Query 028326
Match_columns 210
No_of_seqs 179 out of 563
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 16:02:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 99.3 3.2E-12 1.1E-16 95.2 6.6 93 2-100 3-100 (101)
2 2dja_A Midline-2; tripartite m 97.0 0.00047 1.6E-08 49.2 3.8 59 39-103 2-62 (84)
3 2yvr_A Transcription intermedi 96.6 0.00083 2.9E-08 43.5 2.0 42 55-102 7-48 (50)
4 3ddt_A E3 ubiquitin-protein li 96.5 0.0016 5.6E-08 41.8 2.7 43 52-100 4-47 (48)
5 2did_A Tripartite motif protei 96.5 0.0024 8.3E-08 41.8 3.5 43 54-103 8-51 (53)
6 2d8u_A Ubiquitin ligase TRIM63 96.3 0.0016 5.3E-08 44.1 2.1 44 54-103 8-52 (64)
7 2yrg_A Tripartite motif-contai 96.0 0.0062 2.1E-07 41.0 3.6 43 54-103 14-57 (59)
8 2csv_A Tripartite motif protei 95.9 0.0045 1.5E-07 43.0 2.6 57 39-103 4-60 (72)
9 2ffw_A Midline-1; B-BOX, ring 95.6 0.0095 3.3E-07 42.4 3.4 44 2-45 30-76 (78)
10 1fre_A Nuclear factor XNF7; zi 95.5 0.0066 2.2E-07 37.7 2.1 31 55-86 4-35 (42)
11 2jun_A Midline-1; B-BOX, TRIM, 94.9 0.019 6.6E-07 41.7 3.6 43 55-97 4-49 (101)
12 2egm_A Tripartite motif-contai 93.9 0.02 6.7E-07 38.3 1.5 33 53-86 17-50 (57)
13 2did_A Tripartite motif protei 87.8 0.53 1.8E-05 30.3 3.5 41 3-50 9-50 (53)
14 2ffw_A Midline-1; B-BOX, ring 87.4 0.4 1.4E-05 33.8 3.0 43 54-96 30-75 (78)
15 2yvr_A Transcription intermedi 84.7 0.93 3.2E-05 28.6 3.4 42 3-50 7-48 (50)
16 2yrg_A Tripartite motif-contai 83.1 1.2 4E-05 29.5 3.5 40 4-50 16-56 (59)
17 2d8v_A Zinc finger FYVE domain 83.0 1.6 5.4E-05 30.5 4.2 49 53-103 7-56 (67)
18 2d8u_A Ubiquitin ligase TRIM63 80.7 1.3 4.5E-05 29.2 3.1 43 3-51 9-52 (64)
19 3ddt_A E3 ubiquitin-protein li 79.4 1.6 5.4E-05 27.4 3.0 37 5-47 9-46 (48)
20 2dja_A Midline-2; tripartite m 79.2 2.2 7.6E-05 29.6 4.1 42 4-51 20-62 (84)
21 2egm_A Tripartite motif-contai 72.9 2.6 8.9E-05 27.6 2.8 30 4-34 20-50 (57)
22 2fc7_A ZZZ3 protein; structure 72.5 5.4 0.00019 28.4 4.6 46 55-100 22-74 (82)
23 1fre_A Nuclear factor XNF7; zi 72.4 1.4 4.7E-05 26.7 1.2 29 4-33 5-34 (42)
24 2d8v_A Zinc finger FYVE domain 66.9 7.3 0.00025 27.1 4.1 46 3-50 9-55 (67)
25 2jne_A Hypothetical protein YF 65.0 2.9 0.0001 31.3 1.8 26 1-30 31-56 (101)
26 4hc9_A Trans-acting T-cell-spe 63.9 5.9 0.0002 30.0 3.5 81 2-83 5-89 (115)
27 1z60_A TFIIH basal transcripti 59.7 3.3 0.00011 28.0 1.2 32 4-35 17-51 (59)
28 1z60_A TFIIH basal transcripti 55.7 2.9 9.8E-05 28.3 0.4 31 57-87 18-51 (59)
29 2csv_A Tripartite motif protei 54.5 8.3 0.00028 26.0 2.6 39 4-49 20-58 (72)
30 1tot_A CREB-binding protein; z 54.0 4.9 0.00017 26.2 1.3 30 2-31 6-37 (52)
31 2fc7_A ZZZ3 protein; structure 51.3 17 0.00058 25.8 3.9 46 2-47 21-73 (82)
32 2xzl_A ATP-dependent helicase 50.3 6.3 0.00021 38.7 2.0 81 2-82 11-106 (802)
33 1mm2_A MI2-beta; PHD, zinc fin 42.5 23 0.00078 23.3 3.3 47 3-63 10-56 (61)
34 1x4s_A Protein FON, zinc finge 42.4 11 0.00036 25.6 1.5 29 4-33 13-45 (59)
35 2jrp_A Putative cytoplasmic pr 41.9 11 0.00038 27.0 1.7 27 1-31 1-27 (81)
36 2e5r_A Dystrobrevin alpha; ZZ 41.3 15 0.00051 24.7 2.2 40 56-95 13-56 (63)
37 1f62_A Transcription factor WS 40.5 21 0.00073 22.3 2.8 27 4-35 2-28 (51)
38 2pv0_B DNA (cytosine-5)-methyl 38.7 25 0.00087 31.9 3.9 72 1-82 49-123 (386)
39 2yqq_A Zinc finger HIT domain- 38.3 15 0.00052 24.5 1.8 29 4-34 14-43 (56)
40 2yql_A PHD finger protein 21A; 37.5 13 0.00046 23.9 1.4 24 3-34 10-33 (56)
41 2lri_C Autoimmune regulator; Z 36.4 59 0.002 21.8 4.6 46 3-62 13-58 (66)
42 1weo_A Cellulose synthase, cat 35.8 12 0.0004 27.6 0.9 30 53-82 15-51 (93)
43 2yqq_A Zinc finger HIT domain- 33.6 27 0.00093 23.2 2.5 24 54-78 12-35 (56)
44 2wjy_A Regulator of nonsense t 33.4 15 0.00052 36.0 1.7 81 2-82 6-101 (800)
45 2dip_A Zinc finger SWIM domain 32.8 30 0.001 25.3 2.8 28 3-30 32-63 (98)
46 2lbm_A Transcriptional regulat 31.8 73 0.0025 24.8 5.1 72 2-82 14-91 (142)
47 3shb_A E3 ubiquitin-protein li 29.4 33 0.0011 23.9 2.4 13 22-34 41-53 (77)
48 2e6r_A Jumonji/ARID domain-con 28.7 24 0.00081 25.3 1.6 28 3-35 17-44 (92)
49 3a1b_A DNA (cytosine-5)-methyl 27.5 81 0.0028 25.2 4.7 72 2-83 36-110 (159)
50 2epr_A POZ-, at HOOK-, and zin 26.8 16 0.00055 21.4 0.4 37 21-61 11-47 (48)
51 1qxf_A GR2, 30S ribosomal prot 26.4 17 0.00058 25.2 0.5 30 1-31 6-35 (66)
52 2olm_A Nucleoporin-like protei 25.2 49 0.0017 25.7 3.0 32 3-35 26-57 (140)
53 2ysm_A Myeloid/lymphoid or mix 25.1 98 0.0034 22.2 4.5 16 72-87 67-82 (111)
54 3u5c_b RP61, YS20, 40S ribosom 24.6 19 0.00066 25.9 0.5 29 1-30 33-61 (82)
55 2ytg_A ZFP-95, zinc finger pro 23.8 29 0.00098 19.8 1.1 27 20-47 10-36 (46)
56 2xzm_6 RPS27E; ribosome, trans 23.3 19 0.00065 25.9 0.2 29 1-30 31-59 (81)
57 3iz6_X 40S ribosomal protein S 23.1 18 0.00062 26.3 0.1 29 1-30 35-63 (86)
58 2kwj_A Zinc finger protein DPF 22.7 31 0.0011 25.4 1.3 16 20-35 71-86 (114)
59 3j20_W 30S ribosomal protein S 22.7 23 0.00078 24.3 0.5 29 1-30 14-42 (63)
60 2csz_A Synaptotagmin-like prot 22.3 28 0.00096 24.6 0.9 30 55-84 26-60 (76)
61 2epz_A Zinc finger protein 28 22.2 19 0.00064 20.7 0.0 26 21-47 11-36 (46)
62 2ct7_A Ring finger protein 31; 21.9 1.3E+02 0.0045 20.7 4.6 19 66-84 43-61 (86)
63 3ql9_A Transcriptional regulat 21.7 1.4E+02 0.0047 22.9 4.9 71 3-82 9-85 (129)
64 2e6s_A E3 ubiquitin-protein li 21.7 65 0.0022 22.3 2.8 14 21-34 40-53 (77)
65 2ytq_A Zinc finger protein 268 21.5 16 0.00054 21.1 -0.4 26 21-47 11-36 (46)
66 2ctu_A Zinc finger protein 483 21.3 78 0.0027 19.4 3.0 41 4-47 20-63 (73)
67 2ea5_A Cell growth regulator w 21.3 80 0.0027 20.8 3.1 28 3-30 16-44 (68)
68 3o36_A Transcription intermedi 21.3 1.1E+02 0.0038 23.9 4.5 47 3-63 5-51 (184)
69 2akl_A PHNA-like protein PA012 21.2 57 0.002 25.5 2.6 30 49-81 22-51 (138)
70 2lvu_A Zinc finger and BTB dom 26.7 20 0.00069 17.6 0.0 22 23-45 3-24 (26)
71 2emf_A Zinc finger protein 484 21.0 17 0.00059 20.9 -0.4 26 21-47 11-36 (46)
72 2epq_A POZ-, at HOOK-, and zin 20.7 14 0.00049 21.2 -0.7 37 20-60 8-44 (45)
73 2elz_A Zinc finger protein 224 20.5 20 0.00068 20.6 -0.1 27 20-47 10-36 (46)
74 2em0_A Zinc finger protein 224 20.4 20 0.00069 20.5 -0.1 26 21-47 11-36 (46)
75 2l5u_A Chromodomain-helicase-D 20.1 1.6E+02 0.0056 19.0 4.4 24 3-34 12-35 (61)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=99.30 E-value=3.2e-12 Score=95.16 Aligned_cols=93 Identities=25% Similarity=0.540 Sum_probs=77.6
Q ss_pred CccccccCC---CCceEEccCCCcccchhhhhhhhhccccccCcccc-cCCCCCCCCCCCCcccCccceEEecCcccccc
Q 028326 2 RIQCNVCEA---AEAKVLCCADEAALCWECDDKVHAANKLASKHQRV-PLSSSSTQMPKCDICQETSGFFFCLQDRALLC 77 (210)
Q Consensus 2 k~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~Rv-pL~~~~~~~~~Cd~C~~~~A~~fC~~D~a~LC 77 (210)
.+.|++|.. .+|+.+|..|.+.||..|...+|..++.+++|.++ |+.+......+|+.|+.++..+||..|..++|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC 82 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC 82 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence 368999984 68999999999999999999999988888999987 55443445678999998899999999999999
Q ss_pred ccccc-cccCCCCCCCCCcceeee
Q 028326 78 RKCDV-AIHTANSYVSAHQRFLLT 100 (210)
Q Consensus 78 ~~Cd~-~~H~aN~~~~~H~R~~l~ 100 (210)
..|.. ..|. .|+..+|.
