Query 028329
Match_columns 210
No_of_seqs 148 out of 1666
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 09:48:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.1E-42 4.5E-47 241.8 20.3 199 9-210 4-204 (205)
2 KOG0080 GTPase Rab18, small G 100.0 7.2E-41 1.6E-45 226.1 18.7 201 9-210 6-207 (209)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 3.6E-40 7.9E-45 229.7 19.3 196 12-210 3-199 (200)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.8E-38 3.9E-43 221.4 19.5 170 11-181 19-189 (221)
5 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.6E-38 7.8E-43 232.5 21.9 195 15-210 1-201 (201)
6 KOG0078 GTP-binding protein SE 100.0 7.3E-38 1.6E-42 222.1 20.8 173 8-182 6-179 (207)
7 PLN03118 Rab family protein; P 100.0 6.1E-37 1.3E-41 227.5 23.7 210 1-210 1-210 (211)
8 cd04120 Rab12 Rab12 subfamily. 100.0 9.2E-37 2E-41 223.9 22.3 193 15-210 1-202 (202)
9 cd04121 Rab40 Rab40 subfamily. 100.0 7.8E-36 1.7E-40 217.1 21.7 167 11-180 3-170 (189)
10 KOG0394 Ras-related GTPase [Ge 100.0 1.7E-36 3.7E-41 209.5 16.8 171 11-182 6-183 (210)
11 KOG0098 GTPase Rab2, small G p 100.0 1.9E-36 4.2E-41 209.6 16.9 169 11-181 3-172 (216)
12 KOG0079 GTP-binding protein H- 100.0 1.1E-36 2.4E-41 203.2 12.0 165 13-180 7-172 (198)
13 cd04110 Rab35 Rab35 subfamily. 100.0 6.6E-35 1.4E-39 214.7 22.5 195 12-210 4-199 (199)
14 PTZ00369 Ras-like protein; Pro 100.0 2.1E-35 4.6E-40 215.7 19.6 182 14-210 5-187 (189)
15 cd04112 Rab26 Rab26 subfamily. 100.0 5.4E-35 1.2E-39 213.9 21.5 189 15-210 1-191 (191)
16 cd04144 Ras2 Ras2 subfamily. 100.0 2.7E-35 5.8E-40 215.3 19.8 185 16-210 1-188 (190)
17 cd04126 Rab20 Rab20 subfamily. 100.0 3.8E-35 8.2E-40 217.7 20.0 187 15-210 1-220 (220)
18 PLN03110 Rab GTPase; Provision 100.0 2E-34 4.2E-39 214.5 23.0 167 11-179 9-176 (216)
19 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 7.6E-35 1.6E-39 209.6 20.1 166 14-181 2-168 (172)
20 KOG0093 GTPase Rab3, small G p 100.0 2.8E-35 6E-40 196.3 15.1 175 5-181 12-187 (193)
21 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.9E-34 6.3E-39 207.9 20.6 163 12-177 3-180 (182)
22 cd04122 Rab14 Rab14 subfamily. 100.0 3.5E-34 7.6E-39 205.2 20.5 163 14-178 2-165 (166)
23 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.4E-34 3.1E-39 204.5 18.0 176 5-182 5-181 (222)
24 cd04109 Rab28 Rab28 subfamily. 100.0 5.5E-34 1.2E-38 212.2 21.8 165 15-180 1-169 (215)
25 cd04133 Rop_like Rop subfamily 100.0 5.4E-34 1.2E-38 205.3 20.7 161 15-178 2-174 (176)
26 cd04125 RabA_like RabA-like su 100.0 8.2E-34 1.8E-38 207.2 21.5 164 15-180 1-165 (188)
27 cd04111 Rab39 Rab39 subfamily. 100.0 9.7E-34 2.1E-38 210.0 22.0 168 14-182 2-171 (211)
28 cd04131 Rnd Rnd subfamily. Th 100.0 7.8E-34 1.7E-38 205.2 20.4 161 14-177 1-176 (178)
29 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3E-33 6.5E-38 208.7 23.7 167 10-179 9-190 (232)
30 KOG0088 GTPase Rab21, small G 100.0 4.1E-35 8.9E-40 197.9 12.2 201 8-210 7-216 (218)
31 cd01875 RhoG RhoG subfamily. 100.0 1.3E-33 2.8E-38 206.5 20.8 162 14-178 3-178 (191)
32 cd04127 Rab27A Rab27a subfamil 100.0 1.2E-33 2.6E-38 204.9 20.1 167 12-179 2-179 (180)
33 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.6E-33 7.7E-38 207.2 22.0 165 15-182 2-181 (222)
34 cd01867 Rab8_Rab10_Rab13_like 100.0 2.4E-33 5.2E-38 201.1 20.4 164 13-178 2-166 (167)
35 cd04119 RJL RJL (RabJ-Like) su 100.0 3E-33 6.5E-38 200.3 20.0 163 15-178 1-168 (168)
36 cd04136 Rap_like Rap-like subf 100.0 3E-33 6.6E-38 199.6 19.5 160 15-176 2-162 (163)
37 KOG0091 GTPase Rab39, small G 100.0 4.9E-34 1.1E-38 193.6 14.2 171 11-182 5-178 (213)
38 cd04132 Rho4_like Rho4-like su 100.0 4.3E-33 9.3E-38 203.3 20.3 166 15-183 1-173 (187)
39 cd01865 Rab3 Rab3 subfamily. 100.0 8E-33 1.7E-37 197.9 20.9 162 15-178 2-164 (165)
40 cd04175 Rap1 Rap1 subgroup. T 100.0 6E-33 1.3E-37 198.4 20.0 161 15-177 2-163 (164)
41 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 7.9E-33 1.7E-37 198.1 20.5 163 14-178 2-165 (166)
42 cd04118 Rab24 Rab24 subfamily. 100.0 1.7E-32 3.7E-37 201.1 22.6 163 15-180 1-169 (193)
43 cd01874 Cdc42 Cdc42 subfamily. 100.0 7.8E-33 1.7E-37 199.7 20.1 159 15-176 2-174 (175)
44 cd04117 Rab15 Rab15 subfamily. 100.0 7.3E-33 1.6E-37 197.4 19.6 159 15-175 1-160 (161)
45 cd04134 Rho3 Rho3 subfamily. 100.0 1E-32 2.2E-37 201.5 20.8 163 15-180 1-177 (189)
46 PF00071 Ras: Ras family; Int 100.0 6.6E-33 1.4E-37 197.7 19.1 160 16-177 1-161 (162)
47 PLN03071 GTP-binding nuclear p 100.0 2E-32 4.3E-37 204.0 21.5 165 12-181 11-176 (219)
48 smart00173 RAS Ras subfamily o 100.0 1.3E-32 2.8E-37 196.6 19.7 162 15-177 1-162 (164)
49 cd01866 Rab2 Rab2 subfamily. 100.0 3E-32 6.4E-37 195.6 20.8 164 13-178 3-167 (168)
50 cd01871 Rac1_like Rac1-like su 100.0 1.8E-32 4E-37 197.6 19.5 158 15-175 2-173 (174)
51 cd04176 Rap2 Rap2 subgroup. T 100.0 1.7E-32 3.8E-37 195.7 19.3 161 15-176 2-162 (163)
52 PLN03108 Rab family protein; P 100.0 7.9E-32 1.7E-36 199.8 22.2 166 12-179 4-170 (210)
53 cd04128 Spg1 Spg1p. Spg1p (se 100.0 3.9E-32 8.4E-37 197.0 19.9 163 15-180 1-169 (182)
54 cd01864 Rab19 Rab19 subfamily. 100.0 4E-32 8.7E-37 194.3 19.8 161 13-175 2-164 (165)
55 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 5.4E-32 1.2E-36 194.5 20.4 162 16-178 2-166 (170)
56 cd04140 ARHI_like ARHI subfami 100.0 4.5E-32 9.8E-37 194.0 19.9 159 15-175 2-163 (165)
57 cd04138 H_N_K_Ras_like H-Ras/N 100.0 5.5E-32 1.2E-36 192.7 20.2 159 15-176 2-161 (162)
58 cd04113 Rab4 Rab4 subfamily. 100.0 4E-32 8.6E-37 193.5 19.0 159 15-175 1-160 (161)
59 cd04145 M_R_Ras_like M-Ras/R-R 100.0 6.6E-32 1.4E-36 192.8 20.2 161 14-176 2-163 (164)
60 cd00877 Ran Ran (Ras-related n 100.0 6.7E-32 1.5E-36 193.3 20.1 161 15-180 1-162 (166)
61 KOG0095 GTPase Rab30, small G 100.0 9E-33 1.9E-37 184.9 14.0 169 12-182 5-174 (213)
62 cd01868 Rab11_like Rab11-like. 100.0 7.8E-32 1.7E-36 192.7 20.0 162 13-176 2-164 (165)
63 cd04115 Rab33B_Rab33A Rab33B/R 100.0 8.5E-32 1.8E-36 193.5 19.9 162 14-176 2-168 (170)
64 smart00174 RHO Rho (Ras homolo 100.0 9.4E-32 2E-36 193.9 19.5 160 17-178 1-173 (174)
65 smart00175 RAB Rab subfamily o 100.0 1.6E-31 3.4E-36 190.8 20.0 162 15-178 1-163 (164)
66 cd04106 Rab23_lke Rab23-like s 100.0 9.9E-32 2.1E-36 191.6 18.8 158 15-175 1-161 (162)
67 cd04116 Rab9 Rab9 subfamily. 100.0 2.3E-31 4.9E-36 191.3 20.4 162 12-175 3-169 (170)
68 KOG0086 GTPase Rab4, small G p 100.0 2.5E-32 5.4E-37 183.4 13.1 172 9-182 4-176 (214)
69 cd04124 RabL2 RabL2 subfamily. 100.0 4.2E-31 9E-36 188.3 20.1 159 15-179 1-160 (161)
70 cd04142 RRP22 RRP22 subfamily. 100.0 3.1E-31 6.7E-36 194.6 20.0 167 15-182 1-179 (198)
71 cd01860 Rab5_related Rab5-rela 100.0 5.4E-31 1.2E-35 188.0 19.9 161 14-176 1-162 (163)
72 KOG0081 GTPase Rab27, small G 100.0 1.2E-33 2.5E-38 191.0 5.6 171 12-183 7-187 (219)
73 smart00176 RAN Ran (Ras-relate 100.0 6.5E-31 1.4E-35 192.7 20.1 157 20-181 1-158 (200)
74 cd04177 RSR1 RSR1 subgroup. R 100.0 6.6E-31 1.4E-35 188.5 19.8 161 15-177 2-164 (168)
75 cd01873 RhoBTB RhoBTB subfamil 100.0 4.7E-31 1E-35 193.0 19.4 158 14-175 2-194 (195)
76 cd04103 Centaurin_gamma Centau 100.0 4E-31 8.7E-36 187.6 18.2 154 15-175 1-157 (158)
77 cd04135 Tc10 TC10 subfamily. 100.0 7.3E-31 1.6E-35 189.3 19.8 160 15-176 1-173 (174)
78 cd01861 Rab6 Rab6 subfamily. 100.0 7.8E-31 1.7E-35 186.7 19.3 159 15-175 1-160 (161)
79 cd01863 Rab18 Rab18 subfamily. 100.0 1E-30 2.2E-35 186.2 19.6 159 15-175 1-160 (161)
80 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1E-30 2.3E-35 188.4 19.6 158 15-174 1-171 (173)
81 cd04146 RERG_RasL11_like RERG/ 100.0 5.1E-31 1.1E-35 188.6 17.4 160 16-177 1-164 (165)
82 cd01862 Rab7 Rab7 subfamily. 100.0 2E-30 4.3E-35 186.5 20.4 165 15-180 1-170 (172)
83 cd04148 RGK RGK subfamily. Th 100.0 1.5E-30 3.3E-35 194.2 20.2 165 15-182 1-168 (221)
84 cd04123 Rab21 Rab21 subfamily. 100.0 2.2E-30 4.7E-35 184.4 19.6 160 15-176 1-161 (162)
85 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.3E-30 5E-35 184.9 19.3 159 15-176 1-163 (164)
86 cd01892 Miro2 Miro2 subfamily. 100.0 2.4E-30 5.3E-35 185.7 18.7 163 12-178 2-167 (169)
87 cd04143 Rhes_like Rhes_like su 100.0 2.1E-30 4.6E-35 195.7 19.1 160 15-176 1-170 (247)
88 cd04139 RalA_RalB RalA/RalB su 100.0 4.3E-30 9.3E-35 183.3 19.6 163 15-178 1-163 (164)
89 KOG0097 GTPase Rab14, small G 100.0 1.7E-30 3.6E-35 172.7 16.0 169 12-182 9-178 (215)
90 cd04147 Ras_dva Ras-dva subfam 100.0 4.2E-30 9.1E-35 189.0 19.2 168 16-184 1-170 (198)
91 cd04129 Rho2 Rho2 subfamily. 100.0 3.1E-29 6.7E-34 182.8 20.6 163 15-180 2-176 (187)
92 cd04114 Rab30 Rab30 subfamily. 100.0 4E-29 8.7E-34 179.3 20.8 163 12-176 5-168 (169)
93 cd04158 ARD1 ARD1 subfamily. 100.0 7.9E-30 1.7E-34 183.1 17.0 160 16-182 1-166 (169)
94 cd01870 RhoA_like RhoA-like su 100.0 2.7E-29 5.8E-34 181.3 19.6 159 15-176 2-174 (175)
95 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 4.3E-30 9.4E-35 186.7 15.5 167 14-183 3-176 (183)
96 cd04149 Arf6 Arf6 subfamily. 100.0 5.5E-30 1.2E-34 183.7 15.6 155 13-174 8-167 (168)
97 PLN00223 ADP-ribosylation fact 100.0 1.2E-29 2.6E-34 184.0 17.0 161 12-179 15-180 (181)
98 cd04137 RheB Rheb (Ras Homolog 100.0 3.7E-29 8E-34 181.4 19.6 165 15-181 2-167 (180)
99 cd00154 Rab Rab family. Rab G 100.0 3.3E-29 7.1E-34 177.4 18.6 157 15-173 1-158 (159)
100 cd00157 Rho Rho (Ras homology) 100.0 3.8E-29 8.1E-34 179.7 19.1 158 15-174 1-170 (171)
101 cd00876 Ras Ras family. The R 100.0 4.1E-29 8.9E-34 177.5 18.2 159 16-175 1-159 (160)
102 smart00177 ARF ARF-like small 100.0 6.2E-30 1.4E-34 184.6 13.9 158 12-176 11-173 (175)
103 cd04150 Arf1_5_like Arf1-Arf5- 100.0 4.7E-30 1E-34 182.5 12.8 153 15-174 1-158 (159)
104 KOG0393 Ras-related small GTPa 100.0 1.6E-29 3.4E-34 180.4 13.9 168 12-181 2-183 (198)
105 PTZ00133 ADP-ribosylation fact 100.0 1.5E-29 3.2E-34 183.7 13.8 162 12-180 15-181 (182)
106 cd01893 Miro1 Miro1 subfamily. 100.0 1.2E-28 2.6E-33 176.5 18.3 161 15-178 1-165 (166)
107 cd04154 Arl2 Arl2 subfamily. 100.0 4.3E-29 9.4E-34 179.9 15.8 158 10-174 10-172 (173)
108 KOG0395 Ras-related GTPase [Ge 100.0 9.6E-29 2.1E-33 179.9 17.3 169 13-182 2-170 (196)
109 KOG0083 GTPase Rab26/Rab37, sm 100.0 2.5E-30 5.3E-35 170.1 5.8 163 19-183 2-166 (192)
110 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 7.5E-29 1.6E-33 177.1 11.8 151 17-174 2-163 (164)
111 PTZ00132 GTP-binding nuclear p 100.0 6.1E-27 1.3E-31 174.4 20.9 173 9-186 4-177 (215)
112 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 8.8E-28 1.9E-32 173.3 15.7 155 13-174 14-173 (174)
113 cd04102 RabL3 RabL3 (Rab-like3 100.0 4E-27 8.6E-32 172.6 18.6 148 15-163 1-176 (202)
114 PF00025 Arf: ADP-ribosylation 100.0 1.3E-27 2.9E-32 172.3 15.7 159 11-176 11-175 (175)
115 cd04156 ARLTS1 ARLTS1 subfamil 100.0 8.9E-28 1.9E-32 170.9 13.8 153 16-174 1-159 (160)
116 cd00879 Sar1 Sar1 subfamily. 100.0 1.8E-27 3.8E-32 174.0 15.4 156 13-175 18-189 (190)
117 cd04161 Arl2l1_Arl13_like Arl2 100.0 6.9E-28 1.5E-32 172.7 12.6 154 16-174 1-166 (167)
118 cd04151 Arl1 Arl1 subfamily. 100.0 8.8E-28 1.9E-32 170.6 12.7 152 16-174 1-157 (158)
119 KOG0073 GTP-binding ADP-ribosy 100.0 2.5E-27 5.4E-32 161.1 13.9 165 9-178 11-179 (185)
120 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.7E-27 3.8E-32 169.0 13.9 152 16-174 1-157 (158)
121 cd04157 Arl6 Arl6 subfamily. 100.0 2E-27 4.2E-32 169.3 13.0 152 16-174 1-161 (162)
122 KOG4252 GTP-binding protein [S 100.0 2.3E-29 5E-34 173.5 2.5 180 9-191 15-196 (246)
123 smart00178 SAR Sar1p-like memb 100.0 7.5E-27 1.6E-31 169.8 15.3 157 12-175 15-183 (184)
124 cd04160 Arfrp1 Arfrp1 subfamil 99.9 7.1E-27 1.5E-31 167.3 13.4 152 16-174 1-166 (167)
125 PTZ00099 rab6; Provisional 99.9 7.4E-26 1.6E-30 163.0 18.5 143 38-182 4-147 (176)
126 PLN00023 GTP-binding protein; 99.9 1.9E-25 4.2E-30 171.4 17.3 143 9-152 16-189 (334)
127 cd04155 Arl3 Arl3 subfamily. 99.9 3.1E-25 6.7E-30 159.7 16.4 158 10-174 10-172 (173)
128 cd01897 NOG NOG1 is a nucleola 99.9 6.2E-25 1.3E-29 157.4 16.3 155 16-176 2-167 (168)
129 cd01890 LepA LepA subfamily. 99.9 4E-25 8.6E-30 160.0 15.1 153 16-176 2-176 (179)
130 KOG0070 GTP-binding ADP-ribosy 99.9 2.3E-25 5E-30 155.3 11.8 162 11-179 14-180 (181)
131 cd04159 Arl10_like Arl10-like 99.9 4.1E-25 8.8E-30 156.4 13.4 151 17-174 2-158 (159)
132 cd01898 Obg Obg subfamily. Th 99.9 7.1E-25 1.5E-29 157.3 13.8 156 16-175 2-169 (170)
133 PRK12299 obgE GTPase CgtA; Rev 99.9 1.7E-24 3.6E-29 169.7 16.9 165 14-180 158-331 (335)
134 KOG3883 Ras family small GTPas 99.9 5.8E-24 1.3E-28 143.2 16.0 168 13-181 8-179 (198)
135 TIGR00231 small_GTP small GTP- 99.9 9.7E-24 2.1E-28 149.0 18.1 157 15-173 2-160 (161)
136 PRK15494 era GTPase Era; Provi 99.9 1.9E-24 4E-29 170.5 15.8 171 12-191 50-230 (339)
137 TIGR00436 era GTP-binding prot 99.9 2.3E-24 5E-29 165.5 15.6 166 16-189 2-176 (270)
138 TIGR02528 EutP ethanolamine ut 99.9 2.3E-24 4.9E-29 150.4 12.7 134 16-173 2-141 (142)
139 cd01878 HflX HflX subfamily. 99.9 4.9E-24 1.1E-28 157.5 14.8 156 12-176 39-204 (204)
140 COG1100 GTPase SAR1 and relate 99.9 4.1E-23 8.9E-28 154.2 18.4 169 14-183 5-191 (219)
141 KOG0071 GTP-binding ADP-ribosy 99.9 1.2E-23 2.7E-28 139.6 13.5 158 13-177 16-178 (180)
142 PRK04213 GTP-binding protein; 99.9 4.6E-24 1E-28 157.3 12.6 155 11-178 6-193 (201)
143 cd04171 SelB SelB subfamily. 99.9 1.2E-23 2.7E-28 149.9 13.7 153 16-174 2-163 (164)
144 cd00882 Ras_like_GTPase Ras-li 99.9 4.4E-23 9.5E-28 144.4 16.1 154 19-173 1-156 (157)
145 cd04164 trmE TrmE (MnmE, ThdF, 99.9 4.2E-23 9E-28 146.0 14.8 147 15-176 2-156 (157)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.2E-22 2.6E-27 145.4 16.2 156 16-177 2-166 (168)
147 PF02421 FeoB_N: Ferrous iron 99.9 7.2E-24 1.6E-28 147.8 8.7 148 15-172 1-156 (156)
148 PF08477 Miro: Miro-like prote 99.9 4.6E-23 9.9E-28 139.5 12.1 114 16-131 1-119 (119)
149 cd01879 FeoB Ferrous iron tran 99.9 1E-22 2.3E-27 144.3 14.3 147 19-176 1-156 (158)
150 cd01881 Obg_like The Obg-like 99.9 3.6E-23 7.9E-28 149.2 11.8 155 19-175 1-175 (176)
151 TIGR02729 Obg_CgtA Obg family 99.9 1.5E-22 3.2E-27 158.6 15.4 160 14-176 157-328 (329)
152 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.1E-22 4.6E-27 163.3 16.6 152 12-179 201-362 (442)
153 cd01891 TypA_BipA TypA (tyrosi 99.9 1E-22 2.2E-27 149.3 13.3 158 15-178 3-189 (194)
154 PRK03003 GTP-binding protein D 99.9 1.3E-22 2.9E-27 166.8 14.8 155 13-178 37-200 (472)
155 cd01894 EngA1 EngA1 subfamily. 99.9 1.2E-22 2.5E-27 143.7 12.6 145 18-175 1-156 (157)
156 PRK00089 era GTPase Era; Revie 99.9 3.1E-22 6.7E-27 155.6 15.9 168 13-186 4-180 (292)
157 KOG1673 Ras GTPases [General f 99.9 1.2E-22 2.6E-27 137.1 11.3 173 12-187 18-196 (205)
158 TIGR03594 GTPase_EngA ribosome 99.9 6.7E-22 1.5E-26 161.5 18.0 164 12-182 170-349 (429)
159 PRK03003 GTP-binding protein D 99.9 1.8E-22 3.8E-27 166.1 14.7 163 12-182 209-387 (472)
160 PRK05291 trmE tRNA modificatio 99.9 2E-22 4.3E-27 164.3 14.1 148 13-178 214-371 (449)
161 TIGR03156 GTP_HflX GTP-binding 99.9 3.4E-22 7.5E-27 157.9 14.7 153 13-175 188-350 (351)
162 PRK12297 obgE GTPase CgtA; Rev 99.9 2.2E-21 4.9E-26 155.8 18.1 162 15-182 159-332 (424)
163 KOG0074 GTP-binding ADP-ribosy 99.9 1.3E-22 2.8E-27 134.9 9.0 159 11-175 14-177 (185)
164 cd04163 Era Era subfamily. Er 99.9 1.6E-21 3.5E-26 139.0 15.1 156 14-175 3-167 (168)
165 COG1159 Era GTPase [General fu 99.9 5.8E-22 1.3E-26 148.6 12.8 173 13-191 5-186 (298)
166 cd01895 EngA2 EngA2 subfamily. 99.9 2.4E-21 5.3E-26 139.0 15.6 154 14-175 2-173 (174)
167 cd00881 GTP_translation_factor 99.9 1.3E-21 2.9E-26 142.5 14.3 155 16-176 1-186 (189)
168 KOG0075 GTP-binding ADP-ribosy 99.9 4E-22 8.7E-27 133.4 10.1 157 13-176 19-181 (186)
169 PRK12296 obgE GTPase CgtA; Rev 99.9 1.5E-21 3.3E-26 158.6 15.4 167 13-182 158-345 (500)
170 PRK15467 ethanolamine utilizat 99.9 1.4E-21 3.1E-26 138.5 13.1 140 16-178 3-148 (158)
171 TIGR01393 lepA GTP-binding pro 99.9 4.9E-21 1.1E-25 160.5 17.8 158 14-179 3-182 (595)
172 cd01889 SelB_euk SelB subfamil 99.9 2.6E-21 5.5E-26 141.7 13.7 159 15-179 1-188 (192)
173 KOG0072 GTP-binding ADP-ribosy 99.9 2E-22 4.3E-27 134.4 6.6 163 12-179 16-181 (182)
174 cd01888 eIF2_gamma eIF2-gamma 99.9 5E-21 1.1E-25 141.2 14.4 160 15-178 1-200 (203)
175 PRK12298 obgE GTPase CgtA; Rev 99.9 5.9E-21 1.3E-25 152.5 15.8 171 15-188 160-344 (390)
176 TIGR03594 GTPase_EngA ribosome 99.9 4.9E-21 1.1E-25 156.4 15.1 153 16-179 1-162 (429)
177 cd04105 SR_beta Signal recogni 99.9 1.1E-20 2.5E-25 139.2 15.4 119 16-134 2-123 (203)
178 PRK00454 engB GTP-binding prot 99.9 1.7E-20 3.6E-25 137.7 16.3 159 10-177 20-194 (196)
179 TIGR00487 IF-2 translation ini 99.9 2.1E-20 4.5E-25 156.1 18.3 154 11-174 84-247 (587)
180 PRK11058 GTPase HflX; Provisio 99.9 8.5E-21 1.9E-25 153.2 14.4 158 14-179 197-364 (426)
181 PRK00093 GTP-binding protein D 99.9 9.9E-21 2.2E-25 154.8 14.6 148 15-175 2-160 (435)
182 TIGR03598 GTPase_YsxC ribosome 99.9 1.5E-20 3.3E-25 136.1 13.7 148 10-166 14-179 (179)
183 PRK00093 GTP-binding protein D 99.9 2.6E-20 5.6E-25 152.4 16.1 161 12-180 171-347 (435)
