BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028326
         (210 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1R79|A Chain A, Solution Structure Of The C1 Domain Of The Human
          Diacylglycerol Kinase Delta
          Length = 84

 Score = 27.3 bits (59), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 12/62 (19%)

Query: 30 DKVHAANKLASKHQ----RVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIH 85
          D +  A+ +A  HQ     +P+S+      KC +C +T G    LQD    C  C   +H
Sbjct: 16 DIIEDADGIAMPHQWLEGNLPVSA------KCTVCDKTCGSVLRLQD--WRCLWCKAMVH 67

Query: 86 TA 87
          T+
Sbjct: 68 TS 69


>pdb|2D8V|A Chain A, Solution Structure Of The B-Box Domain Of The Zinc
          Finger Fyve Domain-Containing Protein 19 From Mus
          Musculus
          Length = 67

 Score = 27.3 bits (59), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 9/52 (17%)

Query: 48 SSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLL 99
          SS S+ +P C IC E         D  L C  CD  ++ A  +   H  F L
Sbjct: 2  SSGSSGLPWCCICNE---------DATLRCAGCDGDLYCARCFREGHDNFDL 44


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.130    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,904,554
Number of Sequences: 62578
Number of extensions: 206769
Number of successful extensions: 374
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 3
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)