BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028327
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SPI|A Chain A, Crystal Structure Of Spinach Chloroplast Fructose-1,6-
Bisphosphatase At 2.8 Angstroms Resolution
pdb|1SPI|B Chain B, Crystal Structure Of Spinach Chloroplast Fructose-1,6-
Bisphosphatase At 2.8 Angstroms Resolution
pdb|1SPI|C Chain C, Crystal Structure Of Spinach Chloroplast Fructose-1,6-
Bisphosphatase At 2.8 Angstroms Resolution
pdb|1SPI|D Chain D, Crystal Structure Of Spinach Chloroplast Fructose-1,6-
Bisphosphatase At 2.8 Angstroms Resolution
Length = 358
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 51 ENENQAQVKQQQTPLRPVEPQTNVRSKNMSREYGGQWLSCATRHVRIYAAYIDPETWEF- 109
++E+Q ++Q+ + +P N+ + Y + T +YA +DP EF
Sbjct: 162 DDESQLSAEEQRCVVNVCQPGDNLLAAGYCM-YSSSVIFVLTIGKGVYAFTLDPMYGEFV 220
Query: 110 ---DQTQMDKLTLI--LDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSD 164
++ Q+ K I + +W D K+ Y +L + G Y+ R IGS
Sbjct: 221 LTSEKIQIPKAGKIYSFNEGNYKMWPD----KLKKYMDDLKE--PGESQKPYSSRYIGSL 274
Query: 165 LEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMF 198
+ + R LLY G Y DA+ N GK R+++
Sbjct: 275 VGDFHRTLLYGGIYGYPRDAKSKN---GKLRLLY 305
>pdb|3PHU|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus
pdb|3PHU|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus
Length = 219
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 159 RLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMF 198
RL+G LE Y++++L D E ++A +L MG I++
Sbjct: 82 RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIW 121
>pdb|3PRP|A Chain A, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|C Chain C, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
Length = 178
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 159 RLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMF 198
RL+G LE Y++++L D E ++A +L MG I++
Sbjct: 80 RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIW 119
>pdb|3ZNH|A Chain A, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
Complex With Ubiquitin-propargyl
Length = 183
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 159 RLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFN 199
RL+G LE Y++++L D E ++A +L MG I++
Sbjct: 80 RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWT 120
>pdb|3PHW|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|C Chain C, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|E Chain E, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|G Chain G, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHX|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Isg15
Length = 185
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 159 RLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFN 199
RL+G LE Y++++L D E ++A +L MG I++
Sbjct: 82 RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWT 122
>pdb|3PSE|A Chain A, Structure Of A Viral Otu Domain Protease Bound To
Interferon- Stimulated Gene 15 (Isg15)
Length = 171
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 159 RLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMF 198
RL+G LE Y++++L D E ++A +L MG I++
Sbjct: 82 RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIW 121
>pdb|1GP1|A Chain A, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
pdb|1GP1|B Chain B, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
Length = 198
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 115 DKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLY 174
D L+ DP K W+ N V F++ + +G + Y+ R + D+E I LL
Sbjct: 135 DATALMTDP-KFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSRRFLTIDIEPDIETLLS 193
Query: 175 DG 176
G
Sbjct: 194 QG 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,096,677
Number of Sequences: 62578
Number of extensions: 244488
Number of successful extensions: 578
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 7
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)