184 CHL00189 infB translation init 99.9 3.4E-20 7.5E-25 157.1 17.0 157 11-176 241-409 (742)
185 PRK09518 bifunctional cytidyla 99.9 2.7E-20 5.8E-25 159.8 16.5 156 12-178 273-437 (712)
186 cd00880 Era_like Era (E. coli 99.8 2.3E-20 5E-25 131.8 12.1 151 19-175 1-162 (163)
187 TIGR00475 selB selenocysteine- 99.8 4.6E-20 1E-24 154.5 15.8 155 15-180 1-169 (581)
188 PRK05306 infB translation init 99.8 8.4E-20 1.8E-24 156.0 17.2 154 11-175 287-450 (787)
189 PRK09518 bifunctional cytidyla 99.8 3E-20 6.4E-25 159.6 14.4 160 13-182 449-626 (712)
190 PRK09554 feoB ferrous iron tra 99.8 1.5E-19 3.2E-24 155.1 17.6 153 14-176 3-167 (772)
191 COG1160 Predicted GTPases [Gen 99.8 2.9E-20 6.2E-25 146.8 12.1 152 15-177 4-165 (444)
192 PF00009 GTP_EFTU: Elongation 99.8 3.4E-20 7.3E-25 135.3 11.6 158 13-176 2-186 (188)
193 KOG0076 GTP-binding ADP-ribosy 99.8 7.3E-21 1.6E-25 130.9 7.4 164 11-179 14-189 (197)
194 PRK05433 GTP-binding protein L 99.8 1.2E-19 2.6E-24 152.3 16.2 159 13-179 6-186 (600)
195 TIGR00437 feoB ferrous iron tr 99.8 9.1E-20 2E-24 152.9 14.7 144 21-176 1-154 (591)
196 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 5.4E-20 1.2E-24 128.4 10.4 171 12-187 8-179 (216)
197 PRK12317 elongation factor 1-a 99.8 2.3E-19 4.9E-24 146.2 14.8 156 11-169 3-197 (425)
198 COG0486 ThdF Predicted GTPase 99.8 2.7E-19 5.9E-24 141.7 14.0 155 13-179 216-378 (454)
199 COG1160 Predicted GTPases [Gen 99.8 3.5E-19 7.7E-24 140.7 14.3 164 13-182 177-356 (444)
200 KOG4423 GTP-binding protein-li 99.8 9.7E-22 2.1E-26 136.7 -0.4 177 11-188 22-205 (229)
201 cd01896 DRG The developmentall 99.8 1.6E-18 3.4E-23 130.2 15.8 151 16-176 2-225 (233)
202 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.1E-19 6.6E-24 132.2 11.3 148 16-168 1-185 (208)
203 TIGR00483 EF-1_alpha translati 99.8 8.3E-19 1.8E-23 142.9 14.8 156 11-169 4-199 (426)
204 PF10662 PduV-EutP: Ethanolami 99.8 1.3E-18 2.8E-23 118.8 12.4 136 15-173 2-142 (143)
205 TIGR03680 eif2g_arch translati 99.8 1.7E-18 3.7E-23 140.0 14.5 161 13-177 3-196 (406)
206 TIGR00491 aIF-2 translation in 99.8 1.8E-18 3.9E-23 144.3 14.1 154 14-176 4-215 (590)
207 KOG1423 Ras-like GTPase ERA [C 99.8 1.8E-18 4E-23 129.7 12.4 178 9-191 67-285 (379)
208 PRK10218 GTP-binding protein; 99.8 6.5E-18 1.4E-22 141.5 16.9 161 13-179 4-197 (607)
209 cd01876 YihA_EngB The YihA (En 99.8 4E-18 8.8E-23 121.6 13.3 151 16-175 1-169 (170)
210 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.1E-17 2.3E-22 122.3 15.5 147 14-166 2-172 (195)
211 PRK04000 translation initiatio 99.8 4.6E-18 9.9E-23 137.5 14.6 164 11-178 6-202 (411)
212 COG2229 Predicted GTPase [Gene 99.8 2.4E-17 5.3E-22 115.1 15.2 159 10-175 6-176 (187)
213 TIGR01394 TypA_BipA GTP-bindin 99.8 8.8E-18 1.9E-22 140.8 15.3 158 16-179 3-193 (594)
214 KOG1707 Predicted Ras related/ 99.8 1.4E-18 3E-23 140.0 9.6 171 12-183 7-181 (625)
215 COG0218 Predicted GTPase [Gene 99.8 2.6E-17 5.6E-22 117.4 14.8 160 9-178 19-198 (200)
216 PRK04004 translation initiatio 99.8 1.3E-17 2.8E-22 139.7 15.4 156 12-176 4-217 (586)
217 cd04168 TetM_like Tet(M)-like 99.8 9.9E-18 2.1E-22 126.1 12.9 112 16-133 1-129 (237)
218 PRK10512 selenocysteinyl-tRNA- 99.8 1.9E-17 4.1E-22 139.4 15.0 156 16-178 2-167 (614)
219 COG0370 FeoB Fe2+ transport sy 99.8 1.2E-17 2.6E-22 137.6 13.3 157 14-180 3-167 (653)
220 cd01883 EF1_alpha Eukaryotic e 99.8 5.9E-18 1.3E-22 126.2 10.4 147 16-166 1-194 (219)
221 PRK12736 elongation factor Tu; 99.8 4.4E-17 9.4E-22 131.4 15.7 161 11-177 9-201 (394)
222 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 2.1E-17 4.5E-22 122.8 12.1 174 16-191 1-190 (232)
223 cd04167 Snu114p Snu114p subfam 99.7 2.6E-17 5.5E-22 122.4 12.4 112 16-133 2-136 (213)
224 KOG0077 Vesicle coat complex C 99.7 5.6E-18 1.2E-22 115.9 7.3 158 13-175 19-191 (193)
225 KOG1489 Predicted GTP-binding 99.7 5.8E-17 1.3E-21 122.2 13.3 158 13-175 195-365 (366)
226 TIGR00485 EF-Tu translation el 99.7 7.7E-17 1.7E-21 130.1 14.8 148 10-163 8-179 (394)
227 PRK12735 elongation factor Tu; 99.7 1.2E-16 2.6E-21 128.9 15.9 161 10-176 8-202 (396)
228 cd04104 p47_IIGP_like p47 (47- 99.7 1.5E-16 3.3E-21 116.8 13.2 160 14-182 1-189 (197)
229 CHL00071 tufA elongation facto 99.7 3.2E-16 6.9E-21 126.9 15.7 149 10-164 8-180 (409)
230 cd04165 GTPBP1_like GTPBP1-lik 99.7 5.1E-16 1.1E-20 115.8 14.6 152 16-173 1-219 (224)
231 cd04169 RF3 RF3 subfamily. Pe 99.7 5.5E-16 1.2E-20 118.5 13.9 115 15-135 3-138 (267)
232 cd01850 CDC_Septin CDC/Septin. 99.7 1.2E-15 2.6E-20 117.2 15.8 143 13-161 3-186 (276)
233 COG2262 HflX GTPases [General 99.7 1E-15 2.3E-20 119.5 15.0 163 12-183 190-362 (411)
234 PRK05124 cysN sulfate adenylyl 99.7 5.7E-16 1.2E-20 127.2 13.4 153 11-168 24-216 (474)
235 COG1084 Predicted GTPase [Gene 99.7 1.2E-15 2.7E-20 115.9 13.7 157 13-176 167-335 (346)
236 cd04170 EF-G_bact Elongation f 99.7 2.2E-16 4.8E-21 121.3 9.2 151 16-174 1-170 (268)
237 PRK00741 prfC peptide chain re 99.7 7.8E-16 1.7E-20 127.6 12.9 117 11-133 7-144 (526)
238 TIGR02034 CysN sulfate adenyly 99.7 6.5E-16 1.4E-20 125.0 12.2 148 15-167 1-187 (406)
239 cd01885 EF2 EF2 (for archaea a 99.7 2.1E-15 4.5E-20 112.1 13.7 112 16-133 2-138 (222)
240 PRK00049 elongation factor Tu; 99.7 3.8E-15 8.2E-20 120.2 16.3 160 10-175 8-201 (396)
241 cd01886 EF-G Elongation factor 99.7 7.2E-16 1.6E-20 118.0 11.5 113 16-134 1-130 (270)
242 PLN03126 Elongation factor Tu; 99.7 2.8E-15 6.1E-20 122.8 15.3 148 11-164 78-249 (478)
243 PF01926 MMR_HSR1: 50S ribosom 99.7 6E-16 1.3E-20 104.1 9.5 105 16-129 1-116 (116)
244 COG1163 DRG Predicted GTPase [ 99.7 4E-15 8.7E-20 112.8 14.7 155 13-176 62-288 (365)
245 PLN03127 Elongation factor Tu; 99.7 6.6E-15 1.4E-19 120.0 16.6 160 12-177 59-252 (447)
246 PLN00043 elongation factor 1-a 99.7 2.4E-15 5.1E-20 122.7 13.6 150 12-167 5-203 (447)
247 COG0532 InfB Translation initi 99.7 4.9E-15 1.1E-19 119.3 14.5 158 13-179 4-172 (509)
248 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 9.7E-15 2.1E-19 107.2 14.6 161 15-180 1-187 (196)
249 KOG1191 Mitochondrial GTPase [ 99.6 1.1E-15 2.3E-20 121.5 9.7 167 12-180 266-453 (531)
250 PRK13351 elongation factor G; 99.6 3.3E-15 7.1E-20 128.5 13.6 118 11-134 5-139 (687)
251 KOG0462 Elongation factor-type 99.6 5.2E-15 1.1E-19 118.9 13.4 169 10-184 56-242 (650)
252 PTZ00141 elongation factor 1- 99.6 6.8E-15 1.5E-19 120.1 14.3 151 12-167 5-203 (446)
253 PF09439 SRPRB: Signal recogni 99.6 4.4E-16 9.6E-21 111.0 6.3 119 14-135 3-127 (181)
254 PRK05506 bifunctional sulfate 99.6 7.9E-15 1.7E-19 124.9 14.1 152 11-167 21-211 (632)
255 COG0536 Obg Predicted GTPase [ 99.6 1.6E-14 3.5E-19 110.4 13.4 162 15-180 160-336 (369)
256 cd01899 Ygr210 Ygr210 subfamil 99.6 1.2E-14 2.5E-19 113.4 12.7 60 120-183 214-275 (318)
257 PTZ00327 eukaryotic translatio 99.6 2.6E-14 5.5E-19 116.5 13.7 163 12-178 32-234 (460)
258 KOG1145 Mitochondrial translat 99.6 5E-14 1.1E-18 113.3 14.5 158 6-175 145-314 (683)
259 TIGR00503 prfC peptide chain r 99.6 4.1E-15 8.9E-20 123.3 8.6 120 10-135 7-147 (527)
260 PRK12739 elongation factor G; 99.6 6.4E-14 1.4E-18 120.4 15.3 118 11-134 5-139 (691)
261 TIGR00484 EF-G translation elo 99.6 4.8E-14 1E-18 121.2 13.2 119 11-135 7-142 (689)
262 COG5256 TEF1 Translation elong 99.6 3.8E-14 8.3E-19 110.9 11.2 155 11-167 4-201 (428)
263 KOG0090 Signal recognition par 99.6 7.1E-14 1.5E-18 100.0 10.9 157 14-175 38-237 (238)
264 COG4917 EutP Ethanolamine util 99.6 4E-14 8.8E-19 92.7 8.8 137 15-174 2-143 (148)
265 PRK09602 translation-associate 99.6 1.8E-13 3.9E-18 109.9 14.5 168 15-186 2-280 (396)
266 PRK09866 hypothetical protein; 99.5 5.2E-13 1.1E-17 110.5 17.1 109 62-174 230-350 (741)
267 KOG3905 Dynein light intermedi 99.5 1.8E-13 4E-18 103.9 13.4 164 14-179 52-292 (473)
268 COG3596 Predicted GTPase [Gene 99.5 5.4E-14 1.2E-18 104.7 10.1 162 11-178 36-223 (296)
269 COG0481 LepA Membrane GTPase L 99.5 1.3E-13 2.8E-18 109.4 12.6 160 13-180 8-189 (603)
270 PF05783 DLIC: Dynein light in 99.5 4.2E-13 9.2E-18 109.2 15.1 168 13-182 24-269 (472)
271 TIGR00991 3a0901s02IAP34 GTP-b 99.5 5.7E-13 1.2E-17 102.4 13.0 122 11-135 35-168 (313)
272 PRK12740 elongation factor G; 99.5 2.2E-13 4.9E-18 117.0 11.4 108 20-133 1-125 (668)
273 KOG1532 GTPase XAB1, interacts 99.5 4.4E-14 9.6E-19 104.9 6.0 178 9-190 14-277 (366)
274 PF04548 AIG1: AIG1 family; I 99.5 4.5E-13 9.7E-18 99.4 11.5 163 15-181 1-190 (212)
275 cd01853 Toc34_like Toc34-like 99.5 5.6E-13 1.2E-17 100.8 12.2 126 9-135 26-164 (249)
276 cd00066 G-alpha G protein alph 99.5 8.2E-13 1.8E-17 103.6 12.8 119 60-179 159-313 (317)
277 PRK00007 elongation factor G; 99.5 1E-12 2.2E-17 113.0 14.1 120 11-136 7-143 (693)
278 KOG1707 Predicted Ras related/ 99.4 5.8E-12 1.3E-16 102.3 15.3 166 8-180 419-586 (625)
279 PRK13768 GTPase; Provisional 99.4 1.3E-12 2.8E-17 99.4 10.9 115 63-178 98-248 (253)
280 TIGR00490 aEF-2 translation el 99.4 3.6E-13 7.7E-18 116.2 8.8 116 12-133 17-151 (720)
281 COG5257 GCD11 Translation init 99.4 8.1E-13 1.8E-17 100.3 8.6 190 12-205 8-230 (415)
282 smart00275 G_alpha G protein a 99.4 5.8E-12 1.2E-16 99.6 13.5 118 61-179 183-336 (342)
283 PRK14845 translation initiatio 99.4 5E-12 1.1E-16 111.2 14.2 142 26-176 473-672 (1049)
284 PTZ00258 GTP-binding protein; 99.4 7.6E-12 1.6E-16 99.7 13.3 84 12-96 19-126 (390)
285 TIGR00101 ureG urease accessor 99.4 6.2E-12 1.3E-16 92.2 11.9 102 62-176 92-195 (199)
286 COG2895 CysN GTPases - Sulfate 99.4 5.2E-12 1.1E-16 97.1 11.2 152 11-167 3-193 (431)
287 KOG0461 Selenocysteine-specifi 99.4 2.4E-11 5.1E-16 93.3 14.2 163 13-181 6-197 (522)
288 KOG1490 GTP-binding protein CR 99.4 1.1E-12 2.3E-17 104.9 7.2 165 12-180 166-344 (620)
289 TIGR00157 ribosome small subun 99.4 5.7E-12 1.2E-16 95.4 10.1 96 73-174 24-120 (245)
290 smart00010 small_GTPase Small 99.4 3.1E-12 6.7E-17 86.7 7.8 115 15-166 1-115 (124)
291 TIGR02836 spore_IV_A stage IV 99.3 4.7E-11 1E-15 94.5 14.0 156 13-174 16-234 (492)
292 PTZ00416 elongation factor 2; 99.3 5.9E-12 1.3E-16 110.1 9.5 117 11-133 16-157 (836)
293 PLN00116 translation elongatio 99.3 6.2E-12 1.3E-16 110.2 9.2 118 10-133 15-163 (843)
294 TIGR00073 hypB hydrogenase acc 99.3 3.3E-11 7.3E-16 89.1 11.6 151 12-175 20-205 (207)
295 PRK09435 membrane ATPase/prote 99.3 2.5E-11 5.4E-16 95.0 10.5 104 61-177 148-260 (332)
296 COG1217 TypA Predicted membran 99.3 9.9E-11 2.1E-15 93.1 13.6 161 14-180 5-198 (603)
297 KOG0458 Elongation factor 1 al 99.3 5.9E-11 1.3E-15 96.6 12.1 155 10-168 173-373 (603)
298 PRK09601 GTP-binding protein Y 99.3 9.2E-11 2E-15 92.6 12.7 81 15-96 3-107 (364)
299 PF00735 Septin: Septin; Inte 99.3 8.8E-11 1.9E-15 90.4 12.2 142 13-160 3-184 (281)
300 cd01882 BMS1 Bms1. Bms1 is an 99.3 1.6E-10 3.5E-15 86.5 13.3 138 12-163 37-182 (225)
301 PF03029 ATP_bind_1: Conserved 99.3 4.8E-12 1E-16 95.2 4.3 113 63-176 92-236 (238)
302 PF05049 IIGP: Interferon-indu 99.3 4.7E-11 1E-15 94.3 9.9 161 12-181 33-222 (376)
303 KOG0705 GTPase-activating prot 99.2 3.6E-11 7.9E-16 97.1 8.5 173 1-180 17-192 (749)
304 KOG1486 GTP-binding protein DR 99.2 6.5E-10 1.4E-14 82.0 14.0 159 13-172 61-232 (364)
305 PRK07560 elongation factor EF- 99.2 8.2E-11 1.8E-15 102.0 10.3 117 11-133 17-152 (731)
306 PF00350 Dynamin_N: Dynamin fa 99.2 9.8E-11 2.1E-15 83.7 8.7 63 63-130 102-168 (168)
307 COG4108 PrfC Peptide chain rel 99.2 9E-11 2E-15 92.7 8.7 122 9-136 7-149 (528)
308 KOG0082 G-protein alpha subuni 99.2 5.3E-10 1.1E-14 87.3 12.9 127 52-179 185-346 (354)
309 TIGR00750 lao LAO/AO transport 99.2 1.9E-10 4.2E-15 89.7 10.3 103 61-176 126-237 (300)
310 KOG1144 Translation initiation 99.2 2.2E-10 4.8E-15 95.5 10.5 162 12-179 473-689 (1064)
311 TIGR00993 3a0901s04IAP86 chlor 99.2 4.3E-10 9.3E-15 93.8 11.6 122 10-134 114-250 (763)
312 COG0378 HypB Ni2+-binding GTPa 99.2 5.5E-10 1.2E-14 79.6 10.1 149 14-176 13-200 (202)
313 COG0480 FusA Translation elong 99.1 4.4E-10 9.5E-15 95.7 10.8 118 11-134 7-142 (697)
314 PF03308 ArgK: ArgK protein; 99.1 7.8E-11 1.7E-15 87.8 4.7 149 13-175 28-228 (266)
315 smart00053 DYNc Dynamin, GTPas 99.1 1.5E-09 3.2E-14 81.5 11.4 69 62-135 125-207 (240)
316 KOG3887 Predicted small GTPase 99.1 4.5E-10 9.8E-15 82.4 8.2 176 14-191 27-216 (347)
317 KOG3886 GTP-binding protein [S 99.1 1.7E-10 3.7E-15 83.9 5.6 168 13-182 3-183 (295)
318 COG0012 Predicted GTPase, prob 99.1 3.3E-09 7.1E-14 82.9 12.3 84 14-97 2-109 (372)
319 COG1703 ArgK Putative periplas 99.1 1.9E-09 4.2E-14 81.7 10.7 151 13-176 50-253 (323)
320 COG3276 SelB Selenocysteine-sp 99.1 4.4E-09 9.5E-14 83.5 12.6 156 16-177 2-162 (447)
321 PF00503 G-alpha: G-protein al 99.0 4.3E-09 9.4E-14 85.2 12.5 116 60-176 234-389 (389)
322 KOG1954 Endocytosis/signaling 99.0 2.3E-09 5.1E-14 83.2 10.2 130 2-136 46-227 (532)
323 KOG0468 U5 snRNP-specific prot 99.0 2.3E-09 5E-14 88.7 10.0 117 10-132 124-261 (971)
324 PRK10463 hydrogenase nickel in 99.0 1.6E-09 3.6E-14 82.9 8.2 56 120-175 230-287 (290)
325 KOG0410 Predicted GTP binding 99.0 4.2E-10 9.1E-15 85.8 4.6 153 12-180 176-344 (410)
326 cd01855 YqeH YqeH. YqeH is an 99.0 3.5E-09 7.5E-14 77.3 9.1 99 75-182 24-130 (190)
327 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1.2E-09 2.6E-14 75.9 6.3 54 16-72 85-138 (141)
328 KOG2655 Septin family protein 99.0 1.7E-08 3.8E-13 79.0 13.3 156 14-178 21-215 (366)
329 cd04178 Nucleostemin_like Nucl 99.0 1.5E-09 3.2E-14 77.8 6.5 56 13-71 116-171 (172)
330 cd01900 YchF YchF subfamily. 99.0 1.3E-09 2.8E-14 83.4 6.1 79 17-96 1-103 (274)
331 cd01858 NGP_1 NGP-1. Autoanti 99.0 2.5E-09 5.5E-14 75.6 7.1 56 13-71 101-156 (157)
332 COG5019 CDC3 Septin family pro 98.9 2E-08 4.4E-13 78.2 12.1 138 13-156 22-200 (373)
333 cd01859 MJ1464 MJ1464. This f 98.9 2.9E-09 6.3E-14 75.2 6.9 95 76-178 3-97 (156)
334 PRK00098 GTPase RsgA; Reviewed 98.9 6.4E-09 1.4E-13 81.1 9.3 88 81-173 76-163 (298)
335 KOG1547 Septin CDC10 and relat 98.9 2.1E-08 4.6E-13 73.7 11.2 152 13-170 45-236 (336)
336 PRK12289 GTPase RsgA; Reviewed 98.9 1.4E-08 3.1E-13 80.5 9.4 92 78-175 82-173 (352)
337 cd01854 YjeQ_engC YjeQ/EngC. 98.9 2.1E-08 4.6E-13 77.8 9.3 89 79-174 72-161 (287)
338 COG0050 TufB GTPases - transla 98.8 5.1E-08 1.1E-12 73.8 10.2 161 11-180 9-204 (394)
339 cd01856 YlqF YlqF. Proteins o 98.8 1.2E-08 2.6E-13 73.2 6.6 57 13-72 114-170 (171)
340 PRK09563 rbgA GTPase YlqF; Rev 98.8 1.8E-08 3.8E-13 78.3 7.8 59 12-73 119-177 (287)
341 TIGR03596 GTPase_YlqF ribosome 98.8 1.4E-08 3.1E-13 78.3 7.3 58 12-72 116-173 (276)
342 KOG0448 Mitofusin 1 GTPase, in 98.8 8.6E-08 1.9E-12 79.9 11.8 145 12-162 107-311 (749)
343 PRK12288 GTPase RsgA; Reviewed 98.8 5.5E-08 1.2E-12 77.1 10.4 89 82-175 117-206 (347)
344 cd01859 MJ1464 MJ1464. This f 98.8 1.9E-08 4.1E-13 71.1 6.9 56 13-71 100-155 (156)
345 COG1161 Predicted GTPases [Gen 98.8 1.3E-08 2.8E-13 80.1 6.4 58 13-73 131-188 (322)
346 cd01855 YqeH YqeH. YqeH is an 98.7 2.6E-08 5.6E-13 72.8 5.7 55 14-71 127-189 (190)
347 KOG1487 GTP-binding protein DR 98.7 1.7E-07 3.7E-12 69.8 9.7 107 15-122 60-173 (358)
348 KOG0085 G protein subunit Galp 98.7 2E-08 4.2E-13 73.5 4.0 124 55-179 192-351 (359)
349 TIGR03597 GTPase_YqeH ribosome 98.7 1.4E-07 3E-12 75.6 9.1 95 72-175 50-151 (360)
350 cd01849 YlqF_related_GTPase Yl 98.7 5.8E-08 1.3E-12 68.5 6.2 57 12-71 98-154 (155)
351 KOG2486 Predicted GTPase [Gene 98.6 8.5E-08 1.8E-12 72.0 5.5 159 7-174 129-313 (320)
352 TIGR00092 GTP-binding protein 98.6 2.3E-07 5E-12 73.6 8.0 81 15-97 3-109 (368)
353 cd01851 GBP Guanylate-binding 98.6 1.6E-06 3.5E-11 64.9 11.5 91 12-103 5-109 (224)
354 PF09547 Spore_IV_A: Stage IV 98.6 1.8E-06 4E-11 68.8 12.0 156 13-174 16-234 (492)
355 cd01858 NGP_1 NGP-1. Autoanti 98.6 5.3E-07 1.1E-11 63.8 8.3 91 81-176 4-94 (157)
356 KOG0466 Translation initiation 98.6 8.3E-08 1.8E-12 73.0 4.3 167 12-186 36-250 (466)
357 PRK12289 GTPase RsgA; Reviewed 98.5 1.6E-07 3.4E-12 74.6 6.0 57 16-75 174-237 (352)
358 PRK12288 GTPase RsgA; Reviewed 98.5 1.7E-07 3.8E-12 74.3 6.1 58 16-76 207-271 (347)
359 cd01849 YlqF_related_GTPase Yl 98.5 6.4E-07 1.4E-11 63.2 8.3 84 87-176 1-84 (155)
360 KOG1491 Predicted GTP-binding 98.5 3.5E-07 7.6E-12 70.6 7.1 85 13-97 19-126 (391)
361 COG1618 Predicted nucleotide k 98.5 8.6E-06 1.9E-10 56.7 12.5 148 12-177 3-176 (179)
362 KOG1143 Predicted translation 98.5 2.2E-06 4.7E-11 67.2 10.7 151 12-168 165-379 (591)
363 COG5192 BMS1 GTP-binding prote 98.5 2.1E-06 4.6E-11 70.6 10.6 134 12-160 67-209 (1077)
364 PF03266 NTPase_1: NTPase; In 98.4 2.1E-06 4.5E-11 61.3 9.1 135 16-165 1-163 (168)
365 TIGR00157 ribosome small subun 98.4 4.3E-07 9.4E-12 68.9 5.7 57 15-75 121-184 (245)
366 TIGR03596 GTPase_YlqF ribosome 98.4 1.4E-06 3E-11 67.4 8.6 92 78-179 14-105 (276)
367 PF03193 DUF258: Protein of un 98.4 4E-07 8.7E-12 64.0 4.5 59 15-76 36-101 (161)
368 KOG0447 Dynamin-like GTP bindi 98.4 4.2E-06 9E-11 68.7 10.9 96 63-162 413-526 (980)
369 KOG0464 Elongation factor G [T 98.4 2.8E-07 6E-12 73.0 4.1 148 10-165 33-199 (753)
370 KOG0467 Translation elongation 98.4 1.4E-06 2.9E-11 73.7 8.0 115 9-132 4-136 (887)
