Query 028327
Match_columns 210
No_of_seqs 55 out of 57
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 16:03:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dcu_A Fructose-1,6-bisphospha 84.7 2.1 7E-05 38.2 6.7 99 90-197 201-303 (357)
2 2fhy_A Fructose-1,6-bisphospha 56.5 20 0.0007 32.0 6.1 95 92-196 215-314 (374)
3 1ji6_A Pesticidial crystal pro 43.5 13 0.00044 34.6 2.8 44 127-172 35-78 (589)
4 3nrw_A Phage integrase/site-sp 42.4 40 0.0014 22.9 4.5 47 136-186 58-104 (117)
5 2qkg_A Insecticidal delta-endo 39.4 14 0.00048 34.6 2.4 44 127-172 39-82 (589)
6 3zzp_A TS9, ribosomal protein 38.2 43 0.0015 23.6 4.3 31 116-150 47-77 (77)
7 3uks_A Sedoheptulose-1,7 bisph 37.5 18 0.00063 32.4 2.7 40 155-198 250-290 (347)
8 2pnq_A [pyruvate dehydrogenase 34.8 65 0.0022 28.7 5.8 31 165-195 408-441 (467)
9 1dlc_A Delta-endotoxin CRYIIIA 34.6 32 0.0011 31.8 3.9 41 127-170 38-78 (584)
10 1i5p_A Pesticidial crystal pro 33.6 22 0.00076 34.5 2.7 43 127-170 80-122 (633)
11 2rqs_A Parvulin-like peptidyl- 30.1 24 0.00084 24.4 1.8 48 131-179 20-81 (97)
12 1zk6_A Foldase protein PRSA; a 29.3 39 0.0013 23.0 2.7 48 131-179 15-76 (93)
13 3g7n_A Lipase; hydrolase fold, 27.9 32 0.0011 28.2 2.5 60 133-198 106-166 (258)
14 1pq1_B BCL2-like protein 11; B 27.6 19 0.00066 23.1 0.8 13 157-169 11-23 (33)
15 3nrw_A Phage integrase/site-sp 27.5 80 0.0028 21.3 4.1 38 135-176 10-47 (117)
16 2jwk_A Protein TOLR; periplasm 26.1 58 0.002 20.8 3.0 32 115-146 3-41 (74)
17 3mqp_B Phorbol-12-myristate-13 26.0 14 0.00047 22.6 -0.1 15 157-172 10-24 (25)
18 2gq1_A Fructose-1,6-bisphospha 25.3 57 0.002 27.8 3.6 46 139-185 219-264 (332)
19 3kj0_B BCL-2-like protein 11; 24.7 24 0.00082 21.8 0.8 12 157-168 13-24 (27)
20 2jm6_A NOXA; apoptosis, BCL-2, 24.6 36 0.0012 21.0 1.6 16 157-173 10-25 (27)
21 2wh6_B BCL-2-like protein 11; 24.4 19 0.00065 22.1 0.3 10 157-166 11-20 (26)
22 2wtm_A EST1E; hydrolase; 1.60A 23.3 21 0.00073 26.1 0.5 36 154-192 75-110 (251)
23 2kkv_A Integrase; protein stru 23.3 1.7E+02 0.0057 19.3 5.2 43 154-197 68-110 (121)
24 2c9k_A Pesticidal crystal prot 23.1 29 0.00098 32.6 1.4 44 127-170 36-79 (612)
25 3ds8_A LIN2722 protein; unkonw 22.8 12 0.00041 28.7 -1.0 11 160-170 98-108 (254)
26 1jns_A Peptidyl-prolyl CIS-tra 22.1 59 0.002 22.2 2.6 47 132-179 15-74 (92)
27 2lyd_A Decapping protein 1; DC 22.0 1E+02 0.0035 23.8 4.2 34 114-147 80-133 (134)
28 2key_A Putative phage integras 21.8 1.6E+02 0.0055 19.0 4.6 36 151-186 68-103 (112)
29 3doe_B ADP-ribosylation factor 21.1 62 0.0021 26.4 2.9 38 133-174 63-101 (165)
30 3rco_A Tudor domain-containing 21.0 72 0.0024 23.6 3.0 50 133-189 30-80 (89)
31 2kjw_A TS9, 30S ribosomal prot 20.6 1.3E+02 0.0046 22.0 4.4 33 115-151 46-78 (96)
32 1pul_A Hypothetical protein C3 20.4 49 0.0017 25.8 2.1 43 125-178 15-57 (125)
33 3ubt_Y Modification methylase 20.4 36 0.0012 27.3 1.3 58 135-195 88-151 (331)
34 2kkp_A Phage integrase; SAM-li 20.4 99 0.0034 19.9 3.3 47 136-186 57-103 (117)
35 3s6n_M SurviVal motor neuron p 20.3 51 0.0017 21.6 1.8 18 123-140 3-20 (37)
No 1
>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox regulation, thioredoxin, allostery, hydrolase; 2.20A {Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
Probab=84.69 E-value=2.1 Score=38.19 Aligned_cols=99 Identities=22% Similarity=0.356 Sum_probs=62.6
Q ss_pred cccceEEEEEEEecCCCcccCccc----CceeEEecCCCCccccChHHHHHHHHHHHHHHhhccCCCCChhhhhhhccch
Q 028327 90 CATRHVRIYAAYIDPETWEFDQTQ----MDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDL 165 (210)
Q Consensus 90 sTTRHVRIytA~i~~~~lv~~~tq----~~~LTLdlDPDNEF~W~d~~l~kVy~~F~ELVe~y~G~~LteYnLRrIGSDL 165 (210)
++-.-|..|+-.-..++++..... .+.=..-+++-|...|.+. +.++++++.+ .|..=..|++|.|||=.
