BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028321
(210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W4F1|PAP10_ARATH Probable plastid-lipid-associated protein 10, chloroplastic
OS=Arabidopsis thaliana GN=PAP10 PE=1 SV=1
Length = 284
Score = 331 bits (849), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 158/192 (82%), Positives = 179/192 (93%)
Query: 19 VGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSD 78
V +EG N GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SD
Sbjct: 93 VTVEGFNGGEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSD 152
Query: 79 GGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALI 138
GG+I NVV+WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE++V+NI I+E+LQALI
Sbjct: 153 GGIIRNVVQWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALI 212
Query: 139 APAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGG 198
APAILPRSFLSLQ+LQFIR FKAQIPV T+PGRRSVGGLYYLSYLDNNMLLGR+VGGGG
Sbjct: 213 APAILPRSFLSLQLLQFIRTFKAQIPVNATSPGRRSVGGLYYLSYLDNNMLLGRSVGGGG 272
Query: 199 VFVFTKAQPLEL 210
VFVFTK+QPLEL
Sbjct: 273 VFVFTKSQPLEL 284
>sp|O82291|PAP3_ARATH Probable plastid-lipid-associated protein 3, chloroplastic
OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1
Length = 376
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 77/181 (42%), Gaps = 24/181 (13%)
Query: 35 LDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLL 94
LDG W L YT+ +++ L AA P KV I Q + + +I N S P
Sbjct: 201 LDGNWVLLYTAFSELIPLL-AAGSTPLLKVKSISQSIDTNNL----IIDNSTTLSSP--- 252
Query: 95 EKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQ---------ALIAPAILPR 145
+ +A F+V S I + F+E T++ I + I+ ++L +
Sbjct: 253 --FADFSFSATASFEVRSPSRIEVSFKEGTLKPPVIKSSVDLPESVGVFGQQISLSLLKQ 310
Query: 146 SFLSLQIL--QFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFT 203
S LQ + RA Q P+ PG R L +YLD ++ + R G GG+FV
Sbjct: 311 SLNPLQDVAANISRALSGQPPLKLPFPGNRGSSWLLT-TYLDKDLRISR--GDGGLFVLA 367
Query: 204 K 204
+
Sbjct: 368 R 368
>sp|Q94KU5|PAP3_BRACM Plastid lipid-associated protein 3, chloroplastic OS=Brassica
campestris GN=PAP3 PE=2 SV=1
Length = 360
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 24/181 (13%)
Query: 35 LDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLL 94
LDG W L YT+ ++L L AA P KV I Q + + S I N S P
Sbjct: 185 LDGNWVLLYTAFSELLPLL-AAGSTPLLKVKSISQSIDTKSLS----IDNSTTLSSP--- 236
Query: 95 EKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPR----SFL-- 148
+ +A F+V + I + F+E T++ I + + + + SFL
Sbjct: 237 --FADFSFSATASFEVRTPSRIEVSFKEGTLKPPEIKSSVDLPESVGVFGQEINLSFLKQ 294
Query: 149 SLQILQFI-----RAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFT 203
SL LQ + RA Q P+ PG R L +YLD ++ + R G GG+FV
Sbjct: 295 SLNPLQDVAANISRAISGQPPLKLPFPGNRGSSWL-LTTYLDKDLRISR--GDGGLFVLA 351
Query: 204 K 204
+
Sbjct: 352 R 352
>sp|Q9LW57|PAP6_ARATH Probable plastid-lipid-associated protein 6, chloroplastic
OS=Arabidopsis thaliana GN=PAP6 PE=1 SV=1
Length = 284
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 40/182 (21%)
Query: 27 GEPIDLV----KLDGTWRLQYTSAPDVLVLFEAAARLPFFK-----VGQIFQKFECRDKS 77
G P+DL KL G WRL Y+SA L + LP + +GQ+FQ+ + K
Sbjct: 123 GGPVDLTDDLDKLQGKWRLLYSSAFSSRSLGGSRPGLPTGRLIPVTLGQVFQRIDVFSK- 181
Query: 78 DGGVICNV---VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEEL 134
D I V W PPL AT ++ KF+++ I + FE+ TV+ ++
Sbjct: 182 DFDNIAEVELGAPWPFPPL-----EATATLAHKFELLGTCKIKITFEKTTVKTSGNLSQI 236
Query: 135 QALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAV 194
