Query 028325
Match_columns 210
No_of_seqs 23 out of 25
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 09:44:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08095 Toxin_25: Hefutoxin f 56.7 5.7 0.00012 24.3 0.8 9 90-98 3-12 (22)
2 PF00615 RGS: Regulator of G p 54.7 26 0.00057 24.5 4.2 39 62-104 2-40 (118)
3 KOG4811 Uncharacterized conser 54.4 6.3 0.00014 32.8 1.1 15 190-204 86-100 (127)
4 PF05841 Apc15p: Apc15p protei 53.8 7.5 0.00016 31.1 1.4 20 161-180 98-117 (125)
5 COG0064 GatB Asp-tRNAAsn/Glu-t 47.1 21 0.00046 35.2 3.5 37 158-194 274-311 (483)
6 TIGR00133 gatB glutamyl-tRNA(G 43.2 24 0.00052 34.4 3.2 37 158-194 272-309 (478)
7 PF00514 Arm: Armadillo/beta-c 40.1 15 0.00032 23.0 0.9 21 112-132 3-23 (41)
8 PF10169 Laps: Learning-associ 38.6 7.3 0.00016 32.1 -0.9 16 189-204 89-104 (127)
9 PRK05477 gatB aspartyl/glutamy 35.1 43 0.00093 32.7 3.5 36 159-194 270-306 (474)
10 PLN02751 glutamyl-tRNA(Gln) am 33.4 50 0.0011 32.9 3.8 35 158-193 337-373 (544)
11 TIGR01425 SRP54_euk signal rec 31.9 36 0.00077 32.8 2.4 108 47-167 274-395 (429)
12 PRK04028 glutamyl-tRNA(Gln) am 31.7 61 0.0013 32.9 4.1 37 157-194 425-463 (630)
13 PF06239 ECSIT: Evolutionarily 30.8 1.6E+02 0.0035 26.7 6.2 60 101-176 126-189 (228)
14 smart00185 ARM Armadillo/beta- 30.7 31 0.00066 20.4 1.2 19 113-131 4-22 (41)
15 PF08109 Antimicrobial14: Lact 29.5 20 0.00044 23.3 0.2 19 124-142 11-29 (31)
16 PF03960 ArsC: ArsC family; I 29.0 24 0.00052 26.5 0.6 30 100-129 24-55 (110)
17 PF00533 BRCT: BRCA1 C Terminu 24.2 50 0.0011 21.9 1.4 17 107-123 18-34 (78)
18 cd03034 ArsC_ArsC Arsenate Red 24.0 31 0.00066 26.4 0.4 31 99-129 26-58 (112)
19 PF13592 HTH_33: Winged helix- 24.0 56 0.0012 22.5 1.7 27 173-199 13-39 (60)
20 TIGR00134 gatE_arch glutamyl-t 23.5 77 0.0017 32.1 3.2 37 158-194 419-456 (620)
21 cd00027 BRCT Breast Cancer Sup 22.9 71 0.0015 19.7 1.9 16 108-123 13-28 (72)
22 KOG1539 WD repeat protein [Gen 20.8 1.2E+02 0.0027 32.3 4.0 86 101-193 690-790 (910)
23 PF04601 DUF569: Protein of un 20.8 24 0.00052 29.5 -0.8 17 185-201 107-123 (142)
24 PF12174 RST: RCD1-SRO-TAF4 (R 20.1 88 0.0019 23.1 2.1 33 96-130 31-64 (70)
No 1
>PF08095 Toxin_25: Hefutoxin family; InterPro: IPR012630 This family consists of the hefutoxins that are found in the venom of the scorpion Heterometrus fulvipes (Indian black scorpion). These toxins, kappa-hefutoxin1 and kappa-hefutoxin2, exhibit no homology to any known toxins. The hefutoxins are potassium channel toxins [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP9_A.
