Query 028321
Match_columns 210
No_of_seqs 117 out of 360
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 15:54:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028321.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028321hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a2 e.8.1.2 (A:3-429) HIV- 32.8 14 0.001 31.0 3.4 40 5-44 23-74 (427)
2 d1wmia1 d.298.1.2 (A:1-88) Hyp 30.5 16 0.0012 23.2 2.7 24 4-28 16-39 (88)
3 d1z8ma1 d.298.1.2 (A:1-88) Hyp 23.2 17 0.0013 23.5 1.8 30 10-39 23-53 (88)
4 d2gu3a1 d.17.1.6 (A:99-161) Un 20.8 23 0.0017 21.8 1.8 16 176-191 31-46 (63)
5 d1nwza_ d.110.3.1 (A:) Photoac 14.1 47 0.0034 21.7 2.4 18 188-205 107-124 (125)
6 d1kwga1 b.71.1.1 (A:591-644) A 13.9 64 0.0046 19.0 2.6 18 184-203 4-21 (54)
7 d2bkfa1 d.15.2.2 (A:1-85) Next 12.5 44 0.0032 21.6 1.7 9 179-187 44-52 (85)
8 d1wzaa1 b.71.1.1 (A:437-515) B 11.5 34 0.0025 21.1 0.8 19 29-47 34-52 (79)
9 d1mzua_ d.110.3.1 (A:) PYP dom 10.3 81 0.0059 20.0 2.6 18 188-205 93-110 (110)
10 d1dl5a2 d.197.1.1 (A:214-317) 9.5 60 0.0043 21.0 1.5 11 181-191 54-64 (104)
No 1
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=32.81 E-value=14 Score=31.04 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=25.9
Q ss_pred ccChhhHHHHHHHHHHHHhcC-----CCC-CCCccCc------CceEEEEee
Q 028321 5 ALSLRRLWICLKWQVGLEGCN-----MGE-PIDLVKL------DGTWRLQYT 44 (210)
Q Consensus 5 ~~~~~~~~~I~eli~~LE~~n-----Ptp-P~~~~lL------~G~W~L~yT 44 (210)
-++.++++++.+.|++|+..+ |.. |-.++.+ .|+||++--
T Consensus 23 pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~sPvf~V~KKd~gk~Rl~vD 74 (427)
T d1mu2a2 23 PLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLID 74 (427)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBBCEEECCCCC----CEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcCceEEEEcCCCCCcEEEEc
Confidence 478899999999999999975 322 3333332 499999854
No 2
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=30.51 E-value=16 Score=23.23 Aligned_cols=24 Identities=17% Similarity=0.009 Sum_probs=18.9
Q ss_pred cccChhhHHHHHHHHHHHHhcCCCC
Q 028321 4 NALSLRRLWICLKWQVGLEGCNMGE 28 (210)
Q Consensus 4 ~~~~~~~~~~I~eli~~LE~~nPtp 28 (210)
+.++...+..|.+.++.|+. ||.+
T Consensus 16 ~kL~~~~~~~I~~~l~~L~~-~P~~ 39 (88)
T d1wmia1 16 QSLPKAHYRRFLEFRDILEY-EPVP 39 (88)
T ss_dssp TTSCHHHHHHHHHHHHHHTT-CSCC
T ss_pred HhCCHHHHHHHHHHHHHHHh-CcCc
Confidence 56788888899998888765 7766
No 3
>d1z8ma1 d.298.1.2 (A:1-88) Hypothetical protein HP0894 {Helicobacter pylori [TaxId: 210]}
Probab=23.21 E-value=17 Score=23.52 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHhcCCCCC-CCccCcCceE
Q 028321 10 RLWICLKWQVGLEGCNMGEP-IDLVKLDGTW 39 (210)
Q Consensus 10 ~~~~I~eli~~LE~~nPtpP-~~~~lL~G~W 39 (210)
..+.+.+.+..|...+|-|| -....|.|+|
T Consensus 23 ~~~~~~~~i~~L~~~~pl~~~~~dH~L~G~~ 53 (88)
T d1z8ma1 23 DDSVLNEVILTLRKKEPLDPQFQDHALKGKW 53 (88)
T ss_dssp CHHHHHHHHHHHTTSCCCCGGGCCEECSGGG
T ss_pred cHHHHHHHHHHHHcCCCCCccccCccccCcc
Confidence 34567777888877777773 3345555554
No 4
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=20.80 E-value=23 Score=21.78 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=11.9