371 KOG1424 Predicted GTP-binding 98.4 5.4E-07 1.2E-11 73.0 5.4 56 14-72 314-369 (562)
372 PRK13796 GTPase YqeH; Provisio 98.4 5.4E-07 1.2E-11 72.3 5.4 56 15-73 161-221 (365)
373 cd01856 YlqF YlqF. Proteins o 98.4 1.2E-06 2.6E-11 62.8 6.7 91 77-177 11-101 (171)
374 KOG0460 Mitochondrial translat 98.4 4.5E-06 9.8E-11 64.6 10.0 144 12-160 52-218 (449)
375 COG5258 GTPBP1 GTPase [General 98.4 5E-06 1.1E-10 65.4 10.4 165 9-180 112-341 (527)
376 TIGR03597 GTPase_YqeH ribosome 98.4 8.7E-07 1.9E-11 71.0 6.5 57 15-74 155-216 (360)
377 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 9.5E-07 2.1E-11 61.3 5.9 79 80-164 6-84 (141)
378 PRK10416 signal recognition pa 98.4 4.1E-06 8.8E-11 65.9 9.8 94 61-168 196-301 (318)
379 cd03112 CobW_like The function 98.3 3.2E-06 6.8E-11 59.9 7.4 65 61-132 86-158 (158)
380 TIGR00064 ftsY signal recognit 98.3 3.4E-06 7.3E-11 65.0 7.9 94 61-168 154-259 (272)
381 PRK09563 rbgA GTPase YlqF; Rev 98.3 3.7E-06 8E-11 65.4 7.9 100 69-178 7-107 (287)
382 KOG0099 G protein subunit Galp 98.3 2E-06 4.3E-11 64.3 5.9 73 60-132 200-281 (379)
383 KOG0463 GTP-binding protein GP 98.3 7.6E-06 1.6E-10 64.3 9.2 166 13-186 132-366 (641)
384 PRK14974 cell division protein 98.3 7.8E-06 1.7E-10 64.6 9.0 94 62-169 223-322 (336)
385 PRK00098 GTPase RsgA; Reviewed 98.2 2.9E-06 6.2E-11 66.3 6.4 57 15-74 165-228 (298)
386 PRK01889 GTPase RsgA; Reviewed 98.2 8.3E-06 1.8E-10 65.2 9.0 85 82-173 109-193 (356)
387 PRK13796 GTPase YqeH; Provisio 98.2 1E-05 2.2E-10 65.0 9.5 84 83-175 66-157 (365)
388 TIGR03348 VI_IcmF type VI secr 98.2 9.8E-06 2.1E-10 74.1 10.1 112 17-135 114-258 (1169)
389 cd01854 YjeQ_engC YjeQ/EngC. 98.2 3.2E-06 7E-11 65.7 6.1 58 15-75 162-226 (287)
390 KOG0459 Polypeptide release fa 98.2 3.1E-06 6.7E-11 66.9 5.3 160 10-170 75-279 (501)
391 KOG4273 Uncharacterized conser 98.2 4.9E-05 1.1E-09 56.7 11.0 158 14-178 4-223 (418)
392 KOG2484 GTPase [General functi 98.1 2E-06 4.3E-11 67.8 3.6 59 11-72 249-307 (435)
393 COG1162 Predicted GTPases [Gen 98.1 5.2E-06 1.1E-10 63.8 5.5 58 16-76 166-230 (301)
394 KOG3859 Septins (P-loop GTPase 98.1 1.7E-05 3.6E-10 60.0 7.7 118 13-136 41-192 (406)
395 TIGR01425 SRP54_euk signal rec 98.1 5.7E-05 1.2E-09 61.5 11.3 87 61-159 182-274 (429)
396 PRK13695 putative NTPase; Prov 98.0 0.00017 3.6E-09 51.9 11.7 80 82-176 93-172 (174)
397 KOG0465 Mitochondrial elongati 98.0 2E-05 4.3E-10 65.4 6.4 119 12-136 37-172 (721)
398 PRK14722 flhF flagellar biosyn 98.0 5.9E-05 1.3E-09 60.4 8.9 142 14-159 137-316 (374)
399 PF00448 SRP54: SRP54-type pro 98.0 5E-05 1.1E-09 55.7 7.8 86 62-159 84-175 (196)
400 COG1162 Predicted GTPases [Gen 97.9 0.00012 2.7E-09 56.4 10.0 93 78-174 72-164 (301)
401 COG0523 Putative GTPases (G3E 97.9 0.00021 4.4E-09 56.3 10.9 98 62-169 85-193 (323)
402 cd03114 ArgK-like The function 97.9 5.4E-05 1.2E-09 52.9 6.7 58 61-131 91-148 (148)
403 cd03115 SRP The signal recogni 97.9 7.3E-05 1.6E-09 53.6 7.5 82 62-155 83-170 (173)
404 PRK11889 flhF flagellar biosyn 97.8 8.5E-05 1.8E-09 59.6 7.8 86 62-159 321-412 (436)
405 PRK14721 flhF flagellar biosyn 97.8 0.00016 3.5E-09 58.8 8.9 135 13-160 190-362 (420)
406 PRK11537 putative GTP-binding 97.8 0.00044 9.6E-09 54.5 11.1 96 62-169 91-196 (318)
407 PF02492 cobW: CobW/HypB/UreG, 97.8 0.0001 2.2E-09 53.3 6.8 82 61-150 84-170 (178)
408 PRK00771 signal recognition pa 97.8 0.00066 1.4E-08 55.7 11.7 86 62-159 176-267 (437)
409 cd02038 FleN-like FleN is a me 97.7 0.00013 2.8E-09 50.4 6.3 107 18-133 4-110 (139)
410 PRK12727 flagellar biosynthesi 97.7 0.00048 1E-08 57.4 10.5 88 61-160 428-520 (559)
411 KOG2485 Conserved ATP/GTP bind 97.7 4.2E-05 9.1E-10 58.7 3.8 60 12-72 141-206 (335)
412 TIGR00959 ffh signal recogniti 97.7 0.00039 8.5E-09 56.9 9.4 86 62-159 183-274 (428)
413 PRK10867 signal recognition pa 97.6 0.00047 1E-08 56.5 9.4 86 62-159 184-275 (433)
414 COG3523 IcmF Type VI protein s 97.6 0.00017 3.6E-09 65.2 7.2 110 17-134 128-270 (1188)
415 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00047 1E-08 43.9 7.4 69 17-98 2-71 (99)
416 PF05621 TniB: Bacterial TniB 97.6 0.0002 4.3E-09 55.4 6.3 106 10-129 57-189 (302)
417 KOG0469 Elongation factor 2 [T 97.6 0.00032 7E-09 57.4 7.6 114 13-132 18-162 (842)
418 PF13207 AAA_17: AAA domain; P 97.6 6.2E-05 1.3E-09 50.5 3.1 22 16-37 1-22 (121)
419 COG1419 FlhF Flagellar GTP-bin 97.6 0.00068 1.5E-08 54.4 9.3 109 61-182 281-399 (407)
420 PRK05703 flhF flagellar biosyn 97.6 0.00089 1.9E-08 54.9 10.0 88 61-161 299-394 (424)
421 PRK08118 topology modulation p 97.5 7.4E-05 1.6E-09 53.4 3.1 23 15-37 2-24 (167)
422 cd00009 AAA The AAA+ (ATPases 97.5 0.00051 1.1E-08 47.1 7.3 25 15-39 20-44 (151)
423 PRK14737 gmk guanylate kinase; 97.5 7E-05 1.5E-09 54.4 2.9 24 15-38 5-28 (186)
424 PRK12726 flagellar biosynthesi 97.5 0.00068 1.5E-08 54.3 8.5 88 61-160 285-378 (407)
425 COG0563 Adk Adenylate kinase a 97.5 9.1E-05 2E-09 53.4 3.1 23 15-37 1-23 (178)
426 KOG2423 Nucleolar GTPase [Gene 97.5 3.8E-05 8.2E-10 60.8 1.0 85 10-100 303-389 (572)
427 PRK07261 topology modulation p 97.5 0.00011 2.3E-09 52.8 3.1 22 16-37 2-23 (171)
428 PRK14738 gmk guanylate kinase; 97.4 0.00015 3.2E-09 53.7 3.8 26 12-37 11-36 (206)
429 PRK12724 flagellar biosynthesi 97.4 0.00089 1.9E-08 54.4 8.4 133 14-159 223-394 (432)
430 PF06858 NOG1: Nucleolar GTP-b 97.4 0.00049 1.1E-08 39.3 5.0 44 85-131 13-58 (58)
431 PF13671 AAA_33: AAA domain; P 97.4 0.00011 2.4E-09 50.8 2.8 20 17-36 2-21 (143)
432 PRK14723 flhF flagellar biosyn 97.4 0.0016 3.4E-08 56.8 10.2 137 15-161 186-360 (767)
433 PRK12723 flagellar biosynthesi 97.4 0.0025 5.4E-08 51.6 10.5 87 61-159 254-347 (388)
434 COG0194 Gmk Guanylate kinase [ 97.4 7.9E-05 1.7E-09 53.3 1.5 48 15-63 5-52 (191)
435 PRK06731 flhF flagellar biosyn 97.4 0.0024 5.1E-08 49.2 9.6 86 61-159 154-246 (270)
436 cd02042 ParA ParA and ParB of 97.4 0.00082 1.8E-08 43.8 6.2 79 17-106 2-81 (104)
437 PF13555 AAA_29: P-loop contai 97.3 0.00023 4.9E-09 41.7 2.9 21 16-36 25-45 (62)
438 KOG1970 Checkpoint RAD17-RFC c 97.3 0.0016 3.5E-08 54.0 8.8 89 88-177 196-284 (634)
439 PRK04195 replication factor C 97.3 0.0028 6E-08 53.1 10.4 25 14-38 39-63 (482)
440 PF13521 AAA_28: AAA domain; P 97.3 0.00015 3.2E-09 51.5 2.5 22 16-37 1-22 (163)
441 PF00005 ABC_tran: ABC transpo 97.3 0.00023 4.9E-09 48.9 3.1 23 16-38 13-35 (137)
442 COG1116 TauB ABC-type nitrate/ 97.3 0.00027 5.9E-09 52.9 3.7 24 16-39 31-54 (248)
443 TIGR02475 CobW cobalamin biosy 97.3 0.0023 5E-08 51.1 9.2 21 17-37 7-27 (341)
444 cd02019 NK Nucleoside/nucleoti 97.3 0.00026 5.6E-09 42.6 2.9 21 17-37 2-22 (69)
445 COG1126 GlnQ ABC-type polar am 97.3 0.00036 7.8E-09 51.2 3.9 25 15-39 29-53 (240)
446 PF03215 Rad17: Rad17 cell cyc 97.3 0.0025 5.4E-08 53.5 9.4 23 16-38 47-69 (519)
447 COG1136 SalX ABC-type antimicr 97.2 0.00031 6.7E-09 52.2 3.4 25 16-40 33-57 (226)
448 COG3640 CooC CO dehydrogenase 97.2 0.0077 1.7E-07 44.9 10.4 49 79-133 149-198 (255)
449 PF11111 CENP-M: Centromere pr 97.2 0.039 8.5E-07 39.2 14.0 144 10-178 11-154 (176)
450 PF00004 AAA: ATPase family as 97.2 0.00036 7.8E-09 47.3 3.0 22 17-38 1-22 (132)
451 TIGR00150 HI0065_YjeE ATPase, 97.2 0.0014 3.1E-08 44.7 5.8 23 16-38 24-46 (133)
452 PRK06217 hypothetical protein; 97.2 0.00036 7.8E-09 50.6 3.1 23 15-37 2-24 (183)
453 PF13238 AAA_18: AAA domain; P 97.2 0.00036 7.8E-09 47.1 2.8 21 17-37 1-21 (129)
454 cd00071 GMPK Guanosine monopho 97.1 0.00047 1E-08 47.5 3.4 21 17-37 2-22 (137)
455 PF03205 MobB: Molybdopterin g 97.1 0.00042 9E-09 48.0 3.0 22 16-37 2-23 (140)
456 PRK10078 ribose 1,5-bisphospho 97.1 0.00042 9.2E-09 50.3 3.2 23 16-38 4-26 (186)
457 PRK03839 putative kinase; Prov 97.1 0.00044 9.6E-09 49.9 3.1 22 16-37 2-23 (180)
458 PRK01889 GTPase RsgA; Reviewed 97.1 0.00059 1.3E-08 54.7 4.1 25 15-39 196-220 (356)
459 TIGR03263 guanyl_kin guanylate 97.1 0.00062 1.3E-08 49.1 3.8 22 16-37 3-24 (180)
460 cd03111 CpaE_like This protein 97.1 0.0016 3.4E-08 42.8 5.4 99 21-129 7-106 (106)
461 smart00382 AAA ATPases associa 97.1 0.0005 1.1E-08 46.7 3.2 26 15-40 3-28 (148)
462 TIGR02322 phosphon_PhnN phosph 97.1 0.00042 9.1E-09 49.9 2.8 22 16-37 3-24 (179)
463 PRK14530 adenylate kinase; Pro 97.1 0.00046 1E-08 51.3 3.1 22 15-36 4-25 (215)
464 PF04665 Pox_A32: Poxvirus A32 97.1 0.00045 9.7E-09 52.0 2.9 27 11-37 10-36 (241)
465 COG3839 MalK ABC-type sugar tr 97.1 0.00045 9.6E-09 54.5 3.0 22 17-38 32-53 (338)
466 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00052 1.1E-08 45.0 2.8 21 15-35 16-36 (107)
467 PRK13949 shikimate kinase; Pro 97.1 0.00056 1.2E-08 48.9 3.1 22 16-37 3-24 (169)
468 TIGR00235 udk uridine kinase. 97.0 0.00066 1.4E-08 50.2 3.5 26 12-37 4-29 (207)
469 cd03222 ABC_RNaseL_inhibitor T 97.0 0.00082 1.8E-08 48.4 3.7 25 15-39 26-50 (177)
470 PRK05480 uridine/cytidine kina 97.0 0.00064 1.4E-08 50.3 3.3 25 13-37 5-29 (209)
471 COG1120 FepC ABC-type cobalami 97.0 0.00056 1.2E-08 51.9 2.9 21 16-36 30-50 (258)
472 cd02023 UMPK Uridine monophosp 97.0 0.00053 1.1E-08 50.3 2.8 21 17-37 2-22 (198)
473 COG0552 FtsY Signal recognitio 97.0 0.0061 1.3E-07 47.7 8.6 86 61-159 221-319 (340)
474 cd03110 Fer4_NifH_child This p 97.0 0.0093 2E-07 42.9 9.2 86 60-156 91-176 (179)
475 PF07728 AAA_5: AAA domain (dy 97.0 0.00063 1.4E-08 46.9 2.9 22 16-37 1-22 (139)
476 cd03238 ABC_UvrA The excision 97.0 0.00068 1.5E-08 48.8 3.1 22 14-35 21-42 (176)
477 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00062 1.3E-08 49.3 2.9 21 15-35 4-24 (188)
478 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.00069 1.5E-08 50.5 3.2 23 16-38 32-54 (218)
479 KOG3929 Uncharacterized conser 97.0 0.00029 6.3E-09 52.9 1.1 158 13-174 44-249 (363)
480 KOG0780 Signal recognition par 97.0 0.0017 3.6E-08 51.7 5.3 54 60-113 182-241 (483)
481 PRK10751 molybdopterin-guanine 97.0 0.00084 1.8E-08 48.0 3.3 25 13-37 5-29 (173)
482 cd02036 MinD Bacterial cell di 97.0 0.0099 2.1E-07 42.6 9.0 84 63-155 64-147 (179)
483 cd03225 ABC_cobalt_CbiO_domain 97.0 0.00077 1.7E-08 49.9 3.2 23 16-38 29-51 (211)
484 cd03226 ABC_cobalt_CbiO_domain 97.0 0.00077 1.7E-08 49.7 3.2 24 15-38 27-50 (205)
485 TIGR00960 3a0501s02 Type II (G 96.9 0.00077 1.7E-08 50.1 3.2 23 16-38 31-53 (216)
486 COG3638 ABC-type phosphate/pho 96.9 0.00073 1.6E-08 50.2 2.9 21 16-36 32-52 (258)
487 PRK08233 hypothetical protein; 96.9 0.00088 1.9E-08 48.3 3.3 23 15-37 4-26 (182)
488 cd01130 VirB11-like_ATPase Typ 96.9 0.00082 1.8E-08 48.9 3.1 24 14-37 25-48 (186)
489 cd03264 ABC_drug_resistance_li 96.9 0.00073 1.6E-08 50.1 2.9 23 16-38 27-49 (211)
490 COG3842 PotA ABC-type spermidi 96.9 0.00098 2.1E-08 52.9 3.7 24 17-40 34-57 (352)
491 cd03261 ABC_Org_Solvent_Resist 96.9 0.00082 1.8E-08 50.7 3.2 23 16-38 28-50 (235)
492 cd02025 PanK Pantothenate kina 96.9 0.00067 1.5E-08 50.7 2.7 21 17-37 2-22 (220)
493 TIGR01166 cbiO cobalt transpor 96.9 0.00087 1.9E-08 48.8 3.2 23 16-38 20-42 (190)
494 PRK14532 adenylate kinase; Pro 96.9 0.00084 1.8E-08 48.8 3.1 21 16-36 2-22 (188)
495 TIGR02673 FtsE cell division A 96.9 0.00086 1.9E-08 49.8 3.2 23 16-38 30-52 (214)
496 TIGR03608 L_ocin_972_ABC putat 96.9 0.00087 1.9E-08 49.4 3.2 23 16-38 26-48 (206)
497 cd03292 ABC_FtsE_transporter F 96.9 0.00086 1.9E-08 49.8 3.2 23 16-38 29-51 (214)
498 COG3840 ThiQ ABC-type thiamine 96.9 0.0011 2.3E-08 47.6 3.4 25 15-39 26-50 (231)
499 cd01131 PilT Pilus retraction 96.9 0.0027 5.9E-08 46.6 5.8 22 17-38 4-25 (198)
500 COG2884 FtsE Predicted ATPase 96.9 0.00087 1.9E-08 48.3 3.0 23 17-39 31-53 (223)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-42 Score=241.81 Aligned_cols=199 Identities=49% Similarity=0.843 Sum_probs=178.0
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
...++.|||+++|++|||||+|+.||+.+.|.+.+. |.|.++....+.+++..+.+++|||+|++.+++....++++++
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 345789999999999999999999999999998777 9999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEEccCCCCCHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQ 166 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~ 166 (210)
++|+|||+++.+||..+.. |+..++++. ..++|.++||||+|+.+.+.+..++++.++..++++ ++++||+++.+++
T Consensus 84 Gii~vyDiT~~~SF~~v~~-Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKR-WIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred eEEEEEEcccHHHhhhHHH-HHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence 9999999999999999999 999999876 446899999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329 167 QCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
+.|..|...+.++......... ...+..+.+..+..+..++||
T Consensus 162 ~~F~~la~~lk~~~~~~~~~~~-~~~~~~ql~~~p~~~~~~~~C 204 (205)
T KOG0084|consen 162 DAFLTLAKELKQRKGLHVKWST-ASLESVQLKGTPVKKSNGGCC 204 (205)
T ss_pred HHHHHHHHHHHHhcccCCCCCc-CCCCceeeCCCCcccccCCCC
Confidence 9999999999998888777664 222223333345556666688
No 2
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=7.2e-41 Score=226.13 Aligned_cols=201 Identities=68% Similarity=1.083 Sum_probs=184.4
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
......+||+++|++|+|||||+.++..+.|.+..+ +.|.++.+..+.+++..+++.+|||+|++.++.+...+++++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 445678999999999999999999999999988888 7999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
++|+|||++.+++|..+.. |...+..|..++++..++|+||+|.+..+.++.++...+++++++-|+++||++..++..
T Consensus 86 GiIlVYDVT~Rdtf~kLd~-W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDI-WLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQC 164 (209)
T ss_pred eeEEEEEccchhhHHhHHH-HHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence 9999999999999999966 999999999999999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329 168 CFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
.|+.+...+++.+.+.+......+.++......+.....++||
T Consensus 165 ~FeelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~~~~g~~C 207 (209)
T KOG0080|consen 165 CFEELVEKIIETPSLWEEGNSSAGLDIASDPDGEASAHQGGCC 207 (209)
T ss_pred HHHHHHHHHhcCcchhhccCCccccccccCCCcccccccCCcc
Confidence 9999999999999999988888888777633333333445577
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-40 Score=229.72 Aligned_cols=196 Identities=40% Similarity=0.662 Sum_probs=170.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|+.+||||||+.|+..++|.+. .+|+|.-+....+.++...+++.+|||+|++.|.++.+.++++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4679999999999999999999999999886 459999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
+|||+++.+||..++. |...+.+... +++.+.+||||+|+...+.+..+++..++.+.+..++++||+++.|++++|.
T Consensus 83 vvYDit~~~SF~~aK~-WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~ 160 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKN-WVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQ 160 (200)
T ss_pred EEEecccHHHHHHHHH-HHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHH
Confidence 9999999999999999 9999988665 7788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329 171 ELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
.|.+.+...+...................+ ++....+||
T Consensus 161 ~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~-~~~~~~~~C 199 (200)
T KOG0092|consen 161 AIAEKLPCSDPQERQGLPNRRQGVDLNSNQ-EPARPSGCC 199 (200)
T ss_pred HHHHhccCccccccccccccccceecccCC-CCcCcCCcC
Confidence 999999888877655322222222222222 455666776
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-38 Score=221.40 Aligned_cols=170 Identities=39% Similarity=0.628 Sum_probs=159.2
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
.-+.+||+++|+.+|||||||+|++.+.|...|. |+|.++....+.+.+.++.+++|||+|++.++++.+.+++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 3456999999999999999999999999988777 999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
|+|||+++..||++... |++.+.......++.+++||||.||.+++.+..+++...++++++.|+++||+.|+||..+|
T Consensus 99 viVyDit~~~Sfe~t~k-Wi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSK-WIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEEEeccccchHHHHHH-HHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 99999999999999999 99988876555568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 028329 170 EELVLKILDTPS 181 (210)
Q Consensus 170 ~~l~~~~~~~~~ 181 (210)
..|..++.+...
T Consensus 178 rrIaa~l~~~~~ 189 (221)
T KOG0094|consen 178 RRIAAALPGMEV 189 (221)
T ss_pred HHHHHhccCccc
Confidence 999888877755
No 5
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.6e-38 Score=232.49 Aligned_cols=195 Identities=34% Similarity=0.585 Sum_probs=172.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
+||+++|++|||||||+++|.++.+...+ ++.+.++....+.++ +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999998876554 477777777777777 7889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhc---cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEEccCCCCCHHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYS---TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQC 168 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~ 168 (210)
