~~~~~~~~----~~~~~~~g~v~~~~~r-----~~~~~~~~P~~ 144 (210)
+.++ +++.+|.+|.+ ..+..+++.+... ++.+.+.++.++ +...+++|.+..+.++ +... .-.=+.
T Consensus 102 ~~~~-~lv~gD~i~~~-~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~d~~g~v~~i~EKP~~p~s~~a-~~GiY~ 178 (292)
T PRK15480 102 GDDC-ALVLGDNIFYG-HDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQNGTAISLEEKPLQPKSNYA-VTGLYF 178 (292)
T ss_pred CCCE-EEEECCeeeec-cCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEECCCCcEEEEEECCCCCCCCEE-EEEEEE
Confidence 2354 55669998864 5688888877554 344445555554 2233545666544321 2211 111244
Q ss_pred cChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCC-CCccccChhhHHHHHHHhh
Q 028320 145 IKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAERILN 204 (210)
Q Consensus 145 f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~v~~v~~~~-~~~dIdt~~Dl~~a~~~~~ 204 (210)
|+... ....+... +.+++++|-...+...|.......... .++||.|++||..|+.+++
T Consensus 179 ~~~~v-~~~~~~~~~~~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 179 YDNDV-VEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred EChHH-HHHHhhcCCCCCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 55443 33333211 122567766555555664433334434 5899999999999999887
No 51
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.55 E-value=1.3e-13 Score=102.82 Aligned_cols=103 Identities=22% Similarity=0.340 Sum_probs=82.9
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-CCccHHHHHHHHHHcccCCCCEE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-~~~~~~~si~~~l~~~~~~~d~v 80 (210)
||+|++++|+|||+|+++++.+.+ +++|+|+++++ .+.+.+.+++..+.... .+.+...|+..|+..+. ..+.+
T Consensus 15 ~K~l~~i~g~~li~~~l~~l~~~~-~~~Ivvv~~~~---~~~~~~~~~~~~~v~~~~~~~G~~~sl~~a~~~~~-~~~~v 89 (160)
T PF12804_consen 15 PKALLPIGGKPLIERVLEALREAG-VDDIVVVTGEE---EIYEYLERYGIKVVVDPEPGQGPLASLLAALSQLP-SSEPV 89 (160)
T ss_dssp CGGGSEETTEEHHHHHHHHHHHHT-ESEEEEEESTH---HHHHHHTTTTSEEEE-STSSCSHHHHHHHHHHTST-TSSEE
T ss_pred CccceeECCccHHHHHHHHhhccC-CceEEEecChH---HHHHHHhccCceEEEeccccCChHHHHHHHHHhcc-cCCCc
Confidence 899999999999999999999986 89999999984 34555566665543332 14567999999999984 47899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAV 109 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~ 109 (210)
+++.||+||+++++++++++.+...++.+
T Consensus 90 lv~~~D~p~~~~~~l~~l~~~~~~~~~~i 118 (160)
T PF12804_consen 90 LVLPCDQPFLSPELLRRLLEALEKSPADI 118 (160)
T ss_dssp EEEETTETTS-HHHHHHHHHHHHHTTTSE
T ss_pred EEEeCCccccCHHHHHHHHHHHhccCCcE
Confidence 99999999999999999999998665533
No 52
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.55 E-value=5.4e-13 Score=105.68 Aligned_cols=195 Identities=19% Similarity=0.263 Sum_probs=121.7
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecCCc--cHHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLPGK--ERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~~~--~~~~si~~~l~~~~~ 75 (210)
.||+|++++|+|||+|+++.+..++ +++|+|+++... ..+.+.+++ ++..+.++.+.. +..+|+..|+..+.
T Consensus 21 ~pK~l~~i~g~~li~~~l~~l~~~~-~~~i~vv~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~sl~~a~~~i~- 97 (236)
T cd04189 21 RPKQLIPVAGKPIIQYAIEDLREAG-IEDIGIVVGPTG-EEIKEALGDGSRFGVRITYILQEEPLGLAHAVLAARDFLG- 97 (236)
T ss_pred CCceeeEECCcchHHHHHHHHHHCC-CCEEEEEcCCCH-HHHHHHhcchhhcCCeEEEEECCCCCChHHHHHHHHHhcC-
Confidence 4899999999999999999999885 899999999864 556666654 344555554422 34788999998875
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccce----EEccCCCceeeecCc-----cCeeeecCCcc
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATI----KEANSESFVVRTLDR-----KTLWEMQTPQV 144 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~~----~~~~~~g~v~~~~~r-----~~~~~~~~P~~ 144 (210)
+ +-++++.||+.+ + ..+..+++.+...++ ++.+.+..++. ...+ +|.+..+.++ +.... -.-+.
T Consensus 98 ~-~~~li~~~D~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d-~~~v~~~~ek~~~~~~~~~~-~Giy~ 172 (236)
T cd04189 98 D-EPFVVYLGDNLI-Q-EGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVD-DGRIVRLVEKPKEPPSNLAL-VGVYA 172 (236)
T ss_pred C-CCEEEEECCeec-C-cCHHHHHHHHHhcCCceEEEEEECCCcccceEEEEc-CCeEEEEEECCCCCCCCEEE-EEEEE
Confidence 2 345668899976 3 457778777655443 45555554331 1223 3455443321 11111 11133
Q ss_pred cChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhh
Q 028320 145 IKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 204 (210)
Q Consensus 145 f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~ 204 (210)
|..+.+. .+..... .++++++....+...|.++.....+..+.+|+||+||..++..+-
T Consensus 173 ~~~~~~~-~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l 234 (236)
T cd04189 173 FTPAIFD-AISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLL 234 (236)
T ss_pred eCHHHHH-HHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHH
Confidence 4433332 2322111 123455544444456777877666566899999999999998764
No 53
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=99.55 E-value=4.4e-14 Score=110.59 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=78.2
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccH-HHHHHHHHHcccC-CCCE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKER-QDSVYSGLQEVDF-NSEL 79 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~-~~si~~~l~~~~~-~~d~ 79 (210)
.|+|++++|||||.|+|+++++++.+++|+|+|+++. +.+.++++|+.+....+.... .+....++..... +.++
T Consensus 15 ~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~---i~~~~~~~g~~v~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 91 (217)
T PF02348_consen 15 GKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDEE---IDDIAEEYGAKVIFRRGSLADDTDRFIEAIKHFLADDEDI 91 (217)
T ss_dssp TGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSHH---HHHHHHHTTSEEEE--TTSSSHHHHHHHHHHHHTCSTTSE
T ss_pred cchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCHH---HHHHHHHcCCeeEEcChhhcCCcccHHHHHHHhhhhHHhh
Confidence 4999999999999999999999999999999999875 457788888777666553222 3333444444431 2459
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
++.++||.||++++.++++++.+.+.+.
T Consensus 92 vv~~~~d~Pll~~~~i~~~i~~~~~~~~ 119 (217)
T PF02348_consen 92 VVRLQGDSPLLDPTSIDRAIEDIREANE 119 (217)
T ss_dssp EEEESTTETT--HHHHHHHHHHHHHSTT
T ss_pred ccccCCeeeECCHHHHHHHHHHHhcCch
Confidence 9999999999999999999999987653
No 54
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.54 E-value=4e-13 Score=116.43 Aligned_cols=195 Identities=15% Similarity=0.177 Sum_probs=121.9
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d 78 (210)
+||+|+|++|+|||+|+++++..++ +++++|++++.. +.+++.+.+. .+.++.+ ..+..++++.++..++ +.+
T Consensus 23 ~pK~l~~i~gkpli~~~i~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~--~~~~i~~~~~~Gt~~al~~a~~~l~-~~~ 97 (456)
T PRK09451 23 LPKVLHTLAGKPMVQHVIDAANELG-AQHVHLVYGHGG-DLLKQTLADE--PLNWVLQAEQLGTGHAMQQAAPFFA-DDE 97 (456)
T ss_pred CChhcceeCChhHHHHHHHHHHhcC-CCcEEEEECCCH-HHHHHhhccC--CcEEEECCCCCCcHHHHHHHHHhhc-cCC
Confidence 4899999999999999999998875 899999998764 4455554432 3344432 2234788998988875 346
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceE---EccCCCceeeecCccC-------eeeecC-CcccCh
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK---EANSESFVVRTLDRKT-------LWEMQT-PQVIKP 147 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~g~v~~~~~r~~-------~~~~~~-P~~f~~ 147 (210)
.+++++||+||+++++++++++.....+.++...++.++.. ..+++|.+.++.++.. .....+ -+.|+.
T Consensus 98 ~vlV~~gD~P~i~~~~i~~l~~~~~~~~~~i~~~~~~~~~~yG~v~~~~g~V~~~~EKp~~~~~~~~~~~~~~GiYi~~~ 177 (456)
T PRK09451 98 DILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDNPTGYGRITRENGKVVGIVEQKDATDEQRQIQEINTGILVANG 177 (456)
T ss_pred cEEEEeCCcccCCHHHHHHHHHHhhcCCEEEEEEEcCCCCCceEEEecCCeEEEEEECCCCChHHhhccEEEEEEEEEEH
Confidence 78999999999999999999987655554555555544311 1233566665543211 011122 155666
Q ss_pred HHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEec--------CCCCccccChhhHHHHH
Q 028320 148 DLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEG--------SYTNIKVTTPDDLLIAE 200 (210)
Q Consensus 148 ~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~--------~~~~~dIdt~~Dl~~a~ 200 (210)
..|.+++..... .+++++|-...+...|.++..... ...+.++.+++++..+.
T Consensus 178 ~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~ 242 (456)
T PRK09451 178 ADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAE 242 (456)
T ss_pred HHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHH
Confidence 666665544221 224455444444456667765532 12235666676666543
No 55
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.51 E-value=2.8e-12 Score=98.39 Aligned_cols=170 Identities=18% Similarity=0.218 Sum_probs=103.9
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE-ecCCccHHHHHHHHHHcccCCCCE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-SLPGKERQDSVYSGLQEVDFNSEL 79 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~-~~~~~~~~~si~~~l~~~~~~~d~ 79 (210)
.+|.+.+++|+|||+|+++++... ++.++|+...+ ... ...++.++.. ..++.+...++.+||+... .+.
T Consensus 19 ~dK~l~~~~g~~lie~v~~~L~~~--~~~vvi~~~~~-~~~----~~~~g~~vv~D~~~~~GPL~Gi~~al~~~~--~~~ 89 (192)
T COG0746 19 RDKALLPLNGRPLIEHVIDRLRPQ--VDVVVISANRN-QGR----YAEFGLPVVPDELPGFGPLAGILAALRHFG--TEW 89 (192)
T ss_pred cccccceeCCeEHHHHHHHHhccc--CCEEEEeCCCc-hhh----hhccCCceeecCCCCCCCHHHHHHHHHhCC--CCe
Confidence 379999999999999999999865 45444444433 221 2234444322 1222356899999999986 789
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 159 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~ 159 (210)
++++.||+||++++.++.++......++++. .+. ++|.+.-. --.|+. .+...+.....
T Consensus 90 ~~v~~~D~P~i~~~lv~~l~~~~~~~~~~~~-~~~--------~~g~~~Pl-----------~aly~~-~l~~~l~~~l~ 148 (192)
T COG0746 90 VLVLPCDMPFIPPELVERLLSAFKQTGAAIV-PAH--------DDGRLEPL-----------FALYHR-ALLPALEEYLA 148 (192)
T ss_pred EEEEecCCCCCCHHHHHHHHHhhcccCCcEE-EeC--------CCCceeeE-----------EEEehH-HHHHHHHHHHH
Confidence 9999999999999999999998876653221 111 13322100 022322 22333332222
Q ss_pred cCCCCCcHHHHHHhCCCCeEEEecCC--CCccccChhhHHHHHHH
Q 028320 160 EGLEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDDLLIAERI 202 (210)
Q Consensus 160 ~~~~~~d~~~~~~~~g~~v~~v~~~~--~~~dIdt~~Dl~~a~~~ 202 (210)
++- .....+++..+.......... .-++||||+||+.+...
T Consensus 149 ~g~--~~~~~~l~~~~~~~v~~~~~~~~~F~NiNtpeDL~~~~~~ 191 (192)
T COG0746 149 KGE--RRLSALLERLGTEYVEFEDLEEDSFFNINTPEDLARAREK 191 (192)
T ss_pred hCC--ccHHHHHHHCCcEEEecCcCCcccccccCCHHHHHHHhcc
Confidence 221 122345555554443333333 56899999999988753
No 56
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.51 E-value=1e-12 Score=103.19 Aligned_cols=188 Identities=15% Similarity=0.071 Sum_probs=112.3
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh--cCCcEEEecCC---ccHHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK--INVDLKFSLPG---KERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~--~~~~v~~~~~~---~~~~~si~~~l~~~~~ 75 (210)
+||+++|++|+|||.|+++.+.+++ +++|+|++++.. +.+.+.+.+ ++..+.+..+. .+...++..++..+.
T Consensus 20 ~pK~llpi~g~~li~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~~- 96 (221)
T cd06422 20 RPKPLVPVAGKPLIDHALDRLAAAG-IRRIVVNTHHLA-DQIEAHLGDSRFGLRITISDEPDELLETGGGIKKALPLLG- 96 (221)
T ss_pred CCCceeeECCEEHHHHHHHHHHHCC-CCEEEEEccCCH-HHHHHHHhcccCCceEEEecCCCcccccHHHHHHHHHhcC-
Confidence 5899999999999999999999986 899999999875 455665554 45555444332 234778999999885
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHH--hcCCeEEee--ecccc----eEEccCCCceeeecCccCeeeecC-CcccC
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDAL--RVGAAVLGV--PAKAT----IKEANSESFVVRTLDRKTLWEMQT-PQVIK 146 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~--~~~~~~~~~--~~~~~----~~~~~~~g~v~~~~~r~~~~~~~~-P~~f~ 146 (210)
.+.++++.||+++- ..+.++++... ..++.+++. +..+. ....+++|.+....++.......+ -+.|.
T Consensus 97 -~~~~lv~~~D~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~v~~~~~~~~~~~~~~Giyi~~ 173 (221)
T cd06422 97 -DEPFLVVNGDILWD--GDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDADGRLRRGGGGAVAPFTFTGIQILS 173 (221)
T ss_pred -CCCEEEEeCCeeeC--CCHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEEECCCCcEeecccCCCCceEEEEEEEEc
Confidence 26788899999763 35777777765 344433322 32221 122344555554332211111111 23445
Q ss_pred hHHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHH
Q 028320 147 PDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA 199 (210)
Q Consensus 147 ~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a 199 (210)
...+.... ...+++++....+...+ ++........+.||+|++||..|
T Consensus 174 ~~~l~~l~----~~~~~~~d~~~~l~~~~-~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 174 PELFAGIP----PGKFSLNPLWDRAIAAG-RLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHhhCC----cCcccHHHHHHHHHHcC-CeEEEecCCEEEcCCCHHHHhhC
Confidence 44433221 11223343333333334 34434455679999999999764
No 57
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=99.50 E-value=1.8e-13 Score=105.53 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=68.5
Q ss_pred eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCC
Q 028320 11 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLV 90 (210)
Q Consensus 11 kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli 90 (210)
+|||+|+++++.++. +++++|+++++. +.+.+..+++.+. ...+.+..+++.+|++.+..+++.++++.||+||+
T Consensus 30 ~~ll~~~l~~l~~~~-~~~vvvv~~~~~---~~~~~~~~~v~~i-~~~~~G~~~si~~al~~~~~~~~~vlv~~~D~P~l 104 (195)
T TIGR03552 30 LAMLRDVITALRGAG-AGAVLVVSPDPA---LLEAARNLGAPVL-RDPGPGLNNALNAALAEAREPGGAVLILMADLPLL 104 (195)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEECCCHH---HHHHHHhcCCEEE-ecCCCCHHHHHHHHHHHhhccCCeEEEEeCCCCCC
Confidence 689999999999875 588999888643 3444555554432 22223568999999998754457899999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 028320 91 LSKDVQKVLMDALRVG 106 (210)
Q Consensus 91 ~~~~i~~~i~~~~~~~ 106 (210)
++++++++++.+...+
T Consensus 105 ~~~~i~~l~~~~~~~~ 120 (195)
T TIGR03552 105 TPRELKRLLAAATEGD 120 (195)
T ss_pred CHHHHHHHHHhcccCC
Confidence 9999999999775433
No 58
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.50 E-value=2.6e-12 Score=103.01 Aligned_cols=199 Identities=9% Similarity=0.019 Sum_probs=118.6
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhc---CCcEEE---------ec-----------
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI---NVDLKF---------SL----------- 57 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~---~~~v~~---------~~----------- 57 (210)
+||+|+|++|+|||+|+++.+.+++ +++|+|++++.. +.+.+...+. +..+.+ ..
T Consensus 19 ~pK~llpv~~~p~i~~~~~~~~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (253)
T cd02524 19 KPKPMVEIGGRPILWHIMKIYSHYG-HNDFILCLGYKG-HVIKEYFLNYFLHNSDVTIDLGTNRIELHNSDIEDWKVTLV 96 (253)
T ss_pred CCceEEEECCEEHHHHHHHHHHhCC-CceEEEECCCCH-HHHHHHHHhhhhhcCceeEeecccceeeecccccccceeec
Confidence 5999999999999999999999885 899999999876 4566666542 211111 11
Q ss_pred -C--CccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeeccc--c--eEEccCCCceeee
Q 028320 58 -P--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKA--T--IKEANSESFVVRT 130 (210)
Q Consensus 58 -~--~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~--~--~~~~~~~g~v~~~ 130 (210)
. .....+++..|++.+.. .+.++++.||.- . ...+..+++.....++.++.+.+.. . ....+++|.+..+
T Consensus 97 ~~~~~~~t~~al~~a~~~~~~-~~~~lv~~gD~i-~-~~dl~~ll~~h~~~~~~~tl~~~~~~~~~g~v~~d~~g~V~~~ 173 (253)
T cd02524 97 DTGLNTMTGGRLKRVRRYLGD-DETFMLTYGDGV-S-DVNINALIEFHRSHGKLATVTAVHPPGRFGELDLDDDGQVTSF 173 (253)
T ss_pred ccCcccccHHHHHHHHHhcCC-CCeEEEEcCCEE-E-CCCHHHHHHHHHHcCCCEEEEEecCCCcccEEEECCCCCEEEE
Confidence 0 12247788899988852 267888999963 3 4466888887766565333322211 1 1233445666544
Q ss_pred cCccCe--eeecC-CcccChHHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhccc
Q 028320 131 LDRKTL--WEMQT-PQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 207 (210)
Q Consensus 131 ~~r~~~--~~~~~-P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~ 207 (210)
.+.... ....+ -+.|....+ ..+... ...+.++....+...| ++........+.+|+|++||+.++.+++..+
T Consensus 174 ~ekp~~~~~~i~~Giyi~~~~l~-~~l~~~--~~~~~~d~l~~li~~~-~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~~ 249 (253)
T cd02524 174 TEKPQGDGGWINGGFFVLEPEVF-DYIDGD--DTVFEREPLERLAKDG-ELMAYKHTGFWQCMDTLRDKQTLEELWNSGK 249 (253)
T ss_pred EECCCCCCceEEEEEEEECHHHH-Hhhccc--cchhhHHHHHHHHhcC-CEEEEecCCEEEeCcCHHHHHHHHHHHHcCC
Confidence 322100 01111 133444433 222211 1122334333333444 5555554457999999999999999997655
Q ss_pred C
Q 028320 208 E 208 (210)
Q Consensus 208 ~ 208 (210)
+
T Consensus 250 ~ 250 (253)
T cd02524 250 A 250 (253)
T ss_pred C
Confidence 4
No 59
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.49 E-value=8.1e-13 Score=100.92 Aligned_cols=102 Identities=16% Similarity=0.107 Sum_probs=79.6
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
.||+|++++|+|||.|+++++.+++ +++|+|++++.. +.++..+++.+..+ ....+.+...++..|++.+. ..+.+
T Consensus 17 ~~K~Ll~i~GkplI~~vi~~l~~~~-i~~I~Vv~~~~~-~~~~~~l~~~~~~~-~~~~g~G~~~~l~~al~~~~-~~~~~ 92 (183)
T TIGR00454 17 VEKPLIEVCGRCLIDHVLSPLLKSK-VNNIIIATSPHT-PKTEEYINSAYKDY-KNASGKGYIEDLNECIGELY-FSEPF 92 (183)
T ss_pred CCceEeEECCEEHHHHHHHHHHhCC-CCEEEEEeCCCH-HHHHHHHhhcCcEE-EecCCCCHHHHHHHHhhccc-CCCCE
Confidence 3899999999999999999998886 899999998764 45566665433222 22345566788999998653 24678
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVG 106 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~ 106 (210)
+++.||+||+++++++.+++.+...+
T Consensus 93 lv~~~D~P~i~~~~i~~li~~~~~~~ 118 (183)
T TIGR00454 93 LVVSSDLINLRSKIIDSIVDYYYCIK 118 (183)
T ss_pred EEEeCCcCcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999886543
No 60
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.46 E-value=8.1e-12 Score=100.28 Aligned_cols=196 Identities=13% Similarity=0.117 Sum_probs=118.6
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhc-----CCcEE-------------------Ee
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-----NVDLK-------------------FS 56 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~-----~~~v~-------------------~~ 56 (210)
+||+|+|++|+|||.|+++.+..++ +++|+|++++.. +.+.+...++ +..+. +.
T Consensus 20 ~pK~llpv~g~pii~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (254)
T TIGR02623 20 RPKPMVEIGGKPILWHIMKIYSHHG-INDFIICCGYKG-YVIKEYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLV 97 (254)
T ss_pred CCcceeEECCEEHHHHHHHHHHHCC-CCEEEEEcCCCH-HHHHHHHHhhhhcccCeeEEecccccccccccCCccceeee
Confidence 5999999999999999999999885 999999999775 4555555432 11111 11
Q ss_pred cCC--ccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc----eEEccCCCceeee
Q 028320 57 LPG--KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT----IKEANSESFVVRT 130 (210)
Q Consensus 57 ~~~--~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~g~v~~~ 130 (210)
.++ .+..+++..+.+.+. .+.++++.||. +...++.++++.....++.++.+.+.++ ....+ +|.+..+
T Consensus 98 ~~~~~~gt~~al~~~~~~i~--~e~flv~~gD~--i~~~dl~~~~~~h~~~~~d~tl~~~~~~~~yG~v~~d-~~~V~~~ 172 (254)
T TIGR02623 98 DTGESTQTGGRLKRVREYLD--DEAFCFTYGDG--VADIDIKALIAFHRKHGKKATVTAVQPPGRFGALDLE-GEQVTSF 172 (254)
T ss_pred ecCCcCCcHHHHHHHHHhcC--CCeEEEEeCCe--EecCCHHHHHHHHHHcCCCEEEEEecCCCcccEEEEC-CCeEEEE
Confidence 111 123678888888885 35677899997 5577889999887766653333222222 11223 3555544
Q ss_pred cCccC--eeeecC-CcccChHHHHHHHHHHHhcCC-CCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcc
Q 028320 131 LDRKT--LWEMQT-PQVIKPDLLKKGFELVNREGL-EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 131 ~~r~~--~~~~~~-P~~f~~~~l~~~~~~~~~~~~-~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~ 206 (210)
.++.. -..+.+ -++|....| ..+.. ... ..+|....+...+ ++.....+..+.||+||+|++.++..++..
T Consensus 173 ~Ekp~~~~~~i~~Giyi~~~~il-~~l~~---~~~~~~~d~i~~l~~~~-~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 173 QEKPLGDGGWINGGFFVLNPSVL-DLIDG---DATVWEQEPLETLAQRG-ELSAYEHSGFWQPMDTLRDKNYLEELWESG 247 (254)
T ss_pred EeCCCCCCCeEEEEEEEEcHHHH-hhccc---cCchhhhhHHHHHHhCC-CEEEEeCCCEEecCCchHHHHHHHHHHHcC
Confidence 33210 011112 245555444 33322 111 2233333333344 465555556789999999999999998865
Q ss_pred cC
Q 028320 207 SE 208 (210)
Q Consensus 207 ~~ 208 (210)
-+
T Consensus 248 ~~ 249 (254)
T TIGR02623 248 RA 249 (254)
T ss_pred CC
Confidence 43
No 61
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.45 E-value=2.2e-12 Score=102.80 Aligned_cols=201 Identities=22% Similarity=0.260 Sum_probs=124.0
Q ss_pred CCccceecCCe-ehHHHHHHHHhcCCCCCeE-EEEeCCCChHHHHHHHhhc---CCcEEEec--CCccHHHHHHHHHHcc
Q 028320 1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEI-VVVCDPSYSDIFEETKEKI---NVDLKFSL--PGKERQDSVYSGLQEV 73 (210)
Q Consensus 1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~i-vVv~~~~~~~~i~~~~~~~---~~~v~~~~--~~~~~~~si~~~l~~~ 73 (210)
+||+|+|++|+ |||.|+++.+..++ ++++ +|++++.. +.+.+.+++. +.++.++. .+.+..+++..+...+
T Consensus 20 ~pK~ll~i~g~~pli~~~l~~l~~~g-~~~ii~V~~~~~~-~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a~~~i 97 (248)
T PF00483_consen 20 IPKPLLPIGGKYPLIDYVLENLANAG-IKEIIVVVNGYKE-EQIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQALDFI 97 (248)
T ss_dssp SSGGGSEETTEEEHHHHHHHHHHHTT-CSEEEEEEETTTH-HHHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHTHHHH
T ss_pred cccccceecCCCcchhhhhhhhcccC-CceEEEEEeeccc-ccccccccccccccccceeeecccccchhHHHHHHHHHh
Confidence 59999999999 99999999999975 8995 55444543 5677766653 23455543 2345688899999888
Q ss_pred cCC--CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--e--EEeeecccc----eEEccCCCceeeecCc-cC-e--eee
Q 028320 74 DFN--SELVCIHDSARPLVLSKDVQKVLMDALRVGA--A--VLGVPAKAT----IKEANSESFVVRTLDR-KT-L--WEM 139 (210)
Q Consensus 74 ~~~--~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~--~~~~~~~~~----~~~~~~~g~v~~~~~r-~~-~--~~~ 139 (210)
..+ .+.++++.||.-+-. .+..+++.+...++ . +...+..++ ....+++|.|.++.++ .. . ...
T Consensus 98 ~~~~~~~~~lv~~gD~i~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~V~~~~EKP~~~~~~~~~ 175 (248)
T PF00483_consen 98 EEEDDDEDFLVLNGDIIFDD--DLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDGRVIRIVEKPDNPNASNLI 175 (248)
T ss_dssp TTSEE-SEEEEETTEEEEST--THHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTSEEEEEEESCSSHSHSSEE
T ss_pred hhccccceEEEEeccccccc--hhhhHHHhhhccccccccccccccccccccceeeeeccceeEEEEeccCcccccceec
Confidence 642 246899999985554 88999988876554 2 223333322 2334555777766532 11 1 111
Q ss_pred cC-CcccChHHHHHHHHHHHh--cC-CCCCcHHHHHHhCCCCeEEEecCC--CCccccChhhHHHHHHHhhc
Q 028320 140 QT-PQVIKPDLLKKGFELVNR--EG-LEVTDDVSIVEHLKHPVYITEGSY--TNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 140 ~~-P~~f~~~~l~~~~~~~~~--~~-~~~~d~~~~~~~~g~~v~~v~~~~--~~~dIdt~~Dl~~a~~~~~~ 205 (210)
.+ -+.|....|....+.... .+ ..++|....+...|..+....... .++||+||+||..|+..+..
T Consensus 176 ~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 176 NTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp EEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred cCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 22 255666655554331111 11 123444344445666565444433 68999999999999987653
No 62
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.45 E-value=6.5e-12 Score=102.85 Aligned_cols=196 Identities=15% Similarity=0.165 Sum_probs=117.0
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-------------------------cCCcEEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-------------------------INVDLKF 55 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-------------------------~~~~v~~ 55 (210)
+||+|+|++|||||+|+++.+..++ +++|+|++++.. +.+.+...+ ++.++.+
T Consensus 24 ~PKpLvpV~gkPiI~~vl~~l~~~G-i~~ivivv~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (297)
T TIGR01105 24 IPKEMLPIVDKPMIQYIVDEIVAAG-IKEIVLVTHASK-NAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMN 101 (297)
T ss_pred CCceeeEECCEEHHHHHHHHHHHCC-CCEEEEEecCCh-HHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEEE
Confidence 5999999999999999999999886 899999999975 345554431 2334555
Q ss_pred ecCC--ccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCH-------HHHHHHHHHHHhcCC-eEEeeecc-cc----eEE
Q 028320 56 SLPG--KERQDSVYSGLQEVDFNSELVCIHDSARPLVLS-------KDVQKVLMDALRVGA-AVLGVPAK-AT----IKE 120 (210)
Q Consensus 56 ~~~~--~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~-------~~i~~~i~~~~~~~~-~~~~~~~~-~~----~~~ 120 (210)
+.+. .+..+++..|...+. +.++ +++.+|. +++. .++.++++.+...++ ++.+.++. ++ +..
T Consensus 102 ~~q~~~lGtg~Av~~a~~~l~-~~~f-lvv~gD~-l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~yGvv~ 178 (297)
T TIGR01105 102 VRQAQPLGLGHSILCARPVVG-DNPF-VVVLPDI-IIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQ 178 (297)
T ss_pred eeCCCcCchHHHHHHHHHHhC-CCCE-EEEECCe-eccccccccchhHHHHHHHHHHHhCCcEEEEEEcCCCCccceEEE
Confidence 5442 235888999999985 3344 5555885 4442 488899987765554 44444432 22 111
Q ss_pred c----cCCCce---eeecCc-cC-----eeeecC-CcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEec
Q 028320 121 A----NSESFV---VRTLDR-KT-----LWEMQT-PQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEG 183 (210)
Q Consensus 121 ~----~~~g~v---~~~~~r-~~-----~~~~~~-P~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~v~~v~~ 183 (210)
. +.+|.+ .+.+++ .. .....+ -++|+...|. .+..... ++++++|....+... .++.....
T Consensus 179 ~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~~-~~v~~~~~ 256 (297)
T TIGR01105 179 TKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAKK-QSVDAMLM 256 (297)
T ss_pred ecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHhc-CCEEEEEe
Confidence 2 223543 333221 00 011112 2455555433 3333211 124566655444443 35655444
Q ss_pred CCCCccccChhhHHHHHHHh
Q 028320 184 SYTNIKVTTPDDLLIAERIL 203 (210)
Q Consensus 184 ~~~~~dIdt~~Dl~~a~~~~ 203 (210)
...++||.||+||..+..-+
T Consensus 257 ~g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 257 TGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred ccEEECCCCHHHHHHHHHHH
Confidence 55789999999999995443
No 63
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.44 E-value=6e-12 Score=101.62 Aligned_cols=198 Identities=13% Similarity=0.143 Sum_probs=118.7
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh----------c--------------CCcEEEe
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----------I--------------NVDLKFS 56 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~----------~--------------~~~v~~~ 56 (210)
+||+++|++|+|||.|+++.+.+++ +++|+|++++.. ..+.+...+ . +..+.++
T Consensus 21 ~pK~llpv~gkpli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 98 (267)
T cd02541 21 IPKEMLPIVDKPVIQYIVEEAVAAG-IEDIIIVTGRGK-RAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYV 98 (267)
T ss_pred CCceeeEECCEEHHHHHHHHHHHCC-CCEEEEEeCCch-HHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEEE
Confidence 5999999999999999999999875 899999999875 334333321 1 2233344
Q ss_pred cCC--ccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHH-HHHHHHHHHHhcCCe-EEeeecc--cc----eEEccC---
Q 028320 57 LPG--KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSK-DVQKVLMDALRVGAA-VLGVPAK--AT----IKEANS--- 123 (210)
Q Consensus 57 ~~~--~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~-~i~~~i~~~~~~~~~-~~~~~~~--~~----~~~~~~--- 123 (210)
... .+..+++..++..++. +.++++.+|.++...+ +++++++.+...++. +.+.++. ++ ....+.
T Consensus 99 ~~~~~~Gt~~al~~~~~~i~~--~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~ 176 (267)
T cd02541 99 RQKEPLGLGHAVLCAKPFIGD--EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEEVPPEDVSKYGIVKGEKIDG 176 (267)
T ss_pred EcCCCCChHHHHHHHHHHhCC--CceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEEEEcChhcCccceEEEeecCCC
Confidence 321 2347889999988862 5578888999988765 899999887655543 3333332 11 112232
Q ss_pred -CCceeeecCcc----Ce-eeec-CCcccChHHHHHHHHHHHh--c-CCCCCcHHHHHHhCCCCeEEEecCCCCccccCh
Q 028320 124 -ESFVVRTLDRK----TL-WEMQ-TPQVIKPDLLKKGFELVNR--E-GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTP 193 (210)
Q Consensus 124 -~g~v~~~~~r~----~~-~~~~-~P~~f~~~~l~~~~~~~~~--~-~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~ 193 (210)
.+.+..+.++. .. .... .-++|....|.. +..... . .+++++....+...+ ++........+.||+||
T Consensus 177 ~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~-l~~~~~~~~~e~~~~d~i~~l~~~~-~v~~~~~~g~w~digt~ 254 (267)
T cd02541 177 DVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDI-LENTKPGKGGEIQLTDAIAKLLEEE-PVYAYVFEGKRYDCGNK 254 (267)
T ss_pred CceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHH-HHhCCCCCCCcEEHHHHHHHHHhcC-CEEEEEeeeEEEeCCCH
Confidence 12454433221 00 1111 124556554433 322111 1 133444333333444 67665555579999999
Q ss_pred hhHHHHHHHhh
Q 028320 194 DDLLIAERILN 204 (210)
Q Consensus 194 ~Dl~~a~~~~~ 204 (210)
+||..+..-+.
T Consensus 255 ~~y~~a~~~~~ 265 (267)
T cd02541 255 LGYLKATVEFA 265 (267)
T ss_pred HHHHHHHHHHh
Confidence 99999887553
No 64
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.44 E-value=4.8e-12 Score=105.35 Aligned_cols=94 Identities=17% Similarity=0.143 Sum_probs=68.1
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE-ecCCccHHHHHHHHHHcccCCCCEE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-SLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~-~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
||.|++++|+||++|+++.+... +++|+|+++++.. .. ....+..+.. ...+.+...|+..|++..+ .+.+
T Consensus 177 dKaLL~~~GkpLl~~~ie~l~~~--~~~ViVv~~~~~~---~~-~~~~~v~~I~D~~~~~GPlagI~aaL~~~~--~~~~ 248 (346)
T PRK14500 177 DKALLNYQGQPHAQYLYDLLAKY--CEQVFLSARPSQW---QG-TPLENLPTLPDRGESVGPISGILTALQSYP--GVNW 248 (346)
T ss_pred CcccceeCCccHHHHHHHHHHhh--CCEEEEEeCchHh---hh-ccccCCeEEeCCCCCCChHHHHHHHHHhCC--CCCE
Confidence 79999999999999999998753 7899998865421 11 0000111111 1113456899999999865 3456
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHH
Q 028320 81 CIHDSARPLVLSKDVQKVLMDAL 103 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~ 103 (210)
+++.||+||++++.++.+++.+.
T Consensus 249 lVl~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 249 LVVACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred EEEECCcCCCCHHHHHHHHHhhh
Confidence 88999999999999999998764
No 65
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.43 E-value=1.1e-11 Score=97.86 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=68.7
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhc-CCcEEEecC--CccHHHHHHHHHHcccCCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-NVDLKFSLP--GKERQDSVYSGLQEVDFNS 77 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~-~~~v~~~~~--~~~~~~si~~~l~~~~~~~ 77 (210)
+||+++|++|+|||+|+++.+.+++ +++|+|++++.. +.+.+.+.++ ++.+.+... ..+...|+..|+..+.
T Consensus 19 ~pK~l~~~~g~~li~~~l~~l~~~g-i~~i~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~--- 93 (229)
T cd02523 19 RPKCLLEINGKPLLERQIETLKEAG-IDDIVIVTGYKK-EQIEELLKKYPNIKFVYNPDYAETNNIYSLYLARDFLD--- 93 (229)
T ss_pred CCceeeeECCEEHHHHHHHHHHHCC-CceEEEEeccCH-HHHHHHHhccCCeEEEeCcchhhhCcHHHHHHHHHHcC---
Confidence 4899999999999999999999885 899999999865 4556655542 322222211 2334788999998872
Q ss_pred CEEEEEeCCCCCCCHHHHHHHH
Q 028320 78 ELVCIHDSARPLVLSKDVQKVL 99 (210)
Q Consensus 78 d~vl~~~~d~Pli~~~~i~~~i 99 (210)
+.++++.||.++ +++.++.++
T Consensus 94 ~~~lv~~~D~~~-~~~~~~~~~ 114 (229)
T cd02523 94 EDFLLLEGDVVF-DPSILERLL 114 (229)
T ss_pred CCEEEEeCCEec-CHHHHHHHH
Confidence 568889999986 676666655
No 66
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=3.2e-11 Score=101.29 Aligned_cols=197 Identities=18% Similarity=0.208 Sum_probs=122.6
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecCC--ccHHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLPG--KERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~~--~~~~~si~~~l~~~~~ 75 (210)
+||+|+|++|||||+|+++.+.+.+ +++++|++++.. +.+++.+.+ ++..+.++... .+...+++++.+.+..
T Consensus 22 ~PKPllpI~gkPii~~~l~~L~~~G-v~eivi~~~y~~-~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~~ 99 (358)
T COG1208 22 RPKPLLPIAGKPLIEYVLEALAAAG-VEEIVLVVGYLG-EQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLGG 99 (358)
T ss_pred CCcccceeCCccHHHHHHHHHHHCC-CcEEEEEeccch-HHHHHHHhcccccCCceEEEecCCcCccHHHHHHHHHhcCC
Confidence 5999999999999999999999875 999999999986 577777766 35667765432 2347889999999863
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc----eEEccCC-CceeeecCcc-------CeeeecC
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANSE-SFVVRTLDRK-------TLWEMQT 141 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~----~~~~~~~-g~v~~~~~r~-------~~~~~~~ 141 (210)
+.++++.||..+-.. ++.+++.++..++ .+....+.++ +...+.+ +.+....++. .+... .
T Consensus 100 --~~f~v~~GDv~~~~d--l~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f~ekp~~~~~~~~~in~-G 174 (358)
T COG1208 100 --DDFLVLNGDVLTDLD--LSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINA-G 174 (358)
T ss_pred --CcEEEEECCeeeccC--HHHHHHHHHhccCccEEEEEecCCCCcCceEEecCCCceEEEEEecCCCCCCCCceEEe-E
Confidence 667888899865544 9999988876643 3333344333 1112212 3454332221 11110 1
Q ss_pred CcccChHHHHHHHHHHHhcCCCCCc-HHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhccc
Q 028320 142 PQVIKPDLLKKGFELVNREGLEVTD-DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 207 (210)
Q Consensus 142 P~~f~~~~l~~~~~~~~~~~~~~~d-~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~ 207 (210)
-+.|+...|. .+... ....+.+ -...+.+.+..+.....+..++||+||+||..|++.+....
T Consensus 175 iyi~~~~v~~-~i~~~--~~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~ 238 (358)
T COG1208 175 IYIFDPEVFD-YIEKG--ERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGD 238 (358)
T ss_pred EEEECHHHhh-hcccC--CcccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhcc
Confidence 1333433332 11110 1112222 22233344544665555558999999999999999887543
No 67
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.39 E-value=2.2e-11 Score=97.95 Aligned_cols=193 Identities=13% Similarity=0.130 Sum_probs=114.2
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh----------------------c--CCcEEEe
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----------------------I--NVDLKFS 56 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~----------------------~--~~~v~~~ 56 (210)
+||+++|++|+|||+|+++.+..++ +++|+|++++.. ..+.+...+ + +..+.++
T Consensus 21 ~pK~llpi~g~pli~~~l~~l~~~g-i~~v~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 98 (260)
T TIGR01099 21 IPKEMLPIVDKPLIQYVVEEAVEAG-IEDILIVTGRGK-RAIEDHFDTSYELEHQLEKRGKEELLKEVRSISPLATIFYV 98 (260)
T ss_pred CCceeEEECCEEHHHHHHHHHHhCC-CCEEEEEeCCcH-HHHHHHhcccHHHHHHHHhhhhHHHHHHhhhccccceEEEE
Confidence 5899999999999999999999885 899999999875 334443321 0 1123333
Q ss_pred cC--CccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCH-HHHHHHHHHHHhcCCe-EEeeecc--cc----eEEcc---C
Q 028320 57 LP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLS-KDVQKVLMDALRVGAA-VLGVPAK--AT----IKEAN---S 123 (210)
Q Consensus 57 ~~--~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~-~~i~~~i~~~~~~~~~-~~~~~~~--~~----~~~~~---~ 123 (210)
.. ..+..+++..++..+. .+.++++.+|.|+... ++++.+++.+...++. +++.++. ++ +...+ +
T Consensus 99 ~~~~~~G~~~al~~~~~~~~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~g~v~~d~~~~ 176 (260)
T TIGR01099 99 RQKEQKGLGHAVLCAEPFVG--DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVEEVPKEEVSKYGVIDGEGVEE 176 (260)
T ss_pred ecCCCCCHHHHHHHHHHhhC--CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEEEECChhhcccCceEEeccccC
Confidence 22 2234788888988874 3557888999999877 5899999988766653 3333322 11 11222 1
Q ss_pred -CCceeeecCcc-----CeeeecC-CcccChHHHHHHHHHHHhc--CCCCCcHHHHHHhCCCCeEEEecCCCCccccChh
Q 028320 124 -ESFVVRTLDRK-----TLWEMQT-PQVIKPDLLKKGFELVNRE--GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPD 194 (210)
Q Consensus 124 -~g~v~~~~~r~-----~~~~~~~-P~~f~~~~l~~~~~~~~~~--~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~ 194 (210)
+|.|..+.++. .-....+ -++|....|..+....... .++++|....+... .++........+.||.|++
T Consensus 177 ~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~-~~v~~~~~~g~w~digs~~ 255 (260)
T TIGR01099 177 GLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEK-ETVYAYKFKGKRYDCGSKL 255 (260)
T ss_pred CceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhc-CCEEEEEcceEEEeCCCHH
Confidence 24565443211 0011111 2556655444332211111 13344433333333 3566555556799999999
Q ss_pred hHHH
Q 028320 195 DLLI 198 (210)
Q Consensus 195 Dl~~ 198 (210)
||..
T Consensus 256 ~y~~ 259 (260)
T TIGR01099 256 GYLK 259 (260)
T ss_pred HHhh
Confidence 9865
No 68
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.39 E-value=3e-11 Score=102.37 Aligned_cols=200 Identities=13% Similarity=0.072 Sum_probs=121.1
Q ss_pred CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCC-----cEE----EecC-----CccH
Q 028320 1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INV-----DLK----FSLP-----GKER 62 (210)
Q Consensus 1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~-----~v~----~~~~-----~~~~ 62 (210)
+||+|+|++|| |||+|+++.+.+++ +++|+|++++.. +.+.+..++ ++. .+. +... ..+.
T Consensus 24 ~PK~llpv~gk~pli~~~l~~l~~~G-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gt 101 (380)
T PRK05293 24 IAKPAVPFGGKYRIIDFTLSNCANSG-IDTVGVLTQYQP-LELNNHIGIGSPWDLDRINGGVTILPPYSESEGGKWYKGT 101 (380)
T ss_pred CccceeeeCCceeehhHHHHHHHhCC-CCEEEEEecCCH-HHHHHHHhCCCcccccCCCCCEEEeCCcccCCCCcccCCc
Confidence 59999999999 89999999999985 899999999976 456665532 221 112 2211 1234
Q ss_pred HHHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCe--EEeeec--ccc----eEEccCCCceeeecCc
Q 028320 63 QDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPA--KAT----IKEANSESFVVRTLDR 133 (210)
Q Consensus 63 ~~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~--~~~~~~--~~~----~~~~~~~g~v~~~~~r 133 (210)
.++++.|++.+.. +.+.++++.+|. +...++.++++.....++. +.+..+ .++ +...+++|.+..+.++
T Consensus 102 a~al~~a~~~l~~~~~~~~lV~~gD~--l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~V~~~~eK 179 (380)
T PRK05293 102 AHAIYQNIDYIDQYDPEYVLILSGDH--IYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRIVEFEEK 179 (380)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCE--EEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCcEEEEEeC
Confidence 7889999988853 236788999997 5566888888877665542 222222 122 1223445666543322
Q ss_pred cC---eeeecC-CcccChHHHHHHHHHHHhcC---C-CCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhh
Q 028320 134 KT---LWEMQT-PQVIKPDLLKKGFELVNREG---L-EVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 204 (210)
Q Consensus 134 ~~---~~~~~~-P~~f~~~~l~~~~~~~~~~~---~-~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~ 204 (210)
.. .....+ =+.|....|..++....... . +.+|....+...|.++.....+..+.+|+|++||..++..+-
T Consensus 180 p~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 258 (380)
T PRK05293 180 PKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELL 258 (380)
T ss_pred CCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHc
Confidence 10 111122 25566665655554322111 1 122333333345667776665567899999999999985443
No 69
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.38 E-value=1.9e-11 Score=95.71 Aligned_cols=188 Identities=12% Similarity=0.124 Sum_probs=109.7
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecCC--ccHHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLPG--KERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~~--~~~~~si~~~l~~~~~ 75 (210)
+||+|+|++|+|||+|+++.+.+++ +++|+|++++.. +.+.+.+.+ ++..+.++... .+..+++..+.+..
