Query 028328
Match_columns 210
No_of_seqs 125 out of 1246
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 16:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vi7_A Hypothetical protein YI 100.0 1.2E-65 4.1E-70 441.9 20.2 191 14-208 6-203 (217)
2 2cve_A Hypothetical protein TT 100.0 6.6E-65 2.3E-69 430.1 19.7 188 16-207 3-190 (191)
3 3lh2_S 4E10_1VI7A_S0_002_N (T8 99.1 4.3E-11 1.5E-15 85.8 4.9 65 141-209 8-72 (76)
4 2dy1_A Elongation factor G; tr 96.6 0.013 4.4E-07 56.5 11.3 113 91-208 525-640 (665)
5 2xex_A Elongation factor G; GT 96.6 0.016 5.3E-07 56.2 11.4 112 92-208 555-669 (693)
6 1dar_A EF-G, elongation factor 96.5 0.015 5.3E-07 56.3 11.2 113 91-208 555-670 (691)
7 4fn5_A EF-G 1, elongation fact 96.3 0.03 1E-06 54.2 11.8 86 120-208 602-687 (709)
8 2rdo_7 EF-G, elongation factor 96.3 0.017 5.7E-07 56.2 9.6 113 91-208 566-681 (704)
9 1n0u_A EF-2, elongation factor 96.1 0.046 1.6E-06 54.2 12.3 117 91-208 676-795 (842)
10 3j25_A Tetracycline resistance 95.7 0.011 3.7E-07 56.8 5.6 91 115-208 513-603 (638)
11 3l24_A XAA-Pro dipeptidase; PI 95.4 0.0026 8.9E-08 60.3 0.0 29 13-41 463-491 (517)
12 3e3x_A BIPA; MCSG,PSI2, struct 93.4 0.35 1.2E-05 43.6 9.1 72 135-208 122-193 (332)
13 1t95_A Hypothetical protein AF 93.0 0.61 2.1E-05 40.3 9.7 67 138-207 167-233 (240)
14 2wbm_A MTHSBDS, ribosome matur 91.9 0.84 2.9E-05 39.7 9.2 83 122-207 164-248 (252)
15 3cb4_D GTP-binding protein LEP 91.9 0.52 1.8E-05 45.1 8.6 71 135-208 398-469 (599)
16 2ywe_A GTP-binding protein LEP 91.3 0.71 2.4E-05 44.3 8.8 72 135-208 402-474 (600)
17 2kdo_A Ribosome maturation pro 82.6 0.74 2.5E-05 40.0 3.0 65 139-207 172-236 (252)
18 2f1f_A Acetolactate synthase i 43.1 41 0.0014 26.8 5.5 54 143-201 90-143 (164)
19 2fgc_A Acetolactate synthase, 39.1 51 0.0017 27.3 5.5 53 142-200 117-169 (193)
20 2pc6_A Probable acetolactate s 38.0 43 0.0015 26.8 4.8 53 143-200 91-143 (165)
21 1mw7_A Hypothetical protein HP 35.9 27 0.00091 29.9 3.4 74 123-200 152-226 (240)
22 4f3q_A Transcriptional regulat 35.5 23 0.0008 30.4 3.0 72 124-199 153-226 (247)
23 1lfp_A Hypothetical protein AQ 26.7 45 0.0015 28.7 3.3 40 132-171 159-199 (249)
24 3j00_Z Cell division protein F 25.2 20 0.00069 26.5 0.7 9 55-63 89-97 (98)
25 1kon_A Protein YEBC, YEBC; alp 25.0 36 0.0012 29.3 2.4 54 141-198 171-224 (249)
26 2vh7_A Acylphosphatase-1; hydr 22.4 2.2E+02 0.0074 20.4 6.3 23 177-199 46-68 (99)
27 1w2i_A Acylphosphatase; hydrol 20.2 69 0.0024 22.8 2.7 41 155-198 23-63 (91)
No 1
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=100.00 E-value=1.2e-65 Score=441.90 Aligned_cols=191 Identities=32% Similarity=0.535 Sum_probs=183.9
Q ss_pred ceeecccCeeeEEEEecceEEEEEeeCCCHHHHHHHHHHhc--CCCCCceeeEEEEcc-----ccCCCCCCCCCCCCChH
Q 028328 14 AFTTIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLSQVS--DPRATHNCWAYKVGN-----QYRSNDDGEPSGTAGKP 86 (210)
Q Consensus 14 ~y~ti~~~~~~e~~ikkS~Fi~~~~~~~~~~ea~~~l~~~~--~~~A~H~~~Ayr~~~-----~~~~sDDGEPsGtAG~p 86 (210)
.|+||.++.+.|++||||||||+++|++|++||++||+++| ||+|+|||||||++. .+++||||||+||||+|
T Consensus 6 ~y~ti~~~~~~e~~ikkSrFia~~~~v~s~~ea~~~i~~lk~~~~~AtHnc~Ay~~g~~~~~~~~~~sDDGEp~GTAG~p 85 (217)
T 1vi7_A 6 SWLIPAAPVTVVEEIKKSRFITMLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKP 85 (217)
T ss_dssp CEEEESSCEEEEEEETTEEEEEEEEECCHHHHHHHHHHHHHHHCTTCSBCCEEEECCSCSSSCCCEEECTTSCTTSSSHH
T ss_pred CceecccCceEEEEEeCcEEEEEEEecCCHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCcccEeccCCCCCCCCcchHH
Confidence 59999999999999999999999999999999999999997 799999999999975 24789999999999999
Q ss_pred HHHHHHhCCCceEEEEEEEEecCeeecCcchhhhHHHHHHHHHHhCCeeEEEEEEEEEEEEecCchHHHHHHHhhcCCeE
Q 028328 87 IHSAIVSSGLDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVED 166 (210)
Q Consensus 87 iL~vL~~~~l~nv~vVV~RyfGGikLG~ggL~rAY~~aa~~al~~a~~~~~~~~~~~~l~~~Y~~~~~v~~~l~~~~~~i 166 (210)
||++|+..+|+||+|||||||||||||+|||+|||+++|++||+.++++++++...+.++++|++.+.++++|++++++|
T Consensus 86 iL~~L~~~~l~nv~vVVtRyfGGikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i 165 (217)
T 1vi7_A 86 MLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKI 165 (217)
T ss_dssp HHHHHHHHTCCSEEEECCEECCSCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCCCEEEEEEEEeCCceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeCCCCCeeEEEEEEEecCCHHHHHHHHHHhcCCceEEe
Q 028328 167 TNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVFY 208 (210)
Q Consensus 167 ~~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~~t~G~~~~~ 208 (210)
++++|++ .|++++.+|.++.+.|.++|+++|+|++.+.
