Query 028321
Match_columns 210
No_of_seqs 117 out of 360
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:54:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4i95_A Putative uncharacterize 88.9 5.2 0.00018 30.7 10.2 72 32-123 9-81 (142)
2 4gzv_A Hypothetical protein; A 86.6 7.2 0.00025 30.1 9.8 73 32-124 9-82 (142)
3 3g5o_B Uncharacterized protein 49.5 17 0.00058 25.6 3.7 38 4-42 31-71 (102)
4 2a6s_A Toxin YOEB; YEFM, antit 47.1 25 0.00086 23.1 4.2 19 9-28 22-40 (84)
5 3oei_C RELK (toxin RV3358); to 34.9 39 0.0013 23.9 3.7 37 6-43 31-72 (96)
6 4fxi_A MRNA interferase RELE; 30.7 60 0.0021 22.7 4.1 24 4-28 16-39 (95)
7 1avy_A Fibritin, gpwac M; bact 28.2 46 0.0016 22.5 2.9 37 9-45 29-70 (74)
8 1wmi_A RELE, hypothetical prot 23.6 44 0.0015 21.6 2.2 23 5-28 17-39 (90)
9 3bpq_B Toxin RELE3; protein to 18.2 1.9E+02 0.0065 18.3 4.6 38 5-42 15-57 (88)
10 3pjy_A Hypothetical signal pep 16.8 68 0.0023 24.1 2.1 15 178-192 69-83 (136)
No 1
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=88.95 E-value=5.2 Score=30.70 Aligned_cols=72 Identities=21% Similarity=0.330 Sum_probs=53.0
Q ss_pred ccCcCceEEEEeecCcchHHHHHhhhcCC-ceeecceeEEEEeeeCCCCceEEEEEEecCCCcccccCCcEEEEEEEEEE
Q 028321 32 LVKLDGTWRLQYTSAPDVLVLFEAAARLP-FFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDV 110 (210)
Q Consensus 32 ~~lL~G~W~L~yTt~~~~~~ll~~~~~~p-~~~~g~i~Q~id~~~~~~~~~v~N~v~~~~p~~~~~~~G~~~~v~a~~~~ 110 (210)
..-|.|-|+|+.-.+.+. ..| .++.++.+..+. +++++.|+.-. |. .|+.+...++|+.
T Consensus 9 ~~~L~GvWQ~C~y~s~~p--------d~~g~L~psn~lKIlS-----dDgtF~Ni~m~--~~-----~~aiIt~~GtY~~ 68 (142)
T 4i95_A 9 PAHLQGIWQLCHYVSENP--------DIPGVLKPSNTFKVLS-----DDGRIVNFTIR--PG-----TDAIITGYGTYRQ 68 (142)
T ss_dssp CCSCCEEEEEEEEECSST--------TSCCEEEEEEEEEEEC-----TTSEEEEEECC--TT-----SCCEEEEEEEEEE
T ss_pred cccceeEeEEEEEecCCC--------CCceEeccCccEEEEc-----CCCcEEEEEEe--cC-----CCcEEEEeEEEEe
Confidence 357999999987665431 234 356678888776 57899999877 32 3468889999999
Q ss_pred cCCceEEEEEEEE
Q 028321 111 VSVRNIYLQFEEV 123 (210)
Q Consensus 111 ~~~~Rv~v~F~~~ 123 (210)
.++......-++.
T Consensus 69 ~SD~~Y~E~IeKn 81 (142)
T 4i95_A 69 ISAAAYKESIEKN 81 (142)
T ss_dssp EETTEEEEEEEEE
T ss_pred cCCcceeeeeccc
Confidence 9998777766666
No 2
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=86.57 E-value=7.2 Score=30.06 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=48.9
Q ss_pred ccCcCceEEEEeecCcchHHHHHhhhcCCc-eeecceeEEEEeeeCCCCceEEEEEEecCCCcccccCCcEEEEEEEEEE
Q 028321 32 LVKLDGTWRLQYTSAPDVLVLFEAAARLPF-FKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDV 110 (210)
Q Consensus 32 ~~lL~G~W~L~yTt~~~~~~ll~~~~~~p~-~~~g~i~Q~id~~~~~~~~~v~N~v~~~~p~~~~~~~G~~~~v~a~~~~ 110 (210)
..-|.|-|+|++-.... ...|. +..+..+..|. +++++.|++-. +. .|+.+...++|+.
