Query 028321
Match_columns 210
No_of_seqs 117 out of 360
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 09:41:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 5.9E-37 1.3E-41 254.2 17.3 175 6-203 20-198 (198)
2 PF14869 DUF4488: Domain of un 81.9 19 0.00041 28.5 9.2 68 34-122 2-71 (133)
3 PF05973 Gp49: Phage derived p 65.3 18 0.0004 25.8 5.1 45 3-47 3-50 (91)
4 TIGR00053 addiction module tox 34.0 48 0.001 23.4 2.9 32 9-40 23-55 (89)
5 TIGR02116 toxin_Txe_YoeB toxin 32.7 47 0.001 23.2 2.6 30 10-40 19-49 (80)
6 COG3607 Predicted lactoylgluta 26.9 1.1E+02 0.0024 24.2 3.9 44 3-46 74-129 (133)
7 TIGR02683 upstrm_HI1419 probab 25.1 1.5E+02 0.0033 21.3 4.3 40 3-44 13-53 (95)
8 PF03076 GP3: Equine arteritis 23.7 59 0.0013 25.5 1.9 17 175-191 122-138 (160)
9 PF05015 Plasmid_killer: Plasm 23.6 81 0.0018 22.8 2.6 10 35-44 69-78 (93)
10 PF08212 Lipocalin_2: Lipocali 23.5 3.4E+02 0.0074 20.8 10.2 33 175-208 81-116 (143)
11 PF10047 DUF2281: Protein of u 21.0 1.2E+02 0.0025 20.7 2.8 41 3-43 9-49 (66)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=100.00 E-value=5.9e-37 Score=254.15 Aligned_cols=175 Identities=31% Similarity=0.511 Sum_probs=132.2
Q ss_pred cChhhHHHHHHHHHHHHhcCCCC-CCCc-cCcCceEEEEeecCcchHHHHHhhhcCCceeecceeEEEEeeeCCCCceEE
Q 028321 6 LSLRRLWICLKWQVGLEGCNMGE-PIDL-VKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVIC 83 (210)
Q Consensus 6 ~~~~~~~~I~eli~~LE~~nPtp-P~~~-~lL~G~W~L~yTt~~~~~~ll~~~~~~p~~~~g~i~Q~id~~~~~~~~~v~ 83 (210)
.+++++++|+++|++||++||++ |+++ ++|+|+|+|+|||+.+..+.++ .++.|.+.++++||+||+. ++++.
T Consensus 20 ~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~-~~~~~~~~~~~v~Q~id~~----~~~~~ 94 (198)
T PF04755_consen 20 ASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQ-RGRLPGVRVGRVFQTIDAD----NGRVE 94 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccc-ccccccccccceEEEEECC----CceEE
Confidence 46777899999999999999999 9986 9999999999999999886664 2456788899999999954 78999
Q ss_pred EEEEecC-CCcccccCCcEEEEEEEEEEcCCceEEEEEEEEEeecccchHHHHHhhCCcCCccchhhHHHHHHH-hhhhh
Q 028321 84 NVVRWSV-PPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFI-RAFKA 161 (210)
Q Consensus 84 N~v~~~~-p~~~~~~~G~~~~v~a~~~~~~~~Rv~v~F~~~~l~~~~i~~~l~~~~~~~~~p~~~~~~~~~~~~-~~~~~ 161 (210)
|+++|+. |.. +| ++.+.+++++.+++|+.++|+++.+++..+ ++..+++- .... ..+ +....
T Consensus 95 N~v~~~~~~~~----~~-~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~---l~~~l~~~--~~~~------~~v~~~~~~ 158 (198)
T PF04755_consen 95 NVVELSGFPLL----EG-SVSVRASLEVRSPRRVEVTFERASLKPPSL---LKGVLGPL--KDAL------NNVPRGISD 158 (198)
T ss_pred EEEEEeccCce----EE-EEEEEEEEEEccccEEEEEEEeeEEcccce---eeccchhh--hhhh------hhccccccc
Confidence 9999875 543 44 899999999999999999999999965433 11111000 0000 000 00112
Q ss_pred cCccccCCCCCCCcceEEEEEEecCCeEEEeecCCCcEEEEE
Q 028321 162 QIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFT 203 (210)
Q Consensus 162 ~~Pl~~~~~g~~~~~g~ld~tYLDedlRI~Rg~d~G~vFVl~ 203 (210)
.+|++.+.++. .++||||||||||||||+||+ +|++|||.