Probab=56.68 E-value=5.7 Score=24.32 Aligned_cols=9 Identities=56% Similarity=1.368 Sum_probs=6.3
Q ss_pred cch-hHHHHH
Q 028325 90 DSY-SCWRAY 98 (210)
Q Consensus 90 es~-sCW~Ay 98 (210)
-|| |||+|=
T Consensus 3 ~cyrscwk~g 12 (22)
T PF08095_consen 3 GCYRSCWKAG 12 (22)
T ss_dssp -TTTHHHHHH
T ss_pred chHHHHHHcc
Confidence 356 899984
No 2
>PF00615 RGS: Regulator of G protein signaling domain; InterPro: IPR000342 RGS (Regulator of G Protein Signalling) proteins are multi-functional, GTPase-accelerating proteins that promote GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []. Upon activation by GPCRs, heterotrimeric G proteins exchange GDP for GTP, are released from the receptor, and dissociate into free, active GTP-bound alpha subunit and beta-gamma dimer, both of which activate downstream effectors. The response is terminated upon GTP hydrolysis by the alpha subunit (IPR001019 from INTERPRO), which can then bind the beta-gamma dimer (IPR001632 from INTERPRO, IPR001770 from INTERPRO) and the receptor. RGS proteins markedly reduce the lifespan of GTP-bound alpha subunits by stabilising the G protein transition state. All RGS proteins contain an 'RGS-box' (or RGS domain), which is required for activity. Some small RGS proteins such as RGS1 and RGS4 are comprised of little more than an RGS domain, while others also contain additional domains that confer further functionality []. RGS domains can be found in conjunction with a variety of domains, including: DEP for membrane targeting (IPR000591 from INTERPRO), PDZ for binding to GPCRs (IPR001478 from INTERPRO), PTB for phosphotyrosine-binding (IPR006020 from INTERPRO), RBD for Ras-binding (IPR003116 from INTERPRO), GoLoco for guanine nucleotide inhibitor activity (IPR003109 from INTERPRO), PX for phosphatidylinositol-binding (IPR001683 from INTERPRO), PXA that is associated with PX (IPR003114 from INTERPRO), PH for stimulating guanine nucleotide exchange (IPR001849 from INTERPRO), and GGL (G protein gamma subunit-like) for binding G protein beta subunits (IPR001770 from INTERPRO) []. Those RGS proteins that contain GGL domains can interact with G protein beta subunits to form novel dimers that prevent G protein gamma subunit binding and G protein alpha subunit association, thereby preventing heterotrimer formation.; GO: 0004871 signal transducer activity; PDB: 2BCJ_A 3PSC_A 3PVU_A 1YM7_B 3PVW_A 1OMW_A 2EBZ_A 2BV1_B 2GTP_D 1CMZ_A ....
Probab=54.67 E-value=26 Score=24.45 Aligned_cols=39 Identities=13% Similarity=0.300 Sum_probs=32.7
Q ss_pred HHHhhcCchhHHhhHhHHhhhhcccCCCcchhHHHHHHhhHHh
Q 028325 62 LERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDL 104 (210)
Q Consensus 62 l~r~~~e~~LiekaE~~l~DyCstLeGDes~sCW~AyFE~~dl 104 (210)
|+.++.+|.. -..+.+||..-.+.+...||.+.-+++..
T Consensus 2 ~~~il~~~~~----~~~F~~Fl~~~~~~~~l~F~~~v~~~~~~ 40 (118)
T PF00615_consen 2 FEKILEDPEG----LELFKEFLEKENCEENLQFWLEVEEFKSS 40 (118)
T ss_dssp HHHHHHSHHH----HHHHHHHHHHTTTTHHHHHHHHHHHHHTS
T ss_pred HHHHHCChHH----HHHHHHHHhHCCCHHHHHHHHHHHHHHhh
Confidence 5667777764 45788999999999999999999999998
No 3
>KOG4811 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.40 E-value=6.3 Score=32.78 Aligned_cols=15 Identities=33% Similarity=0.729 Sum_probs=13.2
Q ss_pred HHHHcCCCCCCCcCC
Q 028325 190 LLRAKGRLPAWYSLA 204 (210)
Q Consensus 190 LLR~~g~~PaWys~~ 204 (210)
|+-.-|-|||||+++
T Consensus 86 Lkdq~G~yPaW~~~~ 100 (127)
T KOG4811|consen 86 LKDQHGQYPAWMNQR 100 (127)
T ss_pred HHHhcCCccHHHhhh
Confidence 777889999999875
No 4
>PF05841 Apc15p: Apc15p protein; InterPro: IPR008402 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. Members of this family are components of the anaphase-promoting complex homologous to subunit Apc15/MND2 [].; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0031145 anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process, 0005680 anaphase-promoting complex
Probab=53.79 E-value=7.5 Score=31.07 Aligned_cols=20 Identities=40% Similarity=0.654 Sum_probs=16.6
Q ss_pred CCCCCCCCCChHHHHHHHhh
Q 028325 161 RPVPDGLPKTLEELEEEERA 180 (210)
Q Consensus 161 fp~PDgLPKt~eELeEEe~a 180 (210)
.-.|=|++||.++++||++.