||++++++|+.+.. |...+.... ...++|++||+||+|+...+.+..+++..++...+ ..++++||+++.|++++
T Consensus 81 ~D~t~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 81 FDVTRPSTFEAVLK-WKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA 159 (201)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence 99999999999987 777776432 23678999999999997667778888899999988 58999999999999999
Q ss_pred HHHHHHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329 169 FEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 169 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
|.+|.+.+.+............+.+....++..+.++.+|||
T Consensus 160 f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 160 MRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence 999999999999888888888888888888888888999999
No 6
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-38 Score=222.05 Aligned_cols=173 Identities=53% Similarity=0.930 Sum_probs=162.9
Q ss_pred ccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028329 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 8 ~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
.++.++.+||+++|+++||||+|+.++..+.+...+. +.|.++....+.+++..+.+++|||+|++.++.....+++.|
T Consensus 6 ~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA 85 (207)
T KOG0078|consen 6 KEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA 85 (207)
T ss_pred cCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence 3477899999999999999999999999999877766 999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 166 (210)
+++++|||+++..||+++.. |+..++.+... ++|.++||||+|+...+.+..+.++.++.++|+.|+|+||++|.||+
T Consensus 86 ~gi~LvyDitne~Sfeni~~-W~~~I~e~a~~-~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRN-WIKNIDEHASD-DVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIE 163 (207)
T ss_pred CeeEEEEEccchHHHHHHHH-HHHHHHhhCCC-CCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence 99999999999999999999 99999987644 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCc
Q 028329 167 QCFEELVLKILDTPSL 182 (210)
Q Consensus 167 ~~~~~l~~~~~~~~~~ 182 (210)
+.|-.|.+.+.++...
T Consensus 164 eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 164 EAFLSLARDILQKLED 179 (207)
T ss_pred HHHHHHHHHHHhhcch
Confidence 9999999999875444
No 7
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=6.1e-37 Score=227.52 Aligned_cols=210 Identities=70% Similarity=1.161 Sum_probs=185.5
Q ss_pred CCCCcccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028329 1 MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS 80 (210)
Q Consensus 1 ~~s~~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (210)
|.+.+....+....+||+++|++|||||||+++|.++.+....++.+.++....+.+++..+.+.+||+||++.+...+.
T Consensus 1 ~~~~~~~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 80 (211)
T PLN03118 1 MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTS 80 (211)
T ss_pred CCcccccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence 45556666677788999999999999999999999988877667888878777788888889999999999999999999
Q ss_pred hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC
Q 028329 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 160 (210)
.+++.+|++++|||+++.++|+.+...|...+..+....+.|+++|+||+|+...+.+..++...++...++.++++||+
T Consensus 81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk 160 (211)
T PLN03118 81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAK 160 (211)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCC
Confidence 99999999999999999999999988787777765555678999999999998777777778888888889999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329 161 TRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
++.|++++|.+|...+.+....++++....+++..++....++..+.+||
T Consensus 161 ~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (211)
T PLN03118 161 TRENVEQCFEELALKIMEVPSLLEEGSTAVKRNILKQKPEHQPPPNGGCC 210 (211)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccccccCCCCcCCCC
Confidence 99999999999999999999989888888889999988888888888887
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=9.2e-37 Score=223.92 Aligned_cols=193 Identities=44% Similarity=0.765 Sum_probs=158.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+.|+++|++|||||||++++..+.|...+. +.+.++....+.+++..+.+.+||++|++.++.++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 368999999999999999999999876554 7788888888888999999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEEccCCCCCHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~l 172 (210)
|++++++|+.+.. |+..+.... ..++|++||+||+|+...+.+..+++..++... ++.+++|||++|.|++++|.++
T Consensus 81 Dvtd~~Sf~~l~~-w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 81 DITKKETFDDLPK-WMKMIDKYA-SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999987 888876643 457999999999999877888888888888775 7889999999999999999999
Q ss_pred HHHHHcCCCcccccccCcccccccCC-------CCccCccCCCCC
Q 028329 173 VLKILDTPSLLAEGSKGLKKNIFKQK-------PPEADAAASGCC 210 (210)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 210 (210)
++.+.+............. +++.-+ ..+.+..+..||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (202)
T cd04120 159 VDDILKKMPLDILRNELSN-SILSLQPEPEIPPELPPPRPHVRCC 202 (202)
T ss_pred HHHHHHhCccccccccccc-hhhccCCCCCCCcCCCCCCCCcccC
Confidence 9999775433222222222 111111 123466788888
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=7.8e-36 Score=217.09 Aligned_cols=167 Identities=39% Similarity=0.678 Sum_probs=150.0
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
.+..+||+++|+.|||||||+++|..+.+...+ ++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 456799999999999999999999998886555 4777777777788899999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
|+|||++++.+|+.+.. |+..+.... +++|++|||||.|+...+.+..++++.++...++++++|||++|.|++++|
T Consensus 83 llVfD~t~~~Sf~~~~~-w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 83 ILVYDITNRWSFDGIDR-WIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF 159 (189)
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 99999999999999987 888887643 579999999999998777888889999999999999999999999999999
Q ss_pred HHHHHHHHcCC
Q 028329 170 EELVLKILDTP 180 (210)
Q Consensus 170 ~~l~~~~~~~~ 180 (210)
.++.+.+..+.
T Consensus 160 ~~l~~~i~~~~ 170 (189)
T cd04121 160 TELARIVLMRH 170 (189)
T ss_pred HHHHHHHHHhc
Confidence 99999886543
No 10
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=209.52 Aligned_cols=171 Identities=38% Similarity=0.671 Sum_probs=156.9
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....+||+++|++|+|||||++++...+|...+. +++.++-...+.+++..+-+++|||+|++.++++-..+++++|+.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 3567999999999999999999999999987776 999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCC---CCcEEEEEeCCCCCCC--ceecHHHHHHHHHHhC-CcEEEEccCCCC
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ---DCIKLLVGNKVDKESE--RVVTKKEGINFAREYG-CLFIECSAKTRV 163 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~---~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~sa~~~~ 163 (210)
++|||.+++.||+.+.. |...+..+.... .-|+||+|||+|++.. +.++...+..|+...| ++||++|||...
T Consensus 86 vlvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 99999999999999999 888887665533 4699999999999653 7889999999999876 789999999999
Q ss_pred CHHHHHHHHHHHHHcCCCc
Q 028329 164 NVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~~~ 182 (210)
|+.+.|..+.+.++.....
T Consensus 165 NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDR 183 (210)
T ss_pred cHHHHHHHHHHHHHhccch
Confidence 9999999999999988865
No 11
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-36 Score=209.62 Aligned_cols=169 Identities=49% Similarity=0.866 Sum_probs=158.1
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
....+|++++|+.|||||+|+.+++...|...++ |.|.++....+++++..+++++|||+|++.+++....+++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 3568999999999999999999999999988887 999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
++|||+++.++|..+.. |+..++.+. ..+..+++++||+||...+.++.++++.|++.++..++++||+++.|++++|
T Consensus 83 lLVydit~r~sF~hL~~-wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTS-WLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred EEEEEccchhhHHHHHH-HHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence 99999999999999999 999988753 6788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 028329 170 EELVLKILDTPS 181 (210)
Q Consensus 170 ~~l~~~~~~~~~ 181 (210)
......+++..+
T Consensus 161 ~nta~~Iy~~~q 172 (216)
T KOG0098|consen 161 INTAKEIYRKIQ 172 (216)
T ss_pred HHHHHHHHHHHH
Confidence 998887765443
No 12
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=203.21 Aligned_cols=165 Identities=51% Similarity=0.824 Sum_probs=155.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
..++.+|+|++|+|||+|+.++..+.|+..|. ++|.++.+..+.++|..+++.|||++|++.++.....+++..+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 45788999999999999999999999988887 99999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 171 (210)
|||.++.+||.++.. |++.++.. .+.+|-++||||.|.+..+.+..++++.|+...++.+|++|+++++|++.+|.-
T Consensus 87 VYDVTn~ESF~Nv~r-WLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKR-WLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred EEECcchhhhHhHHH-HHHHHHhc--CccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 999999999999999 99999875 457899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 028329 172 LVLKILDTP 180 (210)
Q Consensus 172 l~~~~~~~~ 180 (210)
|.+++++..
T Consensus 164 it~qvl~~k 172 (198)
T KOG0079|consen 164 ITKQVLQAK 172 (198)
T ss_pred HHHHHHHHH
Confidence 999887654
No 13
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=6.6e-35 Score=214.70 Aligned_cols=195 Identities=45% Similarity=0.763 Sum_probs=162.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
+..+||+++|++|||||||+++|.++.+...+ ++.+.++....+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35799999999999999999999998876544 47777777777788888899999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
+|||++++++|+.+.. |+..+... ....|++||+||+|+.....+..+++..++...+++++++||+++.|++++|+
T Consensus 84 lv~D~~~~~s~~~~~~-~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 84 VVYDVTNGESFVNVKR-WLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFN 160 (199)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence 9999999999999987 87777653 35689999999999987777777888888888899999999999999999999
Q ss_pred HHHHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329 171 ELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
+|...+.+....................+++. ++++.||
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 199 (199)
T cd04110 161 CITELVLRAKKDNLAKQQQQQQNDVVKLPKNS-KRKKRCC 199 (199)
T ss_pred HHHHHHHHhhhccCcccccCCccccCccchhc-cccccCC
Confidence 99999987766655555555555555555443 4455666
No 14
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=215.71 Aligned_cols=182 Identities=34% Similarity=0.522 Sum_probs=152.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||++++..+.+...+. +.+.++ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 4899999999999999999999988765554 555444 45577888889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 172 (210)
||++++++|+.+.. |...+.......++|+++|+||.|++..+.+...++..++..++++++++||+++.|++++|.+|
T Consensus 84 ~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 84 YSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 99999999999988 77777665555689999999999997767677777888888888999999999999999999999
Q ss_pred HHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329 173 VLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
++.+.+..+.. .+++.+++++++||
T Consensus 163 ~~~l~~~~~~~-------------~~~~~~~~~~~~~~ 187 (189)
T PTZ00369 163 VREIRKYLKED-------------MPSQKQKKKGGLCL 187 (189)
T ss_pred HHHHHHHhhcc-------------chhhhhhccCCeee
Confidence 99886543211 34445566777887
No 15
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.4e-35 Score=213.90 Aligned_cols=189 Identities=41% Similarity=0.771 Sum_probs=156.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
+||+++|++|||||||+++|..+.+.. ..++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888753 334666666666678888899999999999999998888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 172 (210)
||+++.++++++.. |+..+.... ..++|+++|+||.|+...+.+..+++..++...+++++++||++|.|++++|.+|
T Consensus 81 ~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l 158 (191)
T cd04112 81 YDITNKASFDNIRA-WLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAV 158 (191)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999988 888777643 3478999999999997666677778888888889999999999999999999999
Q ss_pred HHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329 173 VLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
.+.+.+.... ...+...+.+..+++. +++++||
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~ 191 (191)
T cd04112 159 AKELKHRKYE-QPDEGKFKISDYVTKQ----KKISRCC 191 (191)
T ss_pred HHHHHHhccc-cCCCCcEEeccccCcc----cccCCCC
Confidence 9999888644 3333333344444443 4788998
No 16
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.7e-35 Score=215.34 Aligned_cols=185 Identities=35% Similarity=0.530 Sum_probs=148.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
||+++|++|||||||+++|+.+.+...++ +.+.. ......+++..+.+.+||++|++.+...+..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDS-YRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhh-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 68999999999999999999888866554 44433 34456678888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329 95 VTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 172 (210)
+++.++|+.+.. |+..+..... ..++|+++|+||+|+...+.+...++..++...+++++++||+++.|++++|.++
T Consensus 80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l 158 (190)
T cd04144 80 ITSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL 158 (190)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999988 7776655432 2578999999999997777777777888888889999999999999999999999
Q ss_pred HHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329 173 VLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
++.+.++...- .+....+...++|+++.||
T Consensus 159 ~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 159 VRALRQQRQGG--------QGPKGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHHhhccc--------CCCcCCCCCcccccccCce
Confidence 99887555442 1223344444445555554
No 17
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=3.8e-35 Score=217.67 Aligned_cols=187 Identities=33% Similarity=0.542 Sum_probs=149.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|.+|||||||+++|..+.+....++.+..+....+ ..+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 58999999999999999999999987666677666544433 46789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-------------------CceecHHHHHHHHHHhC----
Q 028329 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-------------------ERVVTKKEGINFAREYG---- 151 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~---- 151 (210)
++++++|..+..+|...... ...++|++||+||+|+.. .+.+..+++..++.+.+
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~--~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~ 154 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDT--ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM 154 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence 99999999998855554432 245689999999999965 56778889999998876
Q ss_pred ----------CcEEEEccCCCCCHHHHHHHHHHHHHcCCCcccccccCcccccccCCCCccCccCCCCC
Q 028329 152 ----------CLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 152 ----------~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
++|++|||++|.||+++|.++++.++........... ........++.+++|.+||
T Consensus 155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEAN---RTQGTVNLPNPKRSKSKCC 220 (220)
T ss_pred ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhh---hhhccccCCCcccCCCCCC
Confidence 6799999999999999999999988754333322111 1122334445678899999
No 18
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=2e-34 Score=214.53 Aligned_cols=167 Identities=44% Similarity=0.799 Sum_probs=148.8
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
.++.+||+++|++|||||||+++|.++.+... .++.+.++....+.+++..+.+.+||++|++.+...+..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 45779999999999999999999999887644 45888888888888889999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
++|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 89 ilv~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf 166 (216)
T PLN03110 89 LLVYDITKRQTFDNVQR-WLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAF 166 (216)
T ss_pred EEEEECCChHHHHHHHH-HHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999887 888777643 3579999999999998777777788888888889999999999999999999
Q ss_pred HHHHHHHHcC
Q 028329 170 EELVLKILDT 179 (210)
Q Consensus 170 ~~l~~~~~~~ 179 (210)
++++..+.+.