T Consensus 19 ~pK~ll~~~g~pli~~~l~~l~~~~-~~~iivv~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~~~~~-- 94 (220)
T cd06426 19 TPKPMLKVGGKPILETIIDRFIAQG-FRNFYISVNYLA-EMIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLPEKP-- 94 (220)
T ss_pred CCCccCeECCcchHHHHHHHHHHCC-CcEEEEECccCH-HHHHHHHCCccccCccEEEEECCCCCcchHHHHHHHhhC--
Confidence 5899999999999999999999885 899999998864 455555543 34444444321 22245554444332
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeeccc--c--eEEccCCCceeeecCccC-eeeecC-CcccCh
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKA--T--IKEANSESFVVRTLDRKT-LWEMQT-PQVIKP 147 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~--~--~~~~~~~g~v~~~~~r~~-~~~~~~-P~~f~~ 147 (210)
.+.++++.||. +....++.+++.+...++ ++.+.+... . +...+ +|.+..+.+... -....+ -+.|+.
T Consensus 95 -~~~~lv~~~D~--i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d-~~~v~~~~ek~~~~~~~~~Giy~~~~ 170 (220)
T cd06426 95 -TDPFLVMNGDI--LTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETE-GGRITSIEEKPTHSFLVNAGIYVLEP 170 (220)
T ss_pred -CCCEEEEcCCE--eeccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEC-CCEEEEEEECCCCCCeEEEEEEEEcH
Confidence 45678888994 666788999988776554 233333211 1 11223 355544332111 001111 134454
Q ss_pred HHHHHHHHHHHhcC-CCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHH
Q 028320 148 DLLKKGFELVNREG-LEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 200 (210)
Q Consensus 148 ~~l~~~~~~~~~~~-~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~ 200 (210)
..+.. +. ..+ +++++....+...|.++...+.+..+.+|+||+||..|+
T Consensus 171 ~~~~~-i~---~~~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 171 EVLDL-IP---KNEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHhh-cC---CCCCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 43322 11 112 234443333334566777766666799999999998763
No 70
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.37 E-value=6.9e-11 Score=97.13 Aligned_cols=197 Identities=15% Similarity=0.149 Sum_probs=117.1
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhc-------------------------CCcEEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-------------------------NVDLKF 55 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~-------------------------~~~v~~ 55 (210)
+||+++|++|+|||.|+++.+..++ +++|+|+++... +.+.+...+. +..+.+
T Consensus 29 ~pK~l~pv~g~pii~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~l~~~~~~~~~~e~~~i~~~~~~i~~ 106 (302)
T PRK13389 29 IPKEMLPLVDKPLIQYVVNECIAAG-ITEIVLVTHSSK-NSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQ 106 (302)
T ss_pred CCceeeEECCEEHHHHHHHHHHHCC-CCEEEEEeCCCH-HHHHHHHccchhhhhhhhhhhhhHHHHhhhhccccCceEEE
Confidence 5999999999999999999999985 999999999875 3444444320 112222
Q ss_pred ecCC--ccHHHHHHHHHHcccCCCCEEEEEeCCCCC------CCHHHHHHHHHHHHhcCC-eEEeeecccce--EEc--c
Q 028320 56 SLPG--KERQDSVYSGLQEVDFNSELVCIHDSARPL------VLSKDVQKVLMDALRVGA-AVLGVPAKATI--KEA--N 122 (210)
Q Consensus 56 ~~~~--~~~~~si~~~l~~~~~~~d~vl~~~~d~Pl------i~~~~i~~~i~~~~~~~~-~~~~~~~~~~~--~~~--~ 122 (210)
+.++ .+..+++..+...+. .+.++++.+|.++ ++..++.++++.+...++ ++.+.++.++. ..+ +
T Consensus 107 ~~q~~~~Gtg~Av~~a~~~~~--~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~tl~~~~~~~~~~yGvv~~~ 184 (302)
T PRK13389 107 VRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVDCK 184 (302)
T ss_pred eecCCCCChHHHHHHHHHHcC--CCCEEEEeCcceecccccccccccHHHHHHHHHhcCCCEEEEEEcccCCcceEEEec
Confidence 2221 234677888887764 2456778899987 466899999988766554 34444443321 111 1
Q ss_pred C-------CCceeeecCccC-----eeeecC-CcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCC
Q 028320 123 S-------ESFVVRTLDRKT-----LWEMQT-PQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYT 186 (210)
Q Consensus 123 ~-------~g~v~~~~~r~~-----~~~~~~-P~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~v~~v~~~~~ 186 (210)
. ++.+.++.+... -....+ -++|....| +.+..... ++++++|....+... .++.....+..
T Consensus 185 ~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il-~~l~~~~~~~~~e~~l~d~i~~l~~~-~~v~~~~~~G~ 262 (302)
T PRK13389 185 GVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEK-ETVEAYHMKGK 262 (302)
T ss_pred CcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHH-HHHHhCCCCCCCeeeHHHHHHHHHHc-CCEEEEEeeeE
Confidence 1 123443332110 011122 245555544 44443221 124455544444333 35655444557
Q ss_pred CccccChhhHHHHHHHh
Q 028320 187 NIKVTTPDDLLIAERIL 203 (210)
Q Consensus 187 ~~dIdt~~Dl~~a~~~~ 203 (210)
++||+||+||..+..-+
T Consensus 263 w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 263 SHDCGNKLGYMQAFVEY 279 (302)
T ss_pred EEeCCCHHHHHHHHHHH
Confidence 89999999999996654
No 71
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.37 E-value=5.7e-11 Score=94.04 Aligned_cols=194 Identities=12% Similarity=0.172 Sum_probs=115.4
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh----cCCcEEEecC--CccHHHHHHHHHHccc
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----INVDLKFSLP--GKERQDSVYSGLQEVD 74 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~----~~~~v~~~~~--~~~~~~si~~~l~~~~ 74 (210)
.||+|+|++|+|||.|+++.+..++ +++|+|++++.. +.+.+.+.+ ++..+.+... ..+..+++..|...+.
T Consensus 21 ~pK~llpv~g~pli~~~l~~l~~~g-~~~v~iv~~~~~-~~~~~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~ 98 (233)
T cd06425 21 VPKPLVEFCNKPMIEHQIEALAKAG-VKEIILAVNYRP-EDMVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLG 98 (233)
T ss_pred CCCccCeECCcchHHHHHHHHHHCC-CcEEEEEeeeCH-HHHHHHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHhc
Confidence 4899999999999999999999885 899999999875 345554443 3334433222 2334788999999886
Q ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc----eEEccC-CCceeeecCc--cCe-eeecC-Cc
Q 028320 75 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANS-ESFVVRTLDR--KTL-WEMQT-PQ 143 (210)
Q Consensus 75 ~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~----~~~~~~-~g~v~~~~~r--~~~-~~~~~-P~ 143 (210)
...+.++++.||..+ ...++++++.+.+.++ .+.+.+..++ +...++ +|.+....+. ... ....+ -+
T Consensus 99 ~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy 176 (233)
T cd06425 99 DDDEPFFVLNSDVIC--DFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIY 176 (233)
T ss_pred cCCCCEEEEeCCEee--CCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEcCCCCEEEEEEECCCCCCCCEEEEEEE
Confidence 422346777899753 2346888887766543 4445554332 223343 4566544322 111 11112 24
Q ss_pred ccChHHHHHHHHHHHhcCCCCC-cHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHh
Q 028320 144 VIKPDLLKKGFELVNREGLEVT-DDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERIL 203 (210)
Q Consensus 144 ~f~~~~l~~~~~~~~~~~~~~~-d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~ 203 (210)
.|+...|.. +.. ....+. +-...+... .++.....+..+.||+|++||..|...+
T Consensus 177 i~~~~~l~~-l~~---~~~~~~~~~~~~l~~~-~~v~~~~~~g~w~digt~~~~~~a~~~~ 232 (233)
T cd06425 177 ILNPSVLDR-IPL---RPTSIEKEIFPKMASE-GQLYAYELPGFWMDIGQPKDFLKGMSLY 232 (233)
T ss_pred EECHHHHHh-ccc---CcccchhhhHHHHHhc-CCEEEEeeCCEEEcCCCHHHHHHHHHHh
Confidence 566555432 221 111111 211122222 3676655556799999999999997754
No 72
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.37 E-value=7.5e-11 Score=94.77 Aligned_cols=198 Identities=14% Similarity=0.212 Sum_probs=117.2
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh----cCCcEEEecCC--ccHHHHHHHHHHccc
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK----INVDLKFSLPG--KERQDSVYSGLQEVD 74 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~----~~~~v~~~~~~--~~~~~si~~~l~~~~ 74 (210)
+||+|+|++|+|||+|+++.+.....+++|+|++++.. +.+.+.+.+ .+..+.++.+. .+..+++..+...+.
T Consensus 21 ~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~ 99 (257)
T cd06428 21 VPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPE-SVFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQIL 99 (257)
T ss_pred CCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCH-HHHHHHHHhcccccCceEEEecCCccCCcHHHHHHHHHHhh
Confidence 59999999999999999999998324899999998864 445555432 34445444331 223677888888774
Q ss_pred C-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecc--cc----eEEcc-CCCceeeecCccC---eeeecC
Q 028320 75 F-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAK--AT----IKEAN-SESFVVRTLDRKT---LWEMQT 141 (210)
Q Consensus 75 ~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~--~~----~~~~~-~~g~v~~~~~r~~---~~~~~~ 141 (210)
. +.+.++++.||.++ ..+++.+++.....++ .+.+.++. ++ +...+ ++|.|..+.++.. -..+.+
T Consensus 100 ~~~~~~~lv~~gD~~~--~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~~~~~~~ 177 (257)
T cd06428 100 AGNPSAFFVLNADVCC--DFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINC 177 (257)
T ss_pred ccCCCCEEEEcCCeec--CCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeEEEEEeCCCCcccceEEE
Confidence 2 24567889999984 3468899988876654 23333331 11 12224 3466655443211 011112
Q ss_pred -CcccChHHHHHHHHHHHh-----------------cC-CCC-CcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHH
Q 028320 142 -PQVIKPDLLKKGFELVNR-----------------EG-LEV-TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAER 201 (210)
Q Consensus 142 -P~~f~~~~l~~~~~~~~~-----------------~~-~~~-~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~ 201 (210)
-++|+...| ..+..... ++ +.+ +|....+... .++........+.||.|+++|..+.+
T Consensus 178 Giyi~~~~~~-~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~-~~v~~~~~~g~w~dig~~~~~~~a~~ 255 (257)
T cd06428 178 GVYLFSPEIF-DTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGS-GKLYVYKTDDFWSQIKTAGSAIYANR 255 (257)
T ss_pred EEEEECHHHH-HHHhhhccccccccccccccccccccceeeehhhhhhHHhcc-CCEEEecCCCeeecCCCHHHHHhHhh
Confidence 245665554 33332211 11 112 2322222222 35665555668999999999999987
Q ss_pred Hh
Q 028320 202 IL 203 (210)
Q Consensus 202 ~~ 203 (210)
++
T Consensus 256 ~~ 257 (257)
T cd06428 256 LY 257 (257)
T ss_pred cC
Confidence 53
No 73
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.36 E-value=3.3e-11 Score=101.72 Aligned_cols=200 Identities=13% Similarity=0.108 Sum_probs=117.4
Q ss_pred CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcE------EEecC-----CccHHHH
Q 028320 1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDL------KFSLP-----GKERQDS 65 (210)
Q Consensus 1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v------~~~~~-----~~~~~~s 65 (210)
+||+|+|++|| |||+|+++.+.+++ +++|+|++++...+.+.+...+ ++... .+..+ ++....+
T Consensus 23 ~PKpLlpV~gk~PlIe~~l~~L~~~G-i~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~~~~~~~~~e~~~l~tg~~~a 101 (369)
T TIGR02092 23 RPLASLPFGGRYRLIDFPLSNMVNAG-IRNVFIFFKNKERQSLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSEGGKRY 101 (369)
T ss_pred CcccccccCCeeeEEEEEhhhhhccC-CCEEEEEeCCCcHHHHHHHHhCCCCCCcccccCcEEEEeccCCCCcccChHHH
Confidence 59999999999 99999999999986 8999999999752256666642 23221 11111 1123456
Q ss_pred HHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCe--EEeeecc--cc-----eEEccCCCceeeecC---
Q 028320 66 VYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPAK--AT-----IKEANSESFVVRTLD--- 132 (210)
Q Consensus 66 i~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~--~~~~~~~--~~-----~~~~~~~g~v~~~~~--- 132 (210)
+..+++.+.. ..+.++++.||. +...++.++++.....++. +...++. ++ +...+++|.+..+..
T Consensus 102 ~~~a~~~l~~~~~~~~lvlnGD~--l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g~v~~~~~~~~ 179 (369)
T TIGR02092 102 FSQNLEFLKRSTSEYTVVLNSHM--VCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGKVKSIGQNLN 179 (369)
T ss_pred HHHHHHHHHhCCCCEEEEECCCE--EEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCCCEEeccccCC
Confidence 7777777742 246789999997 6668888999877666553 3333432 11 122233455543211
Q ss_pred ccCeeeecC-CcccChHHHHHHHHHHHhcCCCCCcHHHHHHh--CCCCeEEEecCCCCccccChhhHHHHHH-Hhh
Q 028320 133 RKTLWEMQT-PQVIKPDLLKKGFELVNREGLEVTDDVSIVEH--LKHPVYITEGSYTNIKVTTPDDLLIAER-ILN 204 (210)
Q Consensus 133 r~~~~~~~~-P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~--~g~~v~~v~~~~~~~dIdt~~Dl~~a~~-~~~ 204 (210)
...-....+ -+.|+...|..++......+. ...-..++.. .+.++.....+..++||+|++||..|+. +++
T Consensus 180 ~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~-~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~ 254 (369)
T TIGR02092 180 PEEEENISLDIYIVSTDLLIELLYECIQRGK-LTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLD 254 (369)
T ss_pred CCCcceeeeeEEEEEHHHHHHHHHHHhhcCc-cccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhC
Confidence 100011112 245555555554443322221 1111223322 2456655555567899999999999994 443
No 74
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.36 E-value=1.8e-11 Score=94.81 Aligned_cols=194 Identities=17% Similarity=0.148 Sum_probs=115.4
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEe-CCCChHHHHHHHhhcCCcEEEecC---C-ccHHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC-DPSYSDIFEETKEKINVDLKFSLP---G-KERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~-~~~~~~~i~~~~~~~~~~v~~~~~---~-~~~~~si~~~l~~~~~ 75 (210)
+||+|..++|+|+|.|+++++.+.+ +++++||| +... +.+++.+++++....++.+ . +....|+..|.+.+.
T Consensus 21 ~PK~Lvev~gr~ii~~~i~~L~~~g-i~e~vvV~~g~~~-~lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~- 97 (239)
T COG1213 21 IPKALVEVGGREIIYRTIENLAKAG-ITEFVVVTNGYRA-DLVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYMD- 97 (239)
T ss_pred CCchhhhcCCeEeHHHHHHHHHHcC-CceEEEEeccchH-HHHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhhc-
Confidence 5999999999999999999999986 89999999 6665 6778888888766555433 1 122677888888876
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc----eEEccCCCceeeecC----ccCeeeecCCcccCh
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT----IKEANSESFVVRTLD----RKTLWEMQTPQVIKP 147 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~g~v~~~~~----r~~~~~~~~P~~f~~ 147 (210)
.+ ++++.+|. +..+..+++++++- ..+.++...|.... .+-..++|.+.++-. .+..+.. -..+..
T Consensus 98 -~~-fii~~sD~-vye~~~~e~l~~a~-~~~li~d~~~~~~~~~ea~kv~~e~G~i~~igK~l~e~~~e~iG--i~~l~~ 171 (239)
T COG1213 98 -GR-FILVMSDH-VYEPSILERLLEAP-GEGLIVDRRPRYVGVEEATKVKDEGGRIVEIGKDLTEYDGEDIG--IFILSD 171 (239)
T ss_pred -Cc-EEEEeCCE-eecHHHHHHHHhCc-CCcEEEeccccccccCceeEEEecCCEEehhcCCcccccceeee--eEEech
Confidence 23 56677886 67899999998864 22233333332211 111234566543321 1111100 011222
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEec---CCCCccccChhhHHHHHHHhhc
Q 028320 148 DLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEG---SYTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 148 ~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~v~~---~~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
+.+...+....... ..+-..+....+.+...+.. ..-+++||||+|++.|++.+-.
T Consensus 172 ~i~~~~~~~~~e~~--~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 172 SIFEDTYELLVERS--EYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred HHHHHHHHHHhhhh--hHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 22222222211110 11123334445555444331 2467899999999999998754
No 75
>PRK10122 GalU regulator GalF; Provisional
Probab=99.33 E-value=1.4e-10 Score=95.10 Aligned_cols=195 Identities=15% Similarity=0.189 Sum_probs=115.7
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-------------------------cCCcEEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-------------------------INVDLKF 55 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-------------------------~~~~v~~ 55 (210)
+||+|+|++|||||+|+++.+..++ +++|+|++++.. +.+.+.... ++..+.+
T Consensus 24 ~PK~llpi~gkpiI~~~l~~l~~~G-i~~i~iv~~~~~-~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~ 101 (297)
T PRK10122 24 IPKEMLPIVDKPMIQYIVDEIVAAG-IKEIVLVTHASK-NAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMN 101 (297)
T ss_pred CCceeeEECCEEHHHHHHHHHHHCC-CCEEEEEcCCCh-HHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCCceEEE
Confidence 5999999999999999999999986 899999999865 344443321 2334455
Q ss_pred ecC--CccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCH-------HHHHHHHHHHHhcCC-eEEeeecc-cc----eEE
Q 028320 56 SLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLS-------KDVQKVLMDALRVGA-AVLGVPAK-AT----IKE 120 (210)
Q Consensus 56 ~~~--~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~-------~~i~~~i~~~~~~~~-~~~~~~~~-~~----~~~ 120 (210)
+.+ ..+..+++..+...+. +.++++ +.+|. ++++ -++.++++.+...++ ++.+.... ++ +..
T Consensus 102 ~~q~~~lGtg~al~~a~~~l~-~~~fvv-i~gD~-l~~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~~~~~yGvv~ 178 (297)
T PRK10122 102 VRQGQPLGLGHSILCARPAIG-DNPFVV-VLPDV-VIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQ 178 (297)
T ss_pred eecCCcCchHHHHHHHHHHcC-CCCEEE-EECCe-eccCccccccchhHHHHHHHHHHhCCcEEEEEECCCCCCCceEEE
Confidence 433 1234788999999984 335554 45887 6654 368999988876654 33333321 11 112
Q ss_pred cc----CCCc---eeeecCc--------cCeeeecC-CcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEE
Q 028320 121 AN----SESF---VVRTLDR--------KTLWEMQT-PQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYIT 181 (210)
Q Consensus 121 ~~----~~g~---v~~~~~r--------~~~~~~~~-P~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~v~~v 181 (210)
.+ .+|. |.++.+. +.. ..+ -++|....|.. +..... ..++++|....+... .++...
T Consensus 179 ~d~~~~~~g~v~~I~~~~EKp~~~~~~~s~~--~~~GiYi~~~~i~~~-l~~~~~~~~~e~~ltd~i~~l~~~-~~v~~~ 254 (297)
T PRK10122 179 TKEPLDREGKVSRIVEFIEKPDQPQTLDSDL--MAVGRYVLSADIWPE-LERTEPGAWGRIQLTDAIAELAKK-QSVDAM 254 (297)
T ss_pred ecCcccCCCCeeeEEEEEECCCCcccCCccE--EEEEEEEECHHHHHH-HHhCCCCCCCeeeHHHHHHHHHhC-CCEEEE
Confidence 22 2342 3332221 111 112 24555554333 332111 123456544444333 356555
Q ss_pred ecCCCCccccChhhHHHHHHHhh
Q 028320 182 EGSYTNIKVTTPDDLLIAERILN 204 (210)
Q Consensus 182 ~~~~~~~dIdt~~Dl~~a~~~~~ 204 (210)
.....++||.||+|+..+..-+.
T Consensus 255 ~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 255 LMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred EeCCEEEcCCCHHHHHHHHHHHH
Confidence 44557899999999999887653
No 76
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.33 E-value=8.5e-11 Score=92.82 Aligned_cols=193 Identities=13% Similarity=0.121 Sum_probs=109.2
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCCh--HHHHHHHhhc--CCcEEEec-CCccHHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKI--NVDLKFSL-PGKERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~--~~i~~~~~~~--~~~v~~~~-~~~~~~~si~~~l~~~~~ 75 (210)
+||+|+|++|+|||+|+++.+.+++ +++++|+++.+.. ..+.+..... +..+.+.. ...+..+++..|+..+..
T Consensus 19 ~pK~ll~i~g~pli~~~l~~l~~~g-~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~l~~a~~~l~~ 97 (231)
T cd04183 19 YPKPLIEVDGKPMIEWVIESLAKIF-DSRFIFICRDEHNTKFHLDESLKLLAPNATVVELDGETLGAACTVLLAADLIDN 97 (231)
T ss_pred CCceeeEECCEEHHHHHHHhhhccC-CceEEEEEChHHhhhhhHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHHHhhcCC
Confidence 4999999999999999999999886 8999999975432 1222222222 23333322 233458889999888742
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc---eEEccCCCceeeecCccCe--eeecCCcccChH
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT---IKEANSESFVVRTLDRKTL--WEMQTPQVIKPD 148 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~~---~~~~~~~g~v~~~~~r~~~--~~~~~P~~f~~~ 148 (210)
.+.++++.||. +.+. .+..++..+...+ +.+.+.+...+ ....+++|.+..+.+.... +..-.-+.|...
T Consensus 98 -~~~~lv~~~D~-i~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~Giy~~~~~ 174 (231)
T cd04183 98 -DDPLLIFNCDQ-IVES-DLLAFLAAFRERDLDGGVLTFFSSHPRWSYVKLDENGRVIETAEKEPISDLATAGLYYFKSG 174 (231)
T ss_pred -CCCEEEEecce-eecc-CHHHHHHHhhccCCceEEEEEeCCCCCeEEEEECCCCCEEEeEEcCCCCCccEeEEEEECcH
Confidence 35678899998 4444 4656666554433 23333332211 1223445666544322110 000112344443
Q ss_pred -HHHHHHHHHH-----h-cCCCCCcHHHHHHhCCCCeEEEec-CCCCccccChhhHH
Q 028320 149 -LLKKGFELVN-----R-EGLEVTDDVSIVEHLKHPVYITEG-SYTNIKVTTPDDLL 197 (210)
Q Consensus 149 -~l~~~~~~~~-----~-~~~~~~d~~~~~~~~g~~v~~v~~-~~~~~dIdt~~Dl~ 197 (210)
.+.+.+.... . ..+++++....+...|.++..... ...+.+|+||+||+
T Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl~ 231 (231)
T cd04183 175 SLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDLE 231 (231)
T ss_pred HHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhcC
Confidence 3333333211 1 113445544444456667776655 46789999999984
No 77
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.32 E-value=9.7e-11 Score=100.17 Aligned_cols=199 Identities=13% Similarity=0.109 Sum_probs=120.3
Q ss_pred CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cC---CcEEEe---cC--------CccHHH
Q 028320 1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-IN---VDLKFS---LP--------GKERQD 64 (210)
Q Consensus 1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~---~~v~~~---~~--------~~~~~~ 64 (210)
+||+|+|++|| |||+|+++.+.+++ +++|+|++++.. +.+.+.+.+ ++ ....++ .. ..+..+
T Consensus 26 ~PK~llPv~gk~plI~~~L~~l~~~G-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGta~ 103 (407)
T PRK00844 26 RAKPAVPFGGSYRLIDFVLSNLVNSG-YLRIYVLTQYKS-HSLDRHISQTWRLSGLLGNYITPVPAQQRLGKRWYLGSAD 103 (407)
T ss_pred CcccceeeCCcceEhHHHHHHHHHCC-CCEEEEEeccCH-HHHHHHHHhCcCccccCCCeEEECCcccCCCCCcccCCHH
Confidence 59999999999 99999999999986 999999999876 455655532 21 111111 11 123478
Q ss_pred HHHHHHHcccCC-CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCe--EEeeec--ccc----eEEccCCCceeeecCccC
Q 028320 65 SVYSGLQEVDFN-SELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPA--KAT----IKEANSESFVVRTLDRKT 135 (210)
Q Consensus 65 si~~~l~~~~~~-~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~--~~~~~~--~~~----~~~~~~~g~v~~~~~r~~ 135 (210)
+++.++..+..+ .++++++.||. +...++.++++.....++. +.+..+ .++ +...+++|.+..+.++..
T Consensus 104 al~~a~~~i~~~~~~~~lv~~gD~--v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~g~v~~~~eKp~ 181 (407)
T PRK00844 104 AIYQSLNLIEDEDPDYVVVFGADH--VYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGFLEKPA 181 (407)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCE--EEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCCCCEEEEEECCC
Confidence 899898888532 36788999997 5567889999887766542 222222 121 222344566654432210
Q ss_pred ----------eeeecC-CcccChHHHHHHHHHHHhc--C-CCC-CcHHHHHHhCCCCeEEEec------------CCCCc
Q 028320 136 ----------LWEMQT-PQVIKPDLLKKGFELVNRE--G-LEV-TDDVSIVEHLKHPVYITEG------------SYTNI 188 (210)
Q Consensus 136 ----------~~~~~~-P~~f~~~~l~~~~~~~~~~--~-~~~-~d~~~~~~~~g~~v~~v~~------------~~~~~ 188 (210)
.....+ -++|+...|...+...... + .++ +|-...+...+ ++..... ...+.
T Consensus 182 ~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~-~v~~~~~~~~~~~g~n~~~~g~w~ 260 (407)
T PRK00844 182 DPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERG-RAYVYDFSTNEVPGATERDRGYWR 260 (407)
T ss_pred CcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccC-eEEEEEcccccccccccCCCCEEE
Confidence 112222 2566766665555432211 1 223 34333333334 4443322 24589
Q ss_pred cccChhhHHHHHHHhh
Q 028320 189 KVTTPDDLLIAERILN 204 (210)
Q Consensus 189 dIdt~~Dl~~a~~~~~ 204 (210)
||.|++||..+...+-
T Consensus 261 Digt~~~y~~a~~~lL 276 (407)
T PRK00844 261 DVGTIDAYYDAHMDLL 276 (407)
T ss_pred ECCCHHHHHHHHHHHh
Confidence 9999999999987654
No 78
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.26 E-value=1.8e-10 Score=89.20 Aligned_cols=105 Identities=15% Similarity=0.230 Sum_probs=77.5
Q ss_pred CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCc-----EEEec--------CCccHH
Q 028320 1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVD-----LKFSL--------PGKERQ 63 (210)
Q Consensus 1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~-----v~~~~--------~~~~~~ 63 (210)
.||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+...+ ++.. +.++. ...+..
T Consensus 19 ~pK~llpv~g~~pli~~~l~~l~~~g-i~~iivv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gta 96 (200)
T cd02508 19 RAKPAVPFGGRYRLIDFPLSNMVNSG-IRNVGVLTQYKS-RSLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTA 96 (200)
T ss_pred CcceeeEECCeeeeHHHHHHHHHHCC-CCEEEEEeCCCh-HHHHHHHhCCCcccCCCCCCCEEEeCcccCCCCCcccCcH
Confidence 59999999999 99999999999985 899999999986 455555543 1111 22222 112347
Q ss_pred HHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028320 64 DSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV 109 (210)
Q Consensus 64 ~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~ 109 (210)
++++.|...+.. +.+.++++.||+ +....+.++++.+...++.+
T Consensus 97 ~al~~a~~~i~~~~~~~~lv~~gD~--v~~~~~~~~l~~~~~~~~~~ 141 (200)
T cd02508 97 DAIYQNLDYIERSDPEYVLILSGDH--IYNMDYREMLDFHIESGADI 141 (200)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCE--EEecCHHHHHHHHHHcCCCE
Confidence 889999988853 346788999999 67788999998877665533
No 79
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.25 E-value=2.3e-10 Score=98.51 Aligned_cols=197 Identities=13% Similarity=0.070 Sum_probs=118.9
Q ss_pred CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cCC-----c-EEEe--cCC-------ccHH
Q 028320 1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV-----D-LKFS--LPG-------KERQ 63 (210)
Q Consensus 1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~~-----~-v~~~--~~~-------~~~~ 63 (210)
+||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+.+.. +.. . +... .+. .+..
T Consensus 24 ~PK~Llpi~gk~plI~~~L~~l~~~G-i~~vivv~~~~~-~~i~~~l~~~~~~~~~~~g~~~i~~~~~~~~~~~~~lGTa 101 (429)
T PRK02862 24 RAKPAVPLAGKYRLIDIPISNCINSG-INKIYVLTQFNS-ASLNRHISQTYNFDGFSGGFVEVLAAQQTPENPSWFQGTA 101 (429)
T ss_pred CcceeeEECCeeEEeHHHHHHHHHCC-CCEEEEEecCCH-HHHHHHHhcCcCccccCCCEEEEeCCcccCCCCccccCcH
Confidence 59999999999 99999999999986 899999999865 445555542 110 0 1111 110 2347
Q ss_pred HHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCe--EEeeecc--cc----eEEccCCCceeeecCcc
Q 028320 64 DSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPAK--AT----IKEANSESFVVRTLDRK 134 (210)
Q Consensus 64 ~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~--~~~~~~~--~~----~~~~~~~g~v~~~~~r~ 134 (210)
++++.++..+.. +.+.++++.||. +. ..+++.+++.+.+.++. +.+.++. ++ +...+++|.+..+.+..
T Consensus 102 ~al~~a~~~l~~~~~~~~lVl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g~V~~~~Ekp 179 (429)
T PRK02862 102 DAVRKYLWHFQEWDVDEYLILSGDQ-LY-RMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEKP 179 (429)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCE-EE-eCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCCcEEEEEECC
Confidence 889999888853 246789999999 44 47888999877666552 3333332 11 12234456665443211
Q ss_pred C------------------------eeeecC-CcccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCCCC
Q 028320 135 T------------------------LWEMQT-PQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYTN 187 (210)
Q Consensus 135 ~------------------------~~~~~~-P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~v~~v~~~~~~ 187 (210)
. .+.+.+ -++|....|..++.... ....+.. .++. ..+.++.....+..+
T Consensus 180 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~~~~~~--dil~~l~~~~~v~~~~~~g~w 256 (429)
T PRK02862 180 KGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-EYTDFGK--EIIPEAIRDYKVQSYLFDGYW 256 (429)
T ss_pred CccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC-ChhhhHH--HHHHHHhccCcEEEEEeCCEE
Confidence 0 112222 25566666655544321 0011111 2221 234566655556679
Q ss_pred ccccChhhHHHHHHHhh
Q 028320 188 IKVTTPDDLLIAERILN 204 (210)
Q Consensus 188 ~dIdt~~Dl~~a~~~~~ 204 (210)
.||+|+++|..++..+.
T Consensus 257 ~digt~~~y~~an~~l~ 273 (429)
T PRK02862 257 EDIGTIEAFYEANLALT 273 (429)
T ss_pred EeCCCHHHHHHHHHHHH
Confidence 99999999999987765
No 80
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.23 E-value=4.7e-10 Score=94.41 Aligned_cols=200 Identities=16% Similarity=0.130 Sum_probs=118.5
Q ss_pred CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cCC------cEEEec------C---CccHH
Q 028320 1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV------DLKFSL------P---GKERQ 63 (210)
Q Consensus 1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~~------~v~~~~------~---~~~~~ 63 (210)
.||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+.+.+ ++. .+.+.. . ..+..
T Consensus 19 ~pK~llpv~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~ 96 (361)
T TIGR02091 19 RAKPAVPFGGKYRIIDFPLSNCINSG-IRRIGVLTQYKS-HSLNRHIQRGWDFDGFIDGFVTLLPAQQRESGTDWYQGTA 96 (361)
T ss_pred CccccceecceeeEeeehhhhhhhcC-CceEEEEeccCh-HHHHHHHHhccCccCccCCCEEEeCCcccCCCCccccCcH
Confidence 59999999999 89999999999986 899999999876 445555542 221 122221 0 02236
Q ss_pred HHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecc--cc----eEEccCCCceeeecCc-
Q 028320 64 DSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAK--AT----IKEANSESFVVRTLDR- 133 (210)
Q Consensus 64 ~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~--~~----~~~~~~~g~v~~~~~r- 133 (210)
++++.++..+.. +.+.++++.||+ +....+.++++.+...++ .+.+.++. ++ +...+++|.+..+.+.
T Consensus 97 ~al~~a~~~~~~~~~~~~lv~~gD~--l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp 174 (361)
T TIGR02091 97 DAVYQNLDLIEDYDPEYVLILSGDH--IYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEKP 174 (361)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCE--EEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECCCCCEEEEEECC
Confidence 888889888853 346788899998 556678888887765544 33333331 11 2233445556543321
Q ss_pred ----cC-----eeeecC-CcccChHHHHHHHHHHHhcC---CCC-CcHHHHHHhCCCCeEEEecCCCCccccChhhHHHH
Q 028320 134 ----KT-----LWEMQT-PQVIKPDLLKKGFELVNREG---LEV-TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIA 199 (210)
Q Consensus 134 ----~~-----~~~~~~-P~~f~~~~l~~~~~~~~~~~---~~~-~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a 199 (210)
+. .+...+ -+.|....|...+......+ ..+ ++....+... .++.....+..+.||+|++||..|
T Consensus 175 ~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~-~~v~~~~~~~~w~digt~~~~~~a 253 (361)
T TIGR02091 175 ANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEE-GSVQAYLFSGYWRDVGTIDSFWEA 253 (361)
T ss_pred CCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhc-CceEEEeeCCEEEECCCHHHHHHH
Confidence 11 001222 24566655555444322211 111 2222222222 356655555678999999999999
Q ss_pred HHHhhc
Q 028320 200 ERILNL 205 (210)
Q Consensus 200 ~~~~~~ 205 (210)
...+-.
T Consensus 254 ~~~~l~ 259 (361)
T TIGR02091 254 NMDLVS 259 (361)
T ss_pred HHHHhC
Confidence 776554
No 81
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.23 E-value=1.1e-09 Score=94.10 Aligned_cols=199 Identities=15% Similarity=0.114 Sum_probs=119.9
Q ss_pred CCccceecCCee-hHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cCC-------cEEEec--C-------CccH
Q 028320 1 MPKQYLPLLGQP-IALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV-------DLKFSL--P-------GKER 62 (210)
Q Consensus 1 ~~K~l~~i~gkp-li~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~~-------~v~~~~--~-------~~~~ 62 (210)
+||+|+|++|+| ||+|+++.+.+++ +++|+|++++.. +.+.+.+.+ ++. .+.+.. . ..+.
T Consensus 36 ~PK~llpv~gkp~lI~~~l~~l~~~G-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~e~~~lGT 113 (425)
T PRK00725 36 RAKPAVYFGGKFRIIDFALSNCINSG-IRRIGVLTQYKA-HSLIRHIQRGWSFFREELGEFVDLLPAQQRVDEENWYRGT 113 (425)
T ss_pred CcceeEEECCEEEEhHHHHHHHHHCC-CCeEEEEecCCH-HHHHHHHHhhhcccccCCCCeEEEeCCcccCCCCccccCc
Confidence 599999999997 9999999999985 899999999876 445554432 210 111111 0 0234
Q ss_pred HHHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeec--ccc----eEEccCCCceeeecCc
Q 028320 63 QDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--KAT----IKEANSESFVVRTLDR 133 (210)
Q Consensus 63 ~~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~--~~~----~~~~~~~g~v~~~~~r 133 (210)
.++++.++..++. ..+.++++.||. +...++.++++.+...++ .+.+.++ .++ ....+++|.+..+.++
T Consensus 114 a~al~~a~~~l~~~~~d~~lVl~gD~--l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~~V~~~~EK 191 (425)
T PRK00725 114 ADAVYQNLDIIRRYDPKYVVILAGDH--IYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDRITAFVEK 191 (425)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCe--EeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCCCEEEEEEC
Confidence 7888999888853 247789999998 556789999988776655 3333232 221 2223445666544432
Q ss_pred cC----------eeeecC-CcccChHHHHHHHHHHHhc--C-CCC-CcHHHHHHhCCCCeEEEec-----------CCCC
Q 028320 134 KT----------LWEMQT-PQVIKPDLLKKGFELVNRE--G-LEV-TDDVSIVEHLKHPVYITEG-----------SYTN 187 (210)
Q Consensus 134 ~~----------~~~~~~-P~~f~~~~l~~~~~~~~~~--~-~~~-~d~~~~~~~~g~~v~~v~~-----------~~~~ 187 (210)
.. .....+ -++|+...|..++...... + .++ +|-...+...+ ++..... +..+
T Consensus 192 p~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~-~v~~~~~~g~~~~~~~~~~gyw 270 (425)
T PRK00725 192 PANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEG-KVYAHPFSDSCVRSDPEEEPYW 270 (425)
T ss_pred CCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccC-cEEEEEecCCccccccccCCeE
Confidence 10 122222 2567777666555432211 1 222 33333232233 4443222 2468
Q ss_pred ccccChhhHHHHHHHhh
Q 028320 188 IKVTTPDDLLIAERILN 204 (210)
Q Consensus 188 ~dIdt~~Dl~~a~~~~~ 204 (210)
.||.|+++|..+...+-
T Consensus 271 ~digt~~~y~~an~~ll 287 (425)
T PRK00725 271 RDVGTLDAYWQANLDLA 287 (425)
T ss_pred EECCCHHHHHHHHHHHc
Confidence 99999999999987654
No 82
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.22 E-value=9.3e-10 Score=85.73 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=85.5
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~--~~~~~~si~~~l~~~~~ 75 (210)
+||+|+|++|+|||.|+++.+..++ +++|+|++++.. +.+.+.+.+ ++..+.++.+ ..+..+++..+++.+.
T Consensus 19 ~pK~ll~v~g~pli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~- 95 (217)
T cd04181 19 RPKPLLPIAGKPILEYIIERLARAG-IDEIILVVGYLG-EQIEEYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFLG- 95 (217)
T ss_pred CCccccEECCeeHHHHHHHHHHHCC-CCEEEEEeccCH-HHHHHHHcChhhcCceEEEEeCCCCCccHHHHHHhhhhcC-
Confidence 4899999999999999999999986 899999999864 456665554 3445555433 2345788999998883
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc----eEEccCCCceeeec
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT----IKEANSESFVVRTL 131 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~----~~~~~~~g~v~~~~ 131 (210)
.+.++++.||+- . ...+..+++.+...++ .+.+.+..++ ....+++|.+..+.
T Consensus 96 -~~~~lv~~~D~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~v~~~~ 154 (217)
T cd04181 96 -DDDFLVVNGDVL-T-DLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDDGRVTRFV 154 (217)
T ss_pred -CCCEEEEECCee-c-CcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEcCCCcEEEEE
Confidence 467899999984 3 4457777776665543 4444444322 12234446665443
No 83
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.20 E-value=7.5e-10 Score=95.53 Aligned_cols=201 Identities=12% Similarity=0.032 Sum_probs=121.0
Q ss_pred CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-c--CCc-------EEE--ecC-------Cc
Q 028320 1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-I--NVD-------LKF--SLP-------GK 60 (210)
Q Consensus 1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~--~~~-------v~~--~~~-------~~ 60 (210)
+||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+.+++ + +.. +.+ ..+ ..
T Consensus 24 ~PK~llpv~g~~plId~~L~~l~~~G-i~~i~iv~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~l 101 (436)
T PLN02241 24 RAKPAVPIGGNYRLIDIPMSNCINSG-INKIYVLTQFNS-ASLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEKGWFQ 101 (436)
T ss_pred CcccceEeCCcceEehHHHHHHHhCC-CCEEEEEeccCH-HHHHHHHhccCCCCCCcccCCCCEEEcCCcccCCCCcccc
Confidence 59999999997 99999999999985 899999999875 455555543 1 100 111 111 11
Q ss_pred cHHHHHHHHHHcccCC----CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCe--EEeeeccc------ceEEccCCCcee
Q 028320 61 ERQDSVYSGLQEVDFN----SELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPAKA------TIKEANSESFVV 128 (210)
Q Consensus 61 ~~~~si~~~l~~~~~~----~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~--~~~~~~~~------~~~~~~~~g~v~ 128 (210)
+..++++.++..++.. .+.++++.||. +...++.++++...+.++. +...++.. .+...+++|.+.
T Consensus 102 Gt~~al~~~~~~~~~~~~~~~~~~lv~~gD~--v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~~v~ 179 (436)
T PLN02241 102 GTADAVRQFLWLFEDAKNKNVEEVLILSGDH--LYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRII 179 (436)
T ss_pred CcHHHHHHHHHHHHhcccCCCCEEEEecCCe--EEccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCCCCEE
Confidence 2357777776655421 36788899998 4456899999888776663 23333321 122234456665
Q ss_pred eecCc---cC---------------------eeeecC-CcccChHHHHHHHHHHHhcCCC-CCcHHHHHHhCCCCeEEEe
Q 028320 129 RTLDR---KT---------------------LWEMQT-PQVIKPDLLKKGFELVNREGLE-VTDDVSIVEHLKHPVYITE 182 (210)
Q Consensus 129 ~~~~r---~~---------------------~~~~~~-P~~f~~~~l~~~~~~~~~~~~~-~~d~~~~~~~~g~~v~~v~ 182 (210)
++.+. .. .....+ -+.|..+.|..+++........ ..|....+...|.++....
T Consensus 180 ~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~~l~~~g~~v~~~~ 259 (436)
T PLN02241 180 EFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQAYL 259 (436)
T ss_pred EEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHHHHhhcCCeEEEEe
Confidence 43321 10 012222 2456666665555433211111 2233333344566777655
Q ss_pred cCCCCccccChhhHHHHHHHhhc
Q 028320 183 GSYTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 183 ~~~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
.+..+.||++++||..+...+-.
T Consensus 260 ~~gyw~dIg~~~~y~~a~~~~l~ 282 (436)
T PLN02241 260 FDGYWEDIGTIKSFYEANLALTK 282 (436)
T ss_pred eCCEEEECCCHHHHHHHHHHHhc
Confidence 55689999999999999987653
No 84
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.09 E-value=1e-09 Score=85.86 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=76.3
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC------CcEEEecC--CccHHHHHHHHHHc
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN------VDLKFSLP--GKERQDSVYSGLQE 72 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~------~~v~~~~~--~~~~~~si~~~l~~ 72 (210)
.||+|+|++|+|||+|+++.+.+++ +++|+|+++++..+.+++.++++. ..+.+... ..+..++++.+...
T Consensus 21 ~pK~Llpv~g~pli~~~l~~l~~~g-~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~ 99 (214)
T cd04198 21 IPKALLPVANKPMIWYPLDWLEKAG-FEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKK 99 (214)
T ss_pred CCcccCEECCeeHHHHHHHHHHHCC-CCeEEEEECHHHHHHHHHHHHhcccccCcceeEEEecCCCCcChHHHHHHHHhh
Confidence 4899999999999999999999875 899999999765445666666541 12222222 22347888888877
Q ss_pred ccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEE
Q 028320 73 VDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVL 110 (210)
Q Consensus 73 ~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~ 110 (210)
+. .+ ++++.|| ++....+..+++.+...++.++
T Consensus 100 i~--~d-~lv~~~D--~i~~~~l~~~l~~h~~~~~~~t 132 (214)
T cd04198 100 IK--KD-FLVLSCD--LITDLPLIELVDLHRSHDASLT 132 (214)
T ss_pred cC--CC-EEEEeCc--cccccCHHHHHHHHhccCCcEE
Confidence 63 34 6777899 7888999999998877665443
No 85
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.06 E-value=2.7e-09 Score=86.64 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=74.9
Q ss_pred CCccceecCC-eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe--cCCccHHHHHHHHHHcccC--
Q 028320 1 MPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDF-- 75 (210)
Q Consensus 1 ~~K~l~~i~g-kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~--~~~~~~~~si~~~l~~~~~-- 75 (210)
+||+|++++| +|||+|+++++...+.+++|+|+|+......+++.++..+..+.++ +...+...++..|+..+..
T Consensus 22 ~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~~~~~~~ii~ep~~~gTa~ai~~a~~~~~~~~ 101 (274)
T cd02509 22 YPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEGLPEENIILEPEGRNTAPAIALAALYLAKRD 101 (274)
T ss_pred CCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhhcCCCceEEECCCCCCcHHHHHHHHHHHHhcC
Confidence 5999999999 9999999999998855899999999765445555555422233333 2233447788888777642
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHH
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDA 102 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~ 102 (210)
..+.++++.+|+++.+...+.++++..
T Consensus 102 ~~~~vlVl~~D~~i~~~~~f~~~l~~~ 128 (274)
T cd02509 102 PDAVLLVLPSDHLIEDVEAFLKAVKKA 128 (274)
T ss_pred CCCeEEEecchhcccCHHHHHHHHHHH
Confidence 346899999999998887777776543
No 86
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.94 E-value=9.8e-08 Score=77.32 Aligned_cols=196 Identities=13% Similarity=0.141 Sum_probs=116.9
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC----CcEEEecC-----CccHHHHHHHHHH
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN----VDLKFSLP-----GKERQDSVYSGLQ 71 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~----~~v~~~~~-----~~~~~~si~~~l~ 71 (210)
+||++.|++++|||.|.++++..++ +++|++.+............+.|+ +++.+..+ .++..+.++..|.
