BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028325
(210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P80194|DPO1_THECA DNA polymerase I, thermostable OS=Thermus caldophilus GN=polA PE=1
SV=2
Length = 834
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 23/166 (13%)
Query: 23 NAGACFSDTTRSASVACCSSSSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLA-D 81
N G + ++A+ SSS N N+P RT L + ++ + E +A D
Sbjct: 558 NTGRLHTRFNQTATATGRLSSSDPNLQNIP-----VRTPLGQRIRRAFVAEAGWALVALD 612
Query: 82 Y-------CSTLEGDDSYSCWRAYFELKDLEKE-------LPKEDIEKLILQSGGVKSLI 127
Y + L GD++ R + E KD+ + +P E ++ L+ ++ +
Sbjct: 613 YSQIELRVLAHLSGDEN--LIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVN-F 669
Query: 128 GCLHGISSIRKAKTDGFASEEKTLGSKRIESSSRPVPDGLPKTLEE 173
G L+G+S+ R ++ EE +R S V + KTLEE
Sbjct: 670 GVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEE 715
>sp|Q640I9|KDM2B_XENLA Lysine-specific demethylase 2B OS=Xenopus laevis GN=kdm2b PE=2 SV=1
Length = 1259
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 45 RTNAYNVPKLEPFSRTKLERAVKEPSLIE 73
R YNV LE FS TKLER VK P++++
Sbjct: 136 REKLYNVISLE-FSHTKLERVVKRPTVVD 163
>sp|Q92AV4|Y1815_LISIN Uncharacterized RNA methyltransferase lin1815 OS=Listeria innocua
serovar 6a (strain CLIP 11262) GN=lin1815 PE=3 SV=1
Length = 457
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 96 RAYFELKDLEKELPKEDIEKLILQSGGVKSLIGCLHGISSIRKAKTDGFASEEKTLGSKR 155
RA+F+L + E +++EK ++ +G ++L+ G+ +I +A FA + K +
Sbjct: 286 RAFFQLNPFQTERLYQEVEKALVLTGS-ETLVDAYCGVGTIGQA----FAGKVKEVRGM- 339
Query: 156 IESSSRPVPDGLPKTLEELEEEERARMPDSPYTRLLRAKGRLPAW 200
D +P+++E+ + D+ Y + +A+ LP W
Sbjct: 340 ---------DIIPESIEDAKRNAEKNGIDNVYYEVGKAEDVLPKW 375
>sp|A8FX83|HTPG_SHESH Chaperone protein HtpG OS=Shewanella sediminis (strain HAW-EB3)
GN=htpG PE=3 SV=1
Length = 638
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 14/153 (9%)
Query: 42 SSSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFEL 101
+ S A N P LE + +E + + E N L D+ +G +S R EL
Sbjct: 445 ADSHEAAANSPHLELLRKKGIEVVLMSERIDEWLINHLTDF----DGKQLHSVTRGDLEL 500
Query: 102 KDLEKELPKEDIEKLILQSGG----VKSLIGCLHGISSIRKAKTDGFA------SEEKTL 151
DLE KE EKL +S G +K +G + TD A E T
Sbjct: 501 GDLEDAGEKEAQEKLETESEGLVKRIKDSLGEKVSAVKVTTRLTDTPACVVAGEGEMSTQ 560
Query: 152 GSKRIESSSRPVPDGLPKTLEELEEEERARMPD 184
K +E++ + VP+ P E AR+ D
Sbjct: 561 MIKLMEAAGQAVPESKPTFEINPEHPLVARLND 593
>sp|Q6P1G2|KDM2B_MOUSE Lysine-specific demethylase 2B OS=Mus musculus GN=Kdm2b PE=1 SV=1
Length = 1309
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 43 SSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTL 86
+ R YNV LE FS TKLE VK P+++ DL D+ +
Sbjct: 134 AQRDKLYNVISLE-FSHTKLEHLVKRPTVV-----DLVDWVDNM 171
>sp|Q8NHM5|KDM2B_HUMAN Lysine-specific demethylase 2B OS=Homo sapiens GN=KDM2B PE=1 SV=1
Length = 1336
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 43 SSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTL 86
+ R YNV LE FS TKLE VK P+++ DL D+ +
Sbjct: 165 AQRDKLYNVISLE-FSHTKLEHLVKRPTVV-----DLVDWVDNM 202
>sp|Q9R0E2|PLOD1_MOUSE Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 OS=Mus musculus
GN=Plod1 PE=1 SV=1
Length = 728
Score = 31.6 bits (70), Expect = 4.1, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 102 KDLEKELPKEDIEKLILQSGGVKSLIGCLHGISSIRKAKTDG-FASEEKTLGSKRIESSS 160
K LEK KED+ L + S V G + ++AK+ F++EE +R+E+
Sbjct: 84 KALEKHADKEDLVILFVDSYDVVFASGPRELLKKFQQAKSQVVFSAEEHIYPDRRLEAKY 143