T Consensus 98 wikPiGv~KTm~~~~eE~~E 117 (125)
T PF05841_consen 98 WIKPIGVPKTMQQMREEEAE 117 (125)
T ss_pred ceeCCCccHHHHHHHHHHHH
Confidence 55788999999999987754
No 5
>COG0064 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]
Probab=47.12 E-value=21 Score=35.19 Aligned_cols=37 Identities=32% Similarity=0.372 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCCCh-HHHHHHHhhcCCCChHHHHHHHc
Q 028325 158 SSSRPVPDGLPKTL-EELEEEERARMPDSPYTRLLRAK 194 (210)
Q Consensus 158 erpfp~PDgLPKt~-eELeEEe~a~MPeS~~TRLLR~~ 194 (210)
-|+||+||-+|--- +++-++=++.|||=|..|.-|.+
T Consensus 274 YRYfpePDl~p~~is~~~i~~~~~~lPelP~~~~~r~~ 311 (483)
T COG0064 274 YRYFPEPDLPPLEISDEWIEEVRATLPELPDEKRERYI 311 (483)
T ss_pred cccCCCCCcCCccCCHHHHHHHHHhCCCCCHHHHHHHH
Confidence 35799999999766 77777888999999998887765
No 6
>TIGR00133 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit. The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both.
Probab=43.24 E-value=24 Score=34.39 Aligned_cols=37 Identities=30% Similarity=0.439 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCCCh-HHHHHHHhhcCCCChHHHHHHHc
Q 028325 158 SSSRPVPDGLPKTL-EELEEEERARMPDSPYTRLLRAK 194 (210)
Q Consensus 158 erpfp~PDgLPKt~-eELeEEe~a~MPeS~~TRLLR~~ 194 (210)
-|.||+||=.|=.. +++-++=++.|||.|..|..|-.
T Consensus 272 YRyfPEpDLppi~i~~~~i~~i~~~lPElP~~~~~R~~ 309 (478)
T TIGR00133 272 YRYFPEPDLPPINIDELLVKEVAGKLPELPSAKRIRLK 309 (478)
T ss_pred cCCCCCCCCCceecCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 46899999888643 34456678899999997766653
No 7
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=40.08 E-value=15 Score=22.96 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCcchhhhhhhh
Q 028325 112 DIEKLILQSGGVKSLIGCLHG 132 (210)
Q Consensus 112 evE~LVrQSGGVKsLIgcLH~ 132 (210)
+--..|.++||+..||..|+.
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~ 23 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKS 23 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS
T ss_pred HHHHHHHHcccHHHHHHHHcC
Confidence 345678899999999999873
No 8
>PF10169 Laps: Learning-associated protein; InterPro: IPR018784 This is a family of 121-amino acid secretory proteins consisting of learning associated protein 18 (LAPS18) and related sequences. LAPS18 functions in the regulation of neuronal cell adhesion and/or movement and synapse attachment []. It has been shown to bind to the ApC/EBP (Aplysia CCAAT/enhancer binding protein) promoter and activate the transcription of ApC/EBP mRNA [].
