BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028327
MATTSINMASAKFSMLGWIGGKRELKKKRVISISAQQQAEVEESRSKQVKENENQAQVKQ
QQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLI
LDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKY
NMDARVLNFSMGKPRIMFNNNELPTQDVAQ

High Scoring Gene Products

Symbol, full name Information P value
NdhM
NADH dehydrogenase-like complex M 		protein from Arabidopsis thaliana 1.1e-64

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028327
        (210 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1009023311 - symbol:NdhM "NADH dehydrogenase-l...   659  1.1e-64   1


>TAIR|locus:1009023311 [details] [associations]
            symbol:NdhM "NADH dehydrogenase-like complex M"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0016655 "oxidoreductase activity, acting on
            NAD(P)H, quinone or similar compound as acceptor" evidence=IEA]
            [GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=TAS] [GO:0010258 "NADH
            dehydrogenase complex (plastoquinone) assembly" evidence=IMP]
            [GO:0010598 "NAD(P)H dehydrogenase complex (plastoquinone)"
            evidence=TAS] InterPro:IPR018922 Pfam:PF10664 EMBL:CP002687
            GenomeReviews:CT486007_GR EMBL:AL161592 GO:GO:0048038 EMBL:AL035538
            GO:GO:0016655 GO:GO:0009535 GO:GO:0010598 EMBL:BX829112
            EMBL:AK227138 IPI:IPI00656913 PIR:T05619 RefSeq:NP_001031804.1
            UniGene:At.49770 STRING:Q2V2S7 PaxDb:Q2V2S7 PRIDE:Q2V2S7
            EnsemblPlants:AT4G37925.1 GeneID:3770591 KEGG:ath:AT4G37925
            TAIR:At4g37925 eggNOG:NOG08035 HOGENOM:HOG000070913 OMA:DIEHYIR
            PhylomeDB:Q2V2S7 ProtClustDB:CLSN2681467 Genevestigator:Q2V2S7
            GO:GO:0010258 Uniprot:Q2V2S7
        Length = 217

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 121/177 (68%), Positives = 149/177 (84%)

Query:    27 KKRVISISAQQQAEVEESRSKQVKENENQAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQ 86
             +K  +  + +Q + +E   ++ +KE ++  ++K+Q TPLRPVE Q NV+SK M  ++GGQ
Sbjct:    30 QKAFVVTNPEQDSTLEVQETETLKEEQSTEKMKKQPTPLRPVEKQLNVKSKGMG-DFGGQ 88

Query:    87 WLSCATRHVRIYAAYIDPETWEFDQTQMDKLTLILDPTKEFVWTDESCNKVFAYFQELVD 146
             WLS  TRHVRIYAAYIDPET EFDQ+QMDKLTLILDPT+EFVW DESCNKV++YFQELVD
Sbjct:    89 WLSSVTRHVRIYAAYIDPETCEFDQSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVD 148

Query:   147 HYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFNNNEL 203
             HYEGA LTEYTLRLIGSD+EHYIRK+L+DGEI+YNMDARVLNFSMGKPR+ FN + +
Sbjct:   149 HYEGAPLTEYTLRLIGSDVEHYIRKMLFDGEIQYNMDARVLNFSMGKPRVQFNTSNI 205


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      210       210   0.00080  112 3  11 22  0.38    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  184 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.66u 0.12s 24.78t   Elapsed:  00:00:02
  Total cpu time:  24.66u 0.12s 24.78t   Elapsed:  00:00:02
  Start:  Fri May 10 14:17:49 2013   End:  Fri May 10 14:17:51 2013

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