T Consensus 83 ~~C~~~~~H~------~H~~~~l~ 100 (101)
T 2jun_A 83 ALCKLVGRHR------DHQVAALS 100 (101)
T ss_dssp HHHHHHTTTS------SSCBCCCC
T ss_pred hhcCCCCCcC------CCCeecCC
Confidence 99997 5664 46655553
No 2
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=97.05 E-value=0.00047 Score=49.16 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=45.3
Q ss_pred ccCcccccCCCC-CCCCCCCCcccCccceEEecCccccccccccc-cccCCCCCCCCCcceeeeCcc
Q 028326 39 ASKHQRVPLSSS-STQMPKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLTGVK 103 (210)
Q Consensus 39 a~rH~RvpL~~~-~~~~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~-~~H~aN~~~~~H~R~~l~~~~ 103 (210)
+.+|+.++.... ......|+.|+..+..+||..|..++|..|.. ..| ..|.-.||..+.
T Consensus 2 ~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea~ 62 (84)
T 2dja_A 2 SSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRF 62 (84)
T ss_dssp CCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSSC
T ss_pred CCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHHH
Confidence 467887776442 34456899998888999999999999999998 556 367777777654
No 3
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=96.61 E-value=0.00083 Score=43.47 Aligned_cols=42 Identities=26% Similarity=0.581 Sum_probs=34.7
Q ss_pred CCCCcccCccceEEecCccccccccccccccCCCCCCCCCcceeeeCc
Q 028326 55 PKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGV 102 (210)
Q Consensus 55 ~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~~~H~aN~~~~~H~R~~l~~~ 102 (210)
..|+.|+.++..+||..|..++|..|....|. .|+..+|..+
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ea 48 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLEDA 48 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETTC-
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHHHH
Confidence 35999988889999999999999999987663 6777777654
No 4
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=96.47 E-value=0.0016 Score=41.81 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=33.8
Q ss_pred CCCCCCCcccCccceEEecCccccccccccc-cccCCCCCCCCCcceeee
Q 028326 52 TQMPKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLT 100 (210)
Q Consensus 52 ~~~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~-~~H~aN~~~~~H~R~~l~ 100 (210)
.+...|..|+.++..+||..|..++|..|.. ..|. .|..+||.
T Consensus 4 ~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 47 (48)
T 3ddt_A 4 GSHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ 47 (48)
T ss_dssp TTSCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEECC
T ss_pred ccCCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeCC
Confidence 3456799999888999999999999999985 4664 56666654
No 5
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=96.46 E-value=0.0024 Score=41.77 Aligned_cols=43 Identities=26% Similarity=0.531 Sum_probs=35.3
Q ss_pred CCCCCcccCccceEEecCccccccccccc-cccCCCCCCCCCcceeeeCcc
Q 028326 54 MPKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLTGVK 103 (210)
Q Consensus 54 ~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~-~~H~aN~~~~~H~R~~l~~~~ 103 (210)
..+|+.|+ ++..+||..|..++|..|.. ..| +.|+..||..+.
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea~ 51 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGPS 51 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCTT
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHHh
Confidence 34699998 77999999999999999998 456 478888887653
No 6
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=96.34 E-value=0.0016 Score=44.07 Aligned_cols=44 Identities=27% Similarity=0.446 Sum_probs=35.9
Q ss_pred CCCCCcccCccceEEecCcccccccccccc-ccCCCCCCCCCcceeeeCcc
Q 028326 54 MPKCDICQETSGFFFCLQDRALLCRKCDVA-IHTANSYVSAHQRFLLTGVK 103 (210)
Q Consensus 54 ~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~~-~H~aN~~~~~H~R~~l~~~~ 103 (210)
...|+.|+.++..+||..|..++|..|... .|. .|...||..+.
T Consensus 8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~ 52 (64)
T 2d8u_A 8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVF 52 (64)
T ss_dssp CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCC
T ss_pred CCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHH
Confidence 345999988889999999999999999874 663 67777777544
No 7
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.96 E-value=0.0062 Score=40.99 Aligned_cols=43 Identities=23% Similarity=0.577 Sum_probs=34.7
Q ss_pred CCCCCcccCccceEEecCccccccccccc-cccCCCCCCCCCcceeeeCcc
Q 028326 54 MPKCDICQETSGFFFCLQDRALLCRKCDV-AIHTANSYVSAHQRFLLTGVK 103 (210)
Q Consensus 54 ~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~-~~H~aN~~~~~H~R~~l~~~~ 103 (210)
..+|..|+ ++..+||..|...+|..|.. ..| +.|+..||..+.
T Consensus 14 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea~ 57 (59)
T 2yrg_A 14 VDHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGPS 57 (59)
T ss_dssp SSBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSSC
T ss_pred CccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHHh
Confidence 34699997 57889999999999999998 455 478888887653
No 8
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=95.85 E-value=0.0045 Score=43.00 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=42.0
Q ss_pred ccCcccccCCCCCCCCCCCCcccCccceEEecCccccccccccccccCCCCCCCCCcceeeeCcc
Q 028326 39 ASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVK 103 (210)
Q Consensus 39 a~rH~RvpL~~~~~~~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~~~H~aN~~~~~H~R~~l~~~~ 103 (210)
+.+|+-+.-. .......|+.|. ++..+||..|..++|..|....| +.|...||..+.
T Consensus 4 ~~~H~L~~p~-~~~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~ea~ 60 (72)
T 2csv_A 4 GSSGQLLEPI-RDFEARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEEAK 60 (72)
T ss_dssp SCCCCCCCCS-SSSSCCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHHHH
T ss_pred ccCCcccCCc-cccccCcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHHHH
Confidence 4566665432 223446899995 88999999999999999988666 378878877654
No 9
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=95.56 E-value=0.0095 Score=42.43 Aligned_cols=44 Identities=25% Similarity=0.577 Sum_probs=37.5
Q ss_pred CccccccCC---CCceEEccCCCcccchhhhhhhhhccccccCcccc
Q 028326 2 RIQCNVCEA---AEAKVLCCADEAALCWECDDKVHAANKLASKHQRV 45 (210)
Q Consensus 2 k~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~Rv 45 (210)
.+.|++|.. .+|+..|..+.+.||..|=...|...+.+.+|+-+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 368999985 68999999999999999987779877777888754
No 10
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=95.50 E-value=0.0066 Score=37.69 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=26.4
Q ss_pred CCCCcccCccceEEecCccccccccccc-cccC
Q 028326 55 PKCDICQETSGFFFCLQDRALLCRKCDV-AIHT 86 (210)
Q Consensus 55 ~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~-~~H~ 86 (210)
.+|..|+ ++..+||..|...+|..|.. ..|.