Query: 161 RPVPDG 166
VPDG
Sbjct: 144 PTVPDG 149
>sp|Q4V7H1|STIL_XENLA SCL-interrupting locus protein homolog OS=Xenopus laevis GN=stil
PE=2 SV=2
Length = 1281
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 11/115 (9%)
Query: 6 VAGSCSVPLRLESKDNLNAGACFSDTT---RSASVACCSSSSRTNAYNVPKLEPFSRTKL 62
V GSC E + N+N A TT RS S + SS+ N +NV SR
Sbjct: 562 VKGSC------EQEQNINGSAQPQGTTPLMRSGSYSRQVSSNFPN-HNV-TFPLHSRHVA 613
Query: 63 ERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLI 117
E A P+L + ++ C +L S +CW A L E P E E ++
Sbjct: 614 EVAKPSPNLAPFHQTNVCTSCHSLVSCHSKNCWPAMGHLTYHTMENPPETCESVM 668
>sp|A1SMB0|MNMA_NOCSJ tRNA-specific 2-thiouridylase MnmA OS=Nocardioides sp. (strain
BAA-499 / JS614) GN=mnmA PE=3 SV=1
Length = 366
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 150 TLGSKRIESSSRPVPDGLPKTLEELEEEERARMPDSPYTRLL--RAKGRLPAWYSLAPD 206
T+G ++ RP PDG P+ + ++E + P+ RL R +G P W PD
Sbjct: 243 TIGQRKGLRIGRPAPDGRPRFVLDIEPVS-GTVTVGPHERLAVHRLRGIRPRWCGTVPD 300
>sp|B2V7F0|ILVC_SULSY Ketol-acid reductoisomerase OS=Sulfurihydrogenibium sp. (strain
YO3AOP1) GN=ilvC PE=3 SV=1
Length = 332
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 116 LILQSGGVKSLIGCLHGISSIRKAKTDGF 144
L L+ G+K +IG L G SI KAK +GF
Sbjct: 34 LNLRDSGIKVIIGLLAGSRSIEKAKAEGF 62
>sp|Q662L1|SECA_BORGA Protein translocase subunit SecA OS=Borrelia garinii (strain PBi)
GN=secA PE=3 SV=1
Length = 899
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 64 RAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLILQSG 121
+AV EP++ KS+ DL DY TL + W +D KE K E L+SG
Sbjct: 3 KAVLEPAIGSKSKRDLKDYLPTLRNINKLERWALLLADEDFSKETQKLKYE---LKSG 57
>sp|Q71YW4|Y1727_LISMF Uncharacterized RNA methyltransferase LMOf2365_1727 OS=Listeria
monocytogenes serotype 4b (strain F2365)
GN=LMOf2365_1727 PE=3 SV=1
Length = 459
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 96 RAYFELKDLEKELPKEDIEKLILQSGGVKSLIGCLHGISSIRKAKTDGFASEEKTLGSKR 155
RA+F+L + E +++EK ++ +G ++L+ G+ +I +A FA + K +
Sbjct: 286 RAFFQLNPFQTERLYQEVEKALVLTGS-ETLVDAYCGVGTIGQA----FAGKVKEVRGM- 339
Query: 156 IESSSRPVPDGLPKTLEELEEEERARMPDSPYTRLLRAKGRLPAWYS 202
D +P+++E+ + ++ Y + +A+ LP W +
Sbjct: 340 ---------DIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVN 377
>sp|P28796|TNAA_PROVU Tryptophanase OS=Proteus vulgaris GN=tnaA PE=1 SV=1
Length = 467
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 65 AVKEPSLIEKSENDLADY--CSTLEGDDSYSCWRAYFELKDLEKELPKED 112
AV L + N ++D+ + + GD++Y+ R Y++LKD KEL D
Sbjct: 43 AVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELFNYD 92
>sp|A3QF50|HTPG_SHELP Chaperone protein HtpG OS=Shewanella loihica (strain ATCC BAA-1088
/ PV-4) GN=htpG PE=3 SV=1
Length = 639
Score = 30.4 bits (67), Expect = 10.0, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 42 SSSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFEL 101
+ S A N P LE + +E + + E+ + L ++ S +G +S R EL
Sbjct: 446 ADSHEAAANSPHLELLRKKGIEVLL----MSERIDEWLINHLSEFDGKQLHSVTRGDLEL 501
Query: 102 KDLEKELPKEDIEKLILQSGG----VKSLIG 128
+LE KE EKL +S G VK ++G
Sbjct: 502 GELEDAAEKEAQEKLETESEGLVKRVKEVLG 532
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,980,315
Number of Sequences: 539616
Number of extensions: 3219687
Number of successful extensions: 8652
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 8641
Number of HSP's gapped (non-prelim): 40
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)