T Consensus 201 t~g~Gv~~Ftld~~~Gef~lt~~~i~ip~~~~iysin~~n~~~w~~~----~~~yi~~~~~--~~~~~~~y~~RyiGSmV 274 (357)
T 1dcu_A 201 TIGKGVFVFTLDPLYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDEN----LKKYIDDLKE--PGPSGKPYSARYIGSLV 274 (357)
T ss_dssp ESSSCEEEEEEETTTTEEEEEESSCCCCSCCSEEECCGGGGGGSCHH----HHHHHHHHHS--CCTTSCCCEECBCSCHH
T ss_pred EeCCCEEEEEEcCCCCeEEEeCCceeECCCCcEEEECCcchhhcCHH----HHHHHHHHhh--cCCCCCCCcceEecccH
Confidence 344677888743223333322100 0222455677788889743 4455556643 34434679999999999
Q ss_pred HHHHHHHHhcCccccccCCccccccCCCcccc
Q 028327 166 EHYIRKLLYDGEIKYNMDARVLNFSMGKPRIM 197 (210)
Q Consensus 166 EhfIR~LLq~GeisYNl~~RVlNySMGlPrv~ 197 (210)
-.+-|-|++-|-..|--+.|-.| |+=|..
T Consensus 275 ~DvhriL~~GGif~yP~d~~~p~---GKLRll 303 (357)
T 1dcu_A 275 GDFHRTLLYGGIYGYPRDKKSKN---GKLRLL 303 (357)
T ss_dssp HHHHHHHHHCCEEEECCCSSSTT---CSSBTT
T ss_pred HHHHHHHhcCeEEEccccccCCC---cchhhH
Confidence 99999999999888877776333 666643
No 2
>2fhy_A Fructose-1,6-bisphosphatase 1; allosteric inhibitors human fbpase, benzoxazole, intersubunit allosteric inhibition of human fpbase, hydrolase; HET: A37; 2.95A {Homo sapiens}
Probab=56.51 E-value=20 Score=32.01 Aligned_cols=95 Identities=19% Similarity=0.177 Sum_probs=55.1
Q ss_pred cceEEEEEEEecCCCcccCccc----CceeEEecCCCCccccChHHHHHHHHHHHHHHhhccCCCC-ChhhhhhhccchH
Q 028327 92 TRHVRIYAAYIDPETWEFDQTQ----MDKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGALL-TEYTLRLIGSDLE 166 (210)
Q Consensus 92 TRHVRIytA~i~~~~lv~~~tq----~~~LTLdlDPDNEF~W~d~~l~kVy~~F~ELVe~y~G~~L-teYnLRrIGSDLE 166 (210)
-.-|..|+..-..++++..... .+.-..-++.-|-..|++. +.++.+++ ..|..= ..|++|.|||=.-
T Consensus 215 G~Gv~~Ftld~~~G~f~L~~~~i~ip~~~~i~sin~~n~~~w~~~----~~~yi~~~---~~~~~~~k~~~~Ry~GSmV~ 287 (374)
T 2fhy_A 215 DCGVNCFMLDPAIGEFILVDKDVKIKKKGKIYSLNEGYAKDFDPA----VTEYIQRK---KFPPDNSAPYGARYVGSMVA 287 (374)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEECCCSSCSEEECCGGGGGGCCHH----HHHHHHHH---HSCTTSCCCCEECBCSCHHH
T ss_pred CCceeEEEEcCCCCeEEecCCccccCCCCcEEEeChhhhhccCHH----HHHHHHHh---hhccccccccceeEechhHH
Confidence 3557777765444444333200 0111233444555568632 33445555 234321 3799999999999
Q ss_pred HHHHHHHhcCccccccCCccccccCCCccc
Q 028327 167 HYIRKLLYDGEIKYNMDARVLNFSMGKPRI 196 (210)
Q Consensus 167 hfIR~LLq~GeisYNl~~RVlNySMGlPrv 196 (210)
.+.|-|+.-|-..|--+.|-.+ |+=|+
T Consensus 288 D~hrvL~~GGif~yP~D~~~~~---GKLRl 314 (374)
T 2fhy_A 288 DVHRTLVYGGIFLYPANKKSPN---GKLRL 314 (374)
T ss_dssp HHHHHHHHCCEEEECCCSSCTT---CSEET
T ss_pred HHHHHHhcCcEEEccccccCcC---Ccchh
Confidence 9999999888888766665444 55443
No 3
>1ji6_A Pesticidial crystal protein CRY3BB; toxin; 2.40A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=43.48 E-value=13 Score=34.57 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=37.8
Q ss_pred cccChHHHHHHHHHHHHHHhhccCCCCChhhhhhhccchHHHHHHH
Q 028327 127 FVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKL 172 (210)
Q Consensus 127 F~W~d~~l~kVy~~F~ELVe~y~G~~LteYnLRrIGSDLEhfIR~L 172 (210)
++|.+. +.+++.|.+.||..-.+.+++|......++|+++-..+
T Consensus 35 ~lwP~~--~~~w~~~~~~ve~LIdqkI~~~~~~~a~~~l~gL~~~~ 78 (589)
T 1ji6_A 35 TIWPSD--ADPWKAFMAQVEVLIDKKIEEYAKSKALAELQGLQNNF 78 (589)
T ss_dssp HTSCTT--CHHHHHHHHHTHHHHTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568876 88999999999999999999999999999988755443
No 4
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=42.36 E-value=40 Score=22.90 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhccCCCCChhhhhhhccchHHHHHHHHhcCccccccCCcc
Q 028327 136 KVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARV 186 (210)
Q Consensus 136 kVy~~F~ELVe~y~G~~LteYnLRrIGSDLEhfIR~LLq~GeisYNl~~RV 186 (210)
