BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028328
         (210 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CVE|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein
           Tt1547 From Thermus Thermophilus Hb8
          Length = 191

 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/144 (54%), Positives = 107/144 (74%)

Query: 17  TIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLSQVSDPRATHNCWAYKVGNQYRSNDD 76
           T+ + V +E+EI+KS+FIA A P+++E+ A +FL++  +P ATHN  AYK+G  YR +DD
Sbjct: 4   TLADKVVYEEEIQKSRFIAKAAPVASEEEALAFLAENREPEATHNGHAYKIGLLYRFSDD 63

Query: 77  GEPSGTAGKPIHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPTIL 136
           GEPSGTAG+PI  AI + GLDR+ V+V RYFGG+KLG GGLVRAYGGVA+E LR AP + 
Sbjct: 64  GEPSGTAGRPILHAIEAQGLDRVAVLVVRYFGGVKLGAGGLVRAYGGVAAEALRRAPKVP 123

Query: 137 VKSRVPMGVEVPFELLGILYHQLQ 160
           +  RV +   VPF  +G +Y  L+
Sbjct: 124 LVERVGLAFLVPFAEVGRVYALLE 147


>pdb|1VI7|A Chain A, Crystal Structure Of An Hypothetical Protein
          Length = 217

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 75/120 (62%), Gaps = 7/120 (5%)

Query: 22  VTFEKEIKKSKFIAIAGPISNEQSAQSFLSQV--SDPRATHNCWAYKVG-----NQYRSN 74
           VT  +EIKKS+FI +       ++A++F+  V    P A H+C A+  G      Q   +
Sbjct: 14  VTVVEEIKKSRFITMLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFS 73

Query: 75  DDGEPSGTAGKPIHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPT 134
           DDGEP+GTAGKP+ + ++ SG+  I  VV RY+GGI LGTGGLV+AYGG  ++ LR   T
Sbjct: 74  DDGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGGVNQALRQLTT 133


>pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
           Sapiens
 pdb|3R2W|B Chain B, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
           Sapiens
 pdb|3R2W|C Chain C, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
           Sapiens
 pdb|3R2W|D Chain D, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
           Sapiens
 pdb|3R3I|A Chain A, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
           Pyrophosphorylase Of Homo Sapiens
 pdb|3R3I|B Chain B, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
           Pyrophosphorylase Of Homo Sapiens
 pdb|3R3I|C Chain C, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
           Pyrophosphorylase Of Homo Sapiens
 pdb|3R3I|D Chain D, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
           Pyrophosphorylase Of Homo Sapiens
          Length = 528

 Score = 28.5 bits (62), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 143 MGVEVPFELLGI----LYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIK 198
           MG + P  L+G+     +  L + Q+E  N+ Y+T    + M +F  D D  + L+    
Sbjct: 141 MGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKY-- 198

Query: 199 NNCR 202
           N+CR
Sbjct: 199 NHCR 202


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,801,546
Number of Sequences: 62578
Number of extensions: 240831
Number of successful extensions: 515
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 4
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)