T Consensus 166 ~~~~y~~----~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~~ 203 (217)
T 1vi7_A 166 INSDYQA----FVLLRVALPAAKVAEFSAKLADFSRGSLQLL 203 (217)
T ss_dssp EEEEESS----SEEEEEEECSSTHHHHHHHHHHHHTTCCCCE
T ss_pred EceEecC----CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 9999997 4999999999999999999999999998754
No 2
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=100.00 E-value=6.6e-65 Score=430.12 Aligned_cols=188 Identities=44% Similarity=0.732 Sum_probs=179.5
Q ss_pred eecccCeeeEEEEecceEEEEEeeCCCHHHHHHHHHHhcCCCCCceeeEEEEccccCCCCCCCCCCCCChHHHHHHHhCC
Q 028328 16 TTIKETVTFEKEIKKSKFIAIAGPISNEQSAQSFLSQVSDPRATHNCWAYKVGNQYRSNDDGEPSGTAGKPIHSAIVSSG 95 (210)
Q Consensus 16 ~ti~~~~~~e~~ikkS~Fi~~~~~~~~~~ea~~~l~~~~~~~A~H~~~Ayr~~~~~~~sDDGEPsGtAG~piL~vL~~~~ 95 (210)
+||.++.+.|++||||||||+++|++|++||++||+.-+||+|+|||||||+++.+++||||||+||||+|||++|++++
T Consensus 3 ~ti~~~~~~e~~~kkS~Fi~~~~~v~s~~ea~~~l~~~~~~~A~H~~~Ay~~g~~~~~~DDGEp~GTAG~piL~~L~~~~ 82 (191)
T 2cve_A 3 LTLADKVVYEEEIQKSRFIAKAAPVASEEEALAFLAENREPEATHNGHAYKIGLLYRFSDDGEPSGTAGRPILHAIEAQG 82 (191)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSSHHHHHHHHHHHCCTTSSEEEEEEEETTEEEEECTTSSTTSSHHHHHHHHHHTT
T ss_pred eecCCCceEEEEEeCCEEEEEEEeCCCHHHHHHHHhhCcCCCCCCeEEEEEEecccccCCCCCcCCcChHHHHHHHHHcC
Confidence 46777889999999999999999999999999999955589999999999998657899999999999999999999999
Q ss_pred CceEEEEEEEEecCeeecCcchhhhHHHHHHHHHHhCCeeEEEEEEEEEEEEecCchHHHHHHHhhcCCeEEeeeeCCCC
Q 028328 96 LDRIMVVVTRYFGGIKLGTGGLVRAYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGK 175 (210)
Q Consensus 96 l~nv~vVV~RyfGGikLG~ggL~rAY~~aa~~al~~a~~~~~~~~~~~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~~ 175 (210)
|+||+|||||||||||||+|||+|||+++|++||+.++++++++...+.++++|++.+.++++|++++ +|++++|++.
T Consensus 83 l~nv~vVVtRyfGGi~LG~ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~~y~~~- 160 (191)
T 2cve_A 83 LDRVAVLVVRYFGGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEETYTPE- 160 (191)
T ss_dssp BCSEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEEEEETT-
T ss_pred CCcEEEEEEEEeCCcccCcchHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceeccEEcCC-
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999972
Q ss_pred CeeEEEEEEEecCCHHHHHHHHHHhcCCceEE
Q 028328 176 DGIAMVTFKVDFDRAENLEDAIKNNCRRDLVF 207 (210)
Q Consensus 176 ~~~v~~~~~v~~~~~~~~~~~L~~~t~G~~~~ 207 (210)
.|++++.+|.++.+.|.++|.++|+|++.+
T Consensus 161 --gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 161 --GVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp --EEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred --eEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 299999999999999999999999999875
No 3
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=99.13 E-value=4.3e-11 Score=85.81 Aligned_cols=65 Identities=6% Similarity=0.065 Sum_probs=58.8
Q ss_pred EEEEEEEecCchHHHHHHHhhcCCeEEeeeeCCCCCeeEEEEEEEecCCHHHHHHHHHHhcCCceEEee
Q 028328 141 VPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVFYK 209 (210)
Q Consensus 141 ~~~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~~t~G~~~~~~ 209 (210)
..++++|||++.+.++++|+++++.|.+++|++ +|++++.+|.++.++|.++|+++|+|++.+.+
T Consensus 8 ~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~~----~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~~~ 72 (76)
T 3lh2_S 8 TEYTLQANWFDITGILWLLGQVDGKIINSDVQA----FVLLRVALPAAKVAEFSAKLADFSGGSLQLLA 72 (76)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCEEEEEEEEE----EEEEEEEECC-CC-CHHHHHHHHHTTCCCBC-
T ss_pred eeEEEEEcccCHHHHHHHHHHCCCEEEcccccC----eEEEEEEECHHHHHHHHHHHHHHhCCEEEEEe
Confidence 568999999999999999999999999999997 59999999999999999999999999987754
No 4
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.63 E-value=0.013 Score=56.49 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=89.4
Q ss_pred HHhCCCceEEEEEEEEecCeee---cCcchhhhHHHHHHHHHHhCCeeEEEEEEEEEEEEecCchHHHHHHHhhcCCeEE
Q 028328 91 IVSSGLDRIMVVVTRYFGGIKL---GTGGLVRAYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVEDT 167 (210)
Q Consensus 91 L~~~~l~nv~vVV~RyfGGikL---G~ggL~rAY~~aa~~al~~a~~~~~~~~~~~~l~~~Y~~~~~v~~~l~~~~~~i~ 167 (210)
|-+.-+.|+-+.+. -|-.+- -.+.+.-|=..|.++|+.+|+-.-+++...+.|.+|-+..+.+...|.+..+++.