T Consensus 9 ~~~L~GvWQ~c~y~~~~--------~~~~~~l~~s~~~KIlS-----~DgtF~N~~m~--~~-----~~aiIt~yGtY~l 68 (142)
T 4gzv_A 9 AADLKGIWQLCHYVSES--------PDVPGALKPSNTFKVLS-----DDGRIVNFTII--PG-----ADAIITGYGTYKQ 68 (142)
T ss_dssp SCCCCEEEEEEEEEESS--------TTSCCEEEEEEEEEEEC-----TTSEEEEEECC--TT-----SCCEEEEEEEEEE
T ss_pred cccceEEeEEeeEeecC--------CCCCceEeecCceEEEC-----CCCcEEEEEEe--CC-----CCcEEEEeEEEEe
Confidence 46799999999433221 11232 45567788776 47899999853 22 2468889999999
Q ss_pred cCCceEEEEEEEEE
Q 028321 111 VSVRNIYLQFEEVT 124 (210)
Q Consensus 111 ~~~~Rv~v~F~~~~ 124 (210)
.+++.....-++..
T Consensus 69 ~SD~~Y~E~i~kni 82 (142)
T 4gzv_A 69 LTDDSYKESIEKNI 82 (142)
T ss_dssp EETTEEEEEEEEES
T ss_pred cCCCeeeeeecccc
Confidence 99986655555443
No 3
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=49.51 E-value=17 Score=25.63 Aligned_cols=38 Identities=18% Similarity=0.109 Sum_probs=23.1
Q ss_pred cccChhhHHHHHHHH-HHHHhcCCCCCCC--ccCcCceEEEE
Q 028321 4 NALSLRRLWICLKWQ-VGLEGCNMGEPID--LVKLDGTWRLQ 42 (210)
Q Consensus 4 ~~~~~~~~~~I~eli-~~LE~~nPtpP~~--~~lL~G~W~L~ 42 (210)
..++..-.+.|.++| ..|+ .||.++.. ..-+.|.|++.
T Consensus 31 kkL~~~~~~~I~~~I~~~L~-~~P~~~gk~L~g~~~g~~r~R 71 (102)
T 3g5o_B 31 HKLPPRILAAVVEFAFGDLS-REPLRVGKPLRRELAGTFSAR 71 (102)
T ss_dssp TTSCHHHHHHHHHHHTTHHH-HCTTTSSEECCGGGTTCEEEE
T ss_pred HhCCHHHHHHHHHHHHHHHH-hCcccCCeeccCCCceEEEEE
Confidence 356667778888888 7774 57775211 11245566654
No 4
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=47.06 E-value=25 Score=23.09 Aligned_cols=19 Identities=11% Similarity=-0.242 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHhcCCCC
Q 028321 9 RRLWICLKWQVGLEGCNMGE 28 (210)
Q Consensus 9 ~~~~~I~eli~~LE~~nPtp 28 (210)
...+.|.++++.|+. ||-+
T Consensus 22 ~~~~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 22 RIVKKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHHHHh-CCCC
Confidence 335677888888855 6765
No 5
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=34.90 E-value=39 Score=23.90 Aligned_cols=37 Identities=11% Similarity=0.022 Sum_probs=22.8
Q ss_pred cChhhHHHHHHHHHHHHhcCCCC-CCC---c-cCcCceEEEEe
Q 028321 6 LSLRRLWICLKWQVGLEGCNMGE-PID---L-VKLDGTWRLQY 43 (210)
Q Consensus 6 ~~~~~~~~I~eli~~LE~~nPtp-P~~---~-~lL~G~W~L~y 43 (210)
++..-++.|.++|.+|+ .||.. ... + ..|.|.|+..-
T Consensus 31 ldk~~~krI~~~I~~l~-~nP~~g~gK~e~Lkg~l~g~~s~RI 72 (96)
T 3oei_C 31 ADRKTARRITRLIGEIQ-RDPFSGIGKPEPLQGELSGYWSRRI 72 (96)
T ss_dssp HCHHHHHHHHHHHHHHH-HCTTSSTTCCEECCGGGTTCEEEES
T ss_pred cCHHHHHHHHHHHHHHH-hCCCcCCCchhhcCCCCCCcEEEEC
Confidence 45566788999998887 47753 221 1 23566676544
No 6
>4fxi_A MRNA interferase RELE; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, B-ME on Cys50; HET: CME; 1.80A {Escherichia coli} PDB: 4fxe_D 3kha_A* 4fxh_A* 2kc8_A 2kc9_A 3kiq_y* 3kis_y* 3kiu_y* 3kix_y*
Probab=30.65 E-value=60 Score=22.66 Aligned_cols=24 Identities=13% Similarity=-0.281 Sum_probs=18.6