T Consensus 30 ~pKPlVpfgn~pmI~hqieal~nsG-i~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~eteplgtaGpl~laR~~L~ 108 (371)
T KOG1322|consen 30 RPKPLVPFGNKPMILHQIEALINSG-ITKIVLATQYNSESLNRHLSKAYGKELGVEILASTETEPLGTAGPLALARDFLW 108 (371)
T ss_pred CCCcccccCcchhhHHHHHHHHhCC-CcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEeccCCCcccchHHHHHHHhh
Confidence 5899999999999999999999996 999999999987434555666554 34433322 2223444454443
Q ss_pred cccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccceEE----ccC-CCceeeecCc-cCeeeec---
Q 028320 72 EVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATIKE----ANS-ESFVVRTLDR-KTLWEMQ--- 140 (210)
Q Consensus 72 ~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~~~~----~~~-~g~v~~~~~r-~~~~~~~--- 140 (210)
..+ +. .++++.+|. +-.-.+.++++....+++ .+.+.++.++.++ .++ .|.|.+.++. ..+...+
T Consensus 109 ~~~-~~-~ffVLnsDv--i~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d~~~grV~~F~EKPkd~vsnkina 184 (371)
T KOG1322|consen 109 VFE-DA-PFFVLNSDV--ICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIRFVEKPKDLVSNKINA 184 (371)
T ss_pred hcC-CC-cEEEecCCe--eecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEEecCCCceeEehhCchhhhhccccc
Confidence 332 11 455555542 222335788888877765 6778888776332 344 6777665542 2222111
Q ss_pred CCcccChHHHHHHHHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320 141 TPQVIKPDLLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 141 ~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
.-++|....|.+......+ +..+..-....++++..-..+..+.||-+|.|+-.+-.++-+
T Consensus 185 GiYi~~~~vL~ri~~~ptS----iekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~ 245 (371)
T KOG1322|consen 185 GIYILNPEVLDRILLRPTS----IEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLR 245 (371)
T ss_pred eEEEECHHHHhHhhhcccc----hhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHh
Confidence 1245665555554322111 111111112234556554555689999999999988777653
No 87
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.91 E-value=8.2e-08 Score=83.52 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=71.1
Q ss_pred CCccceecCC-eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcE-EEecC--CccHHHHHHHHHHccc--
Q 028320 1 MPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDL-KFSLP--GKERQDSVYSGLQEVD-- 74 (210)
Q Consensus 1 ~~K~l~~i~g-kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v-~~~~~--~~~~~~si~~~l~~~~-- 74 (210)
+||||+++.| +|||+|+++++...+ +++++|||+......+.+.++.++.+. .++.. ..+...++..|...+.
T Consensus 22 ~PK~~l~l~g~~~ll~~tl~~l~~~~-~~~iviv~~~~~~~~~~~~l~~~~~~~~~~i~Ep~~~gTa~ai~~aa~~~~~~ 100 (468)
T TIGR01479 22 YPKQFLALVGDLTMLQQTLKRLAGLP-CSSPLVICNEEHRFIVAEQLREIGKLASNIILEPVGRNTAPAIALAALLAARR 100 (468)
T ss_pred CCCceeEcCCCCcHHHHHHHHHhcCC-CcCcEEecCHHHHHHHHHHHHHcCCCcceEEecccccCchHHHHHHHHHHHHH
Confidence 4999999976 899999999998875 789999998765445666666665332 23221 2223455554444442
Q ss_pred -CCCCEEEEEeCCCCCCCHHHHHHHHHHH
Q 028320 75 -FNSELVCIHDSARPLVLSKDVQKVLMDA 102 (210)
Q Consensus 75 -~~~d~vl~~~~d~Pli~~~~i~~~i~~~ 102 (210)
...+.++++.+|+|+.+.+.+.++++.+
T Consensus 101 ~~~~~~vlVl~~D~~i~~~~~f~~~l~~~ 129 (468)
T TIGR01479 101 NGEDPLLLVLAADHVITDEDAFQAAVKLA 129 (468)
T ss_pred HCCCcEEEEecCceeecCHHHHHHHHHHH
Confidence 1246789999999999988888888764
No 88
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=98.82 E-value=3.9e-07 Score=72.41 Aligned_cols=193 Identities=15% Similarity=0.136 Sum_probs=121.5
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHH----------H------------hhc--CCcEEEe
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET----------K------------EKI--NVDLKFS 56 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~----------~------------~~~--~~~v~~~ 56 (210)
+||-++|+-+||+|+|+++.+.+++ +++|++||+.... .|.+. + ++. ++.+.++
T Consensus 25 iPKEMLPIvdKP~IqYiVeEa~~aG-Ie~i~iVTgr~K~-~IeDhFD~s~ELE~~L~~~~K~~~L~~v~~i~~~~~i~~v 102 (291)
T COG1210 25 IPKEMLPIVDKPLIQYIVEEAVAAG-IEEILIVTGRGKR-AIEDHFDTSYELENTLEKRGKRELLEEVRSIPPLVTISFV 102 (291)
T ss_pred CchhhccccCchhHHHHHHHHHHcC-CCEEEEEecCCcc-hHHHhCcCcHHHHHHHHHhCHHHHHHHHHhcccCceEEEE
Confidence 5999999999999999999999997 9999999998631 12111 1 111 1234566
Q ss_pred cCCc--cHHHHHHHHHHcccCCCCEEEEEeCCCCCCC-HHHHHHHHHHHHhcCC-eEEeeecc--cc--eEEcc-----C
Q 028320 57 LPGK--ERQDSVYSGLQEVDFNSELVCIHDSARPLVL-SKDVQKVLMDALRVGA-AVLGVPAK--AT--IKEAN-----S 123 (210)
Q Consensus 57 ~~~~--~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~-~~~i~~~i~~~~~~~~-~~~~~~~~--~~--~~~~~-----~ 123 (210)
.+.. +..+++..|=.++. .+.+.++.+|.=+.+ +..+.+|++.++.+++ ++.+.++. +. +..++ .
T Consensus 103 RQ~e~~GLGhAVl~A~~~vg--~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~ev~~e~v~kYGvi~~g~~~~ 180 (291)
T COG1210 103 RQKEPLGLGHAVLCAKPFVG--DEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVEEVPPEDVSKYGVIDPGEPVE 180 (291)
T ss_pred ecCCCCcchhHHHhhhhhcC--CCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEEECCHHHCcccceEecCcccc
Confidence 5533 34788988888886 455666777776665 7899999999998876 55555553 11 11111 1
Q ss_pred CC--ceeeec-------CccCeee----ecCCcccChHHHHHHHHHH--HhcC-CCCCcHHHHHHhCCCCeEEEecCCCC
Q 028320 124 ES--FVVRTL-------DRKTLWE----MQTPQVIKPDLLKKGFELV--NREG-LEVTDDVSIVEHLKHPVYITEGSYTN 187 (210)
Q Consensus 124 ~g--~v~~~~-------~r~~~~~----~~~P~~f~~~~l~~~~~~~--~~~~-~~~~d~~~~~~~~g~~v~~v~~~~~~ 187 (210)
++ .+...+ .+|++.. +.+|.+|. .++.. +..| +.+||....+... ..+.........
T Consensus 181 ~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd------~L~~~~~G~ggEiQLTDai~~L~~~-~~v~a~~~~Gkr 253 (291)
T COG1210 181 KGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFD------ILEETKPGAGGEIQLTDAIKKLLKK-EPVLAYVFEGKR 253 (291)
T ss_pred CCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHH------HHhhCCCCCCCEeeHHHHHHHHHhh-CcEEEEEecccE
Confidence 22 222222 2455432 34555543 34332 1122 5678875555443 455555555678
Q ss_pred ccccChhhHHHHHHHhh
Q 028320 188 IKVTTPDDLLIAERILN 204 (210)
Q Consensus 188 ~dIdt~~Dl~~a~~~~~ 204 (210)
+|+.++..|..+.--+.
T Consensus 254 yD~G~k~Gyi~a~v~~~ 270 (291)
T COG1210 254 YDCGSKLGYIKANVEFA 270 (291)
T ss_pred EccCCcccHHHHHHHHH
Confidence 99999999988765443
No 89
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.80 E-value=6.8e-08 Score=75.68 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=65.9
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC--------CcEEEecCCc--cHHHHHHHH-
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--------VDLKFSLPGK--ERQDSVYSG- 69 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~--------~~v~~~~~~~--~~~~si~~~- 69 (210)
+||+|+|++|+|||.|+++.+.+++ +++|+|++++.. +.+.+.+++.. ..+.++.+.. +..+++...
T Consensus 21 ~pK~llpi~g~piI~~~l~~l~~~G-i~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~al~~~~ 98 (217)
T cd04197 21 KPRCLLPLANVPLIDYTLEFLALNG-VEEVFVFCCSHS-DQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDALRDLD 98 (217)
T ss_pred CCceeeEECCEehHHHHHHHHHHCC-CCeEEEEeCCCH-HHHHHHHhhccccccccCcceEEEEeCCCcCccchHHHHHh
Confidence 5999999999999999999999986 899999999764 56777665531 2344443311 123333221
Q ss_pred -HHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320 70 -LQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 70 -l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~ 104 (210)
...+ .+.++++.||. +....+..+++.+.+
T Consensus 99 ~~~~~---~~~flv~~gD~--i~~~dl~~~l~~h~~ 129 (217)
T cd04197 99 AKGLI---RGDFILVSGDV--VSNIDLKEILEEHKE 129 (217)
T ss_pred hcccc---CCCEEEEeCCe--eeccCHHHHHHHHHH
Confidence 1112 23467888995 556788899988765
No 90
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=98.78 E-value=3.5e-08 Score=76.82 Aligned_cols=147 Identities=16% Similarity=0.234 Sum_probs=66.9
Q ss_pred ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh-hcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCC
Q 028320 12 PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLV 90 (210)
Q Consensus 12 pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~-~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli 90 (210)
-|+.+|+.++.. ++ ++||+.++.. .+... .+|+.+..- ++.+...++..|+... ..+.++++.+|.|++
T Consensus 32 aMl~Dvl~al~~---v~-v~vVs~d~~v---~~~a~~~~g~~vl~d-~~~gLN~Al~~a~~~~--~~~~vlvl~aDLPll 101 (217)
T PF01983_consen 32 AMLRDVLAALRA---VD-VVVVSRDPEV---AALARARLGAEVLPD-PGRGLNAALNAALAAA--GDDPVLVLPADLPLL 101 (217)
T ss_dssp HHHHHHHHHHHH----S-EEEEES--S----TTTTT---SSEEEE----S-HHHHHHHHHH-H----S-EEEE-S--TT-
T ss_pred HHHHHHHHHHHh---cC-eEEeccchhh---hhhhhhccCCeEecC-CCCCHHHHHHHHHhcc--CCCceEEeecCCccC
Confidence 488999999976 57 8888877653 23333 456554322 2244455666664332 357789999999999
Q ss_pred CHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccC----hHHHHHHHHHHHhcCCCCCc
Q 028320 91 LSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIK----PDLLKKGFELVNREGLEVTD 166 (210)
Q Consensus 91 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~----~~~l~~~~~~~~~~~~~~~d 166 (210)
+++.|+.++......+ +.++|-.+ +| ++..... |..|+ ...+. .
T Consensus 102 ~~~dl~~~l~~~~~~~--vviap~r~-------gG--------TN~L~~~-~~~~~~~fg~~S~~--------------~ 149 (217)
T PF01983_consen 102 TPEDLDALLAAAGRAD--VVIAPDRG-------GG--------TNALLLR-PDAFPFRFGGGSFA--------------R 149 (217)
T ss_dssp -HHHHHHHCT-SS--S--EEEEE-GG-------G---------EEEEEES-CCC-----SSSHHH--------------H
T ss_pred CHHHHHHHHhccCCCC--EEEeCCCC-------CC--------eEEEEec-CCCCCCCcChhHHH--------------H
Confidence 9999999997654332 33344321 22 1111111 33322 22221 1
Q ss_pred HHHHHHhCCCCeEEEecCCCCccccChhhHHHHH
Q 028320 167 DVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAE 200 (210)
Q Consensus 167 ~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~ 200 (210)
.....+..|..+.++....-.+|||||+||..+-
T Consensus 150 H~~~A~~~gl~~~v~~s~~l~~DVDtp~DL~ell 183 (217)
T PF01983_consen 150 HLRAARERGLSVAVVDSFRLALDVDTPEDLAELL 183 (217)
T ss_dssp HHHHHHCTT--EEE---TTTT----SCCHHHHHH
T ss_pred HHHHHHHCCCeEEEEccCceeecCCCHHHHHHHH
Confidence 2334445677777777777899999999998653
No 91
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.67 E-value=1.8e-07 Score=73.30 Aligned_cols=94 Identities=18% Similarity=0.182 Sum_probs=65.1
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh-hc------CCcE--EEecC--CccHHHHHHHH
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KI------NVDL--KFSLP--GKERQDSVYSG 69 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~-~~------~~~v--~~~~~--~~~~~~si~~~ 69 (210)
.||+|+|++|+|||.|+++.+.+++ +++|+|+++++.. .+.+.+. .+ +..+ .+..+ ..+...++..+
T Consensus 21 ~pK~llpv~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Gta~~l~~~ 98 (216)
T cd02507 21 IPKALLPVANVPLIDYTLEWLEKAG-VEEVFVVCCEHSQ-AIIEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDI 98 (216)
T ss_pred CCcccceECCEEHHHHHHHHHHHCC-CCeEEEEeCCcHH-HHHHHHHhcccccccCCceEEEEEccCCCCCccHHHHHHH
Confidence 4899999999999999999999886 8999999998863 3333333 22 1112 22222 22236677777
Q ss_pred HHcccCCCCEEEEEeCCCCCCCHHHHHHHHHH
Q 028320 70 LQEVDFNSELVCIHDSARPLVLSKDVQKVLMD 101 (210)
Q Consensus 70 l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~ 101 (210)
...+. .+ ++++.|| ++..-.+..+++.
T Consensus 99 ~~~i~--~d-flv~~gD--~i~~~~l~~~l~~ 125 (216)
T cd02507 99 RGLIR--SD-FLLLSCD--LVSNIPLSELLEE 125 (216)
T ss_pred hhcCC--CC-EEEEeCC--EeecCCHHHHHHH
Confidence 77764 34 5778898 5667778888864
No 92
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=98.63 E-value=1.3e-06 Score=65.61 Aligned_cols=149 Identities=15% Similarity=0.200 Sum_probs=88.7
Q ss_pred ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCC
Q 028320 12 PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL 91 (210)
Q Consensus 12 pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~ 91 (210)
-|+.+++.++... +.+|.|+|.+... ..... +.++... .....++..++..++.. +-++++.+|.|+++
T Consensus 32 aML~dvi~Al~~~--~~~i~Vvtpde~~---~~~a~----~~~vl~d-~dLN~Ai~aa~~~~~~p-~~v~vvmaDLPLl~ 100 (210)
T COG1920 32 AMLVDVLGALAGV--LGEITVVTPDEEV---LVPAT----KLEVLAD-PDLNTAINAALDEIPLP-SEVIVVMADLPLLS 100 (210)
T ss_pred HHHHHHHHHhhhh--cCCceEEcCChHh---hhhcc----cceeeec-cchHHHHHHHHhhCCCC-cceEEEecccccCC
Confidence 4889999999764 6899999987653 12111 1122222 22456677777777633 55788899999999
Q ss_pred HHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCc-cCeeeecCCcccChHHHHHHHHHHHhcCCCCCcHHHH
Q 028320 92 SKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDR-KTLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSI 170 (210)
Q Consensus 92 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r-~~~~~~~~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~ 170 (210)
++.|+++++.....+.++ .|-.. +| -+..+-| +.+. |. |. +..|.+....
T Consensus 101 ~~~i~~~~~~~~d~dvvi--aP~~g-------GG-Tn~L~~r~~~~~----~~-y~--------------g~SF~~Hl~~ 151 (210)
T COG1920 101 PEHIERALSAAKDADVVI--APGRG-------GG-TNVLFARKSAFR----PR-YG--------------GVSFLRHLEE 151 (210)
T ss_pred HHHHHHHHHhcCCCcEEE--ecCCC-------Cc-eEEEEEeccccc----cc-cc--------------CccHHHHHHH
Confidence 999999998766543322 23211 12 0001111 1111 11 11 1112333455
Q ss_pred HHhCCCCeEEEecCCCCccccChhhHHHHH
Q 028320 171 VEHLKHPVYITEGSYTNIKVTTPDDLLIAE 200 (210)
Q Consensus 171 ~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~ 200 (210)
.++.|..+.+.+......|||||+||..+-
T Consensus 152 Ark~G~~~~~~dSf~l~~DVDtpeDL~e~~ 181 (210)
T COG1920 152 ARKRGLVVLTYDSFGLSADVDTPEDLVEAF 181 (210)
T ss_pred HHHcCCEEEEecccceecCCCCHHHHHHHH
Confidence 566777777666666789999999997664
No 93
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=98.47 E-value=4.1e-07 Score=68.42 Aligned_cols=82 Identities=23% Similarity=0.295 Sum_probs=59.3
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCcc--HHHHHHHHHHcccCCCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE--RQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~--~~~si~~~l~~~~~~~d 78 (210)
.||.|++++|+|||++.|+.+++++ ++.|+||||.-. +.+.=+-.+|++...+-+...+ ...|+..|...++ ..
T Consensus 21 tpK~LlkV~g~plIErqI~~L~e~g-I~dI~IVvGYlk-E~FeYLkdKy~vtLvyN~kY~~yNn~ySlyla~d~l~--nt 96 (231)
T COG4750 21 TPKSLLKVNGEPLIERQIEQLREAG-IDDITIVVGYLK-EQFEYLKDKYDVTLVYNPKYREYNNIYSLYLARDFLN--NT 96 (231)
T ss_pred CChHHHHhcCcccHHHHHHHHHHCC-CceEEEEeeehH-HHHHHHHHhcCeEEEeCchHHhhhhHHHHHHHHHHhc--cc
Confidence 4899999999999999999999996 999999999975 4554444567644333332222 2678888988886 23
Q ss_pred EEEEEeCCCC
Q 028320 79 LVCIHDSARP 88 (210)
Q Consensus 79 ~vl~~~~d~P 88 (210)
+ ++++|.-
T Consensus 97 Y--iidsDny 104 (231)
T COG4750 97 Y--IIDSDNY 104 (231)
T ss_pred E--EeccchH
Confidence 4 3556543
No 94
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=5.5e-07 Score=74.42 Aligned_cols=101 Identities=19% Similarity=0.265 Sum_probs=68.7
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh-hcCCcEE-----Ee-cC--CccHHHHHHHHHH
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KINVDLK-----FS-LP--GKERQDSVYSGLQ 71 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~-~~~~~v~-----~~-~~--~~~~~~si~~~l~ 71 (210)
+||+|+|++++|||.|.+..+.+++ |.+++|++..++...+.+++. .+..+.. +- .+ .-+..++++.--.
T Consensus 30 ~pKaLLPIgn~PMi~YpL~~L~~~g-fteiiVv~~e~e~~~i~~al~~~~~l~~~~~~v~ip~~~~~d~gtadsLr~Iy~ 108 (433)
T KOG1462|consen 30 LPKALLPIGNKPMILYPLNSLEQAG-FTEIIVVVNEDEKLDIESALGSNIDLKKRPDYVEIPTDDNSDFGTADSLRYIYS 108 (433)
T ss_pred cchhhcccCCcceeeeehhHHHhcC-CeEEEEEecHHHHHHHHHHHhcCCcccccccEEEeecccccccCCHHHHhhhhh
Confidence 5999999999999999999999986 999999999876666766663 3332221 11 11 1123555555444
Q ss_pred cccCCC-CEEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 72 EVDFNS-ELVCIHDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 72 ~~~~~~-d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
.+. + |+ +++.|| |++--.+..+++.+..+++
T Consensus 109 kik--S~Df-lvlsCD--~Vtdv~l~~lvd~FR~~d~ 140 (433)
T KOG1462|consen 109 KIK--SEDF-LVLSCD--FVTDVPLQPLVDKFRATDA 140 (433)
T ss_pred hhc--cCCE-EEEecc--cccCCCcHHHHHHHhccCh
Confidence 444 4 55 556665 6777777777777776554
No 95
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.13 E-value=1.8e-05 Score=68.89 Aligned_cols=101 Identities=15% Similarity=0.253 Sum_probs=67.7
Q ss_pred CCccceecCC-eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCC---cEEEecCCccHHHHHHHHHHccc-C
Q 028320 1 MPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV---DLKFSLPGKERQDSVYSGLQEVD-F 75 (210)
Q Consensus 1 ~~K~l~~i~g-kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~---~v~~~~~~~~~~~si~~~l~~~~-~ 75 (210)
.||||+++.| +|||+++++++...+ +.+.+|||+......+++.+..++. .+..-+-+.++..++..|.-.+. .
T Consensus 27 ~PKq~l~l~~~~sllq~t~~r~~~~~-~~~~iivt~~~~~~~v~~ql~~~~~~~~~ii~EP~~rnTApaialaa~~~~~~ 105 (478)
T PRK15460 27 YPKQFLCLKGDLTMLQTTICRLNGVE-CESPVVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAAKRH 105 (478)
T ss_pred CCcceeECCCCCCHHHHHHHHHHhCC-CCCcEEEeCHHHHHHHHHHHHhcCCccccEEecCCCCChHHHHHHHHHHHHHh
Confidence 4999999955 799999999998765 5555577887765666666655541 33333334455566544443332 1
Q ss_pred --C-CCEEEEEeCCCCCCCHHHHHHHHHHH
Q 028320 76 --N-SELVCIHDSARPLVLSKDVQKVLMDA 102 (210)
Q Consensus 76 --~-~d~vl~~~~d~Pli~~~~i~~~i~~~ 102 (210)
+ ...++++.+|+-.-+.+.+.+.+...
T Consensus 106 ~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A 135 (478)
T PRK15460 106 SPESDPLMLVLAADHVIADEDAFRAAVRNA 135 (478)
T ss_pred cCCCCCeEEEeccccccCCHHHHHHHHHHH
Confidence 1 35788999998888887777766554
No 96
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.11 E-value=2.4e-05 Score=63.72 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=72.3
Q ss_pred CCccceec-CCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCc----EEEecCCccHHHHHHHHH-Hccc
Q 028320 1 MPKQYLPL-LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD----LKFSLPGKERQDSVYSGL-QEVD 74 (210)
Q Consensus 1 ~~K~l~~i-~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~----v~~~~~~~~~~~si~~~l-~~~~ 74 (210)
.||||+++ ++++|++.|++++......++++|||+.+....+++-+...+.. +.+-+-|..+..++..|. ....
T Consensus 23 ~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~illEP~gRnTApAIA~aa~~~~~ 102 (333)
T COG0836 23 YPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAGIILEPEGRNTAPAIALAALSATA 102 (333)
T ss_pred CCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccceEeccCCCCcHHHHHHHHHHHHH
Confidence 59999999 55999999999998855578999999998755566655543322 323333555566664433 3333
Q ss_pred CC-CCEEEEEeCCCCCCCHHHHHHHHHHHH
Q 028320 75 FN-SELVCIHDSARPLVLSKDVQKVLMDAL 103 (210)
Q Consensus 75 ~~-~d~vl~~~~d~Pli~~~~i~~~i~~~~ 103 (210)
.. +..++++.+|+=.-+.+.+.+.+....
T Consensus 103 ~~~d~~~lVlpsDH~I~d~~af~~av~~A~ 132 (333)
T COG0836 103 EGGDALVLVLPSDHVIADEEAFLNAVKKAE 132 (333)
T ss_pred hCCCcEEEEecCcceeccHHHHHHHHHHHH
Confidence 22 347899999999999888888776654
No 97
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=1.5e-05 Score=64.20 Aligned_cols=107 Identities=16% Similarity=0.224 Sum_probs=68.3
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCCh---HHHHHHHhhcCCcEEEecCCc--cHHHHHHHHHHcc-c
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS---DIFEETKEKINVDLKFSLPGK--ERQDSVYSGLQEV-D 74 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~---~~i~~~~~~~~~~v~~~~~~~--~~~~si~~~l~~~-~ 74 (210)
+||+|.|++|.|||.|-|+++.+...+.+|.++.=.++. +++.+..+.+..+++|..... +....+.+--+.+ .
T Consensus 25 vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvrYL~E~~plGtaGgLyhFrdqIl~ 104 (407)
T KOG1460|consen 25 VPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVRYLREDNPLGTAGGLYHFRDQILA 104 (407)
T ss_pred CCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchhhhccCCCCCcccceeehhhHHhc
Confidence 599999999999999999999999999999998877752 233444455677776653211 1122233322222 2
Q ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028320 75 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV 109 (210)
Q Consensus 75 ~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~ 109 (210)
.+.+.|+++.||-= ..--+++|+++...+++..
T Consensus 105 g~ps~vFvlnaDVC--csfPl~~ml~ahr~~g~~~ 137 (407)
T KOG1460|consen 105 GSPSAVFVLNADVC--CSFPLQDMLEAHRRYGGIG 137 (407)
T ss_pred CCCceEEEEeccee--cCCcHHHHHHHHhhcCCce
Confidence 23466666655421 1222577888887777643
No 98
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0044 Score=54.76 Aligned_cols=96 Identities=22% Similarity=0.318 Sum_probs=65.3
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh--c----CCcEEEecCCccHHHHHHHHHHccc
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK--I----NVDLKFSLPGKERQDSVYSGLQEVD 74 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~--~----~~~v~~~~~~~~~~~si~~~l~~~~ 74 (210)
.|+.|+|+.+.|||.|+++.+..++ +.+++|.|+... ..+.+.+++ + ...+..+.++. ..|+-.+|+.+.
T Consensus 45 ~p~~LLPlaNVpmIdYtL~~L~~ag-V~eVfvfc~~~~-~qi~e~i~~sew~~~~~~~v~ti~s~~--~~S~GDamR~id 120 (673)
T KOG1461|consen 45 KPRVLLPLANVPMIDYTLEWLERAG-VEEVFVFCSAHA-AQIIEYIEKSEWYLPMSFIVVTICSGE--SRSVGDAMRDID 120 (673)
T ss_pred CCceEeeecCchHHHHHHHHHHhcC-ceEEEEEecccH-HHHHHHHhhccccccccceEEEEcCCC--cCcHHHHHHHHH
Confidence 4889999999999999999998886 899999998664 345666554 1 11233333333 345667777774
Q ss_pred C----CCCEEEEEeCCCCCCCHHHHHHHHHHHH
Q 028320 75 F----NSELVCIHDSARPLVLSKDVQKVLMDAL 103 (210)
Q Consensus 75 ~----~~d~vl~~~~d~Pli~~~~i~~~i~~~~ 103 (210)
+ ..|++|+- || -++--.+.++++..+
T Consensus 121 ~k~litgDFiLVs-gd--~vsN~pl~~~l~eHr 150 (673)
T KOG1461|consen 121 EKQLITGDFILVS-GD--TVSNMPLRNVLEEHR 150 (673)
T ss_pred hcceeecceEEEe-CC--eeecCchHHHHHHHH
Confidence 3 35776654 42 455566788888774
No 99
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.036 Score=46.83 Aligned_cols=197 Identities=17% Similarity=0.153 Sum_probs=123.2
Q ss_pred CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCC-----cEEEec-----CC----ccH
Q 028320 1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INV-----DLKFSL-----PG----KER 62 (210)
Q Consensus 1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~-----~v~~~~-----~~----~~~ 62 (210)
++|+-.|++|| .||..++..+..|+ +.+|.|.|-.... .+.+.+.. ++. -+.+.+ ++ +..
T Consensus 26 RakpAVpFgGkYRiIDF~LSN~vNSG-i~~I~VltQy~~~-SL~~Hi~~G~~w~l~~~~~~v~ilp~~~~~~~~~wy~Gt 103 (393)
T COG0448 26 RAKPAVPFGGKYRIIDFALSNCVNSG-IRRIGVLTQYKSH-SLNDHIGRGWPWDLDRKNGGVFILPAQQREGGERWYEGT 103 (393)
T ss_pred ccccccccCceeEEEeEEcccccccC-CCeEEEEeccchh-HHHHHhhCCCccccccccCcEEEeCchhccCCCcceecc
Confidence 57999999998 59999999999996 9999999988763 22333321 100 122222 11 123
Q ss_pred HHHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCe--EEeeeccc------ceEEccCCCceeeecCc
Q 028320 63 QDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGAA--VLGVPAKA------TIKEANSESFVVRTLDR 133 (210)
Q Consensus 63 ~~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~--~~~~~~~~------~~~~~~~~g~v~~~~~r 133 (210)
.+++..-+..++. +.++|+++.||+ +-.=+++++++...+.++. +.+.++.. .+..+|++|++..+.+.
T Consensus 104 adai~Qnl~~i~~~~~eyvlIlsgDh--IYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim~~D~~~~i~~F~eK 181 (393)
T COG0448 104 ADAIYQNLLIIRRSDPEYVLILSGDH--IYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRIIEFVEK 181 (393)
T ss_pred HHHHHHhHHHHHhcCCCEEEEecCCE--EEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCceEECCCCCEEeeeec
Confidence 6667766666653 568999999984 6667889999988887763 44555542 23445777887765322
Q ss_pred ------cCeeeecCCcccChHHHHHHHHHHHhc--CCCCCcHHHHH---HhCCCCeEEEecCCCCccccChhhHHHHHHH
Q 028320 134 ------KTLWEMQTPQVIKPDLLKKGFELVNRE--GLEVTDDVSIV---EHLKHPVYITEGSYTNIKVTTPDDLLIAERI 202 (210)
Q Consensus 134 ------~~~~~~~~P~~f~~~~l~~~~~~~~~~--~~~~~d~~~~~---~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~ 202 (210)
+.-..--.-++|+...|..++....++ +..-. ...++ ...|. +..-+....+-||.|-+-|-.|.--
T Consensus 182 p~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~Df-gkdiIp~~~~~~~-v~AY~f~gYw~dVgTi~syy~aNmd 259 (393)
T COG0448 182 PADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDF-GKDIIPKLLERGK-VYAYEFSGYWRDVGTIDSYYEANMD 259 (393)
T ss_pred cCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccc-hHHHHHHHHhcCC-EEEEeccchhhhcccHHHHHHhhHH
Confidence 110111123678999998888765442 22211 12333 22333 5444555689999999988887754
Q ss_pred h
Q 028320 203 L 203 (210)
Q Consensus 203 ~ 203 (210)
|
T Consensus 260 L 260 (393)
T COG0448 260 L 260 (393)
T ss_pred h
Confidence 3
No 100
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=96.88 E-value=0.012 Score=41.80 Aligned_cols=91 Identities=11% Similarity=0.127 Sum_probs=45.3
Q ss_pred HHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe-cCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHH
Q 028320 17 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDV 95 (210)
Q Consensus 17 ~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~-~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i 95 (210)
|++++.+....+..+..+++............. .+.+. .++.+-.+-+.+|++.+....+.|+++-.|.|.++++.|
T Consensus 1 tl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l 78 (122)
T PF09837_consen 1 TLAALAQADGADVVLAYTPDGDHAAFRQLWLPS--GFSFFPQQGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDL 78 (122)
T ss_dssp -------TSSSEEEEEE----TTHHHHHHHH-T--TSEEEE--SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHH
T ss_pred CccccccCCCcCEEEEEcCCccHHHHhccccCC--CCEEeecCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHH
Confidence 456777766555555555554433333222222 23333 345555666777777764346789999999999999999
Q ss_pred HHHHHHHHhcCCeE
Q 028320 96 QKVLMDALRVGAAV 109 (210)
Q Consensus 96 ~~~i~~~~~~~~~~ 109 (210)
+++++.++..+.++
T Consensus 79 ~~A~~~L~~~d~Vl 92 (122)
T PF09837_consen 79 EQAFEALQRHDVVL 92 (122)
T ss_dssp HHHHHHTTT-SEEE
T ss_pred HHHHHHhccCCEEE
Confidence 99999987765443
No 101
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.15 E-value=0.17 Score=39.67 Aligned_cols=92 Identities=13% Similarity=-0.037 Sum_probs=64.4
Q ss_pred cCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCC
Q 028320 8 LLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSAR 87 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~ 87 (210)
-++...|..+++++... .++|+|+-+... +...++++.++..+... ...+...+.-.|++... .++|+++++|.
T Consensus 9 ~Ne~~~l~~~l~sl~~~--~~eiivvD~gSt-D~t~~i~~~~~~~v~~~-~~~g~~~~~n~~~~~a~--~d~vl~lDaD~ 82 (229)
T cd02511 9 KNEERNIERCLESVKWA--VDEIIVVDSGST-DRTVEIAKEYGAKVYQR-WWDGFGAQRNFALELAT--NDWVLSLDADE 82 (229)
T ss_pred CCcHHHHHHHHHHHhcc--cCEEEEEeCCCC-ccHHHHHHHcCCEEEEC-CCCChHHHHHHHHHhCC--CCEEEEEeCCc
Confidence 46667788889888643 378877655433 55677788887665443 22333455556777765 68999999997
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 028320 88 PLVLSKDVQKVLMDALRVG 106 (210)
Q Consensus 88 Pli~~~~i~~~i~~~~~~~ 106 (210)
.++++.++.+.+.+...+
T Consensus 83 -~~~~~~~~~l~~~~~~~~ 100 (229)
T cd02511 83 -RLTPELADEILALLATDD 100 (229)
T ss_pred -CcCHHHHHHHHHHHhCCC
Confidence 569999999998876654
No 102
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=96.02 E-value=0.2 Score=39.06 Aligned_cols=94 Identities=9% Similarity=0.095 Sum_probs=61.5
Q ss_pred hHHHHHHHHhcCCC-CCeEEEEeCCCChH----HHHHHHhhcCCcEEEecCC--cc-HHHHHHHHHHcccCCCCEEEEEe
Q 028320 13 IALYSFYTFSRMVE-VKEIVVVCDPSYSD----IFEETKEKINVDLKFSLPG--KE-RQDSVYSGLQEVDFNSELVCIHD 84 (210)
Q Consensus 13 li~~~i~~~~~~~~-~~~ivVv~~~~~~~----~i~~~~~~~~~~v~~~~~~--~~-~~~si~~~l~~~~~~~d~vl~~~ 84 (210)
+|..+++++..... --+|+||-+..... .+++++++++..+.++... .+ ...++-.|++.+..+.|++++++
T Consensus 13 ~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~~~d~i~~lD 92 (236)
T cd06435 13 MVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAPDAEIIAVID 92 (236)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCCCCCEEEEEc
Confidence 79999999876543 23676665443211 2345555555455444221 12 25567778887754479999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC
Q 028320 85 SARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 85 ~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
+|. .++++.+.+++..+...+.
T Consensus 93 ~D~-~~~~~~l~~l~~~~~~~~~ 114 (236)
T cd06435 93 ADY-QVEPDWLKRLVPIFDDPRV 114 (236)
T ss_pred CCC-CcCHHHHHHHHHHhcCCCe
Confidence 996 7899999999988864343
No 103
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.90 E-value=0.24 Score=34.82 Aligned_cols=92 Identities=18% Similarity=0.133 Sum_probs=58.0
Q ss_pred cCCeehHHHHHHHHhcCCC-CCeEEEEeCCCChHHHHHHHhhcC-----CcEEEecCCccHHHHHHHHHHcccCCCCEEE
Q 028320 8 LLGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKIN-----VDLKFSLPGKERQDSVYSGLQEVDFNSELVC 81 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~-~~~ivVv~~~~~~~~i~~~~~~~~-----~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl 81 (210)
.+..+++.++++++.+... ..+++|+.+... +...+...... .......+..+...++..+++... .++++
T Consensus 6 ~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~d~v~ 82 (156)
T cd00761 6 YNEEPYLERCLESLLAQTYPNFEVIVVDDGST-DGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAAR--GEYIL 82 (156)
T ss_pred cCcHHHHHHHHHHHHhCCccceEEEEEeCCCC-ccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhc--CCEEE
Confidence 4556999999999988752 467888777664 23334343332 111122233344666777877764 79999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH
Q 028320 82 IHDSARPLVLSKDVQKVLMDAL 103 (210)
Q Consensus 82 ~~~~d~Pli~~~~i~~~i~~~~ 103 (210)
++++|..+ .++.+..++..+.
T Consensus 83 ~~d~D~~~-~~~~~~~~~~~~~ 103 (156)
T cd00761 83 FLDADDLL-LPDWLERLVAELL 103 (156)
T ss_pred EECCCCcc-CccHHHHHHHHHh
Confidence 99999986 5666666644443
No 104
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=95.74 E-value=0.45 Score=35.96 Aligned_cols=89 Identities=18% Similarity=0.177 Sum_probs=57.8
Q ss_pred hHHHHHHHHhcCCCC-CeEEEEeCCCChHHHHHHHh----hcCCcEEEec--CCccHHHHHHHHHHcccCCCCEEEEEeC
Q 028320 13 IALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKE----KINVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDS 85 (210)
Q Consensus 13 li~~~i~~~~~~~~~-~~ivVv~~~~~~~~i~~~~~----~~~~~v~~~~--~~~~~~~si~~~l~~~~~~~d~vl~~~~ 85 (210)
.|..+++++.+.... .+|+||-+....+.+.++++ +++ +.++. ...+...+.-.|++... .++++++++
T Consensus 14 ~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a~--gd~i~~lD~ 89 (201)
T cd04195 14 FLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHCT--YDWVARMDT 89 (201)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhcC--CCEEEEeCC
Confidence 788999998765422 56666655432233344333 333 33332 22344666677887754 799999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 028320 86 ARPLVLSKDVQKVLMDALRVG 106 (210)
Q Consensus 86 d~Pli~~~~i~~~i~~~~~~~ 106 (210)
|. ...++.++.+++.+....
T Consensus 90 Dd-~~~~~~l~~~~~~~~~~~ 109 (201)
T cd04195 90 DD-ISLPDRFEKQLDFIEKNP 109 (201)
T ss_pred cc-ccCcHHHHHHHHHHHhCC
Confidence 98 678999999999886543
No 105
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=95.70 E-value=0.23 Score=39.09 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=61.3
Q ss_pred CCeehHHHHHHHHhcCCCCC---eEEEEeCCCChHHHHHHHhhcCC-cEEEec--CCccHHHHHHHHHHcccCCCCEEEE
Q 028320 9 LGQPIALYSFYTFSRMVEVK---EIVVVCDPSYSDIFEETKEKINV-DLKFSL--PGKERQDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~---~ivVv~~~~~~~~i~~~~~~~~~-~v~~~~--~~~~~~~si~~~l~~~~~~~d~vl~ 82 (210)
+....|..+++.+.+..... +|+|+.+... +...++++++.. .+.++. ...+...+...|++... .|++++
T Consensus 39 n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~v~~i~~~~~~g~~~a~n~gi~~a~--~d~i~~ 115 (251)
T cd06439 39 NEEAVIEAKLENLLALDYPRDRLEIIVVSDGST-DGTAEIAREYADKGVKLLRFPERRGKAAALNRALALAT--GEIVVF 115 (251)
T ss_pred CcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCC-ccHHHHHHHHhhCcEEEEEcCCCCChHHHHHHHHHHcC--CCEEEE
Confidence 45557788888876543322 5777655543 445566665542 133332 22344666777888765 699999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcC
Q 028320 83 HDSARPLVLSKDVQKVLMDALRVG 106 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~~i~~~~~~~ 106 (210)
+++|.-+ +++.++++++.+...+
T Consensus 116 lD~D~~~-~~~~l~~l~~~~~~~~ 138 (251)
T cd06439 116 TDANALL-DPDALRLLVRHFADPS 138 (251)
T ss_pred EccccCc-CHHHHHHHHHHhcCCC
Confidence 9999987 5999999999886443
No 106
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=95.46 E-value=0.69 Score=34.61 Aligned_cols=96 Identities=8% Similarity=0.017 Sum_probs=63.6
Q ss_pred cCCeehHHHHHHHHhcCCC---CCeEEEEeCCCChHHHHHHHhhcCCcEEEec--CCccHHHHHHHHHHccc---CCCCE
Q 028320 8 LLGQPIALYSFYTFSRMVE---VKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVD---FNSEL 79 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~---~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~--~~~~~~~si~~~l~~~~---~~~d~ 79 (210)
.+....|..+++++.+... .-+|+|+.+... +...+++++++..+.... ...+...++..|+..+. .+.|+
T Consensus 6 ~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~-D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~ 84 (183)
T cd06438 6 HNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCT-DDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLADDPDA 84 (183)
T ss_pred cchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCC-chHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCE
Confidence 3455678888888866432 135666655543 556677777765543322 22234667777887653 34789
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRV 105 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~ 105 (210)
++++++|.=+ .++.+..++..+...
T Consensus 85 v~~~DaD~~~-~p~~l~~l~~~~~~~ 109 (183)
T cd06438 85 VVVFDADNLV-DPNALEELNARFAAG 109 (183)
T ss_pred EEEEcCCCCC-ChhHHHHHHHHHhhC
Confidence 9999999865 699999999888653
No 107
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=95.06 E-value=0.5 Score=39.05 Aligned_cols=94 Identities=15% Similarity=0.107 Sum_probs=62.8
Q ss_pred cCCeehHHHHHHHHhcC---CCCCeEEEEeCCCChHHHHHHHhhcCCcEEE-------ecCCccHHHHHHHHHHcccCCC
Q 028320 8 LLGQPIALYSFYTFSRM---VEVKEIVVVCDPSYSDIFEETKEKINVDLKF-------SLPGKERQDSVYSGLQEVDFNS 77 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~---~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~-------~~~~~~~~~si~~~l~~~~~~~ 77 (210)
.|....|..+++.+.+. ....+|+||-+.. .+...+.++.++..+.. .....+...++..|+.... .
T Consensus 40 yNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgS-tD~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~~~g~~~a~--g 116 (306)
T PRK13915 40 LNEEETVGKVVDSIRPLLMEPLVDELIVIDSGS-TDATAERAAAAGARVVSREEILPELPPRPGKGEALWRSLAATT--G 116 (306)
T ss_pred CCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCC-ccHHHHHHHHhcchhhcchhhhhccccCCCHHHHHHHHHHhcC--C
Confidence 36667788888887642 2246777765433 35566677766643211 1112234667778887754 7
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320 78 ELVCIHDSARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 78 d~vl~~~~d~Pli~~~~i~~~i~~~~~ 104 (210)
|+|+++++|.-..+++.+.++++.+..
T Consensus 117 d~vv~lDaD~~~~~p~~l~~l~~~l~~ 143 (306)
T PRK13915 117 DIVVFVDADLINFDPMFVPGLLGPLLT 143 (306)
T ss_pred CEEEEEeCccccCCHHHHHHHHHHHHh
Confidence 999999999987899999999988753
No 108
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=95.05 E-value=0.81 Score=35.33 Aligned_cols=95 Identities=12% Similarity=0.115 Sum_probs=62.3
Q ss_pred eecCCe--ehHHHHHHHHhcCCCCC---eEEEEeCCCChHHHHHHHhhcCC----cEEEecCCc-cHHHHHHHHHHcccC
Q 028320 6 LPLLGQ--PIALYSFYTFSRMVEVK---EIVVVCDPSYSDIFEETKEKINV----DLKFSLPGK-ERQDSVYSGLQEVDF 75 (210)
Q Consensus 6 ~~i~gk--pli~~~i~~~~~~~~~~---~ivVv~~~~~~~~i~~~~~~~~~----~v~~~~~~~-~~~~si~~~l~~~~~ 75 (210)
.|.-+. .++..+++++.+...-+ +|+||-+... +...++++.++. .+....... .....+..|++...
T Consensus 7 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~a~- 84 (234)
T cd06421 7 IPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRR-PELRALAAELGVEYGYRYLTRPDNRHAKAGNLNNALAHTT- 84 (234)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCc-hhHHHHHHHhhcccCceEEEeCCCCCCcHHHHHHHHHhCC-
Confidence 344443 37889999988765444 6777655543 556667766653 222222111 12445677887764
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~ 104 (210)
.|+++++++|.=+ +++.+.++++.+..
T Consensus 85 -~d~i~~lD~D~~~-~~~~l~~l~~~~~~ 111 (234)
T cd06421 85 -GDFVAILDADHVP-TPDFLRRTLGYFLD 111 (234)
T ss_pred -CCEEEEEccccCc-CccHHHHHHHHHhc
Confidence 7999999999644 88999999998876
No 109
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=95.00 E-value=0.32 Score=36.13 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=57.4
Q ss_pred eehHHHHHHHHhcCC---CCCeEEEEeCCCChHHHHHHHhhcCC---cEEEe--cCCccHHHHHHHHHHcccCCCCEEEE
Q 028320 11 QPIALYSFYTFSRMV---EVKEIVVVCDPSYSDIFEETKEKINV---DLKFS--LPGKERQDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 11 kpli~~~i~~~~~~~---~~~~ivVv~~~~~~~~i~~~~~~~~~---~v~~~--~~~~~~~~si~~~l~~~~~~~d~vl~ 82 (210)
...|..+++.+.+.. ...+|+|+-+... +...+.++.+.. .+.++ ....+...+...|++... .|++++
T Consensus 9 ~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~-d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~--gd~i~~ 85 (185)
T cd04179 9 EENIPELVERLLAVLEEGYDYEIIVVDDGST-DGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAAR--GDIVVT 85 (185)
T ss_pred HhhHHHHHHHHHHHhccCCCEEEEEEcCCCC-CChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHhc--CCEEEE
Confidence 345667777776653 2467777654432 233444444322 22222 222233566777887765 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 83 HDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
+++|.- ++++.++++++.....+.