T Consensus 525 l~g~pv~~v~v~l~--dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~ 602 (665)
T 2dy1_A 525 LAGFPVMGFKAIVY--NGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRIL 602 (665)
T ss_dssp TTSCCBCSEEEEEE--EEECCTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEE
T ss_pred ccCCceeeEEEEEE--eeeccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEe
Confidence 34455677666663 222211 1122334556777788889999999999999999999999999999999999999
Q ss_pred eeeeCCCCCeeEEEEEEEecCCHHHHHHHHHHhcCCceEEe
Q 028328 168 NQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVFY 208 (210)
Q Consensus 168 ~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~~t~G~~~~~ 208 (210)
+.++.++ .+.++..+|..+.-.|...|+.+|+|++.+.
T Consensus 603 ~~~~~~~---~~~i~a~~P~~e~~~~~~~Lrs~T~G~~~~~ 640 (665)
T 2dy1_A 603 GMEQEGA---LSVVHAEVPLAEVLEYYKALPGLTGGAGAYT 640 (665)
T ss_dssp EEEEETT---EEEEEEEEEGGGCTTHHHHHHHHHTTCCEEE
T ss_pred CcEecCC---eEEEEEEECHHHHhhHHHHhHhhcCCcEEEE
Confidence 9999653 6899999999999999999999999998775
No 5
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.56 E-value=0.016 Score=56.25 Aligned_cols=112 Identities=10% Similarity=0.079 Sum_probs=89.1
Q ss_pred HhCCCceEEEEEEEEecCeee---cCcchhhhHHHHHHHHHHhCCeeEEEEEEEEEEEEecCchHHHHHHHhhcCCeEEe
Q 028328 92 VSSGLDRIMVVVTRYFGGIKL---GTGGLVRAYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVEDTN 168 (210)
Q Consensus 92 ~~~~l~nv~vVV~RyfGGikL---G~ggL~rAY~~aa~~al~~a~~~~~~~~~~~~l~~~Y~~~~~v~~~l~~~~~~i~~ 168 (210)
-++-+.|+-+.+. -|-.+- ..+.+.-|=+.|.++|+.+|+-.-+++...+.|.+|-+..+.+...|.+..++|.+
T Consensus 555 ~g~pv~~v~v~l~--dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~ 632 (693)
T 2xex_A 555 AGYPLIDVKAKLY--DGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDG 632 (693)
T ss_dssp SSCCBCSEEEEEE--EEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred cCCceeeEEEEEE--eccccCCCCCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeec
Confidence 3556777766665 222221 11233445566777788889988999999999999999999999999999999999
Q ss_pred eeeCCCCCeeEEEEEEEecCCHHHHHHHHHHhcCCceEEe
Q 028328 169 QDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVFY 208 (210)
Q Consensus 169 ~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~~t~G~~~~~ 208 (210)
.+..++ ...++..+|..+.-.|...|+.+|+|++.+.
T Consensus 633 ~~~~~~---~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 669 (693)
T 2xex_A 633 MEPRGN---AQVVNAYVPLSEMFGYATSLRSNTQGRGTYT 669 (693)
T ss_dssp EEEETT---EEEEEEEEEGGGCTTHHHHHHHHTTTCCEEE
T ss_pred ccccCC---eEEEEEEeCHHHHHhHHHHhHHhcCCceEEE
Confidence 998753 6899999999999999999999999998775
No 6
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.53 E-value=0.015 Score=56.26 Aligned_cols=113 Identities=11% Similarity=0.085 Sum_probs=89.8
Q ss_pred HHhCCCceEEEEEEEEecCeee---cCcchhhhHHHHHHHHHHhCCeeEEEEEEEEEEEEecCchHHHHHHHhhcCCeEE
Q 028328 91 IVSSGLDRIMVVVTRYFGGIKL---GTGGLVRAYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVEDT 167 (210)
Q Consensus 91 L~~~~l~nv~vVV~RyfGGikL---G~ggL~rAY~~aa~~al~~a~~~~~~~~~~~~l~~~Y~~~~~v~~~l~~~~~~i~ 167 (210)
|-++-+.|+-+.+. -|-.+- ..+.+.-|=+.|.++|+.+|+-+-+++...+.|.+|-+..+.+...|.+..++|.