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 3599997 67899999999999999998 4564
No 11
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.95 E-value=0.019 Score=41.67 Aligned_cols=43 Identities=19% Similarity=0.464 Sum_probs=37.0
Q ss_pred CCCCcccC---ccceEEecCccccccccccccccCCCCCCCCCcce
Q 028326 55 PKCDICQE---TSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRF 97 (210)
Q Consensus 55 ~~Cd~C~~---~~A~~fC~~D~a~LC~~Cd~~~H~aN~~~~~H~R~ 97 (210)
..|++|.+ .++..+|..|...+|..|....|..+....+|+++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 45999984 57889999999999999999889888777888876
No 12
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.95 E-value=0.02 Score=38.26 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=27.4
Q ss_pred CCCCCCcccCccceEEecCccccccccccc-cccC
Q 028326 53 QMPKCDICQETSGFFFCLQDRALLCRKCDV-AIHT 86 (210)
Q Consensus 53 ~~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd~-~~H~ 86 (210)
...+|..|+ ++..+||..|...||..|.. ..|.
T Consensus 17 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 17 DQGICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp TTSBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred ccCcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 345799995 77999999999999999997 4553
No 13
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=87.84 E-value=0.53 Score=30.25 Aligned_cols=41 Identities=29% Similarity=0.591 Sum_probs=31.3
Q ss_pred ccccccCCCCceEEccCCCcccchhhhh-hhhhccccccCcccccCCCC
Q 028326 3 IQCNVCEAAEAKVLCCADEAALCWECDD-KVHAANKLASKHQRVPLSSS 50 (210)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~ 50 (210)
..|..-. .+-.+||..|...+|..|-. .-| +.|..+||.++
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea 50 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGP 50 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCT
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHH
Confidence 3565555 57889999999999999985 455 46788888654
No 14
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=87.43 E-value=0.4 Score=33.80 Aligned_cols=43 Identities=19% Similarity=0.445 Sum_probs=35.7
Q ss_pred CCCCCcccC---ccceEEecCccccccccccccccCCCCCCCCCcc
Q 028326 54 MPKCDICQE---TSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 96 (210)
Q Consensus 54 ~~~Cd~C~~---~~A~~fC~~D~a~LC~~Cd~~~H~aN~~~~~H~R 96 (210)
...|++|.. .+|..+|..|.+.+|..|-...|.......+|+-
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 457999975 5788999999999999998877877766777764
No 15
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=84.69 E-value=0.93 Score=28.63 Aligned_cols=42 Identities=24% Similarity=0.498 Sum_probs=31.2
Q ss_pred ccccccCCCCceEEccCCCcccchhhhhhhhhccccccCcccccCCCC
Q 028326 3 IQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSS 50 (210)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~ 50 (210)
..|..-...+-.+||..|...+|..|-..-| +.|..++|.++
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~ea 48 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLEDA 48 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC-
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHHH
Confidence 3466654456789999999999999976555 36888888553
No 16
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.11 E-value=1.2 Score=29.54 Aligned_cols=40 Identities=25% Similarity=0.692 Sum_probs=30.1
Q ss_pred cccccCCCCceEEccCCCcccchhhhh-hhhhccccccCcccccCCCC
Q 028326 4 QCNVCEAAEAKVLCCADEAALCWECDD-KVHAANKLASKHQRVPLSSS 50 (210)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~ 50 (210)
.|..-+ .+-.+||..|...+|..|.. .-| +.|..+||.++
T Consensus 16 ~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea 56 (59)
T 2yrg_A 16 HCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGP 56 (59)
T ss_dssp BCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSS
T ss_pred cChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHH
Confidence 455554 46789999999999999986 445 36777888654
No 17
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=82.95 E-value=1.6 Score=30.51 Aligned_cols=49 Identities=27% Similarity=0.425 Sum_probs=40.3
Q ss_pred CCCCCCcccCccceEEecCc-cccccccccccccCCCCCCCCCcceeeeCcc
Q 028326 53 QMPKCDICQETSGFFFCLQD-RALLCRKCDVAIHTANSYVSAHQRFLLTGVK 103 (210)
Q Consensus 53 ~~~~Cd~C~~~~A~~fC~~D-~a~LC~~Cd~~~H~aN~~~~~H~R~~l~~~~ 103 (210)
+.+-|-+|.+. |.+.|..| .-+.|..|-..+|. ...-+.|+-+++....
T Consensus 7 e~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~~ 56 (67)
T 2d8v_A 7 GLPWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPRR 56 (67)
T ss_dssp CCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCSS
T ss_pred CCCeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCCC
Confidence 35669999887 88999988 67999999999994 5667899999886543
No 18
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=80.68 E-value=1.3 Score=29.19 Aligned_cols=43 Identities=23% Similarity=0.423 Sum_probs=32.5
Q ss_pred ccccccCCCCceEEccCCCcccchhhhh-hhhhccccccCcccccCCCCC
Q 028326 3 IQCNVCEAAEAKVLCCADEAALCWECDD-KVHAANKLASKHQRVPLSSSS 51 (210)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~~ 51 (210)
..|..-...+-.+||..|...+|..|-. .-|. .|..+||.++.
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~ 52 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVF 52 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCC
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHH
Confidence 3466664457789999999999999975 3563 68888987654
No 19
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=79.41 E-value=1.6 Score=27.37 Aligned_cols=37 Identities=24% Similarity=0.521 Sum_probs=26.2
Q ss_pred ccccCCCCceEEccCCCcccchhhh-hhhhhccccccCcccccC
Q 028326 5 CNVCEAAEAKVLCCADEAALCWECD-DKVHAANKLASKHQRVPL 47 (210)
Q Consensus 5 Cd~C~~a~A~vyC~aD~A~LC~~CD-~~vH~aN~la~rH~RvpL 47 (210)
|..=...+-.+||..|...+|..|- ..-|. .|..+||
T Consensus 9 C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l 46 (48)
T 3ddt_A 9 CKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPL 46 (48)
T ss_dssp CSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEEC
T ss_pred CCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeC
Confidence 4433335578999999999999996 34564 4666666
No 20
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=79.24 E-value=2.2 Score=29.60 Aligned_cols=42 Identities=24% Similarity=0.466 Sum_probs=31.6
Q ss_pred cccccCCCCceEEccCCCcccchhhhh-hhhhccccccCcccccCCCCC
Q 028326 4 QCNVCEAAEAKVLCCADEAALCWECDD-KVHAANKLASKHQRVPLSSSS 51 (210)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~~ 51 (210)
.|..-...+-.+||..|...+|..|-. .-| +.|..+||.++.
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea~ 62 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRF 62 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSSC
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHHH
Confidence 455554456889999999999999986 555 368888886653
No 21
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.94 E-value=2.6 Score=27.62 Aligned_cols=30 Identities=30% Similarity=0.706 Sum_probs=23.7
Q ss_pred cccccCCCCceEEccCCCcccchhhhh-hhhh
Q 028326 4 QCNVCEAAEAKVLCCADEAALCWECDD-KVHA 34 (210)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vH~ 34 (210)
.|..-+ .+-.+||..|...+|..|.. .-|.
T Consensus 20 ~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 20 ICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp BCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred cChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 455553 57889999999999999986 5564
No 22
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=72.55 E-value=5.4 Score=28.42 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=32.4
Q ss_pred CCCCcccCccce---EEecCcc----ccccccccccccCCCCCCCCCcceeee
Q 028326 55 PKCDICQETSGF---FFCLQDR----ALLCRKCDVAIHTANSYVSAHQRFLLT 100 (210)
Q Consensus 55 ~~Cd~C~~~~A~---~fC~~D~----a~LC~~Cd~~~H~aN~~~~~H~R~~l~ 100 (210)
..|+.|...+.. +.|..|. .-||..|-...+..+.....|.-.++.
T Consensus 22 ~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~ 74 (82)
T 2fc7_A 22 FKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY 74 (82)
T ss_dssp CCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred CCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEee
Confidence 359999987654 8899987 479999988766544444456555544
No 23
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=72.39 E-value=1.4 Score=26.73 Aligned_cols=29 Identities=28% Similarity=0.592 Sum_probs=22.4
Q ss_pred cccccCCCCceEEccCCCcccchhhhh-hhh
Q 028326 4 QCNVCEAAEAKVLCCADEAALCWECDD-KVH 33 (210)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vH 33 (210)
+|..-+ .+-.+||..|...+|..|-. .-|
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H 34 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKH 34 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence 455554 56789999999999999975 344
No 24
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=66.88 E-value=7.3 Score=27.12 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=37.5
Q ss_pred ccccccCCCCceEEccCC-CcccchhhhhhhhhccccccCcccccCCCC
Q 028326 3 IQCNVCEAAEAKVLCCAD-EAALCWECDDKVHAANKLASKHQRVPLSSS 50 (210)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD-~A~LC~~CD~~vH~aN~la~rH~RvpL~~~ 50 (210)
+-|-.|.. .|++.|..| .-.+|.+|=+..|. ..-.+.|+.+++..+
T Consensus 9 pWC~ICne-DAtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~ 55 (67)
T 2d8v_A 9 PWCCICNE-DATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPR 55 (67)
T ss_dssp SSCTTTCS-CCCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCS
T ss_pred CeeEEeCC-CCeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCC
Confidence 45889986 499999998 55679999999996 456789999998544
No 25
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=64.96 E-value=2.9 Score=31.32 Aligned_cols=26 Identities=23% Similarity=0.649 Sum_probs=13.7
Q ss_pred CCccccccCCCCceEEccCCCcccchhhhh
Q 028326 1 MRIQCNVCEAAEAKVLCCADEAALCWECDD 30 (210)
Q Consensus 1 Mk~~Cd~C~~a~A~vyC~aD~A~LC~~CD~ 30 (210)
|...|-.|+..-- + .+..+.|..|+.
