Query 028320
Match_columns 210
No_of_seqs 113 out of 1189
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 15:52:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q80_A 2-C-methyl-D-erythritol 100.0 1.8E-39 6E-44 255.7 21.9 201 1-204 25-230 (231)
2 3f1c_A Putative 2-C-methyl-D-e 100.0 7.1E-36 2.4E-40 237.4 19.4 209 1-209 22-238 (246)
3 2yc3_A 2-C-methyl-D-erythritol 100.0 1.9E-31 6.5E-36 209.2 19.5 206 1-206 22-227 (228)
4 1vpa_A 2-C-methyl-D-erythritol 100.0 1.9E-30 6.6E-35 204.2 17.1 200 1-207 31-231 (234)
5 1i52_A 4-diphosphocytidyl-2-C- 100.0 3.6E-29 1.2E-33 197.2 20.4 205 1-208 25-232 (236)
6 2vsh_A TARI, 2-C-methyl-D-eryt 100.0 1E-28 3.5E-33 194.3 18.8 204 1-205 21-235 (236)
7 2xwl_A 2-C-methyl-D-erythritol 100.0 5.7E-28 2E-32 188.5 19.8 201 1-206 20-221 (223)
8 1vgw_A 4-diphosphocytidyl-2C-m 100.0 9.2E-28 3.1E-32 188.4 20.6 199 1-204 24-229 (231)
9 2px7_A 2-C-methyl-D-erythritol 100.0 7.3E-27 2.5E-31 184.3 19.4 194 2-208 43-236 (236)
10 1w55_A ISPD/ISPF bifunctional 99.9 6.7E-26 2.3E-30 189.1 12.3 185 1-204 21-205 (371)
11 4fcu_A 3-deoxy-manno-octuloson 99.9 1.1E-23 3.9E-28 167.5 15.5 201 2-207 17-252 (253)
12 1h7e_A 3-deoxy-manno-octuloson 99.9 3.7E-23 1.3E-27 163.5 15.9 200 2-207 18-241 (245)
13 3k8d_A 3-deoxy-manno-octuloson 99.9 5.8E-23 2E-27 164.4 16.2 198 2-204 33-264 (264)
14 1ezi_A CMP-N-acetylneuraminic 99.9 1.7E-24 5.7E-29 169.7 6.6 192 2-205 20-225 (228)
15 3tqd_A 3-deoxy-manno-octuloson 99.9 6.7E-22 2.3E-26 157.6 16.3 197 2-203 25-256 (256)
16 3oam_A 3-deoxy-manno-octuloson 99.9 1.9E-21 6.4E-26 154.8 16.3 201 2-207 18-251 (252)
17 4fce_A Bifunctional protein GL 99.9 1.6E-21 5.5E-26 167.1 16.4 202 1-206 26-245 (459)
18 2waw_A MOBA relate protein; un 99.9 3.1E-21 1E-25 147.6 14.9 175 1-205 21-197 (199)
19 2v0h_A Bifunctional protein GL 99.8 4.7E-20 1.6E-24 157.9 17.8 202 1-206 23-242 (456)
20 2wee_A MOBA-related protein; u 99.8 1.7E-20 5.8E-25 143.3 13.4 174 1-204 21-196 (197)
21 1hm9_A GLMU, UDP-N-acetylgluco 99.8 7.7E-20 2.6E-24 157.1 18.2 201 1-206 29-251 (468)
22 2y6p_A 3-deoxy-manno-octuloson 99.8 1.3E-19 4.4E-24 142.1 16.3 195 2-205 18-233 (234)
23 1qwj_A Cytidine monophospho-N- 99.8 4E-20 1.4E-24 145.0 13.1 192 2-208 19-225 (229)
24 3rsb_A Adenosylcobinamide-phos 99.8 7.9E-22 2.7E-26 150.9 1.7 111 1-116 17-138 (196)
25 1vic_A 3-deoxy-manno-octuloson 99.8 2.7E-18 9.1E-23 137.1 20.3 199 2-207 18-255 (262)
26 3d5n_A Q97W15_sulso; NESG, SSR 99.8 3.8E-19 1.3E-23 136.4 10.0 169 2-205 19-190 (197)
27 1lvw_A Glucose-1-phosphate thy 99.8 4E-18 1.4E-22 138.4 15.9 200 1-205 24-242 (295)
28 1fxo_A Glucose-1-phosphate thy 99.8 2.9E-18 9.9E-23 139.2 14.1 199 1-205 23-241 (293)
29 4ecm_A Glucose-1-phosphate thy 99.8 1.2E-17 4.2E-22 133.8 14.9 200 1-208 45-262 (269)
30 3ngw_A Molybdopterin-guanine d 99.8 4.6E-17 1.6E-21 125.8 16.5 170 1-208 16-197 (208)
31 1mc3_A Glucose-1-phosphate thy 99.7 1.5E-17 5.2E-22 135.1 10.1 198 1-205 24-242 (296)
32 3juk_A UDP-glucose pyrophospho 99.7 6.1E-17 2.1E-21 130.4 11.1 199 1-206 23-271 (281)
33 2pa4_A UTP-glucose-1-phosphate 99.7 1.7E-16 5.7E-21 130.4 13.8 200 1-204 33-281 (323)
34 1e5k_A Molybdopterin-guanine d 99.7 2E-16 7E-21 121.5 13.0 165 1-201 23-192 (201)
35 3st8_A Bifunctional protein GL 99.7 1.3E-15 4.4E-20 132.1 19.6 204 1-206 30-260 (501)
36 3pnn_A Conserved domain protei 99.7 7.3E-16 2.5E-20 125.6 14.8 200 2-207 22-293 (303)
37 4evw_A Nucleoside-diphosphate- 99.7 1.7E-15 5.8E-20 120.5 14.1 199 1-204 20-246 (255)
38 2dpw_A Hypothetical protein TT 99.7 8.6E-16 2.9E-20 120.5 11.9 86 1-100 22-107 (232)
39 2ux8_A Glucose-1-phosphate uri 99.6 1.5E-15 5.2E-20 123.2 12.3 197 1-204 35-278 (297)
40 1jyk_A LICC protein, CTP:phosp 99.6 1.7E-15 5.7E-20 120.5 11.6 193 1-206 46-253 (254)
41 2ggo_A 401AA long hypothetical 99.6 3.9E-16 1.3E-20 131.6 8.1 193 1-206 21-225 (401)
42 2e8b_A Probable molybdopterin- 99.6 2.5E-15 8.5E-20 115.4 11.1 89 1-99 30-120 (201)
43 2e3d_A UTP--glucose-1-phosphat 99.6 2.9E-15 1E-19 121.8 11.2 195 1-202 29-278 (302)
44 2qh5_A PMI, ALGA, mannose-6-ph 99.6 4E-14 1.4E-18 115.5 16.7 201 1-204 26-283 (308)
45 1tzf_A Glucose-1-phosphate cyt 99.6 3.8E-14 1.3E-18 112.4 14.2 195 1-206 23-251 (259)
46 3brk_X Glucose-1-phosphate ade 99.5 1.1E-13 3.7E-18 117.4 13.5 200 1-205 33-285 (420)
47 2xme_A CTP-inositol-1-phosphat 99.5 1.9E-14 6.6E-19 112.5 7.6 91 2-100 36-130 (232)
48 1yp2_A Glucose-1-phosphate ade 99.4 5.6E-12 1.9E-16 107.7 17.7 203 1-207 41-298 (451)
49 2x65_A Mannose-1-phosphate gua 99.4 2.3E-12 7.9E-17 106.3 13.9 100 1-101 23-124 (336)
50 2cu2_A Putative mannose-1-phos 99.3 6E-12 2E-16 103.8 8.9 196 1-201 24-267 (337)
51 2i5e_A Hypothetical protein MM 99.3 1.1E-10 3.8E-15 89.9 13.2 81 8-100 30-111 (211)
52 3cgx_A Putative nucleotide-dip 99.0 1.1E-08 3.9E-13 80.4 13.8 92 11-106 37-132 (242)
53 2i5k_A UTP--glucose-1-phosphat 97.6 0.00086 2.9E-08 57.6 12.0 114 1-116 110-265 (488)
54 2icy_A Probable UTP-glucose-1- 96.7 0.02 6.9E-07 48.9 11.4 55 1-55 97-159 (469)
55 1jv1_A Glcnac1P uridyltransfer 95.7 0.056 1.9E-06 46.6 9.5 47 1-48 120-180 (505)
56 1qg8_A Protein (spore coat pol 94.9 0.29 9.8E-06 37.3 10.4 94 8-105 10-116 (255)
57 3bcv_A Putative glycosyltransf 94.7 0.39 1.3E-05 36.1 10.6 96 8-107 14-114 (240)
58 3ckj_A Putative uncharacterize 94.6 0.32 1.1E-05 39.1 10.3 94 8-104 57-159 (329)
59 2oeg_A UTP-glucose-1-phosphate 94.4 0.076 2.6E-06 45.7 6.4 47 1-47 93-144 (505)
60 3oc9_A UDP-N-acetylglucosamine 93.7 0.79 2.7E-05 38.2 11.0 110 1-116 53-218 (405)
61 3f1y_A Mannosyl-3-phosphoglyce 93.5 0.6 2.1E-05 38.7 10.0 95 8-105 103-208 (387)
62 1xhb_A Polypeptide N-acetylgal 92.0 0.73 2.5E-05 38.8 8.8 96 9-107 39-144 (472)
63 4hg6_A Cellulose synthase subu 91.5 1.3 4.4E-05 40.3 10.3 94 9-105 150-266 (802)
64 2ffu_A Ppgalnact-2, polypeptid 89.9 1.3 4.4E-05 37.7 8.5 96 9-108 76-177 (501)
65 4fix_A UDP-galactofuranosyl tr 88.0 1.5 5.2E-05 38.9 7.7 98 8-106 189-297 (657)
66 2bo4_A Mannosylglycerate synth 87.8 5.1 0.00017 33.2 10.3 93 7-104 7-120 (397)
67 2d7i_A Polypeptide N-acetylgal 87.0 1.7 5.7E-05 37.8 7.2 95 9-107 122-226 (570)
68 2z86_A Chondroitin synthase; G 86.8 3.5 0.00012 35.9 9.3 96 8-107 102-204 (625)
69 2yqc_A UDP-N-acetylglucosamine 85.2 0.92 3.1E-05 38.8 4.6 47 1-48 121-183 (486)
70 2z86_A Chondroitin synthase; G 83.6 4.8 0.00016 35.0 8.6 94 8-105 384-482 (625)
71 1omz_A Alpha-1,4-N-acetylhexos 74.5 3.7 0.00013 32.6 4.5 93 11-107 40-136 (293)
72 3mmz_A Putative HAD family hyd 64.2 27 0.00091 24.7 7.0 65 17-88 47-112 (176)
73 2qip_A Protein of unknown func 62.5 15 0.0005 26.2 5.3 41 16-56 98-139 (165)
74 1fo8_A Alpha-1,3-mannosyl-glyc 59.2 35 0.0012 27.6 7.4 97 5-103 7-125 (343)
75 3kcq_A Phosphoribosylglycinami 58.0 56 0.0019 24.4 8.9 86 9-98 17-103 (215)
76 2zu9_A Mannosyl-3-phosphoglyce 57.5 80 0.0027 26.0 10.8 40 62-103 145-185 (394)
77 3l7i_A Teichoic acid biosynthe 57.3 2.2 7.6E-05 38.2 0.0 93 8-104 11-110 (729)
78 2ywr_A Phosphoribosylglycinami 56.2 60 0.002 24.2 8.3 85 9-97 10-100 (216)
79 1meo_A Phosophoribosylglycinam 50.1 75 0.0026 23.5 9.5 86 9-98 9-100 (209)
80 2r8e_A 3-deoxy-D-manno-octulos 49.1 68 0.0023 22.7 7.2 67 17-88 61-127 (188)
81 3auf_A Glycinamide ribonucleot 44.8 98 0.0033 23.3 9.9 86 9-98 31-122 (229)
82 3e8m_A Acylneuraminate cytidyl 44.8 71 0.0024 21.7 7.6 67 17-88 39-105 (164)
83 2p9j_A Hypothetical protein AQ 43.1 76 0.0026 21.5 7.7 69 15-88 42-110 (162)
84 1jkx_A GART;, phosphoribosylgl 41.2 1.1E+02 0.0037 22.7 10.0 86 9-98 9-100 (212)
85 1k1e_A Deoxy-D-mannose-octulos 40.3 93 0.0032 21.7 7.3 68 16-88 42-109 (180)
86 1o51_A Hypothetical protein TM 39.2 61 0.0021 21.6 5.0 26 7-33 25-50 (114)
87 3av3_A Phosphoribosylglycinami 37.9 1.2E+02 0.0041 22.4 9.8 85 9-97 12-102 (212)
88 3p9x_A Phosphoribosylglycinami 37.6 1.2E+02 0.0043 22.4 10.2 86 10-98 12-102 (211)
89 3gbc_A Pyrazinamidase/nicotina 37.3 79 0.0027 22.7 5.8 67 42-109 116-182 (186)
90 4fs3_A Enoyl-[acyl-carrier-pro 36.8 1.3E+02 0.0045 22.5 9.7 73 28-104 6-82 (256)
91 3n58_A Adenosylhomocysteinase; 36.6 1.3E+02 0.0044 25.4 7.5 73 26-98 245-324 (464)
92 7aat_A Aspartate aminotransfer 36.6 1.6E+02 0.0054 23.3 9.2 100 8-109 103-211 (401)
93 3ij5_A 3-deoxy-D-manno-octulos 36.4 1.2E+02 0.0042 22.1 7.3 64 17-84 84-148 (211)
94 1t6t_1 Putative protein; struc 34.3 29 0.00099 23.4 2.7 66 14-88 8-74 (118)
95 3jzl_A Putative cystathionine 32.9 1.5E+02 0.005 24.2 7.4 93 9-107 85-196 (409)
96 3n07_A 3-deoxy-D-manno-octulos 32.6 1.4E+02 0.0047 21.5 7.6 64 17-84 60-124 (195)
97 2l69_A Rossmann 2X3 fold prote 31.2 45 0.0016 21.5 3.1 62 40-110 16-79 (134)
98 3ogz_A UDP-sugar pyrophosphory 30.8 52 0.0018 29.0 4.4 50 2-51 133-186 (630)
99 3mn1_A Probable YRBI family ph 29.8 1.5E+02 0.005 20.9 7.3 66 17-88 54-120 (189)
100 3n1u_A Hydrolase, HAD superfam 29.8 1.5E+02 0.0051 21.0 7.0 66 17-88 54-120 (191)
101 3gvp_A Adenosylhomocysteinase 29.2 2.5E+02 0.0086 23.4 8.7 72 27-98 219-297 (435)
102 3elf_A Fructose-bisphosphate a 26.5 65 0.0022 26.1 4.0 29 87-115 1-29 (349)
103 3toe_A MTH10B, DNA/RNA-binding 26.4 97 0.0033 19.8 4.0 36 4-39 5-41 (91)
104 3i16_A Aluminum resistance pro 26.0 1.6E+02 0.0056 24.2 6.5 96 9-108 99-214 (427)
105 3da8_A Probable 5'-phosphoribo 25.3 2.1E+02 0.0071 21.2 9.4 84 9-98 21-110 (215)
106 3i42_A Response regulator rece 25.1 1.3E+02 0.0045 18.9 5.1 64 29-99 5-69 (127)
107 4ds3_A Phosphoribosylglycinami 24.4 2.2E+02 0.0074 21.0 8.3 87 8-98 15-107 (209)
108 3gl9_A Response regulator; bet 23.6 1.4E+02 0.0049 18.7 6.2 63 29-99 4-68 (122)
109 3dzc_A UDP-N-acetylglucosamine 23.3 1.9E+02 0.0065 23.3 6.4 38 13-51 40-77 (396)
110 3tqr_A Phosphoribosylglycinami 23.1 2.3E+02 0.008 21.0 10.0 86 9-98 14-104 (215)
111 3t6k_A Response regulator rece 22.7 1.6E+02 0.0055 19.0 6.1 65 29-100 6-71 (136)
112 3r3i_A UTP--glucose-1-phosphat 22.5 67 0.0023 27.6 3.5 49 2-50 146-199 (528)
113 3ewi_A N-acylneuraminate cytid 22.5 2E+02 0.0069 20.0 5.8 51 17-74 44-96 (168)
114 2lpm_A Two-component response 22.2 1.6E+02 0.0054 19.5 4.8 64 29-100 10-76 (123)
115 2bln_A Protein YFBG; transfera 22.0 2.9E+02 0.0098 21.6 8.0 77 15-97 13-95 (305)
116 3gt7_A Sensor protein; structu 21.5 1.8E+02 0.0063 19.2 6.9 64 29-100 9-74 (154)
117 3f6p_A Transcriptional regulat 21.0 1.6E+02 0.0055 18.4 5.6 58 29-94 4-63 (120)
118 3rqi_A Response regulator prot 21.0 1.9E+02 0.0063 20.0 5.3 59 29-95 9-69 (184)
119 3n0r_A Response regulator; sig 20.9 2.3E+02 0.0078 21.7 6.2 79 14-102 148-231 (286)
120 3ht4_A Aluminum resistance pro 20.6 1.5E+02 0.0052 24.3 5.3 93 9-107 91-202 (431)
121 2dxq_A AGR_C_4057P, acetyltran 20.3 1.3E+02 0.0044 19.8 4.2 41 10-52 99-139 (150)
No 1
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=100.00 E-value=1.8e-39 Score=255.66 Aligned_cols=201 Identities=29% Similarity=0.350 Sum_probs=177.7
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCC--CC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN--SE 78 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~--~d 78 (210)
.||+|++++|+|||+|+++++.+++.+++|+||+++++++.+++.+.. .+.++.|+.++.+|+.+||++++.. .+
T Consensus 25 ~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~---~v~~v~gg~~r~~sv~~gl~~~~~~~~~d 101 (231)
T 3q80_A 25 VPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH---RAMIVAGGSNRTDTVNLALTVLSGTAEPE 101 (231)
T ss_dssp SCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG---GCEEEECCSSHHHHHHHHHGGGC---CCS
T ss_pred CCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC---CeEEEcCCCchHHHHHHHHHHhhhcCCCC
Confidence 489999999999999999999988779999999999875556665543 4567778888999999999998643 58
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHh-cCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHH
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELV 157 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~ 157 (210)
+|++|+||+||+++++|+++++.+.+ .+++++++|+.+++++.+++|.+.++++|+.+|.+||||+|+.+.|..++...
T Consensus 102 ~Vlv~~~d~Pli~~~~i~~li~~~~~~~~~~i~~~p~~dt~~~~~~~g~v~~~~~r~~l~~~qTPq~F~~~~L~~a~~~~ 181 (231)
T 3q80_A 102 FVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRG 181 (231)
T ss_dssp EEEECCTTCTTCCHHHHHHHHHHHHTTCSEEEEEECCSSCEEEECTTSBEEECCCGGGEEEECSCEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCcCCCCHHHHHHHHHHHhhcCCeEEEEEeccCCEEEEcCCCcEEEecchhheEEEcCCcEEEHHHHHHHHHHH
Confidence 99999999999999999999999987 78899999999999887777889999999999999999999999999999876
Q ss_pred Hh--cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhh
Q 028320 158 NR--EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 204 (210)
Q Consensus 158 ~~--~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~ 204 (210)
.. .++++||+.++++..|.++..++++..+++||||+||..|+++++
T Consensus 182 ~~~n~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l~ 230 (231)
T 3q80_A 182 SLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVR 230 (231)
T ss_dssp TC-----CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHHH
T ss_pred HhhcCCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHhc
Confidence 54 257899999999999999999999999999999999999999985
No 2
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=100.00 E-value=7.1e-36 Score=237.42 Aligned_cols=209 Identities=24% Similarity=0.367 Sum_probs=182.0
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC--CcEEEecCCccHHHHHHHHHHcccC---
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--VDLKFSLPGKERQDSVYSGLQEVDF--- 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~--~~v~~~~~~~~~~~si~~~l~~~~~--- 75 (210)
+||+|++++|+|||+|+++++.+++.+++|+||++++..+.+.+.++.++ ..+.++.++.++.+|+..|++.+..
T Consensus 22 ~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~al~~l~~~~~ 101 (246)
T 3f1c_A 22 MPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIEGGEDRNETIMNGIRFVEKTYG 101 (246)
T ss_dssp CCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTTEEEEECCSSHHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHHHHhhhhc
Confidence 48999999999999999999999877999999999887555677777664 2466777888899999999999863
Q ss_pred --CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHH
Q 028320 76 --NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKG 153 (210)
Q Consensus 76 --~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~ 153 (210)
+.++|++++||+||+++++|+++++.+...+++++++|+.+++++.+++|.+..+.+|+.++..|+|++|+.+.|..+
T Consensus 102 ~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i~~~~~~d~i~~~~~~~~v~~~~~r~~l~~~qtpq~f~~~~L~~a 181 (246)
T 3f1c_A 102 LTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALDTIVESSNHEVITDIPVRDHMYQGQTPQSFNMKKVFNH 181 (246)
T ss_dssp CCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEEEEECSSCEEECSSSSBCCBCCCGGGEEEEEEEEEEEHHHHHHH
T ss_pred CCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEeccceEEEecCCCeEEEecChHHhhhhcCCceeEHHHHHHH
Confidence 368999999999999999999999999888888999999998887665677778889999999999999999999998
Q ss_pred HHHH-HhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcccCC
Q 028320 154 FELV-NREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSES 209 (210)
Q Consensus 154 ~~~~-~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~~~ 209 (210)
+... ...++++||...+++..|.++..++++..+++||||+||..|+.++++++.+
T Consensus 182 ~~~~~~~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~~~ 238 (246)
T 3f1c_A 182 YQNLTPEKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERIAN 238 (246)
T ss_dssp HHTSCHHHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccccc
Confidence 8765 2234679999999999999999999999999999999999999999988754
No 3
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=100.00 E-value=1.9e-31 Score=209.15 Aligned_cols=206 Identities=82% Similarity=1.229 Sum_probs=165.9
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
.||+|++++|+|||+|+++++.+++.+++|+|+++++.......+...++.++.++.++.++.+|+..|++.++.+.+.|
T Consensus 22 ~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~sv~~al~~~~~~~~~v 101 (228)
T 2yc3_A 22 MPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGKERQDSVYSGLQEIDVNSELV 101 (228)
T ss_dssp -CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTTSSSEEEEECCCSSHHHHHHHHHTTSCTTCSEE
T ss_pred CCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHhhccCCCEE
Confidence 38999999999999999999998866899999999875322222333444456667766788999999999986446899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE 160 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~ 160 (210)
+++++|+||+++++++++++.+...++++++.+..+.++.++.+|++.++++++.++..++|+.|+.+.|..++......
T Consensus 102 l~~d~d~P~~~~~~i~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~ 181 (228)
T 2yc3_A 102 CIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSE 181 (228)
T ss_dssp EEEETTCTTCCHHHHHHHHHHHHHHSEEEEEEECCSCCCCBCTTSCBCCCCSCCCCEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred EEecCCCccCCHHHHHHHHHHHHhcCceEEEEeccceEEEEcCCCceEEecCccceEEEeCCcEEEHHHHHHHHHHHHhc
Confidence 99999999999999999999887766667677777665554445666666788888888999999998888877655445
Q ss_pred CCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcc
Q 028320 161 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 161 ~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~ 206 (210)
++|+++...++...|.++..++++..++|||||+||+.++.+++.+
T Consensus 182 ~~~~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~~ 227 (228)
T 2yc3_A 182 GLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSED 227 (228)
T ss_dssp TCCCCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHTC-
T ss_pred CCCcccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHhhc
Confidence 6788988888888898888888877899999999999999998765
No 4
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=99.97 E-value=1.9e-30 Score=204.17 Aligned_cols=200 Identities=29% Similarity=0.397 Sum_probs=161.8
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccC-CCCE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF-NSEL 79 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~-~~d~ 79 (210)
.||+|++++|+|||+|+++++.+++.+++|+||++++....+.+.+. ++.++.+..||+++.+|+.+|++.++. +.++
T Consensus 31 ~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~~~~~~~gg~~~~~sv~~al~~~~~~~~~~ 109 (234)
T 1vpa_A 31 VPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVF-HEKVLGIVEGGDTRSQSVRSALEFLEKFSPSY 109 (234)
T ss_dssp SCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCC-CTTEEEEEECCSSHHHHHHHHHHHHGGGCCSE
T ss_pred CCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhc-cCCceEEeCCCCcHHHHHHHHHHHhhhcCCCE
Confidence 38999999999999999999999877899999999876333343333 333456777888899999999998853 3689
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 159 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~ 159 (210)
+++++||+||+++++++++++.+...+++++++++.++++..+.+| + .+++|+.++..++|++|+++.+..++..
T Consensus 110 vlv~~~D~Pli~~~~i~~l~~~~~~~~~~i~~~~~~~~~~~~~~~g-v-~~~~r~~~~~~~~p~~f~~~~l~~~~~~--- 184 (234)
T 1vpa_A 110 VLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVENDR-I-EYIPRKGVYRILTPQAFSYEILKKAHEN--- 184 (234)
T ss_dssp EEEEETTSCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEEEEETTE-E-EEECCTTEEEEEEEEEEEHHHHHHHHTT---
T ss_pred EEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEecCCcEEEECCCC-c-ccCChhHeeeecCCccccHHHHHHHHHh---
Confidence 9999999999999999999998876666666778777766555567 7 7788999999999999998887766543
Q ss_pred cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhccc
Q 028320 160 EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 207 (210)
Q Consensus 160 ~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~ 207 (210)
+++.++...+++..|.++..+..+..++|||||+||+.++.+++.+.
T Consensus 185 -~~~~~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~~ 231 (234)
T 1vpa_A 185 -GGEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAREWE 231 (234)
T ss_dssp -CCCCSSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHHHHC
T ss_pred -cCCCCcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHHhccc
Confidence 24567777788778888888877667899999999999999998765
No 5
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=99.97 E-value=3.6e-29 Score=197.25 Aligned_cols=205 Identities=31% Similarity=0.451 Sum_probs=163.1
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCC-cEEEecCCccHHHHHHHHHHcccCCCCE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV-DLKFSLPGKERQDSVYSGLQEVDFNSEL 79 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~-~v~~~~~~~~~~~si~~~l~~~~~~~d~ 79 (210)
.||+|++++|+|||+|+++++.+++.+++|+||++++. +.+.+ +..++. .+.++.++.++.+|+..|+..++ +.+.
T Consensus 25 ~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~-~~~~~-~~~~~~~~v~~~~~~~g~~~~i~~al~~~~-~~~~ 101 (236)
T 1i52_A 25 CPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGD-SRFAQ-LPLANHPQITVVDGGDERADSVLAGLKAAG-DAQW 101 (236)
T ss_dssp SCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTC-CSGGG-SGGGGCTTEEEEECCSSHHHHHHHHHHTST-TCSE
T ss_pred CCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccH-HHHHH-HHhcCCCCEEEECCCCCHHHHHHHHHHhcC-CCCE
Confidence 38999999999999999999998877899999999764 22333 444443 45566565678899999999884 3588
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcC-CeEEeeecccceEEccCC-CceeeecCccCeeeecCCcccChHHHHHHHHHH
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKEANSE-SFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELV 157 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~-g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~ 157 (210)
+++++||+||++++.++++++.+...+ .+++++|..++++..+++ |.+...++++.+|..++|++|+++.+...+...
T Consensus 102 ~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~p~~f~~~~l~~~~~~~ 181 (236)
T 1i52_A 102 VLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRA 181 (236)
T ss_dssp EEECCTTCTTCCHHHHHHHHGGGGTCSSCEEEEEECCSCEEEECTTSSSEEEEECCTTCEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEcCccccCCHHHHHHHHHHHHhcCCeEEEEEeccccEEEEcCCCCceeeccChHhheeeeCCceecHHHHHHHHHHH
Confidence 999999999999999999999876655 455567777765544434 567667788899999999999998888888776
Q ss_pred HhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcccC
Q 028320 158 NREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 208 (210)
Q Consensus 158 ~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~~ 208 (210)
..+|.++++...+++..|.++..+..+..++|||||+||+.++.+++.++.
T Consensus 182 ~~~g~~~td~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~~~ 232 (236)
T 1i52_A 182 LNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIH 232 (236)
T ss_dssp HHTTCCCCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC---
T ss_pred HhcCCCcccHHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHHHHHhhh
Confidence 666767888888888888888888777788999999999999999987653
No 6
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=99.96 E-value=1e-28 Score=194.26 Aligned_cols=204 Identities=26% Similarity=0.360 Sum_probs=162.6
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC--C--cEEEecCCccHHHHHHHHHHccc--
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--V--DLKFSLPGKERQDSVYSGLQEVD-- 74 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~--~--~v~~~~~~~~~~~si~~~l~~~~-- 74 (210)
+||+|++++|+|||+|+++++.+++.+++|+|+++++..+.+.+.+++++ . ...+..++.++.+|+.+|+..+.
T Consensus 21 ~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 100 (236)
T 2vsh_A 21 LPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIITKGGADRNTSIKNIIEAIDAY 100 (236)
T ss_dssp -CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceEEECCCCchHHHHHHHHHHHHhh
Confidence 48999999999999999999999866899999999876345666666666 2 34566677778999999999884
Q ss_pred -C--CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCC-ceeeecCccCeeeecCCcccChHHH
Q 028320 75 -F--NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSES-FVVRTLDRKTLWEMQTPQVIKPDLL 150 (210)
Q Consensus 75 -~--~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-~v~~~~~r~~~~~~~~P~~f~~~~l 150 (210)
. +.+++++++||+||+++++++++++.+.+.++++.+.|+.++++.. ++| .+..+.++..++..++|++|+.+.+
T Consensus 101 ~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~p~~f~~~~l 179 (236)
T 2vsh_A 101 RPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDAVDTVVEAVDTIVES-TNGQFITDIPNRAHLYQGQTPQTFRCKDF 179 (236)
T ss_dssp SCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSEEEEEEECCSCEEEC-SSSSBCCBCCCGGGEEEEEEEEEEEHHHH
T ss_pred ccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCcEEEEEeccccEEEe-CCCCeeeeecChHHheeecCCcEecHHHH
Confidence 2 3589999999999999999999999887766556677888776653 467 7777778887877788999998888
Q ss_pred HHHHHHHHhcCCC-CCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320 151 KKGFELVNREGLE-VTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 151 ~~~~~~~~~~~~~-~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
..++......+++ +++...++...|.++..+..+..++|||||+||..++.+++.
T Consensus 180 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~~~ 235 (236)
T 2vsh_A 180 MDLYGSLSDEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIEK 235 (236)
T ss_dssp HHHHHTCCHHHHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHTC-
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHhhc
Confidence 7777644333444 677666777788888888877789999999999999998864
No 7
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=99.96 E-value=5.7e-28 Score=188.50 Aligned_cols=201 Identities=30% Similarity=0.412 Sum_probs=160.4
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
.||+|++++|+|||+|+++++.+++.+++|+|+++++..+.+.+.+. +..+.++.++.++.+++..|++.++ +.+.+
T Consensus 20 ~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~i~~al~~~~-~~~~v 96 (223)
T 2xwl_A 20 RPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFG--GEDSVIVSGGVDRTESVALALEAAG-DAEFV 96 (223)
T ss_dssp SCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTC--BTTEEEEECCSSHHHHHHHHHTTCT-TCSEE
T ss_pred CCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhc--cCCeEEEcCCCCHHHHHHHHHHhcC-CCCEE
Confidence 48999999999999999999998876899999999875333444332 2345566665667899999999883 36889
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH-HhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320 81 CIHDSARPLVLSKDVQKVLMDA-LRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 159 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~ 159 (210)
++++||+||+++++++++++.+ .+.++++++.++.++.++.+++|.+..+++++.++..++|++|+...+...+....
T Consensus 97 lv~~~D~P~~~~~~i~~l~~~~~~~~~~~i~~~~~~d~~~~~~~~g~~~~~~e~~~l~~~~~p~~f~~~~l~~~~~~~~- 175 (223)
T 2xwl_A 97 LVHDAARALTPPALIARVVAALKEGHSAVVPGLAPADTIKAVDANGAVLGTPERAGLRAVQTPQGFHADVLRRAYARAT- 175 (223)
T ss_dssp EECCTTCTTCCHHHHHHHHHHHHHTCSEEEEEECCSSCEEEECTTSBEEECCCGGGEEEECSCEEEEHHHHHHHHTTCC-
T ss_pred EEEcCCcccCCHHHHHHHHHHHhhcCCeEEEEEecccceEEEcCCCcEEeecChHHheeeeCCcccCHHHHHHHHHHhh-
Confidence 9999999999999999999988 55566676778877776666567777778888888788999999877766654321
Q ss_pred cCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcc
Q 028320 160 EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 160 ~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~ 206 (210)
++++++...++...|.++..+..+..++|||||+||..++.+++.+
T Consensus 176 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~~ 221 (223)
T 2xwl_A 176 -AGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAHH 221 (223)
T ss_dssp -SCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHHT
T ss_pred -CCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhhc
Confidence 4567888888877788888887776789999999999999998764
No 8
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=99.96 E-value=9.2e-28 Score=188.39 Aligned_cols=199 Identities=27% Similarity=0.417 Sum_probs=156.4
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCC-cEEEecCCccHHHHHHHHHHcccC----
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV-DLKFSLPGKERQDSVYSGLQEVDF---- 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~-~v~~~~~~~~~~~si~~~l~~~~~---- 75 (210)
.||+|++++|+|||+|+++++.+++.+++|+||++++. +.+.+ +.+++. .+.++.++.++.+|+..|+..+..