.|.++...|.+ ..++.=+++++=+-|-.|.+-|...|-|..||-..|
T Consensus 58 ~i~~y~~~l~~----~~~s~~Ti~~~ls~lr~f~~~l~~~g~i~~nP~~~v 104 (117)
T 3nrw_A 58 KLDEYETFRRG----SDVSPATLNGEMQTLKNWLEYLARIDVVDEDLPEKV 104 (117)
T ss_dssp HHHHHHHHHHT----SSCCHHHHHHHHHHHHHHHHHHHHTTSSCTTSGGGC
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHc
Confidence 34455555543 568888999999999999999999999999997765
No 5
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis} PDB: 3eb7_A
Probab=39.37 E-value=14 Score=34.57 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=38.5
Q ss_pred cccChHHHHHHHHHHHHHHhhccCCCCChhhhhhhccchHHHHHHH
Q 028327 127 FVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKL 172 (210)
Q Consensus 127 F~W~d~~l~kVy~~F~ELVe~y~G~~LteYnLRrIGSDLEhfIR~L 172 (210)
|+|.... .+++.|.+.||..-.+.+++|.+....++|++.-..|
T Consensus 39 ~lWP~~~--~~We~~~~~VE~LIdqkI~~~~~n~a~a~L~GL~~~l 82 (589)
T 2qkg_A 39 VLWPGGK--SQWEIFMEQVEALINQKIAEYARAKALAELEGLGNNY 82 (589)
T ss_dssp HHCCSSS--CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6787666 7999999999999999999999999999999875544
No 6
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=38.24 E-value=43 Score=23.58 Aligned_cols=31 Identities=13% Similarity=0.357 Sum_probs=26.2
Q ss_pred eeEEecCCCCccccChHHHHHHHHHHHHHHhhccC
Q 028327 116 KLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEG 150 (210)
Q Consensus 116 ~LTLdlDPDNEF~W~d~~l~kVy~~F~ELVe~y~G 150 (210)
.+.+.|+||= +|+.++.+-.+|+.++....|
T Consensus 47 E~m~Il~P~l----~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 47 EVNIVLNPNL----DQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp EEEEEECTTC----CHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEECCCC----CHHHHHHHHHHHHHHHHhcCC
Confidence 4678889983 689999999999999988655
No 7
>3uks_A Sedoheptulose-1,7 bisphosphatase, putative; structural genomics, center for structural genomics of infec diseases, csgid; 1.85A {Toxoplasma gondii}
Probab=37.51 E-value=18 Score=32.40 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=30.8
Q ss_pred hhhhhhhccchHHHHHHHHhc-CccccccCCccccccCCCccccc
Q 028327 155 EYTLRLIGSDLEHYIRKLLYD-GEIKYNMDARVLNFSMGKPRIMF 198 (210)
Q Consensus 155 eYnLRrIGSDLEhfIR~LLq~-GeisYNl~~RVlNySMGlPrv~~ 198 (210)
.||+|.|||=.-.+=|-|++- |--.|--+.+ +-|+=|..+
T Consensus 250 ~y~~RYiGsmVaDvHR~L~~GgGIF~YP~~~~----~~GKLRLlY 290 (347)
T 3uks_A 250 RYTLRYTGGLVPDVYQIFVKQQGVFCNPASKA----APAKLRMCF 290 (347)
T ss_dssp TCEECBCSCHHHHHHHHHHHTCCEEEECCCSS----SCCCCBTTT
T ss_pred CCCceecccccchHHHHHhhcCeEEEccCCCC----CCCcEEEEe
Confidence 699999999999999999997 7666655433 337766544
No 8
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Probab=34.77 E-value=65 Score=28.66 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=8.1
Q ss_pred hHHHHHHHHhc---CccccccCCccccccCCCcc
Q 028327 165 LEHYIRKLLYD---GEIKYNMDARVLNFSMGKPR 195 (210)
Q Consensus 165 LEhfIR~LLq~---GeisYNl~~RVlNySMGlPr 195 (210)
-.|.||.-|.. ||+.|..=+..|....|.-|
T Consensus 408 A~~Lir~Al~~~~~Ge~~~~~~~~ll~~~~~~~R 441 (467)
T 2pnq_A 408 ATHLIRHAVGNNEFGAVDHERLSKMLSLPEELAR 441 (467)
T ss_dssp HHHHHHHHHC------------------------
T ss_pred HHHHHHHHhcCCCcCcchHHHHHhhhcCCccccc
Confidence 47889988877 57888776777777766655
No 9
>1dlc_A Delta-endotoxin CRYIIIA; 2.50A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=34.65 E-value=32 Score=31.83 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=35.8
Q ss_pred cccChHHHHHHHHHHHHHHhhccCCCCChhhhhhhccchHHHHH
Q 028327 127 FVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIR 170 (210)
Q Consensus 127 F~W~d~~l~kVy~~F~ELVe~y~G~~LteYnLRrIGSDLEhfIR 170 (210)
++|++. .+++.|.+.||..-.+.+++|......++|++.-.