T Consensus 31 M~~~CP~Cq~eL~-~---~g~~~hC~~C~~ 56 (101)
T 2jne_A 31 MELHCPQCQHVLD-Q---DNGHARCRSCGE 56 (101)
T ss_dssp CCCBCSSSCSBEE-E---ETTEEEETTTCC
T ss_pred ccccCccCCCcce-e---cCCEEECccccc
Confidence 5667777774321 1 233444666664
No 26
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=63.86 E-value=5.9 Score=30.02 Aligned_cols=81 Identities=21% Similarity=0.393 Sum_probs=49.3
Q ss_pred CccccccCCCCceEEccCC-Ccccchhhh--hhhhhccccccCcccccCCCCCCCCCCCCcccCccceEEec-Ccccccc
Q 028326 2 RIQCNVCEAAEAKVLCCAD-EAALCWECD--DKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCL-QDRALLC 77 (210)
Q Consensus 2 k~~Cd~C~~a~A~vyC~aD-~A~LC~~CD--~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~~A~~fC~-~D~a~LC 77 (210)
...|..|+.....+|=+.+ ...||..|. .+.|..|....+-.+.. ..+......|..|.......|-. .+...||
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~-~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lC 83 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRL-SAARRAGTSCANCQTTTTTLWRRNANGDPVC 83 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCC-CCCCCTTCCCTTTCCSCCSSCEECTTSCEEC
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccc-cccccccccCCCcCCCCcceeEECCCCCCcc
Confidence 4679999965544444444 458999999 45566554333222211 11223456799998776655542 3336899
Q ss_pred cccccc
Q 028326 78 RKCDVA 83 (210)
Q Consensus 78 ~~Cd~~ 83 (210)
-.|.+.
T Consensus 84 NaCgl~ 89 (115)
T 4hc9_A 84 NACGLY 89 (115)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 999884
No 27
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=59.68 E-value=3.3 Score=28.03 Aligned_cols=32 Identities=25% Similarity=0.599 Sum_probs=25.0
Q ss_pred cccccCCCC---ceEEccCCCcccchhhhhhhhhc
Q 028326 4 QCNVCEAAE---AKVLCCADEAALCWECDDKVHAA 35 (210)
Q Consensus 4 ~Cd~C~~a~---A~vyC~aD~A~LC~~CD~~vH~a 35 (210)
.|-.|...- .++.|..+...+|.+||.-||..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 377777532 24569999999999999999963
No 28
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=55.68 E-value=2.9 Score=28.34 Aligned_cols=31 Identities=29% Similarity=0.725 Sum_probs=23.3
Q ss_pred CCcccCcc---ceEEecCccccccccccccccCC
Q 028326 57 CDICQETS---GFFFCLQDRALLCRKCDVAIHTA 87 (210)
Q Consensus 57 Cd~C~~~~---A~~fC~~D~a~LC~~Cd~~~H~a 87 (210)
|-.|+..- ..+.|..|+...|.+||+-+|..
T Consensus 18 C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 18 CYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp ETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred ccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 55554432 23679999999999999999963
No 29
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=54.51 E-value=8.3 Score=25.98 Aligned_cols=39 Identities=23% Similarity=0.617 Sum_probs=29.1
Q ss_pred cccccCCCCceEEccCCCcccchhhhhhhhhccccccCcccccCCC
Q 028326 4 QCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSS 49 (210)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~ 49 (210)
.|..-+ .+-.+||..|...+|..|-..-| +.|..+||.+
T Consensus 20 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~e 58 (72)
T 2csv_A 20 KCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEE 58 (72)
T ss_dssp BCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHH
T ss_pred cCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHH
Confidence 455553 67889999999999999976555 3577777743
No 30
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=54.03 E-value=4.9 Score=26.22 Aligned_cols=30 Identities=30% Similarity=0.654 Sum_probs=24.0
Q ss_pred CccccccCCC-CceEEccCCCcc-cchhhhhh
Q 028326 2 RIQCNVCEAA-EAKVLCCADEAA-LCWECDDK 31 (210)
Q Consensus 2 k~~Cd~C~~a-~A~vyC~aD~A~-LC~~CD~~ 31 (210)
...|+.|.+. ...+.|..+..+ ||..|=..
T Consensus 6 ~~~Cd~C~~~ig~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 6 VYTCNECKHHVETRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp CEEETTTTEEESSEEEESSSSSCEECHHHHHH
T ss_pred EEECCCCCCCCcceEEcCCCCCchhHHHHHhC
Confidence 4679999964 467999999777 99999654
No 31
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=51.25 E-value=17 Score=25.76 Aligned_cols=46 Identities=22% Similarity=0.509 Sum_probs=29.7
Q ss_pred CccccccCCCC---ceEEccCCCc----ccchhhhhhhhhccccccCcccccC
Q 028326 2 RIQCNVCEAAE---AKVLCCADEA----ALCWECDDKVHAANKLASKHQRVPL 47 (210)
Q Consensus 2 k~~Cd~C~~a~---A~vyC~aD~A----~LC~~CD~~vH~aN~la~rH~RvpL 47 (210)
.+.||.|+..+ -.+.|..|.. -||..|-..-+....-...|.-++|
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i 73 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPI 73 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEE
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEe
Confidence 46899999754 5689999865 5999997653322222234544444
No 32
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=50.34 E-value=6.3 Score=38.71 Aligned_cols=81 Identities=26% Similarity=0.497 Sum_probs=53.4
Q ss_pred CccccccCC--CCceEEccCCCcccchhhhhh--hhhcccc-ccCcccccCCCCC---CCCCCCCcccCccceEEe----
Q 028326 2 RIQCNVCEA--AEAKVLCCADEAALCWECDDK--VHAANKL-ASKHQRVPLSSSS---TQMPKCDICQETSGFFFC---- 69 (210)
Q Consensus 2 k~~Cd~C~~--a~A~vyC~aD~A~LC~~CD~~--vH~aN~l-a~rH~RvpL~~~~---~~~~~Cd~C~~~~A~~fC---- 69 (210)
.+.|.+|+- ...+|.|..|.-.+|-.=... -|=-|-| .+||.-|.|.+-. -....|-.|+....+...
T Consensus 11 ~~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f~lg~~~~ 90 (802)
T 2xzl_A 11 DNSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSA 90 (802)
T ss_dssp -CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTTTEEEEC-
T ss_pred hhhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCceeeeeeeec
Confidence 357999994 478999999999999854422 2333433 4699999886532 235579999998887443
Q ss_pred cCcc--cccccc-ccc
Q 028326 70 LQDR--ALLCRK-CDV 82 (210)
Q Consensus 70 ~~D~--a~LC~~-Cd~ 82 (210)
..+. .+||+. |..
T Consensus 91 ~~~~~~~~~cr~~c~~ 106 (802)
T 2xzl_A 91 KSEAVVVLLCRIPCAQ 106 (802)
T ss_dssp -----CEEEETTTTTT
T ss_pred cCCceEEEEeCCcccc
Confidence 2233 477884 843
No 33
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=42.54 E-value=23 Score=23.35 Aligned_cols=47 Identities=23% Similarity=0.395 Sum_probs=26.7
Q ss_pred ccccccCCCCceEEccCCCcccchhhhhhhhhccccccCcccccCCCCCCCCCCCCcccCc
Q 028326 3 IQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQET 63 (210)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~ 63 (210)
..|.+|+.. ..-.+|..|++..|.. -+ ..||.+.+.....|+.|...
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~fH~~-----Cl-~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 10 EFCRVCKDG--------GELLCCDTCPSSYHIH-----CL-NPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCTTTCCC--------SSCBCCSSSCCCBCSS-----SS-SSCCSSCCSSCCCCTTTTTT
T ss_pred CcCCCCCCC--------CCEEEcCCCCHHHccc-----cc-CCCcCcCCCCccCChhhcCc
Confidence 457888753 4567788899888853 11 12333333334456666543
No 34
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=42.41 E-value=11 Score=25.62 Aligned_cols=29 Identities=31% Similarity=0.671 Sum_probs=24.9
Q ss_pred cccccCC---CCceEEccCCCcccch-hhhhhhh
Q 028326 4 QCNVCEA---AEAKVLCCADEAALCW-ECDDKVH 33 (210)
Q Consensus 4 ~Cd~C~~---a~A~vyC~aD~A~LC~-~CD~~vH 33 (210)
+|.+|.. .+|..-|..+.+..|- .|=+ .|
T Consensus 13 ~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k-~H 45 (59)
T 1x4s_A 13 PCGFCPAGEVQPARYTCPRCNAPYCSLRCYR-TH 45 (59)
T ss_dssp EECSSCTTCCEEECEECTTTCCEESSHHHHH-HH
T ss_pred cCcCCCCCcCCCccccCcCCCCCccChHHHH-HH
Confidence 7999985 7899999999999998 8875 45
No 35
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=41.94 E-value=11 Score=27.03 Aligned_cols=27 Identities=33% Similarity=0.729 Sum_probs=16.6
Q ss_pred CCccccccCCCCceEEccCCCcccchhhhhh
Q 028326 1 MRIQCNVCEAAEAKVLCCADEAALCWECDDK 31 (210)
Q Consensus 1 Mk~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~ 31 (210)
|...|-.|...... ...-+.|..|++.