Probab=38.64 E-value=7.3 Score=32.10 Aligned_cols=16 Identities=31% Similarity=0.758 Sum_probs=14.2
Q ss_pred HHHHHcCCCCCCCcCC
Q 028325 189 RLLRAKGRLPAWYSLA 204 (210)
Q Consensus 189 RLLR~~g~~PaWys~~ 204 (210)
-||-..|-||.||.||
T Consensus 89 Tl~dq~G~YPvWmnqR 104 (127)
T PF10169_consen 89 TLLDQHGQYPVWMNQR 104 (127)
T ss_pred cccCCCCCcCcccCHH
Confidence 5788999999999986
No 9
>PRK05477 gatB aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated
Probab=35.06 E-value=43 Score=32.71 Aligned_cols=36 Identities=33% Similarity=0.422 Sum_probs=27.8
Q ss_pred CCCCCCCCCCCCh-HHHHHHHhhcCCCChHHHHHHHc
Q 028325 159 SSRPVPDGLPKTL-EELEEEERARMPDSPYTRLLRAK 194 (210)
Q Consensus 159 rpfp~PDgLPKt~-eELeEEe~a~MPeS~~TRLLR~~ 194 (210)
|.||+||=.|=.. +++=++=++.|||.|-.|.-|-.
T Consensus 270 RyfPepDlppi~i~~~~i~~i~~~lPelP~~~~~rl~ 306 (474)
T PRK05477 270 RYFPEPDLPPLEISDEWIEEIRAELPELPDAKRARFV 306 (474)
T ss_pred CCCCCCCCCceecCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 7899999888643 45556678899999988877754
No 10
>PLN02751 glutamyl-tRNA(Gln) amidotransferase
Probab=33.41 E-value=50 Score=32.95 Aligned_cols=35 Identities=31% Similarity=0.254 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCC--ChHHHHHHHhhcCCCChHHHHHHH
Q 028325 158 SSSRPVPDGLPK--TLEELEEEERARMPDSPYTRLLRA 193 (210)
Q Consensus 158 erpfp~PDgLPK--t~eELeEEe~a~MPeS~~TRLLR~ 193 (210)
-|+||+||=.|= |++. =++=++.|||.|..|.-|-
T Consensus 337 YRyfPEPDLppi~i~~e~-i~~ir~~lPElP~~~~~Rl 373 (544)
T PLN02751 337 YRYFPEPDLPEVVLTEEY-VDSIRASMPELPEAKRRRY 373 (544)
T ss_pred cCcCCCCCCCceecCHHH-HHHHHHhCCCCHHHHHHHH
Confidence 468999997663 4444 4566789999999887775
No 11
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=31.90 E-value=36 Score=32.76 Aligned_cols=108 Identities=12% Similarity=0.180 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCchhHH-HHhh---cCchhHHhhHhHHhhhhcccCCCcchhHHHHHHhhHHhhh-hCcHHHHHHH---HH
Q 028325 47 NAYNVPKLEPFSRTKL-ERAV---KEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEK-ELPKEDIEKL---IL 118 (210)
Q Consensus 47 ~~~~iPKlepFsrskl-~r~~---~e~~LiekaE~~l~DyCstLeGDes~sCW~AyFE~~dlek-E~PkEevE~L---Vr 118 (210)
.+..|.-|++|+..++ .|++ -=.+|+|||+..+-+. +.-.=+ ++|.+ ..-.+|+-.- |+
T Consensus 274 ~Ge~v~Dle~f~p~~~~~rilgmgDi~~L~ek~~~~~~~~-------~~~~~~------~k~~~~~f~l~D~~~q~~~i~ 340 (429)
T TIGR01425 274 TGEHIDDFEIFKTQPFISKLLGMGDIEGLIDKVQDLKLDD-------NEKALI------EKLKEGTFTLRDMYEQFQNLL 340 (429)
T ss_pred CCCChhhcCcCChHHHHHHHhcCCCcHHHHHHHHHhhhHH-------HHHHHH------HHHHhCCCCHHHHHHHHHHHH
Confidence 3445788999996555 4444 3468999999865541 110000 12222 1334444333 44
Q ss_pred HhCCcchhhhhhhhhhh-hhHHhhc-----CCCCcccccccccccCCCCCCCCCC
Q 028325 119 QSGGVKSLIGCLHGISS-IRKAKTD-----GFASEEKTLGSKRIESSSRPVPDGL 167 (210)