T Consensus 167 ~~l~~~i~~~ 176 (216)
T PLN03110 167 QTILLEIYHI 176 (216)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 19
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=7.6e-35 Score=209.64 Aligned_cols=166 Identities=38% Similarity=0.598 Sum_probs=145.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||++++..+.+...+. +.+..+ ...+.+++..+.+.+||++|+..+..++..++..+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 4799999999999999999999998875544 555333 44567788899999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 172 (210)
||++++.+|+.+.. |...+.......++|+++|+||+|+...+.+..+++..++...++++++|||+++.|++++|+++
T Consensus 81 ~d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 81 YSVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred EECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 99999999999987 77777765455679999999999998777788888899999999999999999999999999999
Q ss_pred HHHHHcCCC
Q 028329 173 VLKILDTPS 181 (210)
Q Consensus 173 ~~~~~~~~~ 181 (210)
++.+.+..+
T Consensus 160 ~~~~~~~~~ 168 (172)
T cd04141 160 VREIRRKES 168 (172)
T ss_pred HHHHHHhcc
Confidence 998876543
No 20
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-35 Score=196.27 Aligned_cols=175 Identities=49% Similarity=0.838 Sum_probs=161.1
Q ss_pred cccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcc
Q 028329 5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYY 83 (210)
Q Consensus 5 ~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 83 (210)
.+..+..++.+|++++|++.+|||||+.++++..|..... +.|..+....+......+.+++|||+|++.++.+.-.++
T Consensus 12 ~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayy 91 (193)
T KOG0093|consen 12 DSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYY 91 (193)
T ss_pred ccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHh
Confidence 4455677899999999999999999999999998865444 999999999888888999999999999999999999999
Q ss_pred cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC
Q 028329 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 163 (210)
++++++|++||+++.+||..+.. |...++.+. -.+.|+|+++||+|++.++.+..+.++.++..+|+.||++||+.+.
T Consensus 92 RgamgfiLmyDitNeeSf~svqd-w~tqIktys-w~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~Ni 169 (193)
T KOG0093|consen 92 RGAMGFILMYDITNEESFNSVQD-WITQIKTYS-WDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENI 169 (193)
T ss_pred hccceEEEEEecCCHHHHHHHHH-HHHHheeee-ccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccc
Confidence 99999999999999999999999 999999874 5579999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 028329 164 NVQQCFEELVLKILDTPS 181 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~~ 181 (210)
|++.+|..+...+-+..+
T Consensus 170 nVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 170 NVKQVFERLVDIICDKMS 187 (193)
T ss_pred cHHHHHHHHHHHHHHHhh
Confidence 999999999998866543
No 21
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.9e-34 Score=207.86 Aligned_cols=163 Identities=28% Similarity=0.545 Sum_probs=142.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|+++||||||++++..+.+...+. +.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 456899999999999999999999999876554 665444 456788999999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-cEEEE
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFIEC 157 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 157 (210)
+|||++++.||+.+...|...+.... ++.|++|||||.|+.. .+.+..+++..+++..++ +|++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 99999999999998555998887753 5689999999999853 346888999999999996 89999
Q ss_pred ccCCCCC-HHHHHHHHHHHHH
Q 028329 158 SAKTRVN-VQQCFEELVLKIL 177 (210)
Q Consensus 158 sa~~~~~-i~~~~~~l~~~~~ 177 (210)
||+++.| ++++|..+++.++
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999998654
No 22
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=3.5e-34 Score=205.17 Aligned_cols=163 Identities=53% Similarity=0.877 Sum_probs=145.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||+++|..+.+...++ +.+.++....+.+++..+.+.+||+||+..+...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999999998876655 777777777778888899999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 172 (210)
||++++++|+.+.. |+..+... ...+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|.++
T Consensus 82 ~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 82 YDITRRSTYNHLSS-WLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred EECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999988 77776553 34568999999999998877788888899999889999999999999999999999
Q ss_pred HHHHHc
Q 028329 173 VLKILD 178 (210)
Q Consensus 173 ~~~~~~ 178 (210)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T cd04122 160 AKKIYQ 165 (166)
T ss_pred HHHHhh
Confidence 988865
No 23
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-34 Score=204.50 Aligned_cols=176 Identities=47% Similarity=0.793 Sum_probs=162.1
Q ss_pred cccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcc
Q 028329 5 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYY 83 (210)
Q Consensus 5 ~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 83 (210)
......-++.|||+++|++++|||-|+.|+..+.|..... |.|.++....+.++++.+..+||||+|++.|++....++
T Consensus 5 ~~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYY 84 (222)
T KOG0087|consen 5 RDKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYY 84 (222)
T ss_pred cCCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhh
Confidence 3445677899999999999999999999999999976665 999999999999999999999999999999999999999
Q ss_pred cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC
Q 028329 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV 163 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 163 (210)
+++.++++|||++...+|+++.. |+..++.+. ..++++++||||+||...+.+..++++.++...+..++++||..+.
T Consensus 85 rgAvGAllVYDITr~~Tfenv~r-WL~ELRdha-d~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~t 162 (222)
T KOG0087|consen 85 RGAVGALLVYDITRRQTFENVER-WLKELRDHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDAT 162 (222)
T ss_pred cccceeEEEEechhHHHHHHHHH-HHHHHHhcC-CCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccc
Confidence 99999999999999999998888 999998865 4589999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCc
Q 028329 164 NVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~~~ 182 (210)
|++..|..++..+.+.-+.
T Consensus 163 NVe~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 163 NVEKAFERVLTEIYKIVSK 181 (222)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 9999999999888665443
No 24
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=5.5e-34 Score=212.18 Aligned_cols=165 Identities=35% Similarity=0.550 Sum_probs=144.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGG-KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
+||+++|++|||||||+++|.++.+...+. +.+.++....+.+++ ..+.+.+||++|+..+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999988866554 777787777777754 578999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccC--CCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTN--QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
||++++++|+.+.. |...+...... .++|+++|+||.|+...+.+..++...++...+++++++||++|.|++++|+
T Consensus 81 ~D~t~~~s~~~~~~-w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 81 YDVTNSQSFENLED-WYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999987 88888765432 4578999999999987777788888899998999999999999999999999
Q ss_pred HHHHHHHcCC
Q 028329 171 ELVLKILDTP 180 (210)
Q Consensus 171 ~l~~~~~~~~ 180 (210)
++.+.+.+..
T Consensus 160 ~l~~~l~~~~ 169 (215)
T cd04109 160 QLAAELLGVD 169 (215)
T ss_pred HHHHHHHhcc
Confidence 9999998753
No 25
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=5.4e-34 Score=205.28 Aligned_cols=161 Identities=32% Similarity=0.650 Sum_probs=140.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++++|||||+.++..+.|...+ ++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 79999999999999999999999997654 4666554 455778899999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc----------eecHHHHHHHHHHhCC-cEEEEccCCC
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER----------VVTKKEGINFAREYGC-LFIECSAKTR 162 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~sa~~~ 162 (210)
|+++++||+.+...|+..+.... .++|++|||||+|+.+.+ .+..+++..++...++ .+++|||+++
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~ 158 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ 158 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence 99999999998544888887643 479999999999996543 4778889999999998 5999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 028329 163 VNVQQCFEELVLKILD 178 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~ 178 (210)
.||+++|..+++.+.+
T Consensus 159 ~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 159 QNVKAVFDAAIKVVLQ 174 (176)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999997743
No 26
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.2e-34 Score=207.23 Aligned_cols=164 Identities=49% Similarity=0.794 Sum_probs=145.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|.++.+.. +.++.+.++....+.+++..+.+.+||++|...+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999998876 4457777777777888888999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|+++++++..+.. |+..+.... ...+|+++|+||.|+.+.+.+..+++..++...+++++++||+++.|++++|.+++
T Consensus 81 d~~~~~s~~~i~~-~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~ 158 (188)
T cd04125 81 DVTDQESFENLKF-WINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV 158 (188)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999988 888877643 34589999999999987777777788888888889999999999999999999999
Q ss_pred HHHHcCC
Q 028329 174 LKILDTP 180 (210)
Q Consensus 174 ~~~~~~~ 180 (210)
+.+.++.
T Consensus 159 ~~~~~~~ 165 (188)
T cd04125 159 KLIIKRL 165 (188)
T ss_pred HHHHHHh
Confidence 9997654
No 27
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=9.7e-34 Score=209.99 Aligned_cols=168 Identities=44% Similarity=0.760 Sum_probs=146.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
.+||+++|++|||||||+++|.++.+...+. +.+.++....+.+ ++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999988876554 7777777666666 4668899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 171 (210)
|||++++++|+.+.. |+..+.........|++||+||.|+...+.+..+++..++..++++++++||+++.|++++|++
T Consensus 82 v~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 82 VFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999988 8887766554556889999999999877778888888999999999999999999999999999
Q ss_pred HHHHHHcCCCc
Q 028329 172 LVLKILDTPSL 182 (210)
Q Consensus 172 l~~~~~~~~~~ 182 (210)
|.+.+.++...
T Consensus 161 l~~~~~~~~~~ 171 (211)
T cd04111 161 LTQEIYERIKR 171 (211)
T ss_pred HHHHHHHHhhc
Confidence 99988766443
No 28
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.8e-34 Score=205.18 Aligned_cols=161 Identities=25% Similarity=0.544 Sum_probs=139.6
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||++++..+.+...+. +.+..+ ...+.+++..+.+.+|||+|++.+..+...+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 3799999999999999999999998876554 555444 45678889999999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-cEEEEcc
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFIECSA 159 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa 159 (210)
||+++++||+.+...|...+.... ++.|+++||||.|+.. .+.+..+++..++...++ +|++|||
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA 157 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSA 157 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECcc
Confidence 999999999997555988887753 5789999999999954 245788899999999997 7999999
Q ss_pred CCCCC-HHHHHHHHHHHHH
Q 028329 160 KTRVN-VQQCFEELVLKIL 177 (210)
Q Consensus 160 ~~~~~-i~~~~~~l~~~~~ 177 (210)
++|.+ ++++|..+.+..+
T Consensus 158 ~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 158 FTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CcCCcCHHHHHHHHHHHHh
Confidence 99995 9999999998654
No 29
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3e-33 Score=208.65 Aligned_cols=167 Identities=23% Similarity=0.489 Sum_probs=144.8
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
.....+||+++|++|||||||+++|..+.|...+. +.+..+ ...+.+++..+.+.||||+|++.+..++..+++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 33567999999999999999999999998876554 666555 4457889999999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-cEE
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFI 155 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~ 155 (210)
+++|||++++++|+.+...|+..+.... ++.|++||+||+|+.. .+.+..+++..++...++ .|+
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~ 165 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYL 165 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEE
Confidence 9999999999999987555988887643 4689999999999864 256788899999999998 599
Q ss_pred EEccCCCC-CHHHHHHHHHHHHHcC
Q 028329 156 ECSAKTRV-NVQQCFEELVLKILDT 179 (210)
Q Consensus 156 ~~sa~~~~-~i~~~~~~l~~~~~~~ 179 (210)
+|||++|. |++++|..++..+.++
T Consensus 166 EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 166 ECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred EccCCcCCcCHHHHHHHHHHHHHHh
Confidence 99999998 8999999999988764
No 30
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.1e-35 Score=197.88 Aligned_cols=201 Identities=35% Similarity=0.643 Sum_probs=169.2
Q ss_pred ccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028329 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 8 ~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
-......|||+++|...+|||||+-|++.++|....- +....+....+.+.+....+.+|||+|++.|..+-+.+++++
T Consensus 7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence 3455678999999999999999999999999865554 666667777788888999999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 166 (210)
+++++|||++|.+||+.+.. |...++... ...+.+++|+||+|+++++.+..++++.++...|+.|+++||+.+.||.
T Consensus 87 nGalLVyDITDrdSFqKVKn-WV~Elr~ml-Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~ 164 (218)
T KOG0088|consen 87 NGALLVYDITDRDSFQKVKN-WVLELRTML-GNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGIS 164 (218)
T ss_pred CceEEEEeccchHHHHHHHH-HHHHHHHHh-CCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHH
Confidence 99999999999999999999 888888744 4568889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccCc--------ccccccCCCCccCccCCCCC
Q 028329 167 QCFEELVLKILDTPSLLAEGSKGL--------KKNIFKQKPPEADAAASGCC 210 (210)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 210 (210)
++|..+...+.+.-++..+...+. ......+.-++.+...++||
T Consensus 165 elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e~~a~~sg~~CC 216 (218)
T KOG0088|consen 165 ELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNEAEAERSGKRCC 216 (218)
T ss_pred HHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCCcccccccCCcc
Confidence 999999998887665543322111 11223334445566777798
No 31
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.3e-33 Score=206.49 Aligned_cols=162 Identities=28% Similarity=0.537 Sum_probs=139.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|+++||||||+.++..+.+...+ ++.+..+ ...+.+++..+.+.+||++|++.++.++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 489999999999999999999999986555 4666444 44567788999999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhC-CcEEEEcc
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYG-CLFIECSA 159 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa 159 (210)
||+++++||+.+...|...+... ..++|++||+||.|+.... .+..+++..++..++ .+++++||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999986688877654 3579999999999996442 356678888998888 58999999
Q ss_pred CCCCCHHHHHHHHHHHHHc
Q 028329 160 KTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~ 178 (210)
++|.|++++|.++.+.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998854
No 32
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.2e-33 Score=204.92 Aligned_cols=167 Identities=38% Similarity=0.714 Sum_probs=144.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC----------CeEEEEEEEeCCCccccccchh
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG----------GKKLKLAIWDTAGQERFRTLTS 80 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~l~D~~g~~~~~~~~~ 80 (210)
++.+||+++|++|||||||++++..+.+...+. +.+.++....+.+. +..+.+.+||++|++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 356999999999999999999999988865544 66666665555543 4568999999999999999999
Q ss_pred hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC
Q 028329 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 160 (210)
.+++++|++++|||+++++++..+.. |+..+.......+.|+++|+||+|+...+.+..+++..++...+++++++||+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 99999999999999999999999988 88888765555678999999999998777778888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 028329 161 TRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~ 179 (210)
++.|++++|++|.+.+.++
T Consensus 161 ~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 161 TGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999988653
No 33
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=3.6e-33 Score=207.24 Aligned_cols=165 Identities=22% Similarity=0.509 Sum_probs=141.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+.+|..+.++..+. +.+..+ ...+.+++..+.+.+||++|++.+..++..++..+|++++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 799999999999999999999998876554 665544 356788999999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEEccC
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAK 160 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~ 160 (210)
|++++++|+.+...|...+... ..++|++||+||+|+... ..+..+++..++...++ +|+||||+
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 9999999999977688777653 467999999999999542 13677889999999996 89999999
Q ss_pred CCCC-HHHHHHHHHHHHHcCCCc
Q 028329 161 TRVN-VQQCFEELVLKILDTPSL 182 (210)
Q Consensus 161 ~~~~-i~~~~~~l~~~~~~~~~~ 182 (210)
++.+ ++++|..+....+.+...
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~~~ 181 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRGHR 181 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhccCC
Confidence 9885 999999999988775543
No 34
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.4e-33 Score=201.06 Aligned_cols=164 Identities=54% Similarity=0.945 Sum_probs=145.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
..+||+++|++|||||||++++.++.+...+ ++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 5699999999999999999999999886654 477777777777888888999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 171 (210)
|||++++++|..+.. |+..+... ...++|+++|+||+|+.+.+.+..+++..++..++.+++++||+++.|++++|.+
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 82 VYDITDEKSFENIRN-WMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT 159 (167)
T ss_pred EEECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999988 88888764 3457899999999999877777778888888888999999999999999999999
Q ss_pred HHHHHHc
Q 028329 172 LVLKILD 178 (210)
Q Consensus 172 l~~~~~~ 178 (210)
+.+.+.+
T Consensus 160 i~~~~~~ 166 (167)
T cd01867 160 LAKDIKK 166 (167)
T ss_pred HHHHHHh
Confidence 9998864
No 35
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=3e-33 Score=200.32 Aligned_cols=163 Identities=32% Similarity=0.601 Sum_probs=143.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|+++.+...+. +.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999998765544 7777777777888889999999999999999989999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccC----CCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTN----QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
|++++++++.+.. |+..+...... .+.|+++|+||+|+........++...++...+++++++||+++.|++++|
T Consensus 81 D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 81 DVTDRQSFEALDS-WLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999887 88888765543 579999999999997666677778888888888999999999999999999
Q ss_pred HHHHHHHHc
Q 028329 170 EELVLKILD 178 (210)
Q Consensus 170 ~~l~~~~~~ 178 (210)
++|.+.+++
T Consensus 160 ~~l~~~l~~ 168 (168)
T cd04119 160 QTLFSSIVD 168 (168)
T ss_pred HHHHHHHhC
Confidence 999998764
No 36
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=3e-33 Score=199.55 Aligned_cols=160 Identities=39% Similarity=0.680 Sum_probs=138.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||++++..+.+...+. +.+ ......+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 799999999999999999999888866554 443 444556778888899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|++++++++.+.. |...+.......++|+++|+||+|+...+.+..++...++..++.+++++||+++.|++++|+++.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999988 777776655556799999999999977677777777788888888999999999999999999998
Q ss_pred HHH
Q 028329 174 LKI 176 (210)
Q Consensus 174 ~~~ 176 (210)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 764
No 37
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.9e-34 Score=193.57 Aligned_cols=171 Identities=46% Similarity=0.801 Sum_probs=154.1
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
..+.++++++|++-+|||+|+++++.+++++... +.|.+++..-+.+ .|..+++++|||+|++.+++....+++++-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 4578999999999999999999999999988765 8898888776655 7778999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCC-CcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD-CIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
+++|||+++.+||+.+.. |......+...+. +-+.+||+|+|+...+.+..++++.++..+|..|+++|+++|.|+++
T Consensus 85 vllvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred eEEEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence 999999999999999999 8888877776444 45568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCc
Q 028329 168 CFEELVLKILDTPSL 182 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~ 182 (210)
.|+.|.+.++..-.+
T Consensus 164 AF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 164 AFDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999988665444
No 38
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.3e-33 Score=203.25 Aligned_cols=166 Identities=30% Similarity=0.536 Sum_probs=138.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
+||+++|++|||||||+++|.++.+...+. +.+..+. ..+... +..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999998875554 4444443 334554 6788999999999999999998899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc----eecHHHHHHHHHHhCC-cEEEEccCCCCCHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER----VVTKKEGINFAREYGC-LFIECSAKTRVNVQQ 167 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~ 167 (210)
||+++.++|+.+...|...+... ..++|+++|+||.|+.... .+..+++..++...+. +++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 157 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEE 157 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHH
Confidence 99999999999976687777653 3578999999999985432 4567788888888888 899999999999999
Q ss_pred HHHHHHHHHHcCCCcc
Q 028329 168 CFEELVLKILDTPSLL 183 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~~ 183 (210)
+|..+.+.+.+.....
T Consensus 158 ~f~~l~~~~~~~~~~~ 173 (187)
T cd04132 158 VFDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHHhhhhhh
Confidence 9999999998666444
No 39
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=8e-33 Score=197.94 Aligned_cols=162 Identities=50% Similarity=0.851 Sum_probs=142.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|.++.+...+ ++.+.++....+..++..+.+.+||++|+..+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999886544 47776777667777888899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|.++.++++.+.. |+..+.... ....|+++|+||+|+...+....++...++...+.+++++||+++.|++++|+++.