T Consensus 555 l~g~pv~~v~v~l~--dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~ 632 (691)
T 1dar_A 555 LIGFPVVDIKVTLY--DGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQIL 632 (691)
T ss_dssp TTSCCBCSEEEEEE--EECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEE
T ss_pred ccCCceeeEEEEEE--eeeccccCcchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceee
Confidence 34556777766664 232221 1122344556677778888998899999999999999999999999999999999
Q ss_pred eeeeCCCCCeeEEEEEEEecCCHHHHHHHHHHhcCCceEEe
Q 028328 168 NQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVFY 208 (210)
Q Consensus 168 ~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~~t~G~~~~~ 208 (210)
+.+..++ ...++..+|..+.-.|...|+.+|+|++.+.
T Consensus 633 ~~~~~~~---~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 670 (691)
T 1dar_A 633 GMEPRGN---AQVIRAFVPLAEMFGYATDLRSKTQGRGSFV 670 (691)
T ss_dssp EEEEETT---EEEEEEEEETTTSSSHHHHHHHHTTTCCEEE
T ss_pred cceecCC---eEEEEEEecHHHHhhHHHHHHHhcCCceEEE
Confidence 9998753 6899999999999999999999999998775
No 7
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.33 E-value=0.03 Score=54.22 Aligned_cols=86 Identities=7% Similarity=0.040 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHhCCeeEEEEEEEEEEEEecCchHHHHHHHhhcCCeEEeeeeCCCCCeeEEEEEEEecCCHHHHHHHHHH
Q 028328 120 AYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKN 199 (210)
Q Consensus 120 AY~~aa~~al~~a~~~~~~~~~~~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~ 199 (210)
|=..|.++|+..|+-.-+++...+.|.+|-+..+.+...|.+..++|.+.+...+ ...++..+|..+.-.|...|+.
T Consensus 602 a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i~~~~~~~~---~~~i~a~vPv~E~~gf~~~LRs 678 (709)
T 4fn5_A 602 AASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTVS---GKVIRAEVPLGEMFGYATDVRS 678 (709)
T ss_dssp HHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTCEEEEEEECSS---EEEEEEEEESGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcCCEEeceEecCC---CEEEEEEecHHHhhCHHHHHHh
Confidence 4456778888889988899999999999999999999999999999998888653 4578899999888899999999
Q ss_pred hcCCceEEe
Q 028328 200 NCRRDLVFY 208 (210)
Q Consensus 200 ~t~G~~~~~ 208 (210)
.|+|++.+.
T Consensus 679 ~T~G~a~~~ 687 (709)
T 4fn5_A 679 MSQGRASYS 687 (709)
T ss_dssp HTTTCCEEE
T ss_pred hCCCeEEEE
Confidence 999998875
No 8
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.25 E-value=0.017 Score=56.20 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=88.6
Q ss_pred HHhCCCceEEEEEEEEecCeeec---CcchhhhHHHHHHHHHHhCCeeEEEEEEEEEEEEecCchHHHHHHHhhcCCeEE
Q 028328 91 IVSSGLDRIMVVVTRYFGGIKLG---TGGLVRAYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVEDT 167 (210)
Q Consensus 91 L~~~~l~nv~vVV~RyfGGikLG---~ggL~rAY~~aa~~al~~a~~~~~~~~~~~~l~~~Y~~~~~v~~~l~~~~~~i~ 167 (210)
|-++-+.|+-+.+. -|...-. .+.+.-|=+.|.++|+.+|+-+-+++...+.|.+|-+..+.+...|.+..++|.
T Consensus 566 l~g~pv~~v~v~l~--dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~ 643 (704)
T 2rdo_7 566 LAGYPVVDMGIRLH--FGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLK 643 (704)
T ss_pred cCCCceeeEEEEEE--eccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCCceEe
Confidence 33455667666654 2333211 122334556667777788888889999999999999999999999999999999
Q ss_pred eeeeCCCCCeeEEEEEEEecCCHHHHHHHHHHhcCCceEEe
Q 028328 168 NQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVFY 208 (210)
Q Consensus 168 ~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~~t~G~~~~~ 208 (210)
+.+..++ ...++..+|..+.-.|...|+.+|+|++.+.
T Consensus 644 ~~~~~~~---~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 681 (704)
T 2rdo_7 644 GQESEVT---GVKIHAEVPLSEMFGYATQLRSLTKGRASYT 681 (704)
T ss_pred CceecCC---eEEEEEEecHHHHhhHHHHhHhhcCCceEEE
Confidence 9998753 6899999999999999999999999998775
No 9
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.14 E-value=0.046 Score=54.16 Aligned_cols=117 Identities=10% Similarity=0.137 Sum_probs=92.4
Q ss_pred HHhCCCceEEEEEEE--Eec-CeeecCcchhhhHHHHHHHHHHhCCeeEEEEEEEEEEEEecCchHHHHHHHhhcCCeEE
Q 028328 91 IVSSGLDRIMVVVTR--YFG-GIKLGTGGLVRAYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVEDT 167 (210)
Q Consensus 91 L~~~~l~nv~vVV~R--yfG-GikLG~ggL~rAY~~aa~~al~~a~~~~~~~~~~~~l~~~Y~~~~~v~~~l~~~~~~i~ 167 (210)
|.++.+.|+-+.+.- |-- -...+.|-+.-|=+.|.++|+.+|+-+-+++.-.+.|.+|-+..+.+...|.+..+.|.