Q Consensus 119 QSGGVKsLIgcLH~is~-m~K~kke-----~~~s~~~~~~~~~~~erpfp~PDgL 167 (210)
..|+.+.+++.|=|... +.+.... ...-....-++.|.+||-.|-|+=|
T Consensus 341 kmG~~~~i~~m~Pg~~~~~~~~~~~~~~~~~~~~~~aii~SMT~~Er~~~~p~i~ 395 (429)
T TIGR01425 341 KMGPLGQILSMIPGFSTDFMSKGNEEESMAKIKKLMTIMDSMTDQELDSTDGKVF 395 (429)
T ss_pred hccCHHHHHHhCcCcchhhhhhhcccccHHHHHhHHHHHhcCCHHHHccCCCccc
Confidence 55999999999887652 3211111 1122223334578888877666655
No 12
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated
Probab=31.69 E-value=61 Score=32.89 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=27.4
Q ss_pred cCCCCCCCCCCCC--ChHHHHHHHhhcCCCChHHHHHHHc
Q 028325 157 ESSSRPVPDGLPK--TLEELEEEERARMPDSPYTRLLRAK 194 (210)
Q Consensus 157 ~erpfp~PDgLPK--t~eELeEEe~a~MPeS~~TRLLR~~ 194 (210)
+.|.||+||=.|= |++. -|+-++.|||.|..|+-|-+
T Consensus 425 a~Ry~PepDlppi~i~~~~-i~~i~~~~Pe~p~~~~~r~~ 463 (630)
T PRK04028 425 AARMYPETDIPPIRITEEL-LEKIKKNLPELPEEKVERLI 463 (630)
T ss_pred ccccCCCCCcCceecCHHH-HHHHHHhCCCCHHHHHHHHH
Confidence 3489999998886 4444 46778899999987665543
No 13
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=30.81 E-value=1.6e+02 Score=26.71 Aligned_cols=60 Identities=27% Similarity=0.389 Sum_probs=39.3
Q ss_pred hHHhhhh--CcHHHHHHHHHHhCCcchh--hhhhhhhhhhhHHhhcCCCCcccccccccccCCCCCCCCCCCCChHHHHH
Q 028325 101 LKDLEKE--LPKEDIEKLILQSGGVKSL--IGCLHGISSIRKAKTDGFASEEKTLGSKRIESSSRPVPDGLPKTLEELEE 176 (210)
Q Consensus 101 ~~dlekE--~PkEevE~LVrQSGGVKsL--IgcLH~is~m~K~kke~~~s~~~~~~~~~~~erpfp~PDgLPKt~eELeE 176 (210)
|+.||.. .|-.|++.+|.|.=|-++. -.+-.+.==|.|-| .-+|||.|.-||+++-||.-
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk----------------~~nP~plp~~lP~Dp~eLA~ 189 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFK----------------NINPWPLPRPLPQDPLELAK 189 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh----------------ccCCCCCCcCCCCCHHHHHH
Confidence 4455554 7999999999999777653 12212222222222 23589999999999998764
No 14
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=30.69 E-value=31 Score=20.41 Aligned_cols=19 Identities=21% Similarity=0.552 Sum_probs=16.2
Q ss_pred HHHHHHHhCCcchhhhhhh
Q 028325 113 IEKLILQSGGVKSLIGCLH 131 (210)
Q Consensus 113 vE~LVrQSGGVKsLIgcLH 131 (210)
-...|.+.||+..|+..|+
T Consensus 4 ~~~~i~~~g~i~~L~~ll~ 22 (41)
T smart00185 4 QKQAVVDAGGLPALVELLK 22 (41)
T ss_pred HHHHHHHCCCHHHHHHHHc
Confidence 4567889999999999986
No 15
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=29.55 E-value=20 Score=23.34 Aligned_cols=19 Identities=47% Similarity=0.613 Sum_probs=15.9
Q ss_pred chhhhhhhhhhhhhHHhhc
Q 028325 124 KSLIGCLHGISSIRKAKTD 142 (210)
Q Consensus 124 KsLIgcLH~is~m~K~kke 142 (210)
..|-|-||||+..+|-||.