P LP SF P +N PG G + ++Y+D+ M + R
Sbjct: 237 PPFDIPR-LPDSFR---------------PSSN--PGT----GDFEVTYVDDTMRITRGD 274
Query: 195 GG 196
G
Sbjct: 275 RG 276
>sp|Q7XBW5|PAP3_ORYSJ Probable plastid-lipid-associated protein 3, chloroplastic OS=Oryza
sativa subsp. japonica GN=PAP3 PE=3 SV=1
Length = 374
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 21 LEGCN-MGEPIDLVKL-DGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSD 78
LE N EP+ L G W L YT+ ++L + A P FKV +I Q+ + +
Sbjct: 181 LEATNPTPEPVQATHLLAGNWILIYTAYSELLPILAVGA-APLFKVDEISQEIDTNSMT- 238
Query: 79 GGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALI 138
I N + + +A FDV S I +QF+E + Q IS + L
Sbjct: 239 ---IVNAST-----ISSPFASFSFSATASFDVQSPSRIEVQFKEGSFQPPKISSSVD-LP 289
Query: 139 APAILPRSFLSLQILQFI-----RAFKA-------QIPVTNTTPGRRSVGGLYYLSYLDN 186
A + +SL +Q + +AF + Q P+ PG +YLD
Sbjct: 290 AEVDIFGQKISLGPVQQVLNPLQQAFASIAGSISGQPPLKLPIPGNNRARSWLLTTYLDK 349
Query: 187 NMLLGRAVGGGGVFVFTK 204
++ + R G GG+F+ K
Sbjct: 350 DLRISR--GDGGLFILVK 365
>sp|Q94FZ9|PAP1_BRACM Plastid lipid-associated protein 1, chloroplastic OS=Brassica
campestris GN=PAP1 PE=1 SV=1
Length = 327
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 27/183 (14%)
Query: 35 LDGTWRLQYTSAPDVLVLFEAAARL--PFFKVGQIFQKFECRDKSDGGVICNVVRWSVPP 92
L+G W L YTS + LF +R P KV +I Q + SD + N VR++ P
Sbjct: 151 LNGKWILVYTS---FVGLFPLLSRRISPLVKVDEISQTID----SDSFTVHNSVRFASP- 202
Query: 93 LLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTV------QNIYISEELQAL-----IAPA 141
+L +AKF+V S + + ++FE+ + +I I E ++ L + P
Sbjct: 203 ----LATTSLSTNAKFEVRSPKRVQVKFEQGVIGTPQLTDSIEIPEFVEVLGQKIDLNPI 258
Query: 142 ILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFV 201
+ + R +Q P+ + PG S +YLD ++ + R GG VFV
Sbjct: 259 KGLLTSVQDTASSVARTISSQPPLKFSLPG-DSAQSWLLTTYLDKDLRISRG-DGGSVFV 316
Query: 202 FTK 204
+
Sbjct: 317 LIR 319
>sp|Q9ZP40|PG1_PEA Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1
Length = 358
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 24/181 (13%)
Query: 35 LDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLL 94
L+G W L YT++ ++L L AA LP K+ +I Q + D + N L
Sbjct: 183 LNGNWVLLYTASSELLPLL-AAGSLPLLKLDKISQTIDT----DSFTVVNSTT-----LS 232
Query: 95 EKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEEL-----------QALIAPAIL 143
+ VSA F+V S I + F+E ++Q I ++ Q + P +
Sbjct: 233 SPFASFSFSVSASFEVRSPTRIQVTFKEGSLQPPEIKSKIDLPENINIFGQQLSLGPLLQ 292
Query: 144 PRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFT 203
L + R Q P+ PG R+ L +YLD ++ + R G GG+FV
Sbjct: 293 SLGPLENVVANISRVISGQSPLKIPIPGERTSSWLIT-TYLDKDLRISR--GDGGLFVLA 349
Query: 204 K 204
+
Sbjct: 350 R 350
>sp|Q94KU6|PAP2_BRACM Plastid lipid-associated protein 2, chloroplastic OS=Brassica
campestris GN=PAP2 PE=1 SV=1
Length = 319
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 28/190 (14%)
Query: 29 PID-LVKLDGTWRLQYTSAPDVLVLFEAAAR--LPFFKVGQIFQKFECRDKSDGGVICNV 85
P D L L+G W L YTS + LF +R +P KV +I Q + SD + N
Sbjct: 136 PTDALFLLNGKWILAYTS---FVGLFPLLSRGIVPLVKVDEISQTID----SDNFTVENS 188
Query: 86 VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTV------QNIYISEELQALIA 139
V ++ P ++ +AKF++ S + + ++FEE + +I I E ++ L
Sbjct: 189 VLFAGP-----LATTSISTNAKFEIRSPKRVQIKFEEGVIGTPQLTDSIEIPEYVEFLGQ 243
Query: 140 PAILP--RSFL-SLQ--ILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAV 194
L R L S+Q R +Q P+ + PG S +YLD ++ + R
Sbjct: 244 KIDLTPIRGLLTSVQDTATSVARTISSQPPLKFSLPG-DSAQSWLLTTYLDKDIRISRG- 301