T Consensus 24 ~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~-~~~~~-~~~~~~~~i~~~~~~~~~~~si~~~l~~~~~~~~~ 101 (231)
T 1vgw_A 24 KPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPED-TFADK-VQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLA 101 (231)
T ss_dssp -CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTC-STHHH-HHHHCTTSEEECCCCSSHHHHHHHHHHHHHHHSSS
T ss_pred CCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccH-HHHHH-HHhcCCCceEEEcCCCcHHHHHHHHHHHHhhhccC
Confidence 38999999999999999999998877899999998765 34555 444442 455666667789999999988742
Q ss_pred -CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcC-CeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHH
Q 028320 76 -NSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKG 153 (210)
Q Consensus 76 -~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~ 153 (210)
..+.+++++||+||+++++++++++.+...+ +++++++..++.+.. ++|.+....+++.++..++|++|+++.+..+
T Consensus 102 ~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~g~i~~~~~~~~~~~~~~p~~f~~~~l~~~ 180 (231)
T 1vgw_A 102 AETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVPVADTLKRA-ESGQISATVDRSGLWQAQTPQLFQAGLLHRA 180 (231)
T ss_dssp CTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEEEECCSCEEEE-SSSBEEEEECCTTEEEEEEEEEEEHHHHHHH
T ss_pred CCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeEEEEeecccceEEe-CCCceEecCChHHheeeeCCcEecHHHHHHH
Confidence 3689999999999999999999999886654 456677877765543 3566766778888888889999999888777
Q ss_pred HHHHHhcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhh
Q 028320 154 FELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 204 (210)
Q Consensus 154 ~~~~~~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~ 204 (210)
+.....++ +++...++...|.++..+..+..++|||||+||+.++.+++
T Consensus 181 ~~~~~~~g--~~~~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~ 229 (231)
T 1vgw_A 181 LAAENLGG--ITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLLD 229 (231)
T ss_dssp HHC----C--CCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHHCC
T ss_pred HHHHhhcC--CCcHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHHh
Confidence 76443334 57777777777888888887778999999999999999875
No 9
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=99.95 E-value=7.3e-27 Score=184.33 Aligned_cols=194 Identities=32% Similarity=0.450 Sum_probs=155.1
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVC 81 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl 81 (210)
||+|++++|+|||+|++++ +..+++|+||+++ .+. + ++..+ +.++.++.++..++..|++.++ .+.++
T Consensus 43 ~K~l~~i~gkpli~~~l~~---~~~~~~ivvv~~~-~~~---~-~~~~~--v~~~~~~~~~~~~i~~al~~~~--~~~vl 110 (236)
T 2px7_A 43 PKAFLQVGGRTLLEWTLAA---FRDAAEVLVALPP-GAE---P-PKGLG--AVFLEGGATRQASVARLLEAAS--LPLVL 110 (236)
T ss_dssp CGGGCBCSSSBHHHHHHHH---TTTCSEEEEEECT-TCC---C-CTTCS--CEEEECCSSHHHHHHHHHHHCC--SSEEE
T ss_pred CCeEEEECCEEHHHHHHHh---cCCCCeEEEEeCH-HHH---H-hhcCC--cEEEeCCCchHHHHHHHHHHcC--CCeEE
Confidence 8999999999999999999 3458999999997 321 2 22223 4556665668899999999885 68899
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhcC
Q 028320 82 IHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNREG 161 (210)
Q Consensus 82 ~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~~ 161 (210)
+++||+||++++.++++++.+...++++++.|..++.+..+ +|.+..+++++.++..++|++|+++.+...+......+
T Consensus 111 v~~~D~P~~~~~~i~~l~~~~~~~~~~i~~~~~~~~~~~~~-~G~v~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~g 189 (236)
T 2px7_A 111 VHDVARPFVSRGLVARVLEAAQRSGAAVPVLPVPDTLMAPE-GEAYGRVVPREAFRLVQTPQGFFTALLREAHAYARRKG 189 (236)
T ss_dssp ECCTTCCCCCHHHHHHHHHHHHHHSEEEEEEECCSEEEEEC-SSSCEEEECGGGCEEECSCEEEEHHHHHHHHHHHHHHT
T ss_pred EecCccccCCHHHHHHHHHHHHhcCCeEEEEecCCcEEEec-CCeEEecCChHhhccccCCeEEcHHHHHHHHHHHHhcC
Confidence 99999999999999999998876666666778777665544 67777777888888888999999988877777665556
Q ss_pred CCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcccC
Q 028320 162 LEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 208 (210)
Q Consensus 162 ~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~~ 208 (210)
+++++...+++..|.++..+..+..++|||||+||+.++.+++.+.+
T Consensus 190 ~~~~d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~~~ 236 (236)
T 2px7_A 190 LEASDDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALARVWSA 236 (236)
T ss_dssp CCCSSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC---
T ss_pred CCchhHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHHHHhccC
Confidence 77888888888788888887776688999999999999999987653
No 10
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=99.93 E-value=6.7e-26 Score=189.14 Aligned_cols=185 Identities=25% Similarity=0.342 Sum_probs=148.8
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
.||+|++++|+|||+|+++++.++..+++|+||++ +. +.+.+.+++ +.++.++.++.+|+.+|++.++ .+.+
T Consensus 21 ~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~~-~~i~~~~~~----v~~v~~g~g~~~sv~~aL~~l~--~d~v 92 (371)
T 1w55_A 21 VKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NI-TYMKKFTKN----YEFIEGGDTRAESLKKALELID--SEFV 92 (371)
T ss_dssp SCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-CH-HHHHTTCSS----SEEEECCSSHHHHHHHHHTTCC--SSEE
T ss_pred CCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-CH-HHHHHHhCC----CEEEeCCCChHHHHHHHHHhcC--CCeE
Confidence 48999999999999999999998767899999998 42 334433322 4556777888999999999885 6899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE 160 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~ 160 (210)
++++||+||+++++++++++.+.+.+++++++|+.+++++. ....+|+.++..++|+.|+++.+..++...
T Consensus 93 lv~~~D~Pli~~~~i~~li~~~~~~~a~i~~~~~~d~vk~v------~~t~~r~~l~~~~~P~~f~~~~l~~~~~~~--- 163 (371)
T 1w55_A 93 MVSDVARVLVSKNLFDRLIENLDKADCITPALKVADTTLFD------NEALQREKIKLIQTPQISKTKLLKKALDQN--- 163 (371)
T ss_dssp EEEETTCTTCCHHHHHHHHTTGGGCSEEEEEECCCSCEEET------TEEECGGGCCEECSCEEEEHHHHHHHTSSC---
T ss_pred EEEeCCcccCCHHHHHHHHHHHHhcCCEEEEEEeecCeeee------eeecCccceeecCCcceecHHHHHHHHHhc---
Confidence 99999999999999999999887767677778877765542 134577788888899999988877665421
Q ss_pred CCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhh
Q 028320 161 GLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILN 204 (210)
Q Consensus 161 ~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~ 204 (210)
++ +++...++++.|.++..++++..++|||||+||+.++ +++
T Consensus 164 ~~-~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae-ll~ 205 (371)
T 1w55_A 164 LE-FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD-LPT 205 (371)
T ss_dssp CC-CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC-CCC
T ss_pred cc-ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH-HhC
Confidence 23 6788888888888998888777899999999999998 774
No 11
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=99.91 E-value=1.1e-23 Score=167.55 Aligned_cols=201 Identities=15% Similarity=0.120 Sum_probs=138.0
Q ss_pred CccceecCCeehHHHHH-HHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccC-CCC
Q 028320 2 PKQYLPLLGQPIALYSF-YTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDF-NSE 78 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i-~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~-~~d 78 (210)
+|+|++++|||||.|++ +++.+++ +++|+|+|+++ .+.+.++++|..+.+..+ .....+++.+|++.+.. +.|
T Consensus 17 ~K~L~~i~GkPli~~~i~~~~~~~~-~~~vvVvt~~~---~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~a~~~~~~~~~d 92 (253)
T 4fcu_A 17 GKPLLLIHDRPMILRVVDQAKKVEG-FDDLCVATDDE---RIAEICRAEGVDVVLTSADHPSGTDRLSEVARIKGWDADD 92 (253)
T ss_dssp TGGGSEETTEEHHHHHHHHHHTCTT-CCEEEEEESCH---HHHHHHHTTTCCEEECCTTCCCHHHHHHHHHHHHTCCTTC
T ss_pred CCceeeECCeEhHHHHHHHHHHhcC-CCEEEEECCHH---HHHHHHHHcCCeEEEeCCCCCChHHHHHHHHHhcCcCCCC
Confidence 59999999999999999 9999886 99999999863 467778888877765432 22334578888888752 468
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhc-CC--eEEeeecc------cc--eEE-ccCCCceeee----c--CccC-----
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRV-GA--AVLGVPAK------AT--IKE-ANSESFVVRT----L--DRKT----- 135 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~-~~--~~~~~~~~------~~--~~~-~~~~g~v~~~----~--~r~~----- 135 (210)
.|++++||+||+++++|+++++.+.+. ++ +..++++. +| ++. .+++|.+..+ + +|+.
T Consensus 93 ~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~kvv~d~~g~~l~fsr~~ip~~r~~~~~~~ 172 (253)
T 4fcu_A 93 IIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATIPYDRDGAKRDE 172 (253)
T ss_dssp EEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSCEEEECTTSBEEEEESSCCSCCTTTSSSSS
T ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCccEEEECCCCeEEEecCCCCCCCCCcccccc
Confidence 999999999999999999999998765 22 44455542 22 222 2456665421 2 2221
Q ss_pred ------eeeecCCcccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCCC-CccccChhhHHHHHHHhhcc
Q 028320 136 ------LWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYT-NIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 136 ------~~~~~~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~v~~v~~~~~-~~dIdt~~Dl~~a~~~~~~~ 206 (210)
.+..-.-++|+...|..... .....++.++..+.++ ++|.++.++..+.. +++||||+||+.+++++++|
T Consensus 173 ~~~~~~~~~~~GiY~f~~~~l~~~~~-~~~~~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 173 PTLHTQAFRHLGLYAYRVSLLQEYVT-WEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp CCCCSCCEEEEEEEEEEHHHHHHHTT-SCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred cccccceeEEEEEEEeCHHHHHHHHh-CCCCcccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 12222346778777665331 1111123333334343 57999998777666 89999999999999999876
Q ss_pred c
Q 028320 207 S 207 (210)
Q Consensus 207 ~ 207 (210)
.
T Consensus 252 ~ 252 (253)
T 4fcu_A 252 F 252 (253)
T ss_dssp G
T ss_pred c
Confidence 4
No 12
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=99.90 E-value=3.7e-23 Score=163.50 Aligned_cols=200 Identities=15% Similarity=0.151 Sum_probs=139.5
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-CCccHHHHHHHHHHcccCCCCEE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-~~~~~~~si~~~l~~~~~~~d~v 80 (210)
||+|++++|+|||+|+++++.+++.+++|+|+++++ .+.+.++++++.+.... .......++..++..+. .+.+
T Consensus 18 ~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~~---~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~ 92 (245)
T 1h7e_A 18 GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDP---RVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKVE--ADIY 92 (245)
T ss_dssp TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCH---HHHHHHHHTTCEEEECCSCCSSHHHHHHHHHHHSC--CSEE
T ss_pred CCcccccCCchHHHHHHHHHHhCCCCCeEEEECCcH---HHHHHHHHcCCeEEeCCCccCCcHHHHHHHHHhCC--CCEE
Confidence 899999999999999999999997569999999873 45677777776553332 22334577778888773 6899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc-C--CeEEeeecc-------cceEEc-cCCCceeee-----c-Ccc----Ceeee
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRV-G--AAVLGVPAK-------ATIKEA-NSESFVVRT-----L-DRK----TLWEM 139 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~-~--~~~~~~~~~-------~~~~~~-~~~g~v~~~-----~-~r~----~~~~~ 139 (210)
++++||+||+++++++++++.+... + .++++.++. ..++.+ +++|.+..+ . +|+ ..+..
T Consensus 93 lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~ 172 (245)
T 1h7e_A 93 INLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKARYLKH 172 (245)
T ss_dssp EECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTTGGGCCEEEE
T ss_pred EEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCCHHHhcCCCCcEEEECCCCcEEEeecCCCCCCcccccCceeEE
Confidence 9999999999999999999988665 4 345555651 112222 345654322 1 232 14556
Q ss_pred cCCcccChHHHHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEEEecCCCCccccChhhHHHHHHHhhccc
Q 028320 140 QTPQVIKPDLLKKGFELVNREGLEVTDDVSIVE--HLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSS 207 (210)
Q Consensus 140 ~~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~ 207 (210)
.+++.|+...+...+ .....+++++|....++ ..|.++..+..+..++|||||+||+.++.+++.++
T Consensus 173 ~g~y~~~~~~l~~~~-~~~~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~~~~ 241 (245)
T 1h7e_A 173 VGIYAYRRDVLQNYS-QLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQEL 241 (245)
T ss_dssp EEEEEEEHHHHHHGG-GSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHHH
T ss_pred EEEEEcCHHHHHHHH-hCCCCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 788999987765544 11111122333333333 46889988888788999999999999999987654
No 13
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=99.90 E-value=5.8e-23 Score=164.38 Aligned_cols=198 Identities=13% Similarity=0.207 Sum_probs=133.1
Q ss_pred C-ccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHccc-CCCC
Q 028320 2 P-KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVD-FNSE 78 (210)
Q Consensus 2 ~-K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~-~~~d 78 (210)
| |+|++++|||||.|+++++.+++ +++|+|+|++ +.+.+.++++|..+.+... .....+.+..+++.+. .+.|
T Consensus 33 p~K~L~~i~GkPmi~~~l~~l~~~~-i~~IvV~t~~---~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~~~~~l~~~~~d 108 (264)
T 3k8d_A 33 PGKPLVDINGKPMIVHVLERARESG-AERIIVATDH---EDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDT 108 (264)
T ss_dssp TTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESC---HHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHHTCCTTC
T ss_pred CCcceeeECCeEHHHHHHHHHHhCC-CCEEEEECCH---HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHhccCCCC
Confidence 5 99999999999999999999987 8999999964 3467778888877655322 1111233556666653 2468
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccc--------eEEc-cCCCceee----ec--Ccc-------
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKAT--------IKEA-NSESFVVR----TL--DRK------- 134 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~--------~~~~-~~~g~v~~----~~--~r~------- 134 (210)
.|++++||+||+++++|+++++.+...++ ++.+.|+.++ ++.+ +++|++.. .+ +|+
T Consensus 109 ~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~~l~fsr~~ip~~r~~~~~~~~ 188 (264)
T 3k8d_A 109 VIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLE 188 (264)
T ss_dssp EEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEEECTTSBEEEEESSCCSCCHHHHHHCSS
T ss_pred EEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEEECCCCeEEEEecCCCCCCCcccccccc
Confidence 99999999999999999999999876554 6777777642 2322 55676653 22 232
Q ss_pred ----CeeeecCCcccChHHHHHHHHHHHhcCCCCCcHHHHH--HhCCCCeEEE-ecCCCCccccChhhHHHHHHHhh
Q 028320 135 ----TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV--EHLKHPVYIT-EGSYTNIKVTTPDDLLIAERILN 204 (210)
Q Consensus 135 ----~~~~~~~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~--~~~g~~v~~v-~~~~~~~dIdt~~Dl~~a~~~~~ 204 (210)
..+..-.-++|+...|..... .....++.++..+.+ .+.|.++.++ ..+..+++||||+||+.|+++++
T Consensus 189 ~~~~~~~~~~GiY~y~~~~l~~~~~-~~~~~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l~ 264 (264)
T 3k8d_A 189 TVGDNFLRHLGIYGYRAGFIRRYVN-WQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR 264 (264)
T ss_dssp CCCSCCEEECSEEEEEHHHHHHHHH-SCCCHHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC-
T ss_pred ccCCcceEEEEEEEECHHHHHHHHh-CCCChhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHhC
Confidence 122222346777777665433 111111111211222 2578899886 55667899999999999999874
No 14
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=99.90 E-value=1.7e-24 Score=169.67 Aligned_cols=192 Identities=17% Similarity=0.183 Sum_probs=128.3
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEE-----ecCCccHHHHHHHHHHcccCC
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKF-----SLPGKERQDSVYSGLQEVDFN 76 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~-----~~~~~~~~~si~~~l~~~~~~ 76 (210)
||+|++++|+|||+|+++++.+++.+++|+|+++++ .+.+.+++++..+.. ..++.++.+|+.+|++.+..+
T Consensus 20 ~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~g~~~sv~~~l~~~~~~ 96 (228)
T 1ezi_A 20 LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGG---LIAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSN 96 (228)
T ss_dssp TTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESCH---HHHHHHHHTTCEEEECCC------CHHHHHHHHHHHHHTCC
T ss_pred CcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCCH---HHHHHHHHcCCEEEeCchHHcCCCCChHHHHHHHHHHhCCC
Confidence 799999999999999999999987789999999764 345666677765421 224566789999999988534
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEeeeccc-ceEEc--cCCCceeeecCccCeeeecCCcccChHHHH
Q 028320 77 SELVCIHDSARPLVLSKDVQKVLMDALRV--GAAVLGVPAKA-TIKEA--NSESFVVRTLDRKTLWEMQTPQVIKPDLLK 151 (210)
Q Consensus 77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~~--~~~~~~~~~~~-~~~~~--~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~ 151 (210)
.|.+++++||+||+++++++++++.+... ++++++.+..+ +.+.. +++|.+..+.+++.++ ++.+.+.
T Consensus 97 ~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~ 169 (228)
T 1ezi_A 97 SGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSDLE-------QPRQQLP 169 (228)
T ss_dssp SEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTTSCEEECC--CEEESSCHHHHT-------CCGGGSC
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCCCcceeeEEcCCCcEeecccccccc-------CCcccCc
Confidence 68899999999999999999999877554 45677777766 33321 3456555554433211 1111100
Q ss_pred HHHHHHHhcCCCCCcHHHHHHh---CCCCeEEE-ecCCCCccccChhhHHHHHHHhhc
Q 028320 152 KGFELVNREGLEVTDDVSIVEH---LKHPVYIT-EGSYTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 152 ~~~~~~~~~~~~~~d~~~~~~~---~g~~v~~v-~~~~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
..+.. ..|.|+++...+.+. .|.++..+ .++..++|||||+||+.++.+++.
T Consensus 170 ~~~~~--~~giy~~~~~~l~~~~~~~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~~ 225 (228)
T 1ezi_A 170 QAFRP--NGAIYINDTASLIANNCFFIAPTKLYIMSHQDSIDIDTELDLQQAENILNH 225 (228)
T ss_dssp CEEEE--EEEEEEEEHHHHHHHTSSCCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC-
T ss_pred hhhee--eeEEEEEeHHHHhhCCcccCCceEEEEeCcccccCCCCHHHHHHHHHHHHh
Confidence 00000 012445555555444 57676544 444579999999999999999875
No 15
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=99.88 E-value=6.7e-22 Score=157.56 Aligned_cols=197 Identities=12% Similarity=0.152 Sum_probs=133.5
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHccc-CCCCE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVD-FNSEL 79 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~-~~~d~ 79 (210)
||+|++++|||||.|+++++.+++ +++|+|+|++ +.+.+.++++|..+.+... .....+.+..|++.+. .+.|.
T Consensus 25 ~K~L~~i~GkPli~~~l~~l~~~~-i~~VvVvt~~---~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~a~~~l~~~~~d~ 100 (256)
T 3tqd_A 25 GKALVDIAGKPMIQHVYESAIKSG-AEEVVIATDD---KRIRQVAEDFGAVVCMTSSDHQSGTERIAEAAVALGFEDDEI 100 (256)
T ss_dssp TGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESC---HHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHTTCCTTCE
T ss_pred CCCeeeECCchHHHHHHHHHHhCC-CCEEEEECCH---HHHHHHHHHcCCeEEEeCCCCCCcHHHHHHHHHHhCcCCCCE
Confidence 699999999999999999999986 8999999975 3567778888877766432 2222445788888874 24689
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEeeecccc--------eE-EccCCCceeee----c--Ccc-------
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRV---GAAVLGVPAKAT--------IK-EANSESFVVRT----L--DRK------- 134 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~---~~~~~~~~~~~~--------~~-~~~~~g~v~~~----~--~r~------- 134 (210)
|++++||+||++++.++++++.+.+. +.++.+.|+.++ ++ ..+++|++..+ + +|+
T Consensus 101 vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~d~~g~~l~fsr~pip~~r~~~~~~~~ 180 (256)
T 3tqd_A 101 IVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGRDTFSDKEN 180 (256)
T ss_dssp EEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCTTTTTCGGG
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEEECCCCEEeEEecCCCCCCCcccccccc
Confidence 99999999999999999999998753 345667776432 12 23556765422 2 232
Q ss_pred -----CeeeecCCcccChHHHHHHHHHHHhcCCCCCcHHHHH--HhCCCCeEEEecCC-CCccccChhhHHHHHHHh
Q 028320 135 -----TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSIV--EHLKHPVYITEGSY-TNIKVTTPDDLLIAERIL 203 (210)
Q Consensus 135 -----~~~~~~~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~~--~~~g~~v~~v~~~~-~~~dIdt~~Dl~~a~~~~ 203 (210)
..+..-.-++|+...|..... .....++.++..+.+ ..+|.++.++..+. .+++||||+||+.+++++
T Consensus 181 ~~~~~~~~~~~GiY~y~~~~l~~~~~-l~~s~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~~ 256 (256)
T 3tqd_A 181 LQLNGSHYRHVGIYAYRVGFLEEYLS-WDACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAYF 256 (256)
T ss_dssp CCCSSCCEEEEEEEEEEHHHHHHHHH-SCCCHHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTTC
T ss_pred cccCCcceEEEEEEEcCHHHHHHHHh-CCCCcccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHhC
Confidence 122333346788776655332 111001111111222 35899999877764 579999999999998764
No 16
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=99.88 E-value=1.9e-21 Score=154.77 Aligned_cols=201 Identities=12% Similarity=0.177 Sum_probs=134.9
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCC-ccHHHHHHHHHHccc-CCCCE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-KERQDSVYSGLQEVD-FNSEL 79 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~-~~~~~si~~~l~~~~-~~~d~ 79 (210)
||+|++++|||||+|+++++.+++ +++|+|+|++ +.+.+.++++|..+.+.... ....+.+..+++.+. .+.|.
T Consensus 18 ~K~L~~i~GkPli~~~l~~l~~~~-~~~ivVv~~~---~~i~~~~~~~g~~v~~~~~~~~~Gt~~~~~~~~~l~~~~~d~ 93 (252)
T 3oam_A 18 GKPLADIGGKPMIQWVYEQAMQAG-ADRVIIATDD---ERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHI 93 (252)
T ss_dssp TGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESC---HHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHTTCCTTSE
T ss_pred CcceeeECCEEHHHHHHHHHHhCC-CCeEEEECCH---HHHHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHhcCcCCCCE
Confidence 499999999999999999999987 8999999964 35677888888777664321 122334677777763 24689
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc--------e-EEccCCCceeee----cC--cc--------
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT--------I-KEANSESFVVRT----LD--RK-------- 134 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~~--------~-~~~~~~g~v~~~----~~--r~-------- 134 (210)
+++++||+||+++++++++++.+...+ .++.+.++.++ . ...+++|.+..+ ++ |+
T Consensus 94 vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~~~~~~ 173 (252)
T 3oam_A 94 VVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKA 173 (252)
T ss_dssp EEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHHSSSCC
T ss_pred EEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCcccccccc
Confidence 999999999999999999999987654 45667776543 1 123456766542 11 21
Q ss_pred ---CeeeecCCcccChHHHHHHHHHHHhcCCCCCcHHHH--HHhCCCCeEEE-ecCCCCccccChhhHHHHHHHhhccc
Q 028320 135 ---TLWEMQTPQVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYIT-EGSYTNIKVTTPDDLLIAERILNLSS 207 (210)
Q Consensus 135 ---~~~~~~~P~~f~~~~l~~~~~~~~~~~~~~~d~~~~--~~~~g~~v~~v-~~~~~~~dIdt~~Dl~~a~~~~~~~~ 207 (210)
..+....-++|+...|......... .++..+..+. ....|.++... ..+..++|||||+||+.++++++.|.
T Consensus 174 ~~~~~~~n~GiY~~~~~~l~~~~~~~~~-~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r~ 251 (252)
T 3oam_A 174 IVQPLLRHIGIYAYRAGFINTYLDWQPS-QLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAERA 251 (252)
T ss_dssp CCSCEEEEEEEEEEETTHHHHHHHSCCC-HHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHTT
T ss_pred ccccceEEEEEEEcCHHHHHHHHcCCCC-cccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhhc
Confidence 1122223477887776664432100 0000000111 23468888875 34557899999999999999998763
No 17
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=99.87 E-value=1.6e-21 Score=167.08 Aligned_cols=202 Identities=15% Similarity=0.177 Sum_probs=143.3
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
+||+|++++|+|||+|+++++.+++ +++|+|+++++. +.+.+.+.+++..+..-....+..+++..|++.++ +.+.+
T Consensus 26 ~pK~l~~i~g~pli~~~l~~l~~~~-~~~i~vv~~~~~-~~i~~~~~~~~~~~v~~~~~~g~~~~i~~~~~~~~-~~~~~ 102 (459)
T 4fce_A 26 LPKVLHPLAGKPMVQHVIDAAMKLG-AQHVHLVYGHGG-ELLKKTLADPSLNWVLQAEQLGTGHAMQQAAPHFA-DDEDI 102 (459)
T ss_dssp SCGGGSEETTEEHHHHHHHHHHHHT-CSCEEEEESSCH-HHHHHHC-----CEEECSSCCCHHHHHHHHGGGSC-TTSEE
T ss_pred CCcccCeeCCeeHHHHHHHHHHhCC-CCcEEEEeCCCH-HHHHHHhccCCcEEEeCCCCCCcHHHHHHHHHhcC-CCCcE
Confidence 4899999999999999999999987 899999999875 56666666555443222223345789999999986 35899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccce----EEccCCCceeeecCccC-------eeeecC-CcccChH
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLDRKT-------LWEMQT-PQVIKPD 148 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~g~v~~~~~r~~-------~~~~~~-P~~f~~~ 148 (210)
++++||+||+++++++++++.+.+.+.++++.+..++. ...+ +|.+..+.++.. .+..++ -+.|+..
T Consensus 103 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~ 181 (459)
T 4fce_A 103 LMLYGDVPLISVDTLQRLLAAKPEGGIGLLTVKLDNPSGYGRIVRE-NGDVVGIVEHKDASDAQREINEINTGILVANGR 181 (459)
T ss_dssp EEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEECSCCTTSCEEEEE-TTEEEEEECGGGCCTTGGGCCEEEEEEEEEEHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHhhCCEEEEEEecCCCCcccEEEeC-CCcEEEEEECCCCChHHhhccEEEEEEEEEEHH
Confidence 99999999999999999999887666677777766552 1122 566665544321 111111 2455655
Q ss_pred HHHHHHHHH----HhcCCCCCcHHHHHHhCCCCeEEEecC--CCCccccChhhHHHHHHHhhcc
Q 028320 149 LLKKGFELV----NREGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 149 ~l~~~~~~~----~~~~~~~~d~~~~~~~~g~~v~~v~~~--~~~~dIdt~~Dl~~a~~~~~~~ 206 (210)
.|..++... .+.+++++|....+...|.++..+..+ ...++||||+||..++.+++.+
T Consensus 182 ~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~ 245 (459)
T 4fce_A 182 DLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTE 245 (459)
T ss_dssp HHHHHHHTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccCCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHH
Confidence 555554432 122367788878888888899887776 4679999999999999998755
No 18
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=99.87 E-value=3.1e-21 Score=147.57 Aligned_cols=175 Identities=20% Similarity=0.131 Sum_probs=125.3
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCC-ccHHHHHHHHHHcccCCCCE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-KERQDSVYSGLQEVDFNSEL 79 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~-~~~~~si~~~l~~~~~~~d~ 79 (210)
.||+|++++|+|||+|+++++.+++ +++|+|+++++. +.+.+.+.+++..+....+. .+..+++..|++.++.+.+.
T Consensus 21 ~~K~l~~~~g~pli~~~l~~l~~~~-~~~i~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~ 98 (199)
T 2waw_A 21 TPKQLLPLGDTTLLGATLAMARRCP-FDQLIVTLGGAA-DEVLEKVELDGLDIVLVDDAGLGCSSSLKSALTWVDPTAEG 98 (199)
T ss_dssp SCGGGCEETTEEHHHHHHHHHHTSS-CSEEEEEECTTH-HHHHHHSCCTTSEEEECCCCCTTCCCHHHHHHHTSCTTCSE
T ss_pred CCEEeCEeCccCHHHHHHHHHHhCC-CCcEEEEeCCCH-HHHHHHhccCCCEEEECCCcccCHHHHHHHHHHhhhccCCe
Confidence 4899999999999999999999887 899999998864 45666666666555443332 23478899999998433689
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 159 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~ 159 (210)
++++.||+||+++++++++++. ..++.+ +++..+ |. ..+|..|+...+..+....
T Consensus 99 vlv~~~D~P~~~~~~i~~l~~~--~~~~~~-~~~~~~--------g~------------~~~P~~~~~~~l~~~~~~~-- 153 (199)
T 2waw_A 99 IVLMLGDQPGITASAVASLIAG--GRGATI-AVCEYA--------NG------------IGHPFWVSRGVFGDLAELH-- 153 (199)
T ss_dssp EEEEETTCTTCCHHHHHHHHHH--HTTCSE-EEEEET--------TE------------EEEEEEEEGGGHHHHHTCS--
T ss_pred EEEEeCCcccCCHHHHHHHHhh--cCCCCE-EEEecC--------Cc------------ccCCEEEcHHHHHHHHhcC--
Confidence 9999999999999999999987 333322 223221 21 0146677777666544211
Q ss_pred cCCCCCcHHHHHHhCCCCeEEEecC-CCCccccChhhHHHHHHHhhc
Q 028320 160 EGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 160 ~~~~~~d~~~~~~~~g~~v~~v~~~-~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
+ -.+...+++..+.++..+..+ ...+|||||+||..++.+++.
T Consensus 154 -~--~~~~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~~~ 197 (199)
T 2waw_A 154 -G--DKGVWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASVVR 197 (199)
T ss_dssp -S--TTCHHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHHHH
T ss_pred -C--CHHHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHHhh
Confidence 1 123456666677778777653 478999999999999998864
No 19
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=99.85 E-value=4.7e-20 Score=157.85 Aligned_cols=202 Identities=16% Similarity=0.153 Sum_probs=141.7
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
.||+|++++|+|||+|+++++.+++ +++|+|+++++. +.+.+.+.+++..+..-....+..+++..|++.++. .+.+
T Consensus 23 ~pK~l~~i~gkpli~~~l~~l~~~~-~~~iivv~~~~~-~~i~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~-~~~v 99 (456)
T 2v0h_A 23 LPKVLHTIAGKPMVKHVIDTAHQLG-SENIHLIYGHGG-DLMRTHLANEQVNWVLQTEQLGTAHAVQQAAPFFKD-NENI 99 (456)
T ss_dssp SCGGGSEETTEEHHHHHHHHHHHTT-CSCEEEEECTTH-HHHHHHTTTCCCEEEECSCCCCHHHHHHHHGGGCCT-TSEE
T ss_pred CCccccEECCccHHHHHHHHHHhCC-CCcEEEEeCCCH-HHHHHHhhcCCcEEEeCCCCCCcHHHHHHHHHhcCC-CCeE
Confidence 4899999999999999999999986 899999999864 456666555443322212233457899999988852 5789
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccce----EEccCCCceeeecCccC-------eeeecC-CcccChH
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLDRKT-------LWEMQT-PQVIKPD 148 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~g~v~~~~~r~~-------~~~~~~-P~~f~~~ 148 (210)
++++||+||+++++++++++.+.+.+.++.+.+..++. ...+ +|.+..+.++.. .+..++ ++.|+..
T Consensus 100 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~ 178 (456)
T 2v0h_A 100 VVLYGDAPLITKETLEKLIEAKPENGIALLTVNLDNPTGYGRIIRE-NGNVVAIVEQKDANAEQLNIKEVNTGVMVSDGA 178 (456)
T ss_dssp EEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEECSSCTTSCEEEEE-TTEEEEEECTTTCCHHHHTCCEEEEEEEEEEHH
T ss_pred EEEcCCcceeCHHHHHHHHHHHhcCCEEEEEeecCCCCccceEEEc-CCcEEEEEECCCCChhHhcCcEEEEEEEEEEHH
Confidence 99999999999999999998876544455555655432 1113 566655554322 123333 5778877
Q ss_pred HHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecC--CCCccccChhhHHHHHHHhhcc
Q 028320 149 LLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 149 ~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~--~~~~dIdt~~Dl~~a~~~~~~~ 206 (210)
.|.+.+..... ..+++++....+...|.++..+..+ ...++||||+||+.++.++..+
T Consensus 179 ~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~ 242 (456)
T 2v0h_A 179 SFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNK 242 (456)
T ss_dssp HHHHHHTTCCCCSTTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHH
Confidence 66665543211 1255677777777788888876653 4568999999999999987654
No 20
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=99.85 E-value=1.7e-20 Score=143.26 Aligned_cols=174 Identities=13% Similarity=0.076 Sum_probs=119.6
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccCCCCE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSEL 79 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~~~d~ 79 (210)
.||+|++++|+|||+|+++++.+++ +++|+|+++++. +.+.+.+.+++..+....+ ..+..+++..|++.+..+.+.