T Consensus 11 dflkgylhgisaankhkkg 29 (31)
T PF08109_consen 11 DFLKGYLHGISAANKHKKG 29 (31)
T ss_pred HHHHHHHhhhhhhcccccc
Confidence 5678899999999988764
No 16
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=28.99 E-value=24 Score=26.53 Aligned_cols=30 Identities=37% Similarity=0.649 Sum_probs=21.0
Q ss_pred hhHHhhhh-CcHHHHHHHHHHhC-Ccchhhhh
Q 028325 100 ELKDLEKE-LPKEDIEKLILQSG-GVKSLIGC 129 (210)
Q Consensus 100 E~~dlekE-~PkEevE~LVrQSG-GVKsLIgc 129 (210)
++-|+.++ ...+++..++.+.| |+..||.-
T Consensus 24 ~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~ 55 (110)
T PF03960_consen 24 EFIDYKKEPLSREELRELLSKLGNGPDDLINT 55 (110)
T ss_dssp EEEETTTS---HHHHHHHHHHHTSSGGGGB-T
T ss_pred EeehhhhCCCCHHHHHHHHHHhcccHHHHhcC
Confidence 34444443 78999999999997 78999966
No 17
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=24.17 E-value=50 Score=21.86 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=14.7
Q ss_pred hCcHHHHHHHHHHhCCc
Q 028325 107 ELPKEDIEKLILQSGGV 123 (210)
Q Consensus 107 E~PkEevE~LVrQSGGV 123 (210)
...+++++++|++.||.
T Consensus 18 ~~~~~~l~~~i~~~GG~ 34 (78)
T PF00533_consen 18 SDEREELEQLIKKHGGT 34 (78)
T ss_dssp SSHHHHHHHHHHHTTEE
T ss_pred CCCHHHHHHHHHHcCCE
Confidence 35788999999999986
No 18
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=24.05 E-value=31 Score=26.38 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=24.4
Q ss_pred HhhHHhhhh-CcHHHHHHHHHHhC-Ccchhhhh
Q 028325 99 FELKDLEKE-LPKEDIEKLILQSG-GVKSLIGC 129 (210)
Q Consensus 99 FE~~dlekE-~PkEevE~LVrQSG-GVKsLIgc 129 (210)
|+|.|+.++ ..++++..++.++| |+..||.-
T Consensus 26 ~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~ 58 (112)
T cd03034 26 PEIVEYLKTPPTAAELRELLAKLGISPRDLLRT 58 (112)
T ss_pred eEEEecccCCcCHHHHHHHHHHcCCCHHHHHhc
Confidence 566666555 68999999999997 68888865
No 19
>PF13592 HTH_33: Winged helix-turn helix
Probab=23.97 E-value=56 Score=22.53 Aligned_cols=27 Identities=30% Similarity=0.207 Sum_probs=20.5
Q ss_pred HHHHHHhhcCCCChHHHHHHHcCCCCC
Q 028325 173 ELEEEERARMPDSPYTRLLRAKGRLPA 199 (210)
Q Consensus 173 ELeEEe~a~MPeS~~TRLLR~~g~~Pa 199 (210)
-++++---.+-.+.+.|||+++|...-
T Consensus 13 ~I~~~fgv~ys~~~v~~lL~r~G~s~~ 39 (60)
T PF13592_consen 13 YIEEEFGVKYSPSGVYRLLKRLGFSYQ 39 (60)
T ss_pred HHHHHHCCEEcHHHHHHHHHHcCCccc
Confidence 345555666778899999999999743
No 20
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.