T Consensus 1 M~~~CP~C~~~l~~----~~~~~~C~~C~~~ 27 (81)
T 2jrp_A 1 MEITCPVCHHALER----NGDTAHCETCAKD 27 (81)
T ss_dssp CCCCCSSSCSCCEE----CSSEEECTTTCCE
T ss_pred CCCCCCCCCCcccc----CCCceECcccccc
Confidence 77888888864332 2334457777653
No 36
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.26 E-value=15 Score=24.74 Aligned_cols=40 Identities=30% Similarity=0.514 Sum_probs=27.3
Q ss_pred CCCcccCccc---eEEecCcc-ccccccccccccCCCCCCCCCc
Q 028326 56 KCDICQETSG---FFFCLQDR-ALLCRKCDVAIHTANSYVSAHQ 95 (210)
Q Consensus 56 ~Cd~C~~~~A---~~fC~~D~-a~LC~~Cd~~~H~aN~~~~~H~ 95 (210)
.|+.|...+. .+.|..|. .-||..|-......+.....|.
T Consensus 13 ~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~ 56 (63)
T 2e5r_A 13 ECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQ 56 (63)
T ss_dssp CCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCC
T ss_pred CCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCC
Confidence 4999987753 37898885 4699999887654443333443
No 37
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=40.54 E-value=21 Score=22.29 Aligned_cols=27 Identities=33% Similarity=0.721 Sum_probs=18.8
Q ss_pred cccccCCCCceEEccCCCcccchhhhhhhhhc
Q 028326 4 QCNVCEAAEAKVLCCADEAALCWECDDKVHAA 35 (210)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vH~a 35 (210)
.|.+|++.. ..+...+|..|++..|..
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~ 28 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLF 28 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHH
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcc
Confidence 588888643 234567788999888863
No 38
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=38.70 E-value=25 Score=31.93 Aligned_cols=72 Identities=21% Similarity=0.363 Sum_probs=47.8
Q ss_pred CCccccccCCCCceEEccC-CCcccchhhhhhhhhccccccCcccccCCCCCCCCCCCCcccCccceEEec--Ccccccc
Q 028326 1 MRIQCNVCEAAEAKVLCCA-DEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCL--QDRALLC 77 (210)
Q Consensus 1 Mk~~Cd~C~~a~A~vyC~a-D~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~~A~~fC~--~D~a~LC 77 (210)
|...|-.|++.. .++..- =...||..|-...+..... ....-....|..|.+-..-+-|. .|....|
T Consensus 49 ~e~~C~~CG~~~-~~~~HPl~~v~lC~~Ck~~y~~~~f~---------~D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC 118 (386)
T 2pv0_B 49 IEDICICCGSLQ-VHTQHPLFEGGICAPCKDKFLDALFL---------YDDDGYQSYCSICCSGETLLICGNPDCTRCYC 118 (386)
T ss_dssp GGGSBTTTCCSC-CCSBCSSBSSBCCHHHHHHHHTTTTC---------BCSSSSBCSCTTTCCCSSCEECCSTTCCCEEC
T ss_pred ccceeCCCCCcC-ccccCCCcCcchhhHHHHHHhccCcc---------cCCCCCcccceEcCCCCeEEEeCCCCCCcchH
Confidence 345788898642 233222 1577899998777765421 11112234699999887778888 8888899
Q ss_pred ccccc
Q 028326 78 RKCDV 82 (210)
Q Consensus 78 ~~Cd~ 82 (210)
..|..
T Consensus 119 ~~Ci~ 123 (386)
T 2pv0_B 119 FECVD 123 (386)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99975
No 39
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.28 E-value=15 Score=24.48 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=24.9
Q ss_pred cccccCCCCceEEccCCCcccch-hhhhhhhh
Q 028326 4 QCNVCEAAEAKVLCCADEAALCW-ECDDKVHA 34 (210)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~-~CD~~vH~ 34 (210)
+|.+|+. ++...|..+.+..|- .|= +.|.
T Consensus 14 ~C~vC~~-~~kY~CPrC~~~yCSl~C~-k~Hk 43 (56)
T 2yqq_A 14 VCVICLE-KPKYRCPACRVPYCSVVCF-RKHK 43 (56)
T ss_dssp CCTTTCS-CCSEECTTTCCEESSHHHH-HHHH
T ss_pred ccCcCcC-CCeeeCCCCCCCeeCHHHH-HHHH
Confidence 5999999 999999999999998 775 4454
No 40
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.51 E-value=13 Score=23.94 Aligned_cols=24 Identities=25% Similarity=0.613 Sum_probs=17.4
Q ss_pred ccccccCCCCceEEccCCCcccchhhhhhhhh
Q 028326 3 IQCNVCEAAEAKVLCCADEAALCWECDDKVHA 34 (210)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vH~ 34 (210)
..|.+|+.. ....+|..|++..|.
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~~H~ 33 (56)
T 2yql_A 10 DFCSVCRKS--------GQLLMCDTCSRVYHL 33 (56)
T ss_dssp CSCSSSCCS--------SCCEECSSSSCEECS
T ss_pred CCCccCCCC--------CeEEEcCCCCcceEC
Confidence 468888864 356677888877775
No 41
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=36.45 E-value=59 Score=21.84 Aligned_cols=46 Identities=20% Similarity=0.417 Sum_probs=26.7
Q ss_pred ccccccCCCCceEEccCCCcccchhhhhhhhhccccccCcccccCCCCCCCCCCCCcccC
Q 028326 3 IQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQE 62 (210)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~ 62 (210)
..|.+|++. ++..+|..|++..|..= .+.||...+.....|+.|..
T Consensus 13 ~~C~vC~~~--------~~ll~Cd~C~~~~H~~C------l~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 13 ARCGVCGDG--------TDVLRCTHCAAAFHWRC------HFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCCTTTSCC--------TTCEECSSSCCEECHHH------HCTTTCCCCSSSCCCTTTTT
T ss_pred CCcCCCCCC--------CeEEECCCCCCceeccc------CCCccCcCCCCCEECccccC
Confidence 468889864 34566777887777531 12344444444455777754
No 42
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=35.77 E-value=12 Score=27.65 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=24.4
Q ss_pred CCCCCCcccCc-------cceEEecCccccccccccc
Q 028326 53 QMPKCDICQET-------SGFFFCLQDRALLCRKCDV 82 (210)
Q Consensus 53 ~~~~Cd~C~~~-------~A~~fC~~D~a~LC~~Cd~ 82 (210)
..+.|.+|.+. ..++-|.+|.-+||+.|-.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE 51 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYE 51 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHH
Confidence 34679999776 3567799999999999976
No 43
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.60 E-value=27 Score=23.23 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=20.8
Q ss_pred CCCCCcccCccceEEecCccccccc
Q 028326 54 MPKCDICQETSGFFFCLQDRALLCR 78 (210)
Q Consensus 54 ~~~Cd~C~~~~A~~fC~~D~a~LC~ 78 (210)
...|.+|.. ++.+.|..|.+..|.
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCCEESS
T ss_pred CCccCcCcC-CCeeeCCCCCCCeeC
Confidence 346999999 999999999998875
No 44
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=33.43 E-value=15 Score=36.02 Aligned_cols=81 Identities=23% Similarity=0.477 Sum_probs=53.4
Q ss_pred CccccccCC--CCceEEccCCCcccchhhhhh--hhhccc-cccCcccccCCCCC---CCCCCCCcccCccceEEe----
Q 028326 2 RIQCNVCEA--AEAKVLCCADEAALCWECDDK--VHAANK-LASKHQRVPLSSSS---TQMPKCDICQETSGFFFC---- 69 (210)
Q Consensus 2 k~~Cd~C~~--a~A~vyC~aD~A~LC~~CD~~--vH~aN~-la~rH~RvpL~~~~---~~~~~Cd~C~~~~A~~fC---- 69 (210)
.+.|.+|+- ...+|.|..|.-++|..-... -|=-|- +.+||.-|.|.+-. -....|-.|+....+...
T Consensus 6 ~~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~~n~f~lg~~~~ 85 (800)
T 2wjy_A 6 IHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA 85 (800)
T ss_dssp TTSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCCCCTTTCEEEC-
T ss_pred chhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCCCceeeeeceec
Confidence 367999994 468999999999999854422 233343 34699889886532 235679999998877433
Q ss_pred cCcc--ccccc-cccc
Q 028326 70 LQDR--ALLCR-KCDV 82 (210)
Q Consensus 70 ~~D~--a~LC~-~Cd~ 82 (210)
..+. ++||+ .|..
T Consensus 86 ~~~~~~~~~~~~~~~~ 101 (800)
T 2wjy_A 86 KADSVVVLLCRQPCAS 101 (800)
T ss_dssp ----CCEECCTTTTSS
T ss_pred ccCceEEEEecCcccc
Confidence 3344 37888 4743
No 45
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=32.76 E-value=30 Score=25.34 Aligned_cols=28 Identities=36% Similarity=0.600 Sum_probs=21.8
Q ss_pred ccccccCCCC---ceEEccCCC-cccchhhhh
Q 028326 3 IQCNVCEAAE---AKVLCCADE-AALCWECDD 30 (210)
Q Consensus 3 ~~Cd~C~~a~---A~vyC~aD~-A~LC~~CD~ 30 (210)
+.||.|...+ ..+.|..|. --||..|-.