Q ss_pred cccChhhHHHHHHHHHHHHhcCCCC
Q 028321 4 NALSLRRLWICLKWQVGLEGCNMGE 28 (210)
Q Consensus 4 ~~~~~~~~~~I~eli~~LE~~nPtp 28 (210)
+.|+..-+..|.+.+++|. .||.+
T Consensus 16 ~kLd~~~~~ri~~~l~~l~-~nP~~ 39 (95)
T 4fxi_A 16 RKLGSTVREQLKKKLVEVL-ESPRI 39 (95)
T ss_dssp HHSCHHHHHHHHHHHHHHH-HSCCC
T ss_pred HhCCHHHHHHHHHHHHHHh-hCCCC
Confidence 4577777888999998885 47776
No 7
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=28.15 E-value=46 Score=22.49 Aligned_cols=37 Identities=24% Similarity=0.211 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHhcCCCC--CCC---ccCcCceEEEEeec
Q 028321 9 RRLWICLKWQVGLEGCNMGE--PID---LVKLDGTWRLQYTS 45 (210)
Q Consensus 9 ~~~~~I~eli~~LE~~nPtp--P~~---~~lL~G~W~L~yTt 45 (210)
.++...+.-|.+||..+--| |.| .-.-+|.|-|+-|-
T Consensus 29 ~~l~~~e~~vqaL~~ag~ip~AP~DG~~YVrkDgaWVlL~t~ 70 (74)
T 1avy_A 29 GNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVLLSTF 70 (74)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCCSSCCEEEETTEEEEGGGG
T ss_pred chhhhhhhhhHHHHhcCCCCCCCCCCceeEEecCeeEEeecc
Confidence 35667788899999654334 866 45789999987653
No 8
>1wmi_A RELE, hypothetical protein PHS013; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: d.298.1.2
Probab=23.65 E-value=44 Score=21.57 Aligned_cols=23 Identities=17% Similarity=-0.000 Sum_probs=15.3
Q ss_pred ccChhhHHHHHHHHHHHHhcCCCC
Q 028321 5 ALSLRRLWICLKWQVGLEGCNMGE 28 (210)
Q Consensus 5 ~~~~~~~~~I~eli~~LE~~nPtp 28 (210)
.++..-.+.|.++++.|+. ||.+
T Consensus 17 ~l~~~~~~~i~~~i~~L~~-~P~~ 39 (90)
T 1wmi_A 17 SLPKAHYRRFLEFRDILEY-EPVP 39 (90)
T ss_dssp TSCHHHHHHHHHHHHHHTT-CSCC
T ss_pred HCCHHHHHHHHHHHHHHHh-CCCC
Confidence 4555556778888888854 6654
No 9
>3bpq_B Toxin RELE3; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=18.18 E-value=1.9e+02 Score=18.32 Aligned_cols=38 Identities=8% Similarity=-0.073 Sum_probs=19.8
Q ss_pred ccChhhHHHHHHHHHHHHhc--CCCCCCCccC---cCceEEEE
Q 028321 5 ALSLRRLWICLKWQVGLEGC--NMGEPIDLVK---LDGTWRLQ 42 (210)
Q Consensus 5 ~~~~~~~~~I~eli~~LE~~--nPtpP~~~~l---L~G~W~L~ 42 (210)
.++....+.+.+++++++.+ ||..+..... +.|.|++.
T Consensus 15 ~l~~~~~~~i~~~i~~~~~l~~~P~~~~~~~~l~g~~~~~~~r 57 (88)
T 3bpq_B 15 HVPGHIRKRIKLIIEECQNSNSLNDLKLDIKKIKGYHNYYRIR 57 (88)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCCCC-CCCCEEECTTSSSEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhcccCcCcccCceeccCCCCeEEEE
Confidence 34555556677777777765 4432212112 45666654
No 10
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=16.76 E-value=68 Score=24.06 Aligned_cols=15 Identities=0% Similarity=0.071 Sum_probs=12.2
Q ss_pred EEEEEEecCCeEEEe
Q 028321 178 LYYLSYLDNNMLLGR 192 (210)
Q Consensus 178 ~ld~tYLDedlRI~R 192 (210)
-+|+.|||+|-||..
T Consensus 69 PLDiiFld~~g~Vv~ 83 (136)
T 3pjy_A 69 PLDMLFIASDGTIRT 83 (136)
T ss_dssp CEEEEEECTTSBEEE
T ss_pred ceEEEEECCCCEEEE
Confidence 389999999977754
Done!