T Consensus 159 ~~~~~~~~~~~-~~~g~l~~tYLDedlRI~Rg~-~G~~fVl~ 198 (198)
T PF04755_consen 159 ELPVPLPLPGG-SPKGWLDTTYLDEDLRISRGN-KGSLFVLK 198 (198)
T ss_pred ccccccccCCC-CCceEEEEEEECCCeEEEEcC-CCCEEEeC
Confidence 34444444433 478999999999999999995 99999984
No 2
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=81.89 E-value=19 Score=28.46 Aligned_cols=68 Identities=25% Similarity=0.434 Sum_probs=44.8
Q ss_pred CcCceEEEE-eecC-cchHHHHHhhhcCCceeecceeEEEEeeeCCCCceEEEEEEecCCCcccccCCcEEEEEEEEEEc
Q 028321 34 KLDGTWRLQ-YTSA-PDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVV 111 (210)
Q Consensus 34 lL~G~W~L~-yTt~-~~~~~ll~~~~~~p~~~~g~i~Q~id~~~~~~~~~v~N~v~~~~p~~~~~~~G~~~~v~a~~~~~ 111 (210)
-|.|-|+++ |-+. .++.+- +..+.++..+. +++++.|+.-. |. .|+.+...+.|+..
T Consensus 2 ~l~GVWQ~c~~~~~~~~~~g~---------l~~~~~lKilS-----~Dgtf~Ni~~~--~~-----~~aiIt~~GtY~~~ 60 (133)
T PF14869_consen 2 SLQGVWQLCHYVSESPEVPGK---------LKPSNVLKILS-----DDGTFVNITMI--PK-----SGAIITGYGTYEQP 60 (133)
T ss_pred CceEEEEEEEEeecCcccCce---------EeecccEEEEc-----CCCcEEEEEEe--CC-----CCcEEEEeEEEEEc
Confidence 478999999 4443 332111 33456666565 47899999774 33 23688889999999
Q ss_pred CCceEEEEEEE
Q 028321 112 SVRNIYLQFEE 122 (210)
Q Consensus 112 ~~~Rv~v~F~~ 122 (210)
++....-.-++
T Consensus 61 sD~~Y~E~IeK 71 (133)
T PF14869_consen 61 SDNIYVESIEK 71 (133)
T ss_pred CCccceeeecc
Confidence 98855555555
No 3
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=65.34 E-value=18 Score=25.76 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=34.7
Q ss_pred ccccChhhHHHHHHHHHHHHhcCCCC-CCCccCc--CceEEEEeecCc
Q 028321 3 INALSLRRLWICLKWQVGLEGCNMGE-PIDLVKL--DGTWRLQYTSAP 47 (210)
Q Consensus 3 ~~~~~~~~~~~I~eli~~LE~~nPtp-P~~~~lL--~G~W~L~yTt~~ 47 (210)
+++++...++.|...+..|+..+|.. +-....+ +|-|+|......
T Consensus 3 l~~L~~~~~~~i~~~l~~l~~~G~~l~~~~~k~l~~~~i~ElR~~~~~ 50 (91)
T PF05973_consen 3 LDSLPDKERAKILAQLERLEEHGPSLGEPLFKHLKGDGIYELRVRGGS 50 (91)
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCCccCCCcccccCcCCeEEEEEeecC
Confidence 57889999999999999999888554 2223344 699999997765
No 4
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=34.04 E-value=48 Score=23.44 Aligned_cols=32 Identities=22% Similarity=0.102 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHhcCCCC-CCCccCcCceEE
Q 028321 9 RRLWICLKWQVGLEGCNMGE-PIDLVKLDGTWR 40 (210)
Q Consensus 9 ~~~~~I~eli~~LE~~nPtp-P~~~~lL~G~W~ 40 (210)
...+.|.+++..|...+|.| ......|.|.|.
T Consensus 23 ~~~~~i~~~i~~l~~~~~~p~~~~~~~L~G~~~ 55 (89)
T TIGR00053 23 KDLKKLLKKMEELINTLPLPEHYKDHPLRGPWK 55 (89)
T ss_pred ccHHHHHHHHHHHHcCCCCCcccCCccCcCCcC
Confidence 34467788888887755555 334446777654
No 5
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=32.70 E-value=47 Score=23.17 Aligned_cols=30 Identities=7% Similarity=-0.223 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHhcCCCC-CCCccCcCceEE
Q 028321 10 RLWICLKWQVGLEGCNMGE-PIDLVKLDGTWR 40 (210)
Q Consensus 10 ~~~~I~eli~~LE~~nPtp-P~~~~lL~G~W~ 40 (210)
-.+.|.+++++|+ .||.+ ......|.|.|.
T Consensus 19 ~~~~i~~~i~~l~-~~P~~~~~~~~~L~G~~~ 49 (80)
T TIGR02116 19 LKKKINELIKDVR-RDPFKGKGKPEPLKGDLS 49 (80)
T ss_pred HHHHHHHHHHHHH-cCCCCCCCCcccCCCCCC
Confidence 3467888888886 46765 233455666543
No 6
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=26.89 E-value=1.1e+02 Score=24.15 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=31.8
Q ss_pred ccccChhhHHHHHHHHHHHHhcCCCC---CCCc--------cCcCc-eEEEEeecC
Q 028321 3 INALSLRRLWICLKWQVGLEGCNMGE---PIDL--------VKLDG-TWRLQYTSA 46 (210)
Q Consensus 3 ~~~~~~~~~~~I~eli~~LE~~nPtp---P~~~--------~lL~G-~W~L~yTt~ 46 (210)
+.+++...+++|+++|..--+....+ |.+. .-++| .|+++|...