T Consensus 32 v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~ 63 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFD 63 (98)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHH
T ss_pred CCCcCCCCCCcccCeEECCCCCCccHHHHHHc
Confidence 6799999643 678898885 459999953
No 46
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=31.77 E-value=73 Score=24.82 Aligned_cols=72 Identities=17% Similarity=0.390 Sum_probs=42.3
Q ss_pred CccccccCCCCc-----eEEccC-CCcccchhhhhhhhhccccccCcccccCCCCCCCCCCCCcccCccceEEecCcccc
Q 028326 2 RIQCNVCEAAEA-----KVLCCA-DEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRAL 75 (210)
Q Consensus 2 k~~Cd~C~~a~A-----~vyC~a-D~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~~A~~fC~~D~a~ 75 (210)
++.|..|+..-. .++..- =...+|..|-...+..+.. .. .-.....|.+|.+--.-+-|..|-..
T Consensus 14 ~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~~~~--------~d-~Dg~~d~C~vC~~GG~LlcCD~Cpr~ 84 (142)
T 2lbm_A 14 IVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDIS--------RD-SDGMDEQCRWCAEGGNLICCDFCHNA 84 (142)
T ss_dssp CCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHSCCC--------BC-TTSCBCSCSSSCCCSSEEECSSSCCE
T ss_pred CCEecCCCCccccccccchhcCCCccccccHHHHHHHhcCCce--------ec-CCCCCCeecccCCCCcEEeCCCCCCe
Confidence 355666664331 233332 2345677776655554211 01 11223579999887777778899998
Q ss_pred ccccccc
Q 028326 76 LCRKCDV 82 (210)
Q Consensus 76 LC~~Cd~ 82 (210)
.|..|-.
T Consensus 85 Fh~~Cl~ 91 (142)
T 2lbm_A 85 FCKKCIL 91 (142)
T ss_dssp EEHHHHH
T ss_pred eeHhhcC
Confidence 9988865
No 47
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=29.36 E-value=33 Score=23.92 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=8.2
Q ss_pred cccchhhhhhhhh
Q 028326 22 AALCWECDDKVHA 34 (210)
Q Consensus 22 A~LC~~CD~~vH~ 34 (210)
..+|..|++..|.
T Consensus 41 ll~CD~C~~~yH~ 53 (77)
T 3shb_A 41 QLMCDECDMAFHI 53 (77)
T ss_dssp EEECTTTCCEEET
T ss_pred eeEeCCCCCccCc
Confidence 4556677766664
No 48
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.71 E-value=24 Score=25.33 Aligned_cols=28 Identities=32% Similarity=0.732 Sum_probs=18.7
Q ss_pred ccccccCCCCceEEccCCCcccchhhhhhhhhc
Q 028326 3 IQCNVCEAAEAKVLCCADEAALCWECDDKVHAA 35 (210)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vH~a 35 (210)
..|.+|+.... .+...+|..|++..|..
T Consensus 17 ~~C~vC~~~~~-----~~~ll~CD~C~~~~H~~ 44 (92)
T 2e6r_A 17 YICQVCSRGDE-----DDKLLFCDGCDDNYHIF 44 (92)
T ss_dssp CCCSSSCCSGG-----GGGCEECTTTCCEECSS
T ss_pred CCCccCCCcCC-----CCCEEEcCCCCchhccc
Confidence 35888886431 24567788999888853
No 49
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=27.47 E-value=81 Score=25.17 Aligned_cols=72 Identities=15% Similarity=0.285 Sum_probs=46.4
Q ss_pred CccccccCCCCceEEccC-CCcccchhhhhhhhhccccccCcccccCCCCCCCCCCCCcccCccceEEec--Cccccccc
Q 028326 2 RIQCNVCEAAEAKVLCCA-DEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCL--QDRALLCR 78 (210)
Q Consensus 2 k~~Cd~C~~a~A~vyC~a-D~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~~A~~fC~--~D~a~LC~ 78 (210)
...|-.|+.. .+++..- =...||..|-...+..... ...--....|.+|.+-...+.|. .|....|.
T Consensus 36 e~~Ct~CG~~-~~~~~HPlf~v~lC~~Ck~~y~e~~f~---------~DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~ 105 (159)
T 3a1b_A 36 EDICISCGSL-NVTLEHPLFVGGMCQNCKNCFLECAYQ---------YDDDGYQSYCTICCGGREVLMCGNNNCCRCFCV 105 (159)
T ss_dssp GGSBTTTCCS-CCCEECSSBSSEECHHHHHHHHHHTTC---------BCTTSSBSSCTTTSCCSEEEECSSTTTCCEEEH
T ss_pred cCcccCCCCc-CccccCCCccchhhHHHHHHHhhcccc---------cCCCCCcceeeEecCCCeEEeeCCCCCCCchhH
Confidence 4578888763 2223322 2667888887777664321 11112234799999888778888 69999999
Q ss_pred ccccc
Q 028326 79 KCDVA 83 (210)
Q Consensus 79 ~Cd~~ 83 (210)
.|...
T Consensus 106 ~CI~~ 110 (159)
T 3a1b_A 106 ECVDL 110 (159)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99753
No 50
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.76 E-value=16 Score=21.43 Aligned_cols=37 Identities=8% Similarity=0.096 Sum_probs=22.9
Q ss_pred CcccchhhhhhhhhccccccCcccccCCCCCCCCCCCCccc
Q 028326 21 EAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQ 61 (210)
Q Consensus 21 ~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~ 61 (210)
..+.|..|++..-.. ..+.+|+|+-..+.+ -.|++|.
T Consensus 11 k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~---~~C~~C~ 47 (48)
T 2epr_A 11 KQVACEICGKIFRDV-YHLNRHKLSHSGEKP---YSSGPSS 47 (48)
T ss_dssp CSEEETTTTEEESSH-HHHHHHGGGSCSCCC---CCSCCCC
T ss_pred cCeeCCCCCcccCCH-HHHHHHHHhcCCCCC---ccCCCCC
Confidence 456788888776553 346788887543322 2466664
No 51
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=26.42 E-value=17 Score=25.16 Aligned_cols=30 Identities=20% Similarity=0.551 Sum_probs=23.3
Q ss_pred CCccccccCCCCceEEccCCCcccchhhhhh
Q 028326 1 MRIQCNVCEAAEAKVLCCADEAALCWECDDK 31 (210)
Q Consensus 1 Mk~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~ 31 (210)
|++.|.-|. +.-+||=.+-...+|..|...
T Consensus 6 m~VKCp~C~-niq~VFShA~tvV~C~~Cg~~ 35 (66)
T 1qxf_A 6 VKVKCPDCE-HEQVIFDHPSTIVKCIICGRT 35 (66)
T ss_dssp EEEECTTTC-CEEEEESSCSSCEECSSSCCE
T ss_pred EEEECCCCC-CceEEEecCceEEEcccCCCE
Confidence 788999999 467778777777888888643
No 52
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=25.17 E-value=49 Score=25.68 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=27.1
Q ss_pred ccccccCCCCceEEccCCCcccchhhhhhhhhc
Q 028326 3 IQCNVCEAAEAKVLCCADEAALCWECDDKVHAA 35 (210)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vH~a 35 (210)
..|--|+.....+-..+=..++|..|- .+|+.
T Consensus 26 ~~CaDCg~~~P~WaS~n~GvfiC~~Cs-giHR~ 57 (140)
T 2olm_A 26 RKCFDCDQRGPTYVNMTVGSFVCTSCS-GSLRG 57 (140)
T ss_dssp GSCTTTCSSCCCEEETTTTEEECHHHH-HHHTT
T ss_pred CcCCCCCCCCCCceeeccCEEEchhcc-chhcc
Confidence 368889988888888888999999997 77874
No 53
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=25.10 E-value=98 Score=22.22 Aligned_cols=16 Identities=38% Similarity=0.835 Sum_probs=11.9
Q ss_pred ccccccccccccccCC
Q 028326 72 DRALLCRKCDVAIHTA 87 (210)
Q Consensus 72 D~a~LC~~Cd~~~H~a 87 (210)
..+++|..|+..-|..
T Consensus 67 ~~ll~Cd~C~~~yH~~ 82 (111)
T 2ysm_A 67 SKMLVCDTCDKGYHTF 82 (111)
T ss_dssp TTEEECSSSCCEEEGG
T ss_pred CCeeECCCCCcHHhHH
Confidence 3578888888887743
No 54
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=24.62 E-value=19 Score=25.90 Aligned_cols=29 Identities=24% Similarity=0.562 Sum_probs=23.6
Q ss_pred CCccccccCCCCceEEccCCCcccchhhhh
Q 028326 1 MRIQCNVCEAAEAKVLCCADEAALCWECDD 30 (210)
Q Consensus 1 Mk~~Cd~C~~a~A~vyC~aD~A~LC~~CD~ 30 (210)
|++.|.-|. +.-+||=.+-...+|..|..