T Consensus 86 lD~D~~-~~~~~l~~l~~~~~~~~~ 109 (185)
T cd04179 86 MDADLQ-HPPEDIPKLLEKLLEGGA 109 (185)
T ss_pred EeCCCC-CCHHHHHHHHHHHhccCC
Confidence 999985 489999999997655544
No 110
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=94.91 E-value=0.51 Score=36.61 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=58.9
Q ss_pred cCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHH---hhcCCcEEEe-cCCccHHHHHHHHHHcccCCCCEEEE
Q 028320 8 LLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK---EKINVDLKFS-LPGKERQDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 8 i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~---~~~~~~v~~~-~~~~~~~~si~~~l~~~~~~~d~vl~ 82 (210)
.++. +.|..+++.+.+.. ..+|+||.+... +...+.+ ..+. .+.+. ....+...++..|++... .|+|++
T Consensus 9 ~ne~~~~l~~~l~sl~~q~-~~eiivvdd~s~-d~~~~~l~~~~~~~-~~~v~~~~~~g~~~a~n~g~~~a~--~d~v~~ 83 (235)
T cd06434 9 YDEDPDVFRECLRSILRQK-PLEIIVVTDGDD-EPYLSILSQTVKYG-GIFVITVPHPGKRRALAEGIRHVT--TDIVVL 83 (235)
T ss_pred cCCChHHHHHHHHHHHhCC-CCEEEEEeCCCC-hHHHHHHHhhccCC-cEEEEecCCCChHHHHHHHHHHhC--CCEEEE
Confidence 3555 78999999987754 457777666554 3334432 2222 22222 222334566777887764 799999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh
Q 028320 83 HDSARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~~i~~~~~ 104 (210)
+++|. .++++.++.+++.+..
T Consensus 84 lD~D~-~~~~~~l~~l~~~~~~ 104 (235)
T cd06434 84 LDSDT-VWPPNALPEMLKPFED 104 (235)
T ss_pred ECCCc-eeChhHHHHHHHhccC
Confidence 99998 4567789999998873
No 111
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=94.81 E-value=0.73 Score=33.10 Aligned_cols=94 Identities=13% Similarity=0.168 Sum_probs=57.5
Q ss_pred CCeehHHHHHHHHhcCCC-CCeEEEEeCCCChHHHHHHHhhcCC----cEEEe--cCCccHHHHHHHHHHcccCCCCEEE
Q 028320 9 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINV----DLKFS--LPGKERQDSVYSGLQEVDFNSELVC 81 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~-~~~ivVv~~~~~~~~i~~~~~~~~~----~v~~~--~~~~~~~~si~~~l~~~~~~~d~vl 81 (210)
+....|..+++.+.+... -.+|+|+-+... +...+.+..+.. .+.+. ....+...+...|++... .++++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~--~~~i~ 83 (180)
T cd06423 7 NEEAVIERTIESLLALDYPKLEVIVVDDGST-DDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAK--GDIVV 83 (180)
T ss_pred ChHHHHHHHHHHHHhCCCCceEEEEEeCCCc-cchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcC--CCEEE
Confidence 445678888888876532 246666654443 333444444321 12222 222233566777888764 79999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320 82 IHDSARPLVLSKDVQKVLMDALRVG 106 (210)
Q Consensus 82 ~~~~d~Pli~~~~i~~~i~~~~~~~ 106 (210)
++++|. .+.++.+..++..+....
T Consensus 84 ~~D~D~-~~~~~~l~~~~~~~~~~~ 107 (180)
T cd06423 84 VLDADT-ILEPDALKRLVVPFFADP 107 (180)
T ss_pred EECCCC-CcChHHHHHHHHHhccCC
Confidence 999998 558999999966665443
No 112
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.78 E-value=0.63 Score=33.54 Aligned_cols=95 Identities=13% Similarity=0.025 Sum_probs=62.2
Q ss_pred cCCeehHHHHHHHHhcCCC-CCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCCEEEEEe
Q 028320 8 LLGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCIHD 84 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~-~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d~vl~~~ 84 (210)
.+...++..+++++.+... ..+|+|+-+... +...+.+.++...+.++.. ..+...+...|++.+. .+++++++
T Consensus 6 ~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~-~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~~~--~~~i~~~D 82 (166)
T cd04186 6 YNSLEYLKACLDSLLAQTYPDFEVIVVDNAST-DGSVELLRELFPEVRLIRNGENLGFGAGNNQGIREAK--GDYVLLLN 82 (166)
T ss_pred cCCHHHHHHHHHHHHhccCCCeEEEEEECCCC-chHHHHHHHhCCCeEEEecCCCcChHHHhhHHHhhCC--CCEEEEEC
Confidence 4566889999999876532 346777665543 3344555444323443322 2234566677888774 79999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC
Q 028320 85 SARPLVLSKDVQKVLMDALRVG 106 (210)
Q Consensus 85 ~d~Pli~~~~i~~~i~~~~~~~ 106 (210)
+|.= ++++.+..+++.+....
T Consensus 83 ~D~~-~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 83 PDTV-VEPGALLELLDAAEQDP 103 (166)
T ss_pred CCcE-ECccHHHHHHHHHHhCC
Confidence 9985 57899999998776553
No 113
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=94.72 E-value=1.1 Score=33.70 Aligned_cols=94 Identities=12% Similarity=0.035 Sum_probs=57.7
Q ss_pred cCCe-ehHHHHHHHHhcCCCC-CeEEEEeCCCChHHHHHHHhhc---CCcEEEe--cCCccHHHHHHHHHHcccCCCCEE
Q 028320 8 LLGQ-PIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKI---NVDLKFS--LPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 8 i~gk-pli~~~i~~~~~~~~~-~~ivVv~~~~~~~~i~~~~~~~---~~~v~~~--~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
.++. ..+..+++++.+.... -+|+|+-+......+.+..+.+ ...+.++ ....+...+.-.|++... .|++
T Consensus 10 ~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~--~d~i 87 (202)
T cd04184 10 YNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALELAT--GEFV 87 (202)
T ss_pred ccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHhhc--CCEE
Confidence 4566 7788888888754322 2666664433212233333322 1223333 222334566677887764 7999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~ 104 (210)
+++++|. .++++.++.+++.+..
T Consensus 88 ~~ld~D~-~~~~~~l~~~~~~~~~ 110 (202)
T cd04184 88 ALLDHDD-ELAPHALYEVVKALNE 110 (202)
T ss_pred EEECCCC-cCChHHHHHHHHHHHh
Confidence 9999999 6699999999998843
No 114
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.66 E-value=0.94 Score=34.74 Aligned_cols=95 Identities=15% Similarity=0.071 Sum_probs=57.4
Q ss_pred CCeehHHHHHHHHhcCCCCC---eEEEEeCCCChHHHHHHHh---hc-CCcEEEecC----CccHHHHHHHHHHcccCCC
Q 028320 9 LGQPIALYSFYTFSRMVEVK---EIVVVCDPSYSDIFEETKE---KI-NVDLKFSLP----GKERQDSVYSGLQEVDFNS 77 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~---~ivVv~~~~~~~~i~~~~~---~~-~~~v~~~~~----~~~~~~si~~~l~~~~~~~ 77 (210)
+....|..+++++.+...-. +|+||-+... +...+.++ .. +..+..+.. ......++..|++... .
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~~--~ 83 (229)
T cd04192 7 NEAENLPRLLQSLSALDYPKEKFEVILVDDHST-DGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAAK--G 83 (229)
T ss_pred CcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCC-cChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHhc--C
Confidence 45567888999876543322 5666544322 22333332 11 233433322 2233455666776654 7
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 78 ELVCIHDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
|+++++++|. .+.++.++++++.+...+.
T Consensus 84 d~i~~~D~D~-~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 84 DWIVTTDADC-VVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred CEEEEECCCc-ccCHHHHHHHHHHhhcCCC
Confidence 9999999999 7789999999987765543
No 115
>PRK11204 N-glycosyltransferase; Provisional
Probab=94.63 E-value=0.74 Score=39.49 Aligned_cols=94 Identities=14% Similarity=0.095 Sum_probs=61.4
Q ss_pred cCCeehHHHHHHHHhcCCCC-CeEEEEeCCCChHHHHHH----HhhcCCcEEEec--CCccHHHHHHHHHHcccCCCCEE
Q 028320 8 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEET----KEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~~~~i~~~----~~~~~~~v~~~~--~~~~~~~si~~~l~~~~~~~d~v 80 (210)
.|+...|..+++++.+.... -+|+|+.+... +...+. .++++ .+.++. ...+...++..|++... .|++
T Consensus 63 yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~-d~t~~~l~~~~~~~~-~v~~i~~~~n~Gka~aln~g~~~a~--~d~i 138 (420)
T PRK11204 63 YNEGENVEETISHLLALRYPNYEVIAINDGSS-DNTGEILDRLAAQIP-RLRVIHLAENQGKANALNTGAAAAR--SEYL 138 (420)
T ss_pred CCCHHHHHHHHHHHHhCCCCCeEEEEEECCCC-ccHHHHHHHHHHhCC-cEEEEEcCCCCCHHHHHHHHHHHcC--CCEE
Confidence 35667889999998765433 36666655432 223333 33332 344443 22334677778888754 7999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVG 106 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~ 106 (210)
+++|+|. .++++.++++++.+++..
T Consensus 139 ~~lDaD~-~~~~d~L~~l~~~~~~~~ 163 (420)
T PRK11204 139 VCIDGDA-LLDPDAAAYMVEHFLHNP 163 (420)
T ss_pred EEECCCC-CCChhHHHHHHHHHHhCC
Confidence 9999998 569999999999886543
No 116
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=94.61 E-value=0.32 Score=34.99 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=62.3
Q ss_pred cCCeehHHHHHHHHhcC-CCCCeEEEEeCCCChHHHHHHHhhc---CCcEEEecC--CccHHHHHHHHHHcccCCCCEEE
Q 028320 8 LLGQPIALYSFYTFSRM-VEVKEIVVVCDPSYSDIFEETKEKI---NVDLKFSLP--GKERQDSVYSGLQEVDFNSELVC 81 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~-~~~~~ivVv~~~~~~~~i~~~~~~~---~~~v~~~~~--~~~~~~si~~~l~~~~~~~d~vl 81 (210)
.++...|..+++++.+. ....+|+|+-+... +...+.++++ +..+.++.. ..+...+...|++.+. .++++
T Consensus 7 ~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~-d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~--~~~i~ 83 (169)
T PF00535_consen 7 YNEAEYLERTLESLLKQTDPDFEIIVVDDGST-DETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAK--GEYIL 83 (169)
T ss_dssp SS-TTTHHHHHHHHHHHSGCEEEEEEEECS-S-SSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH----SSEEE
T ss_pred eCCHHHHHHHHHHHhhccCCCEEEEEeccccc-cccccccccccccccccccccccccccccccccccccccc--eeEEE
Confidence 34457788899987765 23467777766652 3345555554 345555433 2344667777888876 67999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCCe
Q 028320 82 IHDSARPLVLSKDVQKVLMDALRVGAA 108 (210)
Q Consensus 82 ~~~~d~Pli~~~~i~~~i~~~~~~~~~ 108 (210)
++++|.=+ ++..++.+++.+...+..
T Consensus 84 ~ld~D~~~-~~~~l~~l~~~~~~~~~~ 109 (169)
T PF00535_consen 84 FLDDDDII-SPDWLEELVEALEKNPPD 109 (169)
T ss_dssp EEETTEEE--TTHHHHHHHHHHHCTTE
T ss_pred EeCCCceE-cHHHHHHHHHHHHhCCCc
Confidence 99999644 455999999999886653
No 117
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=94.61 E-value=0.032 Score=45.20 Aligned_cols=94 Identities=15% Similarity=-0.011 Sum_probs=57.6
Q ss_pred CCccceecC---CeehHHHHHHHHhcCC-------CCCeEEEEeCCCChHHHHHHHhhcCC---cEE-E--------ecC
Q 028320 1 MPKQYLPLL---GQPIALYSFYTFSRMV-------EVKEIVVVCDPSYSDIFEETKEKINV---DLK-F--------SLP 58 (210)
Q Consensus 1 ~~K~l~~i~---gkpli~~~i~~~~~~~-------~~~~ivVv~~~~~~~~i~~~~~~~~~---~v~-~--------~~~ 58 (210)
.||++++++ |+|+|+|.+++++... .+ ..++.+.+...+.+.+..++++. .+. + ..+
T Consensus 18 ~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~I-p~~imts~~t~~~t~~~l~~~~~~~~~v~~f~Q~~~P~~~~~ 96 (266)
T cd04180 18 GPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKI-PEQLMNSKYTHEKTQCYFEKINQKNSYVITFMQGKLPLKNDD 96 (266)
T ss_pred CCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCC-CEEEEcCchhHHHHHHHHHHcCCCCCceEEEEeCCceEEeCC
Confidence 499999999 9999999999997631 23 34555555544667787777541 111 1 001
Q ss_pred C-------------ccHHHHHHHHHHc------cc-CCCCEEEEEeCCCCCCCHHHH
Q 028320 59 G-------------KERQDSVYSGLQE------VD-FNSELVCIHDSARPLVLSKDV 95 (210)
Q Consensus 59 ~-------------~~~~~si~~~l~~------~~-~~~d~vl~~~~d~Pli~~~~i 95 (210)
+ ......+..+|.. +. ....++.+.+.|.++....+-
T Consensus 97 ~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP 153 (266)
T cd04180 97 DARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADP 153 (266)
T ss_pred CCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCH
Confidence 0 0013345444432 22 236889999999999876433
No 118
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=94.12 E-value=1.6 Score=41.12 Aligned_cols=97 Identities=13% Similarity=0.169 Sum_probs=64.5
Q ss_pred ceecCCee--hHHHHHHHHhcCCCC-C--eEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccCCCC
Q 028320 5 YLPLLGQP--IALYSFYTFSRMVEV-K--EIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 5 l~~i~gkp--li~~~i~~~~~~~~~-~--~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~~~d 78 (210)
+.|.-+.+ ++..++.++.+...- + +|+|+-|.. .+.+.++++++++.+....+ .......+-+|++..+ .|
T Consensus 265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS-~D~t~~la~~~~v~yI~R~~n~~gKAGnLN~aL~~a~--GE 341 (852)
T PRK11498 265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGG-REEFRQFAQEVGVKYIARPTHEHAKAGNINNALKYAK--GE 341 (852)
T ss_pred EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCC-ChHHHHHHHHCCcEEEEeCCCCcchHHHHHHHHHhCC--CC
Confidence 34555555 577888887765443 2 466654443 36788888887754322222 1123566778888764 79
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRV 105 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~ 105 (210)
+++++|+|.= .+++.+++++..+...
T Consensus 342 yIavlDAD~i-p~pdfL~~~V~~f~~d 367 (852)
T PRK11498 342 FVAIFDCDHV-PTRSFLQMTMGWFLKD 367 (852)
T ss_pred EEEEECCCCC-CChHHHHHHHHHHHhC
Confidence 9999999995 6899999998876544
No 119
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=93.98 E-value=1.9 Score=31.99 Aligned_cols=91 Identities=15% Similarity=0.056 Sum_probs=52.5
Q ss_pred CeehHHHHHHHHhcC----CCCCeEEEEeCCCChHHHHHHHhhcC---CcEEEe--cCCccHHHHHHHHHHcccCCCCEE
Q 028320 10 GQPIALYSFYTFSRM----VEVKEIVVVCDPSYSDIFEETKEKIN---VDLKFS--LPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 10 gkpli~~~i~~~~~~----~~~~~ivVv~~~~~~~~i~~~~~~~~---~~v~~~--~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
+.-.|..+++++... ...-+|+|+-+... +...+.++.+. ..+.++ ....+...++..|++... .|++
T Consensus 8 ~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~~a~--~d~i 84 (181)
T cd04187 8 EEENLPELYERLKAVLESLGYDYEIIFVDDGST-DRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDHAR--GDAV 84 (181)
T ss_pred chhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCC-ccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHHhcC--CCEE
Confidence 333455555554321 11236666654433 22333333321 123333 222334667778888765 6899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~ 104 (210)
+++++|..+ +++.++.+++.+..
T Consensus 85 ~~~D~D~~~-~~~~l~~l~~~~~~ 107 (181)
T cd04187 85 ITMDADLQD-PPELIPEMLAKWEE 107 (181)
T ss_pred EEEeCCCCC-CHHHHHHHHHHHhC
Confidence 999999985 89999999988543
No 120
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=93.90 E-value=1.5 Score=33.68 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=57.3
Q ss_pred cCCeehHHHHHHHHhcCCC--CCeEEEEeCCCChHHHHHHHh----hcCCcEEEe--cCCccHHHHHHHHHHcccCCCCE
Q 028320 8 LLGQPIALYSFYTFSRMVE--VKEIVVVCDPSYSDIFEETKE----KINVDLKFS--LPGKERQDSVYSGLQEVDFNSEL 79 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~--~~~ivVv~~~~~~~~i~~~~~----~~~~~v~~~--~~~~~~~~si~~~l~~~~~~~d~ 79 (210)
.++...|..+++++.+... --+|+||-+... +...+.++ +++ .+.+. ....+...+...|++... .|+
T Consensus 6 yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~-d~t~~~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~~a~--gd~ 81 (224)
T cd06442 6 YNERENIPELIERLDAALKGIDYEIIVVDDNSP-DGTAEIVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFKAAR--GDV 81 (224)
T ss_pred cchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC-CChHHHHHHHHHhCC-ceEEEecCCCCChHHHHHHHHHHcC--CCE
Confidence 3455678888888876432 246666644322 22233333 322 22322 222233566778888875 689
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVG 106 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~ 106 (210)
++++++|.- .+++.++.+++.+...+
T Consensus 82 i~~lD~D~~-~~~~~l~~l~~~~~~~~ 107 (224)
T cd06442 82 IVVMDADLS-HPPEYIPELLEAQLEGG 107 (224)
T ss_pred EEEEECCCC-CCHHHHHHHHHHHhcCC
Confidence 999999976 48999999999864433
No 121
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=93.65 E-value=1.5 Score=34.07 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=59.9
Q ss_pred CCeehHHHHHHHHhcCCC---CCeEEEEeCCCChHHHHHHHhhcC---CcEEEecC-CccHHHHHHHHHHcccCCCCEEE
Q 028320 9 LGQPIALYSFYTFSRMVE---VKEIVVVCDPSYSDIFEETKEKIN---VDLKFSLP-GKERQDSVYSGLQEVDFNSELVC 81 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~---~~~ivVv~~~~~~~~i~~~~~~~~---~~v~~~~~-~~~~~~si~~~l~~~~~~~d~vl 81 (210)
+..+.|..+++.+.+... --+|+|+-+... +...+.++.+. ..+.++.. +.+...+.-.|++... .|+++
T Consensus 10 n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~-d~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~N~g~~~a~--~d~v~ 86 (249)
T cd02525 10 NEEKYIEELLESLLNQSYPKDLIEIIVVDGGST-DGTREIVQEYAAKDPRIRLIDNPKRIQSAGLNIGIRNSR--GDIII 86 (249)
T ss_pred CchhhHHHHHHHHHhccCCCCccEEEEEeCCCC-ccHHHHHHHHHhcCCeEEEEeCCCCCchHHHHHHHHHhC--CCEEE
Confidence 455678888888876532 135666644433 33444444432 22444432 2223556667877764 79999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 82 IHDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 82 ~~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
++++|. .++++.++++++.+...+.
T Consensus 87 ~lD~D~-~~~~~~l~~~~~~~~~~~~ 111 (249)
T cd02525 87 RVDAHA-VYPKDYILELVEALKRTGA 111 (249)
T ss_pred EECCCc-cCCHHHHHHHHHHHhcCCC
Confidence 999998 6799999999987765544
No 122
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.62 E-value=2.4 Score=32.12 Aligned_cols=161 Identities=15% Similarity=0.121 Sum_probs=89.1
Q ss_pred ehHHHHHHHHhcCCCCCeEEEEeCC-C---ChHHHHHHHhhcCCcEEEecCCccHHHHHHHHH-HcccCCCCEEEEEeCC
Q 028320 12 PIALYSFYTFSRMVEVKEIVVVCDP-S---YSDIFEETKEKINVDLKFSLPGKERQDSVYSGL-QEVDFNSELVCIHDSA 86 (210)
Q Consensus 12 pli~~~i~~~~~~~~~~~ivVv~~~-~---~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l-~~~~~~~d~vl~~~~d 86 (210)
-|++|++++..+.....+.+.-+++ + +...++.++ |....+.+.|+...+-+.... ..+. .+..|+++--|
T Consensus 38 ~lle~tl~~v~~~~~~~~a~l~~~d~d~~~dlq~m~~~L---g~~lvyqpqGdd~gdRlars~~~a~~-~~~~VliIg~D 113 (211)
T COG3222 38 QLLEDTLDAVAAAPVTARAVLLIGDLDSGGDLQEMRRWL---GSFLVYQPQGDDLGDRLARSHVDAFD-GSYPVLIIGMD 113 (211)
T ss_pred HHHHHHHHHHHhhhhhhcceeeeecccccccHHHHHHHh---hhheeecccCCCHHHHHHHHHHHHhc-CCCcEEEEecC
Confidence 4789999998877655555544443 1 123344443 434556665554444444332 2222 23678888899
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhcCC--CC
Q 028320 87 RPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREGL--EV 164 (210)
Q Consensus 87 ~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~~~--~~ 164 (210)
.|-++.+.+..++.++....++.- |.. ++|+..--+.| ..|++|+. ...|. .+
T Consensus 114 cP~lt~elLa~a~taL~~~paVLG--pa~-------dGGy~llgLrr------~~pe~fe~----------ipwg~~~v~ 168 (211)
T COG3222 114 CPGLTAELLADAFTALLQIPAVLG--PAF-------DGGYYLLGLRR------FAPELFEA----------IPWGTPDVL 168 (211)
T ss_pred CCccCHHHHHHHHHHHhcCcceec--ccc-------cCcEEEEEeec------cCHHHHhc----------CCCCCchHH
Confidence 999999999999988866654432 222 24432110111 02333321 00110 00
Q ss_pred CcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhh
Q 028320 165 TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 204 (210)
Q Consensus 165 ~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~ 204 (210)
.-..+.++++|..++.++ ...|||-|+|+.++.....
T Consensus 169 ~lTl~~lrqng~~~~llp---~L~DvDrpdDLp~l~~~~~ 205 (211)
T COG3222 169 ELTLKALRQNGIDVYLLP---RLGDVDRPDDLPLLRDCCA 205 (211)
T ss_pred HHHHHHHHHcCCcccccC---ccccCCCcchhHHHHHhcc
Confidence 001334556676665453 5789999999998877654
No 123
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=93.59 E-value=2 Score=34.88 Aligned_cols=69 Identities=14% Similarity=0.066 Sum_probs=41.9
Q ss_pred HHHHHhhcCCc-EEEecCCc---cHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHH---HHHhcCCeEEeee
Q 028320 42 FEETKEKINVD-LKFSLPGK---ERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM---DALRVGAAVLGVP 113 (210)
Q Consensus 42 i~~~~~~~~~~-v~~~~~~~---~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~---~~~~~~~~~~~~~ 113 (210)
+.+.+++.+.. ........ +++.+.-.|++... +|+++++|+|. +++++.++++++ .+.....++.+.|
T Consensus 52 l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A~--~d~l~flD~D~-i~~~~~i~~~~~~~~~l~~~~~~~~~~p 127 (281)
T PF10111_consen 52 LKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYAR--GDYLIFLDADC-IPSPDFIEKLLNHVKKLDKNPNAFLVYP 127 (281)
T ss_pred HHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHcC--CCEEEEEcCCe-eeCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 45556655543 21222212 34444555666654 79999999998 568999999999 4544443444444
No 124
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=93.56 E-value=2.4 Score=35.29 Aligned_cols=92 Identities=13% Similarity=0.105 Sum_probs=55.9
Q ss_pred CCeehHHHHHHHHh----cCCCCCeEEEEeCCCChHHHHHH----HhhcCCcEEEe--cCCccHHHHHHHHHHcccCCCC
Q 028320 9 LGQPIALYSFYTFS----RMVEVKEIVVVCDPSYSDIFEET----KEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 9 ~gkpli~~~i~~~~----~~~~~~~ivVv~~~~~~~~i~~~----~~~~~~~v~~~--~~~~~~~~si~~~l~~~~~~~d 78 (210)
|+..-|..+++++. +...--+|+||-+... +...+. .++.+..+..+ ....+...++..|++... .|
T Consensus 16 NE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~-D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A~--gd 92 (325)
T PRK10714 16 NEQESLPELIRRTTAACESLGKEYEILLIDDGSS-DNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHVT--GD 92 (325)
T ss_pred CchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCC-CcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhCC--CC
Confidence 44445555555543 3322236666544322 223333 33334444332 333345678889998865 79
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~ 104 (210)
+++++|+|.- .+++.+.++++.+.+
T Consensus 93 ~vv~~DaD~q-~~p~~i~~l~~~~~~ 117 (325)
T PRK10714 93 LIITLDADLQ-NPPEEIPRLVAKADE 117 (325)
T ss_pred EEEEECCCCC-CCHHHHHHHHHHHHh
Confidence 9999999998 599999999998864
No 125
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.54 E-value=1.8 Score=32.63 Aligned_cols=95 Identities=12% Similarity=0.086 Sum_probs=59.2
Q ss_pred cCCeehHHHHHHHHhcCCC-CCeEEEEeCCCChHHHHHHHhhcCCc--EEEecC--CccHHHHHHHHHHccc-CCCCEEE
Q 028320 8 LLGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINVD--LKFSLP--GKERQDSVYSGLQEVD-FNSELVC 81 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~-~~~ivVv~~~~~~~~i~~~~~~~~~~--v~~~~~--~~~~~~si~~~l~~~~-~~~d~vl 81 (210)
.++...|..+++++.+... -.+|+|+-+... +...++++++... +.+... ..+...++..|++... .+.|+++
T Consensus 6 ~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~-d~t~~~~~~~~~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~ 84 (202)
T cd04185 6 YNRLDLLKECLDALLAQTRPPDHIIVIDNAST-DGTAEWLTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAYELGYDWIW 84 (202)
T ss_pred eCCHHHHHHHHHHHHhccCCCceEEEEECCCC-cchHHHHHHhcCCCceEEEECccccchhhHHHHHHHHHhccCCCEEE
Confidence 4666788999999876532 246666644332 4455666655432 233321 2222444555555442 2478999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh
Q 028320 82 IHDSARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 82 ~~~~d~Pli~~~~i~~~i~~~~~ 104 (210)
++++|. .+.++.++.+++.+..
T Consensus 85 ~ld~D~-~~~~~~l~~l~~~~~~ 106 (202)
T cd04185 85 LMDDDA-IPDPDALEKLLAYADK 106 (202)
T ss_pred EeCCCC-CcChHHHHHHHHHHhc
Confidence 999998 6689999999988873
No 126
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.50 E-value=2.3 Score=32.45 Aligned_cols=93 Identities=13% Similarity=0.017 Sum_probs=58.1
Q ss_pred CCeehHHHHHHHHhcCCC-CCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCC
Q 028320 9 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSAR 87 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~-~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~ 87 (210)
+..+.|..+++++.+... ..+|+||-+... +...+.++..+ +.+.....+...+.-.|+.... .++++++++|.
T Consensus 9 n~~~~l~~~l~sl~~q~~~~~evivvdd~s~-d~~~~~~~~~~--~~~~~~~~g~~~a~n~g~~~a~--~~~i~~~D~D~ 83 (221)
T cd02522 9 NEAENLPRLLASLRRLNPLPLEIIVVDGGST-DGTVAIARSAG--VVVISSPKGRARQMNAGAAAAR--GDWLLFLHADT 83 (221)
T ss_pred CcHHHHHHHHHHHHhccCCCcEEEEEeCCCC-ccHHHHHhcCC--eEEEeCCcCHHHHHHHHHHhcc--CCEEEEEcCCC
Confidence 445578888888766432 246766644432 34445555533 4444433344555556777765 78999999997
Q ss_pred CCCCHHHHHHHHHHHHhcCC
Q 028320 88 PLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 88 Pli~~~~i~~~i~~~~~~~~ 107 (210)
.+++..+++++......+.
T Consensus 84 -~~~~~~l~~l~~~~~~~~~ 102 (221)
T cd02522 84 -RLPPDWDAAIIETLRADGA 102 (221)
T ss_pred -CCChhHHHHHHHHhhcCCc
Confidence 5589999998766654443
No 127
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=93.47 E-value=1.7 Score=34.15 Aligned_cols=95 Identities=17% Similarity=0.119 Sum_probs=55.7
Q ss_pred CCeehHHHHHHHHhcCC-C--CCeEEEEeCCCChHHHHHHHh----hcC-CcEEEec--CCccHHHHHHHHHHcccCCCC
Q 028320 9 LGQPIALYSFYTFSRMV-E--VKEIVVVCDPSYSDIFEETKE----KIN-VDLKFSL--PGKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~-~--~~~ivVv~~~~~~~~i~~~~~----~~~-~~v~~~~--~~~~~~~si~~~l~~~~~~~d 78 (210)
++..-|..+++.+.+.. . --+|+||-+... +...++++ .++ ..+.++. +..+...+...|++... .+
T Consensus 19 ne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~-D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~--g~ 95 (243)
T PLN02726 19 NERLNIALIVYLIFKALQDVKDFEIIVVDDGSP-DGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHAS--GD 95 (243)
T ss_pred CchhhHHHHHHHHHHHhccCCCeEEEEEeCCCC-CCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcC--CC
Confidence 44555666665554321 1 125666543322 33333333 333 2343332 22234566777888764 78
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
+++++++|.- .+++.+.++++.+...++
T Consensus 96 ~i~~lD~D~~-~~~~~l~~l~~~~~~~~~ 123 (243)
T PLN02726 96 FVVIMDADLS-HHPKYLPSFIKKQRETGA 123 (243)
T ss_pred EEEEEcCCCC-CCHHHHHHHHHHHHhcCC
Confidence 9999999997 599999999988765554
No 128
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=93.43 E-value=2.8 Score=36.39 Aligned_cols=95 Identities=7% Similarity=0.082 Sum_probs=60.1
Q ss_pred cCCeehHHHHHHHHhcCCCC-C--eEEEEeCCCChHHHHHHH----hhcC-CcEEEecCCccHHHHHHHHHHcccCCCCE
Q 028320 8 LLGQPIALYSFYTFSRMVEV-K--EIVVVCDPSYSDIFEETK----EKIN-VDLKFSLPGKERQDSVYSGLQEVDFNSEL 79 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~-~--~ivVv~~~~~~~~i~~~~----~~~~-~~v~~~~~~~~~~~si~~~l~~~~~~~d~ 79 (210)
.|+...|..+++++.+...- + +|+|+-+.. .+...+.+ +.++ ..+.......+...++-.|++... .++
T Consensus 58 yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~S-tD~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN~gl~~s~--g~~ 134 (439)
T TIGR03111 58 YNSEDTLFNCIESIYNQTYPIELIDIILANNQS-TDDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNAAIYNSI--GKY 134 (439)
T ss_pred CCChHHHHHHHHHHHhcCCCCCCeEEEEEECCC-ChhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHcc--CCE
Confidence 36777889999998765432 2 355553332 23333332 2332 223333333344667778888764 789
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVG 106 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~ 106 (210)
|+++|+|.=+ +++.++++++.+.+..
T Consensus 135 v~~~DaD~~~-~~d~L~~l~~~f~~~~ 160 (439)
T TIGR03111 135 IIHIDSDGKL-HKDAIKNMVTRFENNP 160 (439)
T ss_pred EEEECCCCCc-ChHHHHHHHHHHHhCC
Confidence 9999999854 9999999999887543
No 129
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=93.23 E-value=2.2 Score=34.76 Aligned_cols=96 Identities=14% Similarity=0.005 Sum_probs=60.1
Q ss_pred CCe-ehHHHHHHHHhcCCCC---CeEEEEeCCCChHHHHHHH-----hhcCCcEEEecC--CccHHHHHHHHHHcccCCC
Q 028320 9 LGQ-PIALYSFYTFSRMVEV---KEIVVVCDPSYSDIFEETK-----EKINVDLKFSLP--GKERQDSVYSGLQEVDFNS 77 (210)
Q Consensus 9 ~gk-pli~~~i~~~~~~~~~---~~ivVv~~~~~~~~i~~~~-----~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~ 77 (210)
+.. ..|..+++++.+...- .+||||-+... +...+.+ ......+.++.. ..+...+.-.|++... .
T Consensus 8 N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~-d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~--g 84 (299)
T cd02510 8 NEALSTLLRTVHSVINRTPPELLKEIILVDDFSD-KPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAAT--G 84 (299)
T ss_pred cCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCC-chHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHcc--C
Confidence 444 5888899988754321 37777754432 2222222 222234555432 2233555666777764 7
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHhcCCe
Q 028320 78 ELVCIHDSARPLVLSKDVQKVLMDALRVGAA 108 (210)
Q Consensus 78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~ 108 (210)
++++++++|.=+ +++-++.+++.+...+.+
T Consensus 85 d~i~fLD~D~~~-~~~wL~~ll~~l~~~~~~ 114 (299)
T cd02510 85 DVLVFLDSHCEV-NVGWLEPLLARIAENRKT 114 (299)
T ss_pred CEEEEEeCCccc-CccHHHHHHHHHHhCCCe
Confidence 999999999876 899999999988765443
No 130
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=93.15 E-value=2.3 Score=36.99 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=59.5
Q ss_pred CCeehHHHHHHHHhcCCCC-CeEEEEeCCCCh---HHHHHHHhhcCCcEEEe--cCCccHHHHHHHHHHcccCCCCEEEE
Q 028320 9 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSYS---DIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~~---~~i~~~~~~~~~~v~~~--~~~~~~~~si~~~l~~~~~~~d~vl~ 82 (210)
|...-|..+++++.+.... -+|+|+.+.... +.+++..++++ .+.++ .+..+...++..|+.... .|++++
T Consensus 85 NE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~-~v~vv~~~~n~Gka~AlN~gl~~a~--~d~iv~ 161 (444)
T PRK14583 85 NEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDP-RLRVIHLAHNQGKAIALRMGAAAAR--SEYLVC 161 (444)
T ss_pred CCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-CEEEEEeCCCCCHHHHHHHHHHhCC--CCEEEE
Confidence 4556688899988765432 367776554331 22233333332 23333 233345677788887754 799999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc
Q 028320 83 HDSARPLVLSKDVQKVLMDALRV 105 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~~i~~~~~~ 105 (210)
+|+|. ..+++.+.++++.+.+.
T Consensus 162 lDAD~-~~~~d~L~~lv~~~~~~ 183 (444)
T PRK14583 162 IDGDA-LLDKNAVPYLVAPLIAN 183 (444)
T ss_pred ECCCC-CcCHHHHHHHHHHHHhC
Confidence 99998 57999999999887654
No 131
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=93.04 E-value=2.8 Score=31.66 Aligned_cols=94 Identities=11% Similarity=0.087 Sum_probs=58.7
Q ss_pred cCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh-hc-CCcEEEec-----CCccHHHHHHHHHHcccC-----
Q 028320 8 LLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE-KI-NVDLKFSL-----PGKERQDSVYSGLQEVDF----- 75 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~-~~-~~~v~~~~-----~~~~~~~si~~~l~~~~~----- 75 (210)
.++...|..+++++.+...-.+|+|+-+... +...++++ .. ...+.++. ...+...++..|++.+..
T Consensus 6 ~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~-D~t~~~~~~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~ 84 (191)
T cd06436 6 LNEEAVIQRTLASLLRNKPNFLVLVIDDASD-DDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEE 84 (191)
T ss_pred cccHHHHHHHHHHHHhCCCCeEEEEEECCCC-cCHHHHHhheecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhcccc
Confidence 4677788999999876542236666655443 44445554 21 22344332 123446777778877531
Q ss_pred ----CCCEEEEEeCCCCCCCHHHHHHHHHHHH
Q 028320 76 ----NSELVCIHDSARPLVLSKDVQKVLMDAL 103 (210)
Q Consensus 76 ----~~d~vl~~~~d~Pli~~~~i~~~i~~~~ 103 (210)
+.++|+++++|.- ++++.++.+...+.
T Consensus 85 g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~ 115 (191)
T cd06436 85 GADPERVIIAVIDADGR-LDPNALEAVAPYFS 115 (191)
T ss_pred ccCCCccEEEEECCCCC-cCHhHHHHHHHhhc
Confidence 2479999999986 78888888776554
No 132
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.62 E-value=1.7 Score=37.17 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=65.3
Q ss_pred CCee-hHHHHHHHHhcCCCCC-eEEEEeCCCChHHHHHHHhhcCC----cEEEe---cCCccHHHHHHHHHHcccCCCCE
Q 028320 9 LGQP-IALYSFYTFSRMVEVK-EIVVVCDPSYSDIFEETKEKINV----DLKFS---LPGKERQDSVYSGLQEVDFNSEL 79 (210)
Q Consensus 9 ~gkp-li~~~i~~~~~~~~~~-~ivVv~~~~~~~~i~~~~~~~~~----~v~~~---~~~~~~~~si~~~l~~~~~~~d~ 79 (210)
|..+ .++.+++++.+...-. +++|+.+... +...+.+++++. .+... ........++..|+.... .|+
T Consensus 64 nE~~~~~~~~l~s~~~~dyp~~evivv~d~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~~~--~d~ 140 (439)
T COG1215 64 NEEPEVLEETLESLLSQDYPRYEVIVVDDGST-DETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAK--GDV 140 (439)
T ss_pred CCchhhHHHHHHHHHhCCCCCceEEEECCCCC-hhHHHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhhcC--CCE
Confidence 5666 8999999998776443 6777776443 445555555432 23332 122233667778887765 799
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCe
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVGAA 108 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~ 108 (210)
|++.|+|. ...++.+.+++..+...+.+
T Consensus 141 V~~~DaD~-~~~~d~l~~~~~~f~~~~~~ 168 (439)
T COG1215 141 VVILDADT-VPEPDALRELVSPFEDPPVG 168 (439)
T ss_pred EEEEcCCC-CCChhHHHHHHhhhcCCCee
Confidence 99999998 46889999999888765443
No 133
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=92.22 E-value=4.6 Score=31.60 Aligned_cols=93 Identities=10% Similarity=0.094 Sum_probs=59.5
Q ss_pred CCeehHHHHHHHHhcCCCC-C--eEEEEeCCCChHHHHHHHhhcCC----cEEEecC--CccHHHHHHHHHHcccCCCCE
Q 028320 9 LGQPIALYSFYTFSRMVEV-K--EIVVVCDPSYSDIFEETKEKINV----DLKFSLP--GKERQDSVYSGLQEVDFNSEL 79 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~-~--~ivVv~~~~~~~~i~~~~~~~~~----~v~~~~~--~~~~~~si~~~l~~~~~~~d~ 79 (210)
|..-.|..+++++.+...- + +|+||.+... +...++++++.. .+..... ..+...++..|++... .|+
T Consensus 11 Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~-d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a~--gd~ 87 (241)
T cd06427 11 KEAEVLPQLIASLSALDYPRSKLDVKLLLEEDD-EETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFAR--GEY 87 (241)
T ss_pred CcHHHHHHHHHHHHhCcCCcccEEEEEEECCCC-chHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhcC--CCE
Confidence 4445678888888764321 1 4655544433 344555555432 3333332 2234667778888764 799
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRV 105 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~ 105 (210)
|+++++|.= +.++.+.++++.+...
T Consensus 88 i~~~DaD~~-~~~~~l~~~~~~~~~~ 112 (241)
T cd06427 88 VVIYDAEDA-PDPDQLKKAVAAFARL 112 (241)
T ss_pred EEEEcCCCC-CChHHHHHHHHHHHhc
Confidence 999999985 7899999999988643
No 134
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=91.80 E-value=3.4 Score=35.14 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=61.8
Q ss_pred cCCeehHHHHHHHHhcCCCC--CeEEEEeCCCChHHHHHHHhh----cC--CcEEEecCC------ccHHHHHHHHHHcc
Q 028320 8 LLGQPIALYSFYTFSRMVEV--KEIVVVCDPSYSDIFEETKEK----IN--VDLKFSLPG------KERQDSVYSGLQEV 73 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~--~~ivVv~~~~~~~~i~~~~~~----~~--~~v~~~~~~------~~~~~si~~~l~~~ 73 (210)
-|+.+.|..+++++.+...- -+|+||-+... +...+++++ ++ ..+.++.+. .....++..|++..
T Consensus 49 ~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~St-D~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A 127 (384)
T TIGR03469 49 RNEADVIGECVTSLLEQDYPGKLHVILVDDHST-DGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAA 127 (384)
T ss_pred CCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCC-CcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHH
Confidence 36778899999998765432 26776655432 333444433 22 134444321 12345666777765
Q ss_pred cC---CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 74 DF---NSELVCIHDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 74 ~~---~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
.. +.|+++++|+|.= +.++.++++++.+...+.
T Consensus 128 ~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~~~ 163 (384)
T TIGR03469 128 RTLAPPADYLLLTDADIA-HGPDNLARLVARARAEGL 163 (384)
T ss_pred hccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhCCC
Confidence 42 2689999999985 689999999998876553
No 135
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=91.41 E-value=4.9 Score=30.31 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=56.1
Q ss_pred CCeehHHHHHHHHhcCCCC-CeEEEEeCCCCh---HHHHHHHhhcC-CcEEEecC----Cc-cHHHHHHHHHHcccCCCC
Q 028320 9 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSYS---DIFEETKEKIN-VDLKFSLP----GK-ERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~~---~~i~~~~~~~~-~~v~~~~~----~~-~~~~si~~~l~~~~~~~d 78 (210)
++.+-|..+++++.+...- -+|+||.+.... ..++++.++++ ..+.++.. |. ....++..|++... .|
T Consensus 11 n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~--~d 88 (196)
T cd02520 11 GVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEAR--YD 88 (196)
T ss_pred CCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCC--CC
Confidence 5566788889988764321 366666554431 12233333433 23333322 11 12334556777654 79
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVG 106 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~ 106 (210)
+++++++|.- ++++.++.+++.+...+
T Consensus 89 ~i~~~D~D~~-~~~~~l~~l~~~~~~~~ 115 (196)
T cd02520 89 ILVISDSDIS-VPPDYLRRMVAPLMDPG 115 (196)
T ss_pred EEEEECCCce-EChhHHHHHHHHhhCCC
Confidence 9999999984 59999999998865433
No 136
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=91.31 E-value=3.2 Score=34.08 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=64.0
Q ss_pred ceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhc-CCcEEEecCCccH--HHHHHHHHHcccCC-CCEE
Q 028320 5 YLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-NVDLKFSLPGKER--QDSVYSGLQEVDFN-SELV 80 (210)
Q Consensus 5 l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~-~~~v~~~~~~~~~--~~si~~~l~~~~~~-~d~v 80 (210)
+...+...-+...+..+.+....+..+|+++....+...+.++.. ...+.++..+... +.+.-.|+.....+ .+++
T Consensus 9 iv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~~~ 88 (305)
T COG1216 9 IVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARFFPNVRLIENGENLGFAGGFNRGIKYALAKGDDYV 88 (305)
T ss_pred EEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhcCCcEEEEEcCCCccchhhhhHHHHHHhcCCCcEE
Confidence 345677788888888887776555555544543333344555554 3456665442222 23333344444222 2389
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAV 109 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~ 109 (210)
+++..| =.+++..++++++.++..+.+.
T Consensus 89 l~LN~D-~~~~~~~l~~ll~~~~~~~~~~ 116 (305)
T COG1216 89 LLLNPD-TVVEPDLLEELLKAAEEDPAAG 116 (305)
T ss_pred EEEcCC-eeeChhHHHHHHHHHHhCCCCe
Confidence 999999 5679999999999998876543
No 137
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.86 E-value=5 Score=30.24 Aligned_cols=95 Identities=17% Similarity=0.130 Sum_probs=55.4
Q ss_pred cCCeehHHHHHHHHhcCCCC-CeEEEEeCCCC---hHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCCEEE
Q 028320 8 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSY---SDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVC 81 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~---~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d~vl 81 (210)
.+....|..+++++.+...- -+|+||-+... .+.+++...+++..+.+... ..+...+...|+.... .++|+
T Consensus 7 yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~--g~~v~ 84 (214)
T cd04196 7 YNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAAD--GDYVF 84 (214)
T ss_pred cCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCC--CCEEE
Confidence 34555788888887654321 25666544322 12233333333323333322 2234556666776654 79999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc
Q 028320 82 IHDSARPLVLSKDVQKVLMDALRV 105 (210)
Q Consensus 82 ~~~~d~Pli~~~~i~~~i~~~~~~ 105 (210)
++++|- .+.++.+..+++.+...