T Consensus 676 L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP~e~~G~V~~dL~~RRG~i~ 755 (842)
T 1n0u_A 676 IFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVV 755 (842)
T ss_dssp TTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEECGGGHHHHHHHHHTTTCEEE
T ss_pred cCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHHHhCCCeEEeeEEEEEEEccHHHHHHHHHHHHhcCcEEe
Confidence 556788898777753 221 01123333677778889999999999999999999999999999999999999999998
Q ss_pred eeeeCCCCCeeEEEEEEEecCCHHHHHHHHHHhcCCceEEe
Q 028328 168 NQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVFY 208 (210)
Q Consensus 168 ~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~~t~G~~~~~ 208 (210)
+.+-.++ .+...++..+|..+.-.|...|+.+|+|++.+.
T Consensus 756 ~~~~~~g-~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~ 795 (842)
T 1n0u_A 756 SEEQRPG-TPLFTVKAYLPVNESFGFTGELRQATGGQAFPQ 795 (842)
T ss_dssp EEEC----CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEE
T ss_pred ccccCCC-CceEEEEEEcChHHhhhhHHHHHhhCCCCceEE
Confidence 7665321 123789999999999999999999999998775
No 10
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.75 E-value=0.011 Score=56.79 Aligned_cols=91 Identities=11% Similarity=0.096 Sum_probs=78.8
Q ss_pred cchhhhHHHHHHHHHHhCCeeEEEEEEEEEEEEecCchHHHHHHHhhcCCeEEeeeeCCCCCeeEEEEEEEecCCHHHHH
Q 028328 115 GGLVRAYGGVASECLRNAPTILVKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLE 194 (210)
Q Consensus 115 ggL~rAY~~aa~~al~~a~~~~~~~~~~~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~~~~~v~~~~~v~~~~~~~~~ 194 (210)
+-+.-|-..|.++|+.+|+-+-++|...+.|.+|-+..+.+...|.+..++|.+.+...+ ...+...+|..+.-.|.
T Consensus 513 ~~f~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~~---~~~i~a~vP~~e~~gy~ 589 (638)
T 3j25_A 513 ADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNN---EVILSGEIPARCIQEYR 589 (638)
T ss_dssp HHHHHHHHHHHHHHHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCTT---EEEEECCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecCC---eEEEEEEECHHHhhCHH
Confidence 334456677788888888888889999999999999999999999999999998777553 67888899999999999
Q ss_pred HHHHHhcCCceEEe
Q 028328 195 DAIKNNCRRDLVFY 208 (210)
Q Consensus 195 ~~L~~~t~G~~~~~ 208 (210)
..|+.+|+|++.+.
T Consensus 590 ~~Lrs~T~G~a~~~ 603 (638)
T 3j25_A 590 SDLTFFTNGRSVCL 603 (638)
T ss_dssp HHHHHTTTTCCEEE
T ss_pred HHHHhhCCCcEEEE
Confidence 99999999999875
No 11
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase, manganese, metal-binding, metalloprotease, protease; 2.30A {Alteromonas SP} PDB: 3l7g_A*
Probab=95.41 E-value=0.0026 Score=60.29 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=0.0
Q ss_pred cceeecccCeeeEEEEecceEEEEEeeCC
Q 028328 13 GAFTTIKETVTFEKEIKKSKFIAIAGPIS 41 (210)
Q Consensus 13 ~~y~ti~~~~~~e~~ikkS~Fi~~~~~~~ 41 (210)
.+|.++..+.+.|.+|||||||+++.|-.
T Consensus 463 ~~y~~~~~~~~~e~~ikkSrFi~~~~~~~ 491 (517)
T 3l24_A 463 SEYSYPSEPLSYEEEIKKSTFIVHVRTRR 491 (517)
T ss_dssp -----------------------------
T ss_pred ccCcccCCCceEEEEEecceeEEEeccce
Confidence 48999999999999999999999998753
No 12
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=93.42 E-value=0.35 Score=43.61 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=64.2
Q ss_pred eEEEEEEEEEEEEecCchHHHHHHHhhcCCeEEeeeeCCCCCeeEEEEEEEecCCHHHHHHHHHHhcCCceEEe
Q 028328 135 ILVKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVFY 208 (210)
Q Consensus 135 ~~~~~~~~~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~~t~G~~~~~ 208 (210)
+.+++...+.|.+|-+..+.+...|.+..+++.+.++..+ +.+.++..+|....-.|...|..+|+|++.+.