T Consensus 33 m~VkCp~C~-~~q~VFSha~t~V~C~~Cg~ 61 (82)
T 3u5c_b 33 LDVKCPGCL-NITTVFSHAQTAVTCESCST 61 (82)
T ss_dssp EEEECTTSC-SCEEEESBCSSCCCCSSSCC
T ss_pred EEEECCCCC-CeeEEEecCCeEEEccccCC
Confidence 678899998 47788888888888888863
No 55
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.76 E-value=29 Score=19.83 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=18.1
Q ss_pred CCcccchhhhhhhhhccccccCcccccC
Q 028326 20 DEAALCWECDDKVHAANKLASKHQRVPL 47 (210)
Q Consensus 20 D~A~LC~~CD~~vH~aN~la~rH~RvpL 47 (210)
...+-|..|++..-.. ..+.+|+|+-.
T Consensus 10 ~~~~~C~~C~k~f~~~-~~L~~H~~~H~ 36 (46)
T 2ytg_A 10 EKPFKCGECGKSYNQR-VHLTQHQRVHT 36 (46)
T ss_dssp CCSEECTTTCCEESSS-HHHHTTGGGGS
T ss_pred CCCeECCCCCcccCCH-HHHHHHHHHcC
Confidence 3456788888776654 34678887654
No 56
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=23.35 E-value=19 Score=25.87 Aligned_cols=29 Identities=21% Similarity=0.650 Sum_probs=22.4
Q ss_pred CCccccccCCCCceEEccCCCcccchhhhh
Q 028326 1 MRIQCNVCEAAEAKVLCCADEAALCWECDD 30 (210)
Q Consensus 1 Mk~~Cd~C~~a~A~vyC~aD~A~LC~~CD~ 30 (210)
|++.|.-|+ +.-+||=.+-...+|..|..
T Consensus 31 m~VkCp~C~-n~q~VFShA~t~V~C~~Cg~ 59 (81)
T 2xzm_6 31 MDVKCAQCQ-NIQMIFSNAQSTIICEKCSA 59 (81)
T ss_dssp EEEECSSSC-CEEEEETTCSSCEECSSSCC
T ss_pred EEeECCCCC-CeeEEEecCccEEEccCCCC
Confidence 778899998 46777777777777777763
No 57
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.10 E-value=18 Score=26.28 Aligned_cols=29 Identities=21% Similarity=0.564 Sum_probs=23.3
Q ss_pred CCccccccCCCCceEEccCCCcccchhhhh
Q 028326 1 MRIQCNVCEAAEAKVLCCADEAALCWECDD 30 (210)
Q Consensus 1 Mk~~Cd~C~~a~A~vyC~aD~A~LC~~CD~ 30 (210)
|++.|.-|. +.-+||=.+-...+|..|..
T Consensus 35 m~VkCp~C~-~~~~VFShA~t~V~C~~Cgt 63 (86)
T 3iz6_X 35 MDVKCQGCF-NITTVFSHSQTVVVCPGCQT 63 (86)
T ss_dssp EEEECTTTC-CEEEEETTCSSCCCCSSSCC
T ss_pred eEEECCCCC-CeeEEEecCCcEEEccCCCC
Confidence 678899998 47788888888888888863
No 58
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=22.72 E-value=31 Score=25.43 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=11.6
Q ss_pred CCcccchhhhhhhhhc
Q 028326 20 DEAALCWECDDKVHAA 35 (210)
Q Consensus 20 D~A~LC~~CD~~vH~a 35 (210)
....+|..|++..|..
T Consensus 71 ~~ll~Cd~C~~~yH~~ 86 (114)
T 2kwj_A 71 DQLLFCDDCDRGYHMY 86 (114)
T ss_dssp TTEEECSSSCCEEETT
T ss_pred CceEEcCCCCcccccc
Confidence 3566788898888863
No 59
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.67 E-value=23 Score=24.30 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=21.9
Q ss_pred CCccccccCCCCceEEccCCCcccchhhhh
Q 028326 1 MRIQCNVCEAAEAKVLCCADEAALCWECDD 30 (210)
Q Consensus 1 Mk~~Cd~C~~a~A~vyC~aD~A~LC~~CD~ 30 (210)
|++.|.-|.. .-+||=.+-...+|..|..
T Consensus 14 m~VkCp~C~~-~q~VFSha~t~V~C~~Cgt 42 (63)
T 3j20_W 14 LRVKCIDCGN-EQIVFSHPATKVRCLICGA 42 (63)
T ss_dssp EEEECSSSCC-EEEEESSCSSCEECSSSCC
T ss_pred EEEECCCCCC-eeEEEecCCeEEEccCcCC
Confidence 6788999984 6677777777777777763
No 60
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.26 E-value=28 Score=24.64 Aligned_cols=30 Identities=33% Similarity=0.737 Sum_probs=25.3
Q ss_pred CCCCcccCccceEE-----ecCccccccccccccc
Q 028326 55 PKCDICQETSGFFF-----CLQDRALLCRKCDVAI 84 (210)
Q Consensus 55 ~~Cd~C~~~~A~~f-----C~~D~a~LC~~Cd~~~ 84 (210)
-.|..|+..-..++ |..|...+|.+|.+..
T Consensus 26 r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~ 60 (76)
T 2csz_A 26 RTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE 60 (76)
T ss_dssp CBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC
T ss_pred cchhhhCccccccccCCCcCcccChhhcccccccC
Confidence 45999998877765 9999999999999864
No 61
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.19 E-value=19 Score=20.69 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=17.4
Q ss_pred CcccchhhhhhhhhccccccCcccccC
Q 028326 21 EAALCWECDDKVHAANKLASKHQRVPL 47 (210)
Q Consensus 21 ~A~LC~~CD~~vH~aN~la~rH~RvpL 47 (210)
.-+-|..|++..-... .+.+|+|+-.
T Consensus 11 k~~~C~~C~k~f~~~~-~L~~H~~~H~ 36 (46)
T 2epz_A 11 KPFDCIDCGKAFSDHI-GLNQHRRIHT 36 (46)
T ss_dssp CSBCCTTTCCCBSSHH-HHHHHHTTTT
T ss_pred CCeECCCCCceeCCHH-HHHHHHHHhC
Confidence 4577888887766543 4578877644
No 62
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=21.94 E-value=1.3e+02 Score=20.70 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=16.8
Q ss_pred eEEecCccccccccccccc
Q 028326 66 FFFCLQDRALLCRKCDVAI 84 (210)
Q Consensus 66 ~~fC~~D~a~LC~~Cd~~~ 84 (210)
.+.|..|....|..|...-
T Consensus 43 ~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 43 EATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CEECTTTCCEECSSSCSBC
T ss_pred ceEeCCCCCccccccCCch
Confidence 4789999999999999877
No 63
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=21.72 E-value=1.4e+02 Score=22.87 Aligned_cols=71 Identities=17% Similarity=0.428 Sum_probs=44.8
Q ss_pred ccccccCCCC-----ceEEccCC-CcccchhhhhhhhhccccccCcccccCCCCCCCCCCCCcccCccceEEecCccccc
Q 028326 3 IQCNVCEAAE-----AKVLCCAD-EAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALL 76 (210)
Q Consensus 3 ~~Cd~C~~a~-----A~vyC~aD-~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~~A~~fC~~D~a~L 76 (210)
+.|.+|++.. ..++..-- ...+|..|-...+..+.. . +.......|.+|.+--.-+-|..|-...
T Consensus 9 ~~Ct~Cg~~~~~~~~~~~~~HPll~v~~C~~C~~~y~~~~~~--------~-d~Dg~~~~C~vC~dGG~LlcCd~Cpr~F 79 (129)
T 3ql9_A 9 VSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDIS--------R-DSDGMDEQCRWCAEGGNLICCDFCHNAF 79 (129)
T ss_dssp CBCTTTCCBCCCCBTTTEEECTTTCCEEEHHHHHHHHHSCCC--------B-CTTSCBSSCTTTCCCSEEEECSSSSCEE
T ss_pred eEeccCCCCCcccCCCccccCCCcCceeCHhHHhhhhccccc--------c-CCCCCCCcCeecCCCCeeEecCCCchhh
Confidence 4678888543 13444332 567788887666654311 1 1122345699998776667788899999
Q ss_pred cccccc
Q 028326 77 CRKCDV 82 (210)
Q Consensus 77 C~~Cd~ 82 (210)
|..|-.
T Consensus 80 c~~Cl~ 85 (129)
T 3ql9_A 80 CKKCIL 85 (129)
T ss_dssp EHHHHH
T ss_pred hHHHhC
Confidence 999965
No 64
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.71 E-value=65 Score=22.30 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=9.3
Q ss_pred Ccccchhhhhhhhh
Q 028326 21 EAALCWECDDKVHA 34 (210)
Q Consensus 21 ~A~LC~~CD~~vH~ 34 (210)
.-.+|..|++..|.
T Consensus 40 ~ll~CD~C~~~yH~ 53 (77)
T 2e6s_A 40 MQLLCDECNVAYHI 53 (77)
T ss_dssp TEEECSSSCCEEET
T ss_pred CEEEcCCCCccccc
Confidence 45567777777665
No 65
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.48 E-value=16 Score=21.11 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=16.9
Q ss_pred CcccchhhhhhhhhccccccCcccccC
Q 028326 21 EAALCWECDDKVHAANKLASKHQRVPL 47 (210)
Q Consensus 21 ~A~LC~~CD~~vH~aN~la~rH~RvpL 47 (210)
..+.|..|++..-... .+.+|+|+-.