T Consensus 85 ~ld~Dd-~~~~~~l~~~~~~~~~~ 107 (214)
T cd04196 85 FCDQDD-IWLPDKLERLLKAFLKD 107 (214)
T ss_pred EECCCc-ccChhHHHHHHHHHhcC
Confidence 999995 55799999999885443
No 138
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=90.85 E-value=6.2 Score=33.40 Aligned_cols=96 Identities=11% Similarity=0.146 Sum_probs=59.3
Q ss_pred CCeehHHHHHHHHhcCCCC-CeEEEEeCCCC---hHHHHHHHhhcC-CcEEEecC----Cc-cHHHHHHHHHHcccCCCC
Q 028320 9 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSY---SDIFEETKEKIN-VDLKFSLP----GK-ERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~---~~~i~~~~~~~~-~~v~~~~~----~~-~~~~si~~~l~~~~~~~d 78 (210)
|+.+-|..+++++.+...- -+|+|+.++.. .+.+++..++++ ..+.++.. |. ....++.++++..+ .|
T Consensus 51 nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a~--ge 128 (373)
T TIGR03472 51 GDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHAR--HD 128 (373)
T ss_pred CCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhcc--CC
Confidence 5778899999998765433 36777654432 122334444443 33544422 11 12344555555543 79
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
+++++|+|. .++++-++.++..+++.+.
T Consensus 129 ~i~~~DaD~-~~~p~~L~~lv~~~~~~~v 156 (373)
T TIGR03472 129 ILVIADSDI-SVGPDYLRQVVAPLADPDV 156 (373)
T ss_pred EEEEECCCC-CcChhHHHHHHHHhcCCCc
Confidence 999999997 5599999999988865443
No 139
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=90.78 E-value=5.4 Score=30.77 Aligned_cols=88 Identities=14% Similarity=0.103 Sum_probs=56.0
Q ss_pred ecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhc-CCcEEEec--CCccHHHHHHHHHHcccC-CCCEEE
Q 028320 7 PLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-NVDLKFSL--PGKERQDSVYSGLQEVDF-NSELVC 81 (210)
Q Consensus 7 ~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~-~~~v~~~~--~~~~~~~si~~~l~~~~~-~~d~vl 81 (210)
..++. ..|..+++++.+. ..+|+||=+... +..... ..+ ...+.++. ...+...+.-.|++.... +.|+++
T Consensus 5 ~yn~~~~~l~~~l~sl~~q--~~~iivvDn~s~-~~~~~~-~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~ 80 (237)
T cd02526 5 TYNPDLSKLKELLAALAEQ--VDKVVVVDNSSG-NDIELR-LRLNSEKIELIHLGENLGIAKALNIGIKAALENGADYVL 80 (237)
T ss_pred EecCCHHHHHHHHHHHhcc--CCEEEEEeCCCC-ccHHHH-hhccCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEEE
Confidence 45677 8899999998764 467777644433 222222 222 22333332 223345666778877642 469999
Q ss_pred EEeCCCCCCCHHHHHHHH
Q 028320 82 IHDSARPLVLSKDVQKVL 99 (210)
Q Consensus 82 ~~~~d~Pli~~~~i~~~i 99 (210)
++++|.-+ +++.++.++
T Consensus 81 ~lD~D~~~-~~~~l~~l~ 97 (237)
T cd02526 81 LFDQDSVP-PPDMVEKLL 97 (237)
T ss_pred EECCCCCc-CHhHHHHHH
Confidence 99999975 799999996
No 140
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=90.72 E-value=6.2 Score=36.66 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=63.1
Q ss_pred ceecCCee--hHHHHHHHHhcCCCC-C--eEEEEeCCC-----------------ChHHHHHHHhhcCCcEEEecCCc-c
Q 028320 5 YLPLLGQP--IALYSFYTFSRMVEV-K--EIVVVCDPS-----------------YSDIFEETKEKINVDLKFSLPGK-E 61 (210)
Q Consensus 5 l~~i~gkp--li~~~i~~~~~~~~~-~--~ivVv~~~~-----------------~~~~i~~~~~~~~~~v~~~~~~~-~ 61 (210)
+.|.-+.+ +++.+++++.+...- + +|+|+-|.. ..+.++++++++++......... .
T Consensus 136 iIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r~~n~~~ 215 (713)
T TIGR03030 136 FIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRPRNVHA 215 (713)
T ss_pred EEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEECCCCCCC
Confidence 34555554 567889988765543 2 566664431 12356677777764432212111 2
Q ss_pred HHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320 62 RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 105 (210)
Q Consensus 62 ~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~ 105 (210)
...++-+|++..+ .|+++++|+|.= .+++.+++++..+...
T Consensus 216 KAgnLN~al~~a~--gd~Il~lDAD~v-~~pd~L~~~v~~f~~d 256 (713)
T TIGR03030 216 KAGNINNALKHTD--GELILIFDADHV-PTRDFLQRTVGWFVED 256 (713)
T ss_pred ChHHHHHHHHhcC--CCEEEEECCCCC-cChhHHHHHHHHHHhC
Confidence 2566788888765 799999999995 4799999999888654
No 141
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=90.22 E-value=2.2 Score=28.31 Aligned_cols=82 Identities=20% Similarity=0.084 Sum_probs=48.1
Q ss_pred CeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC-CcEEEecC-C--ccHHHHHHHHHHcccCCCCEEEEEeC
Q 028320 10 GQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN-VDLKFSLP-G--KERQDSVYSGLQEVDFNSELVCIHDS 85 (210)
Q Consensus 10 gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~-~~v~~~~~-~--~~~~~si~~~l~~~~~~~d~vl~~~~ 85 (210)
.-++|..-+.-..+.| +++++|..+... +...++++++. +.+..... . ..+.....+++..-..+.+.++.+++
T Consensus 3 e~~~L~~wl~~~~~lG-~d~i~i~d~~s~-D~t~~~l~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~ 80 (97)
T PF13704_consen 3 EADYLPEWLAHHLALG-VDHIYIYDDGST-DGTREILRALPGVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDA 80 (97)
T ss_pred hHHHHHHHHHHHHHcC-CCEEEEEECCCC-ccHHHHHHhCCCcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEee
Confidence 3456777777776665 899999876554 44566776653 22222222 1 11233344444332235799999999
Q ss_pred CCCCCCHH
Q 028320 86 ARPLVLSK 93 (210)
Q Consensus 86 d~Pli~~~ 93 (210)
|.=+..+.
T Consensus 81 DEfl~~~~ 88 (97)
T PF13704_consen 81 DEFLVPPP 88 (97)
T ss_pred eEEEecCC
Confidence 98776554
No 142
>PRK10073 putative glycosyl transferase; Provisional
Probab=90.19 E-value=8.2 Score=32.14 Aligned_cols=97 Identities=15% Similarity=0.051 Sum_probs=60.2
Q ss_pred CCeehHHHHHHHHhcCCCC-CeEEEEeCCCChHHHHHHHhhc---CCcEEEecC-CccHHHHHHHHHHcccCCCCEEEEE
Q 028320 9 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKI---NVDLKFSLP-GKERQDSVYSGLQEVDFNSELVCIH 83 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~~~~i~~~~~~~---~~~v~~~~~-~~~~~~si~~~l~~~~~~~d~vl~~ 83 (210)
+....|..+++++.+.... -+|+||-+... +...++++.+ ...+.+... ..+.+.+.-.|++... .++++++
T Consensus 16 N~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgSt-D~t~~i~~~~~~~~~~i~vi~~~n~G~~~arN~gl~~a~--g~yi~fl 92 (328)
T PRK10073 16 NAGKDFRAFMESLIAQTWTALEIIIVNDGST-DNSVEIAKHYAENYPHVRLLHQANAGVSVARNTGLAVAT--GKYVAFP 92 (328)
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEEeCCCC-ccHHHHHHHHHhhCCCEEEEECCCCChHHHHHHHHHhCC--CCEEEEE
Confidence 6667899999998765322 25666544332 2233333332 123444332 2233555566888765 7999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028320 84 DSARPLVLSKDVQKVLMDALRVGAAV 109 (210)
Q Consensus 84 ~~d~Pli~~~~i~~~i~~~~~~~~~~ 109 (210)
++|-= +.++.++.+++.+...+..+
T Consensus 93 D~DD~-~~p~~l~~l~~~~~~~~~dv 117 (328)
T PRK10073 93 DADDV-VYPTMYETLMTMALEDDLDV 117 (328)
T ss_pred CCCCc-cChhHHHHHHHHHHhCCCCE
Confidence 99975 67999999998876655433
No 143
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=90.19 E-value=5.2 Score=30.74 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=56.6
Q ss_pred CCeehHHHHHHHHhc-CCCCCeEEEEeCCCC--h-HHHHHHHhhcCC-cEEEecCCc--cHHHHHHHHHHcccCCCCEEE
Q 028320 9 LGQPIALYSFYTFSR-MVEVKEIVVVCDPSY--S-DIFEETKEKINV-DLKFSLPGK--ERQDSVYSGLQEVDFNSELVC 81 (210)
Q Consensus 9 ~gkpli~~~i~~~~~-~~~~~~ivVv~~~~~--~-~~i~~~~~~~~~-~v~~~~~~~--~~~~si~~~l~~~~~~~d~vl 81 (210)
.+-|++.|.+..... .+.--+|++|-+... . +..+.+.+-||- ++.+.+... +..++..+|+.... .++++
T Consensus 16 ~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a~--g~fiv 93 (238)
T KOG2978|consen 16 ENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHAT--GDFIV 93 (238)
T ss_pred CCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhcc--CCeEE
Confidence 355788887776543 332235655543321 1 222333333553 344433222 23667789998876 68999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320 82 IHDSARPLVLSKDVQKVLMDALRVG 106 (210)
Q Consensus 82 ~~~~d~Pli~~~~i~~~i~~~~~~~ 106 (210)
++|+|.-- .|..|-++|+..++..
T Consensus 94 iMDaDlsH-hPk~ipe~i~lq~~~~ 117 (238)
T KOG2978|consen 94 IMDADLSH-HPKFIPEFIRLQKEGN 117 (238)
T ss_pred EEeCccCC-CchhHHHHHHHhhccC
Confidence 99998643 6788888988777654
No 144
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=90.16 E-value=6.8 Score=29.80 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=56.7
Q ss_pred CCeehHHHHHHHHhcCC-----CCCeEEEEeCCCChHHHHHHHh----hcCCcEEEec--CCccHHHHHHHHHHcccCCC
Q 028320 9 LGQPIALYSFYTFSRMV-----EVKEIVVVCDPSYSDIFEETKE----KINVDLKFSL--PGKERQDSVYSGLQEVDFNS 77 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~-----~~~~ivVv~~~~~~~~i~~~~~----~~~~~v~~~~--~~~~~~~si~~~l~~~~~~~ 77 (210)
++..-|..+++.+.+.. .-.+|+|+-+... +...+.++ +++..+.++. ...+...++..|++... .
T Consensus 7 N~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~-D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~--g 83 (211)
T cd04188 7 NEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSK-DGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAAR--G 83 (211)
T ss_pred ChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCC-CchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhc--C
Confidence 44455666676665431 1246666643332 22333333 3343323332 22344677888888875 6
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 78 ELVCIHDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
|+++++++|.- .+++.+..+++.+...+.
T Consensus 84 d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~ 112 (211)
T cd04188 84 DYILFADADLA-TPFEELEKLEEALKTSGY 112 (211)
T ss_pred CEEEEEeCCCC-CCHHHHHHHHHHHhccCC
Confidence 99999999975 789999999988554443
No 145
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=90.03 E-value=5.8 Score=33.15 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=55.2
Q ss_pred cCCeehHHHHHHHHhcC---------CCCCeEEEEeCCCChHHHHHHHhhc-------CCcEEEec--CCccHHHHHHHH
Q 028320 8 LLGQPIALYSFYTFSRM---------VEVKEIVVVCDPSYSDIFEETKEKI-------NVDLKFSL--PGKERQDSVYSG 69 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~---------~~~~~ivVv~~~~~~~~i~~~~~~~-------~~~v~~~~--~~~~~~~si~~~ 69 (210)
.|+.+-|..+++++.+. ..--+|+||-+.. .+...++++++ +..+.++. ...+...++..|
T Consensus 79 yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgS-tD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~G 157 (333)
T PTZ00260 79 YNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGS-KDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIG 157 (333)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCC-CCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHHH
Confidence 36666677777766431 1123666665432 23333333332 11244432 223446778889
Q ss_pred HHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320 70 LQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 70 l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~ 104 (210)
+.... .|+++++++|. -.+++.+..+++.+..
T Consensus 158 i~~a~--gd~I~~~DaD~-~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 158 MLASR--GKYILMVDADG-ATDIDDFDKLEDIMLK 189 (333)
T ss_pred HHHcc--CCEEEEEeCCC-CCCHHHHHHHHHHHHH
Confidence 98764 78999999998 4577888888887753
No 146
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=89.88 E-value=6.2 Score=28.96 Aligned_cols=90 Identities=10% Similarity=0.034 Sum_probs=55.2
Q ss_pred CCeehHHHHHHHHhcCCC-CCeEEEEeCCCChHHHHHHHhhc----CCcEEEe-cC--CccHHHHHHHHHHcccCCCCEE
Q 028320 9 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKI----NVDLKFS-LP--GKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~-~~~ivVv~~~~~~~~i~~~~~~~----~~~v~~~-~~--~~~~~~si~~~l~~~~~~~d~v 80 (210)
+....+..+++++.+... -.+|+|+-+... +...++++++ +.++..+ .. +-....+.-.|++... .+++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~--g~~i 83 (182)
T cd06420 7 NRPEALELVLKSVLNQSILPFEVIIADDGST-EETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAK--GDYL 83 (182)
T ss_pred CChHHHHHHHHHHHhccCCCCEEEEEeCCCc-hhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhc--CCEE
Confidence 455678889999876432 246776655443 3344444443 2223322 11 1122344555676654 7899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH
Q 028320 81 CIHDSARPLVLSKDVQKVLMDA 102 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~ 102 (210)
+++++|. .++++-+.++++.+
T Consensus 84 ~~lD~D~-~~~~~~l~~~~~~~ 104 (182)
T cd06420 84 IFIDGDC-IPHPDFIADHIELA 104 (182)
T ss_pred EEEcCCc-ccCHHHHHHHHHHh
Confidence 9999998 66899999998876
No 147
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=88.82 E-value=8 Score=29.58 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=56.0
Q ss_pred cCCeehHHHHHHHHhcCCCC--CeEEEEeCCCChHHHHHHHhh----cC-CcEEEe--c--C--CccHHHHHHHHHHccc
Q 028320 8 LLGQPIALYSFYTFSRMVEV--KEIVVVCDPSYSDIFEETKEK----IN-VDLKFS--L--P--GKERQDSVYSGLQEVD 74 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~--~~ivVv~~~~~~~~i~~~~~~----~~-~~v~~~--~--~--~~~~~~si~~~l~~~~ 74 (210)
.++...|..+++++.+...- -+|+||-+... +...+++++ +. ..+.+. . . ..+...+.-.|++...
T Consensus 6 yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~-d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a~ 84 (219)
T cd06913 6 HNGEQWLDECLESVLQQDFEGTLELSVFNDAST-DKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQSS 84 (219)
T ss_pred cCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC-ccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhcC
Confidence 46667888999998764322 26666654432 222333333 22 122222 1 1 1233444556776654
Q ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028320 75 FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV 109 (210)
Q Consensus 75 ~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~ 109 (210)
.|+++++++|-- ..++.+.+++..+.+....+
T Consensus 85 --gd~i~~lD~D~~-~~~~~l~~~~~~~~~~~~~~ 116 (219)
T cd06913 85 --GRYLCFLDSDDV-MMPQRIRLQYEAALQHPNSI 116 (219)
T ss_pred --CCEEEEECCCcc-CChhHHHHHHHHHHhCCCcE
Confidence 799999999975 56677888877776544433
No 148
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=87.79 E-value=11 Score=29.12 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=55.3
Q ss_pred cCCeehHHHHHHHHhcCCCC-C--eEEEEeCCCCh--HHHHHHHhhc---CCcEEEecCC--cc-HHHHHHHHHHcccCC
Q 028320 8 LLGQPIALYSFYTFSRMVEV-K--EIVVVCDPSYS--DIFEETKEKI---NVDLKFSLPG--KE-RQDSVYSGLQEVDFN 76 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~-~--~ivVv~~~~~~--~~i~~~~~~~---~~~v~~~~~~--~~-~~~si~~~l~~~~~~ 76 (210)
.|+...|..+++++.+.... + +|+|+-++.+- +.+++..+++ +.++..+... .+ ...++-.|++..+
T Consensus 10 yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a~-- 87 (232)
T cd06437 10 FNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKVAK-- 87 (232)
T ss_pred CCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHhCC--
Confidence 46677889999998764332 2 45555443321 1223332222 3344444221 11 2455667887764
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320 77 SELVCIHDSARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~ 104 (210)
.++++++++|.= +.++.++.+...+..
T Consensus 88 ~~~i~~~DaD~~-~~~~~l~~~~~~~~~ 114 (232)
T cd06437 88 GEYVAIFDADFV-PPPDFLQKTPPYFAD 114 (232)
T ss_pred CCEEEEEcCCCC-CChHHHHHhhhhhcC
Confidence 799999999994 589999997665543
No 149
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.14 E-value=10 Score=28.02 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=54.9
Q ss_pred cCCeehHHHHHHHHhcCCCC-CeEEEEeCCCChHHHHHHHhhcCCc-EEE-ecCCccHHHHHHHHHHcccCCCCEEEEEe
Q 028320 8 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKINVD-LKF-SLPGKERQDSVYSGLQEVDFNSELVCIHD 84 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~~~~i~~~~~~~~~~-v~~-~~~~~~~~~si~~~l~~~~~~~d~vl~~~ 84 (210)
.++...|..+++++.+...- -+|+||-+.. .+...+.++++... ..+ .....+...+...|++... .+++++++
T Consensus 7 ~n~~~~l~~~l~sl~~q~~~~~evivvDd~s-~d~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a~--~~~v~~ld 83 (202)
T cd06433 7 YNQAETLEETIDSVLSQTYPNIEYIVIDGGS-TDGTVDIIKKYEDKITYWISEPDKGIYDAMNKGIALAT--GDIIGFLN 83 (202)
T ss_pred cchHHHHHHHHHHHHhCCCCCceEEEEeCCC-CccHHHHHHHhHhhcEEEEecCCcCHHHHHHHHHHHcC--CCEEEEeC
Confidence 35566788889988654322 2566653322 23345555555432 222 2233344666777888765 78999999
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 028320 85 SARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 85 ~d~Pli~~~~i~~~i~~~~~ 104 (210)
+|.=+. ++.+..++..+..
T Consensus 84 ~D~~~~-~~~~~~~~~~~~~ 102 (202)
T cd06433 84 SDDTLL-PGALLAVVAAFAE 102 (202)
T ss_pred CCcccC-chHHHHHHHHHHh
Confidence 998555 5666666644443
No 150
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=86.95 E-value=14 Score=29.58 Aligned_cols=90 Identities=9% Similarity=-0.036 Sum_probs=56.8
Q ss_pred ehHHHHHHHHhcCCCCCeEEEEeCCC-ChHHHHHHHhhcCCcEEEecCC--ccHHHHHHHHHHccc-CCCCEEEEEeCCC
Q 028320 12 PIALYSFYTFSRMVEVKEIVVVCDPS-YSDIFEETKEKINVDLKFSLPG--KERQDSVYSGLQEVD-FNSELVCIHDSAR 87 (210)
Q Consensus 12 pli~~~i~~~~~~~~~~~ivVv~~~~-~~~~i~~~~~~~~~~v~~~~~~--~~~~~si~~~l~~~~-~~~d~vl~~~~d~ 87 (210)
..|..+++++.+. ..+|+||=+.. ..+.+.++.+++ ..+.++..+ .+.+.+.-.|++.+. ...|+|++++.|.
T Consensus 8 ~~l~~~l~sl~~q--~~~iiVVDN~S~~~~~~~~~~~~~-~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~ 84 (281)
T TIGR01556 8 EHLGELITSLPKQ--VDRIIAVDNSPHSDQPLKNARLRG-QKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQDS 84 (281)
T ss_pred HHHHHHHHHHHhc--CCEEEEEECcCCCcHhHHHHhccC-CCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4677888887754 36777765542 112344444433 245554322 233556666776653 3579999999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 028320 88 PLVLSKDVQKVLMDALRV 105 (210)
Q Consensus 88 Pli~~~~i~~~i~~~~~~ 105 (210)
-+ .++.+..+++.+...
T Consensus 85 ~~-~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 85 RP-GNAFLAAQWKLLSAE 101 (281)
T ss_pred CC-CHHHHHHHHHHHHhc
Confidence 55 689999999888654
No 151
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=86.44 E-value=27 Score=32.47 Aligned_cols=99 Identities=5% Similarity=0.050 Sum_probs=60.9
Q ss_pred ceecCCeeh------HHHHHHHHhcCCCCC--eEEEEeCCCChHH--------HHHHHhhcC--CcEEEec---CCccHH
Q 028320 5 YLPLLGQPI------ALYSFYTFSRMVEVK--EIVVVCDPSYSDI--------FEETKEKIN--VDLKFSL---PGKERQ 63 (210)
Q Consensus 5 l~~i~gkpl------i~~~i~~~~~~~~~~--~ivVv~~~~~~~~--------i~~~~~~~~--~~v~~~~---~~~~~~ 63 (210)
+.|+.|.+. |+-+++.+.+.+.-+ +++|+.|..+ +. +.+++++++ ..+.+.. +.....
T Consensus 129 liP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d-~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~Ka 207 (691)
T PRK05454 129 LMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRD-PDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKA 207 (691)
T ss_pred EEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCC-hhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccH
Confidence 455556653 555566555444333 5677666654 22 235556653 2444432 211225
Q ss_pred HHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320 64 DSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 105 (210)
Q Consensus 64 ~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~ 105 (210)
..+..+++....+.|+++++|+|. .++++.+.+++..+...
T Consensus 208 GNl~~~~~~~~~~~eyivvLDADs-~m~~d~L~~lv~~m~~d 248 (691)
T PRK05454 208 GNIADFCRRWGGAYDYMVVLDADS-LMSGDTLVRLVRLMEAN 248 (691)
T ss_pred HHHHHHHHhcCCCcCEEEEEcCCC-CCCHHHHHHHHHHHhhC
Confidence 566677776554679999999998 67899999999988644
No 152
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=85.10 E-value=1.7 Score=38.29 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=61.9
Q ss_pred CCccceec---CCeehHHHHHHHHhcCC------------CCCeEEEEeCCCChHHHHHHHhhc---CC---cEE-----
Q 028320 1 MPKQYLPL---LGQPIALYSFYTFSRMV------------EVKEIVVVCDPSYSDIFEETKEKI---NV---DLK----- 54 (210)
Q Consensus 1 ~~K~l~~i---~gkpli~~~i~~~~~~~------------~~~~ivVv~~~~~~~~i~~~~~~~---~~---~v~----- 54 (210)
.||+++++ .|+|++++.++++.... ..-.++|.|+....+.+.+..+++ |. .+.
T Consensus 124 ~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~ 203 (482)
T PTZ00339 124 KPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQS 203 (482)
T ss_pred CCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecC
Confidence 49999999 59999999999997641 123567777765446677766642 21 111
Q ss_pred ---------------------EecCCccHHHHHHHHHHc------ccC-CCCEEEEEeCCCCCC---CHHHHHHHHH
Q 028320 55 ---------------------FSLPGKERQDSVYSGLQE------VDF-NSELVCIHDSARPLV---LSKDVQKVLM 100 (210)
Q Consensus 55 ---------------------~~~~~~~~~~si~~~l~~------~~~-~~d~vl~~~~d~Pli---~~~~i~~~i~ 100 (210)
+.++| ...+..+|.. +.. .-+++.+...|.++. +|..|-.+++
T Consensus 204 ~~P~i~~~~g~ill~~~~~i~~~P~G---nGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~ 277 (482)
T PTZ00339 204 SLPCYDENTGRFIMSSQGSLCTAPGG---NGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASS 277 (482)
T ss_pred CcceEecCCCCcccCCCCceeeCCCC---CcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHH
Confidence 11112 3445555532 221 357899999999965 7777776664
No 153
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=84.94 E-value=3.7 Score=31.55 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=55.4
Q ss_pred CCeehHHHHHHHHhcCCCC-CeEEEEeCCCC--h-HHHHHHHhhcCC-cEEEecCCc-----cHHHHHHHHHHcccCCCC
Q 028320 9 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSY--S-DIFEETKEKINV-DLKFSLPGK-----ERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~--~-~~i~~~~~~~~~-~v~~~~~~~-----~~~~si~~~l~~~~~~~d 78 (210)
+..+.|..+++++.+.... -+|+|+.+... . +.++++++.++. .+.++.... ....++..|++... .|
T Consensus 11 ~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~~--~d 88 (228)
T PF13641_consen 11 NEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAAR--GD 88 (228)
T ss_dssp S-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH-----S
T ss_pred CCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhcC--CC
Confidence 4557889999998864321 24555553322 1 235555556542 345443211 23556677887765 79
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
+++++++|.=+ +++.++.++..+...+.
T Consensus 89 ~i~~lD~D~~~-~p~~l~~~~~~~~~~~~ 116 (228)
T PF13641_consen 89 YILFLDDDTVL-DPDWLERLLAAFADPGV 116 (228)
T ss_dssp EEEEE-SSEEE--CHHHHHHHHHHHBSS-
T ss_pred EEEEECCCcEE-CHHHHHHHHHHHHhCCC
Confidence 99999999765 99999999999844443
No 154
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=84.72 E-value=1.3 Score=37.00 Aligned_cols=97 Identities=11% Similarity=0.135 Sum_probs=59.8
Q ss_pred CCccceecC---CeehHHHHHHHHhcCCC----------CCeEEEEeCCCChHHHHHHHhh---cCC---cEEE------
Q 028320 1 MPKQYLPLL---GQPIALYSFYTFSRMVE----------VKEIVVVCDPSYSDIFEETKEK---INV---DLKF------ 55 (210)
Q Consensus 1 ~~K~l~~i~---gkpli~~~i~~~~~~~~----------~~~ivVv~~~~~~~~i~~~~~~---~~~---~v~~------ 55 (210)
.||.++|++ |+|++++.++++..... .=.+++.|+...-+.+.+..++ +|. .+.+
T Consensus 33 ~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~ 112 (323)
T cd04193 33 GPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKFFKENNYFGLDPEQVHFFQQGML 112 (323)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHHHHhCCcCCCCCceEEEEecCce
Confidence 389999998 79999999999987421 1245677774433556666664 232 1211
Q ss_pred -------------------ecCCccHHHHHHHHHHc------cc-CCCCEEEEEeCCCCCC---CHHHHHHHHH
Q 028320 56 -------------------SLPGKERQDSVYSGLQE------VD-FNSELVCIHDSARPLV---LSKDVQKVLM 100 (210)
Q Consensus 56 -------------------~~~~~~~~~si~~~l~~------~~-~~~d~vl~~~~d~Pli---~~~~i~~~i~ 100 (210)
.++| ...+..+|.. +. ..-+++.+...|.++. +|..+-.+++
T Consensus 113 P~~~~~g~~~l~~~~~~~~~P~G---hG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~~~Dp~~lG~~~~ 183 (323)
T cd04193 113 PCVDFDGKILLEEKGKIAMAPNG---NGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVKVADPVFIGFCIS 183 (323)
T ss_pred eeEcCCCccccCCCCccccCCCC---chHHHHHHHHCChHHHHHhCCCEEEEEEecCcccccccCHHHhHHHHH
Confidence 1112 3445554432 22 2358999999999864 6666665554
No 155
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.94 E-value=12 Score=25.12 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=48.1
Q ss_pred EEEEeCC-CChHHHHHHHhhcCCcEEEe--cCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320 30 IVVVCDP-SYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG 106 (210)
Q Consensus 30 ivVv~~~-~~~~~i~~~~~~~~~~v~~~--~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~ 106 (210)
|+|+.+. +....+++.++++|....+. .++.....+ .++..=.+.|.|++... +++.+....+-+.++..+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~---~l~~~i~~aD~VIv~t~---~vsH~~~~~vk~~akk~~ 75 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKAS---RLPSKIKKADLVIVFTD---YVSHNAMWKVKKAAKKYG 75 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchh---HHHHhcCCCCEEEEEeC---CcChHHHHHHHHHHHHcC
Confidence 5677773 33367888999999887777 332222211 12221124788888877 999999999988887766
Q ss_pred CeE
Q 028320 107 AAV 109 (210)
Q Consensus 107 ~~~ 109 (210)
.-+
T Consensus 76 ip~ 78 (97)
T PF10087_consen 76 IPI 78 (97)
T ss_pred CcE
Confidence 433
No 156
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=75.73 E-value=6.4 Score=31.49 Aligned_cols=96 Identities=8% Similarity=0.052 Sum_probs=56.3
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCC
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARP 88 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~P 88 (210)
.--..|...+..+.+++.+.+|+|+=..+....-.......++++.++.+.......-+.-...+ ..+.|+.+|-|.
T Consensus 10 ~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~~i--~T~AVl~~DDDv- 86 (247)
T PF09258_consen 10 KRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDPEI--ETDAVLSLDDDV- 86 (247)
T ss_dssp S-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS--TT----SSEEEEEETTE-
T ss_pred cchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCcccc--CcceEEEecCCc-
Confidence 34467888999999999999999998875421111112233467777654321111112222333 378999999996
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 028320 89 LVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 89 li~~~~i~~~i~~~~~~~~ 107 (210)
.++.+.|+..++..++...
T Consensus 87 ~~~~~~l~faF~~W~~~pd 105 (247)
T PF09258_consen 87 MLSCDELEFAFQVWREFPD 105 (247)
T ss_dssp EE-HHHHHHHHHHHCCSTT
T ss_pred ccCHHHHHHHHHHHHhChh
Confidence 6699999999998876543
No 157
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=72.66 E-value=44 Score=28.64 Aligned_cols=87 Identities=18% Similarity=0.240 Sum_probs=56.5
Q ss_pred hHHHHHHHHhcCCCCCeEEEEeCCCC--hHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCC
Q 028320 13 IALYSFYTFSRMVEVKEIVVVCDPSY--SDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLV 90 (210)
Q Consensus 13 li~~~i~~~~~~~~~~~ivVv~~~~~--~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli 90 (210)
-|..++.++.+.+ |+|++.-+--. ...+++.+.++|+.+.++.... .+.+..+++. +...|++=.+..|++
T Consensus 82 Ai~~~l~~ll~~G--d~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d--~~~l~~~l~~---~t~~v~~EspsNP~l 154 (386)
T PF01053_consen 82 AISAALLALLKPG--DHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTD--LEALEAALRP---NTKLVFLESPSNPTL 154 (386)
T ss_dssp HHHHHHHHHS-TT--BEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTS--HHHHHHHHCT---TEEEEEEESSBTTTT
T ss_pred HHHHHHHhhcccC--CceEecCCccCcchhhhhhhhcccCcEEEEeCchh--HHHHHhhccc---cceEEEEEcCCCccc
Confidence 4556677776664 66655433221 1234455667888888886533 4566666544 467889999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 028320 91 LSKDVQKVLMDALRVG 106 (210)
Q Consensus 91 ~~~~i~~~i~~~~~~~ 106 (210)
..-+|..+.+..++.+
T Consensus 155 ~v~Dl~~i~~~a~~~g 170 (386)
T PF01053_consen 155 EVPDLEAIAKLAKEHG 170 (386)
T ss_dssp B---HHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhC
Confidence 9999999999988887
No 158
>PRK10063 putative glycosyl transferase; Provisional
Probab=72.55 E-value=44 Score=26.49 Aligned_cols=79 Identities=16% Similarity=0.141 Sum_probs=44.9
Q ss_pred cCCeehHHHHHHHHhc----CCCCCeEEEEeCCCChHHHHHHHhhcC--CcEEEecC-CccHHHHHHHHHHcccCCCCEE
Q 028320 8 LLGQPIALYSFYTFSR----MVEVKEIVVVCDPSYSDIFEETKEKIN--VDLKFSLP-GKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 8 i~gkpli~~~i~~~~~----~~~~~~ivVv~~~~~~~~i~~~~~~~~--~~v~~~~~-~~~~~~si~~~l~~~~~~~d~v 80 (210)
.+....|..+++.+.+ ...--+|+|| ++...+...++++++. ..+.++.. ..+...++-.|++... .++|
T Consensus 10 yN~~~~l~~~l~sl~~~~~~~~~~~EiIVv-DdgStD~t~~i~~~~~~~~~i~~i~~~~~G~~~A~N~Gi~~a~--g~~v 86 (248)
T PRK10063 10 FRNLEGIVKTHASLRHLAQDPGISFEWIVV-DGGSNDGTREFLENLNGIFNLRFVSEPDNGIYDAMNKGIAMAQ--GRFA 86 (248)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCEEEEEE-ECcCcccHHHHHHHhcccCCEEEEECCCCCHHHHHHHHHHHcC--CCEE
Confidence 4566678888888753 1111245555 3322234456666653 13444432 2234566777888765 7899
Q ss_pred EEEeCCCCC
Q 028320 81 CIHDSARPL 89 (210)
Q Consensus 81 l~~~~d~Pl 89 (210)
+++++|-=+
T Consensus 87 ~~ld~DD~~ 95 (248)
T PRK10063 87 LFLNSGDIF 95 (248)
T ss_pred EEEeCCccc
Confidence 999965433
No 159
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=71.99 E-value=49 Score=26.44 Aligned_cols=99 Identities=6% Similarity=0.065 Sum_probs=57.9
Q ss_pred ceecCCeeh--HHHHHHHHhc----CCC--CCeEEEEeCCCChHHH--------HHHHhhcC--CcEEEecC--CccH-H
Q 028320 5 YLPLLGQPI--ALYSFYTFSR----MVE--VKEIVVVCDPSYSDIF--------EETKEKIN--VDLKFSLP--GKER-Q 63 (210)
Q Consensus 5 l~~i~gkpl--i~~~i~~~~~----~~~--~~~ivVv~~~~~~~~i--------~~~~~~~~--~~v~~~~~--~~~~-~ 63 (210)
|.|+.|.+. +.-+++++.+ ... -=+|+|+-+..+ ..+ .+++++++ ..+.+... ..+. .
T Consensus 4 liP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d-~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~Ka 82 (254)
T cd04191 4 VMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRD-PDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRKA 82 (254)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCC-hHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCccH
Confidence 567777774 6667766543 111 235655544433 221 12444443 34444432 2222 4
Q ss_pred HHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320 64 DSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 105 (210)
Q Consensus 64 ~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~ 105 (210)
..+..++.....+.|+++++|+|. .+.|+.+.+++..+...
T Consensus 83 g~l~~~~~~~~~~~~~i~~~DaD~-~~~p~~l~~~v~~~~~~ 123 (254)
T cd04191 83 GNIADFCRRWGSRYDYMVVLDADS-LMSGDTIVRLVRRMEAN 123 (254)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCC-CCCHHHHHHHHHHHHhC
Confidence 556666665333579999999998 67899999999988643
No 160
>PRK10018 putative glycosyl transferase; Provisional
Probab=71.47 E-value=54 Score=26.65 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=58.1
Q ss_pred cCCeehHHHHHHHHhcCCCC-CeEEEEeCCCC-hHHHHHHHhhcC-CcEEEecCC--ccHHHHHHHHHHcccCCCCEEEE
Q 028320 8 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSY-SDIFEETKEKIN-VDLKFSLPG--KERQDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~-~~~i~~~~~~~~-~~v~~~~~~--~~~~~si~~~l~~~~~~~d~vl~ 82 (210)
.+....|..+++++.+...- -+|+||-+... .+.+.+.++.++ ..+.++... .+...+.-.|++... .++|++
T Consensus 14 yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~gi~~a~--g~~I~~ 91 (279)
T PRK10018 14 WNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQ--GEYITG 91 (279)
T ss_pred CCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcC--CCEEEE
Confidence 36777788899887654322 25666543322 134455555432 345555432 222444556887765 799999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh
Q 028320 83 HDSARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~~i~~~~~ 104 (210)
+++|-=+ .|+.+..+++.+..
T Consensus 92 lDaDD~~-~p~~l~~~~~~~~~ 112 (279)
T PRK10018 92 IDDDDEW-TPNRLSVFLAHKQQ 112 (279)
T ss_pred ECCCCCC-CccHHHHHHHHHHh
Confidence 9999744 58888888887765
No 161
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=70.98 E-value=66 Score=27.78 Aligned_cols=92 Identities=21% Similarity=0.327 Sum_probs=61.5
Q ss_pred CeehHHHHHHHHhcCCCCCeEEEEeCCCC--hHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCC
Q 028320 10 GQPIALYSFYTFSRMVEVKEIVVVCDPSY--SDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSAR 87 (210)
Q Consensus 10 gkpli~~~i~~~~~~~~~~~ivVv~~~~~--~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~ 87 (210)
|---|.-++-.+.+.+ |+|++.-+--. ...+..+.+++|+.+.++..+. ...+..++.. ++.+.|++=.+..
T Consensus 87 GmaAI~~~~l~ll~~G--D~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~--~~~~~~~~~~--~~tk~v~lEtPsN 160 (396)
T COG0626 87 GMAAISTALLALLKAG--DHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGD--DEALEAAIKE--PNTKLVFLETPSN 160 (396)
T ss_pred cHHHHHHHHHHhcCCC--CEEEecCCccchHHHHHHHHHHhcCeEEEEECCCC--hHHHHHHhcc--cCceEEEEeCCCC
Confidence 3334555566676665 67776544221 1345666778898888776543 2233333322 3578899999999
Q ss_pred CCCCHHHHHHHHHHHHhcCC
Q 028320 88 PLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 88 Pli~~~~i~~~i~~~~~~~~ 107 (210)
|++.-.+|..+.+..+..++
T Consensus 161 P~l~v~DI~~i~~~A~~~g~ 180 (396)
T COG0626 161 PLLEVPDIPAIARLAKAYGA 180 (396)
T ss_pred cccccccHHHHHHHHHhcCC
Confidence 99999999999999888773
No 162
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=70.06 E-value=22 Score=26.55 Aligned_cols=56 Identities=2% Similarity=-0.117 Sum_probs=31.4
Q ss_pred HHHHHHHHhc--CCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHH
Q 028320 14 ALYSFYTFSR--MVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSG 69 (210)
Q Consensus 14 i~~~i~~~~~--~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~ 69 (210)
+.-+|+++.- ++.+|.+++++++.+-..+...++..|..|..+......+.++.++
T Consensus 91 v~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~a 148 (160)
T TIGR00288 91 VRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIVIGAEPGFSTALQNS 148 (160)
T ss_pred HHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeCCCCChHHHHHh
Confidence 4556666533 2567888888888765445555566676654432122234444444
No 163
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=69.54 E-value=35 Score=28.50 Aligned_cols=82 Identities=10% Similarity=0.201 Sum_probs=49.5
Q ss_pred cceecCCee---hHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCc--EEEecC--CccHHHHHHHHHHccc--
Q 028320 4 QYLPLLGQP---IALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD--LKFSLP--GKERQDSVYSGLQEVD-- 74 (210)
Q Consensus 4 ~l~~i~gkp---li~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~--v~~~~~--~~~~~~si~~~l~~~~-- 74 (210)
-+.-.+.+| ++..+++.+.+.+.++..+|+|+.+. ....++.+.++.. +.+..+ +.+...++..++..+.
T Consensus 3 i~~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (365)
T TIGR00236 3 VSIVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHR-EMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEEL 81 (365)
T ss_pred EEEEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCH-HHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHH
Confidence 334445555 67889999988877899999999875 5566777677754 333322 2333333333332221
Q ss_pred ---CCCCEEEEEeCCC
Q 028320 75 ---FNSELVCIHDSAR 87 (210)
Q Consensus 75 ---~~~d~vl~~~~d~ 87 (210)
.+.|+|+++ +|.
T Consensus 82 l~~~~pDiv~~~-gd~ 96 (365)
T TIGR00236 82 LLEEKPDIVLVQ-GDT 96 (365)
T ss_pred HHHcCCCEEEEe-CCc
Confidence 246888877 554
No 164
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=69.44 E-value=20 Score=26.76 Aligned_cols=72 Identities=7% Similarity=0.125 Sum_probs=41.4
Q ss_pred CCeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccH-HHHHHHHHHccc-----CCCCEEEEEeCCCCCCCHHHHHHH
Q 028320 27 VKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKER-QDSVYSGLQEVD-----FNSELVCIHDSARPLVLSKDVQKV 98 (210)
Q Consensus 27 ~~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~-~~si~~~l~~~~-----~~~d~vl~~~~d~Pli~~~~i~~~ 98 (210)
..+.++|++.-+. .-+...++..|+.|..+.-+.-+ ..+...|++... ...|+++...+....++.++++.+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG~~~vi~~e~~~~m 100 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATGNKDVITGEHFRQM 100 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SSSSSSB-HHHHHHS
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCCCccccCHHHHHHh
Confidence 4678889999876 45566667778887766543211 233333332221 257898889999999999999776
No 165
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=68.86 E-value=76 Score=28.32 Aligned_cols=94 Identities=9% Similarity=0.017 Sum_probs=55.1
Q ss_pred cCCeehHHHHHHHH-hcCCCCC-eEEEEeCCCC---hHHHHHHHhhcCC-cEEEe--cCCccHHHHHHHHHHcc---c--
Q 028320 8 LLGQPIALYSFYTF-SRMVEVK-EIVVVCDPSY---SDIFEETKEKINV-DLKFS--LPGKERQDSVYSGLQEV---D-- 74 (210)
Q Consensus 8 i~gkpli~~~i~~~-~~~~~~~-~ivVv~~~~~---~~~i~~~~~~~~~-~v~~~--~~~~~~~~si~~~l~~~---~-- 74 (210)
.|+.-.|..+++.+ .+...-+ +|+|++++.. ...+++++++++. .+... .|..+...++-.|++.+ +
T Consensus 75 ~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~l~~~~~~e~~ 154 (504)
T PRK14716 75 WREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWIYQAIFAFERE 154 (504)
T ss_pred cCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 46777889999975 3443322 5777764332 1234444555542 21122 23334567777777654 1
Q ss_pred --CCCCEEEEEeCCCCCCCHHHHHHHHHHH
Q 028320 75 --FNSELVCIHDSARPLVLSKDVQKVLMDA 102 (210)
Q Consensus 75 --~~~d~vl~~~~d~Pli~~~~i~~~i~~~ 102 (210)
.+.|+++++|+|. .++|+.++.+...+
T Consensus 155 ~G~~~d~vvi~DAD~-~v~Pd~Lr~~~~~~ 183 (504)
T PRK14716 155 RGIRFAIIVLHDAED-VIHPLELRLYNYLL 183 (504)
T ss_pred cCCCcCEEEEEcCCC-CcCccHHHHHHhhc
Confidence 1348999999976 47888888764433
No 166
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=68.41 E-value=15 Score=27.82 Aligned_cols=69 Identities=17% Similarity=0.309 Sum_probs=40.9
Q ss_pred CCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHH
Q 028320 27 VKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDA 102 (210)
Q Consensus 27 ~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~ 102 (210)
+++|+||=|-++...+++. +++.+. ..+|..-......-+..+..+-+++++.|+|.| -+-|++.|...
T Consensus 2 IkevIVVEGK~D~~~lk~~---~d~~~I-~T~Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~~---GekIRk~i~~~ 70 (174)
T TIGR00334 2 IKEIIVVEGKDDQARIKQA---FDVDVI-ETNGSALKDETINLIKKAQKKQGVIILTDPDFP---GEKIRKKIEQH 70 (174)
T ss_pred CCeEEEEecchHHHHHHHh---cCceEE-EECCCccCHHHHHHHHHHhhcCCEEEEeCCCCc---hHHHHHHHHHH
Confidence 5789998887764334332 333433 334443333344444444445688999998876 67787777653
No 167
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=67.16 E-value=26 Score=26.28 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=38.0
Q ss_pred HHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC-eEEeeec
Q 028320 63 QDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA-AVLGVPA 114 (210)
Q Consensus 63 ~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~-~~~~~~~ 114 (210)
...+..++++ ..+.|++++.|+|. .++++.+++++..+.+.+. .+++.|.
T Consensus 19 v~nL~~~~~~-~a~~d~~~~~DsDi-~v~p~~L~~lv~~l~~p~vglVt~~~~ 69 (175)
T PF13506_consen 19 VNNLAQGLEA-GAKYDYLVISDSDI-RVPPDYLRELVAPLADPGVGLVTGLPR 69 (175)
T ss_pred HHHHHHHHHh-hCCCCEEEEECCCe-eECHHHHHHHHHHHhCCCCcEEEeccc
Confidence 6677788887 23489999999999 8899999999998876443 3444443
No 168
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=65.43 E-value=59 Score=24.84 Aligned_cols=88 Identities=7% Similarity=-0.089 Sum_probs=52.1
Q ss_pred ecCCeehHHHHHHHHhcCCCCCeEEEE-eCCCChHHHHHHHhhcCCcEEEecC--C--c-cHHHHHHHHHHcccCCCCEE
Q 028320 7 PLLGQPIALYSFYTFSRMVEVKEIVVV-CDPSYSDIFEETKEKINVDLKFSLP--G--K-ERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 7 ~i~gkpli~~~i~~~~~~~~~~~ivVv-~~~~~~~~i~~~~~~~~~~v~~~~~--~--~-~~~~si~~~l~~~~~~~d~v 80 (210)
--++.+++.-+++++.+...--+|.+| ++.++ ....+.++++|+++..... - . .....+...++... .|++
T Consensus 7 ~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~-~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~--~D~i 83 (190)
T TIGR00639 7 ISGNGSNLQAIIDACKEGKIPASVVLVISNKPD-AYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHE--VDLV 83 (190)
T ss_pred EcCCChhHHHHHHHHHcCCCCceEEEEEECCcc-chHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcC--CCEE
Confidence 346788899999998765432355554 45433 3445777888887654321 1 1 11234555565554 5664
Q ss_pred EEEeCCCCCCCHHHHHHH
Q 028320 81 CIHDSARPLVLSKDVQKV 98 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~ 98 (210)
+ +.+=+.+++++.++..
