Query 028325
Match_columns 210
No_of_seqs 23 out of 25
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 16:01:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028325.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028325hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t15a2 c.15.1.3 (A:1758-1859) 42.2 6.2 0.00045 25.1 2.0 16 108-123 18-33 (102)
2 d1tw3a1 a.4.5.29 (A:14-98) Car 33.6 9.7 0.00071 25.2 2.0 26 165-193 32-57 (85)
3 d3pmga2 c.84.1.1 (A:191-303) P 21.7 26 0.0019 23.9 2.5 38 96-135 2-39 (113)
4 d1htaa_ a.22.1.2 (A:) Archaeal 21.4 27 0.0019 21.9 2.3 17 107-123 3-19 (68)
5 d1z3ea1 c.47.1.12 (A:1-114) Re 20.8 11 0.00078 26.0 0.2 31 99-129 27-59 (114)
6 d1qzza1 a.4.5.29 (A:10-101) Ac 16.0 35 0.0025 22.9 2.0 24 168-193 40-63 (92)
7 d1ku5a_ a.22.1.2 (A:) Archaeal 13.7 50 0.0037 20.5 2.2 17 107-123 2-18 (66)
8 d1dkza1 a.8.4.1 (A:507-603) Dn 13.7 43 0.0031 22.2 2.0 13 108-120 1-13 (97)
9 d1zq1c1 a.182.1.2 (C:457-512) 12.7 29 0.0021 21.5 0.8 35 107-142 1-39 (56)
10 d2paga1 d.369.1.1 (A:1-135) Hy 12.7 51 0.0037 23.7 2.3 33 161-195 15-50 (135)
No 1
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.22 E-value=6.2 Score=25.14 Aligned_cols=16 Identities=19% Similarity=0.540 Sum_probs=14.6
Q ss_pred CcHHHHHHHHHHhCCc
Q 028325 108 LPKEDIEKLILQSGGV 123 (210)
Q Consensus 108 ~PkEevE~LVrQSGGV 123 (210)
.++++|++||.+.||.
T Consensus 18 ~~~~~L~~li~~~GG~ 33 (102)
T d1t15a2 18 MPTDQLEWMVQLCGAS 33 (102)
T ss_dssp SCHHHHHHHHHHTTCE
T ss_pred cCHHHHHHHHHHhCCE
Confidence 5789999999999995
No 2
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=33.65 E-value=9.7 Score=25.20 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=20.8
Q ss_pred CCCCCChHHHHHHHhhcCCCChHHHHHHH
Q 028325 165 DGLPKTLEELEEEERARMPDSPYTRLLRA 193 (210)
Q Consensus 165 DgLPKt~eELeEEe~a~MPeS~~TRLLR~ 193 (210)
+| |+|.+||.+.-. ++.....||||-
T Consensus 32 ~g-p~s~~eLA~~~g--~~~~~l~rlLr~ 57 (85)
T d1tw3a1 32 AG-ARTVKALAARTD--TRPEALLRLIRH 57 (85)
T ss_dssp TT-CCBHHHHHHHHT--CCHHHHHHHHHH
T ss_pred cC-CCCHHHHHHHhC--cChhHHHHHHHH
Confidence 45 999999987764 678888888874
No 3
>d3pmga2 c.84.1.1 (A:191-303) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=21.74 E-value=26 Score=23.89 Aligned_cols=38 Identities=21% Similarity=0.390 Sum_probs=28.1
Q ss_pred HHHHhhHHhhhhCcHHHHHHHHHHhCCcchhhhhhhhhhh
Q 028325 96 RAYFELKDLEKELPKEDIEKLILQSGGVKSLIGCLHGISS 135 (210)
Q Consensus 96 ~AyFE~~dlekE~PkEevE~LVrQSGGVKsLIgcLH~is~ 135 (210)
+.|.++ |++-...+-|.+++...-+.|-++.|.||.+.
T Consensus 2 e~Y~~~--l~~~id~~~I~~~~~~~~~lkIv~D~~nGa~~ 39 (113)
T d3pmga2 2 EAYATM--LRNIFDFNALKELLSGPNRLKIRIDAMHGVVG 39 (113)
T ss_dssp HHHHHH--HHTTSCHHHHHHHHHSTTCCCEEEECTTSTTH
T ss_pred HHHHHH--HHHhcCHHHHHHHhccCCCcEEEEECCCCccc
Confidence 356653 66656666777777777789999999999755
No 4
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=21.35 E-value=27 Score=21.88 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=14.3
Q ss_pred hCcHHHHHHHHHHhCCc
Q 028325 107 ELPKEDIEKLILQSGGV 123 (210)
Q Consensus 107 E~PkEevE~LVrQSGGV 123 (210)
|+|++.|.++++..|..