T Consensus 74 li~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 74 LISLSAGSREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred EEEeccCcHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEEeCH
Confidence 56889999999999998777665554 3432 23444 699999864
No 7
>TIGR02683 upstrm_HI1419 probable addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.
Probab=25.09 E-value=1.5e+02 Score=21.33 Aligned_cols=40 Identities=15% Similarity=-0.095 Sum_probs=25.9
Q ss_pred cccc-ChhhHHHHHHHHHHHHhcCCCCCCCccCcCceEEEEee
Q 028321 3 INAL-SLRRLWICLKWQVGLEGCNMGEPIDLVKLDGTWRLQYT 44 (210)
Q Consensus 3 ~~~~-~~~~~~~I~eli~~LE~~nPtpP~~~~lL~G~W~L~yT 44 (210)
++.+ +....+.|...++.|+. . ++|.--++-.|-|+|.+-
T Consensus 13 l~~L~d~~~~~kI~~~i~~l~~-g-~~~~~K~l~~~~~ElR~r 53 (95)
T TIGR02683 13 LDGLKDPRAKARILARIDRLAL-G-NFGDVKPVGEGVSELRID 53 (95)
T ss_pred HHhCCCHHHHHHHHHHHHHHhc-c-CCCCccCCCCCcEEEEec
Confidence 4567 88888899999999985 3 233212233456777763
No 8
>PF03076 GP3: Equine arteritis virus GP3; InterPro: IPR004310 This entry contains proteins encoded by ORF3 of Equine arteritis virus. They are possible envelope glcoproteins.
Probab=23.68 E-value=59 Score=25.52 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.4
Q ss_pred cceEEEEEEecCCeEEE
Q 028321 175 VGGLYYLSYLDNNMLLG 191 (210)
Q Consensus 175 ~~g~ld~tYLDedlRI~ 191 (210)
.-|.+...|+|||||..
T Consensus 122 glg~~sfsfidedlrlh 138 (160)
T PF03076_consen 122 GLGQLSFSFIDEDLRLH 138 (160)
T ss_pred CcceEEEEEecccceee
Confidence 34789999999999974
No 9
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=23.64 E-value=81 Score=22.84 Aligned_cols=10 Identities=40% Similarity=1.265 Sum_probs=5.1
Q ss_pred cCceEEEEee
Q 028321 35 LDGTWRLQYT 44 (210)
Q Consensus 35 L~G~W~L~yT 44 (210)
++|.|||++.
T Consensus 69 i~~~~RliF~ 78 (93)
T PF05015_consen 69 INGNWRLIFR 78 (93)
T ss_pred eCCCEEEEEE
Confidence 4445555554
No 10
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=23.52 E-value=3.4e+02 Score=20.76 Aligned_cols=33 Identities=18% Similarity=0.487 Sum_probs=25.9
Q ss_pred cceEEEEEEecCC---eEEEeecCCCcEEEEEecCCC
Q 028321 175 VGGLYYLSYLDNN---MLLGRAVGGGGVFVFTKAQPL 208 (210)
Q Consensus 175 ~~g~ld~tYLDed---lRI~Rg~d~G~vFVl~R~~~~ 208 (210)
..|-+.+.|+|.| .-|+-. ++-.+|||.|...+
T Consensus 81 ~~~~YwVl~~D~dY~~~iv~~~-~~~~~WILsR~p~~ 116 (143)
T PF08212_consen 81 PKGNYWVLYTDYDYSWAIVGSP-DREYLWILSRTPQL 116 (143)
T ss_dssp EEEEEEEEEEBTTSSEEEEEEC-CCCEEEEEESSSS-
T ss_pred CCcceEEEEEcCCccEEEEecC-CCCEEEEEeCCCCC
Confidence 4678999999988 556666 47789999998754
No 11
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=21.03 E-value=1.2e+02 Score=20.73 Aligned_cols=41 Identities=20% Similarity=0.082 Sum_probs=30.2
Q ss_pred ccccChhhHHHHHHHHHHHHhcCCCCCCCccCcCceEEEEe
Q 028321 3 INALSLRRLWICLKWQVGLEGCNMGEPIDLVKLDGTWRLQY 43 (210)
Q Consensus 3 ~~~~~~~~~~~I~eli~~LE~~nPtpP~~~~lL~G~W~L~y 43 (210)
|+.|+++...+|..-|+=|...++........+.|.|+=.+
T Consensus 9 i~~LP~~~~~Evldfi~fL~~k~~~~~~~~~~~~~~~~G~l 49 (66)
T PF10047_consen 9 IQQLPEELQQEVLDFIEFLLQKYQQKESKKKKLLGDWKGKL 49 (66)
T ss_pred HHHCCHHHHHHHHHHHHHHHHhcccccccccccccccCCcc
Confidence 56789999999999999999988544333445667776444
Done!