T Consensus 84 v-~~~~~~il~~~~l~~~ 100 (190)
T TIGR00639 84 V-LAGFMRILGPTFLSRF 100 (190)
T ss_pred E-EeCcchhCCHHHHhhc
Confidence 4 4466778888877644
No 169
>PRK09028 cystathionine beta-lyase; Provisional
Probab=64.97 E-value=91 Score=26.81 Aligned_cols=92 Identities=10% Similarity=0.119 Sum_probs=56.7
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCCC-h-HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCC
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPSY-S-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSA 86 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~~-~-~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d 86 (210)
+|..-|..++.++.+.+ |+|++..+.-. . ..+...++.+|+++.++.... .+.+..+ +.++...|++-.+.
T Consensus 84 sG~~Ai~~~l~all~~G--D~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~--~e~l~~~---l~~~TklV~lesps 156 (394)
T PRK09028 84 SGAAAISNALLSFLKAG--DHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMI--GEGIREL---IRPNTKVLFLESPG 156 (394)
T ss_pred CHHHHHHHHHHHHhCCC--CEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCC--HHHHHHh---cCcCceEEEEECCC
Confidence 44455666666665554 67666543321 1 122334456777766654322 2334333 33346788888999
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 028320 87 RPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 87 ~Pli~~~~i~~~i~~~~~~~~ 107 (210)
.|.....+++++.+..++.+.
T Consensus 157 NPtg~v~dl~~I~~la~~~g~ 177 (394)
T PRK09028 157 SITMEVQDVPTLSRIAHEHDI 177 (394)
T ss_pred CCCCcHHHHHHHHHHHHHcCC
Confidence 999999999999998887765
No 170
>PRK05967 cystathionine beta-lyase; Provisional
Probab=64.62 E-value=93 Score=26.79 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=58.9
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCCCh--HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCC
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSA 86 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~--~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d 86 (210)
.|..-+..++.++.+.+ |+|++..+.-.- ..+.+.++.+|+.+.++.... .+.+..++ .++...|++-.+.
T Consensus 87 SG~aAi~~~l~all~~G--D~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~--~e~l~~al---~~~TklV~lesPs 159 (395)
T PRK05967 87 SGLAAVTVPFLGFLSPG--DHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEI--GAGIAKLM---RPNTKVVHTEAPG 159 (395)
T ss_pred cHHHHHHHHHHHhcCCC--CEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCC--HHHHHHhc---CcCceEEEEECCC
Confidence 35555666666666554 676665332211 122356678888887774321 23344443 3345678888789
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 028320 87 RPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 87 ~Pli~~~~i~~~i~~~~~~~~ 107 (210)
.|..+..+|+.+.+..++.+.
T Consensus 160 NP~l~v~dl~~I~~la~~~g~ 180 (395)
T PRK05967 160 SNTFEMQDIPAIAEAAHRHGA 180 (395)
T ss_pred CCCCcHHHHHHHHHHHHHhCC
Confidence 999999999999999988775
No 171
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=64.40 E-value=86 Score=26.37 Aligned_cols=103 Identities=10% Similarity=-0.019 Sum_probs=58.5
Q ss_pred ceecCCee-hHHHHHHHHhcCC-C--CCeEEEEeCCCChHHHHHHHhhcCCcEEEecC---Ccc-------------HHH
Q 028320 5 YLPLLGQP-IALYSFYTFSRMV-E--VKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKE-------------RQD 64 (210)
Q Consensus 5 l~~i~gkp-li~~~i~~~~~~~-~--~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~---~~~-------------~~~ 64 (210)
++...++| -+..+++++.+.. . -.+|+|+.+... +...+.++.++..+..+.. +.. -+.
T Consensus 5 lv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~-~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~~ia~ 83 (334)
T cd02514 5 LVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGY-EEVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYYRIAR 83 (334)
T ss_pred EEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCc-hHHHHHHHhhccccEEEEcccccccccCcccccchhhHHHH
Confidence 34456777 6999999998762 2 356888877664 3456666666322322221 110 022
Q ss_pred HHHHHHHccc--CCCCEEEEEeCCCCCCCHHHHHH---HHHHHHhcCCeE
Q 028320 65 SVYSGLQEVD--FNSELVCIHDSARPLVLSKDVQK---VLMDALRVGAAV 109 (210)
Q Consensus 65 si~~~l~~~~--~~~d~vl~~~~d~Pli~~~~i~~---~i~~~~~~~~~~ 109 (210)
..+.|++.+= .+.+.++++..|. .++|+-+.. +++.++....+.
T Consensus 84 hyk~aln~vF~~~~~~~vIILEDDl-~~sPdFf~yf~~~l~~y~~D~~v~ 132 (334)
T cd02514 84 HYKWALTQTFNLFGYSFVIILEDDL-DIAPDFFSYFQATLPLLEEDPSLW 132 (334)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCC-ccCHhHHHHHHHHHHHHhcCCCEE
Confidence 1223555442 1378999999887 678885544 455454443333
No 172
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=63.81 E-value=52 Score=23.59 Aligned_cols=85 Identities=12% Similarity=0.037 Sum_probs=51.5
Q ss_pred cCCeehHHHHHHHHhcCCCCC-eEEEEeCCCChHHHHHHHhhcCCc---EEEe--cCCccHHHHHHHHHHcccCCCCEEE
Q 028320 8 LLGQPIALYSFYTFSRMVEVK-EIVVVCDPSYSDIFEETKEKINVD---LKFS--LPGKERQDSVYSGLQEVDFNSELVC 81 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~~-~ivVv~~~~~~~~i~~~~~~~~~~---v~~~--~~~~~~~~si~~~l~~~~~~~d~vl 81 (210)
.|....|..+++.+.+..... +|+|| ++...+...+++.++... +... ....+...+...|+.... .++++
T Consensus 12 ~n~~~~l~~~l~s~~~q~~~~~eiivv-ddgs~d~t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~ 88 (291)
T COG0463 12 YNEEEYLPEALESLLNQTYKDFEIIVV-DDGSTDGTTEIAIEYGAKDVRVIRLINERNGGLGAARNAGLEYAR--GDYIV 88 (291)
T ss_pred cchhhhHHHHHHHHHhhhhcceEEEEE-eCCCCCChHHHHHHHhhhcceEEEeecccCCChHHHHHhhHHhcc--CCEEE
Confidence 466678888899887654433 55544 444334455666665432 2222 222333555666777765 48999
Q ss_pred EEeCCCCCCCHHHHH
Q 028320 82 IHDSARPLVLSKDVQ 96 (210)
Q Consensus 82 ~~~~d~Pli~~~~i~ 96 (210)
.+++|.- ..+....
T Consensus 89 ~~d~d~~-~~~~~~~ 102 (291)
T COG0463 89 FLDADDQ-HPPELIP 102 (291)
T ss_pred EEccCCC-CCHHHHH
Confidence 9999998 6665555
No 173
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=60.99 E-value=52 Score=23.46 Aligned_cols=43 Identities=14% Similarity=0.089 Sum_probs=25.8
Q ss_pred hHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe
Q 028320 13 IALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 56 (210)
Q Consensus 13 li~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~ 56 (210)
|....++.+..- .++.+++++++.+.....+.++..|..+...
T Consensus 87 l~~d~~~~~~~~-~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~ 129 (149)
T cd06167 87 LAIDALELAYKR-RIDTIVLVSGDSDFVPLVERLRELGKRVIVV 129 (149)
T ss_pred HHHHHHHHhhhc-CCCEEEEEECCccHHHHHHHHHHcCCEEEEE
Confidence 444455555443 4788888888776544445556667665544
No 174
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=56.65 E-value=90 Score=24.05 Aligned_cols=87 Identities=13% Similarity=-0.036 Sum_probs=51.5
Q ss_pred ecCCeehHHHHHHHHhcCCCCCeEEE-EeCCCChHHHHHHHhhcCCcEEEecCC--ccH---HHHHHHHHHcccCCCCEE
Q 028320 7 PLLGQPIALYSFYTFSRMVEVKEIVV-VCDPSYSDIFEETKEKINVDLKFSLPG--KER---QDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 7 ~i~gkpli~~~i~~~~~~~~~~~ivV-v~~~~~~~~i~~~~~~~~~~v~~~~~~--~~~---~~si~~~l~~~~~~~d~v 80 (210)
--++.+++.-+++++.+....-.|++ +++.+. ....+.+++.|+++...... .++ ...+...|+..+ .|++
T Consensus 8 ~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~-~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~--~D~i 84 (200)
T PRK05647 8 ASGNGSNLQAIIDACAAGQLPAEIVAVISDRPD-AYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQ--PDLV 84 (200)
T ss_pred EcCCChhHHHHHHHHHcCCCCcEEEEEEecCcc-chHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhC--cCEE
Confidence 34678888999999876643345554 455443 34567888888876543211 111 233455565544 5664
Q ss_pred EEEeCCCCCCCHHHHHH
Q 028320 81 CIHDSARPLVLSKDVQK 97 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~ 97 (210)
+ +.+=+.++.++.++.
T Consensus 85 v-~~~~~~ii~~~~l~~ 100 (200)
T PRK05647 85 V-LAGFMRILGPTFVSA 100 (200)
T ss_pred E-hHHhhhhCCHHHHhh
Confidence 4 446667888877753
No 175
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=56.42 E-value=53 Score=24.86 Aligned_cols=33 Identities=12% Similarity=0.005 Sum_probs=19.2
Q ss_pred CCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC
Q 028320 26 EVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP 58 (210)
Q Consensus 26 ~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~ 58 (210)
.+|.+++++++.+...+.+.+++.|..+.++..
T Consensus 110 ~~D~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~ 142 (181)
T COG1432 110 NVDTIVLFSGDGDFIPLVEAARDKGKRVEVAGI 142 (181)
T ss_pred CCCEEEEEcCCccHHHHHHHHHHcCCEEEEEec
Confidence 567777777776654444555555655554433
No 176
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=55.48 E-value=65 Score=27.60 Aligned_cols=83 Identities=14% Similarity=0.245 Sum_probs=44.6
Q ss_pred cceecCCeeh---HHHHHHHHhcCCCCCeEEEEeCCCCh-HHHHHHHhhcCCc-EEE----ecCCccHHHH---HHHHHH
Q 028320 4 QYLPLLGQPI---ALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVD-LKF----SLPGKERQDS---VYSGLQ 71 (210)
Q Consensus 4 ~l~~i~gkpl---i~~~i~~~~~~~~~~~ivVv~~~~~~-~~i~~~~~~~~~~-v~~----~~~~~~~~~s---i~~~l~ 71 (210)
.+.-+|-||= ++-++.++.+.+.++.++|+|+.+.- +........++.+ ..+ ...+.+..+. +..+++
T Consensus 6 v~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~ 85 (383)
T COG0381 6 VLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLS 85 (383)
T ss_pred EEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHH
Confidence 3333444542 35577888888889999999998852 2223333444433 222 2123333333 344443
Q ss_pred cc--cCCCCEEEEEeCCC
Q 028320 72 EV--DFNSELVCIHDSAR 87 (210)
Q Consensus 72 ~~--~~~~d~vl~~~~d~ 87 (210)
.+ +.+-|.|+|| ||.
T Consensus 86 ~vl~~~kPD~VlVh-GDT 102 (383)
T COG0381 86 KVLEEEKPDLVLVH-GDT 102 (383)
T ss_pred HHHHhhCCCEEEEe-CCc
Confidence 33 1245777776 663
No 177
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=53.68 E-value=1.3e+02 Score=25.59 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=54.5
Q ss_pred cCCeehHHHHHHHHhcCCCCCeEEEEeCCCC--hHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeC
Q 028320 8 LLGQPIALYSFYTFSRMVEVKEIVVVCDPSY--SDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDS 85 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~--~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~ 85 (210)
-+|...|..++.++.+.+ |+|++....-. ...+...++.+++.+.++... ..+.+..++ .++...|++..+
T Consensus 83 ~sG~~Ai~~~l~all~~G--d~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~--d~e~l~~~i---~~~tklV~ie~p 155 (388)
T PRK07811 83 SSGMAATDCLLRAVLRPG--DHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLS--DLDAVRAAI---TPRTKLIWVETP 155 (388)
T ss_pred CCHHHHHHHHHHHHhCCC--CEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCC--CHHHHHHhc---CcCCeEEEEECC
Confidence 355666777777775443 66655432221 011222333456665555431 134444333 334567888889
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 028320 86 ARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 86 d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
..|..+...++++.+.+++.+.
T Consensus 156 ~NPtg~~~dl~~I~~la~~~gi 177 (388)
T PRK07811 156 TNPLLSITDIAALAELAHDAGA 177 (388)
T ss_pred CCCcceecCHHHHHHHHHHcCC
Confidence 9999999999999888877654
No 178
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=52.39 E-value=53 Score=24.73 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=35.4
Q ss_pred HHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCC
Q 028320 19 YTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPL 89 (210)
Q Consensus 19 ~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pl 89 (210)
..+...+ =.++|+.+..+ ..+..+++.+|++..+-. .+....++..|++..+-+.+-|+++ ||+=|
T Consensus 56 ~e~k~~g--i~v~vvSNn~e-~RV~~~~~~l~v~fi~~A-~KP~~~~fr~Al~~m~l~~~~vvmV-GDqL~ 121 (175)
T COG2179 56 AELKEAG--IKVVVVSNNKE-SRVARAAEKLGVPFIYRA-KKPFGRAFRRALKEMNLPPEEVVMV-GDQLF 121 (175)
T ss_pred HHHHhcC--CEEEEEeCCCH-HHHHhhhhhcCCceeecc-cCccHHHHHHHHHHcCCChhHEEEE-cchhh
Confidence 3344443 24555545433 567777777775543322 2444667888888876333444433 55533
No 179
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=52.37 E-value=1.4e+02 Score=25.12 Aligned_cols=86 Identities=10% Similarity=0.098 Sum_probs=54.8
Q ss_pred ehHHHHHHHHhcCCCCCeEEEEeCCC----ChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccC-CCCEEEEEeCC
Q 028320 12 PIALYSFYTFSRMVEVKEIVVVCDPS----YSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF-NSELVCIHDSA 86 (210)
Q Consensus 12 pli~~~i~~~~~~~~~~~ivVv~~~~----~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~-~~d~vl~~~~d 86 (210)
+=|.-....+++.+ .+++++.++- .+++++.|.++.|+++.-...|.+..+.++.|+++... ..|+|++=.+-
T Consensus 154 TTIaKLA~~l~~~g--~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAG 231 (340)
T COG0552 154 TTIAKLAKYLKQQG--KSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAG 231 (340)
T ss_pred hHHHHHHHHHHHCC--CeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcc
Confidence 44555566666554 5777777764 34566777777776543323355666677888888753 57888876666
Q ss_pred CCCCCHHHHHHHH
Q 028320 87 RPLVLSKDVQKVL 99 (210)
Q Consensus 87 ~Pli~~~~i~~~i 99 (210)
|=--..+.++.+=
T Consensus 232 RLhnk~nLM~EL~ 244 (340)
T COG0552 232 RLHNKKNLMDELK 244 (340)
T ss_pred cccCchhHHHHHH
Confidence 6556666666663
No 180
>PRK08114 cystathionine beta-lyase; Provisional
Probab=51.27 E-value=1.6e+02 Score=25.36 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=57.0
Q ss_pred CeehHHHHHHHHhcCCCCCeEEEEeCCC-C-hHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCC
Q 028320 10 GQPIALYSFYTFSRMVEVKEIVVVCDPS-Y-SDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSAR 87 (210)
Q Consensus 10 gkpli~~~i~~~~~~~~~~~ivVv~~~~-~-~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~ 87 (210)
|---|..++.++.+.+ |+|++..... . ...+.+.++++|+++.++.... .+.+..++ .++...|++-.+..
T Consensus 86 GmaAi~~~~~~ll~~G--D~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d--~~~l~~~l---~~~TrlV~~EtpsN 158 (395)
T PRK08114 86 GAAAVANAILAFVEQG--DHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLI--GADIAKLI---QPNTKVVFLESPGS 158 (395)
T ss_pred HHHHHHHHHHHHcCCC--CEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCC--HHHHHHhc---CCCceEEEEECCCC
Confidence 3344555666665544 6766543221 1 1234455678898888876432 34455444 33457888888999
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 028320 88 PLVLSKDVQKVLMDALRVG 106 (210)
Q Consensus 88 Pli~~~~i~~~i~~~~~~~ 106 (210)
|.....+|+.+.+..++.+
T Consensus 159 p~~~v~DI~~Ia~ia~~~g 177 (395)
T PRK08114 159 ITMEVHDVPAIVAAVRSVN 177 (395)
T ss_pred CCCEeecHHHHHHHHHHhC
Confidence 9999899999988887763
No 181
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=50.10 E-value=1.6e+02 Score=24.95 Aligned_cols=88 Identities=9% Similarity=0.164 Sum_probs=53.6
Q ss_pred CeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCc--cHHHHHHHHHHcccCCCCEEEEEeCCC
Q 028320 10 GQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGK--ERQDSVYSGLQEVDFNSELVCIHDSAR 87 (210)
Q Consensus 10 gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~--~~~~si~~~l~~~~~~~d~vl~~~~d~ 87 (210)
.-.+|+..++++...+ |++++....-. .-.-.++..|.++..+.-.. ...+++..++.. +.+.|+++.+..
T Consensus 84 sde~i~~l~~~~~~~g--d~vl~~~Ptf~--~Y~~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~---~~~lv~i~nPNN 156 (356)
T COG0079 84 SDELIELLVRAFVEPG--DTVLIPEPTFS--MYEIAAQLAGAEVVKVPLKEFRLDLDAILAAIRD---KTKLVFLCNPNN 156 (356)
T ss_pred hHHHHHHHHHHhhcCC--CEEEEcCCChH--HHHHHHHhcCCeEEEecccccccCHHHHHHhhhc---CCCEEEEeCCCC
Confidence 3456667777666543 56666544432 23344555676655443321 223445444433 468899998888
Q ss_pred C---CCCHHHHHHHHHHHHh
Q 028320 88 P---LVLSKDVQKVLMDALR 104 (210)
Q Consensus 88 P---li~~~~i~~~i~~~~~ 104 (210)
| +++.+.|+.+++.+..
T Consensus 157 PTG~~~~~~~l~~l~~~~~~ 176 (356)
T COG0079 157 PTGTLLPREELRALLEALPE 176 (356)
T ss_pred CCCCCCCHHHHHHHHHhCCC
Confidence 8 6899999999987755
No 182
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=49.93 E-value=1.2e+02 Score=24.06 Aligned_cols=37 Identities=5% Similarity=0.017 Sum_probs=23.0
Q ss_pred HHHHHHhcCCCCCeEEEEeCCCCh--HHHHHHHhhcCCcE
Q 028320 16 YSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKINVDL 53 (210)
Q Consensus 16 ~~i~~~~~~~~~~~ivVv~~~~~~--~~i~~~~~~~~~~v 53 (210)
-+++++...+ +.+|.|+|++... +.+.+...+.|++|
T Consensus 110 A~~~AL~alg-~~RIalvTPY~~~v~~~~~~~l~~~G~eV 148 (239)
T TIGR02990 110 AAVDGLAALG-VRRISLLTPYTPETSRPMAQYFAVRGFEI 148 (239)
T ss_pred HHHHHHHHcC-CCEEEEECCCcHHHHHHHHHHHHhCCcEE
Confidence 3456666664 7889998888642 34455555566554
No 183
>PRK04017 hypothetical protein; Provisional
Probab=49.72 E-value=89 Score=22.49 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCC--cEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCC
Q 028320 14 ALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV--DLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL 91 (210)
Q Consensus 14 i~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~--~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~ 91 (210)
|...++.+.+...-..++||=|.++. +.++++|+ .+..+.| ..... ...-+ +....+.+++.|+|.|
T Consensus 9 ~~e~i~~L~e~s~~g~vIVVEGk~D~----~~L~~lGv~~~iI~t~g-~~~~~-~~e~i--a~~~r~VIILTD~D~~--- 77 (132)
T PRK04017 9 FEEIIEELKEFSEAGAPIIVEGKRDV----ESLRKLGVEGEIIKVSR-TPLAE-IAELI--ASRGKEVIILTDFDRK--- 77 (132)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCccHH----HHHHHcCCCccEEEECC-eecch-HHHHH--HhcCCeEEEEECCCcc---
Confidence 45567777665544567777777653 33445554 3333333 22211 11111 1223477888887765
Q ss_pred HHHHHHHHHH
Q 028320 92 SKDVQKVLMD 101 (210)
Q Consensus 92 ~~~i~~~i~~ 101 (210)
-+-|++.+..
T Consensus 78 GekIr~~l~~ 87 (132)
T PRK04017 78 GEELAKKLSE 87 (132)
T ss_pred hHHHHHHHHH
Confidence 4555444443
No 184
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=48.17 E-value=1e+02 Score=25.93 Aligned_cols=77 Identities=12% Similarity=0.156 Sum_probs=40.2
Q ss_pred HHhcCCCCCeEEEEeCCCCh-HHHHHHHhhcCC-cEEEec--CCccHHHHHHHHHHccc-----CCCCEEEEEeCCCCCC
Q 028320 20 TFSRMVEVKEIVVVCDPSYS-DIFEETKEKINV-DLKFSL--PGKERQDSVYSGLQEVD-----FNSELVCIHDSARPLV 90 (210)
Q Consensus 20 ~~~~~~~~~~ivVv~~~~~~-~~i~~~~~~~~~-~v~~~~--~~~~~~~si~~~l~~~~-----~~~d~vl~~~~d~Pli 90 (210)
++.+.+.++-.+|+||.+.. .+-....++++. .+.+.. ++.+...++..++..+. .+-|+|+++ ||+
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~-GD~--- 77 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFFEGFGIPKPDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVL-GDR--- 77 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHHHHTT--SEEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEE-TTS---
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHHhhCCCCCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEE-cCC---
Confidence 56677778999999999832 222334446665 444432 22333444545554442 246787755 774
Q ss_pred CHHHHHHHHHH
Q 028320 91 LSKDVQKVLMD 101 (210)
Q Consensus 91 ~~~~i~~~i~~ 101 (210)
-+.+...+.+
T Consensus 78 -~~~la~alaA 87 (346)
T PF02350_consen 78 -NEALAAALAA 87 (346)
T ss_dssp -HHHHHHHHHH
T ss_pred -chHHHHHHHH
Confidence 4444444433
No 185
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=46.14 E-value=1.1e+02 Score=28.72 Aligned_cols=94 Identities=10% Similarity=0.046 Sum_probs=57.1
Q ss_pred cCCeehHHHHHHHHh-cCCCCC-eEEEEeCCC--C-hHHHHHHHhhcC-CcEEEe-c-CCccHHHHHHHHHHccc-----
Q 028320 8 LLGQPIALYSFYTFS-RMVEVK-EIVVVCDPS--Y-SDIFEETKEKIN-VDLKFS-L-PGKERQDSVYSGLQEVD----- 74 (210)
Q Consensus 8 i~gkpli~~~i~~~~-~~~~~~-~ivVv~~~~--~-~~~i~~~~~~~~-~~v~~~-~-~~~~~~~si~~~l~~~~----- 74 (210)
.|....|..+++.+. ...+-+ +|+|+++.+ . .+.+++++++++ ..+... . |..+...++-.+++.+.
T Consensus 72 ~nE~~vi~~~i~~ll~~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aLN~~l~~~~~~e~~ 151 (727)
T PRK11234 72 WNETGVIGNMAELAATTLDYENYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCLNNVLDAITQFERS 151 (727)
T ss_pred CcchhhHHHHHHHHHHhCCCCCeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhhhcc
Confidence 367778889999764 333322 677775322 2 234556666665 222222 2 23445788888888772
Q ss_pred --CCCCEEEEEeCCCCCCCHHHHHHHHHHHH
Q 028320 75 --FNSELVCIHDSARPLVLSKDVQKVLMDAL 103 (210)
Q Consensus 75 --~~~d~vl~~~~d~Pli~~~~i~~~i~~~~ 103 (210)
...+.++++|+|. .++|+.++ ++..+.
T Consensus 152 ~~~~~~vvvi~DAD~-~v~pd~L~-~~~~l~ 180 (727)
T PRK11234 152 ANFAFAGFILHDAED-VISPMELR-LFNYLV 180 (727)
T ss_pred cCCcccEEEEEcCCC-CCChhHHH-HHHhhc
Confidence 1346788899987 78999998 444443
No 186
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=45.75 E-value=1.4e+02 Score=23.23 Aligned_cols=29 Identities=7% Similarity=0.151 Sum_probs=24.9
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALRV 105 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~ 105 (210)
+.|+++++|+|.-+ +++.+..+++.+...
T Consensus 73 ~~e~i~~~DaD~~~-~~~~l~~l~~~~~~~ 101 (244)
T cd04190 73 DPEFILLVDADTKF-DPDSIVQLYKAMDKD 101 (244)
T ss_pred CCCEEEEECCCCcC-CHhHHHHHHHHHHhC
Confidence 47999999999976 999999999888543
No 187
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=45.55 E-value=9.4 Score=28.94 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=15.5
Q ss_pred CCCccccChhhHHHHHHH
Q 028320 185 YTNIKVTTPDDLLIAERI 202 (210)
Q Consensus 185 ~~~~dIdt~~Dl~~a~~~ 202 (210)
..++.|||++|++.+|.+
T Consensus 166 ~~~~nvnt~~d~~~~~~~ 183 (183)
T TIGR00454 166 ELIVNINTKDDLKLAEML 183 (183)
T ss_pred cceEecCCHHHHHHhhcC
Confidence 378999999999999853
No 188
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=45.51 E-value=65 Score=22.65 Aligned_cols=42 Identities=12% Similarity=-0.084 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe
Q 028320 14 ALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS 56 (210)
Q Consensus 14 i~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~ 56 (210)
...+++.+.+.. .+.+++++++.+.....+.+++.|.++..+
T Consensus 84 ~~d~~~~~~~~~-~d~ivLvSgD~Df~~~v~~l~~~g~~V~v~ 125 (146)
T PF01936_consen 84 AVDILELAYENP-PDTIVLVSGDSDFAPLVRKLRERGKRVIVV 125 (146)
T ss_dssp HHHHHHHG--GG--SEEEEE---GGGHHHHHHHHHH--EEEEE
T ss_pred HHHHHHHhhccC-CCEEEEEECcHHHHHHHHHHHHcCCEEEEE
Confidence 334444443333 488888888876544555566667665544
No 189
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=44.77 E-value=1.5e+02 Score=23.02 Aligned_cols=87 Identities=11% Similarity=0.005 Sum_probs=55.4
Q ss_pred CCeehHHHHHHHHhcCCCC-CeEEEEeCCCChHHHHHHHhhcCCcEEEec--CCccH---HHHHHHHHHcccCCCCEEEE
Q 028320 9 LGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKER---QDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~--~~~~~---~~si~~~l~~~~~~~d~vl~ 82 (210)
|+-+-++-.++++..- .+ -+|..|..+....+..+.++++|++..+.. ...++ -..+...|+..+ .|. ++
T Consensus 9 G~GSNlqaiida~~~~-~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~--~dl-vv 84 (200)
T COG0299 9 GNGSNLQAIIDAIKGG-KLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYG--PDL-VV 84 (200)
T ss_pred CCcccHHHHHHHHhcC-CCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcC--CCE-EE
Confidence 5566788889988743 33 355555555433566778888998754433 22222 344566666654 455 66
Q ss_pred EeCCCCCCCHHHHHHHH
Q 028320 83 HDSARPLVLSKDVQKVL 99 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~~i 99 (210)
+.|=|=.++++.++++-
T Consensus 85 LAGyMrIL~~~fl~~~~ 101 (200)
T COG0299 85 LAGYMRILGPEFLSRFE 101 (200)
T ss_pred EcchHHHcCHHHHHHhh
Confidence 88999999999887764
No 190
>PRK05968 hypothetical protein; Provisional
Probab=43.98 E-value=2e+02 Score=24.45 Aligned_cols=92 Identities=17% Similarity=0.199 Sum_probs=58.2
Q ss_pred cCCeehHHHHHHHHhcCCCCCeEEEEeCCCC--hHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeC
Q 028320 8 LLGQPIALYSFYTFSRMVEVKEIVVVCDPSY--SDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDS 85 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~--~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~ 85 (210)
-.|..-+..++.++.+.+ |+|++....-. ...+...++.+|+++.++.... .+.+..++ + +...|++..+
T Consensus 85 ~sG~~Ai~~al~al~~~G--d~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d--~~~l~~~i---~-~tklV~ie~p 156 (389)
T PRK05968 85 ASGMAAISSTVLSFVEPG--DRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRD--EEAVAKAL---P-GAKLLYLESP 156 (389)
T ss_pred CCHHHHHHHHHHHHhCCC--CEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCC--HHHHHHhc---c-cCCEEEEECC
Confidence 355555666666665443 67666543221 0123345666788877775432 34454443 2 3578888889
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 028320 86 ARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 86 d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
..|.+....++++.+..++++.
T Consensus 157 t~~~~~~~dl~~i~~la~~~gi 178 (389)
T PRK05968 157 TSWVFELQDVAALAALAKRHGV 178 (389)
T ss_pred CCCCCcHHHHHHHHHHHHHcCC
Confidence 9999999999999998887664
No 191
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=42.09 E-value=95 Score=22.33 Aligned_cols=57 Identities=7% Similarity=0.034 Sum_probs=32.1
Q ss_pred HHHHHHhhcCCcEEE---ecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHH
Q 028320 41 IFEETKEKINVDLKF---SLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMD 101 (210)
Q Consensus 41 ~i~~~~~~~~~~v~~---~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~ 101 (210)
.+.+.++++|.++.. +.+. .+.+..+++.+...+|.+++.-+..+ -..+...++++.
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~Dd---~~~i~~~l~~~~~~~DliIttGG~g~-g~~D~t~~ai~~ 90 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPDD---PEEIREILRKAVDEADVVLTTGGTGV-GPRDVTPEALEE 90 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCCC---HHHHHHHHHHHHhCCCEEEECCCCCC-CCCccHHHHHHH
Confidence 567777788876543 3332 35566666555335788777755444 334444444443
No 192
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=41.61 E-value=93 Score=19.86 Aligned_cols=56 Identities=7% Similarity=0.073 Sum_probs=32.1
Q ss_pred EEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCC
Q 028320 31 VVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARP 88 (210)
Q Consensus 31 vVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~P 88 (210)
+++..+.+=+.+..+++.+|....--........+++..++.+++. .-+.+.+|=|
T Consensus 14 ~lvS~s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk~G--~~~~itpDGP 69 (74)
T PF04028_consen 14 ALVSRSRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALKEG--YSIAITPDGP 69 (74)
T ss_pred EEEccCcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHHCC--CeEEEeCCCC
Confidence 3333343325677888888865432222333367788888888733 3344556666
No 193
>PRK07050 cystathionine beta-lyase; Provisional
Probab=40.77 E-value=2.3e+02 Score=24.19 Aligned_cols=93 Identities=11% Similarity=0.114 Sum_probs=57.4
Q ss_pred cCCeehHHHHHHHHhcCCCCCeEEEEeCCCChH--HHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeC
Q 028320 8 LLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD--IFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDS 85 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~--~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~ 85 (210)
-+|..-+..++.++.+.+ |+|++....-.-. .....+..+|+.+.++.... ...+..+ +.++...|++..+
T Consensus 87 ~sgt~Ai~~~l~al~~~G--D~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~--~~~l~~~---i~~~tklV~le~p 159 (394)
T PRK07050 87 PSGLAAISLVYFGLVKAG--DDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLI--GAGIADL---IQPNTRLIWLEAP 159 (394)
T ss_pred ccHHHHHHHHHHHHhCCC--CEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCC--HHHHHHh---cCCCCeEEEEECC
Confidence 345666677777775543 6666654333211 12234566787777664321 2334333 3334577888889
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 028320 86 ARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 86 d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
..|..+...++.+.+..++.+.
T Consensus 160 ~Np~~~~~di~~I~~ia~~~gi 181 (394)
T PRK07050 160 GSVTMEVPDVPAITAAARARGV 181 (394)
T ss_pred CCCCccHhhHHHHHHHHHHcCC
Confidence 9999999999999988877654
No 194
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=40.38 E-value=1.5e+02 Score=25.46 Aligned_cols=73 Identities=8% Similarity=0.120 Sum_probs=49.2
Q ss_pred CCeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccH-HHHHHHHHHccc-----CCCCEEEEEeCCCCCCCHHHHHHHH
Q 028320 27 VKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKER-QDSVYSGLQEVD-----FNSELVCIHDSARPLVLSKDVQKVL 99 (210)
Q Consensus 27 ~~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~-~~si~~~l~~~~-----~~~d~vl~~~~d~Pli~~~~i~~~i 99 (210)
..+.+||++.-+. .-+...++..|+.|..+.-+.-+ ..++..|++... ...|+++...|..--++.+.+..+=
T Consensus 208 aGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TGnkdVi~~eh~~~Mk 287 (420)
T COG0499 208 AGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATGNKDVIRKEHFEKMK 287 (420)
T ss_pred cCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccCCcCccCHHHHHhcc
Confidence 4689999999875 33445556677777665433322 444455554442 2468999999999999999987763
No 195
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=39.97 E-value=76 Score=25.72 Aligned_cols=57 Identities=11% Similarity=0.041 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCCC--eEEEEeCCCC--hHHHHHHHhhcCCcEEEecCCccHHHHHHHHH
Q 028320 14 ALYSFYTFSRMVEVK--EIVVVCDPSY--SDIFEETKEKINVDLKFSLPGKERQDSVYSGL 70 (210)
Q Consensus 14 i~~~i~~~~~~~~~~--~ivVv~~~~~--~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l 70 (210)
+..+++.+.+...+. .+.+.++++. ...+++.++++..++.=.+|..+...++....
T Consensus 162 m~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~y 222 (280)
T KOG2792|consen 162 MSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKY 222 (280)
T ss_pred HHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHh
Confidence 445666665544322 6888888853 24567777777655443455444444444433
No 196
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=39.78 E-value=2.1e+02 Score=24.60 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=53.9
Q ss_pred cCCeehHHHHHHHHhcCCCCCeEEEEeCCC-----ChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccC-CCCE
Q 028320 8 LLGQPIALYSFYTFSRMVEVKEIVVVCDPS-----YSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDF-NSEL 79 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~~~ivVv~~~~-----~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~-~~d~ 79 (210)
+.|.=-+.+.-+.+...+ ..++.|||+.. ..+.+.+.++..++.+.+... +....+.+..|.+.++. ++|.
T Consensus 11 ~fG~g~l~~l~~~~~~~g-~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~ 89 (377)
T COG1454 11 LFGRGSLKELGEEVKRLG-AKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDT 89 (377)
T ss_pred EecCChHHHHHHHHHhcC-CCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCE
Confidence 345556677777666554 68999999985 224455555555544443221 34446777778877753 5788
Q ss_pred EEEEeCCCCCCCHHHH
Q 028320 80 VCIHDSARPLVLSKDV 95 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i 95 (210)
|+-+-|-+|+=....+
T Consensus 90 iIalGGGS~~D~AK~i 105 (377)
T COG1454 90 IIALGGGSVIDAAKAI 105 (377)
T ss_pred EEEeCCccHHHHHHHH
Confidence 8888887665333333
No 197
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=39.21 E-value=66 Score=26.03 Aligned_cols=86 Identities=13% Similarity=0.053 Sum_probs=39.9
Q ss_pred HHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec--------CCccH----HHHHHHHHHcccCCCCEEEEEe
Q 028320 17 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--------PGKER----QDSVYSGLQEVDFNSELVCIHD 84 (210)
Q Consensus 17 ~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~--------~~~~~----~~si~~~l~~~~~~~d~vl~~~ 84 (210)
.+...++.+ .+|..+|.++. ....++...|+++.++- |..+. .+.+.+=.+++..-...-+ +-
T Consensus 7 ~l~~~k~~g--~ki~~lTaYD~--~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~-vv 81 (261)
T PF02548_consen 7 DLRKMKQKG--EKIVMLTAYDY--PSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAF-VV 81 (261)
T ss_dssp HHHHHHHHT----EEEEE--SH--HHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSE-EE
T ss_pred HHHHHHhCC--CcEEEEecccH--HHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCce-EE
Confidence 344455444 68999999985 46778888888876652 21211 2333322233321111112 23
Q ss_pred CCCCCCCH-----HHHHHHHHHHHhcCC
Q 028320 85 SARPLVLS-----KDVQKVLMDALRVGA 107 (210)
Q Consensus 85 ~d~Pli~~-----~~i~~~i~~~~~~~~ 107 (210)
+|+||.+- +.+++....+++.|+
T Consensus 82 ~DmPf~sy~~s~e~av~nA~rl~ke~Ga 109 (261)
T PF02548_consen 82 ADMPFGSYQASPEQAVRNAGRLMKEAGA 109 (261)
T ss_dssp EE--TTSSTSSHHHHHHHHHHHHHTTT-
T ss_pred ecCCcccccCCHHHHHHHHHHHHHhcCC
Confidence 89999976 444555555565665
No 198
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.57 E-value=55 Score=23.35 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=30.6
Q ss_pred CCeEEEEeCCCCh-HHHHHHHhhcCCc-EEE-----ecCCccHHHHHHHHHHcccC-CCCEEE
Q 028320 27 VKEIVVVCDPSYS-DIFEETKEKINVD-LKF-----SLPGKERQDSVYSGLQEVDF-NSELVC 81 (210)
Q Consensus 27 ~~~ivVv~~~~~~-~~i~~~~~~~~~~-v~~-----~~~~~~~~~si~~~l~~~~~-~~d~vl 81 (210)
.++++|+++.+.- +.+.+++.+++.. .+. -..+.+++.++..||.+++- +.|.|+
T Consensus 36 A~r~vV~t~N~~K~~aindvlrrf~l~Eaeml~~~T~~ADlTrmPA~tKalmaldis~ADlvI 98 (156)
T COG4019 36 AKRIVVATNNQKKFKAINDVLRRFCLAEAEMLDIDTRFADLTRMPALTKALMALDISKADLVI 98 (156)
T ss_pred cceEEEecCCHHHHHHHHHHHHHhccchHHHhcCccchhhcccChHHHHHHHhccccCCcEEE
Confidence 4688888887642 4556666665521 111 11134556777777777752 345544
No 199
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=38.01 E-value=2.2e+02 Score=23.67 Aligned_cols=91 Identities=9% Similarity=0.059 Sum_probs=53.0
Q ss_pred eecCCeehHHHHHHHHhcCCCCCeEEEEeCCCC-hHHHHHHHhhcC-CcEEEecCCccHHHHHHHHHHcccCCCCEEEEE
Q 028320 6 LPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSY-SDIFEETKEKIN-VDLKFSLPGKERQDSVYSGLQEVDFNSELVCIH 83 (210)
Q Consensus 6 ~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~-~~~i~~~~~~~~-~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~ 83 (210)
.+|.+|+-=....+.. ..+|.++| ++.+| +-.+.+++.+.. -++.++.+ -...+....|++.++.-.|-|+ +
T Consensus 101 V~I~~ke~EefA~~~~---~~~d~~i~-~g~DWkiIPLENlIA~l~~e~~kliA~-V~saeEA~vA~eTLE~GaDgVl-l 174 (376)
T COG1465 101 VEIRSKEDEEFAAERA---KVADYVIV-VGEDWKIIPLENLIADLQHEKVKLIAG-VKSAEEARVALETLEKGADGVL-L 174 (376)
T ss_pred EEEcCccchHHHHhhc---cccceEEE-EcCcceEeeHHHHHHHhhccceEEEEE-eccHHHHHHHHHHHhccCceEE-e
Confidence 3444444433333332 23355555 45665 234566666543 34555555 2234567788888876567766 5
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcC
Q 028320 84 DSARPLVLSKDVQKVLMDALRVG 106 (210)
Q Consensus 84 ~~d~Pli~~~~i~~~i~~~~~~~ 106 (210)
+++ +++.|++..+...+..
T Consensus 175 ~~~----d~~eIk~~~~~~~e~~ 193 (376)
T COG1465 175 DSD----DPEEIKKTAEVVEEAE 193 (376)
T ss_pred CCC----CHHHHHHHHHHHHHhc
Confidence 555 8899999988776543
No 200
>PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain
Probab=37.87 E-value=2e+02 Score=22.59 Aligned_cols=66 Identities=11% Similarity=0.040 Sum_probs=40.0
Q ss_pred CCCCeEEEEeCCCChHHHHHHHhhcC--Cc----------------------------EEEecCCccHHHHHHHHHHccc
Q 028320 25 VEVKEIVVVCDPSYSDIFEETKEKIN--VD----------------------------LKFSLPGKERQDSVYSGLQEVD 74 (210)
Q Consensus 25 ~~~~~ivVv~~~~~~~~i~~~~~~~~--~~----------------------------v~~~~~~~~~~~si~~~l~~~~ 74 (210)
..+|.+|.++.+-++....++++..- -. ..+..|+.+-..++..|...+.
T Consensus 50 ~~~d~~VfaS~~Gel~~t~~ll~~l~~~~~lSPT~Fs~SVHNA~aG~~sI~~~~~~~~tal~a~~~sf~~aLleA~~~l~ 129 (218)
T PF13723_consen 50 EQPDAIVFASRHGELERTFKLLEALAEEEELSPTAFSQSVHNAAAGYWSIATKNTGPNTALAAGEDSFEAALLEAAAQLA 129 (218)
T ss_pred CCCCcEEEEeCCCcHHHHHHHHHHHHhCCCcCccchhhhhhhHHHHHHHHHhCCCCceEEEecCcchHHHHHHHHHHHHH
Confidence 45778999988887655555554321 00 1123344444556777777765
Q ss_pred CCCCEEEEEeCCCCCC
Q 028320 75 FNSELVCIHDSARPLV 90 (210)
Q Consensus 75 ~~~d~vl~~~~d~Pli 90 (210)
...+.||++..|.|+-
T Consensus 130 ~~~~~VLlv~~De~~p 145 (218)
T PF13723_consen 130 EGAEPVLLVCYDEPLP 145 (218)
T ss_pred cCCCCEEEEEeCCCCC
Confidence 4456788888888773
No 201
>PRK07582 cystathionine gamma-lyase; Validated
Probab=37.83 E-value=2.5e+02 Score=23.67 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=54.0
Q ss_pred ecCCeehHHHHHHHHhcCCCCCeEEEEeCCCCh--HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEe
Q 028320 7 PLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHD 84 (210)
Q Consensus 7 ~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~--~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~ 84 (210)
.-+|..-|..++.++...+ |+|++..+...- ......++.+|+++.++..... .. ... ++.+.|++..
T Consensus 71 ~~sG~~Ai~~~l~all~~G--d~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~-~~------~~~-~~t~lV~le~ 140 (366)
T PRK07582 71 FPSGMAAITAVLRALLRPG--DTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGM-AE------AAL-AGADLVLAET 140 (366)
T ss_pred ECCHHHHHHHHHHHhcCCC--CEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCCh-HH------Hhc-cCceEEEEEC
Confidence 3355556666776664433 677765433211 1112234557777777654321 11 112 2456788888
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC
Q 028320 85 SARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 85 ~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
+..|......++++.+.+++.+.
T Consensus 141 p~NPtg~v~di~~I~~~a~~~g~ 163 (366)
T PRK07582 141 PSNPGLDVCDLAALAAAAHAAGA 163 (366)
T ss_pred CCCCCCCccCHHHHHHHHHHcCC
Confidence 99998888889999988877664
No 202
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=37.62 E-value=1.6e+02 Score=21.34 Aligned_cols=55 Identities=7% Similarity=0.088 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHccc
Q 028320 16 YSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVD 74 (210)
Q Consensus 16 ~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~ 74 (210)
.+++.+++.+ -++.|+|+... ..+...++.+|.... ..+..+....+..+++.+.
T Consensus 35 ~~i~~Lk~~G--~~i~IvTn~~~-~~~~~~l~~~gi~~~-~~~~~~k~~~~~~~~~~~~ 89 (154)
T TIGR01670 35 YGIRCALKSG--IEVAIITGRKA-KLVEDRCKTLGITHL-YQGQSNKLIAFSDILEKLA 89 (154)
T ss_pred HHHHHHHHCC--CEEEEEECCCC-HHHHHHHHHcCCCEE-EecccchHHHHHHHHHHcC
Confidence 3688887665 47777787765 456677777776532 3333333556666666654
No 203
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=37.52 E-value=1.7e+02 Score=21.82 Aligned_cols=55 Identities=7% Similarity=0.142 Sum_probs=32.4
Q ss_pred HHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHccc
Q 028320 16 YSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVD 74 (210)
Q Consensus 16 ~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~ 74 (210)
+.++.+.+.+ -++.|+|+... ..+...++.++....+ .+..+....+..+++.+.