T Consensus 38 ~lwP~~---~~w~~~~~~ve~LIdqkI~~~~~~~a~~~l~gL~~ 78 (584)
T 1dlc_A 38 TIWPSE---DPWKAFMEQVEALMDQKIADYAKNKALAELQGLQN 78 (584)
T ss_dssp HTSSSH---HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578875 89999999999999999999999999999986433
No 10
>1i5p_A Pesticidial crystal protein CRY2AA; helical bundle, beta prism, lectin-like beta sandwich, jelly roll, toxin; 2.20A {Bacillus thuringiensis serovarkurstaki} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=33.63 E-value=22 Score=34.51 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=36.4
Q ss_pred cccChHHHHHHHHHHHHHHhhccCCCCChhhhhhhccchHHHHH
Q 028327 127 FVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIR 170 (210)
Q Consensus 127 F~W~d~~l~kVy~~F~ELVe~y~G~~LteYnLRrIGSDLEhfIR 170 (210)
|+|.+.. +.|++.|.+-||..-.+.+++|.+.++.++|+++-.
T Consensus 80 iLWPsn~-qdVWeefmeqVEqLIDQKIse~vrN~AiAeLqGLqn 122 (633)
T 1i5p_A 80 IIFPSGS-TNLMQDILRETEQFLNQRLNTDTLARVNAELIGLQA 122 (633)
T ss_dssp HHSGGGC-CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677654 578999999999999999999999999999887544
No 11
>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum}
Probab=30.15 E-value=24 Score=24.45 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=32.6
Q ss_pred hHHHHHHHHH------HHHHHhhcc--------CCCCChhhhhhhccchHHHHHHHHhcCccc
Q 028327 131 DESCNKVFAY------FQELVDHYE--------GALLTEYTLRLIGSDLEHYIRKLLYDGEIK 179 (210)
Q Consensus 131 d~~l~kVy~~------F~ELVe~y~--------G~~LteYnLRrIGSDLEhfIR~LLq~Geis 179 (210)
.+..++++.+ |.+|...|+ |.+|--.....+..+++.-+.. |..|+||
T Consensus 20 ~~~A~~i~~~l~~g~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~~~f~~a~~~-l~~G~is 81 (97)
T 2rqs_A 20 QGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFR-LQVGEVS 81 (97)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHTCCCCGGGGGTTEEEEECTTSSCHHHHHHHTT-CTTSCBC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHhCCCCcchhcCceeeeEcCCCCCHHHHHHHHc-CCCCCcc
Confidence 5666777765 999998887 3455555555566666666666 4678876
No 12
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}
Probab=29.26 E-value=39 Score=22.97 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=33.9
Q ss_pred hHHHHHHHHH------HHHHHhhcc-------CCCCChhh-hhhhccchHHHHHHHHhcCccc
Q 028327 131 DESCNKVFAY------FQELVDHYE-------GALLTEYT-LRLIGSDLEHYIRKLLYDGEIK 179 (210)
Q Consensus 131 d~~l~kVy~~------F~ELVe~y~-------G~~LteYn-LRrIGSDLEhfIR~LLq~Geis 179 (210)
.+..++++.+ |.+|...|+ |.+|.... .-.+..+++.-+..| ..|+||
T Consensus 15 ~~~A~~i~~~l~~g~~F~~lA~~~S~~~s~~~gG~lg~~~~~~~l~~~f~~a~~~l-~~G~is 76 (93)
T 1zk6_A 15 KKTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKL-KTGEVS 76 (93)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHCCSGGGGGTTEEEEECTTTSSCTTHHHHHHHS-CTTCBC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHhCCCchhhhCCeeeeecccccCCHHHHHHHHcC-CCCCcc
Confidence 4566666665 999988775 44555555 666777888888775 789887
No 13
>3g7n_A Lipase; hydrolase fold, hydrolase; HET: 1PE; 1.30A {Penicillium expansum}
Probab=27.95 E-value=32 Score=28.19 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhhhhhccchHHHHHHHHhcCcccc-ccCCccccccCCCccccc
Q 028327 133 SCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKY-NMDARVLNFSMGKPRIMF 198 (210)
Q Consensus 133 ~l~kVy~~F~ELVe~y~G~~LteYnLRrIGSDLEhfIR~LLq~GeisY-Nl~~RVlNySMGlPrv~~ 198 (210)
....|....+++++.|. +|.|-..|--|-+-+-.|+-. ++.. .++.+|.-|.+|-|||..