T Consensus 21 ~~K~l~~~~g~pll~~~l~~l~~~~-~~~i~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~ 98 (197)
T 2wee_A 21 TPKQLLPYRDTTVLGATLDVARQAG-FDQLILTLGGAA-SAVRAAMALDGTDVVVVEDVERGCAASLRVALARVHPRATG 98 (197)
T ss_dssp SCGGGSEETTEEHHHHHHHHHHHTT-CSEEEEEECTTH-HHHHHHSCCTTSEEEECC----CCHHHHHHHHTTSCTTEEE
T ss_pred CCeEcCeeCCccHHHHHHHHHHhcC-CCcEEEEeCCCH-HHHHHHhccCCCEEEECCCcccCHHHHHHHHHHHhcccCCe
Confidence 4899999999999999999999886 899999998864 4566666555655433222 234588999999988423578
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHh
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNR 159 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~ 159 (210)
++++.||+||+++++++++++. . .++.+ ++|..+ |. .++|.+|+...+..+.. .
T Consensus 99 vlv~~~D~P~~~~~~i~~l~~~-~-~~~~i-~~~~~~--------g~------------~~~P~~~~~~~l~~l~~-~-- 152 (197)
T 2wee_A 99 IVLMLGDQPQVAPATLRRIIDV-G-PATEI-MVCRYA--------DG------------VGHPFWFSRTVFGELAR-L-- 152 (197)
T ss_dssp EEEEETTCTTCCHHHHHHHHHH-G-GGSSE-EEEEET--------TE------------EEEEEEEEGGGHHHHHT-C--
T ss_pred EEEEeCCcCCCCHHHHHHHHhh-c-CCCCE-EEEecC--------CC------------cCCCEEECHHHHHHHHh-C--
Confidence 9999999999999999999987 3 33322 233221 21 01466777766555431 1
Q ss_pred cCCCCCcHHHHHHhCCCCeEEEecC-CCCccccChhhHHHHHHHhh
Q 028320 160 EGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILN 204 (210)
Q Consensus 160 ~~~~~~d~~~~~~~~g~~v~~v~~~-~~~~dIdt~~Dl~~a~~~~~ 204 (210)
.+ -.....+++..+.++..+..+ ...+|||||+||..++.++.
T Consensus 153 ~~--~~~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~~~~ 196 (197)
T 2wee_A 153 HG--DKGVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLESVP 196 (197)
T ss_dssp CS--TTHHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHTC--
T ss_pred CC--ChhHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHhc
Confidence 11 011235566667778777653 47899999999999887653
No 21
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=99.84 E-value=7.7e-20 Score=157.14 Aligned_cols=201 Identities=14% Similarity=0.128 Sum_probs=140.1
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d 78 (210)
+||+|++++|||||+|+++++.+++ +++|+|+++++. +.+.+.+.+ + +.++.+ ..++.+++..|++.++...+
T Consensus 29 ~pK~l~~i~gkpli~~~l~~l~~~g-~~~iivv~~~~~-~~i~~~~~~-~--i~~v~~~~~~G~~~sl~~a~~~~~~~~~ 103 (468)
T 1hm9_A 29 LPKVLHKVAGISMLEHVFRSVGAIQ-PEKTVTVVGHKA-ELVEEVLAG-Q--TEFVTQSEQLGTGHAVMMTEPILEGLSG 103 (468)
T ss_dssp SCGGGSEETTEEHHHHHHHHHHTTC-CSEEEEEECTTH-HHHHHSSSS-S--SEEEECSSCCCHHHHHHTTHHHHTTCCS
T ss_pred CCcEeeEECCccHHHHHHHHHHhcC-CCCEEEEECCCH-HHHHHHhCC-C--cEEEeCCccCChHHHHHHHHHHhccCCC
Confidence 4899999999999999999999986 899999998874 344444333 2 344433 23468889999988863358
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccce----EEccCCCceeeecCcc--------CeeeecCCcc
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATI----KEANSESFVVRTLDRK--------TLWEMQTPQV 144 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~~----~~~~~~g~v~~~~~r~--------~~~~~~~P~~ 144 (210)
.+++++||+||+++++++++++.+.+.++ ++.+.+..++. ...+++|.+..+.++. ..+....++.
T Consensus 104 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~ 183 (468)
T 1hm9_A 104 HTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYV 183 (468)
T ss_dssp EEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTTCCEEEEECTTTCCTTGGGCCEEEEEEEE
T ss_pred eEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEECCCCCEEEEEECCCCChHHhcCeEEEEEEEE
Confidence 89999999999999999999998876554 44455554431 2234457776554431 1233345788
Q ss_pred cChHHHHHHHHHHHhc----CCCCCcHHHHHHhCCCCeEEEecC--CCCccccChhhHHHHHHHhhcc
Q 028320 145 IKPDLLKKGFELVNRE----GLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 145 f~~~~l~~~~~~~~~~----~~~~~d~~~~~~~~g~~v~~v~~~--~~~~dIdt~~Dl~~a~~~~~~~ 206 (210)
|+...|.+.+...... .++++|....+...|.++.....+ ...++||||+||..++.++..+
T Consensus 184 f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~ 251 (468)
T 1hm9_A 184 FDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRR 251 (468)
T ss_dssp EEHHHHHHHHTTCCSCSTTCSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHhhccccCCCeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHH
Confidence 8887666655432221 245676666666677788765433 4557899999999999887643
No 22
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=99.83 E-value=1.3e-19 Score=142.10 Aligned_cols=195 Identities=15% Similarity=0.163 Sum_probs=126.7
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccCCCCEE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~~~d~v 80 (210)
||+|++++|+|||+|+++++.++ +++|+|+++++ .+.+.++++ ..+.+... .......+..|++.+. .+.+
T Consensus 18 ~K~l~~i~g~pli~~~l~~~~~~--~~~i~v~~~~~---~i~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~--~~~v 89 (234)
T 2y6p_A 18 EKPLKNLLGKPLIRWVVEGLVKT--GERVILATDSE---RVKEVVEDL-CEVFLTPSDLPSGSDRVLYVVRDLD--VDLI 89 (234)
T ss_dssp TGGGCEETTEEHHHHHHHHHHTT--TSCEEEEESCH---HHHHHHTTT-SEEEECCTTCCSHHHHHHHHHTTCC--CSEE
T ss_pred CCcceeECCEEHHHHHHHHHHHh--CCEEEEECChH---HHHHHHHhc-eEEEECCcccccchHHHHHHHHhCC--CCEE
Confidence 89999999999999999999887 89999999873 355666555 44433322 1122334556776664 5899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecc-------cceEE-ccCCCceeeecC------cc----CeeeecCC
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAK-------ATIKE-ANSESFVVRTLD------RK----TLWEMQTP 142 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~-------~~~~~-~~~~g~v~~~~~------r~----~~~~~~~P 142 (210)
++++||+||+++++++++++.+...++.++.+... ..+.. .+++|.+..+.+ ++ ..+...++
T Consensus 90 lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~e~~~~~~~~~~~~~~~~~~gi 169 (234)
T 2y6p_A 90 INYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYERPEDVKVVLDREGYALYFSRSPIPYFRKNDTFYPLKHVGI 169 (234)
T ss_dssp EECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGGCTTSCEEEECTTSBEEEEESSCCSCCSSCCSSCCEEEEEE
T ss_pred EEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhcCCCceEEEEcCCCCEeeeecCCCCcccccccceeeEEEEE
Confidence 99999999999999999999887655433322211 12222 244566643321 22 13445678
Q ss_pred cccChHHHHHHHHHHHhcCCCCCcHHHH--HHhCCCCeEEEecCCCCccccChhhHHHHHHHhhc
Q 028320 143 QVIKPDLLKKGFELVNREGLEVTDDVSI--VEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 143 ~~f~~~~l~~~~~~~~~~~~~~~d~~~~--~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
+.|+...|..+.... ...+..++.... +...|.++..+..+..++|||||+||..++.+++.
T Consensus 170 y~~~~~~l~~~~~~~-~~~~~~~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~~~ 233 (234)
T 2y6p_A 170 YGFRKETLMEFGAMP-PSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKLKN 233 (234)
T ss_dssp EEEEHHHHHHHHHSC-CCHHHHHHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHCC-
T ss_pred EEcCHHHHHHHHhCC-CCccchhhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHHhh
Confidence 889887776544210 000000110011 22347788888777889999999999999998763
No 23
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=99.83 E-value=4e-20 Score=144.97 Aligned_cols=192 Identities=13% Similarity=0.029 Sum_probs=120.1
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-----CCccHHHHHHHHHHcccCC
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-----PGKERQDSVYSGLQEVDFN 76 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-----~~~~~~~si~~~l~~~~~~ 76 (210)
+|+|++++|+|||+|+++++.+++.+++|+|+++++ .+.+.++++++.+.... +.....+++.+|++.+. +
T Consensus 19 ~K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~~~---~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~al~~~~-~ 94 (229)
T 1qwj_A 19 LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHD---EIENVAKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHN-E 94 (229)
T ss_dssp CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCH---HHHHHHHHTTCEEEECCGGGSSTTCCHHHHHHHHHTTCT-T
T ss_pred CcccceECCEEHHHHHHHHHHhCCCcCEEEEECChH---HHHHHHHHcCCEEEeChhhhcCCCCcHHHHHHHHHHhcC-C
Confidence 499999999999999999999987679999999643 45677777776653321 23344688999999884 4
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccceEEccCCCc--eee--ecCcc-CeeeecCCcccChHH
Q 028320 77 SELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATIKEANSESF--VVR--TLDRK-TLWEMQTPQVIKPDL 149 (210)
Q Consensus 77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~g~--v~~--~~~r~-~~~~~~~P~~f~~~~ 149 (210)
.|.+++++||+||+++++|+++++.+...++ ++++.+..++.+....+|. +.+ +.... .......|..+..
T Consensus 95 ~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 172 (229)
T 1qwj_A 95 VDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEIQKGVREVTEPLNLNPAKRPRRQDWDGELYE-- 172 (229)
T ss_dssp CSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCEECCCCSSTTCCCCBSSSBTTBCCCTTTSCCEEEE--
T ss_pred CCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeeccChhHhhccccccccccccccccccccCCCCCCceEEE--
Confidence 6899999999999999999999998876544 4444444454332111121 100 00000 0000011111100
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHH--hCCCCeEE-EecCCCCccccChhhHHHHHHHhhcccC
Q 028320 150 LKKGFELVNREGLEVTDDVSIVE--HLKHPVYI-TEGSYTNIKVTTPDDLLIAERILNLSSE 208 (210)
Q Consensus 150 l~~~~~~~~~~~~~~~d~~~~~~--~~g~~v~~-v~~~~~~~dIdt~~Dl~~a~~~~~~~~~ 208 (210)
..|.|..+...+.. ..|.++.+ +..+..++|||||+||+.++.+++....
T Consensus 173 ---------n~giY~~~~~~l~~~~~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~~~~ 225 (229)
T 1qwj_A 173 ---------NGSFYFAKRHLIEMGYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLRFGY 225 (229)
T ss_dssp ---------EEEEEEEEHHHHHTTCSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHHHSC
T ss_pred ---------eeEEEEEEHHHhccccccCCeEEEEECCcccccCCCCHHHHHHHHHHHHHhcc
Confidence 01122222111111 13556655 4444678999999999999999887654
No 24
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=99.83 E-value=7.9e-22 Score=150.92 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=83.6
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cCC--cEEEe-cCCccHHHHHHHHHHcccCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV--DLKFS-LPGKERQDSVYSGLQEVDFN 76 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~~--~v~~~-~~~~~~~~si~~~l~~~~~~ 76 (210)
.||+|++++|+|||+|+++++.+++ +++|+|+|+++. +.+.+.+.+ ++. .+.++ .++.++.+|+..|++.+
T Consensus 17 ~~K~l~~~~g~pli~~~l~~l~~~~-~~~v~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~g~~~si~~al~~~--- 91 (196)
T 3rsb_A 17 VEKPLIKLCGRCLIDYVVSPLLKSK-VNNIFIATSPNT-PKTKEYINSAYKDYKNIVVIDTSGKGYIEDLNECIGYF--- 91 (196)
T ss_dssp SCGGGCEETTEEHHHHHHHHHHSSS-CCCEEEECCTTC-HHHHHHHHHHTTTTTEEEE--------CCCCCTTTTTC---
T ss_pred CCccEEEECCEEHHHHHHHHHHHCC-CCEEEEEeCCCh-HHHHHHHHhhccCCCCEEEEECCCCCcHHHHHHHHHhC---
Confidence 4899999999999999999999997 999999999876 556666665 331 23333 33455567788888877
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHh-------cCCeEEeeeccc
Q 028320 77 SELVCIHDSARPLVLSKDVQKVLMDALR-------VGAAVLGVPAKA 116 (210)
Q Consensus 77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~-------~~~~~~~~~~~~ 116 (210)
.+.+++++||+||+++++++++++.+.. .++.++++|..+
T Consensus 92 ~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~~ 138 (196)
T 3rsb_A 92 SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPKEK 138 (196)
T ss_dssp SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEETTT
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEccc
Confidence 5789999999999999999999999875 244566667653
No 25
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=99.82 E-value=2.7e-18 Score=137.10 Aligned_cols=199 Identities=14% Similarity=0.219 Sum_probs=125.8
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-CCccHHHHHHHHHHcccC-CCCE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDF-NSEL 79 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-~~~~~~~si~~~l~~~~~-~~d~ 79 (210)
+|+|++++|+|||+|+++++.+++ +++|+|+++++ .+.+.++++++.+.... .......++..++..+.. +.+.
T Consensus 18 ~K~l~~~~gkpli~~~l~~l~~~~-~~~ivvv~~~~---~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 93 (262)
T 1vic_A 18 GKPLADIKGKPMIQHVFEKALQSG-ASRVIIATDNE---NVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEI 93 (262)
T ss_dssp TGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCH---HHHHHHHHTTCEEEECCCSSCCHHHHHHHHHHHTTCCTTCE
T ss_pred CCccccCCCeEHHHHHHHHHHhCC-CceEEEECCcH---HHHHHHHhcCCEEEECCccccCChHHHHHHHHHhccCCCCE
Confidence 599999999999999999999987 59999999863 35666777776653321 111112234444444432 3588
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc--------eEEc-cCCCceeeec------CccCee-----
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT--------IKEA-NSESFVVRTL------DRKTLW----- 137 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~~--------~~~~-~~~g~v~~~~------~r~~~~----- 137 (210)
+++++||+||+++++++++++.+...+ .++++.++.++ .+.+ +++|.+..+. +|+. +
T Consensus 94 vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~-~~~~~~ 172 (262)
T 1vic_A 94 IVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQ-FMNLQD 172 (262)
T ss_dssp EEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHH-HTTCSC
T ss_pred EEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCcc-cccccc
Confidence 999999999999999999999886553 45667777653 2222 4456553211 1221 1
Q ss_pred --eecCCc---------ccChHHHHHHHHHHHhc---CCCCCcHHHHHHhCCCCeEEEecC-CCCccccChhhHHHHHHH
Q 028320 138 --EMQTPQ---------VIKPDLLKKGFELVNRE---GLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERI 202 (210)
Q Consensus 138 --~~~~P~---------~f~~~~l~~~~~~~~~~---~~~~~d~~~~~~~~g~~v~~v~~~-~~~~dIdt~~Dl~~a~~~ 202 (210)
..++|+ +|+...+..... .... ..++.+... +...|.++..+..+ ..++|||||+||..|+.+
T Consensus 173 ~~~~~~p~~~~~~~giy~~~~~~l~~~~~-~~~~~~~~~e~~~~~~-~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 250 (262)
T 1vic_A 173 VQKVQLSDAYLRHIGIYAYRAGFIKQYVQ-WAPTQLENLEKLEQLR-VLYNGERIHVELAKEVPAVGVDTAEDLEKVRAI 250 (262)
T ss_dssp GGGCCCCTTCEEEEEEEEEEHHHHHHHHH-SCCCHHHHHHTCTTHH-HHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHH
T ss_pred ccccccccceEEEEEEEEeeHHHHHHHHh-CCCCchhhhhhHHHHH-HHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHH
Confidence 124553 344444433211 0000 000111111 22358889888877 689999999999999999
Q ss_pred hhccc
Q 028320 203 LNLSS 207 (210)
Q Consensus 203 ~~~~~ 207 (210)
++.+.
T Consensus 251 l~~~~ 255 (262)
T 1vic_A 251 LAANG 255 (262)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 98553
No 26
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=99.79 E-value=3.8e-19 Score=136.37 Aligned_cols=169 Identities=14% Similarity=0.171 Sum_probs=107.0
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccCCCCEE
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~~~d~v 80 (210)
||+|++++|+|||+|+++++.++ +|+||++++. +.+.+.++ .++ +..... ..+..+|+..|++.+. +.+.+
T Consensus 19 ~K~l~~i~g~pll~~~l~~l~~~----~ivvv~~~~~-~~~~~~~~-~~~-~v~~~~~~~G~~~si~~al~~~~-~~~~v 90 (197)
T 3d5n_A 19 DKLLAKIDNTPIIMRTIRIYGDL----EKIIIVGKYV-NEMLPLLM-DQI-VIYNPFWNEGISTSLKLGLRFFK-DYDAV 90 (197)
T ss_dssp SGGGSBSSSSBHHHHHHHHTTTS----BCCEEECTTH-HHHGGGCT-TSC-EEECTTGGGCHHHHHHHHHHHTT-TSSEE
T ss_pred CeeeCEeCceEHHHHHHHHHHhC----CEEEEECCCH-HHHHHHhc-CCE-EEECCCCCCCHHHHHHHHHHhhc-cCCcE
Confidence 89999999999999999999765 7888888763 33444333 343 222111 2345789999999986 24789
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCcccChHHHHHHHHHHHhc
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVIKPDLLKKGFELVNRE 160 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~~f~~~~l~~~~~~~~~~ 160 (210)
++++||+||++++.++++++.+ ..++.+ ++|..+ |. ..+|.+|+...+..+.. . .
T Consensus 91 lv~~~D~P~i~~~~i~~l~~~~-~~~~~~-~~~~~~--------g~------------~~~P~~~~~~~l~~l~~-l--~ 145 (197)
T 3d5n_A 91 LVALGDMPFVTKEDVNKIINTF-KPNCKA-VIPTHK--------GE------------RGNPVLISKSLFNEIEK-L--R 145 (197)
T ss_dssp EEEETTCCCSCHHHHHHHHHTC-CTTCSE-EEEEET--------TE------------ECSCEEEEHHHHHHHHH-C--C
T ss_pred EEEeCCccccCHHHHHHHHHHh-cCCCcE-EEEEeC--------Cc------------ccCCEEECHHHHHHHHc-c--C
Confidence 9999999999999999999876 433322 223221 10 12688898877666542 2 2
Q ss_pred CCCCCcHHHHHHhCCCCeEEEecC--CCCccccChhhHHHHHHHhhc
Q 028320 161 GLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 161 ~~~~~d~~~~~~~~g~~v~~v~~~--~~~~dIdt~~Dl~~a~~~~~~ 205 (210)
+ .++...+++..+.++..+..+ ...+|||||+||+.++.++..
T Consensus 146 g--~~~~~~~l~~~~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~~~ 190 (197)
T 3d5n_A 146 G--DVGARVILNKIKIEELCFIECSEGVLIDIDKKEDLMRLRDFHPL 190 (197)
T ss_dssp T--TCCTHHHHTTSCGGGEEEEECCGGGTCCTTTC------------
T ss_pred C--CccHHHHHHhCccCeEEEEcCCCCcccCCCCHHHHHHHHHhhcc
Confidence 2 134566777777667766654 356899999999999887653
No 27
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=99.79 E-value=4e-18 Score=138.43 Aligned_cols=200 Identities=16% Similarity=0.225 Sum_probs=133.1
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~--~~~~~~si~~~l~~~~~ 75 (210)
+||+|+|++|||||.|+++++..++ +++|+|++++...+.+.+.+.+ ++..+.++.+ ..+...++..|++.+.
T Consensus 24 ~pK~llpi~gkpli~~~l~~l~~~g-i~~Iivv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~- 101 (295)
T 1lvw_A 24 VSKQLLPIYDKPMIYYPLSVLMLAG-IRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIG- 101 (295)
T ss_dssp SCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTSEEEEEECSSCCCGGGHHHHTHHHHT-
T ss_pred CCceecEECCeeHHHHHHHHHHHCC-CCeEEEEeccchHHHHHHHhhhccccCceEEEeeCCCCCChHHHHHHHHHHhC-
Confidence 4899999999999999999999886 8999998875444567777764 6666655533 2345778888888875
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEeeecccce----EEccCCCceeeec-----CccCeeeecCCcc
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATI----KEANSESFVVRTL-----DRKTLWEMQTPQV 144 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~--~~~~~~~~~~~~~~----~~~~~~g~v~~~~-----~r~~~~~~~~P~~ 144 (210)
+.++++++ ||+||.+ ..+.++++.+.+ .++.+.+.++.++. ...+++|.+..+. +++. +...++++
T Consensus 102 ~~~~~lv~-gD~~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~g~v~~~~ekp~~~~s~-~~~~Giy~ 178 (295)
T 1lvw_A 102 DSKVALVL-GDNVFYG-HRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSEGRVISIEEKPSRPKSN-YVVPGLYF 178 (295)
T ss_dssp TSCEEEEE-TTCCEEC-TTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTTSBEEEEEESCSSCSCS-EECCSEEE
T ss_pred CCcEEEEE-CCccccC-cCHHHHHHHHHHcCCCcEEEEEECCCcccCCEEEECCCCcEEEEEECCCCCCCC-EEEEEeEE
Confidence 33555555 9999998 689999988754 34556666776652 2224466665432 2333 55567788
Q ss_pred cChHHHHHHHHHHH--hcCCCCCcHHHHHHhCCCCeEEEecCC-CCccccChhhHHHHHHHhhc
Q 028320 145 IKPDLLKKGFELVN--REGLEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 145 f~~~~l~~~~~~~~--~~~~~~~d~~~~~~~~g~~v~~v~~~~-~~~dIdt~~Dl~~a~~~~~~ 205 (210)
|+...+..+..... ...++++|....+...|.....+.+.. .++||+|++||..|+.+++.
T Consensus 179 f~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 242 (295)
T 1lvw_A 179 YDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIET 242 (295)
T ss_dssp ECTTHHHHHHHCCCCTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHHH
T ss_pred EcHHHHHHHHhcCCcccCceeHHHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHHHHHH
Confidence 98877544322110 112455655444444553222233333 58999999999999998863
No 28
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=99.78 E-value=2.9e-18 Score=139.17 Aligned_cols=199 Identities=17% Similarity=0.213 Sum_probs=132.1
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~--~~~~~~si~~~l~~~~~ 75 (210)
+||+|+|++|||||.|+++++..++ +++|+|++.+...+.+.+.+.+ ++.++.++.+ ..+...++..|++.+.
T Consensus 23 ~pK~llpi~gkpli~~~l~~l~~~g-i~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~- 100 (293)
T 1fxo_A 23 ISKQLLPVYDKPMIYYPLSTLMLAG-IREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIG- 100 (293)
T ss_dssp SCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCGGGHHHHTHHHHT-
T ss_pred CCceeCeECCEeHHHHHHHHHHHCC-CCEEEEEeccccHHHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHHhC-
Confidence 4899999999999999999999987 8999988865433566777665 6666655533 2344778888888875
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEeeecccce----EEccCCCceeeec-----CccCeeeecCCcc
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATI----KEANSESFVVRTL-----DRKTLWEMQTPQV 144 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~--~~~~~~~~~~~~~~----~~~~~~g~v~~~~-----~r~~~~~~~~P~~ 144 (210)
.+.++++.||+||.+ ..+.++++.+.+ .++.+.+.++.++. ...+++|.+..+. +++. +....+++
T Consensus 101 -~~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~g~v~~~~ekp~~~~s~-~~~~Giy~ 177 (293)
T 1fxo_A 101 -NDLSALVLGDNLYYG-HDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSN-YAVTGLYF 177 (293)
T ss_dssp -TSEEEEEETTEEEEC-TTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTTSCEEEEEESCSSCSSS-EEEEEEEE
T ss_pred -CCCEEEEECChhccC-ccHHHHHHHHHhcCCCcEEEEEECCCcccCcEEEECCCCcEEEEEECCCCCCCC-eEEEEEEE
Confidence 244555559999998 689999988753 34556666776652 1234467665432 2333 45556788
Q ss_pred cChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCC-CCccccChhhHHHHHHHhhc
Q 028320 145 IKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSY-TNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 145 f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~v~~v~~~~-~~~dIdt~~Dl~~a~~~~~~ 205 (210)
|+...+..+ .... ...++++|....+...|.....+.+.. .++||+|++||..|+.+++.
T Consensus 178 ~~~~~l~~~-~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 241 (293)
T 1fxo_A 178 YDQQVVDIA-RDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIAT 241 (293)
T ss_dssp ECTTHHHHH-HHCCCCTTSSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHHH
T ss_pred EcHHHHHHH-HhcCcccCCceeHHHHHHHHHhcCCeEEEEeCCCCEEEcCCCHHHHHHHHHHHHH
Confidence 888765443 2211 112445554444444553222344434 58999999999999998763
No 29
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=99.76 E-value=1.2e-17 Score=133.80 Aligned_cols=200 Identities=11% Similarity=0.050 Sum_probs=131.8
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh---hcCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE---KINVDLKFSLP--GKERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~---~~~~~v~~~~~--~~~~~~si~~~l~~~~~ 75 (210)
+||+|+|++|+|||+|+++++.+++ +++|+|+++++....+.+.+. .++..+.++.. ..+..+++..|++.++
T Consensus 45 ~pK~ll~i~g~pli~~~l~~l~~~g-~~~iivv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~- 122 (269)
T 4ecm_A 45 TNKHLLPVGRYPMIYHAVYKLKQCD-ITDIMIITGKEHMGDVVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCEDFVG- 122 (269)
T ss_dssp SCGGGSEETTEEHHHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCHHHHHHTTHHHHT-
T ss_pred CCceecEECCEEHHHHHHHHHHHCC-CCEEEEECChhhHHHHHHHHhhccccCceEEEeeCCccCcHHHHHHHHHHhcC-
Confidence 4899999999999999999999986 899999999765445556554 24556655533 2345788888888875
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEeeecccc----eEEccCCCceeeecCccC---eeeec-CCccc
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKAT----IKEANSESFVVRTLDRKT---LWEMQ-TPQVI 145 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~--~~~~~~~~~~~----~~~~~~~g~v~~~~~r~~---~~~~~-~P~~f 145 (210)
.+.++++.||+|+. .+++++++.+...+ +++.+.++.++ ....+ +|.+..+.++.. .+... .-++|
T Consensus 123 -~~~~lv~~~D~~~~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d-~g~v~~~~ekp~~~~~~~~~~Giy~~ 198 (269)
T 4ecm_A 123 -NDRMVVILGDNIFS--DDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQ-NRKIIEIEEKPKEPKSSYAVTGIYLY 198 (269)
T ss_dssp -TSEEEEEETTEEES--SCSHHHHHHHHTSSSSEEEEEEECSCGGGSEEEEEE-TTEEEEEEESCSSCSCSEEEEEEEEE
T ss_pred -CCcEEEEeCCccCc--cCHHHHHHHHHhcCCCeEEEEEECCCCCCceEEEEc-CCEEEEEEECCCCCCCcEEEEEEEEE
Confidence 57889999999985 78999998887654 34555555443 11223 466654432210 11111 12456
Q ss_pred ChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcccC
Q 028320 146 KPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLSSE 208 (210)
Q Consensus 146 ~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~~ 208 (210)
+...| ..+.... ...+++++....+...| ++.....+..++|||||+||..|+..+...+.
T Consensus 199 ~~~~l-~~l~~~~~~~~ge~~l~d~l~~l~~~g-~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~~~ 262 (269)
T 4ecm_A 199 DSKVF-SYIKELKPSARGELEITDINNWYLKRG-VLTYNEMSGWWTDAGTHVSLQRANALARDINF 262 (269)
T ss_dssp CTTHH-HHHTSCCBCTTSCBCHHHHHHHHHHTT-CEEEEECCSCEEECSSHHHHHHHHHHTTTCCC
T ss_pred CHHHH-HhhhhcCCCCCCeeeHHHHHHHHHHcC-CEEEEEeCCEEEeCCCHHHHHHHHHHHHhccc
Confidence 65554 3333211 11244455444444556 67766666688999999999999999886654
No 30
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=99.76 E-value=4.6e-17 Score=125.81 Aligned_cols=170 Identities=18% Similarity=0.265 Sum_probs=110.9
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe-cCCccHHHHHHHHHHcccCCCCE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-LPGKERQDSVYSGLQEVDFNSEL 79 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~-~~~~~~~~si~~~l~~~~~~~d~ 79 (210)
.||+|++++|+|||+|+++++.++ +|+||++++ +.+..+.+.++..+..- ..+.++..|+..|++.+ .+.
T Consensus 16 ~~K~ll~~~G~pli~~~~~~l~~~----~vvvv~~~~--~~~~~~~~~~~~~~v~d~~~~~G~~~si~~gl~~~---~~~ 86 (208)
T 3ngw_A 16 MEKTEVMLCGKKLIEWVLEKYSPF----QTVFVCRDE--KQAEKLSSRYEAEFIWDLHKGVGSIAGIHAALRHF---GSC 86 (208)
T ss_dssp SCGGGCEETTEEHHHHHHHHHTTS----EEEEECSSH--HHHHHHHTTSCSCEECCTTCCCSHHHHHHHHHHHH---SSE
T ss_pred CCCcccEECCeeHHHHHHHHhcCC----CEEEEECCH--HHHHHHHHhcCCeEEecCCCCCChHHHHHHHHHHc---CCC
Confidence 389999999999999999999865 899998753 33444444466554321 12456789999999988 478
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCc--ccChHHHHHHHHHH
Q 028320 80 VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFELV 157 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~--~f~~~~l~~~~~~~ 157 (210)
+ ++.||+||++++.++++++.+...+..+. +|. +. .+ .|- +|+...+..+....
T Consensus 87 v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v-~~~-~g------~~---------------~Pl~al~~~~~~~~l~~~l 142 (208)
T 3ngw_A 87 V-VAAIDMPFVKPEVLEHLYKEGEKAGCDAL-IPK-HD------YP---------------EPLLAYYAESAADELERAI 142 (208)
T ss_dssp E-EEETTCTTCCHHHHHHHHHHHHHHTCSEE-EEE-SS------SB---------------CTTEEEECGGGHHHHHHHH
T ss_pred E-EEECCccCCCHHHHHHHHHHhhcCCCCEE-EEc-CC------Ce---------------eEEEEEEcHHHHHHHHHHH
Confidence 8 99999999999999999998874333221 122 21 11 242 36655554433322
Q ss_pred HhcCCCCCcHHHHHHhCCCCeEEEecC---------CCCccccChhhHHHHHHHhhcccC
Q 028320 158 NREGLEVTDDVSIVEHLKHPVYITEGS---------YTNIKVTTPDDLLIAERILNLSSE 208 (210)
Q Consensus 158 ~~~~~~~~d~~~~~~~~g~~v~~v~~~---------~~~~dIdt~~Dl~~a~~~~~~~~~ 208 (210)
..|- ..-..+++..+ +..+..+ ...++||||+||+.++++++...-
T Consensus 143 -~~G~--~~~~~~l~~~~--~~~v~~~~~~~~d~~~~~~~ninTpeDl~~~~~~~~~~~~ 197 (208)
T 3ngw_A 143 -LQGI--RKILVPLERLN--VVYYPVEKLRKFDKELISFFNINTPDDLKRAEEICSKMST 197 (208)
T ss_dssp -HTTC--CCTHHHHHTSC--EEEEEGGGGTTTCTTCGGGCCCCSHHHHHHHHHHHHHC--
T ss_pred -HcCC--CCHHHHHHhCC--EEEecHHHhcccCcccceEEecCCHHHHHHHHHHhccccc
Confidence 1221 11234455443 4444332 246899999999999999876554
No 31
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=99.72 E-value=1.5e-17 Score=135.07 Aligned_cols=198 Identities=14% Similarity=0.220 Sum_probs=128.5
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecC--CccHHHHHHHHHHcccC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLP--GKERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~--~~~~~~si~~~l~~~~~ 75 (210)
+||+|+|++|||||.|+++++..++ +++|+|++++...+.+.+.+.+ +|.++.++.+ ..+..+++..|++.+.
T Consensus 24 ~pK~llpi~gkpli~~~l~~l~~~g-i~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~- 101 (296)
T 1mc3_A 24 VSKQLLPIYDKPMIYYPLSVLMLAG-IREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLN- 101 (296)
T ss_dssp SCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCSTHHHHHTHHHHT-
T ss_pred CCceeeEECCeeHHHHHHHHHHhCC-CCcEEEEechhHHHHHHHHHhcccccCceEEEeccCCCCCHHHHHHHHHHHhC-
Confidence 4899999999999999999999886 8999999875444566777754 5666655432 2234678888888875
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEeeecccceE----EccCCCceeeecC-----ccCeeeecCCcc
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIK----EANSESFVVRTLD-----RKTLWEMQTPQV 144 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~~~~--~~~~~~~~~~~~~~~----~~~~~g~v~~~~~-----r~~~~~~~~P~~ 144 (210)
+.++++++ ||+||.+ ..+.++++.+.. .++.+.+.++.++.. ..+++|.+..+.+ ++. +....+++
T Consensus 102 ~~~~~lv~-gD~~~~~-~~l~~~l~~~~~~~~~~~v~~~~v~dp~~yg~v~~d~~g~v~~~~ekp~~~~s~-~~~~Giy~ 178 (296)
T 1mc3_A 102 GEPSCLVL-GDNIFFG-QGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEKPKQPKSN-WAVTGLYF 178 (296)
T ss_dssp TSCEEEEE-TTEEEEC-SSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETTEEEEECCBSCSSCSCS-EEEEEEEE
T ss_pred CCCEEEEE-CCccccc-cCHHHHHHHHHHcCCCCEEEEEECCCcccCCEEEECCCCcEEEEEECCCCCCCC-EEEEEEEE
Confidence 23455555 9999998 688889887743 345566667666531 1244566654322 222 34445678
Q ss_pred cChHHHHHHHHHHH--hc-CCCCCcHHHHHHhCCCCeEE-EecCC-CCccccChhhHHHHHHHhhc
Q 028320 145 IKPDLLKKGFELVN--RE-GLEVTDDVSIVEHLKHPVYI-TEGSY-TNIKVTTPDDLLIAERILNL 205 (210)
Q Consensus 145 f~~~~l~~~~~~~~--~~-~~~~~d~~~~~~~~g~~v~~-v~~~~-~~~dIdt~~Dl~~a~~~~~~ 205 (210)
|+...+.. +.... .. .++++|....+...| ++.+ +.+.. .++||+|++||..++.+++.