T Consensus 55 ~~i~~L~~~G--i~v~I~T~~~~-~~v~~~l~~lgl~~~f-~g~~~k~~~l~~~~~~~g 109 (183)
T PRK09484 55 YGIRCLLTSG--IEVAIITGRKS-KLVEDRMTTLGITHLY-QGQSNKLIAFSDLLEKLA 109 (183)
T ss_pred HHHHHHHHCC--CEEEEEeCCCc-HHHHHHHHHcCCceee-cCCCcHHHHHHHHHHHhC
Confidence 3556665543 35667777665 4566777777755333 344444566666666654
No 204
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=36.89 E-value=2.6e+02 Score=23.71 Aligned_cols=81 Identities=12% Similarity=0.136 Sum_probs=51.9
Q ss_pred cCCeehHHHHHHHHhcCCCCCeEEEEeCCC-----ChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHccc-CCCCE
Q 028320 8 LLGQPIALYSFYTFSRMVEVKEIVVVCDPS-----YSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD-FNSEL 79 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~~~ivVv~~~~-----~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~-~~~d~ 79 (210)
+-|+-.+.++-+.+...+ .++++|+++.. ..+.+.+.+++.+..+.+..+ .....+.+..+.+.+. .+.|.
T Consensus 11 ~fG~g~l~~l~~~l~~~g-~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~ 89 (379)
T TIGR02638 11 YFGAGAIEDIVDEVKRRG-FKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADY 89 (379)
T ss_pred EECcCHHHHHHHHHHhcC-CCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCE
Confidence 356777888888777664 58999999864 123455666666665554433 1233677777777664 35788
Q ss_pred EEEEeCCCCC
Q 028320 80 VCIHDSARPL 89 (210)
Q Consensus 80 vl~~~~d~Pl 89 (210)
|+-+-|=.++
T Consensus 90 IiaiGGGSvi 99 (379)
T TIGR02638 90 LIAIGGGSPI 99 (379)
T ss_pred EEEeCChHHH
Confidence 8877665544
No 205
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=36.69 E-value=1.6e+02 Score=24.21 Aligned_cols=63 Identities=13% Similarity=0.023 Sum_probs=35.5
Q ss_pred eehHHHHHHHHhcCCCCCeEEEEeCCC-ChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHccc
Q 028320 11 QPIALYSFYTFSRMVEVKEIVVVCDPS-YSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVD 74 (210)
Q Consensus 11 kpli~~~i~~~~~~~~~~~ivVv~~~~-~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~ 74 (210)
+-.+..+.+.+++.+. +..+.++... +...+.+.+...+.+..++.||.+....+.+||...+
T Consensus 19 ~~~~~~~~~~l~~~g~-~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~ 82 (301)
T COG1597 19 KKLLREVEELLEEAGH-ELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTD 82 (301)
T ss_pred hhHHHHHHHHHHhcCC-eEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCC
Confidence 3455666666777653 4444444443 3222222222234556677788888888888886653
No 206
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=36.54 E-value=2.5e+02 Score=23.34 Aligned_cols=82 Identities=15% Similarity=0.217 Sum_probs=45.3
Q ss_pred ccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEE
Q 028320 3 KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVC 81 (210)
Q Consensus 3 K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl 81 (210)
+.+.-||--.+=++.++++.....+++|.|...+.+. +.+.+..++++.++..+.. ...+++ ++|+|+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~-------~~eav~----~aDiVi 197 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATD-------PREAVE----GCDILV 197 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCC-------HHHHhc----cCCEEE
Confidence 4455566666777777777766667888887544332 2223333345544443322 223332 368766
Q ss_pred E-EeCCCCCCCHHHH
Q 028320 82 I-HDSARPLVLSKDV 95 (210)
Q Consensus 82 ~-~~~d~Pli~~~~i 95 (210)
. .....|++..+.+
T Consensus 198 taT~s~~P~~~~~~l 212 (325)
T TIGR02371 198 TTTPSRKPVVKADWV 212 (325)
T ss_pred EecCCCCcEecHHHc
Confidence 5 4466788877644
No 207
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=35.96 E-value=2.9e+02 Score=24.10 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=52.9
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCCCh---HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeC
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPSYS---DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDS 85 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~---~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~ 85 (210)
.|-.-+.-++..+.+.+ |+|+++ +...- ..+.+.++++|+++.++.... ..+.+..++ .++...|++...
T Consensus 92 SG~~Ai~~al~~ll~~G--d~VI~~-~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~-d~e~l~~~l---~~~tk~V~~e~~ 164 (437)
T PRK05613 92 SGQAAETAAILNLAGAG--DHIVTS-PRLYGGTETLFLVTLNRLGIEVTFVENPD-DPESWQAAV---QPNTKAFFGETF 164 (437)
T ss_pred CHHHHHHHHHHHhcCCC--CEEEEC-CCccHHHHHHHHHHHHhcCeEEEEECCCC-CHHHHHHhC---CccCeEEEEECC
Confidence 34444445555554333 566654 32221 122345567888888876211 234444443 334556777778
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 028320 86 ARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 86 d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
..|......|+.+.+.+++.+.
T Consensus 165 ~Np~~~v~di~~I~~la~~~gi 186 (437)
T PRK05613 165 ANPQADVLDIPAVAEVAHRNQV 186 (437)
T ss_pred CCCCCcccCHHHHHHHHHHcCC
Confidence 8898778888888887777654
No 208
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=35.69 E-value=2.7e+02 Score=23.43 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=54.7
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCCC--hHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCC
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPSY--SDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSA 86 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~~--~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d 86 (210)
+|...|..++ ++...+ |+|++....-. .......++.+|+++.++... ..+.+..++ .++...|++..+.
T Consensus 75 sG~~ai~~~~-~ll~~G--d~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~--d~~~l~~~i---~~~tklv~le~P~ 146 (366)
T PRK08247 75 SGMAAIQLVM-SLFRSG--DELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTA--SLKAIEQAI---TPNTKAIFIETPT 146 (366)
T ss_pred CHHHHHHHHH-HHhCCC--CEEEEecCCcCcHHHHHHHHhhccCceEEEECCC--CHHHHHHhc---ccCceEEEEECCC
Confidence 4544555444 344433 66666543221 112344455677777776542 134444443 3345678888899
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 028320 87 RPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 87 ~Pli~~~~i~~~i~~~~~~~~ 107 (210)
.|..+...++++.+..++.+.
T Consensus 147 NP~~~~~dl~~I~~la~~~g~ 167 (366)
T PRK08247 147 NPLMQETDIAAIAKIAKKHGL 167 (366)
T ss_pred CCCCcHHHHHHHHHHHHHcCC
Confidence 999999999999998887765
No 209
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=34.53 E-value=3e+02 Score=23.63 Aligned_cols=95 Identities=14% Similarity=0.060 Sum_probs=59.2
Q ss_pred eecCCeehHHHHHHHHhcCCCCCeEEEEeCCC-C-hHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEE
Q 028320 6 LPLLGQPIALYSFYTFSRMVEVKEIVVVCDPS-Y-SDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIH 83 (210)
Q Consensus 6 ~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~-~-~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~ 83 (210)
..-+|-.-|..++.++...+ |+|++..... . .....+.++.+|+.+.++... ..+.+..++ .++...|++.
T Consensus 90 ~~~sG~~Ai~~~l~all~~G--d~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~--d~~~l~~ai---~~~tklV~~e 162 (403)
T PRK07810 90 ATASGMSAVFTALGALLGAG--DRLVAARSLFGSCFVVCNEILPRWGVETVFVDGE--DLSQWEEAL---SVPTQAVFFE 162 (403)
T ss_pred EECChHHHHHHHHHHHhCCC--CEEEEccCCcchHHHHHHHHHHHcCcEEEEECCC--CHHHHHHhc---CcCceEEEEE
Confidence 33455555666776665443 6666653221 1 123345667788888777542 234444444 3345678888
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 84 DSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 84 ~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
.+..|.-..-+++.+.+.+++.+.
T Consensus 163 sp~Nptg~v~dl~~I~~la~~~g~ 186 (403)
T PRK07810 163 TPSNPMQSLVDIAAVSELAHAAGA 186 (403)
T ss_pred CCCCCCCeecCHHHHHHHHHHcCC
Confidence 899999988889998888877765
No 210
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.16 E-value=1.8e+02 Score=22.69 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=44.8
Q ss_pred CeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCC--ccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHH-HH
Q 028320 28 KEIVVVCDPSYS-DIFEETKEKINVDLKFSLPG--KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMD-AL 103 (210)
Q Consensus 28 ~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~--~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~-~~ 103 (210)
.++++.+++... +.+..+++++|..+ +.|. .....++++.+..+++..++++ .+|-|-=....+.+-+-+ .+
T Consensus 68 ~~~~amvS~s~DGEliA~~l~kfG~~~--IRGSs~Kgg~~Alr~l~k~Lk~G~~i~i--tpDgPkGp~~~~~~Gii~LA~ 143 (214)
T COG2121 68 KKIYAMVSPSRDGELIARLLEKFGLRV--IRGSSNKGGISALRALLKALKQGKSIAI--TPDGPKGPVHKIGDGIIALAQ 143 (214)
T ss_pred CcEEEEEcCCcCHHHHHHHHHHcCceE--EeccCCcchHHHHHHHHHHHhCCCcEEE--cCCCCCCCceeccchhhHhhH
Confidence 345655555432 45677888888553 4443 3346778888899975445544 466677666666554433 34
Q ss_pred hcCC
Q 028320 104 RVGA 107 (210)
Q Consensus 104 ~~~~ 107 (210)
.++.
T Consensus 144 ~sg~ 147 (214)
T COG2121 144 KSGV 147 (214)
T ss_pred hcCC
Confidence 4444
No 211
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=34.02 E-value=1.1e+02 Score=20.34 Aligned_cols=35 Identities=9% Similarity=0.216 Sum_probs=27.8
Q ss_pred ceecCCeehHHHHHHHHhcCC-CCCeEEEEeCCCCh
Q 028320 5 YLPLLGQPIALYSFYTFSRMV-EVKEIVVVCDPSYS 39 (210)
Q Consensus 5 l~~i~gkpli~~~i~~~~~~~-~~~~ivVv~~~~~~ 39 (210)
..-+|.||+..|++..+.+.. +.++|++-..-..|
T Consensus 3 ~i~vG~KPvmnYVlavlt~fn~g~~eV~iKarG~aI 38 (87)
T TIGR00285 3 VVYIGNKPVMNYVLAVLTQLNSGADEVIIKARGRAI 38 (87)
T ss_pred EEEEcCCcHHHHHHHHHHHHhCCCCeEEEEEecchh
Confidence 456899999999999987643 37899988777665
No 212
>PF15647 Tox-REase-3: Restriction endonuclease fold toxin 3
Probab=33.87 E-value=65 Score=21.94 Aligned_cols=51 Identities=14% Similarity=0.047 Sum_probs=30.6
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLK 54 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~ 54 (210)
|||++.=.-+.=+.-+++++.+.+ .+...=-...-++.+.+...++|+.|.
T Consensus 54 pkn~lnk~~R~QiK~TieaA~q~g--kka~f~F~~~v~~kv~eY~e~~G~~Vi 104 (109)
T PF15647_consen 54 PKNFLNKKTRNQIKATIEAAEQQG--KKAYFWFKGEVHDKVKEYIERYGGKVI 104 (109)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHhC--CeEEEEecccccHHHHHHHHHcCcEEE
Confidence 566666666667777888887765 233222222233567777777876654
No 213
>PLN02618 tryptophan synthase, beta chain
Probab=33.59 E-value=1.3e+02 Score=26.16 Aligned_cols=75 Identities=13% Similarity=-0.030 Sum_probs=47.6
Q ss_pred HHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccC--CCCEEEEEeCCCCCCCHHHHH
Q 028320 19 YTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF--NSELVCIHDSARPLVLSKDVQ 96 (210)
Q Consensus 19 ~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~--~~d~vl~~~~d~Pli~~~~i~ 96 (210)
..+..++ .++++.|++.+.++.++.+++..|+-+ + -+..+++..+++..+. +.+.|+++.+++-.-+.+.+.
T Consensus 330 ~~l~~~~-~~~~v~VtD~Eal~a~~~La~~eGIi~----~-~sSa~a~a~a~~~a~~l~~~~~iVv~lsgrG~Kd~~~v~ 403 (410)
T PLN02618 330 SFLKDTG-RAEYYSVTDEEALEAFQRLSRLEGIIP----A-LETSHALAYLEKLCPTLPDGTKVVVNCSGRGDKDVNTAI 403 (410)
T ss_pred HHHHhhc-CcEEEEECHHHHHHHHHHHHHHcCceE----c-hhHHHHHHHHHHHhHhcCCCCEEEEEeCCCCcCCHHHHH
Confidence 3344443 678888888876677777777655332 2 2234555555555432 346777788999988888886
Q ss_pred HHH
Q 028320 97 KVL 99 (210)
Q Consensus 97 ~~i 99 (210)
+.+
T Consensus 404 ~~~ 406 (410)
T PLN02618 404 KYL 406 (410)
T ss_pred HHh
Confidence 654
No 214
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=33.37 E-value=2.1e+02 Score=21.43 Aligned_cols=70 Identities=10% Similarity=0.170 Sum_probs=42.6
Q ss_pred HHHHHHHhhcCCcE-EEecC-----CccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEE
Q 028320 40 DIFEETKEKINVDL-KFSLP-----GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVL 110 (210)
Q Consensus 40 ~~i~~~~~~~~~~v-~~~~~-----~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~ 110 (210)
..+.+.+++.|..+ .|... ..+...-+...++.+. ..++|++|+++..--+.+.+..+|..+++.|.-+.
T Consensus 110 ~~~~~~l~~~G~~~v~w~~~~~D~~~~~~~~i~~~~~~~~~-~g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~v 185 (191)
T TIGR02764 110 KAVLKAAESLGYTVVHWSVDSRDWKNPGVESIVDRVVKNTK-PGDIILLHASDSAKQTVKALPTIIKKLKEKGYEFV 185 (191)
T ss_pred HHHHHHHHHcCCeEEEecCCCCccCCCCHHHHHHHHHhcCC-CCCEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEE
Confidence 45566777777543 22211 1111122334556655 35799999887666778888999999888776443
No 215
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=32.78 E-value=3.1e+02 Score=23.35 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=53.4
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCCC--hHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCC
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPSY--SDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSA 86 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~~--~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d 86 (210)
+|..-+..++.++...+ |+|++...... ...+...+..+|+.+.++... ..+.+..++ .++...|++..+.
T Consensus 82 sG~~Ai~~~l~al~~~G--d~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~--d~e~l~~~i---~~~tklV~le~p~ 154 (391)
T TIGR01328 82 SGMGAIAATLLTILKAG--DHLISDECLYGCTFALLEHALTKFGIQVDFINMA--IPEEVKAHI---KDNTKIVYFETPA 154 (391)
T ss_pred CHHHHHHHHHHHHhCCC--CEEEEecCcchHHHHHHHHHHhcCCeEEEEECCC--CHHHHHHhh---ccCCeEEEEECCC
Confidence 45555666666665433 56555432211 123344555677777666542 134444433 3345677777888
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 028320 87 RPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 87 ~Pli~~~~i~~~i~~~~~~~~ 107 (210)
.|.-....++++.+..++.+.
T Consensus 155 Np~G~v~dl~~I~~la~~~gi 175 (391)
T TIGR01328 155 NPTMKLIDMERVCRDAHSQGV 175 (391)
T ss_pred CCCCcccCHHHHHHHHHHcCC
Confidence 898888788888877776654
No 216
>PRK05939 hypothetical protein; Provisional
Probab=32.61 E-value=3.2e+02 Score=23.41 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=55.7
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCC-ChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCC
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPS-YSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSAR 87 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~-~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~ 87 (210)
.|..-|..++.++.+.+ |+|++....- ....+...++.+|+++.++... ..+.+..++ .++...|++..+..
T Consensus 70 sG~~Ai~~~l~all~~G--d~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~--d~e~l~~~l---~~~tklV~vesp~N 142 (397)
T PRK05939 70 TGMAAIAAVFLTLLRAG--DHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT--DVQNVAAAI---RPNTRMVFVETIAN 142 (397)
T ss_pred CHHHHHHHHHHHHcCCC--CEEEECCCccccHHHHHHHHHhcCCEEEEECCC--CHHHHHHhC---CCCCeEEEEECCCC
Confidence 34445566666665443 6666644321 1111223456678777776542 134454443 33456777778889
Q ss_pred CCCCHHHHHHHHHHHHhcCC
Q 028320 88 PLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 88 Pli~~~~i~~~i~~~~~~~~ 107 (210)
|.-....++++.+.+++.+.
T Consensus 143 ptG~v~dl~~I~~la~~~gi 162 (397)
T PRK05939 143 PGTQVADLAGIGALCRERGL 162 (397)
T ss_pred CCCCHHhHHHHHHHHHHcCC
Confidence 99999999999998887765
No 217
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=32.11 E-value=2.9e+02 Score=23.31 Aligned_cols=34 Identities=3% Similarity=-0.070 Sum_probs=25.0
Q ss_pred ceecCCee---hHHHHHHHHhcCCCCCeEEEEeCCCC
Q 028320 5 YLPLLGQP---IALYSFYTFSRMVEVKEIVVVCDPSY 38 (210)
Q Consensus 5 l~~i~gkp---li~~~i~~~~~~~~~~~ivVv~~~~~ 38 (210)
+.-+|.|| .+.-++.++++...++.++|+||.+.
T Consensus 4 ~~v~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~ 40 (365)
T TIGR03568 4 CVVTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHL 40 (365)
T ss_pred EEEEecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Confidence 34455555 46777888887667999999999774
No 218
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=31.96 E-value=2.1e+02 Score=21.44 Aligned_cols=40 Identities=5% Similarity=0.135 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCC------ChHHHHHHHhhcCCcE
Q 028320 14 ALYSFYTFSRMVEVKEIVVVCDPS------YSDIFEETKEKINVDL 53 (210)
Q Consensus 14 i~~~i~~~~~~~~~~~ivVv~~~~------~~~~i~~~~~~~~~~v 53 (210)
+...++.+++....++|+||.... .....+.+.+.+|+++
T Consensus 64 ~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpv 109 (168)
T PF09419_consen 64 YAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPV 109 (168)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcE
Confidence 344466676664334677777752 1133444555667664
No 219
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=31.32 E-value=3.4e+02 Score=23.32 Aligned_cols=96 Identities=21% Similarity=0.197 Sum_probs=57.4
Q ss_pred ceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCCh--HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEE
Q 028320 5 YLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 5 l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~--~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~ 82 (210)
+..-+|...|..++.++.+.+ |+|++....-.- ..+...++..+..+..+.... .+.+..++ .++...|++
T Consensus 79 v~~~sG~~Ai~~~l~all~pG--D~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d--~~~l~~~i---~~~tklV~l 151 (405)
T PRK08776 79 VITATGMGAINLVLNALLQPG--DTLVVPHDAYGGSWRLFNALAKKGHFALITADLTD--PRSLADAL---AQSPKLVLI 151 (405)
T ss_pred EEEcCHHHHHHHHHHHHhCCC--CEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCC--HHHHHHhc---CcCCeEEEE
Confidence 444456666777777775544 666664332210 113444555666666554321 23344333 334567888
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 83 HDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
..+..|.-....++++.+.+++.+.
T Consensus 152 ~~P~NPtG~v~dl~~I~~la~~~gi 176 (405)
T PRK08776 152 ETPSNPLLRITDLRFVIEAAHKVGA 176 (405)
T ss_pred ECCCCCCCccCCHHHHHHHHHHcCC
Confidence 8888999888889999888877654
No 220
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=31.31 E-value=3.5e+02 Score=23.49 Aligned_cols=95 Identities=19% Similarity=0.201 Sum_probs=57.5
Q ss_pred eecCCeehHHHHHHHHhcCCCCCeEEEEeCCC--ChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEE
Q 028320 6 LPLLGQPIALYSFYTFSRMVEVKEIVVVCDPS--YSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIH 83 (210)
Q Consensus 6 ~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~--~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~ 83 (210)
..-+|..-+..++.++.+.+ |+|++..... ....+...++.+|+++.++... ..+.+..++ .++...|++.
T Consensus 84 ~~~sG~~Ai~~al~~ll~~G--D~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~--d~e~l~~ai---~~~tklV~l~ 156 (431)
T PRK08248 84 AVSSGQAAITYSILNIASAG--DEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS--DPENFEAAI---TDKTKALFAE 156 (431)
T ss_pred EECCHHHHHHHHHHHHhCCC--CEEEEccCchhhHHHHHHHHHHhCCEEEEEECCC--CHHHHHHhc---CCCCeEEEEE
Confidence 33455556666776665443 5666553221 1123345566778877777542 234444443 3345677777
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 84 DSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 84 ~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
.+..|.-...+++++.+..++.+.
T Consensus 157 sp~NPtG~v~di~~I~~la~~~gi 180 (431)
T PRK08248 157 TIGNPKGDVLDIEAVAAIAHEHGI 180 (431)
T ss_pred CCCCCCCcccCHHHHHHHHHHcCC
Confidence 888898888888888887777664
No 221
>COG4378 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.26 E-value=1.7e+02 Score=19.70 Aligned_cols=70 Identities=9% Similarity=0.135 Sum_probs=43.6
Q ss_pred EEeCCCChHHHHHHHhhcCC-cEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028320 32 VVCDPSYSDIFEETKEKINV-DLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV 109 (210)
Q Consensus 32 Vv~~~~~~~~i~~~~~~~~~-~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~ 109 (210)
.+.|.+++..|++.+...|+ ++..+.|.+.+. --..++.+.|.++++.. |+..+..+.+=...+..+-.+
T Consensus 4 lviGaD~lg~I~~kL~e~GfskIeHvtgRk~~~-----~kk~Ips~~dlilvLtd---f~nHNl~~~iK~eakk~~ip~ 74 (103)
T COG4378 4 LVIGADELGPIRAKLHELGFSKIEHVTGRKNRV-----NKKPIPSDTDLILVLTD---FLNHNLMKKIKNEAKKRKIPL 74 (103)
T ss_pred EEEcccccccHHHHHHhcChhheEEeecccccc-----ccccCCCCccEEEEEhh---hhcchHHHHHHHHHhhcCCCe
Confidence 34455556677888887775 455565543221 11223445688888865 999999888877666665433
No 222
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=30.83 E-value=87 Score=25.80 Aligned_cols=91 Identities=5% Similarity=-0.057 Sum_probs=47.6
Q ss_pred ehHHHHHHHHhcCCCCCeEEEEeCCCCh----H-----HHHHHHhhcC---CcEEEecCCccHHHHHHHHHHcccC----
Q 028320 12 PIALYSFYTFSRMVEVKEIVVVCDPSYS----D-----IFEETKEKIN---VDLKFSLPGKERQDSVYSGLQEVDF---- 75 (210)
Q Consensus 12 pli~~~i~~~~~~~~~~~ivVv~~~~~~----~-----~i~~~~~~~~---~~v~~~~~~~~~~~si~~~l~~~~~---- 75 (210)
.-|...+..+.+.+ ++.|.+++|+... . ...++++..+ +.+..-+.+.....+...-+..++.
T Consensus 97 ~~l~~~L~~~~~~G-I~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~~~i~va~yPeghp~~~~~~~dl~~Lk~K~~a 175 (296)
T PRK09432 97 DELRTIAKDYWNNG-IRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAYPEVHPEAKSAQADLINLKRKVDA 175 (296)
T ss_pred HHHHHHHHHHHHCC-CCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCCCccceeeCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 34667777887775 8999999998521 0 1122333322 1121111111011111112222221
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
-.++ + -++||.+.+.+.++++.+...|.
T Consensus 176 GA~~-~---iTQ~~Fd~~~~~~f~~~~~~~Gi 203 (296)
T PRK09432 176 GANR-A---ITQFFFDVESYLRFRDRCVSAGI 203 (296)
T ss_pred CCCe-e---ecccccchHHHHHHHHHHHHcCC
Confidence 1343 2 35789999999999998877663
No 223
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=30.75 E-value=1e+02 Score=26.21 Aligned_cols=51 Identities=8% Similarity=0.146 Sum_probs=36.2
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChH-----HHHHHHhhcCCcEE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD-----IFEETKEKINVDLK 54 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~-----~i~~~~~~~~~~v~ 54 (210)
+.++..+.++|+.. ..+++.+++ +.+||+.+|.+.-. ...+.++..|++|.
T Consensus 44 ~g~~i~~s~~p~~~-cad~ii~~g-i~rVVi~~D~d~~G~~~~~~~~~~L~~aGi~V~ 99 (360)
T PRK14719 44 NANFITVSNTPVFQ-IADDLIAEN-ISEVILLTDFDRAGRVYAKNIMEEFQSRGIKVN 99 (360)
T ss_pred CCcEEEEeCCchHH-HHHHHHHcC-CCEEEEEECCCCCCCccchHHHHHHHHCCCEEE
Confidence 35677888888765 888888886 89999999544311 12466777887763
No 224
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=30.66 E-value=3e+02 Score=23.23 Aligned_cols=70 Identities=4% Similarity=0.126 Sum_probs=47.0
Q ss_pred CeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHccc--------CCCCEEEEEeCCCCCCCHHHHHHH
Q 028320 28 KEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVD--------FNSELVCIHDSARPLVLSKDVQKV 98 (210)
Q Consensus 28 ~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~--------~~~d~vl~~~~d~Pli~~~~i~~~ 98 (210)
.+++||++..+. .--...++.+|..|.+.. .+...++..+++..+ ...|+++...|..-.+..+.++++
T Consensus 214 GKv~Vv~GYGdVGKgCaqaLkg~g~~VivTE--iDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTGc~dii~~~H~~~m 291 (434)
T KOG1370|consen 214 GKVAVVCGYGDVGKGCAQALKGFGARVIVTE--IDPICALQAAMEGYEVTTLEEAIREVDIFVTTTGCKDIITGEHFDQM 291 (434)
T ss_pred ccEEEEeccCccchhHHHHHhhcCcEEEEec--cCchHHHHHHhhccEeeeHHHhhhcCCEEEEccCCcchhhHHHHHhC
Confidence 678999999865 223344456676654443 234566666665543 246889999999999999988877
Q ss_pred H
Q 028320 99 L 99 (210)
Q Consensus 99 i 99 (210)
=
T Consensus 292 k 292 (434)
T KOG1370|consen 292 K 292 (434)
T ss_pred c
Confidence 4
No 225
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=30.41 E-value=3.5e+02 Score=23.16 Aligned_cols=93 Identities=20% Similarity=0.350 Sum_probs=53.3
Q ss_pred cCCeehHHHHHHHHhcCCCCCeEEEEeCCCCh--HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeC
Q 028320 8 LLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDS 85 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~--~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~ 85 (210)
-+|..-|..++.++.+.+ |+|++....-.- ..+...+..+|+++.++... ..+.+..++ .++...|++..+
T Consensus 86 ssG~~Ai~~~l~all~~G--D~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~--d~e~l~~~i---~~~tklV~ie~p 158 (398)
T PRK08249 86 STGMAAISNTLYTFLKPG--DRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETG--DHEQIEAEI---AKGCDLLYLETP 158 (398)
T ss_pred CChHHHHHHHHHHhcCCC--CEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCC--CHHHHHHhc---CCCCeEEEEECC
Confidence 345555666666665443 565554332210 11233455667776665432 134444443 334567777788
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 028320 86 ARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 86 d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
..|.-..-+++.+.+..++++.
T Consensus 159 ~NPtg~v~dl~~I~~la~~~gi 180 (398)
T PRK08249 159 TNPTLKIVDIERLAAAAKKVGA 180 (398)
T ss_pred CCCCCccCCHHHHHHHHHHcCC
Confidence 8998888888888887777664
No 226
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=30.09 E-value=1.4e+02 Score=25.61 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=55.6
Q ss_pred eehHHHHHHHHhcCCC--CCeEEEEeCCC--ChHHHHHHHhhcC-CcEEEecCCccH-----HHHHHHHHHcccCCCCEE
Q 028320 11 QPIALYSFYTFSRMVE--VKEIVVVCDPS--YSDIFEETKEKIN-VDLKFSLPGKER-----QDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 11 kpli~~~i~~~~~~~~--~~~ivVv~~~~--~~~~i~~~~~~~~-~~v~~~~~~~~~-----~~si~~~l~~~~~~~d~v 80 (210)
-|=+.|-+|++..+.. .+-..++-+++ .++.++.++++|. ++.++.-||.+. ..-..-|.+.. +.|+|
T Consensus 97 d~nl~~Nlesffts~Y~~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKInN~mpgy~~a--~ydlv 174 (431)
T KOG2547|consen 97 DPNLYHNLESFFTSQYHKYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKINNMMPGYRAA--KYDLV 174 (431)
T ss_pred CchhHHhHHHHHhhccCceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEcccccccChhhhccCHHHHHh--cCCEE
Confidence 3567788888877653 23344443333 3456677888886 344444444432 33334455544 37899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~ 104 (210)
++.|.+. ++.|+.|-++...+..
T Consensus 175 lisDsgI-~m~pdtildm~t~M~s 197 (431)
T KOG2547|consen 175 LISDSGI-FMKPDTILDMATTMMS 197 (431)
T ss_pred EEecCCe-eecCchHHHHHHhhhc
Confidence 9887665 6788888888887764
No 227
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=29.91 E-value=3.7e+02 Score=23.36 Aligned_cols=91 Identities=20% Similarity=0.196 Sum_probs=53.2
Q ss_pred CeehHHHHHHHHhcCCCCCeEEEEeCCCC-h-HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCC
Q 028320 10 GQPIALYSFYTFSRMVEVKEIVVVCDPSY-S-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSAR 87 (210)
Q Consensus 10 gkpli~~~i~~~~~~~~~~~ivVv~~~~~-~-~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~ 87 (210)
|-.-|..++..+.+.+ |+|++...... . ..+...++++|+++.++... ..+.+..++ .++...|++.....
T Consensus 88 Gt~Al~~al~~ll~~G--d~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~--d~~~l~~~i---~~~TklV~~e~~~n 160 (433)
T PRK08134 88 GQAALHLAIATLMGAG--SHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG--DIDGWRAAI---RPNTRLLFGETLGN 160 (433)
T ss_pred HHHHHHHHHHHHhCCC--CEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC--CHHHHHHhc---CCCCeEEEEECCCc
Confidence 3334455565554443 56655443221 1 12233345678787777542 134444433 33456788888889
Q ss_pred CCCCHHHHHHHHHHHHhcCC
Q 028320 88 PLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 88 Pli~~~~i~~~i~~~~~~~~ 107 (210)
|.....+++.+.+..++.+.
T Consensus 161 p~g~v~Di~~I~~la~~~gi 180 (433)
T PRK08134 161 PGLEVLDIPTVAAIAHEAGV 180 (433)
T ss_pred ccCcccCHHHHHHHHHHcCC
Confidence 98888888888888877664
No 228
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=29.47 E-value=74 Score=19.54 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=26.7
Q ss_pred CeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC
Q 028320 10 GQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN 50 (210)
Q Consensus 10 gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~ 50 (210)
|+-|+.++.+.+++. .+..+.+.+.... ....+..++.|
T Consensus 43 g~~L~~~~~~~~~~~-g~~~i~~~~~~~n-~~~~~~~~k~G 81 (83)
T PF00583_consen 43 GSKLLQAAEEWARKR-GIKRIYLDVSPDN-PAARRFYEKLG 81 (83)
T ss_dssp HHHHHHHHHHHHHHT-TESEEEEEEETTG-HHHHHHHHHTT
T ss_pred chhhhhhhhhhHHhc-CccEEEEEEeCCC-HHHHHHHHHcC
Confidence 567888888888885 4888888887775 33344444443
No 229
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=28.91 E-value=2.2e+02 Score=21.12 Aligned_cols=35 Identities=3% Similarity=0.123 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCC
Q 028320 14 ALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV 51 (210)
Q Consensus 14 i~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~ 51 (210)
...+++.+++.+ + +++++|++.. ......++..|.
T Consensus 132 ~~~~l~~L~~~G-i-~~~i~TGD~~-~~a~~~~~~lgi 166 (215)
T PF00702_consen 132 AKEALQELKEAG-I-KVAILTGDNE-STASAIAKQLGI 166 (215)
T ss_dssp HHHHHHHHHHTT-E-EEEEEESSEH-HHHHHHHHHTTS
T ss_pred hhhhhhhhhccC-c-ceeeeecccc-cccccccccccc
Confidence 445556665554 2 5666666553 334455555554
No 230
>PRK06823 ornithine cyclodeaminase; Validated
Probab=28.66 E-value=3.4e+02 Score=22.50 Aligned_cols=82 Identities=10% Similarity=0.136 Sum_probs=45.2
Q ss_pred ccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEE
Q 028320 3 KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVC 81 (210)
Q Consensus 3 K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl 81 (210)
|-+.-+|--..=.+.++++.....+++|.|.....+. +.+.+.+++.+.++..+.. ...++. ++|+|+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~-------~~~av~----~ADIV~ 197 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLD-------AAEVAH----AANLIV 197 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECC-------HHHHhc----CCCEEE
Confidence 4455566666666777777766667788776555432 2233333333444433311 222322 367655
Q ss_pred E-EeCCCCCCCHHHH
Q 028320 82 I-HDSARPLVLSKDV 95 (210)
Q Consensus 82 ~-~~~d~Pli~~~~i 95 (210)
. ..+..|++..+.+
T Consensus 198 taT~s~~P~~~~~~l 212 (315)
T PRK06823 198 TTTPSREPLLQAEDI 212 (315)
T ss_pred EecCCCCceeCHHHc
Confidence 4 6677898887655
No 231
>PRK07589 ornithine cyclodeaminase; Validated
Probab=27.60 E-value=3.8e+02 Score=22.66 Aligned_cols=82 Identities=6% Similarity=0.088 Sum_probs=43.5
Q ss_pred ccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEE
Q 028320 3 KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVC 81 (210)
Q Consensus 3 K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl 81 (210)
+-+.-||--+.=.+.++++.....+++|.|.....+. +.+.+.+++.+.++..+.. +..++. ++|+|+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~-------~~~av~----~ADIIv 198 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRS-------VAEAVE----GADIIT 198 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCC-------HHHHHh----cCCEEE
Confidence 3345556666666777777766667888887555431 1222222322333433321 223332 367877
Q ss_pred EEeCC-C--CCCCHHHH
Q 028320 82 IHDSA-R--PLVLSKDV 95 (210)
Q Consensus 82 ~~~~d-~--Pli~~~~i 95 (210)
..... . |++..+.+
T Consensus 199 taT~S~~~~Pvl~~~~l 215 (346)
T PRK07589 199 TVTADKTNATILTDDMV 215 (346)
T ss_pred EecCCCCCCceecHHHc
Confidence 76653 3 88877655
No 232
>PHA00673 acetyltransferase domain containing protein
Probab=27.14 E-value=61 Score=23.99 Aligned_cols=28 Identities=7% Similarity=-0.104 Sum_probs=24.0
Q ss_pred CeehHHHHHHHHhcCCCCCeEEEEeCCCC
Q 028320 10 GQPIALYSFYTFSRMVEVKEIVVVCDPSY 38 (210)
Q Consensus 10 gkpli~~~i~~~~~~~~~~~ivVv~~~~~ 38 (210)
|+-|+.|+++.+++.+ +..++|+..+..
T Consensus 103 G~~Ll~~A~~~Ar~~G-c~~lyis~~p~~ 130 (154)
T PHA00673 103 GMALLRATEALARDLG-ATGLYVSGPTEG 130 (154)
T ss_pred HHHHHHHHHHHHHHCC-CCEEEEecCCCc
Confidence 6779999999999886 899999887764
No 233
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=26.04 E-value=2e+02 Score=20.36 Aligned_cols=29 Identities=21% Similarity=0.095 Sum_probs=12.5
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHhcCCe
Q 028320 78 ELVCIHDSARPLVLSKDVQKVLMDALRVGAA 108 (210)
Q Consensus 78 d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~ 108 (210)
+.++...+. -....+++.+.+.+...+.+
T Consensus 26 ep~i~~~~~--~~g~tiie~le~~~~~~~fa 54 (125)
T PF10137_consen 26 EPIIWHEQP--NLGQTIIEKLEEAADSVDFA 54 (125)
T ss_pred ceEEeecCC--CCCCchHHHHHHHhccCCEE
Confidence 444444433 33344455555444444433
No 234
>PLN02494 adenosylhomocysteinase
Probab=25.83 E-value=2.1e+02 Score=25.50 Aligned_cols=69 Identities=7% Similarity=0.157 Sum_probs=38.1
Q ss_pred CeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccH-HHHHHHHH------HcccCCCCEEEEEeCCCCCCCHHHHHH
Q 028320 28 KEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKER-QDSVYSGL------QEVDFNSELVCIHDSARPLVLSKDVQK 97 (210)
Q Consensus 28 ~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~-~~si~~~l------~~~~~~~d~vl~~~~d~Pli~~~~i~~ 97 (210)
.+.++|.|.-.+ ..+...++.+|..|.++.....+ ..+...+. +.+ ...|+|+...++..++..+.++.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal-~~ADVVI~tTGt~~vI~~e~L~~ 330 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVV-SEADIFVTTTGNKDIIMVDHMRK 330 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHH-hhCCEEEECCCCccchHHHHHhc
Confidence 577778888877 45566667778776554332221 12221221 111 14688887777666666555543
No 235
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=25.39 E-value=1.8e+02 Score=20.44 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=32.1
Q ss_pred HHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHH
Q 028320 41 IFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMD 101 (210)
Q Consensus 41 ~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~ 101 (210)
.+.++++++|..+....--.+..+.+.++++.+-+.+|.|++.-|..+= ..+...+.++.
T Consensus 23 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g-~~D~t~~ai~~ 82 (133)
T cd00758 23 ALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVG-RRDVTPEALAE 82 (133)
T ss_pred HHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCC-CCcchHHHHHH
Confidence 5677777888665432110112455666665543247888877665543 33444444443
No 236
>PRK13770 histidinol dehydrogenase; Provisional
Probab=25.17 E-value=2.7e+02 Score=24.30 Aligned_cols=44 Identities=20% Similarity=0.161 Sum_probs=24.8
Q ss_pred ehHHHHHHHHh--cCCCCCeEEEEeCCCC--h-HHHHHHHhhcCCcEEE
Q 028320 12 PIALYSFYTFS--RMVEVKEIVVVCDPSY--S-DIFEETKEKINVDLKF 55 (210)
Q Consensus 12 pli~~~i~~~~--~~~~~~~ivVv~~~~~--~-~~i~~~~~~~~~~v~~ 55 (210)
|+...++=.+. +..++.+|+++|++.. + ..+.-.++-.|+.-.|
T Consensus 124 ~ypStvLM~aiPAkvAGV~~Iv~~TPp~~~~i~p~iL~Aa~~~Gv~eIy 172 (416)
T PRK13770 124 SYPSTVLMTATLAQVAGVENIVVVTPPQPNGVSQEVLAACYITQVNQVF 172 (416)
T ss_pred CccHHHHHhhccHhhcCCCeEEEEeCcCCCCCCHHHHHHHHHcCCCeee
Confidence 66666665542 2235889999998753 2 3444444445554333
No 237
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=25.16 E-value=2.3e+02 Score=19.26 Aligned_cols=77 Identities=9% Similarity=0.038 Sum_probs=42.2
Q ss_pred HHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccC--CCCEEEEEeCCCCCCCHHH
Q 028320 17 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF--NSELVCIHDSARPLVLSKD 94 (210)
Q Consensus 17 ~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~--~~d~vl~~~~d~Pli~~~~ 94 (210)
++.-++..+ .+|+++..++. -.+.++++|+...+.....+ +...+..+.. ..|.|+-+.+ +++.
T Consensus 6 a~q~ak~~G--~~vi~~~~~~~---k~~~~~~~Ga~~~~~~~~~~----~~~~i~~~~~~~~~d~vid~~g-----~~~~ 71 (130)
T PF00107_consen 6 AIQLAKAMG--AKVIATDRSEE---KLELAKELGADHVIDYSDDD----FVEQIRELTGGRGVDVVIDCVG-----SGDT 71 (130)
T ss_dssp HHHHHHHTT--SEEEEEESSHH---HHHHHHHTTESEEEETTTSS----HHHHHHHHTTTSSEEEEEESSS-----SHHH
T ss_pred HHHHHHHcC--CEEEEEECCHH---HHHHHHhhcccccccccccc----cccccccccccccceEEEEecC-----cHHH
Confidence 444455444 66777666543 24677888865444433332 2233333322 2455555544 5788
Q ss_pred HHHHHHHHHhcCC
Q 028320 95 VQKVLMDALRVGA 107 (210)
Q Consensus 95 i~~~i~~~~~~~~ 107 (210)
++..++.+...+.
T Consensus 72 ~~~~~~~l~~~G~ 84 (130)
T PF00107_consen 72 LQEAIKLLRPGGR 84 (130)
T ss_dssp HHHHHHHEEEEEE
T ss_pred HHHHHHHhccCCE
Confidence 8888887655543
No 238
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=25.14 E-value=3.9e+02 Score=21.94 Aligned_cols=95 Identities=9% Similarity=0.110 Sum_probs=48.5
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCC---ccHHHHHHHHHHcccCCCCEEEEEeC
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG---KERQDSVYSGLQEVDFNSELVCIHDS 85 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~---~~~~~si~~~l~~~~~~~d~vl~~~~ 85 (210)
+|.--+..++.++...+ ++|++......-......++..|.++.++... .-..+.+...++. ++...|++..+
T Consensus 58 ~~t~al~~~~~~~~~~g--~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~--~~~~~v~i~~~ 133 (356)
T cd06451 58 SGTGAMEAALSNLLEPG--DKVLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQ--HDIKAVTLTHN 133 (356)
T ss_pred CcHHHHHHHHHHhCCCC--CEEEEecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhc--cCCCEEEEecc
Confidence 44556677777665432 56655433221112345566677776665422 1123445444432 14566666656
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 028320 86 ARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 86 d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
..|.=....++.+.+..++.+.
T Consensus 134 ~~~~G~~~~~~~i~~~a~~~~~ 155 (356)
T cd06451 134 ETSTGVLNPLEGIGALAKKHDA 155 (356)
T ss_pred CCCcccccCHHHHHHHHHhcCC
Confidence 5554444456666665555553
No 239
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=24.56 E-value=3.2e+02 Score=20.72 Aligned_cols=75 Identities=9% Similarity=0.028 Sum_probs=44.0
Q ss_pred eEEEEeCCCCh--HHHHHHHhhcCCcEEE-ecCCccH--HHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHH
Q 028320 29 EIVVVCDPSYS--DIFEETKEKINVDLKF-SLPGKER--QDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDAL 103 (210)
Q Consensus 29 ~ivVv~~~~~~--~~i~~~~~~~~~~v~~-~~~~~~~--~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~ 103 (210)
+++++|+-+.. ..++..+++.|....- ..|..++ ...+..-+...+ .|.|+++.-|.-+.-.-.=+..+....
T Consensus 1 kVIlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~--~DPV~VMfDD~G~~g~G~GE~Al~~v~ 78 (180)
T PF14097_consen 1 KVILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAP--HDPVLVMFDDKGFIGEGPGEQALEYVA 78 (180)
T ss_pred CEEEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCC--CCCEEEEEeCCCCCCCCccHHHHHHHH
Confidence 46888888754 3445566677766432 2332232 333444444433 688888888998887655555555544
Q ss_pred hc
Q 028320 104 RV 105 (210)
Q Consensus 104 ~~ 105 (210)
..
T Consensus 79 ~h 80 (180)
T PF14097_consen 79 NH 80 (180)
T ss_pred cC
Confidence 33
No 240
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=24.54 E-value=4.6e+02 Score=22.61 Aligned_cols=83 Identities=7% Similarity=0.101 Sum_probs=51.6
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCCC-----hHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHccc-CCCCEE
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPSY-----SDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD-FNSELV 80 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~~-----~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~-~~~d~v 80 (210)
-|.--+..+-+.+.+.+ ..+++|+++..- .+.+.+.+++.|+.+....+ .....+.+..+++.+. .+.|.|
T Consensus 6 fG~g~~~~l~~~l~~~g-~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~I 84 (414)
T cd08190 6 FGPGVTAEVGMDLKNLG-ARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAF 84 (414)
T ss_pred ECcCHHHHHHHHHHHcC-CCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEE
Confidence 36666777777776664 579999998741 13445555555655544322 2334667777777764 357888
Q ss_pred EEEeCCCCCCCH
Q 028320 81 CIHDSARPLVLS 92 (210)
Q Consensus 81 l~~~~d~Pli~~ 92 (210)
+-+-|=.++=..
T Consensus 85 IaiGGGSviD~A 96 (414)
T cd08190 85 VAVGGGSVIDTA 96 (414)
T ss_pred EEeCCccHHHHH
Confidence 888776665333
No 241
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=24.46 E-value=1.3e+02 Score=24.27 Aligned_cols=76 Identities=13% Similarity=0.273 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCH
Q 028320 15 LYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLS 92 (210)
Q Consensus 15 ~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~ 92 (210)
.|+++++..++ +.+|.++ +.+.+. +-+ .+-.+.-..+ |+...+.+..-+..+++.++.-.+. =|+++
T Consensus 43 Sw~veALaRsG-ig~itlI-D~D~v~-vTN----~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~----~f~t~ 111 (263)
T COG1179 43 SWAVEALARSG-IGRITLI-DMDDVC-VTN----TNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIN----DFITE 111 (263)
T ss_pred HHHHHHHHHcC-CCeEEEE-eccccc-ccc----cchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehH----hhhCH
Confidence 57888888886 7888775 333221 111 1101111111 3445666777777776554432222 27888
Q ss_pred HHHHHHHHH
Q 028320 93 KDVQKVLMD 101 (210)
Q Consensus 93 ~~i~~~i~~ 101 (210)
+.+++++..