T Consensus 11 k~~~C~~C~k~f~~~~-~L~~H~~~H~ 36 (46)
T 2ytq_A 11 KPYGCSECGKAFSSKS-YLIIHMRTHS 36 (46)
T ss_dssp CSCBCSSSCCBCSCHH-HHHHHHTTTC
T ss_pred CCcCCCccChhhCChH-HHHHHHHHhC
Confidence 4567888887666543 4577877644
No 66
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.31 E-value=78 Score=19.39 Aligned_cols=41 Identities=12% Similarity=0.298 Sum_probs=26.5
Q ss_pred cccccCCCC---ceEEccCCCcccchhhhhhhhhccccccCcccccC
Q 028326 4 QCNVCEAAE---AKVLCCADEAALCWECDDKVHAANKLASKHQRVPL 47 (210)
Q Consensus 4 ~Cd~C~~a~---A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL 47 (210)
.|+.|++.- ..+.= ...+-|..|++..-.. ..+.+|+|+-.
T Consensus 20 ~C~~C~k~f~~~~~l~~--~~~~~C~~C~~~f~~~-~~l~~H~~~H~ 63 (73)
T 2ctu_A 20 KCSKCGIIFIRRSTLSR--RKTPMCEKCRKDSCQE-AALNKDEGNES 63 (73)
T ss_dssp ECSSSCCEEECCCCCCC--SSSCCCHHHHHTCSCC-CSSCCCSSCCC
T ss_pred eCCcccchhCCHHHhCc--CCCCCCCCCChhhcCH-HHHHHHHHhhc
Confidence 588887421 11111 6678899999887664 35688988743
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.28 E-value=80 Score=20.79 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=20.7
Q ss_pred ccccccCCCCceEEccCCCcc-cchhhhh
Q 028326 3 IQCNVCEAAEAKVLCCADEAA-LCWECDD 30 (210)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~-LC~~CD~ 30 (210)
..|-+|-..++.+.-.-+.-. +|..|-.
T Consensus 16 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~ 44 (68)
T 2ea5_A 16 KDCVVCQNGTVNWVLLPCRHTCLCDGCVK 44 (68)
T ss_dssp SCCSSSSSSCCCCEETTTTBCCSCTTHHH
T ss_pred CCCCCcCcCCCCEEEECCCChhhhHHHHh
Confidence 568888877766666666666 8999975
No 68
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=21.26 E-value=1.1e+02 Score=23.92 Aligned_cols=47 Identities=23% Similarity=0.471 Sum_probs=25.6
Q ss_pred ccccccCCCCceEEccCCCcccchhhhhhhhhccccccCcccccCCCCCCCCCCCCcccCc
Q 028326 3 IQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQET 63 (210)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C~~~ 63 (210)
..|.+|+... +..+|..|++..|.. .| ..||...+.....|+.|...
T Consensus 5 ~~C~~C~~~g--------~ll~Cd~C~~~~H~~-----C~-~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 5 DWCAVCQNGG--------ELLCCEKCPKVFHLS-----CH-VPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SSCTTTCCCS--------SCEECSSSSCEECTT-----TS-SSCCSSCCSSCCCCTTTSCS
T ss_pred CccccCCCCC--------eeeecCCCCcccCcc-----cc-CCCCCCCCCCCEECccccCc
Confidence 4688888643 355677777776642 11 11333333334557777544
No 69
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=21.22 E-value=57 Score=25.53 Aligned_cols=30 Identities=20% Similarity=0.624 Sum_probs=21.1
Q ss_pred CCCCCCCCCCcccCccceEEecCcccccccccc
Q 028326 49 SSSTQMPKCDICQETSGFFFCLQDRALLCRKCD 81 (210)
Q Consensus 49 ~~~~~~~~Cd~C~~~~A~~fC~~D~a~LC~~Cd 81 (210)
......|.|+.|+.+-.+- .....+|..|.
T Consensus 22 ~~M~~lP~CP~C~seytYe---Dg~l~vCPeC~ 51 (138)
T 2akl_A 22 HMVSTLPPCPQCNSEYTYE---DGALLVCPECA 51 (138)
T ss_dssp -CCCCSCCCTTTCCCCCEE---CSSSEEETTTT
T ss_pred cccccCCCCCCCCCcceEe---cCCeEECCccc
Confidence 3456679999999874432 34568899996
No 70
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.70 E-value=20 Score=17.64 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=13.9
Q ss_pred ccchhhhhhhhhccccccCcccc
Q 028326 23 ALCWECDDKVHAANKLASKHQRV 45 (210)
Q Consensus 23 ~LC~~CD~~vH~aN~la~rH~Rv 45 (210)
+-|..|++..-... .+.+|+|+
T Consensus 3 ~~C~~C~k~f~~~~-~l~~H~~~ 24 (26)
T 2lvu_A 3 YVCERCGKRFVQSS-QLANHIRH 24 (26)
Confidence 45777877665533 45677764
No 71
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.98 E-value=17 Score=20.94 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=16.9
Q ss_pred CcccchhhhhhhhhccccccCcccccC
Q 028326 21 EAALCWECDDKVHAANKLASKHQRVPL 47 (210)
Q Consensus 21 ~A~LC~~CD~~vH~aN~la~rH~RvpL 47 (210)
..+.|..|++..-.. ..+.+|+|+-.
T Consensus 11 k~~~C~~C~k~F~~~-~~L~~H~~~H~ 36 (46)
T 2emf_A 11 KHFECTECGKAFTRK-STLSMHQKIHT 36 (46)
T ss_dssp CCEECSSSCCEESCH-HHHHHHGGGTS
T ss_pred CCeECCCCCchhCCH-HHHHHHHHHhC
Confidence 456788888766553 34578887654
No 72
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.70 E-value=14 Score=21.18 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=22.7
Q ss_pred CCcccchhhhhhhhhccccccCcccccCCCCCCCCCCCCcc
Q 028326 20 DEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDIC 60 (210)
Q Consensus 20 D~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~~~Cd~C 60 (210)
+..+-|..|++..-... .+.+|+|+-..+.+ -.|++|
T Consensus 8 ~k~~~C~~C~k~f~~~~-~l~~H~~~H~~~~~---~~C~~c 44 (45)
T 2epq_A 8 EKPYSCPVCGLRFKRKD-RMSYHVRSHDGSVG---KSGPSS 44 (45)
T ss_dssp CCSSEETTTTEECSCHH-HHHHHHHHHSCCCC---CCCCCC
T ss_pred CCCCcCCCCCcccCCHH-HHHHHHHHccCCCC---CCCcCC
Confidence 34577888987765543 46788887553322 236655
No 73
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.54 E-value=20 Score=20.64 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=17.3
Q ss_pred CCcccchhhhhhhhhccccccCcccccC
Q 028326 20 DEAALCWECDDKVHAANKLASKHQRVPL 47 (210)
Q Consensus 20 D~A~LC~~CD~~vH~aN~la~rH~RvpL 47 (210)
...+.|..|++..-... .+.+|+|+-.
T Consensus 10 ~k~~~C~~C~k~F~~~~-~L~~H~~~H~ 36 (46)
T 2elz_A 10 EKPYKCEDCGKGYNRRL-NLDMHQRVHM 36 (46)
T ss_dssp CSSCBCSSSCCBCSSHH-HHHHHGGGGG
T ss_pred CCCeeCcccCchhCCHH-HHHHHHHhcC
Confidence 34567888887665533 4577877654
No 74
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=20.43 E-value=20 Score=20.53 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=16.3
Q ss_pred CcccchhhhhhhhhccccccCcccccC
Q 028326 21 EAALCWECDDKVHAANKLASKHQRVPL 47 (210)
Q Consensus 21 ~A~LC~~CD~~vH~aN~la~rH~RvpL 47 (210)
..+-|..|++..-.. ..+.+|+|+-.
T Consensus 11 k~~~C~~C~k~F~~~-~~L~~H~~~H~ 36 (46)
T 2em0_A 11 KTWKCRECDMCFSQA-SSLRLHQNVHV 36 (46)
T ss_dssp CCCCCSSSCCCCSSH-HHHHHHGGGGS
T ss_pred cCeECCCCCcccCCH-HHHHHHHHHcC
Confidence 446677787666553 34567877644
No 75
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=20.10 E-value=1.6e+02 Score=19.00 Aligned_cols=24 Identities=33% Similarity=0.700 Sum_probs=16.0
Q ss_pred ccccccCCCCceEEccCCCcccchhhhhhhhh
Q 028326 3 IQCNVCEAAEAKVLCCADEAALCWECDDKVHA 34 (210)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vH~ 34 (210)
..|.+|+.. ....+|..|++..|.
T Consensus 12 ~~C~vC~~~--------g~ll~CD~C~~~fH~ 35 (61)
T 2l5u_A 12 DYCEVCQQG--------GEIILCDTCPRAYHM 35 (61)
T ss_dssp SSCTTTSCC--------SSEEECSSSSCEEEH
T ss_pred CCCccCCCC--------CcEEECCCCChhhhh
Confidence 468888864 345557778777675
Done!