T Consensus 179 ~~~~~l~~-~~~~~~~~~ge~~~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 242 (296)
T 1mc3_A 179 YDSKVVEY-AKQVKPSERGELEITSINQMYLEAG-NLTVELLGRGFAWLDTGTHDSLIEASTFVQT 242 (296)
T ss_dssp CCTHHHHH-HHSCCCCSSSSCCHHHHHHHHHHTT-CEEEEECCTTCEEEECCSHHHHHHHHHHHHH
T ss_pred EcHHHHHH-HHhcCccccCCccHHHHHHHHHhcC-CeEEEEeCCCCEEEeCCCHHHHHHHHHHHHH
Confidence 88766543 22211 11 244555444444445 3443 33333 48999999999999998763
No 32
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=99.70 E-value=6.1e-17 Score=130.41 Aligned_cols=199 Identities=11% Similarity=0.126 Sum_probs=128.6
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh------------------------cCCcEEEe
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK------------------------INVDLKFS 56 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~------------------------~~~~v~~~ 56 (210)
+||+|+|++|||||+|+++++.+++ +++|+|++++.. +.+.+.+.+ ++..+.++
T Consensus 23 ~pK~ll~i~gkpli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 100 (281)
T 3juk_A 23 IPKEMLPIVDKPLIQYAVEEAMEAG-CEVMAIVTGRNK-RSLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYV 100 (281)
T ss_dssp SCGGGCBSSSSBHHHHHHHHHHHHT-CCEEEEEECTTH-HHHHHHTSCCC--------CCHHHHHHHHHHHHHHCEEEEE
T ss_pred CCcccceECCEEHHHHHHHHHHhCC-CCEEEEEecCCH-HHHHHHHhcchhhhhhhhcccchhhhhhhhccccCccEEEE
Confidence 4899999999999999999999986 899999999765 455555433 23455555
Q ss_pred cC--CccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHH----HHHHHHHHHHhcCC-eEEeeec--ccc----eEEccC
Q 028320 57 LP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSK----DVQKVLMDALRVGA-AVLGVPA--KAT----IKEANS 123 (210)
Q Consensus 57 ~~--~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~----~i~~~i~~~~~~~~-~~~~~~~--~~~----~~~~~~ 123 (210)
.+ ..+..+++..|+..+. .+.++++.||+ +++.+ .++++++.+...++ .+.+.++ .++ +...++
T Consensus 101 ~~~~~~Gt~~al~~a~~~l~--~~~~lv~~~D~-~~~~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~g~v~~~~ 177 (281)
T 3juk_A 101 RQKQMKGLGHAILTGEALIG--NEPFAVILADD-LCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGEW 177 (281)
T ss_dssp ECSSCCCHHHHHHHTHHHHC--SSCEEEECTTE-EEECTTSCCHHHHHHHHHHHHCSCEEEEEECCTTTGGGSEEEEEEE
T ss_pred ecCCCCCcHHHHHHHHHHcC--CCCEEEEeCCe-eccCccchHHHHHHHHHHHHcCCCEEEEEEechhhcccCCEEEecc
Confidence 43 2345788999998885 36788999999 88888 89999998876654 3334333 222 112232
Q ss_pred --CC--ceeeecCccC-----eeeec-CCcccChHHHHHHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCCCCccc
Q 028320 124 --ES--FVVRTLDRKT-----LWEMQ-TPQVIKPDLLKKGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIKV 190 (210)
Q Consensus 124 --~g--~v~~~~~r~~-----~~~~~-~P~~f~~~~l~~~~~~~~---~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dI 190 (210)
+| .+..+.+... ..... .-++|+...| ..+.... ...+++++....+...| ++.....+..++||
T Consensus 178 ~~~g~~~v~~~~Ekp~~~~~~~~~~~~GiYi~~~~~l-~~l~~~~~~~~~e~~l~d~i~~l~~~~-~v~~~~~~g~~~dI 255 (281)
T 3juk_A 178 LEEGVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIF-EILSETKPGKNNEIQITDALRTQAKRK-RIIAYQFKGKRYDC 255 (281)
T ss_dssp EETTEEEEEEEEESCCTTTCSCSEEEEEEEEECTTHH-HHHHTCCCCGGGSCCHHHHHHHHHHHS-CCEEEECCSEEEET
T ss_pred CCCCceEEeEEEECcCCCCCCcceeEEEEEEECHHHH-HHHHhcCCCCCCceeHHHHHHHHHhcC-CEEEEEeCCeEEcC
Confidence 45 5654432110 01111 1245565554 3343321 12355555444444445 67666556678999
Q ss_pred cChhhHHHHHHHhhcc
Q 028320 191 TTPDDLLIAERILNLS 206 (210)
Q Consensus 191 dt~~Dl~~a~~~~~~~ 206 (210)
+||+||..|+..+...
T Consensus 256 gt~~d~~~a~~~l~~~ 271 (281)
T 3juk_A 256 GSVEGYIEASNAYYKK 271 (281)
T ss_dssp TSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999877643
No 33
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.70 E-value=1.7e-16 Score=130.45 Aligned_cols=200 Identities=12% Similarity=0.123 Sum_probs=125.7
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh------------------------cCCcEEEe
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK------------------------INVDLKFS 56 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~------------------------~~~~v~~~ 56 (210)
+||+|++++|+|||+|+++++.+++ +++|+|++++.. +.+.+.+.+ ++..+.++
T Consensus 33 ~pK~ll~i~gkpli~~~l~~l~~~g-i~~iivv~~~~~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~i~~~ 110 (323)
T 2pa4_A 33 VPKELLPVVDTPGIELIAAEAAELG-ATRLAIITAPNK-AGVLAHFERSSELEETLMERGKTDQVEIIRRAADLIKAVPV 110 (323)
T ss_dssp SCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECTTC-HHHHHTTSCCHHHHHHHHHTTCHHHHHHTTHHHHHCEEEEE
T ss_pred CCceeeeECCEEHHHHHHHHHHhCC-CCEEEEEecCcH-HHHHHHHhccchhhhhhhccchhhhhhhhhccccCcceEEE
Confidence 4899999999999999999999886 899999999865 344443321 23445444
Q ss_pred cC--CccHHHHHHHHHHcccCCCCEEEEEeCCCCCCC-HHHHHHHHHHHHhcCCe-EEeeecc--c--ce--EEcc----
Q 028320 57 LP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVL-SKDVQKVLMDALRVGAA-VLGVPAK--A--TI--KEAN---- 122 (210)
Q Consensus 57 ~~--~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~-~~~i~~~i~~~~~~~~~-~~~~~~~--~--~~--~~~~---- 122 (210)
.. ..+..+++..|+..+..+.+.++++.||+|+ + +.+++.+++.+...+++ +.+.++. + .. ...+
T Consensus 111 ~~~~~~Gt~~al~~a~~~l~~~~d~~lv~~~D~~~-~~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~~yg~v~~d~~~~ 189 (323)
T 2pa4_A 111 TQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLV-LPTGVMERMAQVRAEFGGSVLCAVEVSEADVSKYGIFEIEADTK 189 (323)
T ss_dssp ECSSCCCHHHHHHTTGGGSCSSCCEEEEECTTEEE-ESSCHHHHHHHHHHTTCSEEEEEEECCGGGGGGSEEEEEEECCS
T ss_pred eCCccCCcHHHHHHHHHHhcCCCCeEEEEeCCccc-CchHHHHHHHHHHHhcCCcEEEEEEecccccCCccEEEeCCccc
Confidence 32 2345788888888875334568999999999 7 79999999988766653 3334442 1 11 1112
Q ss_pred CCC--ceeeecCcc------CeeeecCCcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCCCcccc
Q 028320 123 SES--FVVRTLDRK------TLWEMQTPQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVT 191 (210)
Q Consensus 123 ~~g--~v~~~~~r~------~~~~~~~P~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dId 191 (210)
++| .+..+.+.. ..+..-.-++|+.+.| ..+..... ..+++++....+...|.++..+..+..++|||
T Consensus 190 ~~~~~~V~~~~Ekp~~~~~~~~~~~~GiY~~~~~~~-~~l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DIg 268 (323)
T 2pa4_A 190 DSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIF-DALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLG 268 (323)
T ss_dssp STTEEEEEEEEESCCTTTCSCSEEEEEEEEEETHHH-HHHHHCCCCGGGCCCHHHHHHHHHHTTCCEEEEECCSEEEECS
T ss_pred CCCceeEEEEEECCCCccccccEEEEEEEEECHHHH-HHHHhhCCCCCCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeCC
Confidence 233 454433211 0011111235665543 33433211 12444544444445677888776666789999
Q ss_pred ChhhHHHHHHHhh
Q 028320 192 TPDDLLIAERILN 204 (210)
Q Consensus 192 t~~Dl~~a~~~~~ 204 (210)
||+||..++..+.
T Consensus 269 t~~dl~~a~~~~~ 281 (323)
T 2pa4_A 269 NPGGYIPACVDFG 281 (323)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999986544
No 34
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=99.70 E-value=2e-16 Score=121.49 Aligned_cols=165 Identities=13% Similarity=0.093 Sum_probs=104.0
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe--cCCccHHHHHHHHHHcccCCCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS--LPGKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~--~~~~~~~~si~~~l~~~~~~~d 78 (210)
.||+|++++|+|||+|+++++.. .+++|+||++++. .. ..+++..+... .++.+...++..|++.++ .+
T Consensus 23 ~~K~ll~i~G~pli~~~l~~l~~--~~~~ivvv~~~~~-~~----~~~~~~~~v~~~~~~~~G~~~si~~~l~~~~--~~ 93 (201)
T 1e5k_A 23 VDKGLLELNGKPLWQHVADALMT--QLSHVVVNANRHQ-EI----YQASGLKVIEDSLADYPGPLAGMLSVMQQEA--GE 93 (201)
T ss_dssp SCGGGSEETTEEHHHHHHHHHHH--HCSCEEEECSSSH-HH----HHTTSCCEECCCTTCCCSHHHHHHHHHHHCC--SS
T ss_pred CCCceeeECceeHHHHHHHHHHh--hCCEEEEEcCCcH-HH----HhhcCCeEEecCCCCCCCHHHHHHHHHHhCC--CC
Confidence 48999999999999999999984 3799999998764 22 22355443221 222567899999999985 58
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccceEEccCCCceeeecCccCeeeecCCc--ccChHHHHHHHHH
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ--VIKPDLLKKGFEL 156 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~r~~~~~~~~P~--~f~~~~l~~~~~~ 156 (210)
.++++.||+||++++.++.+++. ..++.+ +++.. ++.. .|- +|+...+..+...
T Consensus 94 ~vlv~~~D~P~i~~~~i~~l~~~--~~~~~~-~~~~~--------~~~~-------------~Pl~~~~~~~~~~~l~~~ 149 (201)
T 1e5k_A 94 WFLFCPCDTPYIPPDLAARLNHQ--RKDAPV-VWVHD--------GERD-------------HPTIALVNRAIEPLLLEY 149 (201)
T ss_dssp EEEEEETTCTTCCTTHHHHHHHT--CTTCSE-EEEEC--------SSCE-------------EEEEEEEETTHHHHHHHH
T ss_pred cEEEEeCCcCcCCHHHHHHHHhh--cCCCCE-EEEec--------CCcc-------------ccEEEEEcHHHHHHHHHH
Confidence 89999999999999999999986 233322 22211 1110 121 4554444433222
Q ss_pred HHhcCCCCCcHHHHHHhCCCCeEEEe-cCCCCccccChhhHHHHHH
Q 028320 157 VNREGLEVTDDVSIVEHLKHPVYITE-GSYTNIKVTTPDDLLIAER 201 (210)
Q Consensus 157 ~~~~~~~~~d~~~~~~~~g~~v~~v~-~~~~~~dIdt~~Dl~~a~~ 201 (210)
. ..|- .....+++..+.....+. .....+|||||+||+.++.
T Consensus 150 l-~~g~--~~~~~~l~~~~~~~v~~~~~~~~~~didTpeDl~~~~~ 192 (201)
T 1e5k_A 150 L-QAGE--RRVMVFMRLAGGHAVDFSDHKDAFVNVNTPEELARWQE 192 (201)
T ss_dssp H-HTTC--CCHHHHHHHTTCEEEECTTSTTTTCCCCSHHHHHTTC-
T ss_pred H-HcCC--ccHHHHHHHCCcEEEecCCCCCccccCCCHHHHHHHHH
Confidence 1 1221 123445555443322222 2346789999999987643
No 35
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=99.70 E-value=1.3e-15 Score=132.11 Aligned_cols=204 Identities=14% Similarity=0.168 Sum_probs=148.5
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHh----hcCCcEEEecCC--ccHHHHHHHHHHccc
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE----KINVDLKFSLPG--KERQDSVYSGLQEVD 74 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~----~~~~~v~~~~~~--~~~~~si~~~l~~~~ 74 (210)
.||+|+|++|||||+|+++++.+++ +++|+|++++.. +.+++.+. .++..+.++.+. .+..++++.+++.+.
T Consensus 30 ~pK~l~pv~gkp~i~~~l~~~~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~~~~~i~~~~q~~~lGTa~Av~~a~~~l~ 107 (501)
T 3st8_A 30 TPKVLHTLAGRSMLSHVLHAIAKLA-PQRLIVVLGHDH-QRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALP 107 (501)
T ss_dssp SCGGGCEETTEEHHHHHHHHHHHHC-CSEEEEEECTTH-HHHHHHHHHHHHHHTSCCEEEECSSCCCHHHHHHHHHTTSC
T ss_pred CCHHHeEECChhHHHHHHHHHHhCC-CCEEEEEeCCCH-HHHHHHHHHHHHhcCCcEEEEEcCCCCCcHHHHHHHHHHhc
Confidence 4899999999999999999999996 899999999875 45555543 456677776542 235889999999996
Q ss_pred CC-CCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecccce----EEccCCCceeeecCcc-------Ceeeec
Q 028320 75 FN-SELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKATI----KEANSESFVVRTLDRK-------TLWEMQ 140 (210)
Q Consensus 75 ~~-~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~~~----~~~~~~g~v~~~~~r~-------~~~~~~ 140 (210)
.+ .+.++++.+|.||++.+.+.++++.....++ .+...++.+|. ...+++|.+..+++.. .+..++
T Consensus 108 ~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp~~yG~i~~~~~g~v~~ivEk~~~~~~~~~i~~in 187 (501)
T 3st8_A 108 DDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVN 187 (501)
T ss_dssp TTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTTCCEEEEECGGGCCHHHHHCCEEE
T ss_pred cccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccCCchhccccccccceeEEeeccccCCChhhccceeee
Confidence 43 4689999999999999999999998876654 45566666552 2225567776665431 122222
Q ss_pred C-CcccChHHHHHHHHHHHh----cCCCCCcHHHHHHhCCCCeEEEecC--CCCccccChhhHHHHHHHhhcc
Q 028320 141 T-PQVIKPDLLKKGFELVNR----EGLEVTDDVSIVEHLKHPVYITEGS--YTNIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 141 ~-P~~f~~~~l~~~~~~~~~----~~~~~~d~~~~~~~~g~~v~~v~~~--~~~~dIdt~~Dl~~a~~~~~~~ 206 (210)
+ -++|....|..++..... .++|++|...++...|..+.....+ ....+++++.++..++..++.+
T Consensus 188 ~Giy~f~~~~l~~~l~~l~~~n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r 260 (501)
T 3st8_A 188 AGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRR 260 (501)
T ss_dssp EEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred ceeeeecchhHHHhhhhhcccccccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhh
Confidence 2 256777777776654332 2367898888888888888765543 3557899999999988877654
No 36
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=99.68 E-value=7.3e-16 Score=125.56 Aligned_cols=200 Identities=15% Similarity=0.120 Sum_probs=130.7
Q ss_pred Cccceec--CCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh---cCCcEEEecCC-----------------
Q 028320 2 PKQYLPL--LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK---INVDLKFSLPG----------------- 59 (210)
Q Consensus 2 ~K~l~~i--~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~---~~~~v~~~~~~----------------- 59 (210)
||+|+++ +|+|||+|+++++.+++ +++|+|++++...+.+.+.+.+ .+.++.++.+.
T Consensus 22 ~K~l~~ig~~g~pli~~~l~~~~~~~-~~~i~vv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 100 (303)
T 3pnn_A 22 LKQLDGIGPGGDTIMDYSVYDAIRAG-FGRLVFVIRHSFEKEFREKILTKYEGRIPVELVFQELDRLPEGFSCPEGREKP 100 (303)
T ss_dssp BCCCCCCSTTSCCHHHHHHHHHHHHT-CCEEEEEECGGGHHHHHHHTHHHHTTTSCEEEEECCTTCCCTTCCCCTTCCSC
T ss_pred CceEeEcCCCCeeHHHHHHHHHHHCC-CCeEEEEcCchHHHHHHHHHHHHhccCCcEEEEeccccccccccccccccccc
Confidence 6999999 69999999999998886 8999999998743456555543 13455554332
Q ss_pred ccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHh---cCC--eEEeeecccc----------eEEccCC
Q 028320 60 KERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR---VGA--AVLGVPAKAT----------IKEANSE 124 (210)
Q Consensus 60 ~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~---~~~--~~~~~~~~~~----------~~~~~~~ 124 (210)
.+..+++..|++.++ +.++++.||. +++.+.++.+++.... .++ ++.+.++.++ +...+++
T Consensus 101 ~Gt~~al~~a~~~i~---~~~lV~~gD~-l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~~~G~v~~d~~ 176 (303)
T 3pnn_A 101 WGTNHAVLMGRDAIR---EPFAVINADD-FYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQVDEK 176 (303)
T ss_dssp CCHHHHHHTTTTTCC---SCEEEEESSC-BCCHHHHHHHHHHHHTTTTCSSEEEEEEEEGGGSCBTTBCEEEEEEEECTT
T ss_pred CCcHHHHHHHHHhcC---CCEEEEECCe-ecCHHHHHHHHHHHHHhccccCceEEEEEECCCccCccCceeeeeEeeCCC
Confidence 345778888887773 4567788999 7899999999998764 333 4445555444 2223446
Q ss_pred CceeeecCccCe----------------------eeecC-CcccChHHHHHHHHH--------HH---hcCCCCCcHHHH
Q 028320 125 SFVVRTLDRKTL----------------------WEMQT-PQVIKPDLLKKGFEL--------VN---REGLEVTDDVSI 170 (210)
Q Consensus 125 g~v~~~~~r~~~----------------------~~~~~-P~~f~~~~l~~~~~~--------~~---~~~~~~~d~~~~ 170 (210)
|.+..+.++... ..+.+ -++|+...|.. +.. .. +.+++++|....
T Consensus 177 g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~~~-l~~~~~~~l~~~~~~~~~e~~l~d~i~~ 255 (303)
T 3pnn_A 177 HLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDY-SEELFINFLNAHGQEPKSEFFIPFVVND 255 (303)
T ss_dssp SBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECTHHHHH-HHHHHHHHHHHHTTCSSCCCCHHHHHHH
T ss_pred CcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECHHHHHH-HHHHHHHHHHhcCCCcCCcEEhHHHHHH
Confidence 777654432111 01111 14455544332 222 11 122556766555
Q ss_pred HHhCCC-CeEEEecCCCCccccChhhHHHHHHHhhccc
Q 028320 171 VEHLKH-PVYITEGSYTNIKVTTPDDLLIAERILNLSS 207 (210)
Q Consensus 171 ~~~~g~-~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~~ 207 (210)
+...|. ++.....+..++||+||+||..|++.+++..
T Consensus 256 li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~~~ 293 (303)
T 3pnn_A 256 LIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRELT 293 (303)
T ss_dssp HHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHHHH
Confidence 555675 7887777778999999999999999988654
No 37
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=99.66 E-value=1.7e-15 Score=120.51 Aligned_cols=199 Identities=11% Similarity=0.065 Sum_probs=126.4
Q ss_pred CCccceecCCeehHHHHHHHHhc-CCCCCeEEEEeCCCCh--HHHHHHHhhcCCc---EEEecC-CccHHHHHHHHHHcc
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSR-MVEVKEIVVVCDPSYS--DIFEETKEKINVD---LKFSLP-GKERQDSVYSGLQEV 73 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~-~~~~~~ivVv~~~~~~--~~i~~~~~~~~~~---v~~~~~-~~~~~~si~~~l~~~ 73 (210)
+||+|+|++|||||+|+++++.+ ++ +++|+|++++... +.+.+.+++++.+ +....+ ..+..+|+..|+..+
T Consensus 20 ~PK~llpv~gkpli~~~l~~l~~~~g-i~~iivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~av~~a~~~l 98 (255)
T 4evw_A 20 QPKYMLEAHGQTLFEHSVNSFAAYFA-STPFLFIVRNVYDTAVFVREKATQLGIKQFYIAELHTETRGQAETVTLGLEEL 98 (255)
T ss_dssp SCGGGCEETTEEHHHHHHGGGGGGTT-TSCEEEEEESSTTHHHHHHHHHHHHTCSSEEEEEESSCCSSHHHHHHHHHHHH
T ss_pred CCccccEECCeEHHHHHHHHHhccCC-CceEEEEECchhhhHHHHHHHHHHcCCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 59999999999999999999998 55 8999999988642 3455555555532 222222 234488999999988
Q ss_pred c----CCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc---eEEccCCC--ceeeecCccCe-eeec-CC
Q 028320 74 D----FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT---IKEANSES--FVVRTLDRKTL-WEMQ-TP 142 (210)
Q Consensus 74 ~----~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~g--~v~~~~~r~~~-~~~~-~P 142 (210)
. ...+.++++.||. +++...+..+ ....++.+.+.++.++ ....+++| .|.++.+.... .... .-
T Consensus 99 ~~~~~~~~~~~lV~~gD~-l~~~~~~~~~---~~~~~~~i~~~~~~~p~yG~v~~d~~g~~~V~~i~EK~~~s~~~~~Gi 174 (255)
T 4evw_A 99 AKQGVDYQGSITVFNIDT-FRPNFVFPDI---SQHSDGYLEVFQGGGDNWSFAKPEHAGSTKVIQTAEKNPISDLCSTGL 174 (255)
T ss_dssp HHTTCCCCSCEEECCTTE-ECTTCCCCGG---GGSSSEEEEEEECCSSCSCEEEESSTTCCBEEEEESSSCSSSEEEEEE
T ss_pred hhcccCCCCcEEEEeCCE-EEecchhHHH---hhcCCcEEEEEecCCCceeEEEECCCCCeEEEEEEeccCccCcEEEeE
Confidence 2 2245688999998 7754444332 1223445555565544 12224456 77766553211 0111 22
Q ss_pred cccChH-HHHHHHHHHH--------hcCCCCCcHHHHHHhCCCCeEEEecC-CCCccccChhhHHHHHHHhh
Q 028320 143 QVIKPD-LLKKGFELVN--------REGLEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILN 204 (210)
Q Consensus 143 ~~f~~~-~l~~~~~~~~--------~~~~~~~d~~~~~~~~g~~v~~v~~~-~~~~dIdt~~Dl~~a~~~~~ 204 (210)
+.|+.. .|.+++.... +.++|++|....+...|.++.....+ ..++||+||+||+.+++.-+
T Consensus 175 Y~f~~~~~~~~~l~~~i~~~~~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~~~ 246 (255)
T 4evw_A 175 YHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQPQ 246 (255)
T ss_dssp EEESCHHHHHHHHHHHHTSCGGGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC--
T ss_pred EEECcHHHHHHHHHHHHhcccccccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhcCC
Confidence 456553 3444443211 23478898877777788888877654 68999999999999987654
No 38
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=99.66 E-value=8.6e-16 Score=120.46 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=69.5
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
.||+|++++|+|||+|+++++.+++ + +|+|++..+. +.+.+ + +.+ .++.++.+|+..|++.++ +.+
T Consensus 22 ~~K~l~~i~g~pll~~~l~~l~~~~-~-~ivvv~~~~~---i~~~~---~--~~~-~~~~g~~~~i~~a~~~~~---~~~ 87 (232)
T 2dpw_A 22 GSKALVPYRGRPMVEWVLEALYAAG-L-SPVYVGENPG---LVPAP---A--LTL-PDRGGLLENLEQALEHVE---GRV 87 (232)
T ss_dssp SBGGGSEETTEETHHHHHHHHHHTT-C-EEEEESCCSS---CSSCC---S--EEE-CCCSSHHHHHHHHHHTCC---SEE
T ss_pred CCceeeEECCEEHHHHHHHHHHhcC-C-EEEEEeChHH---Hhhhc---C--eEe-cCCCCHHHHHHHHHHHcC---CCE
Confidence 4899999999999999999999886 4 8888766522 22221 3 333 455677899999999885 789
Q ss_pred EEEeCCCCCCCHHHHHHHHH
Q 028320 81 CIHDSARPLVLSKDVQKVLM 100 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~ 100 (210)
++++||+||+++++++++++
T Consensus 88 lv~~~D~P~~~~~~i~~l~~ 107 (232)
T 2dpw_A 88 LVATGDIPHLTEEAVRFVLD 107 (232)
T ss_dssp EEEETTCTTCCHHHHHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHh
Confidence 99999999999999999998
No 39
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=99.64 E-value=1.5e-15 Score=123.22 Aligned_cols=197 Identities=12% Similarity=0.139 Sum_probs=116.8
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-----------------------cCCcEEEec
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-----------------------INVDLKFSL 57 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-----------------------~~~~v~~~~ 57 (210)
+||+|+|++|+|||+|+++++.+++ +++|+|++++.. +.+.+.+.+ .+..+.++.
T Consensus 35 ~pK~ll~i~gkpli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~i~~~~ 112 (297)
T 2ux8_A 35 MPKEMLPVVDRPLIQYAVDEAVEAG-IEQMIFVTGRGK-SALEDHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYVR 112 (297)
T ss_dssp SCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECTTC-HHHHHHTSCCHHHHHHHHTTTCCGGGGTTSCCSTTSEEEEE
T ss_pred CCceeeeECCeEHHHHHHHHHHhCC-CCEEEEEeCCCH-HHHHHHHhhhhhhhhhhhhccchhhhhhhcccCCCceEEEe
Confidence 4999999999999999999999886 899999999864 445554432 234555543
Q ss_pred C--CccHHHHHHHHHHcccCCCCEEEEEeCCCCCCC--HHHHHHHHHHHHhcCCe-EEeeec--ccc--eEEc--c--CC
Q 028320 58 P--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVL--SKDVQKVLMDALRVGAA-VLGVPA--KAT--IKEA--N--SE 124 (210)
Q Consensus 58 ~--~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~--~~~i~~~i~~~~~~~~~-~~~~~~--~~~--~~~~--~--~~ 124 (210)
. ..+..+++..|+..+. .+.++++.||+|+ + +.+++++++.+.+.+++ +.+.++ .++ ...+ + ++
T Consensus 113 ~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~-~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~~yg~v~~~~~~~ 189 (297)
T 2ux8_A 113 QQEPMGLGHAVWCARDIVG--DEPFAVLLPDDFM-FGQPGCLKQMVDAYNKVGGNLICAEEVPDDQTHRYGIITPGTQDG 189 (297)
T ss_dssp CCSCCCHHHHHHTTHHHHC--SSCEEEECTTEEE-ESSSCHHHHHHHHHHHHCSEEEEEC-----------CCCCCCBCS
T ss_pred CCCCCChHHHHHHHHHHcC--CCcEEEEeCCeec-CCChHHHHHHHHHHHhcCCCEEEEEecCcccCCCCCeEEecccCC
Confidence 2 2345788888888875 4778999999994 6 68999999988766543 333333 121 1111 1 13
Q ss_pred C--ceeeecCccC-----eeeec-CCcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCCCCccccCh
Q 028320 125 S--FVVRTLDRKT-----LWEMQ-TPQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTP 193 (210)
Q Consensus 125 g--~v~~~~~r~~-----~~~~~-~P~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~ 193 (210)
| .+..+.+... -+... .-++|+...+ ..+..... ..+++++....+...| ++..+..+..++||||+
T Consensus 190 ~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l-~~l~~~~~~~~~~~~l~d~i~~l~~~~-~v~~~~~~~~w~dIgt~ 267 (297)
T 2ux8_A 190 VLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVM-RILENQGKGAGGEIQLTDAMQRMIGDQ-PFHGVTFQGTRYDCGDK 267 (297)
T ss_dssp SEEEC--------------CCCEEEEEEECTHHH-HHHHHTC--------CCTTGGGGTTTS-CEEEEECSSEEEETTSH
T ss_pred CceeEEEEEECCCCCCCCccEEEEEEEEECHHHH-HHHHhhCCCCCCeeEHHHHHHHHHhcC-CEEEEEecceEEeCCCH
Confidence 3 3433322110 00000 1134665543 33433211 1244555433332234 77776666678999999
Q ss_pred hhHHHHHHHhh
Q 028320 194 DDLLIAERILN 204 (210)
Q Consensus 194 ~Dl~~a~~~~~ 204 (210)
+||..++..+.
T Consensus 268 ~dl~~a~~~~~ 278 (297)
T 2ux8_A 268 AGFIQANLAVA 278 (297)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999996544
No 40
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=99.64 E-value=1.7e-15 Score=120.46 Aligned_cols=193 Identities=16% Similarity=0.106 Sum_probs=116.5
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d 78 (210)
.||+|++++|+|||+|+++++.+++ +++|+|++++.. +.+...++.++..+..... ..+..+++..|+..++ +
T Consensus 46 ~pK~l~~i~gkpli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~iv~~~~~~~~g~~~al~~a~~~~~---~ 120 (254)
T 1jyk_A 46 TPKALVQVNQKPLIEYQIEFLKEKG-INDIIIIVGYLK-EQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELA---N 120 (254)
T ss_dssp SCGGGCEETTEEHHHHHHHHHHHTT-CCCEEEEECTTG-GGGTHHHHHHCCEEEECTTTTTSCTHHHHHTTGGGCT---T
T ss_pred CCCEEeeECCEEHHHHHHHHHHHCC-CCeEEEEeCCcH-HHHHHHHHhCCcEEEECCCccCCCcHHHHHHHHHHCC---C
Confidence 4899999999999999999999886 899999998764 3455555566655433222 1233677887777763 3
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc---eE-EccCCCceeeecCccCeeeecCC-cccChH---HH
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT---IK-EANSESFVVRTLDRKTLWEMQTP-QVIKPD---LL 150 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~---~~-~~~~~g~v~~~~~r~~~~~~~~P-~~f~~~---~l 150 (210)
++++.||+|+.. +.++.+++ .++.++ ....++ .. ..+++|.+..+.++.......+. +.|+.. .|
T Consensus 121 -~lv~~~D~~~~~-~~~~~~~~----~~~~~t-~~~~~~~~~~~v~~d~~g~v~~~~e~~~~~~~~~Giy~~~~~~~~~l 193 (254)
T 1jyk_A 121 -SYVIDADNYLFK-NMFRNDLT----RSTYFS-VYREDCTNEWFLVYGDDYKVQDIIVDSKAGRILSGVSFWDAPTAEKI 193 (254)
T ss_dssp -EEEEETTEEESS-CCCCSCCC----SEEEEE-CEESSCSSCCEEEECTTCBEEEEECCCSSEEBCCSEEEECHHHHHHH
T ss_pred -EEEEeCCcccCH-HHHHHHHh----CCceEE-EEcccCCCCeEEEECCCCeEEEEEECCCCCcEEEEEEEEcHHHHHHH
Confidence 678999999998 66554432 222222 222221 11 23445766655443222122222 345543 33
Q ss_pred HHHHHHHHhcC----CCCCcHHHHHHhCCCCeEEEecC-CCCccccChhhHHHHHHHhhcc
Q 028320 151 KKGFELVNREG----LEVTDDVSIVEHLKHPVYITEGS-YTNIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 151 ~~~~~~~~~~~----~~~~d~~~~~~~~g~~v~~v~~~-~~~~dIdt~~Dl~~a~~~~~~~ 206 (210)
..++.....++ +|+++....+ ..+.++.....+ ..+.+|||++||..++.+++..
