BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028321
MLINALSLRRLWICLKWQVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLP
FFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQF
EEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYY
LSYLDNNMLLGRAVGGGGVFVFTKAQPLEL

High Scoring Gene Products

Symbol, full name Information P value
AT2G46910 protein from Arabidopsis thaliana 2.1e-75

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028321
        (210 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2041454 - symbol:AT2G46910 species:3702 "Arabi...   760  2.1e-75   1


>TAIR|locus:2041454 [details] [associations]
            symbol:AT2G46910 species:3702 "Arabidopsis thaliana"
            [GO:0005198 "structural molecule activity" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IEA;IDA] [GO:0010287 "plastoglobule"
            evidence=IDA] InterPro:IPR006843 Pfam:PF04755 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0005198 EMBL:AC004411 GO:GO:0010287
            EMBL:AY062597 EMBL:AY093345 EMBL:AY085727 IPI:IPI00531984
            RefSeq:NP_566091.1 UniGene:At.27400 UniGene:At.63511 STRING:Q8W4F1
            PaxDb:Q8W4F1 PRIDE:Q8W4F1 EnsemblPlants:AT2G46910.1 GeneID:819304
            KEGG:ath:AT2G46910 GeneFarm:4657 TAIR:At2g46910 eggNOG:NOG308149
            HOGENOM:HOG000006134 InParanoid:Q8W4F1 OMA:NIYLQFE
            ProtClustDB:CLSN2688974 Genevestigator:Q8W4F1 Uniprot:Q8W4F1
        Length = 284

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 149/192 (77%), Positives = 170/192 (88%)

Query:    19 VGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSD 78
             V +EG N GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SD
Sbjct:    93 VTVEGFNGGEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSD 152

Query:    79 GGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALI 138
             GG+I NVV+WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE++V+NI I+E+LQALI
Sbjct:   153 GGIIRNVVQWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALI 212

Query:   139 APAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAXXXXX 198
             APAILPRSFLSLQ+LQFIR FKAQIPV  T+PGRRSVGGLYYLSYLDNNMLLGR+     
Sbjct:   213 APAILPRSFLSLQLLQFIRTFKAQIPVNATSPGRRSVGGLYYLSYLDNNMLLGRSVGGGG 272

Query:   199 XXXXTKAQPLEL 210
                 TK+QPLEL
Sbjct:   273 VFVFTKSQPLEL 284


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      210       201   0.00089  111 3  11 22  0.42    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  597 (63 KB)
  Total size of DFA:  166 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.99u 0.11s 16.10t   Elapsed:  00:00:01
  Total cpu time:  15.99u 0.11s 16.10t   Elapsed:  00:00:01
  Start:  Fri May 10 14:11:38 2013   End:  Fri May 10 14:11:39 2013

Back to top