T Consensus 106 ~~~~~~~~l~~~~~~~p-----~~~i~vtGHSLGGalA~l~a~-~l~~~~~~~~v~~~tFg~PrvGn 166 (258)
T 3g7n_A 106 VHDTIITEVKALIAKYP-----DYTLEAVGHSLGGALTSIAHV-ALAQNFPDKSLVSNALNAFPIGN 166 (258)
T ss_dssp HHHHHHHHHHHHHHHST-----TCEEEEEEETHHHHHHHHHHH-HHHHHCTTSCEEEEEESCCCCBC
T ss_pred HHHHHHHHHHHHHHhCC-----CCeEEEeccCHHHHHHHHHHH-HHHHhCCCCceeEEEecCCCCCC
Confidence 34456677777887774 477888888888877666432 2222 345677789999999853
No 14
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=27.59 E-value=19 Score=23.11 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=10.3
Q ss_pred hhhhhccchHHHH
Q 028327 157 TLRLIGSDLEHYI 169 (210)
Q Consensus 157 nLRrIGSDLEhfI 169 (210)
.|||||.|.-.|-
T Consensus 11 ELRRIGDeFNa~y 23 (33)
T 1pq1_B 11 ELRRIGDEFNETY 23 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHhhccc
Confidence 5899999987653
No 15
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=27.47 E-value=80 Score=21.31 Aligned_cols=38 Identities=5% Similarity=0.057 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhccCCCCChhhhhhhccchHHHHHHHHhcC
Q 028327 135 NKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDG 176 (210)
Q Consensus 135 ~kVy~~F~ELVe~y~G~~LteYnLRrIGSDLEhfIR~LLq~G 176 (210)
+...+.|-+-. . ..+++-|++...+||..|++-|-..|
T Consensus 10 ~~~~~~fl~~l---~-~~~s~~Ti~~Y~~~l~~f~~~l~~~~ 47 (117)
T 3nrw_A 10 REARDRYLAHR---Q-TDAADASIKSFRYRLKHFVEWAEERD 47 (117)
T ss_dssp HHHHHHHHHHH---T-TTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH---H-cCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444454433 3 67889999999999999998876655
No 16
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=26.05 E-value=58 Score=20.80 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=22.2
Q ss_pred ceeEEecCCCCccccC--h---H--HHHHHHHHHHHHHh
Q 028327 115 DKLTLILDPTKEFVWT--D---E--SCNKVFAYFQELVD 146 (210)
Q Consensus 115 ~~LTLdlDPDNEF~W~--d---~--~l~kVy~~F~ELVe 146 (210)
..+++.||.|.++.|+ + . .++.+-.++.++..
T Consensus 3 ~~i~v~I~~dG~~~~~~~~~~~~~v~~~~L~~~l~~~~~ 41 (74)
T 2jwk_A 3 VPVILEVAGIGKYAISIGGERQEGLTEEMVTQLSRQEFD 41 (74)
T ss_dssp SCEEEEECSSSCEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred CCEEEEEecCccEEEecCCCcCcccCHHHHHHHHHHHHh
Confidence 4689999999999999 6 3 23455555555544
No 17
>3mqp_B Phorbol-12-myristate-13-acetate-induced protein 1; BCL-2 family, structural genomics, PSI-2, protein structure initiative; 2.24A {Homo sapiens} PDB: 2nla_B
Probab=26.03 E-value=14 Score=22.56 Aligned_cols=15 Identities=40% Similarity=0.705 Sum_probs=9.0
Q ss_pred hhhhhccchHHHHHHH
Q 028327 157 TLRLIGSDLEHYIRKL 172 (210)
Q Consensus 157 nLRrIGSDLEhfIR~L 172 (210)
.|||||.-| .|-.+|
T Consensus 10 qlrr~gdkl-n~rqkl 24 (25)
T 3mqp_B 10 QLRRFGDKL-NFRQKL 24 (26)
T ss_dssp HHHHHHHHH-HHHHCC
T ss_pred HHHHHhHHH-HHHHhh
Confidence 589999544 444443
No 18
>2gq1_A Fructose-1,6-bisphosphatase; allosteric activator site, quaternary conformation, hydrolas; 1.45A {Escherichia coli} PDB: 2owz_A* 2ox3_A* 2q8m_A* 2qvr_A*
Probab=25.34 E-value=57 Score=27.82 Aligned_cols=46 Identities=28% Similarity=0.348 Sum_probs=31.2
Q ss_pred HHHHHHHhhccCCCCChhhhhhhccchHHHHHHHHhcCccccccCCc
Q 028327 139 AYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDAR 185 (210)
Q Consensus 139 ~~F~ELVe~y~G~~LteYnLRrIGSDLEhfIR~LLq~GeisYNl~~R 185 (210)
+++++|.. ..|..-..|++|++||..-.+-|-|+..|-.-|--+.|
T Consensus 219 ~~i~~l~~-~~~~~~~~~~~R~~GS~a~dl~~v~~~gG~~~~~~d~~ 264 (332)
T 2gq1_A 219 KYIKFCQE-EDKSTNRPYTSRYIGSLVADFHRNLLKGGIYLYPSTAS 264 (332)