T Consensus 122 ~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~~~--g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~ 193 (332)
T 3e3x_A 122 QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGK--GRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLY 193 (332)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEECSS--SEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEE
T ss_pred EEECcEEEEEEEECHHHHHHHHHHHHhhcccccCceECCC--CeEEEEEEEChHHhhhHHHHhhhhCCCcEEEE
Confidence 5578889999999999999999999999999999988642 36889999999998899999999999998774
No 13
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=93.01 E-value=0.61 Score=40.32 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=55.6
Q ss_pred EEEEEEEEEEecCchHHHHHHHhhcCCeEEeeeeCCCCCeeEEEEEEEecCCHHHHHHHHHHhcCCceEE
Q 028328 138 KSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVF 207 (210)
Q Consensus 138 ~~~~~~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~~t~G~~~~ 207 (210)
...-.+.+.+|-.+.+.+...|.+++ .+..++|.+ |+...+.+.+|+.....|.+.|.+.|.|.+.+
T Consensus 167 ra~m~~~v~vp~~~~~~~~~~l~~~~-~v~~ee~~~--dgs~~~v~~Ippg~~~~~~~~l~~~tkG~~~~ 233 (240)
T 1t95_A 167 FEEMEIAIKIPPEHTGRAISALYNFG-GVTREEWQR--DGSWICVMRIPSGMYGDLMDLLGKVAKGEALT 233 (240)
T ss_dssp ECEEEEEEEECGGGHHHHHHHHHHHC-CEEEEEECT--TSCEEEEEEEEGGGHHHHHHHHHHHHTTCCEE
T ss_pred eeEEEEEEEEcHHHHHHHHHHHHhhC-eeeeecccC--CCcEEEEEEECCccHHHHHHHHHHhcCCeEEE
Confidence 34566788899888999999998886 678889975 34567789999999999999999999997654
No 14
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.91 E-value=0.84 Score=39.73 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCC-eeE-EEEEEEEEEEEecCchHHHHHHHhhcCCeEEeeeeCCCCCeeEEEEEEEecCCHHHHHHHHHH
Q 028328 122 GGVASECLRNAP-TIL-VKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKN 199 (210)
Q Consensus 122 ~~aa~~al~~a~-~~~-~~~~~~~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~ 199 (210)
..=|.+++.+.. +.. ....-.+.+++|-+..+.+...|.+++ .+..++|.+ |+...+.+.+|+.....|.+.|.+
T Consensus 164 k~Qalevik~L~~~iPI~ra~m~l~v~ip~~~~~~~~~~l~~~~-~v~~ee~~~--dgs~~~v~~i~pg~~~~~~~~v~~ 240 (252)
T 2wbm_A 164 DEQVNIVLKAIRTKIPIKFEKVRVAIKIPGEMAGSAYGVISNFG-KITNEEWQN--DGSWIAVVEIPGGLQDSFYQKLSE 240 (252)
T ss_dssp HHHHHHHHHHHTTTSCCEECEEEEEEEECGGGHHHHHHHHHHHC-EEEEEEECT--TSCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCeeEeeEEEEEEEcHHHHHHHHHHHHhhC-eeeeecccC--CCcEEEEEEECCccHHHHHHHHHH
Confidence 344444444332 222 334556788899888999999998885 778899975 245777899999999999999999
Q ss_pred hcCCceEE
Q 028328 200 NCRRDLVF 207 (210)
Q Consensus 200 ~t~G~~~~ 207 (210)
.|.|+..+
T Consensus 241 ~tkG~~~~ 248 (252)
T 2wbm_A 241 LTGGNVET 248 (252)
T ss_dssp HTTTCCEE
T ss_pred hcCCeEEE
Confidence 99997654
No 15
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=91.87 E-value=0.52 Score=45.13 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=64.3
Q ss_pred eEEEEEEEEEEEEecCchHHHHHHHhhcCCeEEeeeeCCCCCeeEEEEEEEecCCH-HHHHHHHHHhcCCceEEe
Q 028328 135 ILVKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRA-ENLEDAIKNNCRRDLVFY 208 (210)
Q Consensus 135 ~~~~~~~~~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~~~~~v~~~~~v~~~~~-~~~~~~L~~~t~G~~~~~ 208 (210)
+-++|...+++.+|=++.+.+...+.+..+++.+.+|.++ .+.++..+|..+. ..|...|+..|+|++.|.
T Consensus 398 ~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~~---~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~ 469 (599)
T 3cb4_D 398 ELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGN---QVALTYEIPMAEVVLDFFDRLKSTSRGYASLD 469 (599)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCTT---EEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEE
T ss_pred hhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecCC---eEEEEEEecHHHHHHHHHHhhhhcCCcEEEEE
Confidence 3578889999999999999999999999999999999753 6899999999998 799999999999998875
No 16
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=91.28 E-value=0.71 Score=44.30 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=64.1
Q ss_pred eEEEEEEEEEEEEecCchHHHHHHHhhcCCeEEeeeeCCCCCeeEEEEEEEecCCH-HHHHHHHHHhcCCceEEe
Q 028328 135 ILVKSRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRA-ENLEDAIKNNCRRDLVFY 208 (210)
Q Consensus 135 ~~~~~~~~~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~~~~~v~~~~~v~~~~~-~~~~~~L~~~t~G~~~~~ 208 (210)
.-++|...+++.+|=++.+.+...+.+..+++.+.+|.++ +.+.++..+|..+. -.|...|+..|+|++.|.