Probab=23.52 E-value=77 Score=32.09 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCCC-hHHHHHHHhhcCCCChHHHHHHHc
Q 028325 158 SSSRPVPDGLPKT-LEELEEEERARMPDSPYTRLLRAK 194 (210)
Q Consensus 158 erpfp~PDgLPKt-~eELeEEe~a~MPeS~~TRLLR~~ 194 (210)
-|.||+||=.|=. .++.-++-++.|||.|..|.=|-+
T Consensus 419 yRy~PEpDlppi~i~~~~i~~i~~~lPelp~~~~~r~~ 456 (620)
T TIGR00134 419 ARMYPETDIPPFRIEDELLEGIRRNLPELPEEKKERIM 456 (620)
T ss_pred cCCCCCCCcCceecCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4889999988873 234446667889999987655543
No 21
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=22.94 E-value=71 Score=19.73 Aligned_cols=16 Identities=25% Similarity=0.545 Sum_probs=14.2
Q ss_pred CcHHHHHHHHHHhCCc
Q 028325 108 LPKEDIEKLILQSGGV 123 (210)
Q Consensus 108 ~PkEevE~LVrQSGGV 123 (210)
..+++++++|.+.||-
T Consensus 13 ~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 13 EERDELKELIEKLGGK 28 (72)
T ss_pred cCHHHHHHHHHHcCCE
Confidence 5789999999999994
No 22
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=20.83 E-value=1.2e+02 Score=32.32 Aligned_cols=86 Identities=26% Similarity=0.280 Sum_probs=52.7
Q ss_pred hHHhhhhCcHHHHHHHHHHhCCcchhhhhhhhhhhhhHHhhcCCCCcccccccccccCCCCCCC-----CCCCCC--hHH
Q 028325 101 LKDLEKELPKEDIEKLILQSGGVKSLIGCLHGISSIRKAKTDGFASEEKTLGSKRIESSSRPVP-----DGLPKT--LEE 173 (210)
Q Consensus 101 ~~dlekE~PkEevE~LVrQSGGVKsLIgcLH~is~m~K~kke~~~s~~~~~~~~~~~erpfp~P-----DgLPKt--~eE 173 (210)
.+||+=+.|....|+||-=||+.+|=-.+|=+...+.|..|-+-. + ...+.-||=.| +-.|.+ ++|
T Consensus 690 ~e~i~y~~~eQldeeLvTlS~lp~Srwq~Ll~LelIk~RnkPke~----P---K~pkkaPFFLp~~~s~g~v~e~~~~~~ 762 (910)
T KOG1539|consen 690 DEDIKYSSPEQLDEELVTLSKLPRSRWQNLLNLELIKKRNKPKEP----P---KKPKKAPFFLPKVPSEGLVLETPAAEE 762 (910)
T ss_pred ccccccCChhHhChhhhhhccCcHHHhhhcccHHHHHhcCCCCCC----C---CccccCCcccccCCcccccccCcchhh
Confidence 466666788888899999999999888887777766655443322 1 23344465444 222332 222
Q ss_pred H-HHHHhhcC-------CCChHHHHHHH
Q 028325 174 L-EEEERARM-------PDSPYTRLLRA 193 (210)
Q Consensus 174 L-eEEe~a~M-------PeS~~TRLLR~ 193 (210)
+ .++.+..| =||+||.+||.
T Consensus 763 ~~~~~~~~~ik~~~~L~~es~F~~~Lre 790 (910)
T KOG1539|consen 763 LNKEEDENKIKKLGLLELESSFTTLLRE 790 (910)
T ss_pred hcchhhhhhhhccccccccchHHHHHhh
Confidence 2 23333333 36999999994
No 23
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=20.79 E-value=24 Score=29.50 Aligned_cols=17 Identities=41% Similarity=0.753 Sum_probs=14.3
Q ss_pred ChHHHHHHHcCCCCCCC
Q 028325 185 SPYTRLLRAKGRLPAWY 201 (210)
Q Consensus 185 S~~TRLLR~~g~~PaWy 201 (210)
+.+-|+||.+|++|+|=
T Consensus 107 ~~~gr~LRANG~~~~Wr 123 (142)
T PF04601_consen 107 HRSGRYLRANGGYPPWR 123 (142)
T ss_pred ecCCceEEcCCCCCCCc
Confidence 34669999999999993
No 24
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=20.13 E-value=88 Score=23.13 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=25.4
Q ss_pred HHHH-hhHHhhhhCcHHHHHHHHHHhCCcchhhhhh
Q 028325 96 RAYF-ELKDLEKELPKEDIEKLILQSGGVKSLIGCL 130 (210)
Q Consensus 96 ~AyF-E~~dlekE~PkEevE~LVrQSGGVKsLIgcL 130 (210)
..+| +|+ +++.+++++-+.+|+.-|.+-|+..|
T Consensus 31 ~~~Y~~~k--~~kIsR~~fvr~lR~IVGD~lL~s~I 64 (70)
T PF12174_consen 31 QKHYEEFK--KKKISREEFVRKLRQIVGDQLLRSAI 64 (70)
T ss_pred HHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 565 34699999999999998888887764
Done!