T Consensus 82 d~~~~~s~~~~~~-~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 82 DITNEESFNAVQD-WSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999988 888876533 34689999999999977777777788888888899999999999999999999999
Q ss_pred HHHHc
Q 028329 174 LKILD 178 (210)
Q Consensus 174 ~~~~~ 178 (210)
..+.+
T Consensus 160 ~~~~~ 164 (165)
T cd01865 160 DIICD 164 (165)
T ss_pred HHHHh
Confidence 87643
No 40
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=6e-33 Score=198.36 Aligned_cols=161 Identities=42% Similarity=0.690 Sum_probs=139.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++++.+.+...++ +.+..+ ...+.+++..+.+.+||+||+..+..++..+++++|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 799999999999999999999887765444 554443 455777888899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|+++..+++.+.. |...+.......+.|+++|+||+|+.....+..+++..++..++++++++||+++.|++++|.++.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 81 SITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999988 666665545567899999999999987777777777888888899999999999999999999999
Q ss_pred HHHH
Q 028329 174 LKIL 177 (210)
Q Consensus 174 ~~~~ 177 (210)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8763
No 41
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=7.9e-33 Score=198.12 Aligned_cols=163 Identities=56% Similarity=0.928 Sum_probs=144.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||++++.++.+...+ ++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 489999999999999999999988876544 4777777777778888889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 172 (210)
||+++++++..+.. |+..+.... ..+.|+++|+||.|+...+.+..+++..++...+++++++||+++.|++++|.++
T Consensus 82 ~d~~~~~s~~~l~~-~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 82 YDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred EECcCHHHHHhHHH-HHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence 99999999999988 888877643 3568999999999997777777888889999899999999999999999999999
Q ss_pred HHHHHc
Q 028329 173 VLKILD 178 (210)
Q Consensus 173 ~~~~~~ 178 (210)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T cd01869 160 AREIKK 165 (166)
T ss_pred HHHHHh
Confidence 998753
No 42
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.7e-32 Score=201.06 Aligned_cols=163 Identities=34% Similarity=0.580 Sum_probs=140.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEE--LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
+||+++|++|||||||+++|..+.+.. +.++.+.++....+.+++..+.+.+||++|...+..++..++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988864 445777777777788899999999999999999998998899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC----ceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE----RVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
||+++.++++.+.. |+..+... ..+.|+++|+||+|+... +.+..+++..++...+++++++||+++.|++++
T Consensus 81 ~d~~~~~s~~~~~~-~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 157 (193)
T cd04118 81 YDLTDSSSFERAKF-WVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDEL 157 (193)
T ss_pred EECCCHHHHHHHHH-HHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999877 88877653 347899999999998532 344556677778888899999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028329 169 FEELVLKILDTP 180 (210)
Q Consensus 169 ~~~l~~~~~~~~ 180 (210)
|+++.+.+.++.
T Consensus 158 ~~~i~~~~~~~~ 169 (193)
T cd04118 158 FQKVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHHHhc
Confidence 999999997654
No 43
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=7.8e-33 Score=199.67 Aligned_cols=159 Identities=30% Similarity=0.566 Sum_probs=135.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||++++..+.+...+ |+.+..+ ...+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999885544 4665544 345677888899999999999999999988999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-CcEEEEccC
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYG-CLFIECSAK 160 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~ 160 (210)
|++++++|+.+...|...+... ..++|++||+||+|+... +.+..+++..++...+ +.++++||+
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999986688888764 357899999999998543 4566778888888887 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028329 161 TRVNVQQCFEELVLKI 176 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~ 176 (210)
+|.|++++|+.+++..
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 44
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=7.3e-33 Score=197.38 Aligned_cols=159 Identities=46% Similarity=0.848 Sum_probs=141.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||++++..+.+...+ ++.+.++....+.+++..+.+.+||++|+..+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999998886543 47777777777888888899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|++++++|+.+.. |+..+.... ..+.|+++|+||.|+...+.+..+++..+++.++++++++||+++.|++++|.+|.
T Consensus 81 d~~~~~sf~~~~~-~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 81 DISSERSYQHIMK-WVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999987 888776543 34689999999999987777888889999998999999999999999999999998
Q ss_pred HH
Q 028329 174 LK 175 (210)
Q Consensus 174 ~~ 175 (210)
+.
T Consensus 159 ~~ 160 (161)
T cd04117 159 EL 160 (161)
T ss_pred hh
Confidence 65
No 45
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1e-32 Score=201.51 Aligned_cols=163 Identities=31% Similarity=0.510 Sum_probs=136.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
.||+++|++|||||||+++|..+.+...+. +.+..+ ...+..++..+.+.+||++|++.+..++..++..+|++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 389999999999999999999998876554 555443 345667888899999999999999999988999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhC-CcEEEEccC
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYG-CLFIECSAK 160 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa~ 160 (210)
|++++++|+.+...|+..+... ..+.|+++|+||+|+.... .+..+++..++...+ +.+++|||+
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 157 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAK 157 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCC
Confidence 9999999999976688888754 3478999999999996543 245566777777776 689999999
Q ss_pred CCCCHHHHHHHHHHHHHcCC
Q 028329 161 TRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~~ 180 (210)
+|.|++++|.++.+.+...+
T Consensus 158 ~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 158 LNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred cCCCHHHHHHHHHHHHhccc
Confidence 99999999999999987433
No 46
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=6.6e-33 Score=197.71 Aligned_cols=160 Identities=45% Similarity=0.754 Sum_probs=147.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
||+++|+++||||||+++|.++.+...+. +.+.+.....+..++..+.+.+||++|++.+..+...+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999998876665 77788888889999999999999999999999989999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 174 (210)
+++++|++.+.. |...+..... .+.|++|++||.|+...+.+..++++.++..++++|+++|++++.|+.++|..+++
T Consensus 81 ~~~~~S~~~~~~-~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~ 158 (162)
T PF00071_consen 81 VTDEESFENLKK-WLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIR 158 (162)
T ss_dssp TTBHHHHHTHHH-HHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred cccccccccccc-cccccccccc-ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999997 9999887654 56899999999999888889999999999999999999999999999999999999
Q ss_pred HHH
Q 028329 175 KIL 177 (210)
Q Consensus 175 ~~~ 177 (210)
.+.
T Consensus 159 ~i~ 161 (162)
T PF00071_consen 159 KIL 161 (162)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 47
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2e-32 Score=204.02 Aligned_cols=165 Identities=33% Similarity=0.534 Sum_probs=141.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|||||||+++++.+.+...+ ++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67799999999999999999999988886544 48888887777777888899999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
+|||+++++++..+.. |+..+.... .+.|+++|+||+|+... .+..+++ .++...++.++++||++|.|++++|.
T Consensus 91 lvfD~~~~~s~~~i~~-w~~~i~~~~--~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~ 165 (219)
T PLN03071 91 IMFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFL 165 (219)
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHHhC--CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHH
Confidence 9999999999999987 888887643 57999999999998533 2333444 66777788999999999999999999
Q ss_pred HHHHHHHcCCC
Q 028329 171 ELVLKILDTPS 181 (210)
Q Consensus 171 ~l~~~~~~~~~ 181 (210)
+|.+.+.+...
T Consensus 166 ~l~~~~~~~~~ 176 (219)
T PLN03071 166 YLARKLAGDPN 176 (219)
T ss_pred HHHHHHHcCcc
Confidence 99999976644
No 48
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.3e-32 Score=196.57 Aligned_cols=162 Identities=40% Similarity=0.654 Sum_probs=139.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|||||||+++|.++.+...+.....+.......+++..+.+.+||+||++.+...+..++..+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999988876655432233445566778888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 174 (210)
++++++++.+.. |...+.......+.|+++|+||+|+...+....+++..++...+++++++||+++.|++++|++|++
T Consensus 81 ~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 81 ITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 999999999988 6666665555567999999999999877777777888888888999999999999999999999998
Q ss_pred HHH
Q 028329 175 KIL 177 (210)
Q Consensus 175 ~~~ 177 (210)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 764
No 49
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=3e-32 Score=195.57 Aligned_cols=164 Identities=50% Similarity=0.878 Sum_probs=145.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
..+||+++|++|||||||++++.++.+...++ +.+.++....+..++....+.+||++|++.+...+..+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988766554 77777777778888888999999999999999988999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 171 (210)
|||+++++++..+.. |+..+.... .++.|++||+||.|+.....+..+++..++...++.++++||+++.|++++|.+
T Consensus 83 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 83 VYDITRRETFNHLTS-WLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999988 888776643 467999999999999777777888888888888999999999999999999999
Q ss_pred HHHHHHc
Q 028329 172 LVLKILD 178 (210)
Q Consensus 172 l~~~~~~ 178 (210)
+.+.+.+
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9998764
No 50
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=1.8e-32 Score=197.55 Aligned_cols=158 Identities=30% Similarity=0.540 Sum_probs=135.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+.++..+.+...+. +.+ ......+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 799999999999999999999988865554 544 344455677888899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEEccC
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAK 160 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~ 160 (210)
|++++++|..+...|...+... ..++|++||+||.|+... +.+..+++..++..++. ++++|||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999976688877654 357999999999999543 24677888899998885 89999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028329 161 TRVNVQQCFEELVLK 175 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~ 175 (210)
+|.|++++|+.+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999998864
No 51
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.7e-32 Score=195.75 Aligned_cols=161 Identities=37% Similarity=0.594 Sum_probs=138.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|||||||++++..+.+...+.+....+....+.+++....+.+||++|++.+..++..+++++|++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d 81 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEE
Confidence 79999999999999999999999887655533334556677788888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 174 (210)
++++.++.++.. |...+.......++|+++|+||+|+.....+...+...++...+++++++||+++.|++++|.++.+
T Consensus 82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 82 LVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 999999999988 7777765544568999999999999766666666777888778889999999999999999999987
Q ss_pred HH
Q 028329 175 KI 176 (210)
Q Consensus 175 ~~ 176 (210)
.+
T Consensus 161 ~l 162 (163)
T cd04176 161 QM 162 (163)
T ss_pred hc
Confidence 54
No 52
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=7.9e-32 Score=199.77 Aligned_cols=166 Identities=48% Similarity=0.845 Sum_probs=145.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
++.+||+++|++|||||||+++|+...+...+ ++.+.++....+.+++..+.+.+||++|...+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45699999999999999999999988876544 47777777777888888899999999999999989999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
+|||+++++++..+.. |+..+.... ....|+++|+||.|+...+.+..+++..++..++++++++||+++.|++++|.
T Consensus 84 lv~D~~~~~s~~~l~~-~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~ 161 (210)
T PLN03108 84 LVYDITRRETFNHLAS-WLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (210)
T ss_pred EEEECCcHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999887 776665432 35789999999999987777888888999999999999999999999999999
Q ss_pred HHHHHHHcC
Q 028329 171 ELVLKILDT 179 (210)
Q Consensus 171 ~l~~~~~~~ 179 (210)
++++.+.++
T Consensus 162 ~l~~~~~~~ 170 (210)
T PLN03108 162 KTAAKIYKK 170 (210)
T ss_pred HHHHHHHHH
Confidence 999988764
No 53
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=3.9e-32 Score=197.05 Aligned_cols=163 Identities=28% Similarity=0.572 Sum_probs=138.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|..+.+...+ ++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999887644 58888887777888998999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-----CceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-----ERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
|+++++++..+.. |+..+.... ....| ++|+||+|+.. ......+++..++...+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~-~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKE-WYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999987 888776543 33466 67899999842 1112245677788888899999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028329 169 FEELVLKILDTP 180 (210)
Q Consensus 169 ~~~l~~~~~~~~ 180 (210)
|.++.+.+.+.+
T Consensus 158 f~~l~~~l~~~~ 169 (182)
T cd04128 158 FKIVLAKAFDLP 169 (182)
T ss_pred HHHHHHHHHhcC
Confidence 999999887644
No 54
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4e-32 Score=194.28 Aligned_cols=161 Identities=45% Similarity=0.806 Sum_probs=140.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
+.+||+++|++|||||||+++|..+.+...+. +.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 56999999999999999999999888766554 66667777778888888899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCHHHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~ 170 (210)
|||++++.+++.+.. |+..+... ...++|+++|+||+|+...+.+..+++..+++..+. .++++||++|.|++++|.
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 82 AYDITRRSSFESVPH-WIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred EEECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 999999999999887 88877653 345789999999999987777777788888888876 589999999999999999
Q ss_pred HHHHH
Q 028329 171 ELVLK 175 (210)
Q Consensus 171 ~l~~~ 175 (210)
++.+.
T Consensus 160 ~l~~~ 164 (165)
T cd01864 160 LMATE 164 (165)
T ss_pred HHHHh
Confidence 99865
No 55
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=5.4e-32 Score=194.46 Aligned_cols=162 Identities=33% Similarity=0.588 Sum_probs=139.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
||+++|++|||||||++++..+.+...+ ++.+.++....+.+++....+.+||++|++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999887555 577778777778888889999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 172 (210)
+++.+++..+.. |+..+.........|+++|+||.|+..... ...+++..++..++.+++++||+++.|++++|..+
T Consensus 82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 999999999987 887765433334578999999999855433 24556677778888899999999999999999999
Q ss_pred HHHHHc
Q 028329 173 VLKILD 178 (210)
Q Consensus 173 ~~~~~~ 178 (210)
.+.+.+
T Consensus 161 ~~~~~~ 166 (170)
T cd04108 161 AALTFE 166 (170)
T ss_pred HHHHHH
Confidence 998854
No 56
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=4.5e-32 Score=194.04 Aligned_cols=159 Identities=33% Similarity=0.469 Sum_probs=134.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++++++.+...+. +.+. .+...+..+...+.+.+||++|++.+..++...+..+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED-TYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 799999999999999999999988865544 4433 33444566778899999999999999988888899999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhcc--CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYST--NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 171 (210)
|+++.++++.+.. |+..+..... ..++|+++|+||+|+...+.+..+++..++...++.++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence 9999999999988 6666655322 257899999999999776777777778888888899999999999999999999
Q ss_pred HHHH
Q 028329 172 LVLK 175 (210)
Q Consensus 172 l~~~ 175 (210)
|++.
T Consensus 160 l~~~ 163 (165)
T cd04140 160 LLNL 163 (165)
T ss_pred HHhc
Confidence 8753
No 57
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=5.5e-32 Score=192.68 Aligned_cols=159 Identities=35% Similarity=0.593 Sum_probs=135.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|+++.+...+. +.+. .....+.+++....+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 799999999999999999999888765554 4443 33555677888888999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|+++..++..+.. |...+.......+.|+++|+||+|+.. +.....++..++...+++++++||+++.|++++|.+++
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 81 AINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999887 666666555556899999999999865 45556677788888899999999999999999999998
Q ss_pred HHH
Q 028329 174 LKI 176 (210)
Q Consensus 174 ~~~ 176 (210)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 764
No 58
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=4e-32 Score=193.50 Aligned_cols=159 Identities=48% Similarity=0.800 Sum_probs=140.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|.++.+...+. +.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999988765544 7777777777788888899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|+++++++..+.. |+..+... ...++|+++|+||.|+.....+..+++..++...++.++++||+++.|++++|+++.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 81 DITNRTSFEALPT-WLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999987 77776553 346799999999999987777888888999999999999999999999999999998
Q ss_pred HH
Q 028329 174 LK 175 (210)
Q Consensus 174 ~~ 175 (210)
+.
T Consensus 159 ~~ 160 (161)
T cd04113 159 RS 160 (161)
T ss_pred Hh
Confidence 75
No 59
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=6.6e-32 Score=192.80 Aligned_cols=161 Identities=37% Similarity=0.587 Sum_probs=137.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|+|||||++++.++.+...++ +.+ ........+++..+.+.+||+||+..+..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4799999999999999999999887755444 433 33344566788889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 172 (210)
||+++..++..+.. |...+.......+.|+++++||+|+...+.+..+++..++...+++++++||+++.|++++|+++
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 81 FSVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 99999999999988 66666655555689999999999998777777777888888888999999999999999999999
Q ss_pred HHHH
Q 028329 173 VLKI 176 (210)
Q Consensus 173 ~~~~ 176 (210)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8765
No 60
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=6.7e-32 Score=193.30 Aligned_cols=161 Identities=34% Similarity=0.602 Sum_probs=136.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||++++..+.+... .++.+.++....+..++..+.+.+||++|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999998776543 447777777777777888899999999999998888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|+++.+++..+.. |...+..... ++|+++|+||+|+... ... .+...++...+++++++||++|.|++++|++|.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~--~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 81 DVTSRVTYKNVPN-WHRDLVRVCG--NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCC--CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence 9999999999987 8888876543 7999999999998632 232 334566667778999999999999999999999
Q ss_pred HHHHcCC
Q 028329 174 LKILDTP 180 (210)
Q Consensus 174 ~~~~~~~ 180 (210)
+.+.+..
T Consensus 156 ~~~~~~~ 162 (166)
T cd00877 156 RKLLGNP 162 (166)
T ss_pred HHHHhcc
Confidence 9987644
No 61
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9e-33 Score=184.91 Aligned_cols=169 Identities=43% Similarity=0.795 Sum_probs=154.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
+..+||+++|..|+|||+|+++++.+-|+.... +.|.++-...+.+++.++++++|||+|++.+++....+++.++++|
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 567999999999999999999999999876555 9999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
+|||++...+|.-+.+ |+..+..|.+.. +--|+|+||.|+.+.+++..+.+++++......|+++||++..|++.+|.
T Consensus 85 lvydiscqpsfdclpe-wlreie~yan~k-vlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 85 LVYDISCQPSFDCLPE-WLREIEQYANNK-VLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EEEecccCcchhhhHH-HHHHHHHHhhcc-eEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 9999999999999999 999999987664 56689999999998889999989999888888899999999999999999
Q ss_pred HHHHHHHcCCCc
Q 028329 171 ELVLKILDTPSL 182 (210)
Q Consensus 171 ~l~~~~~~~~~~ 182 (210)
.+...+.....+
T Consensus 163 ~~a~rli~~ar~ 174 (213)
T KOG0095|consen 163 DLACRLISEARQ 174 (213)
T ss_pred HHHHHHHHHHHh
Confidence 998877654433
No 62
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=7.8e-32 Score=192.75 Aligned_cols=162 Identities=47% Similarity=0.820 Sum_probs=142.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
..+||+++|++|||||||+++|.++.+... .++.+.++....+..++..+.+.+||+||+..+..++..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 458999999999999999999998887644 4577777777788888888999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 171 (210)
|||++++.++..+.. |+..+.... ..++|+++|+||.|+...+.+..++...++...+++++++||+++.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 159 (165)
T cd01868 82 VYDITKKQTFENVER-WLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQ 159 (165)
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999987 888776643 335899999999999877777777888888888899999999999999999999
Q ss_pred HHHHH
Q 028329 172 LVLKI 176 (210)
Q Consensus 172 l~~~~ 176 (210)
+...+
T Consensus 160 l~~~i 164 (165)
T cd01868 160 LLTEI 164 (165)
T ss_pred HHHHh
Confidence 98775
No 63
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=8.5e-32 Score=193.54 Aligned_cols=162 Identities=38% Similarity=0.685 Sum_probs=142.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhcccCccEEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-TLTSSYYRGAQGIIM 91 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~ 91 (210)
.+||+++|++|||||||+++++.+.+...+ ++.+.++....+.+++..+.+.+||++|++.+. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 589999999999999999999988876544 477777777778888989999999999998876 467888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC---CCCHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT---RVNVQQC 168 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---~~~i~~~ 168 (210)
|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||++ +.+++++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 82 VYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence 999999999999988 888887766667899999999999987777777888888888889999999999 8899999
Q ss_pred HHHHHHHH
Q 028329 169 FEELVLKI 176 (210)
Q Consensus 169 ~~~l~~~~ 176 (210)
|.++.+.+
T Consensus 161 f~~l~~~~ 168 (170)
T cd04115 161 FMTLAHKL 168 (170)
T ss_pred HHHHHHHh
Confidence 99998766
No 64
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=9.4e-32 Score=193.93 Aligned_cols=160 Identities=32% Similarity=0.583 Sum_probs=136.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT 96 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 96 (210)
|+++|++|||||||+++|..+.+...+...........+.+++..+.+.+||++|++.+..++..+++.+|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999988765543333344456677888899999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhCC-cEEEEccCCCC
Q 028329 97 RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVTKKEGINFAREYGC-LFIECSAKTRV 163 (210)
Q Consensus 97 ~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 163 (210)
++++|+.+...|+..+... ..++|+++|+||+|+.... .+..+++..++...+. .++++||+++.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999976688888764 3579999999999996432 3667778889999886 89999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 028329 164 NVQQCFEELVLKILD 178 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~ 178 (210)
|++++|+.+.+.+++
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988754
No 65
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.6e-31 Score=190.79 Aligned_cols=162 Identities=56% Similarity=0.928 Sum_probs=142.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|.+..+...+ ++.+.++....+..++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988875444 47777777777888888889999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|++++.+++.+.. |+..+..+.. .++|+++|+||+|+...+.+..+.+..++...+++++++|++++.|++++|+++.