T Consensus 194 ~~~l~~~~~~~~~~e~~~~d~~~~l-~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~~~ 253 (254)
T 1jyk_A 194 VSFIDKAYVSGEFVDLYWDNMVKDN-IKELDVYVEELEGNSIYEIDSVQDYRKLEEILKNE 253 (254)
T ss_dssp HHHHHHHHTTTCCTTCCTTHHHHTT-GGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcCCccccCHHHHHHHH-HhhCCeEEEEecCCeEEEcCCHHHHHHHHHHhhhc
Confidence 44444332222 3455432212 345677766554 5789999999999999998764
No 41
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=99.63 E-value=3.9e-16 Score=131.56 Aligned_cols=193 Identities=15% Similarity=0.239 Sum_probs=116.9
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~v 80 (210)
.||+|++++|+|||+|+++++.+++ +++|+|+++++ + .+.+.+....+.++.+... ..+...++..... .+.+
T Consensus 21 ~~K~ll~i~g~pli~~~l~~l~~~~-~~~i~vv~~~~-i---~~~~~~~~~~i~~~~~~~~-~~g~~~~l~~~~~-~~~~ 93 (401)
T 2ggo_A 21 RPKAFVPILSKPLIEYQIEYLRKCG-IRDITVIVSSK-N---KEYFEKKLKEISIVTQKDD-IKGTGAAILSAKF-NDEA 93 (401)
T ss_dssp SCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECGG-G---HHHHHHHCTTCEEEECCTT-CCBSTTTGGGCCC-SSEE
T ss_pred CCcceeeECCEeHHHHHHHHHHHCC-CCEEEEEeCHH-H---HHHhhccCCcEEEEeCCCC-CCChHHHHHHhcc-CCCE
Confidence 4899999999999999999999986 89999999886 3 3444433212344433210 0112233333322 4678
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccce----EEccCCCceeeecC-----ccCeeeecCCcccChHHHH
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLD-----RKTLWEMQTPQVIKPDLLK 151 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~g~v~~~~~-----r~~~~~~~~P~~f~~~~l~ 151 (210)
+++.||+||.+++.++++++ ..+.++++.++.++. ...+++|.+..+.+ ++.++.. .-+.|+.+.|.
T Consensus 94 lv~~~D~~~~~~~~~~~l~~---~~~~~i~~~~~~~~~~~~~v~~~~~g~v~~~~ek~~~~~~~~~~~-Giy~~~~~~~~ 169 (401)
T 2ggo_A 94 LIIYGDLFFSNEKEICNIIT---LKENAIIGVKVSNPKDYGVLVLDNQNNLSKIIEKPEIPPSNLINA-GIYKLNSDIFT 169 (401)
T ss_dssp EEEETTEEESCSHHHHHHTT---CSSEEEEEEECSCCSSSCEEEECTTSSEEEEECSCSSCSCSEEEE-EEEEEETHHHH
T ss_pred EEEeCccccccHHHHHHHHH---hcCCEEEEEEcCCCcceeEEEECCCCeEEEEEECCCCCCCcEEEE-EEEEEcHHHHH
Confidence 89999999999999999987 334455566654431 11233465554332 2222220 01234444432
Q ss_pred HHHHHHH---hcCCCCCcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcc
Q 028320 152 KGFELVN---REGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 152 ~~~~~~~---~~~~~~~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~ 206 (210)
.+.... ...+++++....+ ..|.++..+..+..++|||||+||..++.++..+
T Consensus 170 -~l~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~ 225 (401)
T 2ggo_A 170 -YLDKISISERGELELTDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDN 225 (401)
T ss_dssp -HHHHSCCCSSSCBCHHHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHH
T ss_pred -HhhhcCcCCCCceEHHHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHh
Confidence 233221 1123344433334 4466787777766889999999999999987654
No 42
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=99.62 E-value=2.5e-15 Score=115.36 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=71.5
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-CCccHHHHHHHHHHcccCCCCE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDFNSEL 79 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-~~~~~~~si~~~l~~~~~~~d~ 79 (210)
.||+|++++|+|||+|+++++.++ +++|+|+++++.. +... ++.+.... .+.+..+++..|++.++ .+.
T Consensus 30 ~~K~ll~i~g~pll~~~l~~l~~~--~~~i~vv~~~~~~----~~~~--~~~~v~~~~~~~g~~~~i~~al~~~~--~~~ 99 (201)
T 2e8b_A 30 EDKLLYEIKGKKVIERVYETAKSV--FKEVYIVAKDREK----FSFL--NAPVVLDEFEESASIIGLYTALKHAK--EEN 99 (201)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTT--CSEEEEEESCSGG----GGGG--TCCEEECCCSSCCHHHHHHHHHHHCS--SSE
T ss_pred CCcccceECceEHHHHHHHHHHHh--CCEEEEEeCcHHH----hhcC--CceEEecCCCCCCcHHHHHHHHHHcC--CCC
Confidence 389999999999999999999876 7999999998753 1111 44433222 24567899999999885 578
Q ss_pred EEEEeCCCCCCCHHHHHH-HH
Q 028320 80 VCIHDSARPLVLSKDVQK-VL 99 (210)
Q Consensus 80 vl~~~~d~Pli~~~~i~~-~i 99 (210)
++++.||+||++++.+++ ++
T Consensus 100 ~lv~~~D~P~i~~~~i~~~l~ 120 (201)
T 2e8b_A 100 VFVLSGDLPLMKKETVLYVLE 120 (201)
T ss_dssp EEEEETTCTTCCHHHHHHHHH
T ss_pred EEEEeCCcCcCCHHHHHHHHh
Confidence 999999999999999999 87
No 43
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=99.61 E-value=2.9e-15 Score=121.76 Aligned_cols=195 Identities=15% Similarity=0.141 Sum_probs=120.6
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-------------------------cCCcEEE
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-------------------------INVDLKF 55 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-------------------------~~~~v~~ 55 (210)
+||+|+|++|+|||+|+++++.+++ +++|+|++++.. +.+.+.+.. ++..+.+
T Consensus 29 ~pK~ll~i~gkpli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~i~~ 106 (302)
T 2e3d_A 29 IPKEMLPLVDKPLIQYVVNECIAAG-ITEIVLVTHSSK-NSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQ 106 (302)
T ss_dssp SCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECGGG-HHHHHHHSCCHHHHHHHC----CHHHHHHHHTSCTTCEEEE
T ss_pred CCceeeEECCeEHHHHHHHHHHHCC-CCEEEEEeCCCH-HHHHHHHhcchhhhhhhhhccchhhhhhhhhccccCcceEE
Confidence 4999999999999999999999886 899999999864 445554432 2444555
Q ss_pred ecC--CccHHHHHHHHHHcccCCCCEEEEEeCCCCCCC----HH---HHHHHHHHHHhcCCe-EEeeecccc--eE--Ec
Q 028320 56 SLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVL----SK---DVQKVLMDALRVGAA-VLGVPAKAT--IK--EA 121 (210)
Q Consensus 56 ~~~--~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~----~~---~i~~~i~~~~~~~~~-~~~~~~~~~--~~--~~ 121 (210)
+.. ..+..+++..|+..+. .+.++++.||+|+ + +. +++++++.+...+++ +.+.++.++ .. ..
T Consensus 107 ~~~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~~~yg~v~~ 183 (302)
T 2e3d_A 107 VRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVIL-DEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVDC 183 (302)
T ss_dssp EECSSCCCHHHHHHHTHHHHC--SSCEEEECTTEEE-CTTSSCTTTSTHHHHHHHHHHHCCEEEEEEECSCGGGSEEEEC
T ss_pred eeCCccCCHHHHHHHHHHHcC--CCcEEEEcCCccc-cCccccchHHHHHHHHHHHHhcCCcEEEEEEccCCCCccEEEe
Confidence 432 3345788999988875 3678999999998 5 56 899999988765553 333344321 11 11
Q ss_pred c----CCC---ceeeecCcc-----Ceeeec-CCcccChHHHHHHHHHHHh---cCCCCCcHHHHHHhCCCCeEEEecCC
Q 028320 122 N----SES---FVVRTLDRK-----TLWEMQ-TPQVIKPDLLKKGFELVNR---EGLEVTDDVSIVEHLKHPVYITEGSY 185 (210)
Q Consensus 122 ~----~~g---~v~~~~~r~-----~~~~~~-~P~~f~~~~l~~~~~~~~~---~~~~~~d~~~~~~~~g~~v~~v~~~~ 185 (210)
+ ++| .+..+.+.. .-+... .-++|+...+ ..+..... ..+++++....+...| ++..+..+.
T Consensus 184 ~~~~~~~g~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l-~~l~~~~~~~~~~~~l~d~i~~l~~~~-~v~~~~~~~ 261 (302)
T 2e3d_A 184 KGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEKE-TVEAYHMKG 261 (302)
T ss_dssp TTCCCCTTCEEEECEEEESCCTTTCSCSEEEEEEEEECTTHH-HHHTCCCC----CCCHHHHHHHHHHHS-CEEEEECCS
T ss_pred cccccCCCCceeEEEEEECCCCCccccceEEEEEEEECHHHH-HHHHhhCCCCCCceehHHHHHHHHHhC-CEEEEEeCC
Confidence 1 244 444332210 000111 1144555543 33322110 1234444433333345 787777666
Q ss_pred CCccccChhhHHHHHHH
Q 028320 186 TNIKVTTPDDLLIAERI 202 (210)
Q Consensus 186 ~~~dIdt~~Dl~~a~~~ 202 (210)
.+.||+||+||..++..
T Consensus 262 ~~~DIgt~~d~~~a~~~ 278 (302)
T 2e3d_A 262 KSHDCGNKLGYMQAFVE 278 (302)
T ss_dssp CEEECSSHHHHHHHHHH
T ss_pred eEEcCCCHHHHHHHHHH
Confidence 89999999999999843
No 44
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=99.60 E-value=4e-14 Score=115.47 Aligned_cols=201 Identities=14% Similarity=0.148 Sum_probs=112.6
Q ss_pred CCccceec-CCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cCC-cEEEec--CCccHHHHHHHHHHcccC
Q 028320 1 MPKQYLPL-LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV-DLKFSL--PGKERQDSVYSGLQEVDF 75 (210)
Q Consensus 1 ~~K~l~~i-~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~~-~v~~~~--~~~~~~~si~~~l~~~~~ 75 (210)
.||+|+++ +|+|||+|+++++.++ +++|+|++++...+.+.+.+.+ ++. .+.++. ...+...++..++..+.
T Consensus 26 ~pK~ll~i~gg~pli~~~l~~l~~~--~~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~gt~~al~~a~~~l~- 102 (308)
T 2qh5_A 26 YPKQFLKLFDHKSLFELSFKRNASL--VDETLIVCNEKHYFLALEEIKNEIKNKSVGFLLESLSKNTANAIALSALMSD- 102 (308)
T ss_dssp CCGGGCTTBTTBCHHHHHHHHHHTT--CSEEEEEEEGGGHHHHHHHTTTTCSSCEEEEEEESSCCCHHHHHHHHHHTSC-
T ss_pred CCCEEEECCCCCCHHHHHHHHHHcc--CCCEEEEEChhHHHHHHHHHHHhhCCCccEEEeCCCCCChHHHHHHHHHHhC-
Confidence 49999999 6999999999999887 8999999998643456676666 665 444432 23345788888888874
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHH---HHhcCC--eEEeeecccc--e--EEccCCCceeeecCccC-----------
Q 028320 76 NSELVCIHDSARPLVLSKDVQKVLMD---ALRVGA--AVLGVPAKAT--I--KEANSESFVVRTLDRKT----------- 135 (210)
Q Consensus 76 ~~d~vl~~~~d~Pli~~~~i~~~i~~---~~~~~~--~~~~~~~~~~--~--~~~~~~g~v~~~~~r~~----------- 135 (210)
..+.++++.||+|+++.+.++++++. +...++ .+.+.+...+ . ...+++|.+..+.+...
T Consensus 103 ~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~~~~g 182 (308)
T 2qh5_A 103 KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIESPNGLDVKRFIEKPSLDKAIEFQKSG 182 (308)
T ss_dssp TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTSEEEECSSSSBCSEEEESCCHHHHHHHHHHC
T ss_pred CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEECCCCEEEEEEECCChHHHHHHhhcC
Confidence 24578999999999999999999986 334444 2333343221 1 12233455554432110
Q ss_pred eeeecC-CcccChHHHHHHHHHHH--------h------cC----CCCC---cHH-H---------HHHhCCCCeEEEec
Q 028320 136 LWEMQT-PQVIKPDLLKKGFELVN--------R------EG----LEVT---DDV-S---------IVEHLKHPVYITEG 183 (210)
Q Consensus 136 ~~~~~~-P~~f~~~~l~~~~~~~~--------~------~~----~~~~---d~~-~---------~~~~~g~~v~~v~~ 183 (210)
-+...+ -++|+.+.|...+.... . .. ++++ .+. . .+...|.++..++.
T Consensus 183 ~~~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~ 262 (308)
T 2qh5_A 183 GFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVEL 262 (308)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEEC
T ss_pred CeEEEeEEEEEEHHHHHHHHHHhChHHHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEEC
Confidence 112222 24566655433332211 0 00 2222 111 1 01234678888877
Q ss_pred CCCCccccChhhHHHHHHHhh
Q 028320 184 SYTNIKVTTPDDLLIAERILN 204 (210)
Q Consensus 184 ~~~~~dIdt~~Dl~~a~~~~~ 204 (210)
+..+.||+|++||..++....
T Consensus 263 ~~~w~digt~~~l~~~~~~~~ 283 (308)
T 2qh5_A 263 NAKWSDLGNFNALFEEAANEP 283 (308)
T ss_dssp CSCCBC---------------
T ss_pred CCceeCCCCHHHHHHHhhcCc
Confidence 778999999999999887544
No 45
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=99.58 E-value=3.8e-14 Score=112.43 Aligned_cols=195 Identities=11% Similarity=0.065 Sum_probs=119.4
Q ss_pred CCccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC---CcEEE---------------------e
Q 028320 1 MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN---VDLKF---------------------S 56 (210)
Q Consensus 1 ~~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~---~~v~~---------------------~ 56 (210)
+||+|+|++|+|||+|+++++.+++ +++|+|+++++. +.+.+.+.+++ ..+.+ +
T Consensus 23 ~pK~l~~i~gkpli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 100 (259)
T 1tzf_A 23 KPKPMVEIGGKPILWHIMKMYSVHG-IKDFIICCGYKG-YVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLV 100 (259)
T ss_dssp CCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECTTH-HHHHHHHHTHHHHHSCEEEEGGGTEEEETTCCCCCCEEEEE
T ss_pred CCccccEECCEEHHHHHHHHHHHCC-CCEEEEEcccCH-HHHHHHHhhcccccccccccccccceeeeeccccccceeee
Confidence 4999999999999999999999986 899999998875 55666665431 11211 1
Q ss_pred c--CCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEeeecccc--e--EEccCCCceeee
Q 028320 57 L--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKAT--I--KEANSESFVVRT 130 (210)
Q Consensus 57 ~--~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~~~~~~~~--~--~~~~~~g~v~~~ 130 (210)
. ...+..+++..|+..+.. .+.++++.||. + ....++++++.+...++.+++.++..+ . ...+ +|.+..+
T Consensus 101 ~~~~~~gt~~al~~a~~~~~~-~~~~lv~~~D~-~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~g~v~~~-~g~v~~~ 176 (259)
T 1tzf_A 101 DTGDSSMTGGRLKRVAEYVKD-DEAFLFTYGDG-V-ADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQ-AGQVRSF 176 (259)
T ss_dssp ECCSSCCHHHHHHHTGGGTTT-SSCEEEEETTE-E-ECCCHHHHHHHHHHHCCSEEEEEECCCCCSEEEEEE-TTEEEEE
T ss_pred ecccccCcHHHHHHHHHhcCC-CCcEEEEECCE-e-cccCHHHHHHHHHHhCCeEEEEEecCCCCccEEEEc-CCEEEEE
Confidence 1 123457788888888742 46778889998 3 457899999888765553333333221 1 1123 5666544
Q ss_pred cCc--cCeeeec-CCcccChHHHHHHHHHHHhcCCCC-CcHHHHHHhCCCCeEEEecCCCCccccChhhHHHHHHHhhcc
Q 028320 131 LDR--KTLWEMQ-TPQVIKPDLLKKGFELVNREGLEV-TDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLIAERILNLS 206 (210)
Q Consensus 131 ~~r--~~~~~~~-~P~~f~~~~l~~~~~~~~~~~~~~-~d~~~~~~~~g~~v~~v~~~~~~~dIdt~~Dl~~a~~~~~~~ 206 (210)
.++ ...+... .-++|+...|. .+. .....+ ++....+...| ++..+..+..+.||||++||..++..+...
T Consensus 177 ~ekp~~~~~~~~~Giy~~~~~~l~-~l~---~~~~~~~~~~i~~~~~~~-~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~ 251 (259)
T 1tzf_A 177 QEKPKGDGAMINGGFFVLNPSVID-LID---NDATTWEQEPLMTLAQQG-ELMAFEHPGFWQPMDTLRDKVYLEGLWEKG 251 (259)
T ss_dssp EESCSCCSCCEECCCEEECGGGGG-GCC---STTCCTTTHHHHHHHHTT-CEEEEEECSCEEECCSHHHHHHHHHHHHTT
T ss_pred EecCCCCCceEEEEEEEeCHHHHH-hhc---ccccccHHHHHHHHHHcC-CEEEEEeCcEEEeCCCHHHHHHHHHHHhcC
Confidence 321 1111121 22455554431 111 111122 33322222334 666555556899999999999999988754
No 46
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=99.53 E-value=1.1e-13 Score=117.40 Aligned_cols=200 Identities=12% Similarity=0.086 Sum_probs=121.7
Q ss_pred CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cCC-------cEEEecC------C---ccH
Q 028320 1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INV-------DLKFSLP------G---KER 62 (210)
Q Consensus 1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~~-------~v~~~~~------~---~~~ 62 (210)
+||+|+|++|+ |||+|+++++.+++ +++|+|++++.. +.+.+.+.+ ++. .+.++.. . .+.
T Consensus 33 ~pK~llpi~gk~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt 110 (420)
T 3brk_X 33 RAKPAVYFGGKARIIDFALSNALNSG-IRRIGVATQYKA-HSLIRHLQRGWDFFRPERNESFDILPASQRVSETQWYEGT 110 (420)
T ss_dssp SCGGGSEETTTEETHHHHHHHHHHTT-CCEEEEEECTTC-HHHHHHHHHHSCCCCGGGTCEEEEECCC-------CCCCH
T ss_pred CcccccccCCCCcHHHHHHHHHHhCC-CCeEEEEeCCCh-HHHHHHHhhhhccccccccCCEEEeCccccccCCccccCC
Confidence 48999999999 99999999999986 899999999875 456665554 442 1333321 1 355
Q ss_pred HHHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeec--ccc----eEEccCCCceeeecCc
Q 028320 63 QDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPA--KAT----IKEANSESFVVRTLDR 133 (210)
Q Consensus 63 ~~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~--~~~----~~~~~~~g~v~~~~~r 133 (210)
.+++..|+..+.. +.+.++++.||+ + ....++++++.+...++ .+.+.++ .++ ....+++|.+..+.++
T Consensus 111 ~~al~~a~~~l~~~~~~~~lv~~~D~-~-~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~g~v~~~~ek 188 (420)
T 3brk_X 111 ADAVYQNIDIIEPYAPEYMVILAGDH-I-YKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIEK 188 (420)
T ss_dssp HHHHHTTHHHHHHHCCSEEEEEESSC-E-ECBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEECTTSBEEEEEES
T ss_pred HHHHHHHHHHHHhcCCCEEEEecccE-E-EchHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEECCCCcEEEeEeC
Confidence 7889988888752 347899999999 4 45678999988876554 3444443 222 1222445666544321
Q ss_pred cC----------eeeecC-CcccChHHHHHHHHHHHh---cCCCC-CcHHHHHHhCCCCeEEEec-----------CCCC
Q 028320 134 KT----------LWEMQT-PQVIKPDLLKKGFELVNR---EGLEV-TDDVSIVEHLKHPVYITEG-----------SYTN 187 (210)
Q Consensus 134 ~~----------~~~~~~-P~~f~~~~l~~~~~~~~~---~~~~~-~d~~~~~~~~g~~v~~v~~-----------~~~~ 187 (210)
.. .+...+ -+.|+.+.|...+..... ...++ ++-...+...| ++..... +..+
T Consensus 189 p~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~li~~g-~v~~~~~~~~~~~~~~~~~~~~ 267 (420)
T 3brk_X 189 PADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHG-KAVAHRFADSCVRSDFEHEPYW 267 (420)
T ss_dssp CSSCCCBTTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC----------CTTHHHHHS-CEEEEEHHHHBCCCTTCSSCCE
T ss_pred CCccccccccccceEEeeeeEEEeHHHHHHHHHHhcccCCccccchHHHHHHHhhhC-cEEEEEeccccccccccCCCEE
Confidence 10 111111 245666665544432110 01112 23222222334 6665444 5578
Q ss_pred ccccChhhHHHHHHHhhc
Q 028320 188 IKVTTPDDLLIAERILNL 205 (210)
Q Consensus 188 ~dIdt~~Dl~~a~~~~~~ 205 (210)
.||||++||..++..+..
T Consensus 268 ~dI~t~~d~~~a~~~ll~ 285 (420)
T 3brk_X 268 RDVGTIDAYWQANIDLTD 285 (420)
T ss_dssp ECCCSHHHHHHHHHHTTS
T ss_pred EECCCHHHHHHHHHHHhC
Confidence 999999999999987754
No 47
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=99.52 E-value=1.9e-14 Score=112.53 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=69.5
Q ss_pred CccceecCCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHH-HhhcCCcEEEecC-C--ccHHHHHHHHHHcccCCC
Q 028320 2 PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET-KEKINVDLKFSLP-G--KERQDSVYSGLQEVDFNS 77 (210)
Q Consensus 2 ~K~l~~i~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~-~~~~~~~v~~~~~-~--~~~~~si~~~l~~~~~~~ 77 (210)
||+|++++|+|||+|+++++.++ +++|+|++ ++. +.+.+. .++++..+.++.. + .+..+++..|++.++
T Consensus 36 ~K~l~~i~g~pli~~~l~~l~~~--~~~i~vv~-~~~-~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~i~~a~~~~~--- 108 (232)
T 2xme_A 36 PKPLVRVGGCEIILRTMKLLSPH--VSEFIIVA-SRY-ADDIDAFLKDKGFNYKIVRHDRPEKGNGYSLLVAKNHVE--- 108 (232)
T ss_dssp CGGGCEETTEEHHHHHHHHHGGG--EEEEEEEE-STT-HHHHHHHHTTSCCCEEEEECSCGGGCHHHHHHTTGGGCC---
T ss_pred CcEEeEECCEEHHHHHHHHHHHh--CCEEEEEe-CCh-HHHHHHHHHhcCCcEEEEECCCCCCCcHHHHHHHHHHCC---
Confidence 89999999999999999999877 79999999 554 233333 4555555666543 2 345888999988875
Q ss_pred CEEEEEeCCCCCCCHHHHHHHHH
Q 028320 78 ELVCIHDSARPLVLSKDVQKVLM 100 (210)
Q Consensus 78 d~vl~~~~d~Pli~~~~i~~~i~ 100 (210)
+.++++.||+|+ +++.++++++
T Consensus 109 ~~~lv~~~D~p~-~~~~~~~l~~ 130 (232)
T 2xme_A 109 DRFILTMGDHVY-SQQFIEKAVR 130 (232)
T ss_dssp SSEEEEETTEEE-CHHHHHHHTT
T ss_pred CCEEEEcCCccc-CHHHHHHHHh
Confidence 346678899998 9999988876
No 48
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=99.44 E-value=5.6e-12 Score=107.74 Aligned_cols=203 Identities=11% Similarity=0.016 Sum_probs=126.5
Q ss_pred CCccceecCCe-ehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cC--C-------cEEEec--C-------Cc
Q 028320 1 MPKQYLPLLGQ-PIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-IN--V-------DLKFSL--P-------GK 60 (210)
Q Consensus 1 ~~K~l~~i~gk-pli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~--~-------~v~~~~--~-------~~ 60 (210)
.||+|+|++|+ |||+|+++++.+++ +++|+|++++.. +.+.+.+.+ ++ . .+.++. + ..
T Consensus 41 ~pK~llpi~g~~pli~~~l~~l~~~g-~~~i~vv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 118 (451)
T 1yp2_A 41 RAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQ 118 (451)
T ss_dssp SCGGGCEETTTEETTHHHHHHHHHTT-CCEEEEEESCCC-HHHHHHHHHHCC--------CCEEEEEESCSSTTSCCCCC
T ss_pred CcceeeEECCcceeHHHHHHHHHHCC-CCEEEEEeccCH-HHHHHHHhhhhhcccccccccCcEEEeccccccccccccc
Confidence 48999999999 99999999999885 899999999875 345444432 31 1 122321 1 13
Q ss_pred cHHHHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeecc--cc----eEEccCCCceeeec
Q 028320 61 ERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAK--AT----IKEANSESFVVRTL 131 (210)
Q Consensus 61 ~~~~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~--~~----~~~~~~~g~v~~~~ 131 (210)
+..++++.++..+.. ..+.++++.||+ +. ...++++++.+...++ .+.+.++. ++ +...+++|.+..+.
T Consensus 119 Gt~~al~~a~~~~~~~~~~~~lv~~~D~-~~-~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~~~ 196 (451)
T 1yp2_A 119 GTADAVRQYLWLFEEHTVLEYLILAGDH-LY-RMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFA 196 (451)
T ss_dssp SHHHHHHHTHHHHTTSCCSEEEEECSCE-EC-CCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTSBEEEEE
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEecCcE-EE-cCCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEEECCCCCEEEEE
Confidence 457889999888753 247899999999 54 4578999988876554 23334442 11 22234456665443
Q ss_pred CccC------------------------eeeecC-CcccChHHHHHHHHHHHhcCCCCC-cHHHHHHhCCCCeEEEecCC
Q 028320 132 DRKT------------------------LWEMQT-PQVIKPDLLKKGFELVNREGLEVT-DDVSIVEHLKHPVYITEGSY 185 (210)
Q Consensus 132 ~r~~------------------------~~~~~~-P~~f~~~~l~~~~~~~~~~~~~~~-d~~~~~~~~g~~v~~v~~~~ 185 (210)
++.. .+...+ -+.|+...|...+.........+. +-...+...|.++.....+.
T Consensus 197 ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l~~~i~~g~~v~~~~~~~ 276 (451)
T 1yp2_A 197 EKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDG 276 (451)
T ss_dssp ESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHHHHHHHTTCCEEEEECCS
T ss_pred ECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcccccchHhhHHHHHHhcCCceEEEEeCC
Confidence 2110 111111 245676666555543211111222 32222334567888777666
Q ss_pred CCccccChhhHHHHHHHhhccc
Q 028320 186 TNIKVTTPDDLLIAERILNLSS 207 (210)
Q Consensus 186 ~~~dIdt~~Dl~~a~~~~~~~~ 207 (210)
.+.+|+|++||..++..+..+.
T Consensus 277 ~w~digt~~~l~~a~~~l~~~~ 298 (451)
T 1yp2_A 277 YWEDIGTIEAFYNANLGITKKP 298 (451)
T ss_dssp CCEECSSHHHHHHHHHGGGCSS
T ss_pred EEEECCCHHHHHHHHHHHhccc
Confidence 8999999999999998876543
No 49
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=99.43 E-value=2.3e-12 Score=106.28 Aligned_cols=100 Identities=18% Similarity=0.304 Sum_probs=73.5
Q ss_pred CCccceecCC-eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcC-CcEEEecCCccHHHHHHHHHHcccCCCC
Q 028320 1 MPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN-VDLKFSLPGKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 1 ~~K~l~~i~g-kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~-~~v~~~~~~~~~~~si~~~l~~~~~~~d 78 (210)
.||+|++++| +|||+|+++++..+..+++|+|+|+++....+.+.+...+ ..+..-+.+.+...++..|...+. ..+
T Consensus 23 ~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~~~~ii~e~~~~gta~ai~~a~~~~~-~~~ 101 (336)
T 2x65_A 23 TPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPDENIIAEPMKKNTAPACFIGTKLAD-DDE 101 (336)
T ss_dssp CBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSCGGGEEEESSCCCHHHHHHHHHTTSC-TTC
T ss_pred CCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhccccceEEeCCCCCCcHHHHHHHHHhhC-CCC
Confidence 4999999999 9999999999998755899999999874344555554432 133222333445777877776653 347
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHH
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMD 101 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~ 101 (210)
.++++.||+|+.+++.+..+++.
T Consensus 102 ~~lvl~~D~~~~~~~~~~~~l~~ 124 (336)
T 2x65_A 102 PVLVLPADHRIPDTKKFWKTVKK 124 (336)
T ss_dssp EEEEEETTCBCCCHHHHHHHHHH
T ss_pred EEEEEcCCceeccHHHHHHHHHH
Confidence 89999999999999887777665
No 50
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=99.30 E-value=6e-12 Score=103.85 Aligned_cols=196 Identities=13% Similarity=0.120 Sum_probs=113.1
Q ss_pred CCccceecCC-eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-CCccHHHHHHHHHHcccC--C
Q 028320 1 MPKQYLPLLG-QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-PGKERQDSVYSGLQEVDF--N 76 (210)
Q Consensus 1 ~~K~l~~i~g-kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-~~~~~~~si~~~l~~~~~--~ 76 (210)
.||+|++++| +|||+|+++++..+..+++|+|+|+++....+.+.+.. ..+ +.. .+.+...++..+.. +.. .
T Consensus 24 ~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~--~~~-i~e~~~~gta~ai~~a~~-l~~~~~ 99 (337)
T 2cu2_A 24 RPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG--IRL-LLEPLGRDTAGAVLLGVA-EALKEG 99 (337)
T ss_dssp BCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS--SEE-EEESSCCHHHHHHHHHHH-HHHHHT
T ss_pred CCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc--Cce-EecCCCCCcHHHHHHHHH-HhccCC
Confidence 3999999999 99999999999988458999999988643333332221 122 222 23344666766665 421 2
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeE--Eeeecccc----eEEccCC----CceeeecCc----------
Q 028320 77 SELVCIHDSARPLVLSKDVQKVLMDALR---VGAAV--LGVPAKAT----IKEANSE----SFVVRTLDR---------- 133 (210)
Q Consensus 77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~---~~~~~--~~~~~~~~----~~~~~~~----g~v~~~~~r---------- 133 (210)
.+.++++.||+|+.+++.+..+++.+.+ .++.+ .+.|.... ....+++ +.+.++.+.
T Consensus 100 ~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~vt~~i~p~~~~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~~ 179 (337)
T 2cu2_A 100 AERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYI 179 (337)
T ss_dssp CSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHH
T ss_pred CCEEEEEECCccCCCHHHHHHHHHHHHHHHHcCCeEEEeeccCCCCCCceEEEECCcccccCeEEEEEeCCChHHHHHHh
Confidence 5789999999999999998888776522 24422 22333211 1111222 345444321
Q ss_pred -cCeeeecC-CcccChHHHHHHHHHHHhc----------CCCCCcHHH---------HHHhCCCCeEEEecCCCCccccC
Q 028320 134 -KTLWEMQT-PQVIKPDLLKKGFELVNRE----------GLEVTDDVS---------IVEHLKHPVYITEGSYTNIKVTT 192 (210)
Q Consensus 134 -~~~~~~~~-P~~f~~~~l~~~~~~~~~~----------~~~~~d~~~---------~~~~~g~~v~~v~~~~~~~dIdt 192 (210)
++ +..++ -++|+.+.|...++..... +..+.+... .+.+.+.++.+++.+..+.||+|
T Consensus 180 ~~g-~~~n~Giy~f~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt 258 (337)
T 2cu2_A 180 RKG-YVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGN 258 (337)
T ss_dssp HTT-CEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCS
T ss_pred hcC-CEEEEEEEEEeHHHHHHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCC
Confidence 11 22222 2566766654433322100 000000011 01223567888888888999999
Q ss_pred hhhHHHHHH
Q 028320 193 PDDLLIAER 201 (210)
Q Consensus 193 ~~Dl~~a~~ 201 (210)
+++|..+..