T Consensus 112 en~~~~~~~ 120 (263)
T COG1179 112 ENLEDLLSK 120 (263)
T ss_pred hHHHHHhcC
Confidence 888777654
No 242
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=24.23 E-value=2.9e+02 Score=20.14 Aligned_cols=74 Identities=9% Similarity=0.131 Sum_probs=42.0
Q ss_pred CeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCC-CEEEEEeC
Q 028320 10 GQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNS-ELVCIHDS 85 (210)
Q Consensus 10 gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~-d~vl~~~~ 85 (210)
|--|+..+-+..++....=+|+|+.++.. ..+.++++..|+++..+..+.++..- ..-+..++... -.+++.++
T Consensus 28 gGklf~ev~e~iqeL~d~V~i~IASgDr~-gsl~~lae~~gi~~~rv~a~a~~e~K-~~ii~eLkk~~~k~vmVGnG 102 (152)
T COG4087 28 GGKLFSEVSETIQELHDMVDIYIASGDRK-GSLVQLAEFVGIPVERVFAGADPEMK-AKIIRELKKRYEKVVMVGNG 102 (152)
T ss_pred CcEEcHhhHHHHHHHHHhheEEEecCCcc-hHHHHHHHHcCCceeeeecccCHHHH-HHHHHHhcCCCcEEEEecCC
Confidence 34456666666655554567888888775 56677777778777766554444211 12344554222 34454444
No 243
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=24.21 E-value=2.8e+02 Score=20.00 Aligned_cols=62 Identities=10% Similarity=0.051 Sum_probs=36.6
Q ss_pred CeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHH
Q 028320 28 KEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQ 96 (210)
Q Consensus 28 ~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~ 96 (210)
.+++|+-.+... ..+..++.+.|..+..+...+ .++..+++ ++|+|+...+-.|+++.+.++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---~~l~~~v~----~ADIVvsAtg~~~~i~~~~ik 91 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---IQLQSKVH----DADVVVVGSPKPEKVPTEWIK 91 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---cCHHHHHh----hCCEEEEecCCCCccCHHHcC
Confidence 356665555433 345555555566666554322 12333332 368999988888998888763
No 244
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=24.08 E-value=3.4e+02 Score=21.01 Aligned_cols=86 Identities=13% Similarity=-0.042 Sum_probs=47.7
Q ss_pred CCeehHHHHHHHHhcCCCCCeE-EEEeCCCChHHHHHHHhhcCCcEEEecCCc--c---HHHHHHHHHHcccCCCCEEEE
Q 028320 9 LGQPIALYSFYTFSRMVEVKEI-VVVCDPSYSDIFEETKEKINVDLKFSLPGK--E---RQDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~i-vVv~~~~~~~~i~~~~~~~~~~v~~~~~~~--~---~~~si~~~l~~~~~~~d~vl~ 82 (210)
++-.-++-.++++.+-..--+| +|+++.+. ....+.++++|+++....... + ....+...++..+ .|+++
T Consensus 8 g~Gsn~~al~~~~~~~~l~~~i~~visn~~~-~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~--~Dliv- 83 (207)
T PLN02331 8 GGGSNFRAIHDACLDGRVNGDVVVVVTNKPG-CGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAG--VDFVL- 83 (207)
T ss_pred CCChhHHHHHHHHHcCCCCeEEEEEEEeCCC-ChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhcC--CCEEE-
Confidence 4455667778877655422344 44445443 345677888888765432211 1 1234555565554 56644
Q ss_pred EeCCCCCCCHHHHHHH
Q 028320 83 HDSARPLVLSKDVQKV 98 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~~ 98 (210)
+.+=+-+++++.++..
T Consensus 84 ~agy~~il~~~~l~~~ 99 (207)
T PLN02331 84 LAGYLKLIPVELVRAY 99 (207)
T ss_pred EeCcchhCCHHHHhhC
Confidence 4466677888777644
No 245
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=23.96 E-value=2.1e+02 Score=18.51 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=45.1
Q ss_pred CCeehHHHHHHHHhc---CCCCCeEEEEeCCCChHHH--HHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEE
Q 028320 9 LGQPIALYSFYTFSR---MVEVKEIVVVCDPSYSDIF--EETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIH 83 (210)
Q Consensus 9 ~gkpli~~~i~~~~~---~~~~~~ivVv~~~~~~~~i--~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~ 83 (210)
.|+-=.+-.+.-+.+ ....+.++|+.+....+.+ ..++...+.++.++.+ +...++...|+... ..-++++
T Consensus 4 ~G~dRyeTs~~va~~~~~~~~~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~~--~l~~~~~~~l~~~~--~~~v~ii 79 (92)
T PF04122_consen 4 SGADRYETSAKVAKKFYPDNKSDKVYIASGDNFADALSASPLAAKNNAPILLVNN--SLPSSVKAFLKSLN--IKKVYII 79 (92)
T ss_pred CCCCHHHHHHHHHHHhcccCCCCEEEEEeCcchhhhhhhHHHHHhcCCeEEEECC--CCCHHHHHHHHHcC--CCEEEEE
Confidence 344444444444433 2246889998887644433 2344455667777762 22356666776653 3444444
Q ss_pred eCCCCCCCHHHH
Q 028320 84 DSARPLVLSKDV 95 (210)
Q Consensus 84 ~~d~Pli~~~~i 95 (210)
|...-++.+..
T Consensus 80 -Gg~~~is~~v~ 90 (92)
T PF04122_consen 80 -GGEGAISDSVE 90 (92)
T ss_pred -CCCCccCHHHh
Confidence 66666666554
No 246
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=23.93 E-value=4.4e+02 Score=22.19 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCH
Q 028320 14 ALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLS 92 (210)
Q Consensus 14 i~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~ 92 (210)
=..+++.+.+....++++|+..+. +..++.+.. .+..+....-+.....++...++. +|.|+.+.+ |+...
T Consensus 10 G~~~~~~L~~~~~~~~v~va~r~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~----~dvVin~~g--p~~~~ 81 (386)
T PF03435_consen 10 GSAIARLLARRGPFEEVTVADRNP--EKAERLAEKLLGDRVEAVQVDVNDPESLAELLRG----CDVVINCAG--PFFGE 81 (386)
T ss_dssp HHHHHHHHHCTTCE-EEEEEESSH--HHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTT----SSEEEE-SS--GGGHH
T ss_pred HHHHHHHHhcCCCCCcEEEEECCH--HHHHHHHhhccccceeEEEEecCCHHHHHHHHhc----CCEEEECCc--cchhH
Confidence 345666676665444666654443 344555543 334455443222223445444433 567666554 66666
Q ss_pred HHHHHHHHH
Q 028320 93 KDVQKVLMD 101 (210)
Q Consensus 93 ~~i~~~i~~ 101 (210)
..++.+++.
T Consensus 82 ~v~~~~i~~ 90 (386)
T PF03435_consen 82 PVARACIEA 90 (386)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666653
No 247
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=23.70 E-value=3.6e+02 Score=21.12 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=36.5
Q ss_pred eEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHH
Q 028320 29 EIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMD 101 (210)
Q Consensus 29 ~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~ 101 (210)
+|.||-++..+ ..+...+...|..+..+..+. .|+..+....| +++++.-+|-.+.-.+-+-+..
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~-------~a~~~~~~~~d-lviLD~~lP~~dG~~~~~~iR~ 67 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGE-------EALEAAREQPD-LVLLDLMLPDLDGLELCRRLRA 67 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHH-------HHHHHHhcCCC-EEEEECCCCCCCHHHHHHHHHh
Confidence 46666666554 344555556666666655432 33333331134 4668888888877666555543
No 248
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=23.62 E-value=1.6e+02 Score=24.37 Aligned_cols=58 Identities=7% Similarity=-0.021 Sum_probs=37.8
Q ss_pred CCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccC--CCCEEEEEeCCCC
Q 028320 26 EVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF--NSELVCIHDSARP 88 (210)
Q Consensus 26 ~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~--~~d~vl~~~~d~P 88 (210)
.+|+++-|.+++.+...++++++.|.- + | .+....+..|++..+. ....|+++.||.-
T Consensus 235 ~iD~v~~V~d~~A~~~~r~La~~eGil---v-G-~SsGA~~~aa~~~a~~~~~g~~IVti~pD~G 294 (300)
T COG0031 235 LIDEVIRVSDEEAIATARRLAREEGLL---V-G-ISSGAALAAALKLAKELPAGKTIVTILPDSG 294 (300)
T ss_pred cCceEEEECHHHHHHHHHHHHHHhCee---e-c-ccHHHHHHHHHHHHHhcCCCCeEEEEECCCc
Confidence 479999999988877778888776622 2 3 3334556666666542 2345666777764
No 249
>PRK08064 cystathionine beta-lyase; Provisional
Probab=23.56 E-value=4.6e+02 Score=22.28 Aligned_cols=91 Identities=15% Similarity=0.224 Sum_probs=53.3
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCCC--hHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCC
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPSY--SDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSA 86 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~~--~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d 86 (210)
.|-..|..++. +.+.+ |+|++....-. .......++.+|+++.++.-.. .+.+.. .+.++...|++..+.
T Consensus 77 sG~~ai~~~l~-~l~~G--d~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d--~~~l~~---~l~~~tklV~l~~p~ 148 (390)
T PRK08064 77 SGMAAISTAFL-LLSKG--DHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTN--LEEVAQ---NIKPNTKLFYVETPS 148 (390)
T ss_pred CHHHHHHHHHH-HhCCC--CEEEEccCccchHHHHHHHHHHHcCCEEEEECCCC--HHHHHH---hcCCCceEEEEECCC
Confidence 34444555553 33332 56665433221 1223345566787777765421 333333 333346788888899
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 028320 87 RPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 87 ~Pli~~~~i~~~i~~~~~~~~ 107 (210)
.|.-....++.+.+..++.+.
T Consensus 149 NptG~~~dl~~I~~la~~~g~ 169 (390)
T PRK08064 149 NPLLKVTDIRGVVKLAKAIGC 169 (390)
T ss_pred CCCcEeccHHHHHHHHHHcCC
Confidence 999988888888888777654
No 250
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=23.41 E-value=2.3e+02 Score=25.19 Aligned_cols=72 Identities=8% Similarity=0.144 Sum_probs=40.3
Q ss_pred CCeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHH-HHHHHHH-----HcccCCCCEEEEEeCCCCCCCHHHHHHH
Q 028320 27 VKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQ-DSVYSGL-----QEVDFNSELVCIHDSARPLVLSKDVQKV 98 (210)
Q Consensus 27 ~~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~-~si~~~l-----~~~~~~~d~vl~~~~d~Pli~~~~i~~~ 98 (210)
-.+.++++|.-.+ ..+...++.+|..|.++.....+. .+...|. ..+-..+|+|+.+.++..+++.+.+..|
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~iI~~e~~~~M 331 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKDIITLEHMRRM 331 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCcccccCHHHHhcc
Confidence 3567777788766 455666667777765543222111 1111111 1111247999988887777777666443
No 251
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=23.31 E-value=3.6e+02 Score=23.48 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=42.5
Q ss_pred HHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 41 IFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 41 ~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
.+.+...++|+...++...+ ...+. ..++++.+.|++=.+..|++..-+|..+.+..+.+|.
T Consensus 132 ~l~~~~~~~gie~~~vd~~~--~~~~~---~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~ 193 (409)
T KOG0053|consen 132 ILRKFLPKFGGEGDFVDVDD--LKKIL---KAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGF 193 (409)
T ss_pred HHHHHHHHhCceeeeechhh--HHHHH---HhhccCceEEEEECCCCCccccccHHHHHHHHhhCCC
Confidence 44555566676666654321 22233 3334347889999999999999999999998887765
No 252
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=23.24 E-value=5.1e+02 Score=22.64 Aligned_cols=92 Identities=13% Similarity=0.174 Sum_probs=55.7
Q ss_pred CeehHHHHHHHHhcCCCCCeEEEEeCCCC--hHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCC
Q 028320 10 GQPIALYSFYTFSRMVEVKEIVVVCDPSY--SDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSAR 87 (210)
Q Consensus 10 gkpli~~~i~~~~~~~~~~~ivVv~~~~~--~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~ 87 (210)
|-.-|.-++.++.+.+ |+|++....-. ...+...++.+|+.+.++....+ .+.+..++ .++...|++.....
T Consensus 85 G~aAi~~al~all~~G--D~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d-~~~l~~~I---~~~Tk~I~~e~pgn 158 (432)
T PRK06702 85 GQAAIMLAVLNICSSG--DHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLT-ADEIVALA---NDKTKLVYAESLGN 158 (432)
T ss_pred HHHHHHHHHHHhcCCC--CEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHhC---CcCCeEEEEEcCCC
Confidence 3444555666665443 66665433211 01223335678888888754211 23344443 33467788888889
Q ss_pred CCCCHHHHHHHHHHHHhcCC
Q 028320 88 PLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 88 Pli~~~~i~~~i~~~~~~~~ 107 (210)
|....-+|+.+.+..++.+.
T Consensus 159 P~~~v~Di~~I~~iA~~~gi 178 (432)
T PRK06702 159 PAMNVLNFKEFSDAAKELEV 178 (432)
T ss_pred ccccccCHHHHHHHHHHcCC
Confidence 99888889999988887765
No 253
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=23.22 E-value=3.7e+02 Score=21.09 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=29.9
Q ss_pred HHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhh
Q 028320 168 VSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 204 (210)
Q Consensus 168 ~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~ 204 (210)
..+.+.++.+..+..+.+..+++-+|.|+..+-..+.
T Consensus 159 l~L~rKYd~P~VISS~A~s~~~lRsPRdl~aL~~~iG 195 (216)
T PRK03892 159 WQLVNKYKVPRFITSSAESKWEVRGPRDLMSLGINIG 195 (216)
T ss_pred HHHHHHcCCCEEEecCcchhccCCCHHHHHHHHHHhC
Confidence 5667778888877777788899999999988777654
No 254
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=23.20 E-value=2e+02 Score=19.06 Aligned_cols=38 Identities=8% Similarity=0.186 Sum_probs=29.5
Q ss_pred CccceecCCeehHHHHHHHHhcCC-CCCeEEEEeCCCCh
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMV-EVKEIVVVCDPSYS 39 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~-~~~~ivVv~~~~~~ 39 (210)
+++..-+|.||...|++..+-+.. +.+++++-..-..|
T Consensus 3 ~envV~vG~KPvmNYVlAvlt~fn~g~~eViiKARGraI 41 (91)
T COG1581 3 EENVVLVGKKPVMNYVLAVLTQFNEGADEVIIKARGRAI 41 (91)
T ss_pred CccEEEEcCcchHHHHHHHHHHHHcCCCEEEEEecchhh
Confidence 467788999999999999876533 37888887776655
No 255
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=22.60 E-value=3.5e+02 Score=20.60 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=35.6
Q ss_pred HHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCC-CCHHHHHHHHHHHHhcCC
Q 028320 42 FEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPL-VLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 42 i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pl-i~~~~i~~~i~~~~~~~~ 107 (210)
+..++++.++.-.++.|-.+-......+..+....++.+++-+|...+ .+++.-+..++.+...++
T Consensus 133 L~~~L~~~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~~~~~~~~~~al~~~~~~~~ 199 (212)
T PRK11609 133 LDDWLREHGITELIVMGLATDYCVKFTVLDALALGYQVNVITDGCRGVNLQPQDSAHAFMEMSAAGA 199 (212)
T ss_pred HHHHHHHcCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccCCCCCCchhHHHHHHHHHHCCC
Confidence 344455555543345453332222334444444346777778877776 466666666666655443
No 256
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=22.49 E-value=4.8e+02 Score=22.09 Aligned_cols=59 Identities=7% Similarity=0.175 Sum_probs=38.5
Q ss_pred CeEEEEeCCCChHHHHHHHhhcCCcEEEecC---CccHHHHHHHHHHcccCCCCEEEEEeCCCC
Q 028320 28 KEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKERQDSVYSGLQEVDFNSELVCIHDSARP 88 (210)
Q Consensus 28 ~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~---~~~~~~si~~~l~~~~~~~d~vl~~~~d~P 88 (210)
|.++|+.--.+-....+.++++|++|..++- +.-..+.+..+|.. ++...|+++++|.-
T Consensus 93 d~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsq--h~p~~vfv~hgdsS 154 (385)
T KOG2862|consen 93 DNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQ--HKPKAVFVTHGDSS 154 (385)
T ss_pred CeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHh--cCCceEEEEecCcc
Confidence 6666665544434566778889998887753 22235667777766 34567888888764
No 257
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=22.27 E-value=4.4e+02 Score=21.58 Aligned_cols=79 Identities=8% Similarity=0.151 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-CCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCC-H
Q 028320 15 LYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVL-S 92 (210)
Q Consensus 15 ~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~-~ 92 (210)
.+.++.++.+. ++++.+. ...+.+++.|+++..++. ........+..-+..+....+..++-|+-+|.|+ |
T Consensus 22 ~Ral~~L~~~D-----~iaaEDT--R~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~valVSDAG~P~ISDP 94 (275)
T COG0313 22 LRALEVLKEVD-----VIAAEDT--RVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDP 94 (275)
T ss_pred HHHHHHHhhCC-----EEEEecc--HHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHHhcCCeEEEEecCCCCcccCc
Confidence 45666666443 4444443 346788888887543322 1111122233334444433478999999999995 3
Q ss_pred --HHHHHHHH
Q 028320 93 --KDVQKVLM 100 (210)
Q Consensus 93 --~~i~~~i~ 100 (210)
..++.+.+
T Consensus 95 G~~LV~~a~~ 104 (275)
T COG0313 95 GYELVRAARE 104 (275)
T ss_pred cHHHHHHHHH
Confidence 55555554
No 258
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=22.27 E-value=1e+02 Score=22.67 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=7.3
Q ss_pred CeehHHHHHHHH
Q 028320 10 GQPIALYSFYTF 21 (210)
Q Consensus 10 gkpli~~~i~~~ 21 (210)
|-||..++-+++
T Consensus 63 ~SPL~~~t~~q~ 74 (159)
T cd03411 63 GSPLNEITRAQA 74 (159)
T ss_pred CCccHHHHHHHH
Confidence 466666666554
No 259
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=22.16 E-value=4.9e+02 Score=22.08 Aligned_cols=80 Identities=10% Similarity=0.085 Sum_probs=49.0
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCCC-----hHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHccc-CCCCEE
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPSY-----SDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD-FNSELV 80 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~~-----~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~-~~~d~v 80 (210)
-|+-.+.+.-+.+.+.+ ..+++|+++..- .+.+.+.+++.+..+.+..+ .....+.+..+++.+. .+.|.|
T Consensus 13 ~G~g~l~~l~~~~~~~g-~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~I 91 (382)
T PRK10624 13 FGRGAIGALTDEVKRRG-FKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYL 91 (382)
T ss_pred ECcCHHHHHHHHHHhcC-CCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEE
Confidence 36667888777776654 578999988641 23455566666665544332 1223566777776664 357888
Q ss_pred EEEeCCCCC
Q 028320 81 CIHDSARPL 89 (210)
Q Consensus 81 l~~~~d~Pl 89 (210)
+-+-|=+++
T Consensus 92 IaiGGGS~i 100 (382)
T PRK10624 92 IAIGGGSPQ 100 (382)
T ss_pred EEeCChHHH
Confidence 866664443
No 260
>PLN02926 histidinol dehydrogenase
Probab=22.08 E-value=3.4e+02 Score=23.83 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=23.9
Q ss_pred ehHHHHHHHHh--cCCCCCeEEEEeCCCC---h-HHHHHHHhhcCCc
Q 028320 12 PIALYSFYTFS--RMVEVKEIVVVCDPSY---S-DIFEETKEKINVD 52 (210)
Q Consensus 12 pli~~~i~~~~--~~~~~~~ivVv~~~~~---~-~~i~~~~~~~~~~ 52 (210)
|+...++=.+. +..++.+|+++|++.. + ..+.-.++-.|++
T Consensus 134 ~ypStvLM~aiPAkvAGV~~Iv~~TPp~~~g~i~p~iL~AA~~~Gv~ 180 (431)
T PLN02926 134 VLPSTALMLAVPAQIAGCKTVVLATPPRKDGSICPEVLYCAKKAGVT 180 (431)
T ss_pred CccHHHHHhhcchhhcCCCeEEEEECCCcCCCCCHHHHHHHHHcCCC
Confidence 77777766643 2235889999998742 2 3343344444543
No 261
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=22.07 E-value=1.4e+02 Score=20.17 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=21.7
Q ss_pred ecCCeehHHHHHHHHhcCCCCCeEEEEeCC
Q 028320 7 PLLGQPIALYSFYTFSRMVEVKEIVVVCDP 36 (210)
Q Consensus 7 ~i~gkpli~~~i~~~~~~~~~~~ivVv~~~ 36 (210)
.++|+|+..++++.+.+.+ +....|.-+.
T Consensus 15 ~~~g~~l~~~ll~~~~~~g-i~GaTV~rgi 43 (101)
T PF02641_consen 15 RWGGKPLYEWLLERAREAG-IAGATVFRGI 43 (101)
T ss_dssp EETTEEHHHHHHHHHHHTT--SEEEEEE-S
T ss_pred ccCceEHHHHHHHHHHHCC-CCeEEEEcce
Confidence 4689999999999999975 6666665443
No 262
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=22.06 E-value=4.8e+02 Score=21.95 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=48.3
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCC-----ChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHccc-CCCCEE
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPS-----YSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD-FNSELV 80 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~-----~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~-~~~d~v 80 (210)
-|+-.+..+-+.+.+.+ ..+++|+++.. ..+.+.+.+++.|..+....+ .....+.+..+++.++ .+.|.|
T Consensus 7 ~G~g~~~~l~~~l~~~g-~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~I 85 (370)
T cd08192 7 FGAGAIKELPAECAELG-IKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGV 85 (370)
T ss_pred ECcCHHHHHHHHHHHcC-CCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 46667777777776654 57899998864 123445555555555443322 2334566777777664 357888
Q ss_pred EEEeCCCCC
Q 028320 81 CIHDSARPL 89 (210)
Q Consensus 81 l~~~~d~Pl 89 (210)
+-+-|=.++
T Consensus 86 IaiGGGSvi 94 (370)
T cd08192 86 IAFGGGSAL 94 (370)
T ss_pred EEeCCchHH
Confidence 877665544
No 263
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=22.03 E-value=89 Score=22.82 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=24.3
Q ss_pred CeEEEEeCCCCh-HHHHHHHhhcCC-cEEEec-----CCccHHHHHHHHHHcccC-CCCEEE
Q 028320 28 KEIVVVCDPSYS-DIFEETKEKINV-DLKFSL-----PGKERQDSVYSGLQEVDF-NSELVC 81 (210)
Q Consensus 28 ~~ivVv~~~~~~-~~i~~~~~~~~~-~v~~~~-----~~~~~~~si~~~l~~~~~-~~d~vl 81 (210)
++|+|++..+.- +.+.+.+..++. ++.... -+-+|+.++..||.++.. ++|.|+
T Consensus 36 kkIvV~t~N~kKf~vi~~il~~~~~~~i~~l~i~Tn~aDlTrmPA~~K~LmavD~~dADlvI 97 (154)
T PF11576_consen 36 KKIVVATNNEKKFKVINDILSKFNLPEIEMLDIPTNSADLTRMPALSKALMAVDISDADLVI 97 (154)
T ss_dssp S-EEE----HHHHHHHHHHHHHTT----EE--S--GGGGGSSSHHHHHHHHHHHHH--SEEE
T ss_pred ceEEEecCCchHhHHHHHHHHHhcCCccceeeccCcchhcccCcHHHhHHHheeccCCcEEE
Confidence 577777776642 445666666653 232211 134556777777777652 456654
No 264
>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]
Probab=21.97 E-value=3.1e+02 Score=21.38 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=7.3
Q ss_pred CCeEEEEeCCCCh
Q 028320 27 VKEIVVVCDPSYS 39 (210)
Q Consensus 27 ~~~ivVv~~~~~~ 39 (210)
..+++|+.+++.+
T Consensus 82 ~kkvFvv~ghd~i 94 (233)
T COG4271 82 LKKVFVVSGHDAI 94 (233)
T ss_pred ceeEEEEeccHHH
Confidence 3456666666543
No 265
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=21.87 E-value=4.9e+02 Score=21.98 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=52.3
Q ss_pred cCCeehHHHHHHHHhcCCCCCeEEEEeCCCC-----hHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHccc-CCCCE
Q 028320 8 LLGQPIALYSFYTFSRMVEVKEIVVVCDPSY-----SDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD-FNSEL 79 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~-----~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~-~~~d~ 79 (210)
+-|+-.+.+.-+.+.+.+ ..+++|+++..- .+.+.+.+++.+..+....+ .....+.+..+.+.+. .+.|.
T Consensus 8 ~~G~g~l~~l~~~l~~~g-~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~ 86 (374)
T cd08189 8 FVGSGSLAQLPAAISQLG-VKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDA 86 (374)
T ss_pred EECcCHHHHHHHHHHhcC-CCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCE
Confidence 346667888777776654 579999998742 13344455555655443332 2234666777777764 35788
Q ss_pred EEEEeCCCCCCCHHHH
Q 028320 80 VCIHDSARPLVLSKDV 95 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i 95 (210)
|+-+-|-.++=....+
T Consensus 87 IIaiGGGS~~D~aK~i 102 (374)
T cd08189 87 ILAVGGGSVIDCAKAI 102 (374)
T ss_pred EEEeCCccHHHHHHHH
Confidence 8877665554444333
No 266
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=21.70 E-value=5.3e+02 Score=22.26 Aligned_cols=91 Identities=13% Similarity=0.170 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--Cc-cHHHHHHHHHHcccCCCCEEEEEeCCCCCC
Q 028320 14 ALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GK-ERQDSVYSGLQEVDFNSELVCIHDSARPLV 90 (210)
Q Consensus 14 i~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~-~~~~si~~~l~~~~~~~d~vl~~~~d~Pli 90 (210)
++-++.++.+-+ |+++|+..-.-=..+.++++.||.++..+.- ++ -..+.+..+|+.- ++.+.|.++.++.+-=
T Consensus 69 mEAav~sl~~pg--dkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~-~~~~~V~~vH~ETSTG 145 (383)
T COG0075 69 MEAAVASLVEPG--DKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKD-PDIKAVAVVHNETSTG 145 (383)
T ss_pred HHHHHHhccCCC--CeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcC-CCccEEEEEeccCccc
Confidence 444444444322 5666655443115678889999987665432 22 2267788888742 3467777777776655
Q ss_pred CHHHHHHHHHHHHhcCC
Q 028320 91 LSKDVQKVLMDALRVGA 107 (210)
Q Consensus 91 ~~~~i~~~i~~~~~~~~ 107 (210)
--+.++.+.+..+++++
T Consensus 146 vlnpl~~I~~~~k~~g~ 162 (383)
T COG0075 146 VLNPLKEIAKAAKEHGA 162 (383)
T ss_pred ccCcHHHHHHHHHHcCC
Confidence 45567777777777765
No 267
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=21.59 E-value=3.9e+02 Score=20.70 Aligned_cols=29 Identities=3% Similarity=-0.023 Sum_probs=23.9
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~ 104 (210)
+.++++++.-|.=+++..-+.++++.+..
T Consensus 54 ~~~ylvflHqDv~i~~~~~l~~il~~~~~ 82 (217)
T PF13712_consen 54 KAKYLVFLHQDVFIINENWLEDILEIFEE 82 (217)
T ss_dssp -SSEEEEEETTEE-SSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCeEEcchhHHHHHHHHHhh
Confidence 47898888899999999999999999843
No 268
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=21.51 E-value=5.1e+02 Score=22.00 Aligned_cols=91 Identities=14% Similarity=0.250 Sum_probs=52.6
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCCChH---HHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeC
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD---IFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDS 85 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~---~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~ 85 (210)
+|..-+..++.++.+.+ |+|++. ++..-. .+...++.+|+++.++.... .+.+..+ +.++...|++-.+
T Consensus 73 sG~~Ai~~al~all~~G--D~Vl~~-~~~y~~t~~~~~~~~~~~gi~v~~~d~~~--~e~l~~~---i~~~tklV~lesp 144 (377)
T TIGR01324 73 SGLAAVTNSILAFVKAG--DHVLMV-DSAYEPTRYFCDIVLKRMGVDITYYDPLI--GEDIATL---IQPNTKVLFLEAP 144 (377)
T ss_pred cHHHHHHHHHHHhcCCC--CEEEEc-CCCcHHHHHHHHHHHHhcCcEEEEECCCC--HHHHHHh---cCCCceEEEEECC
Confidence 34444555666664443 565543 333211 11223455676666553221 1233333 3334567787778
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 028320 86 ARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 86 d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
..|......++++.+.+++++.
T Consensus 145 ~Np~g~~~dl~~I~~la~~~g~ 166 (377)
T TIGR01324 145 SSITFEIQDIPAIAKAARNPGI 166 (377)
T ss_pred CCCCCcHHHHHHHHHHHHHcCC
Confidence 8999999999999998887765
No 269
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=21.43 E-value=5e+02 Score=21.88 Aligned_cols=82 Identities=7% Similarity=0.021 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccC----CCC--EEEEEeCCC
Q 028320 15 LYSFYTFSRMVEVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF----NSE--LVCIHDSAR 87 (210)
Q Consensus 15 ~~~i~~~~~~~~~~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~----~~d--~vl~~~~d~ 87 (210)
+.+++...+.. -|.|+++.|+... ...++.++++|+.+.-. ||.+|.+........+.+ .++ -++++.|
T Consensus 65 es~~~eI~~ln-pd~VLIIGGp~AVs~~yE~~Lks~GitV~Ri-gG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~G-- 140 (337)
T COG2247 65 ESVLDEIIELN-PDLVLIIGGPIAVSPNYENALKSLGITVKRI-GGANRYETAEKVAKFFREDYPNAFKNVKVVVVYG-- 140 (337)
T ss_pred HHHHHHHHhhC-CceEEEECCCCcCChhHHHHHHhCCcEEEEe-cCcchHHHHHHHHHHHHhhchhhhcCeEEEEEec--
Confidence 34555555554 6899999998866 45567788899876544 557775544444444421 123 4555555
Q ss_pred CCCCHHHHHHHHHHHHh
Q 028320 88 PLVLSKDVQKVLMDALR 104 (210)
Q Consensus 88 Pli~~~~i~~~i~~~~~ 104 (210)
+--++ .+.+.+++
T Consensus 141 -wDy~~---~~~e~~k~ 153 (337)
T COG2247 141 -WDYAD---ALMELMKE 153 (337)
T ss_pred -cccHH---HHHHHHhc
Confidence 55444 44455555
No 270
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=21.40 E-value=2.9e+02 Score=20.31 Aligned_cols=60 Identities=13% Similarity=0.029 Sum_probs=29.9
Q ss_pred HHHHHHcccC-CCCEEEEEeC----CCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCC
Q 028320 66 VYSGLQEVDF-NSELVCIHDS----ARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSES 125 (210)
Q Consensus 66 i~~~l~~~~~-~~d~vl~~~~----d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 125 (210)
....+..+.+ +..+++-++. ..+..+.+.+..+++.+..+|.++.+.-+.+.+|-...+|
T Consensus 16 f~eVi~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~mwVTF~dg 80 (146)
T PF08952_consen 16 FEEVISSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDTMWVTFRDG 80 (146)
T ss_dssp ----S-----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTCEEEEESSC
T ss_pred HHHHHHhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCeEEEEECcc
Confidence 3444444443 3333333433 1256688999999999999998877766666555433334
No 271
>PRK08173 DNA topoisomerase III; Validated
Probab=21.22 E-value=3.4e+02 Score=26.20 Aligned_cols=66 Identities=9% Similarity=0.200 Sum_probs=37.6
Q ss_pred cCCeehHHHHHHHHhcCCCCCeEEEEeCCCCh-HHHHH-HHhhcC--CcEE--EecCCccHHHHHHHHHHcccC
Q 028320 8 LLGQPIALYSFYTFSRMVEVKEIVVVCDPSYS-DIFEE-TKEKIN--VDLK--FSLPGKERQDSVYSGLQEVDF 75 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~-~~i~~-~~~~~~--~~v~--~~~~~~~~~~si~~~l~~~~~ 75 (210)
..++.=.-.+|..+.+...+++||++||++.. +.|.. ++.-.+ .++. |...-+ -.+|+.|+..+.+
T Consensus 78 ~~~~~~q~~~ik~l~k~~~~d~Ii~AtD~dREGElI~~~I~~~~~~~kpv~Rlw~sslt--~~aI~~a~~nl~~ 149 (862)
T PRK08173 78 IAKTESRLKVLTKLIKRKDVTRLINACDAGREGELIFRLIAQHAKAKKPVKRLWLQSMT--PQAIRDGFANLRS 149 (862)
T ss_pred cccHHHHHHHHHHHHhhCCCCEEEECCCCChhHHHHHHHHHHHhCCCCCeEEEEEccCC--HHHHHHHHhcCCC
Confidence 34443345567777654468999999998854 23322 222223 2332 333322 4678888888863
No 272
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=21.06 E-value=5.1e+02 Score=21.87 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=48.3
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCC-----ChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHccc-CCCCEE
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPS-----YSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVD-FNSELV 80 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~-----~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~-~~~d~v 80 (210)
-|+-.+.+.-+.+.+.+ .++++|+++.. ..+.+.+.+++.+..+....+ .....+.+..+++.+. .+.|.|
T Consensus 9 ~G~g~l~~l~~~l~~~~-~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~I 87 (376)
T cd08193 9 FGAGSLARLGELLAALG-AKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGV 87 (376)
T ss_pred ECcCHHHHHHHHHHHcC-CCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEE
Confidence 45566777777666543 58899998874 123445555555655543322 2234666777777764 357888
Q ss_pred EEEeCCCCC
Q 028320 81 CIHDSARPL 89 (210)
Q Consensus 81 l~~~~d~Pl 89 (210)
+-+-|=.++
T Consensus 88 IaiGGGs~i 96 (376)
T cd08193 88 IGFGGGSSM 96 (376)
T ss_pred EEeCCchHH
Confidence 877665544
No 273
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=21.05 E-value=3.2e+02 Score=19.51 Aligned_cols=70 Identities=13% Similarity=0.184 Sum_probs=37.0
Q ss_pred CCeEEEEeCCCChHHHHHHHhhcCC-cEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHH
Q 028320 27 VKEIVVVCDPSYSDIFEETKEKINV-DLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDAL 103 (210)
Q Consensus 27 ~~~ivVv~~~~~~~~i~~~~~~~~~-~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~ 103 (210)
.+.++||=|.++.. .+++++. .+-.+.|..........=+..+...-+.++++|+|.+ -+-|++.+..+-
T Consensus 9 ~~~vIVVEGK~D~~----~l~~~~~~~~i~~~g~~i~~~~~ie~i~~~~~~k~VIILTD~D~~---Ge~Irk~l~~~l 79 (127)
T COG1658 9 LKEVIVVEGKDDTA----SLKRLGDAGVIITNGSAINSLETIELIKKAQKYKGVIILTDPDRK---GERIRKKLKEYL 79 (127)
T ss_pred cCceEEEeCCcHHH----HHHHhcCCceEEEcCCccchHHHHHHHHHhhccCCEEEEeCCCcc---hHHHHHHHHHHh
Confidence 46888888887643 3344442 3333434322212222222222223467888887764 677877776553
No 274
>KOG2892 consensus Porphobilinogen deaminase [Coenzyme transport and metabolism]
Probab=20.93 E-value=74 Score=26.06 Aligned_cols=31 Identities=13% Similarity=-0.009 Sum_probs=25.8
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVV 32 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivV 32 (210)
.|+|.+|+||.|+..-+|.+.-.+.+|-+|=
T Consensus 52 ~k~L~~ig~KsLfTkELE~aL~~~~~divVH 82 (320)
T KOG2892|consen 52 SKPLAKIGGKSLFTKELEDALINGHVDIVVH 82 (320)
T ss_pred hchHhhhcccchhHHHHHHHHhcCCccEEEE
Confidence 5899999999999999999988776554443
No 275
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=20.91 E-value=2.2e+02 Score=24.59 Aligned_cols=68 Identities=18% Similarity=0.042 Sum_probs=42.1
Q ss_pred CCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccC--CCCEEEEEeCCCCCCCHHHHHHHH
Q 028320 27 VKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF--NSELVCIHDSARPLVLSKDVQKVL 99 (210)
Q Consensus 27 ~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~--~~d~vl~~~~d~Pli~~~~i~~~i 99 (210)
.++++.|++.+.++.++.+++..|+-+ + .+..+++..+++..+. +.+.|+++.+++-..+.+.+.+.+
T Consensus 328 ~~~~v~VtD~eal~a~~~La~~eGIi~----~-~~sa~alA~a~~~a~~l~~~~~VVv~lsG~G~kd~~~~~~~~ 397 (402)
T PRK13028 328 RVEYVTATDEEALDAFFLLSRTEGIIP----A-LESSHAVAYAIKLAPELSKDETILVNLSGRGDKDIDYVAEML 397 (402)
T ss_pred CcEEEEECHHHHHHHHHHHHHhcCCee----c-cHHHHHHHHHHHhhhhcCCCCeEEEEECCCCccCHHHHHHHh
Confidence 467888887776566666666655332 2 2224555555544332 346777788888888888876644
No 276
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=20.89 E-value=4e+02 Score=20.52 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=37.6
Q ss_pred HHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028320 42 FEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV 109 (210)
Q Consensus 42 i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~ 109 (210)
+.+++++.++.-.++.|-.+-......+..+.......+++.+|...+ +++.-+..++.+...++.+
T Consensus 137 L~~~L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~g~~v~vv~Da~~~~-~~~~~~~al~~~~~~g~~v 203 (212)
T PTZ00331 137 LAQILKAHGVRRVFICGLAFDFCVLFTALDAVKLGFKVVVLEDATRAV-DPDAISKQRAELLEAGVIL 203 (212)
T ss_pred HHHHHHHCCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEeCcCccCC-CHHHHHHHHHHHHHCCCEE
Confidence 445666666654455553333222333444444345667777776654 6666777777776665433
No 277
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.72 E-value=5.7e+02 Score=22.29 Aligned_cols=92 Identities=18% Similarity=0.228 Sum_probs=54.2
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCCChH---HHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeC
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD---IFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDS 85 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~---~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~ 85 (210)
.|-.-+..++.++.+.+ ++|++.. ...-. .+...+.++|+.+.++... ...+.+..+ +.++...|++-..
T Consensus 92 SG~aAi~~al~all~~G--d~Vv~~~-~~y~~t~~~~~~~l~~~Gi~v~~vdd~-~d~e~l~~a---i~~~tklV~ie~~ 164 (436)
T PRK07812 92 SGQAAETFAILNLAGAG--DHIVSSP-RLYGGTYNLFHYTLPKLGIEVSFVEDP-DDLDAWRAA---VRPNTKAFFAETI 164 (436)
T ss_pred cHHHHHHHHHHHHhCCC--CEEEEeC-CcchHHHHHHHHHhhcCeEEEEEECCC-CCHHHHHHh---CCCCCeEEEEECC
Confidence 34445566666665543 5665543 22111 1223345567777676422 223444433 3334567788889
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 028320 86 ARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 86 d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
..|.....+++.+.+..++.+.
T Consensus 165 sNp~G~v~Dl~~I~~la~~~gi 186 (436)
T PRK07812 165 SNPQIDVLDIPGVAEVAHEAGV 186 (436)
T ss_pred CCCCCeecCHHHHHHHHHHcCC
Confidence 9999999999999988887764
No 278
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.69 E-value=2.5e+02 Score=25.44 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=36.8
Q ss_pred eehHHHHHHHHhcCCCCCeEEEEeCCC-Ch-HHHHHHHhhc----CCcEEEecCCccHHHHHHHHHHcccCCCCEEEEE
Q 028320 11 QPIALYSFYTFSRMVEVKEIVVVCDPS-YS-DIFEETKEKI----NVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIH 83 (210)
Q Consensus 11 kpli~~~i~~~~~~~~~~~ivVv~~~~-~~-~~i~~~~~~~----~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~ 83 (210)
.|||.|+.++=..-+.-..|.|.+.+. +. .+|...|+++ |..+..+.||.+. .+..+.|+..+++|+..
T Consensus 279 ~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk----~eQ~k~Lk~g~EivVaT 353 (731)
T KOG0339|consen 279 WPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSK----WEQSKELKEGAEIVVAT 353 (731)
T ss_pred HHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcH----HHHHHhhhcCCeEEEec
Confidence 488899988754332334555544443 22 3455556554 5555556665443 34444444346676644
No 279
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=20.36 E-value=4.7e+02 Score=25.35 Aligned_cols=80 Identities=14% Similarity=0.206 Sum_probs=46.4
Q ss_pred HHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHH----Hccc-CCCCEEEEEeCCCCCCC
Q 028320 17 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGL----QEVD-FNSELVCIHDSARPLVL 91 (210)
Q Consensus 17 ~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l----~~~~-~~~d~vl~~~~d~Pli~ 91 (210)
.+..+..++ + +++.||+++.+. -+.+++. +-+..++.+..+.+..-+ +..+ .+++++++|-.+.|=++
T Consensus 598 Av~~CrsAG-I-kvimVTgdhpiT-AkAiA~~----vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~~~~ 670 (1019)
T KOG0203|consen 598 AVGKCRSAG-I-KVIMVTGDHPIT-AKAIAKS----VGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELPDMS 670 (1019)
T ss_pred hhhhhhhhC-c-eEEEEecCccch-hhhhhhh----eeeecCCchhhhhhHHhcCCcccccCccccceEEEecccccccC
Confidence 455566554 3 555667766542 1333333 344444333333322211 2222 24688999999999999
Q ss_pred HHHHHHHHHHHH
Q 028320 92 SKDVQKVLMDAL 103 (210)
Q Consensus 92 ~~~i~~~i~~~~ 103 (210)
++.+++++....
T Consensus 671 ~~qld~il~nh~ 682 (1019)
T KOG0203|consen 671 SEQLDELLQNHQ 682 (1019)
T ss_pred HHHHHHHHHhCC
Confidence 999999997654
No 280
>PLN03013 cysteine synthase
Probab=20.23 E-value=3.4e+02 Score=23.75 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=31.5
Q ss_pred eEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCC
Q 028320 29 EIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLV 90 (210)
Q Consensus 29 ~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli 90 (210)
+.+|++++..-..-.+.++.+|+++..+.+......++..+.+...+..+.+++.+-+.|..
T Consensus 200 ~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n 261 (429)
T PLN03013 200 RLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPAN 261 (429)
T ss_pred CEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHH
Confidence 34444454432344567778898887775432222334344443332235666555455543
No 281
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.17 E-value=2.9e+02 Score=20.69 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCC--cEEEecC
Q 028320 15 LYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV--DLKFSLP 58 (210)
Q Consensus 15 ~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~--~v~~~~~ 58 (210)
-.-++.++. +.+|.|++++-.+. -.+..|.+.++. .+.++.+
T Consensus 68 i~~a~elks-KGVd~iicvSVnDp-Fv~~aW~k~~g~~~~V~f~aD 111 (171)
T KOG0541|consen 68 IEKADELKS-KGVDEIICVSVNDP-FVMKAWAKSLGANDHVKFVAD 111 (171)
T ss_pred HHHHHHHHh-cCCcEEEEEecCcH-HHHHHHHhhcCccceEEEEec
Confidence 334566655 67899888887775 345777777765 4666554
No 282
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=20.07 E-value=5.3e+02 Score=21.66 Aligned_cols=79 Identities=13% Similarity=0.144 Sum_probs=42.1
Q ss_pred CCCeEEEEeCCCC-----hHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCC--CCEEEEEeCCCCCCCHHHHHHH
Q 028320 26 EVKEIVVVCDPSY-----SDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN--SELVCIHDSARPLVLSKDVQKV 98 (210)
Q Consensus 26 ~~~~ivVv~~~~~-----~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~--~d~vl~~~~d~Pli~~~~i~~~ 98 (210)
...++.++..+.. ...+.+.++..|+.+.....-......+...|+.++.. .++| ++.+...+...+....+
T Consensus 131 ~w~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~d~~~~L~~lk~~~~~~vi-v~~~~~~~~~~~~~~~i 209 (382)
T cd06371 131 RWAHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVTSMGPDEKGAREALKKVRSADRVRVV-IMCMHSVLIGGEEQRLL 209 (382)
T ss_pred CCeEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEEEecCCHHHHHHHHHHHhcCCCcEEE-EEEeeccccCcHHHHHH
Confidence 4678888877654 23455556666655443211111123455566666532 2444 45566666665566667
Q ss_pred HHHHHhc
Q 028320 99 LMDALRV 105 (210)
Q Consensus 99 i~~~~~~ 105 (210)
+..+.+.
T Consensus 210 ~~qa~~~ 216 (382)
T cd06371 210 LETALEM 216 (382)
T ss_pred HHHHHHc
Confidence 6666553
Done!