T Consensus 81 d~~~~~s~~~~~~-~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 81 DITNRESFENLKN-WLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999887 8887776542 5799999999999977667777788888888899999999999999999999999
Q ss_pred HHHHc
Q 028329 174 LKILD 178 (210)
Q Consensus 174 ~~~~~ 178 (210)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T smart00175 159 REILK 163 (164)
T ss_pred HHHhh
Confidence 98865
No 66
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=9.9e-32 Score=191.58 Aligned_cols=158 Identities=35% Similarity=0.594 Sum_probs=137.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC--CeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG--GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
+||+++|++|+|||||+++++++.+...+ ++.+.++....+.+. +..+.+.+||+||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999998876544 477777766666666 778999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 171 (210)
|||+++++++..+.. |...+... ..++|+++|+||.|+.....+..+++..++...+++++++|++++.|++++|++
T Consensus 81 v~d~~~~~s~~~l~~-~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (162)
T cd04106 81 VFSTTDRESFEAIES-WKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEY 157 (162)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 999999999999887 88777643 357899999999999777777778888889999999999999999999999999
Q ss_pred HHHH
Q 028329 172 LVLK 175 (210)
Q Consensus 172 l~~~ 175 (210)
|...
T Consensus 158 l~~~ 161 (162)
T cd04106 158 LAEK 161 (162)
T ss_pred HHHh
Confidence 8754
No 67
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.3e-31 Score=191.28 Aligned_cols=162 Identities=41% Similarity=0.704 Sum_probs=139.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+||+++|++|||||||++++..+.+...+ ++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 46799999999999999999999988876544 47777776777788999999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQ 166 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 166 (210)
+|||+++++++..+.. |...+..... ..++|+++|+||.|+. .+.+..+++..++..++. +++++||+++.|+.
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 83 LTFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 9999999999999887 7766654332 3568999999999986 555667788888888874 79999999999999
Q ss_pred HHHHHHHHH
Q 028329 167 QCFEELVLK 175 (210)
Q Consensus 167 ~~~~~l~~~ 175 (210)
++|.++++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999865
No 68
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-32 Score=183.42 Aligned_cols=172 Identities=47% Similarity=0.788 Sum_probs=157.6
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
+.-++.+|++++|+.|+|||+|++++..++|..... +.|.++...-+.+.+..+++++|||+|++.+++..+.+++++.
T Consensus 4 EtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAA 83 (214)
T KOG0086|consen 4 ETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 83 (214)
T ss_pred hhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 344678999999999999999999999999977666 9999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
+.++|||+++.++|+.+.. |+.-.+- ...+++-+++++||.|+...+.+...++..++.+..+.+.++|+++|+|+++
T Consensus 84 GAlLVYD~TsrdsfnaLtn-WL~DaR~-lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 84 GALLVYDITSRDSFNALTN-WLTDART-LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred ceEEEEeccchhhHHHHHH-HHHHHHh-hCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 9999999999999999999 9888876 4466788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCc
Q 028329 168 CFEELVLKILDTPSL 182 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~ 182 (210)
.|-...+.++.+-+.
T Consensus 162 aFl~c~~tIl~kIE~ 176 (214)
T KOG0086|consen 162 AFLKCARTILNKIES 176 (214)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999888877665544
No 69
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=4.2e-31 Score=188.32 Aligned_cols=159 Identities=34% Similarity=0.572 Sum_probs=134.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||++++..+.+...+. +.+.++......+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988865544 6666666666777888999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|++++.++..+.. |+..+... ..+.|+++|+||+|+... ..++...++...+++++++||+++.|++++|+.+.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~--~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (161)
T cd04124 81 DVTRKITYKNLSK-WYEELREY--RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI 154 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh--CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999877 88877653 346899999999998532 12344556666788999999999999999999999
Q ss_pred HHHHcC
Q 028329 174 LKILDT 179 (210)
Q Consensus 174 ~~~~~~ 179 (210)
+.+.++
T Consensus 155 ~~~~~~ 160 (161)
T cd04124 155 KLAVSY 160 (161)
T ss_pred HHHHhc
Confidence 988765
No 70
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=3.1e-31 Score=194.61 Aligned_cols=167 Identities=25% Similarity=0.393 Sum_probs=134.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhcccC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSYYRG 85 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~ 85 (210)
+||+++|++|||||||+++|.++.+...+ |+.+.++....+.+++..+.+.+||+||...+... ....+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999998886644 46555565566777888899999999996543221 2334788
Q ss_pred ccEEEEEEeCCCcccHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCcEEEEccCCC
Q 028329 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS--TNQDCIKLLVGNKVDKESERVVTKKEGINFAR-EYGCLFIECSAKTR 162 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~ 162 (210)
+|++++|||++++++++.+.. |...+.... ...++|+++|+||+|+...+....++...++. .++++++++||++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 999999999999999999988 666665433 24679999999999997766666666666654 56889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCc
Q 028329 163 VNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~~~~~ 182 (210)
.|++++|..+++.++.+...
T Consensus 160 ~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 160 WHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCHHHHHHHHHHHhhccCCC
Confidence 99999999999988866654
No 71
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=5.4e-31 Score=187.96 Aligned_cols=161 Identities=46% Similarity=0.769 Sum_probs=142.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||+++|.++.+.. ..++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 3799999999999999999999998876 455777777777788889999999999999999998898899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 172 (210)
+|+++++++..... |+..+.... ...+|+++++||+|+........++...++...+++++++||++|.|+.++|+++
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 81 YDITSEESFEKAKS-WVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred EECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999987 777776543 3679999999999997666677778888888888999999999999999999999
Q ss_pred HHHH
Q 028329 173 VLKI 176 (210)
Q Consensus 173 ~~~~ 176 (210)
.+.+
T Consensus 159 ~~~l 162 (163)
T cd01860 159 AKKL 162 (163)
T ss_pred HHHh
Confidence 9875
No 72
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-33 Score=190.98 Aligned_cols=171 Identities=37% Similarity=0.679 Sum_probs=154.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEE---------CCeEEEEEEEeCCCccccccchhh
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDV---------GGKKLKLAIWDTAGQERFRTLTSS 81 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~l~D~~g~~~~~~~~~~ 81 (210)
++.||.+.+|++|+||||++++++.++|..... +.+.++....+.+ .+..+.+++|||+|++.++++..+
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 567899999999999999999999999865444 8888887777655 234588999999999999999999
Q ss_pred cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 161 (210)
+++.+-+++++||+++..||.++++ |+..+.-..-..+.-|++++||+|++..+.+...++..++.++++|||++||-+
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 9999999999999999999999999 999998777677788899999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCcc
Q 028329 162 RVNVQQCFEELVLKILDTPSLL 183 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~~~~~ 183 (210)
|.|+++..+.++..++++.++.
T Consensus 166 g~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 166 GTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred CcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887664
No 73
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=6.5e-31 Score=192.69 Aligned_cols=157 Identities=32% Similarity=0.573 Sum_probs=136.2
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCc
Q 028329 20 IGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR 98 (210)
Q Consensus 20 ~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 98 (210)
+|++|||||||+++++.+.+...+ ++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999988886544 5888888888888888999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 99 DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 99 ~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
.+|..+.. |+..+.... .++|+++|+||+|+.. +.+..+. ..++...++.+++|||+++.|++++|.+|++.+.+
T Consensus 81 ~S~~~i~~-w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 81 VTYKNVPN-WHRDLVRVC--ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred HHHHHHHH-HHHHHHHhC--CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999987 999887643 5799999999999853 3334433 46777788999999999999999999999999977
Q ss_pred CCC
Q 028329 179 TPS 181 (210)
Q Consensus 179 ~~~ 181 (210)
...
T Consensus 156 ~~~ 158 (200)
T smart00176 156 DPN 158 (200)
T ss_pred ccc
Confidence 543
No 74
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=6.6e-31 Score=188.54 Aligned_cols=161 Identities=34% Similarity=0.608 Sum_probs=138.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|..+.+...+. +.+. .....+.+++..+.+.+||+||+..+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 789999999999999999999888765544 4443 34556677888899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEEccCCCCCHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l 172 (210)
|++++++++.... |...+.......+.|+++++||.|+...+....++...++..++ ++++++||+++.|++++|+++
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 9999999999987 77777654455689999999999997777777777777888887 789999999999999999999
Q ss_pred HHHHH
Q 028329 173 VLKIL 177 (210)
Q Consensus 173 ~~~~~ 177 (210)
...++
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 98664
No 75
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=4.7e-31 Score=192.99 Aligned_cols=158 Identities=23% Similarity=0.404 Sum_probs=126.5
Q ss_pred EEEEEEEcCCCCcHHHHHH-HHhcCCC-----CC-CCCCcee-eeEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 028329 14 LFKLLMIGDSGVGKSSLLL-SFTSDNF-----EE-LSPTIGV-DFKVKY--------VDVGGKKLKLAIWDTAGQERFRT 77 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~-~l~~~~~-----~~-~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~ 77 (210)
.+||+++|++|||||||+. ++.++.+ .. +.|+.+. +.+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 6655433 22 2345432 222211 25688899999999999865 2
Q ss_pred chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-------------------Ccee
Q 028329 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-------------------ERVV 138 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-------------------~~~~ 138 (210)
....+++++|++++|||++++.||+.+...|...+.... .+.|+++|+||+|+.. .+.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 445678999999999999999999999866888887643 4789999999999863 3677
Q ss_pred cHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHH
Q 028329 139 TKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 175 (210)
..+++..+++.++++|++|||++|.|++++|..+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8889999999999999999999999999999998864
No 76
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=4e-31 Score=187.58 Aligned_cols=154 Identities=23% Similarity=0.395 Sum_probs=128.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|||||||+.++..+.+...+++.+..+ ...+.+++..+.+.+||++|++. ..+++.+|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 489999999999999999999888866555433333 45678888889999999999864 245678999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHh-CCcEEEEccCCCCCHHHHHHH
Q 028329 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE--SERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~ 171 (210)
+++++||+++.. |+..+.......++|+++|+||.|+. ..+.+..+++..+++.. ++.|++|||+++.||+++|.+
T Consensus 75 ~~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 75 LENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 999999999988 77877765555679999999999984 35677778888888776 489999999999999999999
Q ss_pred HHHH
Q 028329 172 LVLK 175 (210)
Q Consensus 172 l~~~ 175 (210)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 9864
No 77
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=7.3e-31 Score=189.28 Aligned_cols=160 Identities=33% Similarity=0.600 Sum_probs=135.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|+|||||+++|+.+.+...+.+.........+.+++..+.+.+||++|+..+...+..++..+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999998886555433333444467778888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEEccCC
Q 028329 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAKT 161 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 161 (210)
++++.+|+.+...|...+... ..+.|+++|+||+|+... ..+..+++..++...+. ++++|||++
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999987688888754 567999999999998532 24566778888888886 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028329 162 RVNVQQCFEELVLKI 176 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~ 176 (210)
+.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998876
No 78
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=7.8e-31 Score=186.74 Aligned_cols=159 Identities=40% Similarity=0.690 Sum_probs=138.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|.+..+...+ ++.+.++....+..++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999998876543 47777777777888888889999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|+++++++..+.. |+..+.... ..+.|+++++||+|+........++...++...+++++++|++++.|++++|.++.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 81 DITNRQSFDNTDK-WIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999987 777765533 23699999999999976666777777888888889999999999999999999998
Q ss_pred HH
Q 028329 174 LK 175 (210)
Q Consensus 174 ~~ 175 (210)
+.
T Consensus 159 ~~ 160 (161)
T cd01861 159 SA 160 (161)
T ss_pred Hh
Confidence 75
No 79
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=1e-30 Score=186.19 Aligned_cols=159 Identities=72% Similarity=1.105 Sum_probs=139.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|.+..+.. ..++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999888755 4457777777777778888899999999999999988999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|++++.+++.+.. |+..+..+....+.|+++|+||+|+. ......++...++...+++++++|+++|.|+++++++++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999999999888 88888877777789999999999986 334556677888888899999999999999999999988
Q ss_pred HH
Q 028329 174 LK 175 (210)
Q Consensus 174 ~~ 175 (210)
+.
T Consensus 159 ~~ 160 (161)
T cd01863 159 EK 160 (161)
T ss_pred Hh
Confidence 75
No 80
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=1e-30 Score=188.39 Aligned_cols=158 Identities=31% Similarity=0.546 Sum_probs=135.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|+|||||++++..+.+...+.++..+.....+.+++..+.+.+||+||+..+...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999988887666644455555667788888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-cEEEEccCC
Q 028329 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVTKKEGINFAREYGC-LFIECSAKT 161 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~ 161 (210)
++++.+|+.+...|+..+... ..++|+++|+||.|+.. .+.+..+++..++...+. .++++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999876688777653 34689999999999853 345677788899988887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 028329 162 RVNVQQCFEELVL 174 (210)
Q Consensus 162 ~~~i~~~~~~l~~ 174 (210)
+.|++++|+.++.
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 81
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.98 E-value=5.1e-31 Score=188.58 Aligned_cols=160 Identities=33% Similarity=0.528 Sum_probs=133.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCcccc-ccchhhcccCccEEEEEE
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-RTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~~~~~~~~~~d~~i~v~ 93 (210)
||+++|++|||||||+++++.+.+...++ +.. ......+.+++..+.+.+||+||+..+ ......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChH-HhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 68999999999999999999887765444 433 233455677888899999999998753 345667788999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCC-CHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRV-NVQQCFEE 171 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~~~ 171 (210)
|++++++|+.+.. |...+..... ..++|+++|+||+|+...+.+..+++..++...+.+++++||+++. |++++|.+
T Consensus 80 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 80 SITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence 9999999999988 7777776543 4579999999999997777777888888898889999999999995 99999999
Q ss_pred HHHHHH
Q 028329 172 LVLKIL 177 (210)
Q Consensus 172 l~~~~~ 177 (210)
+.+.+.
T Consensus 159 l~~~~~ 164 (165)
T cd04146 159 LCREVR 164 (165)
T ss_pred HHHHHh
Confidence 998764
No 82
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.98 E-value=2e-30 Score=186.54 Aligned_cols=165 Identities=39% Similarity=0.696 Sum_probs=139.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|.+..+..... +.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999888765443 6676777777788888899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhcc---CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEEccCCCCCHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYST---NQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~---~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~ 169 (210)
|++++.+++.... |...+..... ..++|+++|+||+|+..+.....++...+....+ .+++++|+++|.|++++|
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 81 DVTNPKSFESLDS-WRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF 159 (172)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence 9999999988876 6665544332 3378999999999997666666777777777777 789999999999999999
Q ss_pred HHHHHHHHcCC
Q 028329 170 EELVLKILDTP 180 (210)
Q Consensus 170 ~~l~~~~~~~~ 180 (210)
+++.+.+++..
T Consensus 160 ~~i~~~~~~~~ 170 (172)
T cd01862 160 ETIARKALEQE 170 (172)
T ss_pred HHHHHHHHhcc
Confidence 99999887763
No 83
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.98 E-value=1.5e-30 Score=194.16 Aligned_cols=165 Identities=31% Similarity=0.409 Sum_probs=137.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc-CccEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR-GAQGIIM 91 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~d~~i~ 91 (210)
+||+++|++|||||||+++|..+.+. ..++ +.+.++....+.+++....+.+||++|.+. .....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999888775 4444 444466677778888899999999999872 23344556 8999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEE 171 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 171 (210)
|||++++.+|+.+.. |+..+.......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus 79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 999999999999988 7777766544567999999999999877778888888888888899999999999999999999
Q ss_pred HHHHHHcCCCc
Q 028329 172 LVLKILDTPSL 182 (210)
Q Consensus 172 l~~~~~~~~~~ 182 (210)
+.+.+......
T Consensus 158 l~~~~~~~~~~ 168 (221)
T cd04148 158 IVRQIRLRRDS 168 (221)
T ss_pred HHHHHHhhhcc
Confidence 99999754444
No 84
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.98 E-value=2.2e-30 Score=184.42 Aligned_cols=160 Identities=41% Similarity=0.741 Sum_probs=137.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|+|||||+++|+.+.+...+. +...+.....+...+..+.+.+||++|+..+...+..++.++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999888765443 5555555566667778889999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|+++.++++.+.. |...+...... ++|+++++||+|+.....+..+++..++...+.+++++|++++.|++++|+++.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~-~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 81 DITDADSFQKVKK-WIKELKQMRGN-NISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCC-CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999887 87777765433 799999999999987666777777888888899999999999999999999998
Q ss_pred HHH
Q 028329 174 LKI 176 (210)
Q Consensus 174 ~~~ 176 (210)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04123 159 KRM 161 (162)
T ss_pred HHh
Confidence 865
No 85
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.98 E-value=2.3e-30 Score=184.92 Aligned_cols=159 Identities=33% Similarity=0.523 Sum_probs=133.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC--CCCCCC-CCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD--NFEELS-PTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~--~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
+||+++|++|||||||+++|..+ .+...+ ++.+.++....+.+. +..+.+.+||++|...+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 454444 477777766666664 56799999999999998888999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
+|||+++++++..+.. |+..+.... .++|+++|+||.|+.....+...+...+....+++++++||+++.|++++|+
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 157 (164)
T cd04101 81 LVYDVSNKASFENCSR-WVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFE 157 (164)
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHH
Confidence 9999999999998877 877776542 5689999999999976666666666677777788999999999999999999
Q ss_pred HHHHHH
Q 028329 171 ELVLKI 176 (210)
Q Consensus 171 ~l~~~~ 176 (210)
++.+.+
T Consensus 158 ~l~~~~ 163 (164)
T cd04101 158 SLARAF 163 (164)
T ss_pred HHHHHh
Confidence 998865
No 86
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.4e-30 Score=185.72 Aligned_cols=163 Identities=22% Similarity=0.285 Sum_probs=135.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
...+||+++|++|||||||+++|+++.+. ..+ ++.+.++....+.+++....+.+||++|...+...+..++..+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35799999999999999999999999886 444 4777777666677888888999999999999988888889999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCHHHH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQQC 168 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~ 168 (210)
++|||++++.+++.+.. |...+.. ..++|+++|+||.|+.........+...++..+++ .++++||+++.|++++
T Consensus 82 llv~d~~~~~s~~~~~~-~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (169)
T cd01892 82 CLVYDSSDPKSFSYCAE-VYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNEL 157 (169)
T ss_pred EEEEeCCCHHHHHHHHH-HHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHH
Confidence 99999999999998877 6665432 24689999999999965544433445666777777 4799999999999999
Q ss_pred HHHHHHHHHc
Q 028329 169 FEELVLKILD 178 (210)
Q Consensus 169 ~~~l~~~~~~ 178 (210)
|+.+.+.+..
T Consensus 158 f~~l~~~~~~ 167 (169)
T cd01892 158 FTKLATAAQY 167 (169)
T ss_pred HHHHHHHhhC
Confidence 9999998763
No 87
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=2.1e-30 Score=195.75 Aligned_cols=160 Identities=26% Similarity=0.444 Sum_probs=134.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|||||||+++|+.+.+...+. +.+ ++....+.+++..+.+.|||++|+..+...+..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988876554 443 555666788888999999999999988888888889999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhc--------cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCcEEEEccCCCCC
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYS--------TNQDCIKLLVGNKVDKESERVVTKKEGINFARE-YGCLFIECSAKTRVN 164 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~ 164 (210)
|+++.++|+.+.. |...+.... ...++|++||+||+|+...+.+..+++..++.. .++.++++||+++.|
T Consensus 80 dv~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~g 158 (247)
T cd04143 80 SLDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSN 158 (247)
T ss_pred eCCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence 9999999999987 666665431 235789999999999976666777777776654 367899999999999
Q ss_pred HHHHHHHHHHHH
Q 028329 165 VQQCFEELVLKI 176 (210)
Q Consensus 165 i~~~~~~l~~~~ 176 (210)
++++|.+|....
T Consensus 159 I~elf~~L~~~~ 170 (247)
T cd04143 159 LDEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHHh
Confidence 999999999865
No 88
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=4.3e-30 Score=183.31 Aligned_cols=163 Identities=37% Similarity=0.603 Sum_probs=136.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|||||||+++++...+...+..............++..+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999988876544422223344556778888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 174 (210)
++++.++..+.. |...+.......++|+++|+||+|+.........+...+...++++++++||+++.|++++|.++.+
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 81 ITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 999999999988 5555555444567999999999999765555666677788888899999999999999999999998
Q ss_pred HHHc
Q 028329 175 KILD 178 (210)
Q Consensus 175 ~~~~ 178 (210)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 8753
No 89
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-30 Score=172.70 Aligned_cols=169 Identities=51% Similarity=0.827 Sum_probs=155.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
.+.+|.+++|+-|+|||+|++.+...+|...-| +.+.++....+.+.+..+++++||++|++.++...+.+++++.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 467999999999999999999999999877777 9999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
+|||++...++..+.. |+...+. ...++..+++++||.|++..+.+..++++.++.+.|..++++|+++|.++++.|-
T Consensus 89 mvyditrrstynhlss-wl~dar~-ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSS-WLTDARN-LTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred EEEEehhhhhhhhHHH-HHhhhhc-cCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 9999999999999988 8877765 4567788899999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHcCCCc
Q 028329 171 ELVLKILDTPSL 182 (210)
Q Consensus 171 ~l~~~~~~~~~~ 182 (210)
.....+.++-+.
T Consensus 167 e~akkiyqniqd 178 (215)
T KOG0097|consen 167 ETAKKIYQNIQD 178 (215)
T ss_pred HHHHHHHHhhhc
Confidence 888888776554
No 90
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=4.2e-30 Score=189.04 Aligned_cols=168 Identities=29% Similarity=0.444 Sum_probs=135.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
||+++|++|||||||+++|+.+.+...+...........+.+.+..+.+.+||++|+..+..++..++..+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999988876554222245555677788889999999999999888888899999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC-CceecHHHHHHHHH-HhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES-ERVVTKKEGINFAR-EYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
+++.+++.+.. |...+.......++|++||+||+|+.. .+.+..++...... ..+++++++||++|.|++++|+++.