T Consensus 259 ~~~l~~~~~ 267 (337)
T 2cu2_A 259 WRALERVFS 267 (337)
T ss_dssp TTHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999988754
No 51
>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21
Probab=99.26 E-value=1.1e-10 Score=89.95 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=62.6
Q ss_pred cCCeehHHHHHHHHhcCCCCCeE-EEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCC
Q 028320 8 LLGQPIALYSFYTFSRMVEVKEI-VVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSA 86 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~~~i-vVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d 86 (210)
..|+|||+|+++++.+++ ++.+ +|+++++... +. ++.. ++.+..+..+++..|++.+ .+.++++.||
T Consensus 30 ~l~~~ll~~vl~~l~~~~-~~~v~vvv~~~~~~~---~~---~~~~--~v~~~~gl~~sl~~a~~~~---~~~vlvi~~D 97 (211)
T 2i5e_A 30 EFVELMLNQVISSLKGAG-IEQVDILSPSVYGLE---EM---TEAR--VLLDEKDLNEALNRYLKEA---EEPVLIVMAD 97 (211)
T ss_dssp HHHHHHHHHHHHHHHHTT-CSEEEEEESSCTTCS---SC---CSSE--EEECCSCHHHHHHHHHHHC---CSCEEEECSC
T ss_pred HHHHHHHHHHHHHHHHcC-CceEEEEEcCcHHHH---hh---cCCE--EEECCCCHHHHHHHHHHhc---CCCEEEEcCC
Confidence 567999999999999885 7899 9988876421 11 3433 3333345578889898876 4679999999
Q ss_pred CCCCCHHHHHHHHH
Q 028320 87 RPLVLSKDVQKVLM 100 (210)
Q Consensus 87 ~Pli~~~~i~~~i~ 100 (210)
+|++++++|+++++
T Consensus 98 ~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 98 LPLLSPEHIKEISS 111 (211)
T ss_dssp CTTCCHHHHHHHTT
T ss_pred cCCCCHHHHHHHHc
Confidence 99999999999987
No 52
>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}
Probab=98.99 E-value=1.1e-08 Score=80.36 Aligned_cols=92 Identities=14% Similarity=0.047 Sum_probs=66.7
Q ss_pred eehHHHHHHHHhcCCCCCeEEEEeCCCChHHH--HHHHhhcCCcEEEe-cCCccHHHHHHHHHHcc-cCCCCEEEEEeCC
Q 028320 11 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIF--EETKEKINVDLKFS-LPGKERQDSVYSGLQEV-DFNSELVCIHDSA 86 (210)
Q Consensus 11 kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i--~~~~~~~~~~v~~~-~~~~~~~~si~~~l~~~-~~~~d~vl~~~~d 86 (210)
++|+.++++++.+++ .+.++|++++.....+ ..+. +..+.+. ..+.+..+++.+|+..+ ....+.|+++.+|
T Consensus 37 ~~ll~~tl~~~~~~~-~~~vvvvt~~~~~~~~~~~~~~---~~~~~~~~q~~~gLg~rl~~a~~~~~~~~~~~vliigaD 112 (242)
T 3cgx_A 37 RHFVQDMLQGLARLH-ADLHICYVPGDADLPEKFKAWL---GPQHMFAAQQGLDLGERMKHAMQKAFDDGYDRVVLMGSD 112 (242)
T ss_dssp HHHHHHHHHHHTTSS-SEEEEEECCCCTTHHHHHHHHH---CTTSEEEECCSSSHHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred HHHHHHHHHHHHhCC-CCEEEEEcCCchhhhhhhhhhc---cCCcEEecCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 589999999999885 6777777776553322 3333 2223333 34456788899999876 3346789999999
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 028320 87 RPLVLSKDVQKVLMDALRVG 106 (210)
Q Consensus 87 ~Pli~~~~i~~~i~~~~~~~ 106 (210)
+|++++++|+++++.+...+
T Consensus 113 ~P~L~~~~l~~a~~~l~~~d 132 (242)
T 3cgx_A 113 IPDYPCELVQKALNDLQHYD 132 (242)
T ss_dssp CTTCCHHHHHHHHHHTTTCS
T ss_pred CCCCCHHHHHHHHHHhccCC
Confidence 99999999999998776544
No 53
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00086 Score=57.62 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=70.3
Q ss_pred CCccceecC-CeehHHHHHHHHhcCC---CCC-eEEEEeCCCChHHHHHHHhhc---CCcEEEe----------------
Q 028320 1 MPKQYLPLL-GQPIALYSFYTFSRMV---EVK-EIVVVCDPSYSDIFEETKEKI---NVDLKFS---------------- 56 (210)
Q Consensus 1 ~~K~l~~i~-gkpli~~~i~~~~~~~---~~~-~ivVv~~~~~~~~i~~~~~~~---~~~v~~~---------------- 56 (210)
.||.++++. |||||+|+++++.+.. .+. .++|+++....+.+++.++++ |..+.++
T Consensus 110 ~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~fg~~i~~f~Q~~~P~i~~d~~~~l 189 (488)
T 2i5k_A 110 GPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPRVYKDSLLPV 189 (488)
T ss_dssp SBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCSSSCEEEEECCCCEECEETTTCCBS
T ss_pred CCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccccCceEEEEEeCccceEccccceee
Confidence 489999998 9999999999987662 122 467777744446777777664 3344433
Q ss_pred ------------cCCccHHHHHHHH---HHccc-CCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEeeeccc
Q 028320 57 ------------LPGKERQDSVYSG---LQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGA--AVLGVPAKA 116 (210)
Q Consensus 57 ------------~~~~~~~~si~~~---l~~~~-~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~--~~~~~~~~~ 116 (210)
+.|+...-....+ ++.+. ...++++++.+|. |+...++. ++..+...++ ++.+++..+
T Consensus 190 ~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~-~L~~~~~~~a~~t~~v~~~~~ 265 (488)
T 2i5k_A 190 PTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLK-ILNHMIETGAEYIMELTDKTR 265 (488)
T ss_dssp CSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHH-HHHHHHHSCCSEEEEEEECCG
T ss_pred ccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHH-HHHHHHhcCCcEEEEEEEecC
Confidence 2233222221122 45542 2357999999999 98877775 4455545544 444555543
No 54
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=96.66 E-value=0.02 Score=48.85 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=39.1
Q ss_pred CCccceecC-CeehHHHHHHHHhcCC---CCC-eEEEEeCCCChHHHHHHHhh---cCCcEEE
Q 028320 1 MPKQYLPLL-GQPIALYSFYTFSRMV---EVK-EIVVVCDPSYSDIFEETKEK---INVDLKF 55 (210)
Q Consensus 1 ~~K~l~~i~-gkpli~~~i~~~~~~~---~~~-~ivVv~~~~~~~~i~~~~~~---~~~~v~~ 55 (210)
.||+++|+. |+|+|+|.++++.+.+ .+. .+++.+.....+.+.+..++ +|..+.+
T Consensus 97 ~PK~llpv~~gkp~Le~~i~~l~~~~~~~G~~ip~vimts~~t~e~t~~~f~~~~~fG~~I~~ 159 (469)
T 2icy_A 97 GPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHT 159 (469)
T ss_dssp SBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGTTSSSCEEE
T ss_pred CCccccccCCCCCHHHHHHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHhcccCCceEEE
Confidence 499999998 9999999999988752 122 45566666544667777765 4555653
No 55
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=95.75 E-value=0.056 Score=46.56 Aligned_cols=47 Identities=9% Similarity=-0.031 Sum_probs=32.5
Q ss_pred CCccceec---CCeehHHHHHHHHhc----C----C---CCCeEEEEeCCCChHHHHHHHhh
Q 028320 1 MPKQYLPL---LGQPIALYSFYTFSR----M----V---EVKEIVVVCDPSYSDIFEETKEK 48 (210)
Q Consensus 1 ~~K~l~~i---~gkpli~~~i~~~~~----~----~---~~~~ivVv~~~~~~~~i~~~~~~ 48 (210)
.||.++|+ .|+|+|+|.++++.+ + + .+..+++ +.....+.+.+..++
T Consensus 120 ~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vIm-tS~~t~e~t~~~f~~ 180 (505)
T 1jv1_A 120 YPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIM-TSGRTMESTKEFFTK 180 (505)
T ss_dssp SCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEE-ECTTTHHHHHHHHHH
T ss_pred CCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEE-ecCCCHHHHHHHHHh
Confidence 49999999 899999999999765 1 2 2444444 444433566676654
No 56
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=94.89 E-value=0.29 Score=37.31 Aligned_cols=94 Identities=7% Similarity=0.051 Sum_probs=65.0
Q ss_pred cCCeehHHHHHHHHhcCCCCC-eEEEEeCCCChHHHHHHHhhc--CCcEEEecCC----------ccHHHHHHHHHHccc
Q 028320 8 LLGQPIALYSFYTFSRMVEVK-EIVVVCDPSYSDIFEETKEKI--NVDLKFSLPG----------KERQDSVYSGLQEVD 74 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~~-~ivVv~~~~~~~~i~~~~~~~--~~~v~~~~~~----------~~~~~si~~~l~~~~ 74 (210)
.++...|..+++++.+...-+ +|+||-+... +...++++.+ ...+.++... .+...+.-.|++...
T Consensus 10 yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~-d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a~ 88 (255)
T 1qg8_A 10 YNKSDYVAKSISSILSQTFSDFELFIMDDNSN-EETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAE 88 (255)
T ss_dssp SSCTTTHHHHHHHHHTCSCCCEEEEEEECSCC-HHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhccCCceEEEEEECCCC-chHHHHHHHHhhcCCEEEEecccccccccccccCHHHHHHHHHHHcC
Confidence 466788999999987654323 5666655443 5556666665 3455555432 334556667888764
Q ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320 75 FNSELVCIHDSARPLVLSKDVQKVLMDALRV 105 (210)
Q Consensus 75 ~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~ 105 (210)
.++++++++|.-+ .++.++.+++.+...
T Consensus 89 --g~~i~~lD~Dd~~-~~~~l~~~~~~~~~~ 116 (255)
T 1qg8_A 89 --GEYITYATDDNIY-MPDRLLKMVRELDTH 116 (255)
T ss_dssp --CSEEEEEETTEEE-CTTHHHHHHHHHHHC
T ss_pred --CCEEEEeCCCCcc-ChHHHHHHHHHHHhC
Confidence 7999999999764 889999999988765
No 57
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=94.68 E-value=0.39 Score=36.11 Aligned_cols=96 Identities=17% Similarity=0.078 Sum_probs=61.7
Q ss_pred cCCeehHHHHHHHHhcCCCCC-eEEEEeCCCC--h-HHHHHHHhhcCCcEEEecC-CccHHHHHHHHHHcccCCCCEEEE
Q 028320 8 LLGQPIALYSFYTFSRMVEVK-EIVVVCDPSY--S-DIFEETKEKINVDLKFSLP-GKERQDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~~-~ivVv~~~~~--~-~~i~~~~~~~~~~v~~~~~-~~~~~~si~~~l~~~~~~~d~vl~ 82 (210)
.++...|..+++++.+...-+ +|+||-+... . +.+++..+++. .+.++.. ..+...+.-.|++... .++|++
T Consensus 14 yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~-~i~~i~~~n~G~~~a~N~g~~~a~--g~~i~~ 90 (240)
T 3bcv_A 14 YNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYP-NIKVIHKKNAGLGMACNSGLDVAT--GEYVAF 90 (240)
T ss_dssp SSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCS-SEEEEECCCCCHHHHHHHHHHHCC--SSEEEE
T ss_pred CCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCC-CEEEEECCCCChHHHHHHHHHHcC--CCEEEE
Confidence 367789999999987643222 5666654322 1 12333333332 3444433 2334666677888875 799999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 83 HDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
+++|. .+.++.++.+++.+...+.
T Consensus 91 lD~Dd-~~~~~~l~~l~~~~~~~~~ 114 (240)
T 3bcv_A 91 CDSDD-YVDSDMYMTMYNVAQKYTC 114 (240)
T ss_dssp CCTTC-CCCTTHHHHHHHHHHHHTC
T ss_pred ECCCC-cCCHHHHHHHHHHHHhcCC
Confidence 99997 5699999999998876443
No 58
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=94.55 E-value=0.32 Score=39.09 Aligned_cols=94 Identities=16% Similarity=0.039 Sum_probs=65.6
Q ss_pred cCCeehHHHHHHHHhcCC--CCCeEEEEeCCCChHHHHHHHhhcCCcEEE-------ecCCccHHHHHHHHHHcccCCCC
Q 028320 8 LLGQPIALYSFYTFSRMV--EVKEIVVVCDPSYSDIFEETKEKINVDLKF-------SLPGKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~--~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~-------~~~~~~~~~si~~~l~~~~~~~d 78 (210)
.|+...|..+++++.+.. ...+|+||-+... +...++++.++..+.. .....+...+...|++... .+
T Consensus 57 yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~-D~t~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~--gd 133 (329)
T 3ckj_A 57 LDEEDTIGSVIDSISPLVDGLVDELIVLDSGST-DDTEIRAVAAGARVVSREQALPEVPIRPGKGEALWRSLAASR--GD 133 (329)
T ss_dssp SSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCC-SSHHHHHHHTTCEEEEHHHHCTTSCCCCSHHHHHHHHHHHCC--CS
T ss_pred CCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCC-chHHHHHHHhhhhhccceeeeccCCCCCCHHHHHHHHHHhCC--CC
Confidence 467788999999987643 2357777754432 3456677777654321 1222334677778888765 79
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~ 104 (210)
+|+++++|.-.+.++.+..+++.+..
T Consensus 134 ~i~~lD~D~~~~~p~~l~~l~~~l~~ 159 (329)
T 3ckj_A 134 IVVFVDSDLINPHPMFVPWLVGPLLT 159 (329)
T ss_dssp EEEECCTTEESCCTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCcChHHHHHHHHHHHh
Confidence 99999999987899999999988654
No 59
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=94.40 E-value=0.076 Score=45.69 Aligned_cols=47 Identities=9% Similarity=0.031 Sum_probs=34.2
Q ss_pred CCccceecC-CeehHHHHHHHHhcCCCC----CeEEEEeCCCChHHHHHHHh
Q 028320 1 MPKQYLPLL-GQPIALYSFYTFSRMVEV----KEIVVVCDPSYSDIFEETKE 47 (210)
Q Consensus 1 ~~K~l~~i~-gkpli~~~i~~~~~~~~~----~~ivVv~~~~~~~~i~~~~~ 47 (210)
.||+++|++ |||+|++.++++.+.+.- =.+++.|....-+.+.+..+
T Consensus 93 ~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~ 144 (505)
T 2oeg_A 93 DAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLK 144 (505)
T ss_dssp SCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHH
T ss_pred CCCcccccCCCCcHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHh
Confidence 499999999 999999999999876311 15666666553355666665
No 60
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=93.69 E-value=0.79 Score=38.22 Aligned_cols=110 Identities=11% Similarity=0.114 Sum_probs=65.9
Q ss_pred CCccceec---CCeehHHHHHHHHhc------------CCCCCeEEEEeCCCChHHHHHHHhhc---CCc---EE-----
Q 028320 1 MPKQYLPL---LGQPIALYSFYTFSR------------MVEVKEIVVVCDPSYSDIFEETKEKI---NVD---LK----- 54 (210)
Q Consensus 1 ~~K~l~~i---~gkpli~~~i~~~~~------------~~~~~~ivVv~~~~~~~~i~~~~~~~---~~~---v~----- 54 (210)
.||.+.++ .|||++++.++++++ ...+. .+|.|+....+.+.+..+++ |.. +.
T Consensus 53 ~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip-~~IMtS~~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~ 131 (405)
T 3oc9_A 53 HPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIH-WFLMTNEETIEEINNYFKEHQYFGLSSEQIHCFPQG 131 (405)
T ss_dssp SBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCE-EEEEECTTTHHHHHHHHHHTGGGGSCTTSEEEEECC
T ss_pred CCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCC-EEEEeCCccHHHHHHHHHhCcccCCCccceEEEeeC
Confidence 48999999 999999999998854 11234 55555655446777877653 331 22
Q ss_pred --------------------EecCCccHHHHHHHHH------Hccc-CCCCEEEEEeCCCCCC---CHHHHHHHHHHHHh
Q 028320 55 --------------------FSLPGKERQDSVYSGL------QEVD-FNSELVCIHDSARPLV---LSKDVQKVLMDALR 104 (210)
Q Consensus 55 --------------------~~~~~~~~~~si~~~l------~~~~-~~~d~vl~~~~d~Pli---~~~~i~~~i~~~~~ 104 (210)
+.+.|... +..+| +.+. ...+++++...|.+|. ++..+..+++ +.
T Consensus 132 ~~P~i~~dg~i~l~~~~~i~~~P~GhGg---i~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~~~Dp~~lg~~~~--~~ 206 (405)
T 3oc9_A 132 MLPVVDFNGKILYEKKDKPYMAPNGHGG---LFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNMIGYMDL--LQ 206 (405)
T ss_dssp EEECBCTTSCBCEEETTEECEEECCGGG---HHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCCSSCHHHHHHHHH--TT
T ss_pred ceeEEecCCCeecCCCCccccccCCChH---HHHHHHHCCcHHHHHhcCCEEEEEEeCCCcccccCCHHHHHHHHH--cC
Confidence 23334332 33333 3232 1347999999999988 5666555543 12
Q ss_pred cCCeEEeeeccc
Q 028320 105 VGAAVLGVPAKA 116 (210)
Q Consensus 105 ~~~~~~~~~~~~ 116 (210)
.+.++-+++..+
T Consensus 207 ~d~~~kvv~k~~ 218 (405)
T 3oc9_A 207 SEICIKIVKKGF 218 (405)
T ss_dssp CSEEEEEEECCS
T ss_pred CCEEEEEEECCC
Confidence 334455555443
No 61
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=93.48 E-value=0.6 Score=38.67 Aligned_cols=95 Identities=15% Similarity=0.011 Sum_probs=66.2
Q ss_pred cCCeehHHHHHHHHhc----CCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEe-------cCCccHHHHHHHHHHcccCC
Q 028320 8 LLGQPIALYSFYTFSR----MVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-------LPGKERQDSVYSGLQEVDFN 76 (210)
Q Consensus 8 i~gkpli~~~i~~~~~----~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~-------~~~~~~~~si~~~l~~~~~~ 76 (210)
.|....|..+++++.+ .+...+|+||-+... +...++++.++..+... .+..+...++..|++...
T Consensus 103 yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgSt-D~T~~i~~~~~~~v~~~~~~~i~~~~n~G~g~A~n~G~~~A~-- 179 (387)
T 3f1y_A 103 RNVADTVGGIIDEIHALNERAPLIDQILVVDADSE-DGTAGVAASHGAEVYSENELMSGYGDAHGKGDAMWRALSVTR-- 179 (387)
T ss_dssp SSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCS-SSHHHHHHHTTCEEEEGGGTTGGGCSCCSHHHHHHHHTTTCC--
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCC-ccHHHHHHHhCchhcccceeEecCCccCCHHHHHHHHHHhcC--
Confidence 3666778888888754 232357777755433 44567777776554221 122344677888888764
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320 77 SELVCIHDSARPLVLSKDVQKVLMDALRV 105 (210)
Q Consensus 77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~~ 105 (210)
.|+|+++++|.=..+++.+..+++.+...
T Consensus 180 gd~i~~lDaD~~~~~p~~L~~l~~~l~~~ 208 (387)
T 3f1y_A 180 GDLVLYIDADTRDFRPQLAYGVLGPVLEV 208 (387)
T ss_dssp SSEEEECCTTCSSCCTHHHHTTHHHHHHS
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHHC
Confidence 79999999999878999999999988654
No 62
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=91.98 E-value=0.73 Score=38.83 Aligned_cols=96 Identities=14% Similarity=0.039 Sum_probs=64.4
Q ss_pred CCe-ehHHHHHHHHhcCCCCC---eEEEEeCCCC---h-HHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320 9 LGQ-PIALYSFYTFSRMVEVK---EIVVVCDPSY---S-DIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 9 ~gk-pli~~~i~~~~~~~~~~---~ivVv~~~~~---~-~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d 78 (210)
++. ..|..+++++.+...-. +|+||-+... . +.+++++++++..+.++.. ..+...+.-.|++... .+
T Consensus 39 N~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~--gd 116 (472)
T 1xhb_A 39 NEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSR--GQ 116 (472)
T ss_dssp SCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCC--SS
T ss_pred CCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCChHHHHHHHHHhcc--CC
Confidence 555 68999999987654323 7777754332 1 2344444444434565543 2344666777888865 79
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
+++++++|.= ++++.++.+++.+.....
T Consensus 117 ~i~flD~D~~-~~p~~L~~ll~~~~~~~~ 144 (472)
T 1xhb_A 117 VITFLDAHCE-CTAGWLEPLLARIKHDRR 144 (472)
T ss_dssp EEEEEESSEE-ECTTCHHHHHHHHHHCTT
T ss_pred eEEEECCCeE-eCccHHHHHHHHHHhCCC
Confidence 9999999975 789999999998876554
No 63
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=91.53 E-value=1.3 Score=40.29 Aligned_cols=94 Identities=10% Similarity=0.095 Sum_probs=61.6
Q ss_pred CCee-hHHHHHHHHhcCCCCC---eEEEEeCCCC------------------hHHHHHHHhhcCCcEEEecCC-ccHHHH
Q 028320 9 LGQP-IALYSFYTFSRMVEVK---EIVVVCDPSY------------------SDIFEETKEKINVDLKFSLPG-KERQDS 65 (210)
Q Consensus 9 ~gkp-li~~~i~~~~~~~~~~---~ivVv~~~~~------------------~~~i~~~~~~~~~~v~~~~~~-~~~~~s 65 (210)
|+.+ ++..+++++.+...-+ +|+|+.+... ...+++.+++++..+...... .....+
T Consensus 150 Ne~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~~i~~~~~~~GKa~a 229 (802)
T 4hg6_A 150 NEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVVYSTRERNEHAKAGN 229 (802)
T ss_dssp TCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCEEEECSSCCSHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcEEEEecCCCCcchHH
Confidence 4443 5699999997765433 5777655421 112344555666544332222 234666
Q ss_pred HHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 028320 66 VYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV 105 (210)
Q Consensus 66 i~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~ 105 (210)
+..|++... .|+|+++|+|. .+.++.+++++..+.+.
T Consensus 230 lN~gl~~a~--gd~Il~lDaD~-~~~pd~L~~lv~~~~~d 266 (802)
T 4hg6_A 230 MSAALERLK--GELVVVFDADH-VPSRDFLARTVGYFVED 266 (802)
T ss_dssp HHHHHHHCC--CSEEEECCTTE-EECTTHHHHHHHHHHHS
T ss_pred HHHHHHhcC--CCEEEEECCCC-CcChHHHHHHHHHHhcC
Confidence 778888875 79999999999 56899999999998654
No 64
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=89.93 E-value=1.3 Score=37.67 Aligned_cols=96 Identities=14% Similarity=0.034 Sum_probs=62.6
Q ss_pred CCee-hHHHHHHHHhcCCCCC---eEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCCEEEE
Q 028320 9 LGQP-IALYSFYTFSRMVEVK---EIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 9 ~gkp-li~~~i~~~~~~~~~~---~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d~vl~ 82 (210)
++.. .|..+++++.+...-. +|+||-+......+...++.+. .+.++.. ..+...+...|++... .|+|++
T Consensus 76 N~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~-~v~vi~~~~n~G~~~A~N~G~~~A~--gd~i~f 152 (501)
T 2ffu_A 76 NEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIE-KVRVLRNDRREGLMRSRVRGADAAQ--AKVLTF 152 (501)
T ss_dssp SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBT-TEEEEECSSCCHHHHHHHHHHHHCC--SSEEEE
T ss_pred cCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCC-CEEEEECCCCcCHHHHHHHHHHhcC--CCEEEE
Confidence 4444 7899999876543322 7777754332123344444443 4555542 2334666777888875 799999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCCe
Q 028320 83 HDSARPLVLSKDVQKVLMDALRVGAA 108 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~~i~~~~~~~~~ 108 (210)
+++|.- ++++.+..+++.+......
T Consensus 153 lD~D~~-~~p~~L~~ll~~~~~~~~~ 177 (501)
T 2ffu_A 153 LDSHCE-CNEHWLEPLLERVAEDRTR 177 (501)
T ss_dssp CCSSEE-ECTTCHHHHHHHHHHCTTE
T ss_pred ECCCcc-cCccHHHHHHHHHHhCCCe
Confidence 999985 5899999999988776543
No 65
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=88.01 E-value=1.5 Score=38.89 Aligned_cols=98 Identities=7% Similarity=-0.013 Sum_probs=63.7
Q ss_pred cCCeehHHHHHHHHhcCC----CCCeEEEEeCCCC----hHHHHHHHhhcCCcEEEecCC-ccHHHHHHHHHHcccC--C
Q 028320 8 LLGQPIALYSFYTFSRMV----EVKEIVVVCDPSY----SDIFEETKEKINVDLKFSLPG-KERQDSVYSGLQEVDF--N 76 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~----~~~~ivVv~~~~~----~~~i~~~~~~~~~~v~~~~~~-~~~~~si~~~l~~~~~--~ 76 (210)
.|+...|..+++++.+.. ...+|+||=+... ...+.+.++..+..+.++... .+...+.-.|++.+.. +
T Consensus 189 YN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~N~G~a~a~N~Gl~~A~g~~~ 268 (657)
T 4fix_A 189 FNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQPNLGGSGGYSRVMYEALKNTD 268 (657)
T ss_dssp SSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 578889999999987643 2346777644331 123445554444456666543 2224444556666532 4
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHhcC
Q 028320 77 SELVCIHDSARPLVLSKDVQKVLMDALRVG 106 (210)
Q Consensus 77 ~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~ 106 (210)
+|+|++++.|. .+.++.++.+++.+....
T Consensus 269 ~dyIlfLD~D~-~~~pd~L~~ll~~l~~~~ 297 (657)
T 4fix_A 269 CQQILFMDDDI-RLEPDSILRVLAMHRFAK 297 (657)
T ss_dssp CSEEEEECSSE-EECTHHHHHHHHHHHHBS
T ss_pred CCEEEEECCCC-ccChhHHHHHHHHHHhCC
Confidence 79999999998 568999999999887653
No 66
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=87.83 E-value=5.1 Score=33.24 Aligned_cols=93 Identities=13% Similarity=-0.012 Sum_probs=56.2
Q ss_pred ecCCeehHHHHHHHHh---cCCCCCeEEEEeCCCChHHHHHHHh--------hcCCcEEE-e-c--C--CccHHHHHHHH
Q 028320 7 PLLGQPIALYSFYTFS---RMVEVKEIVVVCDPSYSDIFEETKE--------KINVDLKF-S-L--P--GKERQDSVYSG 69 (210)
Q Consensus 7 ~i~gkpli~~~i~~~~---~~~~~~~ivVv~~~~~~~~i~~~~~--------~~~~~v~~-~-~--~--~~~~~~si~~~ 69 (210)
|.++.. |..+++.+. ..+. -+|+||=| ...|.+.++++ ..++.+.. . . + ..+.+.++..|
T Consensus 7 P~~eE~-I~~vl~~l~~~~~~~~-~EIIVVDD-GStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G 83 (397)
T 2bo4_A 7 PFKHEH-PEVLLHNVRVAAAHPR-VHEVLCIG-YERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTA 83 (397)
T ss_dssp ECCSSC-HHHHHHHHHHHHHSTT-CCEEEEEE-SSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHH
T ss_pred eCCccC-HHHHHHHHHHhccCCC-eEEEEEEC-cCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHH
Confidence 334433 455665543 2222 35655533 22234455555 44555533 2 2 2 24558889999
Q ss_pred H----HcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 028320 70 L----QEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 70 l----~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~ 104 (210)
+ ... ..|+|+++|||.=-.+|+.+.++++...+
T Consensus 84 ~~~Al~~a--~gd~vv~mDADlq~~~P~~i~~Ll~~l~~ 120 (397)
T 2bo4_A 84 LRYFLEET--QWERIHFYDADITSFGPDWITKAEEAADF 120 (397)
T ss_dssp HHHHHHHC--CCSEEEECCTTCSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHhC--CCCEEEEEcCCCCCCCHHHHHHHHHHHHc
Confidence 9 554 37999999999755789999999988754
No 67
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=86.97 E-value=1.7 Score=37.83 Aligned_cols=95 Identities=14% Similarity=0.021 Sum_probs=62.2
Q ss_pred CCe-ehHHHHHHHHhcCCCCC---eEEEEeCCCC----hHHHHHHHhhcCCcEEEecC--CccHHHHHHHHHHcccCCCC
Q 028320 9 LGQ-PIALYSFYTFSRMVEVK---EIVVVCDPSY----SDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSE 78 (210)
Q Consensus 9 ~gk-pli~~~i~~~~~~~~~~---~ivVv~~~~~----~~~i~~~~~~~~~~v~~~~~--~~~~~~si~~~l~~~~~~~d 78 (210)
+.. ..|..+++++.+...-. +|+||-+... .+.++++++++. .+.++.. ..+...+.-.|++... .|
T Consensus 122 Ne~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~-~v~vi~~~~n~G~~~A~N~G~~~A~--gd 198 (570)
T 2d7i_A 122 NEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFP-SVRILRTKKREGLIRTRMLGASVAT--GD 198 (570)
T ss_dssp SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTST-TEEEEECSSCCCHHHHHHHHHHHCC--SS
T ss_pred CCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCC-eEEEEECCCCCCHHHHHHHHHHhcC--CC
Confidence 444 58889999886643323 6777754332 122344444442 4555543 2344667777888865 79
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 79 LVCIHDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 79 ~vl~~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
+++++++|.=+ +++.++.+++.+.....
T Consensus 199 ~i~fLD~D~~~-~p~~L~~ll~~l~~~~~ 226 (570)
T 2d7i_A 199 VITFLDSHCEA-NVNWLPPLLDRIARNRK 226 (570)
T ss_dssp EEEECCSSEEE-CTTCSHHHHHHHHHCTT
T ss_pred EEEEEcCCccc-cccHHHHHHHHHHhCCC
Confidence 99999999866 89999999998876543
No 68
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=86.78 E-value=3.5 Score=35.95 Aligned_cols=96 Identities=17% Similarity=0.083 Sum_probs=63.7
Q ss_pred cCCeehHHHHHHHHhcCCC--CCeEEEEeCCCChHHHHHHHhhcC--CcEEEec--C-CccHHHHHHHHHHcccCCCCEE
Q 028320 8 LLGQPIALYSFYTFSRMVE--VKEIVVVCDPSYSDIFEETKEKIN--VDLKFSL--P-GKERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~--~~~ivVv~~~~~~~~i~~~~~~~~--~~v~~~~--~-~~~~~~si~~~l~~~~~~~d~v 80 (210)
.+....|..+++++.+... --+|+||-+... +...+.++.+. ..+.++. + +.+...+.-.|++... .++|
T Consensus 102 ~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~-d~t~~~~~~~~~~~~i~~i~~~~~~~g~~~a~N~g~~~a~--g~~v 178 (625)
T 2z86_A 102 YNRAKILAITLACLCNQKTIYDYEVIVADDGSK-ENIEEIVREFESLLNIKYVRQKDYGYQLCAVRNLGLRAAK--YNYV 178 (625)
T ss_dssp SSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCS-SCHHHHHHTTTTTSCEEEEEECCCSCCHHHHHHHHHHHCC--SSEE
T ss_pred CCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCc-hhHHHHHHHhhhcCCeEEEEeCCCCcchhHHHHHHHHhCC--cCEE
Confidence 3666789999999876531 245666654332 33456666553 2344332 2 2224566677888764 7999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCC
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~~~~ 107 (210)
+++++|.=+ +++.+..++..+...+.
T Consensus 179 ~~lD~D~~~-~~~~l~~~~~~~~~~~~ 204 (625)
T 2z86_A 179 AILDCDMAP-NPLWVQSYMELLAVDDN 204 (625)
T ss_dssp EEECTTEEE-CTTHHHHHHHHHHHCTT
T ss_pred EEECCCCCC-CHHHHHHHHHHHhcCCc
Confidence 999999876 89999999998876554
No 69
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=85.22 E-value=0.92 Score=38.82 Aligned_cols=47 Identities=6% Similarity=0.003 Sum_probs=33.7
Q ss_pred CCccceecC---CeehHHHHHHHHhcC--------C-----CCCeEEEEeCCCChHHHHHHHhh
Q 028320 1 MPKQYLPLL---GQPIALYSFYTFSRM--------V-----EVKEIVVVCDPSYSDIFEETKEK 48 (210)
Q Consensus 1 ~~K~l~~i~---gkpli~~~i~~~~~~--------~-----~~~~ivVv~~~~~~~~i~~~~~~ 48 (210)
.||.+++++ |||+|++.++++.+. + .+..++. |.....+.+.+.+++
T Consensus 121 ~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~Im-tS~~t~~~t~~~~~~ 183 (486)
T 2yqc_A 121 APKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIM-TSGPTRNATESFFIE 183 (486)
T ss_dssp SBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEE-ECGGGHHHHHHHHHH
T ss_pred CCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEE-ECCCCHHHHHHHHhh
Confidence 489999999 999999999998865 2 1344444 444433567777764
No 70
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=83.60 E-value=4.8 Score=35.03 Aligned_cols=94 Identities=11% Similarity=-0.019 Sum_probs=60.3
Q ss_pred cCCeehHHHHHHHHhcCCCCC-eEEEEeCCCChHHHHHHHhhc---CCcEEEec-CCccHHHHHHHHHHcccCCCCEEEE
Q 028320 8 LLGQPIALYSFYTFSRMVEVK-EIVVVCDPSYSDIFEETKEKI---NVDLKFSL-PGKERQDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~~-~ivVv~~~~~~~~i~~~~~~~---~~~v~~~~-~~~~~~~si~~~l~~~~~~~d~vl~ 82 (210)
.++...|..+++++......+ +|+||-+... +...++++++ ...+.++. ...+...+.-.|++... .|++++
T Consensus 384 yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~-d~t~~~~~~~~~~~~~i~~~~~~n~G~~~a~n~g~~~a~--g~~i~~ 460 (625)
T 2z86_A 384 YNCSKYIVRCVESALNQTITDLEVCICDDGST-DDTLRILQEHYANHPRVRFISQKNKGIGSASNTAVRLCR--GFYIGQ 460 (625)
T ss_dssp SSCTTTHHHHHHHHHSSSCCSEEEEEEEESCS-SSHHHHHHHHHTTCTTEEEEEECCCCHHHHHHHHHHHCC--SSEEEE
T ss_pred CCCHHHHHHHHHHHHhCcCCCeEEEEEECcCC-hhHHHHHHHHHhhCCcEEEEeCCCCCHHHHHHHHHHhcC--CCEEEE
Confidence 477789999999987644333 5666543322 2233334332 12344432 22334666777888765 799999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc
Q 028320 83 HDSARPLVLSKDVQKVLMDALRV 105 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~~i~~~~~~ 105 (210)
+++|-= +.++.++.+++.+...
T Consensus 461 ld~D~~-~~~~~l~~~~~~~~~~ 482 (625)
T 2z86_A 461 LDSDDF-LEPDAVELCLDEFRKD 482 (625)
T ss_dssp CCTTCE-ECTTHHHHHHHHHHHC
T ss_pred ECCCcc-cChhHHHHHHHHHHhC
Confidence 999974 5999999999888654
No 71
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=74.53 E-value=3.7 Score=32.61 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=60.4
Q ss_pred eehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhc---CCcEEEecCCccHHHHHHHHHHccc-CCCCEEEEEeCC
Q 028320 11 QPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI---NVDLKFSLPGKERQDSVYSGLQEVD-FNSELVCIHDSA 86 (210)
Q Consensus 11 kpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~---~~~v~~~~~~~~~~~si~~~l~~~~-~~~d~vl~~~~d 86 (210)
..++...+....+++.+++|+|+=+......-....... ++++.+..+... ++.+=+.-.+ -..++||.+|-|
T Consensus 40 ~~~L~~lv~~~~~~~~v~~IvVvWn~~~~~pp~~~~~~~~~~~vpv~v~~~~~n---sLnnRF~p~~~i~T~AVLslDDD 116 (293)
T 1omz_A 40 TDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTAN---KMRNRLQVFPEVETNAVLMVDDD 116 (293)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSC---CGGGGGSCCTTCCSSEEEEECTT
T ss_pred cHHHHHHHHHHhcCCCCCeEEEEeCCCCCCCChhhccccCCCCccEEEEeCCCC---chhhccCCCccCCcCEEEEEcCC
Confidence 467788888888898899999998775311111222233 366766655332 2211111111 147899999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 028320 87 RPLVLSKDVQKVLMDALRVGA 107 (210)
Q Consensus 87 ~Pli~~~~i~~~i~~~~~~~~ 107 (210)
. .++.+.|+..++..++...