T ss_dssp HHHHHHTS-CBGGGTBSCEECCCSCHHHHHHHHHHHCCEEEECCCSS
T ss_pred HHHHHHHh-hccccCCcCCEEEeHhHHHHHHHHHHhCCEEEEEeecc
Confidence 45555521 12222246999999999999999998878777655443
No 19
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=24.72 E-value=24 Score=21.81 Aligned_cols=12 Identities=42% Similarity=0.836 Sum_probs=9.1
Q ss_pred hhhhhccchHHH
Q 028327 157 TLRLIGSDLEHY 168 (210)
Q Consensus 157 nLRrIGSDLEhf 168 (210)
.|||||.|.-.+
T Consensus 13 ELRRIGDeFN~~ 24 (27)
T 3kj0_B 13 ELRRIGDEFNAY 24 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 589999886543
No 20
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=24.62 E-value=36 Score=21.02 Aligned_cols=16 Identities=44% Similarity=0.524 Sum_probs=11.1
Q ss_pred hhhhhccchHHHHHHHH
Q 028327 157 TLRLIGSDLEHYIRKLL 173 (210)
Q Consensus 157 nLRrIGSDLEhfIR~LL 173 (210)
.||+||. .-.|-.+||
T Consensus 10 qlr~~gd-kln~rqkll 25 (27)
T 2jm6_A 10 QLRRIGD-KVNLRQKLL 25 (27)
T ss_dssp HHHHHHH-HHHHHHHHH
T ss_pred HHHHHhH-HHHHHHHHh
Confidence 5899994 445666665
No 21
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=24.42 E-value=19 Score=22.12 Aligned_cols=10 Identities=40% Similarity=0.770 Sum_probs=8.0
Q ss_pred hhhhhccchH
Q 028327 157 TLRLIGSDLE 166 (210)
Q Consensus 157 nLRrIGSDLE 166 (210)
.|||||.|.-
T Consensus 11 ELRRIGDeFN 20 (26)
T 2wh6_B 11 ELRRIGDEFN 20 (26)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHhHHHh
Confidence 5899998764
No 22
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Probab=23.31 E-value=21 Score=26.09 Aligned_cols=36 Identities=14% Similarity=-0.011 Sum_probs=25.9
Q ss_pred ChhhhhhhccchHHHHHHHHhcCccccccCCccccccCC
Q 028327 154 TEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMG 192 (210)
Q Consensus 154 teYnLRrIGSDLEhfIR~LLq~GeisYNl~~RVlNySMG 192 (210)
.+|++...-.|++.+|..|.+.+.+. ..-++-+|||
T Consensus 75 ~~~~~~~~~~d~~~~~~~l~~~~~~~---~~~lvGhS~G 110 (251)
T 2wtm_A 75 EDHTLFKWLTNILAVVDYAKKLDFVT---DIYMAGHSQG 110 (251)
T ss_dssp GGCCHHHHHHHHHHHHHHHTTCTTEE---EEEEEEETHH
T ss_pred ccCCHHHHHHHHHHHHHHHHcCcccc---eEEEEEECcc
Confidence 45777777888888888886554342 4567888888
No 23
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=23.27 E-value=1.7e+02 Score=19.34 Aligned_cols=43 Identities=7% Similarity=0.090 Sum_probs=33.0
Q ss_pred ChhhhhhhccchHHHHHHHHhcCccccccCCccccccCCCcccc
Q 028327 154 TEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIM 197 (210)
Q Consensus 154 teYnLRrIGSDLEhfIR~LLq~GeisYNl~~RVlNySMGlPrv~ 197 (210)
+.=+++++=+-|-.+++-....|-|..||-..|-. .++.|++.
T Consensus 68 s~~t~~~~~~~l~~~~~~A~~~~~i~~NP~~~v~~-~~~~~~~~ 110 (121)
T 2kkv_A 68 KHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAG-ALSTTKAR 110 (121)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTSSCSCSCSSSSC-CCSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcccCcHHHHHH-hcCCCCCC
Confidence 55678888888999999999999999999766543 34555543
No 24
>2c9k_A Pesticidal crystal protein CRY4AA; toxin, insect toxin, bioinsecticicide, pore formation, receptor recognition, sporulation; 2.8A {Bacillus thuringiensis}
Probab=23.07 E-value=29 Score=32.56 Aligned_cols=44 Identities=5% Similarity=0.050 Sum_probs=36.2
Q ss_pred cccChHHHHHHHHHHHHHHhhccCCCCChhhhhhhccchHHHHH
Q 028327 127 FVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIR 170 (210)
Q Consensus 127 F~W~d~~l~kVy~~F~ELVe~y~G~~LteYnLRrIGSDLEhfIR 170 (210)
++|....=+.+++.|.+.||..-.+.+++|.+....++|+++-.