Q ss_pred ceEEEEEEecCCeEEE
Q 028321 176 GGLYYLSYLDNNMLLG 191 (210)
Q Consensus 176 ~g~ld~tYLDedlRI~ 191 (210)
.-.|++||+|++=|.+
T Consensus 31 ~pvWEVtY~~~~~~l~ 46 (63)
T d2gu3a1 31 VLLWEVTYLDKEGQYS 46 (63)
T ss_dssp EEEEEEEEECTTSCEE
T ss_pred EEEEEEEEEeCCCCEE
Confidence 3478999999875543
No 5
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=14.09 E-value=47 Score=21.65 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=14.0
Q ss_pred eEEEeecCCCcEEEEEec
Q 028321 188 MLLGRAVGGGGVFVFTKA 205 (210)
Q Consensus 188 lRI~Rg~d~G~vFVl~R~ 205 (210)
+|+.|..+.|++|||+|+
T Consensus 107 v~l~~~~~g~~~~v~V~d 124 (125)
T d1nwza_ 107 VHMKKALSGDSYWVFVKR 124 (125)
T ss_dssp EEEEECSSSSEEEEEEEE
T ss_pred EEEEEecCCCEEEEEEEE
Confidence 677777557789999985
No 6
>d1kwga1 b.71.1.1 (A:591-644) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}
Probab=13.90 E-value=64 Score=18.97 Aligned_cols=18 Identities=39% Similarity=0.589 Sum_probs=13.3
Q ss_pred ecCCeEEEeecCCCcEEEEE
Q 028321 184 LDNNMLLGRAVGGGGVFVFT 203 (210)
Q Consensus 184 LDedlRI~Rg~d~G~vFVl~ 203 (210)
|.|.+||.|- .+=+|+|-
T Consensus 4 LPeglRvrrR--G~l~fafN 21 (54)
T d1kwga1 4 LPEGLRLRRR--GTWVFAFN 21 (54)
T ss_dssp CCTTEEEEEE--TTEEEEEE
T ss_pred cCCceEEEEE--CCEEEEEe
Confidence 6789999996 35577763
No 7
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.48 E-value=44 Score=21.61 Aligned_cols=9 Identities=33% Similarity=0.696 Sum_probs=8.2
Q ss_pred EEEEEecCC
Q 028321 179 YYLSYLDNN 187 (210)
Q Consensus 179 ld~tYLDed 187 (210)
+.+.|+|+|
T Consensus 44 ~~lkY~Ddd 52 (85)
T d2bkfa1 44 IQIKYLDEE 52 (85)
T ss_dssp EEEEEECTT
T ss_pred ceEEEEcCC
Confidence 899999986
No 8
>d1wzaa1 b.71.1.1 (A:437-515) Bacterial alpha-Amylase {Halothermothrix orenii [TaxId: 31909]}
Probab=11.54 E-value=34 Score=21.05 Aligned_cols=19 Identities=26% Similarity=0.719 Sum_probs=14.5
Q ss_pred CCCccCcCceEEEEeecCc
Q 028321 29 PIDLVKLDGTWRLQYTSAP 47 (210)
Q Consensus 29 P~~~~lL~G~W~L~yTt~~ 47 (210)
|.....-+|.|.|+|.|..
T Consensus 34 pvkikvasgnwtllfnsgd 52 (79)
T d1wzaa1 34 PVKIKVASGNWTLLFNSGD 52 (79)
T ss_dssp CEEEEEESSCEEEEEESSS
T ss_pred cEEEEEecCcEEEEEccCC
Confidence 4445567899999999864
No 9
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=10.31 E-value=81 Score=19.97 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=13.4
Q ss_pred eEEEeecCCCcEEEEEec
Q 028321 188 MLLGRAVGGGGVFVFTKA 205 (210)
Q Consensus 188 lRI~Rg~d~G~vFVl~R~ 205 (210)
+++.+..+.|++|+|+|.
T Consensus 93 v~~~~~~~~~~~~i~vrr 110 (110)
T d1mzua_ 93 IRMQNAGVPDRYWIFVRK 110 (110)
T ss_dssp EEEEECSSTTEEEEEEEC
T ss_pred EEEEEecCCCEEEEEEEC
Confidence 666665457889999984
No 10
>d1dl5a2 d.197.1.1 (A:214-317) Protein-L-isoaspartyl O-methyltransferase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=9.52 E-value=60 Score=21.00 Aligned_cols=11 Identities=27% Similarity=0.582 Sum_probs=9.4
Q ss_pred EEEecCCeEEE
Q 028321 181 LSYLDNNMLLG 191 (210)
Q Consensus 181 ~tYLDedlRI~ 191 (210)
+-|||++|||-
T Consensus 54 vefl~~~mriy 64 (104)
T d1dl5a2 54 VEFLDDRMRIY 64 (104)
T ss_dssp EEEETTEEEEE
T ss_pred eeecCCcEEEe
Confidence 56899999994
Done!