Query: 195 GGGGVFVFTK 204
GG VFV K
Sbjct: 302 DGGSVFVLIK 311
>sp|O49629|PAP2_ARATH Probable plastid-lipid-associated protein 2, chloroplastic
OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1
Length = 310
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 27/183 (14%)
Query: 35 LDGTWRLQYTSAPDVLVLFEAAAR--LPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPP 92
L+G W L YTS + LF +R +P KV +I Q + SD + N VR++ P
Sbjct: 134 LNGKWILAYTS---FVNLFPLLSRGIVPLIKVDEISQTID----SDNFTVQNSVRFAGP- 185
Query: 93 LLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTV------QNIYISEELQALIAPAILP-- 144
++ +AKF++ S + + ++FE+ + +I I E ++ L L
Sbjct: 186 ----LGTNSISTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPEYVEVLGQKIDLNPI 241
Query: 145 RSFL-SLQ--ILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFV 201
R L S+Q R +Q P+ + P + L +YLD ++ + R GG VFV
Sbjct: 242 RGLLTSVQDTASSVARTISSQPPLKFSLPADNAQSWLLT-TYLDKDIRISRG-DGGSVFV 299
Query: 202 FTK 204
K
Sbjct: 300 LIK 302
>sp|Q96398|CHRC_CUCSA Chromoplast-specific carotenoid-associated protein, chromoplast
OS=Cucumis sativus GN=CHRC PE=1 SV=1
Length = 322
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 24/184 (13%)
Query: 32 LVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVP 91
L L+G W L YT+ + L + LP KV +I Q + S+ + N V++S P
Sbjct: 144 LTLLNGKWILAYTTFAGLFPLL--SRNLPLVKVEEISQTID----SENLTVQNSVQFSGP 197
Query: 92 PLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTV------QNIYISEELQAL-----IAP 140
++ +AKF+V S ++++FEE + +I I + + L P
Sbjct: 198 -----LATTSITTNAKFEVRSPLRVHIKFEEGVIGTPQLTDSIVIPDNVDFLGQKIDFTP 252
Query: 141 AILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVF 200
S L + +Q P+ + R V +YLD ++ + R GG VF
Sbjct: 253 FNGIISSLQDTASNVAKTISSQPPIKFSISNTR-VESWLLTTYLDEDLRISRG-DGGSVF 310
Query: 201 VFTK 204
V K
Sbjct: 311 VLLK 314
>sp|O81439|PAP1_ARATH Probable plastid-lipid-associated protein 1, chloroplastic
OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1
Length = 318
Score = 37.0 bits (84), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 27/183 (14%)
Query: 35 LDGTWRLQYTSAPDVLVLFEAAARL--PFFKVGQIFQKFECRDKSDGGVICNVVRWSVPP 92
L+G W L YTS + LF +R P KV +I Q + SD + N VR++ P
Sbjct: 142 LNGKWILAYTS---FVGLFPLLSRRIEPLVKVDEISQTID----SDSFTVQNSVRFAGP- 193
Query: 93 LLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTV------QNIYISEELQAL-----IAPA 141
+ +AKF++ S + + ++FE+ + +I I E ++ L + P
Sbjct: 194 ----FSTTSFSTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPESVEVLGQKIDLNPI 249
Query: 142 ILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFV 201
+ + R Q P+ + P + L +YLD ++ + R GG V+V
Sbjct: 250 KGLLTSVQDTASSVARTISNQPPLKFSLPSDNTQSWLLT-TYLDKDLRISRG-DGGSVYV 307
Query: 202 FTK 204
K
Sbjct: 308 LIK 310
>sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu
GN=PAP PE=2 SV=1
Length = 323
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 35/190 (18%)
Query: 32 LVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVP 91
L L+ W L YTS + L + LP +V +I Q + S+ + N ++++ P
Sbjct: 144 LTLLNAKWILVYTSFSGLFPLL-SRGTLPLARVEEISQTID----SENFTVQNSIQFAGP 198
Query: 92 PLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS--FLS 149
++ +AKF+V S + + ++FEE + +++ L +LP + FL
Sbjct: 199 -----LATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSL-------VLPENVEFLG 246
Query: 150 LQ--------ILQFIRAFKAQIP--VTNTTPGRRSVGGLYYLS-----YLDNNMLLGRAV 194
+ IL ++ + + +++ P + S+ S YLD ++ + RA