T Consensus 3 eLP~a~I~ri~k~~~~~ 19 (68)
T d1htaa_ 3 ELPIAPIGRIIKNAGAE 19 (68)
T ss_dssp CSCHHHHHHHHHHTTCS
T ss_pred cCcHHHHHHHHHHCCcc
Confidence 58999999999987554
No 5
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=20.85 E-value=11 Score=26.01 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=23.5
Q ss_pred HhhHHhhhh-CcHHHHHHHHHHhC-Ccchhhhh
Q 028325 99 FELKDLEKE-LPKEDIEKLILQSG-GVKSLIGC 129 (210)
Q Consensus 99 FE~~dlekE-~PkEevE~LVrQSG-GVKsLIgc 129 (210)
|++-|+.++ ...++++.++...| |++.||.-
T Consensus 27 ~~~~d~~~~p~s~~eL~~ll~~~~~~~~~lin~ 59 (114)
T d1z3ea1 27 FVERNIFSEPLSIDEIKQILRMTEDGTDEIIST 59 (114)
T ss_dssp EEEEETTTSCCCHHHHHHHHHTCSSCGGGTBCT
T ss_pred eEEEeeeccCCCHHHHHHHHHHhccCHHHHHHh
Confidence 344445554 68999999999996 88999875
No 6
>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}
Probab=15.98 E-value=35 Score=22.91 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=19.6
Q ss_pred CCChHHHHHHHhhcCCCChHHHHHHH
Q 028325 168 PKTLEELEEEERARMPDSPYTRLLRA 193 (210)
Q Consensus 168 PKt~eELeEEe~a~MPeS~~TRLLR~ 193 (210)
|+|.+||.+. .-++.....||||.
T Consensus 40 p~t~~eLA~~--~g~~~~~l~rLlr~ 63 (92)
T d1qzza1 40 ADTLAGLADR--TDTHPQALSRLVRH 63 (92)
T ss_dssp CCSHHHHHHH--HTCCHHHHHHHHHH
T ss_pred CCCHHHHHHH--HCcCchHHHHHHHH
Confidence 8999998875 45678889999885
No 7
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=13.73 E-value=50 Score=20.48 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=14.4
Q ss_pred hCcHHHHHHHHHHhCCc
Q 028325 107 ELPKEDIEKLILQSGGV 123 (210)
Q Consensus 107 E~PkEevE~LVrQSGGV 123 (210)
|+|+..|-++++..|.+
T Consensus 2 ~LP~a~I~rI~k~~~~~ 18 (66)
T d1ku5a_ 2 ELPIAPVDRLIRKAGAE 18 (66)
T ss_dssp CSCHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHhCccc
Confidence 68999999999986554
No 8
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Probab=13.68 E-value=43 Score=22.24 Aligned_cols=13 Identities=23% Similarity=0.624 Sum_probs=10.2
Q ss_pred CcHHHHHHHHHHh
Q 028325 108 LPKEDIEKLILQS 120 (210)
Q Consensus 108 ~PkEevE~LVrQS 120 (210)
+..+||++||+++
T Consensus 1 LS~~EIerMi~eA 13 (97)
T d1dkza1 1 LNEDEIQKMVRDA 13 (97)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3568889998887
No 9
>d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=12.69 E-value=29 Score=21.55 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=24.0
Q ss_pred hCcHHHHHHHHHHhCCc----chhhhhhhhhhhhhHHhhc
Q 028325 107 ELPKEDIEKLILQSGGV----KSLIGCLHGISSIRKAKTD 142 (210)
Q Consensus 107 E~PkEevE~LVrQSGGV----KsLIgcLH~is~m~K~kke 142 (210)
|+|.+..+|+|++.|=- ..|....+ ++-+...-+.
T Consensus 1 ELP~~k~~Ry~~eygLs~~dA~~l~~~~~-~~~Fee~v~~ 39 (56)
T d1zq1c1 1 ELPQAKVERYVKEYKLDRSLAQTLVDDER-DELFEELVSM 39 (56)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHTST-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCChH-HHHHHHHHHc
Confidence 68999999999998744 45555555 3566655443
No 10
>d2paga1 d.369.1.1 (A:1-135) Hypothetical protein PSPTO5518 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=12.69 E-value=51 Score=23.68 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCCCCCCCCChHHHHHHHhhc---CCCChHHHHHHHcC
Q 028325 161 RPVPDGLPKTLEELEEEERAR---MPDSPYTRLLRAKG 195 (210)
Q Consensus 161 fp~PDgLPKt~eELeEEe~a~---MPeS~~TRLLR~~g 195 (210)
-|+|..+| |.+++.+-|+++ +|+ .|-..|+..|
T Consensus 15 ~p~~~e~p-t~e~I~~~E~~lg~~~P~-~yk~fl~~~g 50 (135)
T d2paga1 15 VPVPLELP-DEDQLVEIEEQLFINIPF-VFKEFLLTVS 50 (135)
T ss_dssp CSSCCCCC-CHHHHHHHHHHHTCCCCH-HHHHHHHHHT
T ss_pred CCCCCCCC-CHHHHHHHHHHHCCCCCH-HHHHHHHHhC
Confidence 47899999 889898888875 453 4666666654
Done!