T Consensus 117 v-~l~~~el~faF~vWr~~Pd 136 (293)
T 1omz_A 117 T-LISAQDLVFAFSIWQQFPD 136 (293)
T ss_dssp E-EECHHHHHHHHHHHTTSTT
T ss_pred C-CCCHHHHHHHHHHHHHCcc
Confidence 8 8999999999998877643
No 72
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=64.19 E-value=27 Score=24.74 Aligned_cols=65 Identities=3% Similarity=0.063 Sum_probs=41.6
Q ss_pred HHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCC-CCEEEEEeCCCC
Q 028320 17 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN-SELVCIHDSARP 88 (210)
Q Consensus 17 ~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~-~d~vl~~~~d~P 88 (210)
+++.+++.+ -++.|+|+... ..+...++.++.. +..+..+....+...++.+.-+ .+.+++ ||.+
T Consensus 47 ~l~~L~~~g--~~~~i~T~~~~-~~~~~~~~~lgi~--~~~~~~~k~~~l~~~~~~~~~~~~~~~~v--GD~~ 112 (176)
T 3mmz_A 47 GIAALRKSG--LTMLILSTEQN-PVVAARARKLKIP--VLHGIDRKDLALKQWCEEQGIAPERVLYV--GNDV 112 (176)
T ss_dssp HHHHHHHTT--CEEEEEESSCC-HHHHHHHHHHTCC--EEESCSCHHHHHHHHHHHHTCCGGGEEEE--ECSG
T ss_pred HHHHHHHCC--CeEEEEECcCh-HHHHHHHHHcCCe--eEeCCCChHHHHHHHHHHcCCCHHHEEEE--cCCH
Confidence 577777765 37888887775 5677788888877 4445566667777777766422 234444 4543
No 73
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=62.47 E-value=15 Score=26.16 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhh-cCCcEEEe
Q 028320 16 YSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK-INVDLKFS 56 (210)
Q Consensus 16 ~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~-~~~~v~~~ 56 (210)
=+++++..++.+|.+++++++.+.....+.++. +|..|..+
T Consensus 98 laiD~~~~a~~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~ 139 (165)
T 2qip_A 98 ITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQRYNKKVTVY 139 (165)
T ss_dssp HHHHHHHHGGGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHhhccCCEEEEEECChhHHHHHHHHHHHcCcEEEEE
Confidence 355655445678999999998876555566666 68776544
No 74
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=59.23 E-value=35 Score=27.59 Aligned_cols=97 Identities=6% Similarity=-0.087 Sum_probs=60.5
Q ss_pred ceecCCeehHHHHHHHHhcCCC-C--CeEEEEeCCCChHHHHHHHhhcCCcEEEec--C-C------cc--------HHH
Q 028320 5 YLPLLGQPIALYSFYTFSRMVE-V--KEIVVVCDPSYSDIFEETKEKINVDLKFSL--P-G------KE--------RQD 64 (210)
Q Consensus 5 l~~i~gkpli~~~i~~~~~~~~-~--~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~--~-~------~~--------~~~ 64 (210)
+....++|=+..+++++.+... . ..|+|+-+... +.++++++.++..+.++. + + .. -..
T Consensus 7 iI~~yNRp~l~~~L~sL~~~~p~~~~~~iivsdDgs~-~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y~~ia~ 85 (343)
T 1fo8_A 7 LVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGH-EETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYYKIAR 85 (343)
T ss_dssp EEEESSCTTHHHHHHHHHHHCSCTTTSCEEEEECTTC-HHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHhcCCCcCCcEEEEEECCCC-HHHHHHHHHcCCceEEEEcCCccccccchhhcCcccchhHhH
Confidence 3455677778899999877642 2 35777666554 677888888764444421 1 0 00 024
Q ss_pred HHHHHHHcccC--CCCEEEEEeCCCCCCCHHHHHHHHHHHH
Q 028320 65 SVYSGLQEVDF--NSELVCIHDSARPLVLSKDVQKVLMDAL 103 (210)
Q Consensus 65 si~~~l~~~~~--~~d~vl~~~~d~Pli~~~~i~~~i~~~~ 103 (210)
++..|++.+=. ..+.+++++.|+ .++|+-++.+.+.+.
T Consensus 86 h~~~al~~vf~~~~~~~vIiLEDDl-~~spdF~~y~~~~l~ 125 (343)
T 1fo8_A 86 HYRWALGQIFHNFNYPAAVVVEDDL-EVAPDFFEYFQATYP 125 (343)
T ss_dssp HHHHHHHHHHTTSCCSEEEEEETTE-EECTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCEEEEEcCCC-eECHHHHHHHHHHHH
Confidence 45566655422 478999999997 567877766655543
No 75
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=57.98 E-value=56 Score=24.42 Aligned_cols=86 Identities=12% Similarity=-0.080 Sum_probs=50.1
Q ss_pred CCeehHHHHHHHHhcCCCCCeEE-EEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCC
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIV-VVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSAR 87 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~iv-Vv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~ 87 (210)
++-.-++-.++++.+-..--+|+ |+++.+. ....+.++++|+++.......-....+...|+..+ .|. +++.+=+
T Consensus 17 G~gsnl~all~~~~~~~~~~~I~~Vis~~~~-a~~l~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~--~Dl-ivlagy~ 92 (215)
T 3kcq_A 17 GRGSNLEALAKAFSTEESSVVISCVISNNAE-ARGLLIAQSYGIPTFVVKRKPLDIEHISTVLREHD--VDL-VCLAGFM 92 (215)
T ss_dssp SCCHHHHHHHHHTCCC-CSEEEEEEEESCTT-CTHHHHHHHTTCCEEECCBTTBCHHHHHHHHHHTT--CSE-EEESSCC
T ss_pred CCcHHHHHHHHHHHcCCCCcEEEEEEeCCcc-hHHHHHHHHcCCCEEEeCcccCChHHHHHHHHHhC--CCE-EEEeCCc
Confidence 45566777777775432112444 4454433 23456788899887654321111245666776654 566 4455778
Q ss_pred CCCCHHHHHHH
Q 028320 88 PLVLSKDVQKV 98 (210)
Q Consensus 88 Pli~~~~i~~~ 98 (210)
-+++++.++..
T Consensus 93 ~IL~~~~l~~~ 103 (215)
T 3kcq_A 93 SILPEKFVTDW 103 (215)
T ss_dssp SCCCHHHHHHT
T ss_pred eEeCHHHHhhc
Confidence 88998888654
No 76
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=57.50 E-value=80 Score=26.04 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcc-cCCCCEEEEEeCCCCCCCHHHHHHHHHHHH
Q 028320 62 RQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDAL 103 (210)
Q Consensus 62 ~~~si~~~l~~~-~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~ 103 (210)
...++..|+... ....|+|+++|||. ..|..+..+.+.+.
T Consensus 145 KG~Am~aGl~~A~~~~gd~Vv~~DaDl--~iP~~v~~~~kgy~ 185 (394)
T 2zu9_A 145 KGEGMLVGLLLAKAIGAEYVGFVDADN--YIPGAVNEYVKDYA 185 (394)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCSCB--SCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhCCCCEEEEEeCCC--CCHHHHHHHHHHhh
Confidence 367788888776 11378999999999 56887877777654
No 77
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=57.26 E-value=2.2 Score=38.15 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=0.0
Q ss_pred cCCeehHHHHHHHHhcCCCC-CeEEEEeCCCChHHHHHHHhhc----CCcEEEecCC--ccHHHHHHHHHHcccCCCCEE
Q 028320 8 LLGQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKI----NVDLKFSLPG--KERQDSVYSGLQEVDFNSELV 80 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~-~~ivVv~~~~~~~~i~~~~~~~----~~~v~~~~~~--~~~~~si~~~l~~~~~~~d~v 80 (210)
.++...|..+++++.+...- -+|+||-+.. .+...++++.+ +..+.++... .+...+.-.|++... .++|
T Consensus 11 yN~~~~L~~~L~Sll~Qt~~~~EIIVVDDgS-tD~t~~il~~~~~~~~~~i~~i~~~~n~G~~~arN~gi~~A~--gdyI 87 (729)
T 3l7i_A 11 YNAEEYITGCLESIKQQRTQDFNLIIVNDGS-TDQSKKLMDEAIKDYDKNIRFIDLDENSGHAHARNIALEEVE--TPYF 87 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHhCCCCCeEEEEEECCC-CCcHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHhcc--CCEE
Confidence 35667788888887554321 2455553322 23333444433 3344444322 222444555776654 6899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh
Q 028320 81 CIHDSARPLVLSKDVQKVLMDALR 104 (210)
Q Consensus 81 l~~~~d~Pli~~~~i~~~i~~~~~ 104 (210)
+++++|-=+ .++.++.+++.+.+
T Consensus 88 ~flD~Dd~~-~p~~l~~l~~~l~~ 110 (729)
T 3l7i_A 88 MFLDADDEL-ASYAITFYLEKFNN 110 (729)
T ss_dssp ------------------------
T ss_pred EEECCCCCC-ChhHHHHHHHHhcC
Confidence 999999876 89999999988873
No 78
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=56.24 E-value=60 Score=24.17 Aligned_cols=85 Identities=12% Similarity=-0.012 Sum_probs=50.1
Q ss_pred CCeehHHHHHHHHhcCCC-CCeEEEEeCCCChHHHHHHHhhcCCcEEEecCC--ccH---HHHHHHHHHcccCCCCEEEE
Q 028320 9 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG--KER---QDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~-~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~--~~~---~~si~~~l~~~~~~~d~vl~ 82 (210)
|.-.....+++++.+.+. ++-+.|+|+.+. ....+.++++|+++..+... .++ ...+...|+..+ .|. ++
T Consensus 10 G~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~-~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~--~Dl-iv 85 (216)
T 2ywr_A 10 GRGSNLQAIIDAIESGKVNASIELVISDNPK-AYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKG--VEL-VV 85 (216)
T ss_dssp SCCHHHHHHHHHHHTTSSCEEEEEEEESCTT-CHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTT--CCE-EE
T ss_pred CCcHHHHHHHHHHHhCCCCCeEEEEEeCCCC-hHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcC--CCE-EE
Confidence 445567778888876541 133456666554 45677888899887553321 111 234555666554 455 44
Q ss_pred EeCCCCCCCHHHHHH
Q 028320 83 HDSARPLVLSKDVQK 97 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~ 97 (210)
+.+=+-+++++.++.
T Consensus 86 ~a~y~~il~~~~l~~ 100 (216)
T 2ywr_A 86 LAGFMRILSHNFLKY 100 (216)
T ss_dssp ESSCCSCCCHHHHTT
T ss_pred EeCchhhCCHHHHhh
Confidence 556677788777754
No 79
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=50.10 E-value=75 Score=23.53 Aligned_cols=86 Identities=13% Similarity=0.011 Sum_probs=51.4
Q ss_pred CCeehHHHHHHHHhcCCCCCeE-EEEeCCCChHHHHHHHhhcCCcEEEecC--CccH---HHHHHHHHHcccCCCCEEEE
Q 028320 9 LGQPIALYSFYTFSRMVEVKEI-VVVCDPSYSDIFEETKEKINVDLKFSLP--GKER---QDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~i-vVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~---~~si~~~l~~~~~~~d~vl~ 82 (210)
|+.+.++..++++.+-..--+| .|+|.++. ....+.++++|+++..+.. ..++ -..+...|+..+ .|.+ +
T Consensus 9 G~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~-~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~--~Dli-v 84 (209)
T 1meo_A 9 GTGSNLQALIDSTREPNSSAQIDIVISNKAA-VAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFS--IDIV-C 84 (209)
T ss_dssp SSCTTHHHHHHHHHSTTCSCEEEEEEESSTT-CHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTT--CCEE-E
T ss_pred CCchHHHHHHHHHhcCCCCcEEEEEEeCCCC-hHHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcC--CCEE-E
Confidence 5667788888877654211244 45555554 3456778889988754432 1122 134556666654 5654 4
Q ss_pred EeCCCCCCCHHHHHHH
Q 028320 83 HDSARPLVLSKDVQKV 98 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~~ 98 (210)
+.+=+-+++++.++..
T Consensus 85 ~a~y~~il~~~~l~~~ 100 (209)
T 1meo_A 85 LAGFMRILSGPFVQKW 100 (209)
T ss_dssp EESCCSCCCHHHHHHT
T ss_pred EcchhhhCCHHHHhhh
Confidence 5577788888887653
No 80
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=49.12 E-value=68 Score=22.71 Aligned_cols=67 Identities=7% Similarity=0.039 Sum_probs=39.4
Q ss_pred HHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCC
Q 028320 17 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARP 88 (210)
Q Consensus 17 ~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~P 88 (210)
+++.+++.+ -+++|+|+... ..+...++.++... +..++.+....+..+++.+.-+.+-++++ ||.+
T Consensus 61 ~l~~L~~~g--~~v~ivT~~~~-~~~~~~l~~lgl~~-~~~~~kpk~~~~~~~~~~~g~~~~~~~~i-GD~~ 127 (188)
T 2r8e_A 61 GIRCALTSD--IEVAIITGRKA-KLVEDRCATLGITH-LYQGQSNKLIAFSDLLEKLAIAPENVAYV-GDDL 127 (188)
T ss_dssp HHHHHHTTT--CEEEEECSSCC-HHHHHHHHHHTCCE-EECSCSCSHHHHHHHHHHHTCCGGGEEEE-ESSG
T ss_pred HHHHHHHCC--CeEEEEeCCCh-HHHHHHHHHcCCce-eecCCCCCHHHHHHHHHHcCCCHHHEEEE-CCCH
Confidence 577777665 37788888765 45677777777653 33344444566666666654222233333 5655
No 81
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=44.79 E-value=98 Score=23.29 Aligned_cols=86 Identities=15% Similarity=0.001 Sum_probs=51.7
Q ss_pred CCeehHHHHHHHHhcCCC-CCeEEEEeCCCChHHHHHHHhhcCCcEEEecCC--ccH---HHHHHHHHHcccCCCCEEEE
Q 028320 9 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG--KER---QDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~-~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~--~~~---~~si~~~l~~~~~~~d~vl~ 82 (210)
|.-.....+++++.+... .+-+.|+|+.+. ....+.++++|+++..+... .++ ...+...|+..+ .|+ ++
T Consensus 31 G~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~-~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~--~Dl-iv 106 (229)
T 3auf_A 31 GSGTNLQAILDGCREGRIPGRVAVVISDRAD-AYGLERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYG--VDL-VC 106 (229)
T ss_dssp SCCHHHHHHHHHHHTTSSSEEEEEEEESSTT-CHHHHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTT--CSE-EE
T ss_pred CCcHHHHHHHHHHHhCCCCCeEEEEEcCCCc-hHHHHHHHHcCCCEEEECcccccchhhccHHHHHHHHhcC--CCE-EE
Confidence 555667777888766531 233456666444 45677888899876543321 111 234555666654 565 44
Q ss_pred EeCCCCCCCHHHHHHH
Q 028320 83 HDSARPLVLSKDVQKV 98 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~~ 98 (210)
+.+=+-+++++.++..
T Consensus 107 ~agy~~IL~~~~l~~~ 122 (229)
T 3auf_A 107 LAGYMRLVRGPMLTAF 122 (229)
T ss_dssp ESSCCSCCCHHHHHHS
T ss_pred EcChhHhCCHHHHhhc
Confidence 5577888888888653
No 82
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=44.76 E-value=71 Score=21.73 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=40.1
Q ss_pred HHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCC
Q 028320 17 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARP 88 (210)
Q Consensus 17 ~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~P 88 (210)
+++.+++.+ -+++|+|+... ..+...++.++....+ ...++....+..+++.+.-+.+-++++ ||.+
T Consensus 39 ~l~~l~~~g--~~~~i~T~~~~-~~~~~~~~~~gl~~~~-~~~kpk~~~~~~~~~~~~~~~~~~~~v-GD~~ 105 (164)
T 3e8m_A 39 GIFWAHNKG--IPVGILTGEKT-EIVRRRAEKLKVDYLF-QGVVDKLSAAEELCNELGINLEQVAYI-GDDL 105 (164)
T ss_dssp HHHHHHHTT--CCEEEECSSCC-HHHHHHHHHTTCSEEE-CSCSCHHHHHHHHHHHHTCCGGGEEEE-CCSG
T ss_pred HHHHHHHCC--CEEEEEeCCCh-HHHHHHHHHcCCCEee-cccCChHHHHHHHHHHcCCCHHHEEEE-CCCH
Confidence 477777665 37778887765 5667777777765433 333445566677776664222333433 6665
No 83
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=43.14 E-value=76 Score=21.54 Aligned_cols=69 Identities=6% Similarity=-0.005 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCC
Q 028320 15 LYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARP 88 (210)
Q Consensus 15 ~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~P 88 (210)
..+++.+++.+ -+++|+|+... ..+...++.++... +..++......+..+++.+.-+.+-++++ +|.+
T Consensus 42 ~~~l~~l~~~g--~~~~i~T~~~~-~~~~~~l~~~gl~~-~~~~~kp~~~~~~~~~~~~~~~~~~~~~v-GD~~ 110 (162)
T 2p9j_A 42 GIGIKLLQKMG--ITLAVISGRDS-APLITRLKELGVEE-IYTGSYKKLEIYEKIKEKYSLKDEEIGFI-GDDV 110 (162)
T ss_dssp HHHHHHHHTTT--CEEEEEESCCC-HHHHHHHHHTTCCE-EEECC--CHHHHHHHHHHTTCCGGGEEEE-ECSG
T ss_pred HHHHHHHHHCC--CEEEEEeCCCc-HHHHHHHHHcCCHh-hccCCCCCHHHHHHHHHHcCCCHHHEEEE-CCCH
Confidence 35677777665 37888888775 56677777777653 33344444566666776664222333333 5554
No 84
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=41.21 E-value=1.1e+02 Score=22.72 Aligned_cols=86 Identities=5% Similarity=-0.094 Sum_probs=51.7
Q ss_pred CCeehHHHHHHHHhcCCC-CCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccH---HHHHHHHHHcccCCCCEEEE
Q 028320 9 LGQPIALYSFYTFSRMVE-VKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKER---QDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~-~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~---~~si~~~l~~~~~~~d~vl~ 82 (210)
++-+-++..++++.+... .+-+.|+|..+. ....+.++++|+++..... ..++ ...+...|+..+ .|. ++
T Consensus 9 g~gsnl~ali~~~~~~~~~~~i~~Vis~~~~-~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~--~Dl-iv 84 (212)
T 1jkx_A 9 GNGSNLQAIIDACKTNKIKGTVRAVFSNKAD-AFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYA--PDV-VV 84 (212)
T ss_dssp SCCHHHHHHHHHHHTTSSSSEEEEEEESCTT-CHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGC--CSE-EE
T ss_pred CCcHHHHHHHHHHHcCCCCceEEEEEeCCCc-hHHHHHHHHcCCcEEEeCcccccchhhccHHHHHHHHhcC--CCE-EE
Confidence 444667888888765432 233455566544 4567788889987655431 1122 234556666654 565 44
Q ss_pred EeCCCCCCCHHHHHHH
Q 028320 83 HDSARPLVLSKDVQKV 98 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~~ 98 (210)
+.+=+-+++++.++..
T Consensus 85 ~agy~~il~~~~l~~~ 100 (212)
T 1jkx_A 85 LAGFMRILSPAFVSHY 100 (212)
T ss_dssp ESSCCSCCCHHHHHHT
T ss_pred EeChhhhCCHHHHhhc
Confidence 5577888898888653
No 85
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=40.28 E-value=93 Score=21.74 Aligned_cols=68 Identities=10% Similarity=0.187 Sum_probs=40.2
Q ss_pred HHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCC
Q 028320 16 YSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARP 88 (210)
Q Consensus 16 ~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~P 88 (210)
.+++.+++.+ -+++++|+... ..+...++.++... +..+..+....+...++.+.-+.+-++++ +|.+
T Consensus 42 ~~l~~L~~~G--~~~~i~Tg~~~-~~~~~~~~~lgl~~-~~~~~k~k~~~~~~~~~~~~~~~~~~~~v-GD~~ 109 (180)
T 1k1e_A 42 LGIKMLMDAD--IQVAVLSGRDS-PILRRRIADLGIKL-FFLGKLEKETACFDLMKQAGVTAEQTAYI-GDDS 109 (180)
T ss_dssp HHHHHHHHTT--CEEEEEESCCC-HHHHHHHHHHTCCE-EEESCSCHHHHHHHHHHHHTCCGGGEEEE-ECSG
T ss_pred HHHHHHHHCC--CeEEEEeCCCc-HHHHHHHHHcCCce-eecCCCCcHHHHHHHHHHcCCCHHHEEEE-CCCH
Confidence 5677777665 37888888876 45677777777653 33444555566666666543222223333 5554
No 86
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=39.23 E-value=61 Score=21.60 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=19.6
Q ss_pred ecCCeehHHHHHHHHhcCCCCCeEEEE
Q 028320 7 PLLGQPIALYSFYTFSRMVEVKEIVVV 33 (210)
Q Consensus 7 ~i~gkpli~~~i~~~~~~~~~~~ivVv 33 (210)
..+|+||..++++.+.+.+ +.--.|.
T Consensus 25 ~~~g~pL~~~Iv~~~~~~G-iaGaTV~ 50 (114)
T 1o51_A 25 KHSGKPLFEYLVKRAYELG-MKGVTVY 50 (114)
T ss_dssp EETTEEHHHHHHHHHHHTT-CSCCEEE
T ss_pred ccCCeEHHHHHHHHHHHCC-CCeEEEE
Confidence 4689999999999999886 4444443
No 87
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=37.89 E-value=1.2e+02 Score=22.38 Aligned_cols=85 Identities=12% Similarity=0.008 Sum_probs=50.1
Q ss_pred CCeehHHHHHHHHhcCC-CCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCC--ccH---HHHHHHHHHcccCCCCEEEE
Q 028320 9 LGQPIALYSFYTFSRMV-EVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG--KER---QDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~-~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~--~~~---~~si~~~l~~~~~~~d~vl~ 82 (210)
|+-.....+++++.+.. ..+-+.|+++.+. ..+.+.++++|+++...... .++ ...+...++..+ .|. ++
T Consensus 12 G~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~-~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~--~Dl-iv 87 (212)
T 3av3_A 12 GSGTNFQAIVDAAKRGDLPARVALLVCDRPG-AKVIERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQ--IDW-IA 87 (212)
T ss_dssp SSCHHHHHHHHHHHTTCCCEEEEEEEESSTT-CHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTT--CCE-EE
T ss_pred CCcHHHHHHHHHHHhCCCCCeEEEEEeCCCC-cHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcC--CCE-EE
Confidence 44456667778776653 1233445666444 46778888999887544321 111 234556666654 465 44
Q ss_pred EeCCCCCCCHHHHHH
Q 028320 83 HDSARPLVLSKDVQK 97 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~ 97 (210)
+.+=+-+++++.++.
T Consensus 88 ~a~y~~il~~~~l~~ 102 (212)
T 3av3_A 88 LAGYMRLIGPTLLSA 102 (212)
T ss_dssp ESSCCSCCCHHHHHH
T ss_pred EchhhhhCCHHHHhh
Confidence 557678888887765
No 88
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=37.57 E-value=1.2e+02 Score=22.44 Aligned_cols=86 Identities=10% Similarity=-0.058 Sum_probs=51.2
Q ss_pred CeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccH---HHHHHHHHHcccCCCCEEEEEe
Q 028320 10 GQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKER---QDSVYSGLQEVDFNSELVCIHD 84 (210)
Q Consensus 10 gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~---~~si~~~l~~~~~~~d~vl~~~ 84 (210)
+-+=++-.+++...-..--+|+.|..+.....+.+.++++|+++..... ..++ -..+...|+..+ .|. +++.
T Consensus 12 ~Gsnl~ali~~~~~~~l~~eI~~Visn~~~a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~--~Dl-iv~a 88 (211)
T 3p9x_A 12 SGTNAEAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQ--IDF-VVLA 88 (211)
T ss_dssp TCHHHHHHHHHHHTTCCSSEEEEEEESCSSSHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTT--CCE-EEES
T ss_pred CchHHHHHHHHHHcCCCCcEEEEEEECCCCcHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcC--CCE-EEEe
Confidence 3355677777765433213555554443224677888999988754432 1122 234666676654 566 4455
Q ss_pred CCCCCCCHHHHHHH
Q 028320 85 SARPLVLSKDVQKV 98 (210)
Q Consensus 85 ~d~Pli~~~~i~~~ 98 (210)
+=+-+++++.++..
T Consensus 89 gy~~Il~~~~l~~~ 102 (211)
T 3p9x_A 89 GYMRLVGPTLLGAY 102 (211)
T ss_dssp SCCSCCCHHHHHHH
T ss_pred CchhhcCHHHHhhc
Confidence 77888999888654
No 89
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase, resistance to pyrazinamide, hydrolase; 2.20A {Mycobacterium tuberculosis} PDB: 3pl1_A
Probab=37.33 E-value=79 Score=22.72 Aligned_cols=67 Identities=7% Similarity=-0.091 Sum_probs=39.9
Q ss_pred HHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeE
Q 028320 42 FEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAV 109 (210)
Q Consensus 42 i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~ 109 (210)
+.++++..++.-.++.|-.+-.....+++.+.+...+.+++.+|.... +++.-+..++.+...|..+
T Consensus 116 L~~~L~~~gi~~lvv~G~~t~~CV~~Ta~da~~~G~~v~v~~Da~~~~-~~~~~~~al~~m~~~G~~i 182 (186)
T 3gbc_A 116 LLNWLRQRGVDEVDVVGIATDHCVRQTAEDAVRNGLATRVLVDLTAGV-SADTTVAALEEMRTASVEL 182 (186)
T ss_dssp HHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECS-CHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhcCCCEEEEEEecccHHHHHHHHHHHHCCCeEEEEhhhcCCC-CHHHHHHHHHHHHHcCCEE
Confidence 456666666654455553333233344455544446777777777665 5777777788777766644
No 90
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=36.79 E-value=1.3e+02 Score=22.50 Aligned_cols=73 Identities=7% Similarity=0.054 Sum_probs=43.8
Q ss_pred CeEEEEeCC---CCh-HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHHHHH
Q 028320 28 KEIVVVCDP---SYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDAL 103 (210)
Q Consensus 28 ~~ivVv~~~---~~~-~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~~~~ 103 (210)
++++||||. ..| ..+.+.+.+.|.+|.++.-.......+...++.+. ..-+..+.+| +.+++.++++++...
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D--v~~~~~v~~~~~~~~ 81 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN--QPEAHLYQID--VQSDEEVINGFEQIG 81 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT--CSSCEEEECC--TTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCcEEEEEcc--CCCHHHHHHHHHHHH
Confidence 678899983 245 34555555668777666444444455555555543 1223444555 568889998888765
Q ss_pred h
Q 028320 104 R 104 (210)
Q Consensus 104 ~ 104 (210)
+
T Consensus 82 ~ 82 (256)
T 4fs3_A 82 K 82 (256)
T ss_dssp H
T ss_pred H
Confidence 4
No 91
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=36.57 E-value=1.3e+02 Score=25.45 Aligned_cols=73 Identities=11% Similarity=0.165 Sum_probs=44.5
Q ss_pred CCCeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHH-HHHHHHHHcc-----cCCCCEEEEEeCCCCCCCHHHHHHH
Q 028320 26 EVKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQ-DSVYSGLQEV-----DFNSELVCIHDSARPLVLSKDVQKV 98 (210)
Q Consensus 26 ~~~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~-~si~~~l~~~-----~~~~d~vl~~~~d~Pli~~~~i~~~ 98 (210)
.-.+.++++|.-.+ ..+...++.+|.+|..+.-...+. .+...+.... -..+|+|+.+.++..+++.+.+..|
T Consensus 245 L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~atgt~~lI~~e~l~~M 324 (464)
T 3n58_A 245 MAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTTGNKDVITIDHMRKM 324 (464)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEECCSSSSSBCHHHHHHS
T ss_pred ccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEECCCCccccCHHHHhcC
Confidence 34678888898877 456677778898876553222111 1111111111 1247999888888888888887655
No 92
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=36.55 E-value=1.6e+02 Score=23.30 Aligned_cols=100 Identities=5% Similarity=-0.067 Sum_probs=57.7
Q ss_pred cCCeehHHHHHHHHhcC-CCCCeEEEEeCCCChHHHHHHHhhcCCcEEEec-----CCccHHHHHHHHHHcccCCCCEEE
Q 028320 8 LLGQPIALYSFYTFSRM-VEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL-----PGKERQDSVYSGLQEVDFNSELVC 81 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~-~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~-----~~~~~~~si~~~l~~~~~~~d~vl 81 (210)
-+|..-+..++..+... +.-++|++....-. .....++..|.++..+. ++.-..+.+...++.+.++...++
T Consensus 103 ~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~ 180 (401)
T 7aat_A 103 ISGTGSLRVGANFLQRFFKFSRDVYLPKPSWG--NHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILL 180 (401)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEEESCCT--THHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEE
T ss_pred CcchHHHHHHHHHHHHhccCCCEEEEcCCCch--hHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEE
Confidence 45556666666555411 11256666554332 23455666676655443 111124556667766543345566
Q ss_pred EEeCCCCC---CCHHHHHHHHHHHHhcCCeE
Q 028320 82 IHDSARPL---VLSKDVQKVLMDALRVGAAV 109 (210)
Q Consensus 82 ~~~~d~Pl---i~~~~i~~~i~~~~~~~~~~ 109 (210)
+..+..|. .+.+.++++++.+++++..+
T Consensus 181 i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~l 211 (401)
T 7aat_A 181 HACAHNPTGVDPRQEQWKELASVVKKRNLLA 211 (401)
T ss_dssp ESSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhCCcEE
Confidence 66666666 58899999999888877543
No 93
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=36.44 E-value=1.2e+02 Score=22.07 Aligned_cols=64 Identities=6% Similarity=0.174 Sum_probs=38.6
Q ss_pred HHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCC-CCEEEEEe
Q 028320 17 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN-SELVCIHD 84 (210)
Q Consensus 17 ~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~-~d~vl~~~ 84 (210)
+++.+++.+ + ++.|+|+... ..+...++.+|....+ .+..+....+..+++.+.-+ .+.+++-|
T Consensus 84 ~L~~L~~~G-~-~l~I~T~~~~-~~~~~~l~~lgi~~~f-~~~k~K~~~l~~~~~~lg~~~~~~~~vGD 148 (211)
T 3ij5_A 84 GIRCLITSD-I-DVAIITGRRA-KLLEDRANTLGITHLY-QGQSDKLVAYHELLATLQCQPEQVAYIGD 148 (211)
T ss_dssp HHHHHHHTT-C-EEEEECSSCC-HHHHHHHHHHTCCEEE-CSCSSHHHHHHHHHHHHTCCGGGEEEEEC
T ss_pred HHHHHHHCC-C-EEEEEeCCCH-HHHHHHHHHcCCchhh-cccCChHHHHHHHHHHcCcCcceEEEEcC
Confidence 577777765 3 7888888775 5667778887765333 33344456666666665422 24444444
No 94
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=34.34 E-value=29 Score=23.44 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCC-EEEEEeCCCC
Q 028320 14 ALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSE-LVCIHDSARP 88 (210)
Q Consensus 14 i~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d-~vl~~~~d~P 88 (210)
|...++.+.+... +.++||=|..+. ..+++++..-.+...|+.-. .-++.+....+ ++++.|+|.+
T Consensus 8 l~e~~~~l~~~s~-~~vIvVEGk~D~----~~L~~~g~~~iI~t~Gtal~----~~i~~l~~~~~~VIIltD~D~a 74 (118)
T 1t6t_1 8 LSEWIKELKKASR-EAVILVEGKNDK----KALSKFSIKNVIDLSGKRYA----DVVDMLEGKWEKVILLFDLDTH 74 (118)
T ss_dssp HHHHHHHHHHHTT-TSEEEESSHHHH----HHHHTTTCCCEEECTTSCHH----HHHHHHTTTCSEEEECCCSSHH
T ss_pred HHHHHHHHHHhcC-CcEEEEEChHHH----HHHHHhCcCcEEEECCCcHH----HHHHHHHhCCCEEEEEECCChh
Confidence 4455666665533 677777666542 23445554433444444322 22223332245 6777777654
No 95
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=32.90 E-value=1.5e+02 Score=24.24 Aligned_cols=93 Identities=12% Similarity=0.204 Sum_probs=54.3
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHH----------HHhhcCCcEEEecC---CccHHHHHHHHHHcccC
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEE----------TKEKINVDLKFSLP---GKERQDSVYSGLQEVDF 75 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~----------~~~~~~~~v~~~~~---~~~~~~si~~~l~~~~~ 75 (210)
+|.--+..++.++.+.+ |+|++..++.. ..... .++.+|+.+..+.- +....+.+..++ .+
T Consensus 85 sGt~Ai~~al~all~~G--D~Vl~~~~~~y-~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai---~~ 158 (409)
T 3jzl_A 85 SGTHAISTVLFGILRPD--DELLYITGQPY-DTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKM---TP 158 (409)
T ss_dssp SHHHHHHHHHHHHCCTT--CEEEECSSSCC-TTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHC---CT
T ss_pred cHHHHHHHHHHHhcCCC--CEEEEeCCCCc-HhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhc---cC
Confidence 44445556666665443 66666541322 22232 34556777666542 212245555443 33
Q ss_pred CCCEEEEEe----CCCCCCCHHHHHHHHHHHHh--cCC
Q 028320 76 NSELVCIHD----SARPLVLSKDVQKVLMDALR--VGA 107 (210)
Q Consensus 76 ~~d~vl~~~----~d~Pli~~~~i~~~i~~~~~--~~~ 107 (210)
+...|++.. +..|..+...++++.+..++ ++.