Sbjct: 247 QKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRA- 305
Query: 195 GGGGVFVFTK 204
G VFVF K
Sbjct: 306 DAGSVFVFIK 315
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster
GN=HERC2 PE=1 SV=3
Length = 4912
Score = 34.3 bits (77), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 42 QYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGAT 101
+Y A +++ E A P ++ ++ R + GG++ N + VPP + E
Sbjct: 1509 RYCKAHNLMWHQEFATEHPVQELERLLSAVLIRHQYLGGLVLNALETEVPPPRQLGEIIR 1568
Query: 102 LVVSAKFDVVSVR-NIYLQFEEVTVQNIYISEELQAL---IAPAILP--RSFLSLQILQF 155
LV AK+ VV R + ++EV I E L+ L + PAI P R L ILQ
Sbjct: 1569 LVHQAKWSVVRTRQQLNRSYKEVCAP---ILERLRFLLYEVRPAISPQQRGLRRLPILQR 1625
Query: 156 IRAFK 160
FK
Sbjct: 1626 PPRFK 1630
>sp|Q6K439|PAP2_ORYSJ Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=PAP2 PE=2 SV=1
Length = 319
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 42/194 (21%)
Query: 32 LVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVP 91
L L+G W L YTS + L + + KV +I Q + S+ + N +++S P
Sbjct: 140 LTLLNGKWILAYTSFSQLFPLLGSGSLPQLVKVEEISQTID----SENFTVQNCIKFSGP 195
Query: 92 PLLEKEEGATLVVS--AKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSF-- 147
AT VS AKF+V S + + ++F+E + +++ + +LP F
Sbjct: 196 -------LATTSVSTNAKFEVRSPKRVQIKFDEGIIGTPQLTDSI-------VLPEKFEL 241
Query: 148 ----LSLQILQFI------------RAFKAQIPVTNTTPGRRSVGGLYYL-SYLDNNMLL 190
+ L L+ I R Q P+ P R + L +YLD+ + +
Sbjct: 242 FGQNIDLTPLKGIFSSIENAASSVARTISGQPPL--KIPIRTDNAESWLLTTYLDDELRI 299
Query: 191 GRAVGGGGVFVFTK 204
R G +FV K
Sbjct: 300 SRG-DGSSIFVLFK 312
>sp|P80471|LIPC_SOLTU Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2
Length = 326
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 32 LVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVP 91
L L+G W L YTS + L + LP +V +I Q + S+ + N V ++ P
Sbjct: 147 LTLLNGKWILAYTSFSGLFPLL-SRGNLPLVRVEEISQTID----SESFTVQNSVVFAGP 201
Query: 92 PLLEKEEGATLVVSAKFDVVSVRNIYLQFEE 122
++ +AKF+V S + + ++FEE
Sbjct: 202 -----LATTSISTNAKFEVRSPKRVQIKFEE 227
>sp|O99019|LIPC_SOLDE Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1
Length = 326
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 32 LVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVP 91
L L+G W L YTS + L + LP +V +I Q + S+ + N V ++ P
Sbjct: 147 LTLLNGKWILAYTSFSGLFPLL-SRGNLPLVRVEEISQTID----SESFTVQNSVVFAGP 201
Query: 92 PLLEKEEGATLVVSAKFDVVSVRNIYLQFEE 122
++ +AKF+V S + + ++FEE
Sbjct: 202 -----LATTSISTNAKFEVRSPKRVQIKFEE 227
>sp|P31836|NCAM1_BOVIN Neural cell adhesion molecule 1 OS=Bos taurus GN=NCAM1 PE=1 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 4.1, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 20/119 (16%)
Query: 66 QIFQKF---------ECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNI 116
+IFQK E R+ D ++C+VV P ++ K +G +++ + + N
Sbjct: 113 KIFQKLMFKNAPTPQEFREGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLTNN 172
Query: 117 YLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSV 175
YLQ ++ I ++E IL R ++ + +Q I + V T R+S+
Sbjct: 173 YLQ-----IRGIKKTDEGTYRCEGRILARGEINFKDIQVI------VNVPPTVQARQSI 220
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.142 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,782,549
Number of Sequences: 539616
Number of extensions: 2926188
Number of successful extensions: 7135
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7127
Number of HSP's gapped (non-prelim): 21
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)