T Consensus 36 ~lwP~~~~~~~w~~~~~~Ve~LIdqkI~~~~~~~a~~~L~gL~~ 79 (612)
T 2c9k_A 36 VLFPAQDQSNTWSDFITQTKNIIKKEIASTYISNANKILNRSFN 79 (612)
T ss_dssp HHCTTGGGCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHH
T ss_pred HhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45775322579999999999999999999999999999987544
No 25
>3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua}
Probab=22.84 E-value=12 Score=28.74 Aligned_cols=11 Identities=9% Similarity=-0.076 Sum_probs=6.5
Q ss_pred hhccchHHHHH
Q 028327 160 LIGSDLEHYIR 170 (210)
Q Consensus 160 rIGSDLEhfIR 170 (210)
.||-.+-+.|-
T Consensus 98 lvGHS~Gg~ia 108 (254)
T 3ds8_A 98 GVGHSNGGLAL 108 (254)
T ss_dssp EEEETHHHHHH
T ss_pred EEEECccHHHH
Confidence 46666666553
No 26
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A
Probab=22.12 E-value=59 Score=22.15 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=29.5
Q ss_pred HHHHHHHHH------HHHHHhhcc-------CCCCChhhhhhhccchHHHHHHHHhcCccc
Q 028327 132 ESCNKVFAY------FQELVDHYE-------GALLTEYTLRLIGSDLEHYIRKLLYDGEIK 179 (210)
Q Consensus 132 ~~l~kVy~~------F~ELVe~y~-------G~~LteYnLRrIGSDLEhfIR~LLq~Geis 179 (210)
+..++++.+ |.+|...|+ |.+|--...-.+..+++.-+.+| ..|+|+
T Consensus 15 ~~A~~i~~~l~~g~~F~~lA~~~S~~~s~~~gGdlg~~~~~~l~~~f~~a~~~l-~~G~is 74 (92)
T 1jns_A 15 KLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSC-PVLEPT 74 (92)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHHHHS-CTTCCE
T ss_pred HHHHHHHHHHHCCCCHHHHHHHhCCCcchhcCCeeeEEcCcccCHHHHHHHHhC-CCCCcC
Confidence 345555554 889998885 33444444444556667767665 678886
No 27
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=21.97 E-value=1e+02 Score=23.79 Aligned_cols=34 Identities=12% Similarity=0.341 Sum_probs=26.1
Q ss_pred CceeEEecCCCCcc--------------------ccChHHHHHHHHHHHHHHhh
Q 028327 114 MDKLTLILDPTKEF--------------------VWTDESCNKVFAYFQELVDH 147 (210)
Q Consensus 114 ~~~LTLdlDPDNEF--------------------~W~d~~l~kVy~~F~ELVe~ 147 (210)
++-+..+|.|+.+| .-+++.|++|+..+.+||++
T Consensus 80 ~~n~~~~l~~~~~~e~~~~~li~r~~~~~I~GiWf~~~~d~~~i~~~l~~l~~~ 133 (134)
T 2lyd_A 80 TTSFVEPITGSLELQSQPPFLLYRNERSRIRGFWFYNSEECDRISGLVNGLLKS 133 (134)
T ss_dssp TEEEEEECCSSCEEEEETTEEEEEEGGGEEEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CcceeEEcCCCcEEEeeCCEEEEECCCCcEEEEEecChHHHHHHHHHHHHHHhc
Confidence 45666777776543 34889999999999999985
No 28
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=21.78 E-value=1.6e+02 Score=18.97 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=30.6
Q ss_pred CCCChhhhhhhccchHHHHHHHHhcCccccccCCcc
Q 028327 151 ALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARV 186 (210)
Q Consensus 151 ~~LteYnLRrIGSDLEhfIR~LLq~GeisYNl~~RV 186 (210)
..++.=+++++=+=|-.|++.+...|-|..||-..|
T Consensus 68 ~~~s~~Ti~~~~~~lr~~~~~a~~~~~i~~nP~~~v 103 (112)
T 2key_A 68 LCNADSTAQRNLSTIKIYVSAAIKKGYMENDPFKDF 103 (112)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHTTSCCSCHHHHH
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHCCCcccCCcccC
Confidence 457888899998999999999999999999985543
No 29
>3doe_B ADP-ribosylation factor-like protein 2-binding protein; binder of ARL2, small GTPase, effector, complex structure, GTP-binding, lipoprotein; HET: GTP; 2.25A {Homo sapiens} PDB: 3dof_B* 2k9a_A 2k0s_A
Probab=21.06 E-value=62 Score=26.42 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhhhhh-ccchHHHHHHHHh
Q 028327 133 SCNKVFAYFQELVDHYEGALLTEYTLRLI-GSDLEHYIRKLLY 174 (210)
Q Consensus 133 ~l~kVy~~F~ELVe~y~G~~LteYnLRrI-GSDLEhfIR~LLq 174 (210)
..-.||++|.+|||.+ |.+|=.-+| |=+.|.|+..|-+
T Consensus 63 eYT~I~~eY~~LVE~~----Le~~L~e~i~Gfsme~F~~~l~~ 101 (165)
T 3doe_B 63 IYTPIFNEYISLVEKY----IEEQLLQRIPEFNMAAFTTTLQH 101 (165)
T ss_dssp THHHHHHHHHHHHHHH----HHHHHHHHSTTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHcCCCCHHHHHHHHHh
Confidence 5678999999999998 556666664 8899999987763
No 30
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=21.00 E-value=72 Score=23.59 Aligned_cols=50 Identities=16% Similarity=0.357 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhhhhhc-cchHHHHHHHHhcCccccccCCccccc
Q 028327 133 SCNKVFAYFQELVDHYEGALLTEYTLRLIG-SDLEHYIRKLLYDGEIKYNMDARVLNF 189 (210)
Q Consensus 133 ~l~kVy~~F~ELVe~y~G~~LteYnLRrIG-SDLEhfIR~LLq~GeisYNl~~RVlNy 189 (210)
++..+.+.|+++. |.++- +|+.| +++++|+|++=.-=.+.+|.++.|+-+
T Consensus 30 tl~~L~~DYr~l~----G~~iP---~r~lGy~sl~~fL~siPdvv~~~~~~~Gev~v~ 80 (89)
T 3rco_A 30 ALPRLQGEYRSLT----GDWIP---FKQLGFPTLEAYLRSVPAVVRIETSRSGEITCY 80 (89)
T ss_dssp EHHHHHHHHHHHH----SSCCC---TTTTTCSSHHHHHHTCTTTEEEEECTTSCEEEE
T ss_pred CHHHHHHHHHHHh----CCcCC---hhhhCcccHHHHHhcccCeEEEEecCCCCEEEE
Confidence 4566777777764 66664 68888 899999999854444566666665443
No 31
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=20.57 E-value=1.3e+02 Score=21.98 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=28.1
Q ss_pred ceeEEecCCCCccccChHHHHHHHHHHHHHHhhccCC
Q 028327 115 DKLTLILDPTKEFVWTDESCNKVFAYFQELVDHYEGA 151 (210)
Q Consensus 115 ~~LTLdlDPDNEF~W~d~~l~kVy~~F~ELVe~y~G~ 151 (210)
=.+.+.|+||- +++.++.+-.+|.+++....|.