T Consensus 159 ~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~ 196 (409)
T 3jzl_A 159 KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEV 196 (409)
T ss_dssp TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTC
T ss_pred CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCC
Confidence 345666666 78999999999999998887 665
No 96
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=32.56 E-value=1.4e+02 Score=21.46 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=39.1
Q ss_pred HHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCC-CCEEEEEe
Q 028320 17 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN-SELVCIHD 84 (210)
Q Consensus 17 ~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~-~d~vl~~~ 84 (210)
.++.+++.+ -++.|+|+... ..+...++.+|..- +..+.++....+...++.+.-+ .+.+++-|
T Consensus 60 ~l~~L~~~G--~~~~ivT~~~~-~~~~~~l~~lgi~~-~~~~~k~k~~~~~~~~~~~~~~~~~~~~vGD 124 (195)
T 3n07_A 60 GVKALMNAG--IEIAIITGRRS-QIVENRMKALGISL-IYQGQDDKVQAYYDICQKLAIAPEQTGYIGD 124 (195)
T ss_dssp HHHHHHHTT--CEEEEECSSCC-HHHHHHHHHTTCCE-EECSCSSHHHHHHHHHHHHCCCGGGEEEEES
T ss_pred HHHHHHHCC--CEEEEEECcCH-HHHHHHHHHcCCcE-EeeCCCCcHHHHHHHHHHhCCCHHHEEEEcC
Confidence 377777765 37788888775 56677888888663 3333355566677777665422 24444443
No 97
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=31.19 E-value=45 Score=21.47 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=36.0
Q ss_pred HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccC--CCCEEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEE
Q 028320 40 DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF--NSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVL 110 (210)
Q Consensus 40 ~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~--~~d~vl~~~~d~Pli~~~~i~~~i~~~~~~~~~~~ 110 (210)
..+++++++.|.++..+....+ ++..++.+-. +..+|+++.. +.+--++.|...+..|+.+.
T Consensus 16 rkfkdiikkngfkvrtvrspqe----lkdsieelvkkynativvvvvd-----dkewaekairfvkslgaqvl 79 (134)
T 2l69_A 16 RKFKDIIKKNGFKVRTVRSPQE----LKDSIEELVKKYNATIVVVVVD-----DKEWAEKAIRFVKSLGAQVL 79 (134)
T ss_dssp HHHHHHHHHTTCEEEEECSHHH----HHHHHHHHTTCCCCEEEEEECS-----SHHHHHHHHHHHHHHCCCCE
T ss_pred HHHHHHHHhcCceEEEecCHHH----HHHHHHHHHHHhCCeEEEEEEc-----cHHHHHHHHHHHHhcCCeEE
Confidence 3566777888888887765443 3334444422 2345555432 45666777777666676443
No 98
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=30.83 E-value=52 Score=28.98 Aligned_cols=50 Identities=14% Similarity=0.091 Sum_probs=39.0
Q ss_pred CccceecC---CeehHHHHHHHHhcCCCC-CeEEEEeCCCChHHHHHHHhhcCC
Q 028320 2 PKQYLPLL---GQPIALYSFYTFSRMVEV-KEIVVVCDPSYSDIFEETKEKINV 51 (210)
Q Consensus 2 ~K~l~~i~---gkpli~~~i~~~~~~~~~-~~ivVv~~~~~~~~i~~~~~~~~~ 51 (210)
||-+++++ |++++++.++++++.... =.+++-|+....+.+.+.+++||.
T Consensus 133 pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~fgl 186 (630)
T 3ogz_A 133 IKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQL 186 (630)
T ss_dssp EGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHHTTC
T ss_pred CcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHHhCC
Confidence 79999996 999999999998753222 357788888766778888887774
No 99
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=29.84 E-value=1.5e+02 Score=20.94 Aligned_cols=66 Identities=9% Similarity=0.144 Sum_probs=39.0
Q ss_pred HHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCC-CEEEEEeCCCC
Q 028320 17 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNS-ELVCIHDSARP 88 (210)
Q Consensus 17 ~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~-d~vl~~~~d~P 88 (210)
+++.+++.+ + ++.|+|+... ..+...++.+|..-.+. +..+....+..+++.+.-+. +.+++ ||.+
T Consensus 54 ~l~~L~~~g-~-~~~i~T~~~~-~~~~~~~~~lgl~~~f~-~~~~K~~~~~~~~~~~g~~~~~~~~v--GD~~ 120 (189)
T 3mn1_A 54 GIKMLIASG-V-TTAIISGRKT-AIVERRAKSLGIEHLFQ-GREDKLVVLDKLLAELQLGYEQVAYL--GDDL 120 (189)
T ss_dssp HHHHHHHTT-C-EEEEECSSCC-HHHHHHHHHHTCSEEEC-SCSCHHHHHHHHHHHHTCCGGGEEEE--ECSG
T ss_pred HHHHHHHCC-C-EEEEEECcCh-HHHHHHHHHcCCHHHhc-CcCChHHHHHHHHHHcCCChhHEEEE--CCCH
Confidence 677777765 2 7888888775 56677778777653332 22333456666666654222 34443 5554
No 100
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=29.83 E-value=1.5e+02 Score=21.01 Aligned_cols=66 Identities=6% Similarity=0.110 Sum_probs=38.6
Q ss_pred HHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCC-CEEEEEeCCCC
Q 028320 17 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNS-ELVCIHDSARP 88 (210)
Q Consensus 17 ~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~-d~vl~~~~d~P 88 (210)
.++.+++.+ -+++|+|+... ..+...++.+|.... ..+.++....+..+++.+.-+. +.+++ ||.+
T Consensus 54 ~l~~L~~~g--~~~~ivTn~~~-~~~~~~l~~lgl~~~-~~~~kpk~~~~~~~~~~~~~~~~~~~~v--GD~~ 120 (191)
T 3n1u_A 54 GLKLLMAAG--IQVAIITTAQN-AVVDHRMEQLGITHY-YKGQVDKRSAYQHLKKTLGLNDDEFAYI--GDDL 120 (191)
T ss_dssp HHHHHHHTT--CEEEEECSCCS-HHHHHHHHHHTCCEE-ECSCSSCHHHHHHHHHHHTCCGGGEEEE--ECSG
T ss_pred HHHHHHHCC--CeEEEEeCcCh-HHHHHHHHHcCCccc-eeCCCChHHHHHHHHHHhCCCHHHEEEE--CCCH
Confidence 377777665 37888888765 566777788886543 3333333556666666654222 34443 5554
No 101
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=29.23 E-value=2.5e+02 Score=23.43 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=44.3
Q ss_pred CCeEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHH-HHHHHHH-----HcccCCCCEEEEEeCCCCCCCHHHHHHH
Q 028320 27 VKEIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQ-DSVYSGL-----QEVDFNSELVCIHDSARPLVLSKDVQKV 98 (210)
Q Consensus 27 ~~~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~-~si~~~l-----~~~~~~~d~vl~~~~d~Pli~~~~i~~~ 98 (210)
-++.++++|.-.+ ..+...++.+|..|..+.-...+. .+...+. +.+-..+|+|+.+.++..+++.+.+..|
T Consensus 219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~atgt~~lI~~e~l~~M 297 (435)
T 3gvp_A 219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRM 297 (435)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCSCSBCHHHHHHS
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEECCCCcccCCHHHHHhc
Confidence 4678888898877 456667778888776553222111 1111121 1111257998888888889998887655
No 102
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=26.52 E-value=65 Score=26.13 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEeeecc
Q 028320 87 RPLVLSKDVQKVLMDALRVGAAVLGVPAK 115 (210)
Q Consensus 87 ~Pli~~~~i~~~i~~~~~~~~~~~~~~~~ 115 (210)
||+++.+.++++++..++.+.++++.-+.
T Consensus 1 Mp~~~~~~~~~ll~~A~~~~yAV~AfNv~ 29 (349)
T 3elf_A 1 MPIATPEVYAEMLGQAKQNSYAFPAINCT 29 (349)
T ss_dssp -CBCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CceecHHHHHHHHHHHHHcCceEEEEeeC
Confidence 57777777777777766666665555443
No 103
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=26.44 E-value=97 Score=19.80 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=28.3
Q ss_pred cceecCCeehHHHHHHHHhcC-CCCCeEEEEeCCCCh
Q 028320 4 QYLPLLGQPIALYSFYTFSRM-VEVKEIVVVCDPSYS 39 (210)
Q Consensus 4 ~l~~i~gkpli~~~i~~~~~~-~~~~~ivVv~~~~~~ 39 (210)
+..-+|.||+-.|++..+.+. +..++|++-..-+.|
T Consensus 5 ~vv~vg~Kpv~~YV~~~i~~~n~g~~eV~ikA~G~aI 41 (91)
T 3toe_A 5 NVVYIGNKPVMNYVLAVVTQMNGGTSEVILKARGIAI 41 (91)
T ss_dssp CCEECCSSCHHHHHHHHHHHHHTTCCEEEEEEETTHH
T ss_pred CEEEECCCcHHHHHHHHHHHHhCCCCEEEEEEehhHH
Confidence 566789999999999987554 357898888777765
No 104
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=25.97 E-value=1.6e+02 Score=24.17 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=56.9
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHH-----------HHHhhcCCcEEEecC---CccHHHHHHHHHHccc
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFE-----------ETKEKINVDLKFSLP---GKERQDSVYSGLQEVD 74 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~-----------~~~~~~~~~v~~~~~---~~~~~~si~~~l~~~~ 74 (210)
+|.--+..++.++.+.+ |+|++..++.. .... ..++.+|+.+..+.- +....+.+..+++.-
T Consensus 99 sGt~Ai~~al~all~pG--D~Vl~~~~~~y-~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~- 174 (427)
T 3i16_A 99 NGTHALGAALFGNLRPG--NTMLSVCGEPY-DTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED- 174 (427)
T ss_dssp SHHHHHHHHHHHHCCTT--CEEEESSSSCC-GGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC-
T ss_pred cHHHHHHHHHHHHhCCC--CEEEEeCCCcc-HHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC-
Confidence 45445566666665443 66666542322 2122 334556776666542 222356666666531
Q ss_pred CCCCEEEEEe----CCCCCCCHHHHHHHHHHHHh--cCCe
Q 028320 75 FNSELVCIHD----SARPLVLSKDVQKVLMDALR--VGAA 108 (210)
Q Consensus 75 ~~~d~vl~~~----~d~Pli~~~~i~~~i~~~~~--~~~~ 108 (210)
++...|++.. +..|..+...++++.+.+++ ++..
T Consensus 175 ~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~ 214 (427)
T 3i16_A 175 ESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDII 214 (427)
T ss_dssp TTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSE
T ss_pred CCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCE
Confidence 2345666666 78999999999999998887 6653
No 105
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=25.35 E-value=2.1e+02 Score=21.23 Aligned_cols=84 Identities=10% Similarity=-0.033 Sum_probs=49.9
Q ss_pred CCeehHHHHHHHHhcCCCCCeEE-EEeCCCChHHHHHHHhhcCCcEEEec--CCccH---HHHHHHHHHcccCCCCEEEE
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIV-VVCDPSYSDIFEETKEKINVDLKFSL--PGKER---QDSVYSGLQEVDFNSELVCI 82 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~iv-Vv~~~~~~~~i~~~~~~~~~~v~~~~--~~~~~---~~si~~~l~~~~~~~d~vl~ 82 (210)
|+-+-++..+++..+ ..--+|+ |+++++ ....+.++++|+++.... ...++ -..+...|+..+ .|.++
T Consensus 21 G~gsnl~all~~~~~-~~~~eI~~Vis~~~--a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~--~Dliv- 94 (215)
T 3da8_A 21 GTGSLLRSLLDAAVG-DYPARVVAVGVDRE--CRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHE--PDLVV- 94 (215)
T ss_dssp SCCHHHHHHHHHSST-TCSEEEEEEEESSC--CHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTC--CSEEE-
T ss_pred CChHHHHHHHHHHhc-cCCCeEEEEEeCCc--hHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhC--CCEEE-
Confidence 556677788887743 2112444 455544 356678889998865542 11223 234555666654 56644
Q ss_pred EeCCCCCCCHHHHHHH
Q 028320 83 HDSARPLVLSKDVQKV 98 (210)
Q Consensus 83 ~~~d~Pli~~~~i~~~ 98 (210)
+.+=+-+++++.++..
T Consensus 95 lagy~~iL~~~~l~~~ 110 (215)
T 3da8_A 95 SAGFMRILGPQFLSRF 110 (215)
T ss_dssp EEECCSCCCHHHHHHH
T ss_pred EcCchhhCCHHHHhhc
Confidence 4567788898888654
No 106
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=25.13 E-value=1.3e+02 Score=18.88 Aligned_cols=64 Identities=16% Similarity=0.234 Sum_probs=31.7
Q ss_pred eEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHH
Q 028320 29 EIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVL 99 (210)
Q Consensus 29 ~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i 99 (210)
+|+|+-++... ..+.+.++..|..+..+.++ ......+..- ..| +++++..+|-.+.-.+-+.+
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~----~~a~~~l~~~--~~d-lii~D~~l~~~~g~~~~~~l 69 (127)
T 3i42_A 5 QALIVEDYQAAAETFKELLEMLGFQADYVMSG----TDALHAMSTR--GYD-AVFIDLNLPDTSGLALVKQL 69 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTEEEEEESSH----HHHHHHHHHS--CCS-EEEEESBCSSSBHHHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCCEEEECCH----HHHHHHHHhc--CCC-EEEEeCCCCCCCHHHHHHHH
Confidence 45555444322 34556666666555444332 2222233322 245 46688888877765443333
No 107
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=24.44 E-value=2.2e+02 Score=21.05 Aligned_cols=87 Identities=11% Similarity=-0.022 Sum_probs=50.2
Q ss_pred cCCeehHHHHHHHHhcCCCCCeEE-EEeCCCChHHHHHHHhhcCCcEEEecC--CccH---HHHHHHHHHcccCCCCEEE
Q 028320 8 LLGQPIALYSFYTFSRMVEVKEIV-VVCDPSYSDIFEETKEKINVDLKFSLP--GKER---QDSVYSGLQEVDFNSELVC 81 (210)
Q Consensus 8 i~gkpli~~~i~~~~~~~~~~~iv-Vv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~---~~si~~~l~~~~~~~d~vl 81 (210)
-|+-+-++-.++++.+-..--+|+ |+++.+. ....+.++++|+++..... ..++ -..+...|+..+ .|. +
T Consensus 15 SG~gsnl~all~~~~~~~l~~~I~~Visn~~~-a~~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~--~Dl-i 90 (209)
T 4ds3_A 15 SGGGSNMEALIRAAQAPGFPAEIVAVFSDKAE-AGGLAKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLK--PDI-I 90 (209)
T ss_dssp SSCCHHHHHHHHHHTSTTCSEEEEEEEESCTT-CTHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHC--CSE-E
T ss_pred ECCcHHHHHHHHHHHcCCCCcEEEEEEECCcc-cHHHHHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcC--CCE-E
Confidence 345566777888775532112444 5554443 2345678889988755432 1122 244566666654 566 4
Q ss_pred EEeCCCCCCCHHHHHHH
Q 028320 82 IHDSARPLVLSKDVQKV 98 (210)
Q Consensus 82 ~~~~d~Pli~~~~i~~~ 98 (210)
++.+=+-+++++.++..
T Consensus 91 v~agy~~il~~~~l~~~ 107 (209)
T 4ds3_A 91 CLAGYMRLLSGRFIAPY 107 (209)
T ss_dssp EESSCCSCCCHHHHGGG
T ss_pred EEeccccCcCHHHHhhc
Confidence 45577888888887653
No 108
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=23.56 E-value=1.4e+02 Score=18.74 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=32.4
Q ss_pred eEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHH
Q 028320 29 EIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVL 99 (210)
Q Consensus 29 ~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i 99 (210)
+|+|+-++... ..+...++..|..+..+.++ . .|++.+.. ..| +++++-.+|-.+.-.+-+-+
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~----~---~al~~l~~~~~d-lvllD~~~p~~~g~~~~~~l 68 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENG----Q---IALEKLSEFTPD-LIVLXIMMPVMDGFTVLKKL 68 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSH----H---HHHHHHTTBCCS-EEEECSCCSSSCHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCH----H---HHHHHHHhcCCC-EEEEeccCCCCcHHHHHHHH
Confidence 45555444322 34455555666665544332 2 33443432 245 46688999988775544333
No 109
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=23.31 E-value=1.9e+02 Score=23.28 Aligned_cols=38 Identities=8% Similarity=0.042 Sum_probs=25.6
Q ss_pred hHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCC
Q 028320 13 IALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV 51 (210)
Q Consensus 13 li~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~ 51 (210)
.+..+++++++.+.++..+++|+.+. +...+..+.++.
T Consensus 40 ~~a~li~~l~~~~~~~~~~~~tG~h~-~~~~~~~~~~~i 77 (396)
T 3dzc_A 40 KMAPLVQQLCQDNRFVAKVCVTGQHR-EMLDQVLELFSI 77 (396)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECCSSS-HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCcEEEEEecccH-HHHHHHHHhcCC
Confidence 45677888877656777888898875 333444556665
No 110
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=23.06 E-value=2.3e+02 Score=20.96 Aligned_cols=86 Identities=6% Similarity=-0.025 Sum_probs=51.6
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCcEEEecC--CccH---HHHHHHHHHcccCCCCEEEEE
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKER---QDSVYSGLQEVDFNSELVCIH 83 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~v~~~~~--~~~~---~~si~~~l~~~~~~~d~vl~~ 83 (210)
|+-+-++..++++..--.++=+.|+++.+. ....+.++++|+++..+.. ..++ -..+...|+..+ .|.+ ++
T Consensus 14 G~Gsnl~all~~~~~~~~~eI~~Vis~~~~-a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~--~Dli-v~ 89 (215)
T 3tqr_A 14 GNGTNLQAIIGAIQKGLAIEIRAVISNRAD-AYGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYD--PKLI-VL 89 (215)
T ss_dssp SCCHHHHHHHHHHHTTCSEEEEEEEESCTT-CHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTC--CSEE-EE
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEEEeCCcc-hHHHHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcC--CCEE-EE
Confidence 666788888888765311233445554443 3345678889988765421 1222 234566666654 5664 45
Q ss_pred eCCCCCCCHHHHHHH
Q 028320 84 DSARPLVLSKDVQKV 98 (210)
Q Consensus 84 ~~d~Pli~~~~i~~~ 98 (210)
.+=+-+++++.++..
T Consensus 90 agy~~il~~~~l~~~ 104 (215)
T 3tqr_A 90 AGFMRKLGKAFVSHY 104 (215)
T ss_dssp SSCCSCCCHHHHHHT
T ss_pred ccchhhCCHHHHhhc
Confidence 577888999888664
No 111
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=22.69 E-value=1.6e+02 Score=18.95 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=32.9
Q ss_pred eEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCCCCCHHHHHHHHH
Q 028320 29 EIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM 100 (210)
Q Consensus 29 ~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~Pli~~~~i~~~i~ 100 (210)
+|+|+-++... ..+...++..|..+..+.++ ......+.. ...|. ++++..+|-.+.-.+-+.+.
T Consensus 6 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~----~~al~~~~~--~~~dl-vl~D~~lp~~~g~~~~~~lr 71 (136)
T 3t6k_A 6 TLLIVDDDDTVAEMLELVLRGAGYEVRRAASG----EEALQQIYK--NLPDA-LICDVLLPGIDGYTLCKRVR 71 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSH----HHHHHHHHH--SCCSE-EEEESCCSSSCHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCH----HHHHHHHHh--CCCCE-EEEeCCCCCCCHHHHHHHHH
Confidence 45554443322 34455556666665544332 222222222 12454 66889999888755544443
No 112
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=22.53 E-value=67 Score=27.62 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=36.5
Q ss_pred CccceecC-CeehHHHHHHHHhcC----CCCCeEEEEeCCCChHHHHHHHhhcC
Q 028320 2 PKQYLPLL-GQPIALYSFYTFSRM----VEVKEIVVVCDPSYSDIFEETKEKIN 50 (210)
Q Consensus 2 ~K~l~~i~-gkpli~~~i~~~~~~----~~~~~ivVv~~~~~~~~i~~~~~~~~ 50 (210)
||-++++. |+++++..+++++.. +..=..++-|+....+.+++.+++++
T Consensus 146 PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~~ 199 (528)
T 3r3i_A 146 PKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYN 199 (528)
T ss_dssp BGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGGT
T ss_pred CccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhcC
Confidence 89999995 999999999998764 22235677787776567777776653
No 113
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=22.47 E-value=2e+02 Score=20.05 Aligned_cols=51 Identities=10% Similarity=0.149 Sum_probs=31.7
Q ss_pred HHHHHhcCCCCCeEEEEeCCCChHHHHHHHh--hcCCcEEEecCCccHHHHHHHHHHccc
Q 028320 17 SFYTFSRMVEVKEIVVVCDPSYSDIFEETKE--KINVDLKFSLPGKERQDSVYSGLQEVD 74 (210)
Q Consensus 17 ~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~--~~~~~v~~~~~~~~~~~si~~~l~~~~ 74 (210)
.++.+++.+ + ++.|+|+. . .+...++ .++.. +..+..+....+...++.+.
T Consensus 44 ~L~~Lk~~G-i-~~~I~Tg~-~--~~~~~l~~l~lgi~--~~~g~~~K~~~l~~~~~~~g 96 (168)
T 3ewi_A 44 GISLLKKSG-I-EVRLISER-A--CSKQTLSALKLDCK--TEVSVSDKLATVDEWRKEMG 96 (168)
T ss_dssp HHHHHHHTT-C-EEEEECSS-C--CCHHHHHTTCCCCC--EECSCSCHHHHHHHHHHHTT
T ss_pred HHHHHHHCC-C-EEEEEeCc-H--HHHHHHHHhCCCcE--EEECCCChHHHHHHHHHHcC
Confidence 577787765 3 67788877 3 2345666 45555 44455555666777776654
No 114
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=22.20 E-value=1.6e+02 Score=19.51 Aligned_cols=64 Identities=19% Similarity=0.118 Sum_probs=36.6
Q ss_pred eEEEEeCCCCh-HHHHHHHhhcCCcEEE-ecCCccHHHHHHHHHHccc-CCCCEEEEEeCCCCCCCHHHHHHHHH
Q 028320 29 EIVVVCDPSYS-DIFEETKEKINVDLKF-SLPGKERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLM 100 (210)
Q Consensus 29 ~ivVv~~~~~~-~~i~~~~~~~~~~v~~-~~~~~~~~~si~~~l~~~~-~~~d~vl~~~~d~Pli~~~~i~~~i~ 100 (210)
+|.||=++..+ ..+...+++.|..+.. +.++ . .|++.+. ...|. +++|-.+|-.+.-.+-+.+.
T Consensus 10 rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g----~---eAl~~~~~~~~Dl-vllDi~mP~~~G~el~~~lr 76 (123)
T 2lpm_A 10 RVLVVEDESMIAMLIEDTLCELGHEVAATASRM----Q---EALDIARKGQFDI-AIIDVNLDGEPSYPVADILA 76 (123)
T ss_dssp CEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCH----H---HHHHHHHHCCSSE-EEECSSSSSCCSHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCH----H---HHHHHHHhCCCCE-EEEecCCCCCCHHHHHHHHH
Confidence 46665444433 4567777777766432 2222 1 3333332 23455 66899999999876655544
No 115
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=22.03 E-value=2.9e+02 Score=21.61 Aligned_cols=77 Identities=4% Similarity=-0.038 Sum_probs=43.6
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCCCh------HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccCCCCEEEEEeCCCC
Q 028320 15 LYSFYTFSRMVEVKEIVVVCDPSYS------DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARP 88 (210)
Q Consensus 15 ~~~i~~~~~~~~~~~ivVv~~~~~~------~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~~~d~vl~~~~d~P 88 (210)
..+++++.+.+ .+-+.|+|.++.- ..+++.++++|+++.....-. ...+...++.++ .|.++ +.+=+-
T Consensus 13 ~~~L~~L~~~~-~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~~~--~~~~~~~l~~~~--~Dliv-~~~y~~ 86 (305)
T 2bln_A 13 CLGIEALLAAG-YEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVN--HPLWVERIAQLS--PDVIF-SFYYRH 86 (305)
T ss_dssp HHHHHHHHHTT-CEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCC--SHHHHHHHHHTC--CSEEE-EESCCS
T ss_pred HHHHHHHHHCC-CcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCcCC--cHHHHHHHHhcC--CCEEE-Eecccc
Confidence 34567766664 4444566654431 137788888898764332211 233556666654 56644 446667
Q ss_pred CCCHHHHHH
Q 028320 89 LVLSKDVQK 97 (210)
Q Consensus 89 li~~~~i~~ 97 (210)
+++++.++.
T Consensus 87 ilp~~il~~ 95 (305)
T 2bln_A 87 LIYDEILQL 95 (305)
T ss_dssp CCCHHHHTT
T ss_pred ccCHHHHhc
Confidence 788877753
No 116
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=21.52 E-value=1.8e+02 Score=19.17 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=34.1
Q ss_pred eEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHHHHHHH
Q 028320 29 EIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDVQKVLM 100 (210)
Q Consensus 29 ~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i~~~i~ 100 (210)
+|+|+-++... ..+.+.++..|..+..+..+ . .+++.+.. ..| +++++..+|-.+.-.+-+.+.
T Consensus 9 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~----~---~al~~l~~~~~d-lii~D~~l~~~~g~~~~~~lr 74 (154)
T 3gt7_A 9 EILIVEDSPTQAEHLKHILEETGYQTEHVRNG----R---EAVRFLSLTRPD-LIISDVLMPEMDGYALCRWLK 74 (154)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSH----H---HHHHHHTTCCCS-EEEEESCCSSSCHHHHHHHHH
T ss_pred cEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCH----H---HHHHHHHhCCCC-EEEEeCCCCCCCHHHHHHHHH
Confidence 56665544432 34556666666665444332 2 33444432 244 466888888877655444443
No 117
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=21.04 E-value=1.6e+02 Score=18.37 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=28.7
Q ss_pred eEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccC-CCCEEEEEeCCCCCCCHHH
Q 028320 29 EIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKD 94 (210)
Q Consensus 29 ~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~ 94 (210)
+|+|+-++... ..+...++..|..+..+.++ . .+++.+.. ..| +++++..+|-.+.-.
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~----~---~al~~~~~~~~d-lii~D~~~p~~~g~~ 63 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDG----N---EAVEMVEELQPD-LILLDIMLPNKDGVE 63 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSH----H---HHHHHHHTTCCS-EEEEETTSTTTHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEEEEEeCCH----H---HHHHHHhhCCCC-EEEEeCCCCCCCHHH
Confidence 45555444322 34455555566555444332 2 23333321 245 466788888766543
No 118
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=20.96 E-value=1.9e+02 Score=19.98 Aligned_cols=59 Identities=10% Similarity=0.003 Sum_probs=27.1
Q ss_pred eEEEEeCCCCh-HHHHHHHhhcCCcEEEecCCccHHHHHHHHHHcccC-CCCEEEEEeCCCCCCCHHHH
Q 028320 29 EIVVVCDPSYS-DIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF-NSELVCIHDSARPLVLSKDV 95 (210)
Q Consensus 29 ~ivVv~~~~~~-~~i~~~~~~~~~~v~~~~~~~~~~~si~~~l~~~~~-~~d~vl~~~~d~Pli~~~~i 95 (210)
+|+|+-++... ..+...+...|..+..+.++ . .|++.+.. ..|. ++++..+|-.+.-.+
T Consensus 9 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~----~---~al~~~~~~~~dl-vl~D~~lp~~~g~~~ 69 (184)
T 3rqi_A 9 NFLVIDDNEVFAGTLARGLERRGYAVRQAHNK----D---EALKLAGAEKFEF-ITVXLHLGNDSGLSL 69 (184)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECSH----H---HHHHHHTTSCCSE-EEECSEETTEESHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCH----H---HHHHHHhhCCCCE-EEEeccCCCccHHHH
Confidence 45554333322 34455555556555433332 1 23333322 2344 556777776655333
No 119
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=20.91 E-value=2.3e+02 Score=21.66 Aligned_cols=79 Identities=10% Similarity=0.063 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCCh--HHHHHHHhhcCCcEE-EecCCccHHHHHHHHHHccc-CCCCEEEEEeCCCC-
Q 028320 14 ALYSFYTFSRMVEVKEIVVVCDPSYS--DIFEETKEKINVDLK-FSLPGKERQDSVYSGLQEVD-FNSELVCIHDSARP- 88 (210)
Q Consensus 14 i~~~i~~~~~~~~~~~ivVv~~~~~~--~~i~~~~~~~~~~v~-~~~~~~~~~~si~~~l~~~~-~~~d~vl~~~~d~P- 88 (210)
+......+.... -.+|.| ++++.. ..+...++..|..+. .+.+|. .|++.+. ...| ++++|..||
T Consensus 148 l~rA~~~Lr~~l-~~rILv-VdD~~~~~~~l~~~L~~~g~~v~~~a~~g~-------eAl~~~~~~~~d-lvl~D~~MPd 217 (286)
T 3n0r_A 148 IGDAQAEIDAEL-ATEVLI-IEDEPVIAADIEALVRELGHDVTDIAATRG-------EALEAVTRRTPG-LVLADIQLAD 217 (286)
T ss_dssp HHHHHHHHHTSC-CCEEEE-ECCSHHHHHHHHHHHHHTTCEEEEEESSHH-------HHHHHHHHCCCS-EEEEESCCTT
T ss_pred HHHHHhhhhccC-CCcEEE-EcCCHHHHHHHHHHhhccCceEEEEeCCHH-------HHHHHHHhCCCC-EEEEcCCCCC
Confidence 334444444332 234544 565532 345666677787776 555432 2333332 1245 467999999
Q ss_pred CCCHHHHHHHHHHH
Q 028320 89 LVLSKDVQKVLMDA 102 (210)
Q Consensus 89 li~~~~i~~~i~~~ 102 (210)
-++--.+-+.+...
T Consensus 218 ~mdG~e~~~~ir~~ 231 (286)
T 3n0r_A 218 GSSGIDAVKDILGR 231 (286)
T ss_dssp SCCTTTTTHHHHHH
T ss_pred CCCHHHHHHHHHhc
Confidence 67765554444433
No 120
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=20.56 E-value=1.5e+02 Score=24.32 Aligned_cols=93 Identities=15% Similarity=0.236 Sum_probs=51.7
Q ss_pred CCeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHH----------HhhcCCcEEEecC---CccHHHHHHHHHHcccC
Q 028320 9 LGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET----------KEKINVDLKFSLP---GKERQDSVYSGLQEVDF 75 (210)
Q Consensus 9 ~gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~----------~~~~~~~v~~~~~---~~~~~~si~~~l~~~~~ 75 (210)
+|.--+.-++.++.+.+ |+|++..+... ..+... ++.+|..+..+.- +.-..+.+..++ .+
T Consensus 91 sGt~Ai~~al~al~~~G--d~Vl~~~~~~y-~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l---~~ 164 (431)
T 3ht4_A 91 SGTHAISTALFGILRPG--DELLYITGKPY-DTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAI---HS 164 (431)
T ss_dssp SHHHHHHHHHHTTCCTT--CEEEECSSSCC-TTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHC---CT
T ss_pred CHHHHHHHHHHHhCCCC--CEEEEeCCCCc-hhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhc---CC
Confidence 44444444554443322 56666652332 123332 3346766665532 111245555444 32
Q ss_pred CCCEEEEEe----CCCCCCCHHHHHHHHHHHHh--cCC
Q 028320 76 NSELVCIHD----SARPLVLSKDVQKVLMDALR--VGA 107 (210)
Q Consensus 76 ~~d~vl~~~----~d~Pli~~~~i~~~i~~~~~--~~~ 107 (210)
+...|++.. +..+..+...++++.+.+++ ++.
T Consensus 165 ~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~ 202 (431)
T 3ht4_A 165 NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDV 202 (431)
T ss_dssp TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTC
T ss_pred CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCC
Confidence 345566555 78899999999999998887 665
No 121
>2dxq_A AGR_C_4057P, acetyltransferase; structural genomics, PSI-2, protein struc initiative, midwest center for structural genomics, MCSG; 1.80A {Agrobacterium tumefaciens str}
Probab=20.27 E-value=1.3e+02 Score=19.78 Aligned_cols=41 Identities=7% Similarity=0.020 Sum_probs=28.0
Q ss_pred CeehHHHHHHHHhcCCCCCeEEEEeCCCChHHHHHHHhhcCCc
Q 028320 10 GQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD 52 (210)
Q Consensus 10 gkpli~~~i~~~~~~~~~~~ivVv~~~~~~~~i~~~~~~~~~~ 52 (210)
|+-|+.++++.+.+. .+.+|.+.|..... .-....+++|..
T Consensus 99 G~~Ll~~~~~~a~~~-g~~~i~l~v~~~N~-~A~~fY~k~GF~ 139 (150)
T 2dxq_A 99 GRTVVRHAIETAFGA-NCYKVMLLTGRHDP-AVHAFYESCGFV 139 (150)
T ss_dssp HHHHHHHHHHHHHHT-TCSEEEEEECCCCH-HHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHC-CCCEEEEEeCCCCh-HHHHHHHHcCCc
Confidence 567888888888775 47888887776642 234555666654
Done!