T Consensus 402 ~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~--~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~ 474 (600)
T 2ywe_A 402 YVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDP--NTVYLEYEMPLSEIIVDFHDKIKSISRGFASYD 474 (600)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEET--TEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCC--CEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEE
Confidence 4578889999999999999999999999999999999532 26899999999998 899999999999998774
No 17
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=82.63 E-value=0.74 Score=40.05 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=54.0
Q ss_pred EEEEEEEEEecCchHHHHHHHhhcCCeEEeeeeCCCCCeeEEEEEEEecCCHHHHHHHHHHhcCCceEE
Q 028328 139 SRVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNCRRDLVF 207 (210)
Q Consensus 139 ~~~~~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~~t~G~~~~ 207 (210)
..-.+.+++|-++.+.+...|.++...+.+++|.++ ..+.+.+|+.....|.+.|.+.|.|...+
T Consensus 172 a~m~l~v~vp~~~~~~~~~~l~~~~~~v~~ee~~~~----~~~v~~I~pg~~~~~~~~v~~~tkG~~~~ 236 (252)
T 2kdo_A 172 AHMRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQQ----LEIVCLIDPGCFREIDELIKKETKGKGSL 236 (252)
T ss_dssp ECCCEEEECBHHHHHHHTTTHHHHTCEEEEECCSSB----CCEEECCCGGGHHHHHHHHHHHTTTTSEE
T ss_pred eeEEEEEEEcHHHHHHHHHHHHHhhCcceeeeccCC----eEEEEEECCcchHHHHHHHHHhcCCCEEE
Confidence 445677888877888888888888778889999862 67889999999999999999999886553
No 18
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=43.12 E-value=41 Score=26.84 Aligned_cols=54 Identities=6% Similarity=0.025 Sum_probs=41.5
Q ss_pred EEEEEecCchHHHHHHHhhcCCeEEeeeeCCCCCeeEEEEEEEecCCHHHHHHHHHHhc
Q 028328 143 MGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNNC 201 (210)
Q Consensus 143 ~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~~t 201 (210)
+.+..+-..-..+.++.+.|++.|+|..=. .+++.+.-.++.+++|.+.|..+-
T Consensus 90 iKv~~~~~~r~~i~~~~~~fra~ivdv~~~-----~~~ie~tg~~~ki~~~~~~l~~~g 143 (164)
T 2f1f_A 90 VKIQASGYGRDEVKRNTEIFRGQIIDVTPS-----LYTVQLAGTSGKLDAFLASIRDVA 143 (164)
T ss_dssp EEEECCTHHHHHHHHHHHHTTCEEEEECSS-----EEEEEEEECHHHHHHHHHHHTTTS
T ss_pred EEEECCcccHHHHHHHHHHcCCEEEEECCC-----EEEEEEeCCHHHHHHHHHHHHhcC
Confidence 444444444567999999999999965433 478888888999999999998754
No 19
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=39.05 E-value=51 Score=27.32 Aligned_cols=53 Identities=8% Similarity=0.137 Sum_probs=41.9
Q ss_pred EEEEEEecCchHHHHHHHhhcCCeEEeeeeCCCCCeeEEEEEEEecCCHHHHHHHHHHh
Q 028328 142 PMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNN 200 (210)
Q Consensus 142 ~~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~~ 200 (210)
-+.+..+-. -..+.++.+.|++.|+|..=. .+++.+.-.++++++|.+.|..+
T Consensus 117 LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~-----s~~iE~tG~~~ki~a~i~~l~~~ 169 (193)
T 2fgc_A 117 LIKVRFDED-KQEIFQLVEIFRGKIIDVSRE-----GAIIEITGARSKVEAFINLLPQK 169 (193)
T ss_dssp EEEEECSSC-HHHHHHHHHHTTCEEEEECSS-----EEEEEEEECHHHHHHHHHHSCGG
T ss_pred EEEEeCCcC-HHHHHHHHHHcCCEEEEEcCC-----EEEEEEcCCHHHHHHHHHHhhhh
Confidence 445566655 778999999999999965433 47888888899999999998764
No 20
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=37.95 E-value=43 Score=26.82 Aligned_cols=53 Identities=8% Similarity=0.044 Sum_probs=40.8
Q ss_pred EEEEEecCchHHHHHHHhhcCCeEEeeeeCCCCCeeEEEEEEEecCCHHHHHHHHHHh
Q 028328 143 MGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNN 200 (210)
Q Consensus 143 ~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~~ 200 (210)
+.+..+-..-..+.++.+.|++.|+|..=. .+++.+.-.++.+++|.+.|..+
T Consensus 91 iKv~~~~~~r~~i~~~~~~fra~ivdv~~~-----~~~ie~tg~~~ki~~~~~~l~~~ 143 (165)
T 2pc6_A 91 VKVRAVGKDREEMKRLADIFRGNIIDVTNE-----LYTIELTGTRSKLDGFLQAVDCN 143 (165)
T ss_dssp EEEECCTHHHHHHHHHHHHTTCEEEEEETT-----EEEEEEEECHHHHHHHHHHSCGG
T ss_pred EEEeCCcccHHHHHHHHHHcCCEEEEEcCC-----EEEEEEcCCHHHHHHHHHHhhhc
Confidence 444444444567999999999999965443 47888888899999999998764
No 21
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=35.87 E-value=27 Score=29.95 Aligned_cols=74 Identities=5% Similarity=-0.006 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCeeEEEE-EEEEEEEEecCchHHHHHHHhhcCCeEEeeeeCCCCCeeEEEEEEEecCCHHHHHHHHHHh
Q 028328 123 GVASECLRNAPTILVKS-RVPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKNN 200 (210)
Q Consensus 123 ~aa~~al~~a~~~~~~~-~~~~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~~ 200 (210)
..+.++.-+|+...+.. ...+.|.++...+..|+..|++.++++.+.+..-.| .-.+.++.++.+.+.+.|..+
T Consensus 152 d~~le~aleaGAeDv~~e~~~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P----~~~v~l~~e~~~~~~klid~L 226 (240)
T 1mw7_A 152 EDLEFALIDYGLEELEEVEDKIIIRGDYNSFKLLNEGFESLKLPILKASLQRIA----TTPIELNDEQMELTEKLLDRI 226 (240)
T ss_dssp HHHHHHHGGGTEEEEEEETTEEEEEEEGGGHHHHHHHHHHTTCCCSEEEEEEEE----SSCBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCceeecCCceEEEEECHHHHHHHHHHHHHcCCCeeeeeeEeCC----CCCcccCHHHHHHHHHHHHHH
Confidence 34445444567655543 346899999999999999999988876554432111 111345555566555554433
No 22
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=35.51 E-value=23 Score=30.44 Aligned_cols=72 Identities=11% Similarity=0.017 Sum_probs=41.7
Q ss_pred HHHHHHHhCCeeEEEEE--EEEEEEEecCchHHHHHHHhhcCCeEEeeeeCCCCCeeEEEEEEEecCCHHHHHHHHHH
Q 028328 124 VASECLRNAPTILVKSR--VPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIKN 199 (210)
Q Consensus 124 aa~~al~~a~~~~~~~~--~~~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~~ 199 (210)
.+.+++-+|+...+... ..+.|.++.+.+..++..|.+.++++.+.+..-.| .-.+.++.++.+.+.+.|..