T Consensus 46 YE~m~Il~P~l----~ee~~~~~ve~~~~iI~~~gG~ 78 (96)
T 2kjw_A 46 YEVNIVLNPNL----DQSQLALEKEIIQRALENYGAR 78 (96)
T ss_dssp EEEEEECCSSC----CHHHHHHHHHHHHHHHHHHTCC
T ss_pred hheeeeeCCCC----CHHHHHHHHHHHHHHHHhCCCE
Confidence 35678899984 5899999999999999999774
No 32
>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Caenorhabditis elegans} SCOP: a.39.1.11
Probab=20.44 E-value=49 Score=25.82 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=28.6
Q ss_pred CccccChHHHHHHHHHHHHHHhhccCCCCChhhhhhhccchHHHHHHHHhcCcc
Q 028327 125 KEFVWTDESCNKVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEI 178 (210)
Q Consensus 125 NEF~W~d~~l~kVy~~F~ELVe~y~G~~LteYnLRrIGSDLEhfIR~LLq~Gei 178 (210)
-+|+|..+.|+.+|..|-...+.-+ .+ =|...|.+-|-+.|-|
T Consensus 15 ~~~~~~~~~L~~~F~~Fa~fG~~~~-~~----------M~~k~f~K~~kD~~li 57 (125)
T 1pul_A 15 AGFNWDDADVKKRWDAFTKFGAATA-TE----------MTGKNFDKWLKDAGVL 57 (125)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSS-SC----------CCHHHHHHHHHHHTSC
T ss_pred HhcCccHHHHHHHHHHHHhcCCCcc-cc----------CcHHHHHHHHHHCCCC
Confidence 4799999999999999988755443 11 3556666666666655
No 33
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=20.39 E-value=36 Score=27.31 Aligned_cols=58 Identities=14% Similarity=0.329 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhccCCCCChhhhh-----hhccchHHHHHHHHhcCccccccCCcccccc-CCCcc
Q 028327 135 NKVFAYFQELVDHYEGALLTEYTLR-----LIGSDLEHYIRKLLYDGEIKYNMDARVLNFS-MGKPR 195 (210)
Q Consensus 135 ~kVy~~F~ELVe~y~G~~LteYnLR-----rIGSDLEhfIR~LLq~GeisYNl~~RVlNyS-MGlPr 195 (210)
...+-.|-++|+...=.=+-==|.+ +-|..++.++..|-..| |+...+|||-+ +|.|+
T Consensus 88 ~~L~~~~~r~i~~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~G---Y~v~~~vlna~~yGvPQ 151 (331)
T 3ubt_Y 88 GKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAG---YDVHIILLNANDYGVAQ 151 (331)
T ss_dssp GHHHHHHHHHHHHHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHT---EEEEEEEEEGGGTTCSB
T ss_pred hHHHHHHHHHHhccCCeEEEeeeecccccccccchhhhhhhhhccCC---cEEEEEecccccCCCCc
Confidence 3566677777766532111111222 23567888888887655 99999999976 78986
No 34
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=20.35 E-value=99 Score=19.93 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhccCCCCChhhhhhhccchHHHHHHHHhcCccccccCCcc
Q 028327 136 KVFAYFQELVDHYEGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARV 186 (210)
Q Consensus 136 kVy~~F~ELVe~y~G~~LteYnLRrIGSDLEhfIR~LLq~GeisYNl~~RV 186 (210)
.|.+.++.|.+ ..++.=+++++=+-|-.+++-....|-|..||-..|
T Consensus 57 ~i~~~~~~l~~----~~~s~~t~~~~~~~l~~~~~~A~~~~~i~~nP~~~i 103 (117)
T 2kkp_A 57 DIQRLYASKLE----SGLSPTRVRYIHVVLHEAMSQARESGLLLQNPTEAA 103 (117)
T ss_dssp HHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHHHHTTTSCSSCGGGGS
T ss_pred HHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHCCCcccCccccC
Confidence 34444444443 346777888888889999999999999999986543
No 35
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=20.25 E-value=51 Score=21.64 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=14.8
Q ss_pred CCCccccChHHHHHHHHH
Q 028327 123 PTKEFVWTDESCNKVFAY 140 (210)
Q Consensus 123 PDNEF~W~d~~l~kVy~~ 140 (210)
-||-=+|+|.+|-|+|++
T Consensus 3 sddSDiWDdtALIKayDK 20 (37)
T 3s6n_M 3 SDDSDIWDDTALIKAYDK 20 (37)
T ss_pred ccchhhhhhHHHHHHHHH
Confidence 355668999999999976
Done!