T Consensus 153 ~~~e~aieaGAeDv~~~edg~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P----~~~v~l~~e~~~~~~klid~ 226 (247)
T 4f3q_A 153 KIMEIALEVGAEDVTTNDDGSIDVTTLPEDFEKIRNAMKAADLNPSHAEVTVLA----STEVGLDKDSAEQMLRLTEM 226 (247)
T ss_dssp HHHHHHHHHTCSEEEECTTSCEEEEECGGGHHHHHHHHHHTTCCCSEEEEEEEE----SSCEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCceeeecCCceEEEEECHHHHHHHHHHHHHcCCCeeEEEEEEec----CCccccCHHHHHHHHHHHHH
Confidence 33333334454444433 25888999999999999999888776654432111 11244565555555554443
No 23
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=26.70 E-value=45 Score=28.70 Aligned_cols=40 Identities=13% Similarity=-0.108 Sum_probs=27.1
Q ss_pred CCeeEEEE-EEEEEEEEecCchHHHHHHHhhcCCeEEeeee
Q 028328 132 APTILVKS-RVPMGVEVPFELLGILYHQLQLFQVEDTNQDY 171 (210)
Q Consensus 132 a~~~~~~~-~~~~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y 171 (210)
|+...+.. ...+.|.++...+..++..|++.++++.+.+.
T Consensus 159 aGAeDv~~e~~~~~v~t~p~~~~~V~~aL~~~g~~~~~aei 199 (249)
T 1lfp_A 159 VGAEDVQPGEEVHIIYTVPEELYEVKENLEKLGVPIEKAQI 199 (249)
T ss_dssp HTCSEEECCSSEEEEEECGGGHHHHHHHHHTTTCCCSEEEE
T ss_pred cCCceeecCCceEEEEECHHHHHHHHHHHHHcCCCeeeeee
Confidence 44433332 34578888899999999998887776654443
No 24
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=25.18 E-value=20 Score=26.50 Aligned_cols=9 Identities=56% Similarity=1.483 Sum_probs=8.2
Q ss_pred CCCCCceee
Q 028328 55 DPRATHNCW 63 (210)
Q Consensus 55 ~~~A~H~~~ 63 (210)
+|.|+|.||
T Consensus 89 ~~~~~~~~~ 97 (98)
T 3j00_Z 89 KPGARHPCW 97 (98)
T ss_dssp CCCCCCCCC
T ss_pred CCCccCCCC
Confidence 489999999
No 25
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=24.99 E-value=36 Score=29.29 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=32.4
Q ss_pred EEEEEEEecCchHHHHHHHhhcCCeEEeeeeCCCCCeeEEEEEEEecCCHHHHHHHHH
Q 028328 141 VPMGVEVPFELLGILYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIK 198 (210)
Q Consensus 141 ~~~~l~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~ 198 (210)
..+.|.++...+..+...|++.++++.+.+..-.| .-.+.++.++.+.+.+.|.
T Consensus 171 ~~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P----~~~v~l~~e~~~~~~klid 224 (249)
T 1kon_A 171 GAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIP----STKADMDAETAPKLMRLID 224 (249)
T ss_dssp SCEEEEEEGGGHHHHHHHHHHTTCCCSEEEEEEEE----SSCCCCCTTTSHHHHHHHH
T ss_pred ceEEEEECHHHHHHHHHHHHHcCCCeeeeeeEECC----CCceecCHHHHHHHHHHHH
Confidence 45778888888888888888877765544332111 1113455666655544443
No 26
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=22.44 E-value=2.2e+02 Score=20.35 Aligned_cols=23 Identities=4% Similarity=0.224 Sum_probs=13.9
Q ss_pred eeEEEEEEEecCCHHHHHHHHHH
Q 028328 177 GIAMVTFKVDFDRAENLEDAIKN 199 (210)
Q Consensus 177 ~~v~~~~~v~~~~~~~~~~~L~~ 199 (210)
|.|.+.++-+++.+++|.++|.+
T Consensus 46 G~Vei~~eG~~~~v~~f~~~l~~ 68 (99)
T 2vh7_A 46 GTVQGQLQGPISKVRHMQEWLET 68 (99)
T ss_dssp SCEEEEEEEEHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCHHHHHHHHHHHHh
Confidence 34666666666666666666653
No 27
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=20.17 E-value=69 Score=22.79 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=23.9
Q ss_pred HHHHHhhcCCeEEeeeeCCCCCeeEEEEEEEecCCHHHHHHHHH
Q 028328 155 LYHQLQLFQVEDTNQDYDTGKDGIAMVTFKVDFDRAENLEDAIK 198 (210)
Q Consensus 155 v~~~l~~~~~~i~~~~y~~~~~~~v~~~~~v~~~~~~~~~~~L~ 198 (210)
+.++.+++++.=-=.+-. |+.|.+.++-+++.+++|.++|.
T Consensus 23 v~~~A~~lgL~G~V~N~~---dG~Vei~~~G~~~~v~~f~~~l~ 63 (91)
T 1w2i_A 23 MQREARKLGVNGWVRNLP---DGSVEAVLEGDEERVEALIGWAH 63 (91)
T ss_dssp HHHHHHHHTCEEEEEECT---TSCEEEEEEEEHHHHHHHHHHTT
T ss_pred HHHHHHHcCCeEEEEECC---CCCEEEEEEeCHHHHHHHHHHHH
Confidence 444445555443222222 34577777777777777777776
Done!