T Consensus 81 ~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 81 DDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 99999999987 766666555556799999999999865 34455544444443 4467899999999999999999999
Q ss_pred HHHHcCCCccc
Q 028329 174 LKILDTPSLLA 184 (210)
Q Consensus 174 ~~~~~~~~~~~ 184 (210)
+.+.......+
T Consensus 160 ~~~~~~~~~~~ 170 (198)
T cd04147 160 RQANLPYNLSP 170 (198)
T ss_pred HHhhcccccch
Confidence 98865544444
No 91
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=3.1e-29 Score=182.85 Aligned_cols=163 Identities=35% Similarity=0.530 Sum_probs=133.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
.||+++|++|+|||||++++..+.+...+. +.... ....+.+++..+.+.+||++|+..+.......+..+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFEN-YVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccce-EEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 589999999999999999999777755443 33333 3345667788889999999999888777777788999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC----------CceecHHHHHHHHHHhCC-cEEEEccCCC
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES----------ERVVTKKEGINFAREYGC-LFIECSAKTR 162 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~ 162 (210)
|+++.+++..+...|...+... ..++|+++|+||.|+.. .+.+..+++..++...+. ++++|||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999986688888754 34699999999999843 234455677888888885 7999999999
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 028329 163 VNVQQCFEELVLKILDTP 180 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~~~ 180 (210)
.|++++|+++.+.++..+
T Consensus 159 ~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 159 EGVDDVFEAATRAALLVR 176 (187)
T ss_pred CCHHHHHHHHHHHHhccc
Confidence 999999999998886655
No 92
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=4e-29 Score=179.33 Aligned_cols=163 Identities=44% Similarity=0.816 Sum_probs=138.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...++|+++|++|||||||++++..+.+... .++.+.++....+.+++..+.+.+||++|+..+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999997776543 346666676777788888899999999999999988889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
+|||+++..+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+....+......+++++|+++|.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 162 (169)
T cd04114 85 LTYDITCEESFRCLPE-WLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFL 162 (169)
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999998877 887776543 34689999999999977776666666777776778899999999999999999
Q ss_pred HHHHHH
Q 028329 171 ELVLKI 176 (210)
Q Consensus 171 ~l~~~~ 176 (210)
++.+.+
T Consensus 163 ~i~~~~ 168 (169)
T cd04114 163 DLACRL 168 (169)
T ss_pred HHHHHh
Confidence 998765
No 93
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=7.9e-30 Score=183.11 Aligned_cols=160 Identities=24% Similarity=0.437 Sum_probs=125.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
||+++|+++||||||+++|.+..+..+.++.+.... .+. ...+.+.+||+||+..+...+..+++++|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~--~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVE--YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEE--ECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 689999999999999999998877655556554443 222 3467899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC------CcEEEEccCCCCCHHHHH
Q 028329 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG------CLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~ 169 (210)
++++++..+.. |+..+.......+.|++||+||+|+... ...+++..++...+ +.++++||++|.|++++|
T Consensus 77 s~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 77 SHRDRVSEAHS-ELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CcHHHHHHHHH-HHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 99999999988 4444433222345899999999998643 45555555553221 258899999999999999
Q ss_pred HHHHHHHHcCCCc
Q 028329 170 EELVLKILDTPSL 182 (210)
Q Consensus 170 ~~l~~~~~~~~~~ 182 (210)
+||.+.+.+..++
T Consensus 154 ~~l~~~~~~~~~~ 166 (169)
T cd04158 154 DWLSRQLVAAGVL 166 (169)
T ss_pred HHHHHHHhhcccc
Confidence 9999988877654
No 94
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=2.7e-29 Score=181.27 Aligned_cols=159 Identities=34% Similarity=0.631 Sum_probs=131.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
.||+++|++|||||||+++|..+.+...+. +.+..+ ...+.+++..+.+.+||++|++.+...+...+.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 689999999999999999999988876554 444333 345677888899999999999999888888899999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEEccC
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIECSAK 160 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~ 160 (210)
|+++.++++.+...|...+... ..+.|+++|+||.|+... ..+...++..++...+. ++++|||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999977688877653 347899999999998542 22345667777777765 79999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028329 161 TRVNVQQCFEELVLKI 176 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~ 176 (210)
+|.|++++|+++.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998764
No 95
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=4.3e-30 Score=186.71 Aligned_cols=167 Identities=25% Similarity=0.370 Sum_probs=131.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||++++..+.+....++.+.+.....+.. ++..+.+.+||++|.+.+...+..+++++|++++|
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 82 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV 82 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999998888766666666665555544 44678999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH--Hh----CCcEEEEccCCCCCHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR--EY----GCLFIECSAKTRVNVQ 166 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~--~~----~~~~~~~sa~~~~~i~ 166 (210)
+|+++..++..+.. |+..+.......+.|++||+||+|+... ...++...+.. .. .++++++||+++.|++
T Consensus 83 ~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 83 VDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 99999988888877 6655554444567999999999998642 23333333332 11 2458899999999999
Q ss_pred HHHHHHHHHHHcCCCcc
Q 028329 167 QCFEELVLKILDTPSLL 183 (210)
Q Consensus 167 ~~~~~l~~~~~~~~~~~ 183 (210)
++|++|.+.+.+.++-.
T Consensus 160 ~l~~~l~~~l~~~~~~~ 176 (183)
T cd04152 160 EGLEKLYEMILKRRKML 176 (183)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999997655443
No 96
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=5.5e-30 Score=183.68 Aligned_cols=155 Identities=24% Similarity=0.361 Sum_probs=122.2
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
..+||+++|++|||||||+++|..+.+....++.+.++.. +. ...+.+.+||++|+..++..+..++..+|++++|
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET--VT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 3589999999999999999999987776655666655432 22 2468899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----hCCcEEEEccCCCCCHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----YGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~ 167 (210)
||++++.++.+...+|...+.. ....++|++||+||+|+... ...+++..+... ....++++||++|.|+++
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 84 VDSADRDRIDEARQELHRIIND-REMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcC-HhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 9999999999998855555543 22346899999999998642 344555554421 224689999999999999
Q ss_pred HHHHHHH
Q 028329 168 CFEELVL 174 (210)
Q Consensus 168 ~~~~l~~ 174 (210)
+|+||.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 97
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.2e-29 Score=183.95 Aligned_cols=161 Identities=22% Similarity=0.370 Sum_probs=123.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
+..+||+++|+++||||||++++..+.+....|+.+.+.. .+. ...+.+.+||+||++.++.+|..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4568999999999999999999998777665567665543 233 345789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-----CcEEEEccCCCCCHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-----CLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~ 166 (210)
|||+++++++......+...+.. ....++|++|++||+|++... ..++......... +.++++||++|.|++
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~-~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcC-HhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 99999999999888745444432 223578999999999986543 2233222221111 235689999999999
Q ss_pred HHHHHHHHHHHcC
Q 028329 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++|+||.+.+.++
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887654
No 98
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=3.7e-29 Score=181.40 Aligned_cols=165 Identities=35% Similarity=0.549 Sum_probs=136.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
.||+++|++|||||||++++....+...+. +....+ ...+..++..+.+.+||+||+..+...+..++..+|+++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 689999999999999999999888765443 333222 344566777889999999999999989999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|.++..+++.+..+|...+. .....+.|+++|+||+|+...+.+..++...++..++.+++++||+++.|+.++|.++.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILD-MLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999885554444 34456789999999999976666666667777777888999999999999999999999
Q ss_pred HHHHcCCC
Q 028329 174 LKILDTPS 181 (210)
Q Consensus 174 ~~~~~~~~ 181 (210)
+.+.+...
T Consensus 160 ~~~~~~~~ 167 (180)
T cd04137 160 EEIEKVEN 167 (180)
T ss_pred HHHHHhcC
Confidence 98876553
No 99
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=3.3e-29 Score=177.39 Aligned_cols=157 Identities=55% Similarity=0.940 Sum_probs=139.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|+++||||||++++.+..+... .++.+.++....+...+....+.+||+||...+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988765 458888888888888888899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
|+++++++..+.. |+..+.... ....|+++++||+|+........++...++...+.+++++|++++.|++++|++|.
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDK-WLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 9999999999888 887776643 25689999999999975666777888888888899999999999999999999986
No 100
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=3.8e-29 Score=179.73 Aligned_cols=158 Identities=34% Similarity=0.603 Sum_probs=132.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|||||||+++|+++.+...+...............+..+.+.+||+||+..+.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999999885444433344455556778889999999999999888888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc-----------eecHHHHHHHHHHhCC-cEEEEccCCC
Q 028329 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER-----------VVTKKEGINFAREYGC-LFIECSAKTR 162 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~sa~~~ 162 (210)
.+++.++.....+|+..+..+. .++|+++|+||+|+.... .+..+++..+....+. +++++|++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999998887888777643 379999999999986554 2356677888888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q 028329 163 VNVQQCFEELVL 174 (210)
Q Consensus 163 ~~i~~~~~~l~~ 174 (210)
.|++++|+++.+
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 101
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=4.1e-29 Score=177.48 Aligned_cols=159 Identities=38% Similarity=0.627 Sum_probs=134.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
||+++|++|||||||++++++..+...+.....+.....+..++..+.+.+||+||+..+...+..++..+|++++|||.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999887655544222255556667777789999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHH
Q 028329 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 175 (210)
++++++..+.. |...+........+|+++|+||+|+...+....+++..++...+.+++++|++++.|++++|.+|.+.
T Consensus 81 ~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 81 TDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 99999999988 55555544444679999999999998767778888888888888999999999999999999999875
No 102
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=6.2e-30 Score=184.60 Aligned_cols=158 Identities=22% Similarity=0.370 Sum_probs=121.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|++|||||||++++..+.+....|+.+..+.. +.. ..+.+.+||+||+..+...+..+++++|++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 34699999999999999999999877776555566655432 233 45789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 166 (210)
|||+++++++......|...+.. ....++|++||+||.|+.... ..+++..... ...+.++++||++|.|++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNE-DELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhC-HhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 99999999999988855554443 223568999999999986432 2222222211 112347789999999999
Q ss_pred HHHHHHHHHH
Q 028329 167 QCFEELVLKI 176 (210)
Q Consensus 167 ~~~~~l~~~~ 176 (210)
++|+||.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998775
No 103
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=4.7e-30 Score=182.48 Aligned_cols=153 Identities=22% Similarity=0.395 Sum_probs=117.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|.++||||||++++..+.+....|+.+.... .+.. ..+.+.+||+||+..+...+..+++++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 4899999999999999999987777665566665443 2232 46889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHHHHH
Q 028329 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 169 (210)
+++..++.....+|...+.. ....+.|++|++||+|+.... ..++...... ...+.++++||++|.|++++|
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 77 SNDRERIGEAREELQRMLNE-DELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhc-HHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 99999999998855555443 223468999999999986432 2222222111 123357899999999999999
Q ss_pred HHHHH
Q 028329 170 EELVL 174 (210)
Q Consensus 170 ~~l~~ 174 (210)
+||.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 104
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=1.6e-29 Score=180.36 Aligned_cols=168 Identities=32% Similarity=0.566 Sum_probs=151.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
...+|++++|+.++|||+|+-.+..+.|+..+.++-++-+...+.++ +..+.+.+|||+|++.|..++...+..+|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35799999999999999999999999999888766667778888995 99999999999999999999888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cEEEE
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVTKKEGINFAREYGC-LFIEC 157 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (210)
++|++.+++||+++...|+..+..++ +++|+|+||+|.||... ..+..+++..+++..|+ .|++|
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 99999999999999999999999875 78999999999999632 35677889999999995 69999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCC
Q 028329 158 SAKTRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~~~~~~~ 181 (210)
||+++.|++++|+..++..+...+
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999999987765
No 105
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.5e-29 Score=183.66 Aligned_cols=162 Identities=23% Similarity=0.399 Sum_probs=123.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|++|||||||++++..+.+....++.+.++.. +. ...+.+.+||++|++.++..+..+++.+|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~--~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVET--VE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEE--EE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 34589999999999999999999887776655666655432 22 245789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 166 (210)
|||+++++++......+...+... ...++|++||+||.|++... ..+++..... ...+.++++||++|.|++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSED-ELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCH-hhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999887555554432 23468999999999986432 2222222111 112346789999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028329 167 QCFEELVLKILDTP 180 (210)
Q Consensus 167 ~~~~~l~~~~~~~~ 180 (210)
++|+||.+.+.+..
T Consensus 168 e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 168 EGLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999886653
No 106
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.2e-28 Score=176.47 Aligned_cols=161 Identities=30% Similarity=0.431 Sum_probs=126.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|++|||||||+++|..+.+...+++....+ .....+.+..+.+.+||++|...+...+...+..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 489999999999999999999998866555332222 2334556778899999999998887777788899999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHHhC--CcEEEEccCCCCCHHHHHH
Q 028329 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAREYG--CLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~ 170 (210)
++++.+++.+...|...++... .+.|+++|+||+|+.+.... ..++...+..... .+++++||+++.|++++|.
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 9999999998766888887643 47999999999999655432 1222333333332 3799999999999999999
Q ss_pred HHHHHHHc
Q 028329 171 ELVLKILD 178 (210)
Q Consensus 171 ~l~~~~~~ 178 (210)
.+...+..
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887754
No 107
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=4.3e-29 Score=179.95 Aligned_cols=158 Identities=22% Similarity=0.338 Sum_probs=122.5
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
.....++|+++|++|||||||+++|.+..+....++.+... ..+.++ .+.+.+||+||+..++..+..+++.+|++
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 34566999999999999999999999886655555665433 333443 47799999999999888999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCC
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVN 164 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~ 164 (210)
++|||++++.++.....++...+. .....++|++||+||+|+.... ..+++..+.. ..+++++++||++|.|
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 162 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQ-EERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEG 162 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHh-ChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence 999999999999888773434433 2234579999999999986543 3344444442 2356799999999999
Q ss_pred HHHHHHHHHH
Q 028329 165 VQQCFEELVL 174 (210)
Q Consensus 165 i~~~~~~l~~ 174 (210)
++++|+++..
T Consensus 163 i~~l~~~l~~ 172 (173)
T cd04154 163 LLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 108
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=9.6e-29 Score=179.94 Aligned_cols=169 Identities=37% Similarity=0.535 Sum_probs=151.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
..+||+++|.+|+|||+|..++..+.|...+..+..+.+...+.+++..+.+.++|++|+.++..+...++.++|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 35899999999999999999999999988776444477788899999999999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 172 (210)
|++++..||+.+.. ++..+.+......+|+++||||+|+...+.+..+++..++..++++|+|+||+.+.+++++|..|
T Consensus 82 ysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 99999999999999 55666554555678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCc
Q 028329 173 VLKILDTPSL 182 (210)
Q Consensus 173 ~~~~~~~~~~ 182 (210)
.+.+...+..
T Consensus 161 ~r~~~~~~~~ 170 (196)
T KOG0395|consen 161 VREIRLPREG 170 (196)
T ss_pred HHHHHhhhcc
Confidence 9988764433
No 109
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=2.5e-30 Score=170.11 Aligned_cols=163 Identities=39% Similarity=0.707 Sum_probs=148.5
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCC--CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCC
Q 028329 19 MIGDSGVGKSSLLLSFTSDNFEELS--PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT 96 (210)
Q Consensus 19 v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 96 (210)
++|++++|||+|+-|+..+.|.... .+.+.++....+.+++..+++++|||+|++.+++....+++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999999887775433 38889999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 97 RRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 97 ~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
+..||++... |+..+..|... .+.+.+++||+|+..++.+..++.+.++..+++|+.++||++|.|++..|-.|.+.+
T Consensus 82 nkasfdn~~~-wlsei~ey~k~-~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 82 NKASFDNCQA-WLSEIHEYAKE-AVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred cchhHHHHHH-HHHHHHHHHHh-hHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence 9999999999 99999988644 577889999999999999999999999999999999999999999999999999998
Q ss_pred HcCCCcc
Q 028329 177 LDTPSLL 183 (210)
Q Consensus 177 ~~~~~~~ 183 (210)
.+..-..
T Consensus 160 ~k~~~~~ 166 (192)
T KOG0083|consen 160 KKLKMGA 166 (192)
T ss_pred HHhccCC
Confidence 7765443
No 110
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=7.5e-29 Score=177.15 Aligned_cols=151 Identities=24% Similarity=0.320 Sum_probs=118.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
|+++|++|||||||+++|.++.+...+ |+.+... ..+++..+.+.+||++|+..++..+..+++++|++++|||.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 789999999999999999988765433 4555432 23445678899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH----HHHHHHHHHhCCcEEEEccCC------CCCH
Q 028329 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK----KEGINFAREYGCLFIECSAKT------RVNV 165 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~sa~~------~~~i 165 (210)
+++.++..... |+..+... ..++|+++|+||.|+...+.... .++..++...++.++++||++ ++|+
T Consensus 78 t~~~s~~~~~~-~l~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v 154 (164)
T cd04162 78 ADSERLPLARQ-ELHQLLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV 154 (164)
T ss_pred CCHHHHHHHHH-HHHHHHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence 99999988887 54544322 26799999999999976553321 123445555677899999988 9999
Q ss_pred HHHHHHHHH
Q 028329 166 QQCFEELVL 174 (210)
Q Consensus 166 ~~~~~~l~~ 174 (210)
+++|+.++.
T Consensus 155 ~~~~~~~~~ 163 (164)
T cd04162 155 KDLLSQLIN 163 (164)
T ss_pred HHHHHHHhc
Confidence 999998864
No 111
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=6.1e-27 Score=174.36 Aligned_cols=173 Identities=32% Similarity=0.547 Sum_probs=142.5
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
......+||+++|++|||||||++++..+.+.. +.++.+.++....+..++..+.+.+||++|+..+...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 344556999999999999999998887777754 4458888887777777888999999999999998888888899999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
++++|||+++..++..+.. |...+... ..++|+++++||.|+.... ... +...++...++.++++|++++.|+++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~--~~~~~i~lv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPN-WHRDIVRV--CENIPIVLVGNKVDVKDRQ-VKA-RQITFHRKKNLQYYDISAKSNYNFEK 158 (215)
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECccCcccc-CCH-HHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999987 77777654 2568999999999985432 222 23456677788999999999999999
Q ss_pred HHHHHHHHHHcCCCccccc
Q 028329 168 CFEELVLKILDTPSLLAEG 186 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~~~~~ 186 (210)
.|.+|++.+......+--+
T Consensus 159 ~f~~ia~~l~~~p~~~~ld 177 (215)
T PTZ00132 159 PFLWLARRLTNDPNLVFVG 177 (215)
T ss_pred HHHHHHHHHhhcccceecC
Confidence 9999999998877765443
No 112
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=8.8e-28 Score=173.25 Aligned_cols=155 Identities=23% Similarity=0.392 Sum_probs=120.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
..++|+++|++|||||||+++++.+.+....++.+.++.. +.. ....+.+||+||+..+...+..++..+|++++|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEE--IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEE--EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 3589999999999999999999988887666666655432 333 357899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEEccCCCCCHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~ 167 (210)
+|+++.+++......+...+.. ....++|+++++||+|+... ...++..... ...+++++++||+++.|+++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~-~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAH-EDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 9999999988887745544443 22356899999999998642 2333322221 22345689999999999999
Q ss_pred HHHHHHH
Q 028329 168 CFEELVL 174 (210)
Q Consensus 168 ~~~~l~~ 174 (210)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999864
No 113
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=4e-27 Score=172.61 Aligned_cols=148 Identities=26% Similarity=0.392 Sum_probs=121.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC-----CeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG-----GKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+||+++|+++||||||++++..+.+...+. +.+.++....+.+. +..+.+.+||++|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999998866544 77777766666653 567899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhc------------------cCCCCcEEEEEeCCCCCCCceecHHH----HHHH
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYS------------------TNQDCIKLLVGNKVDKESERVVTKKE----GINF 146 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------------~~~~~piivv~nK~D~~~~~~~~~~~----~~~~ 146 (210)
+|+|||+++.+||+++.. |+..+.... ...++|++|||||.|+..++.+..+. ...+
T Consensus 81 iIlVyDvtn~~Sf~~l~~-W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQR-WSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHH-HHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhH
Confidence 999999999999999987 888776532 12468999999999997665444432 4456
Q ss_pred HHHhCCcEEEEccCCCC
Q 028329 147 AREYGCLFIECSAKTRV 163 (210)
Q Consensus 147 ~~~~~~~~~~~sa~~~~ 163 (210)
+...+++.++.++++..
T Consensus 160 a~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 160 AEQGNAEEINLNCTNGR 176 (202)
T ss_pred HHhcCCceEEEecCCcc
Confidence 77789998888887654
No 114
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=1.3e-27 Score=172.26 Aligned_cols=159 Identities=29% Similarity=0.439 Sum_probs=127.5
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
....++|+++|..|||||||+++|..+......||.+.+.. .+.+. .+.+.+||++|+..+++.|..++.++|++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~--~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIE--EIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEE--EEEET--TEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccc--eeeeC--cEEEEEEeccccccccccceeeccccceeE
Confidence 36789999999999999999999998776655566665544 34443 467899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------hCCcEEEEccCCCCC
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE------YGCLFIECSAKTRVN 164 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~ 164 (210)
||+|.++.+.+.+....+...+.. ....++|++|++||+|++.. ...+++...... ..+.++.|||.+|.|
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~-~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLND-PELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTS-GGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEecccceeecccccchhhhcch-hhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 999999999999998866666654 33457999999999998643 344444444332 234589999999999
Q ss_pred HHHHHHHHHHHH
Q 028329 165 VQQCFEELVLKI 176 (210)
Q Consensus 165 i~~~~~~l~~~~ 176 (210)
+.+.|+||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999865
No 115
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=8.9e-28 Score=170.85 Aligned_cols=153 Identities=24% Similarity=0.388 Sum_probs=116.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
+|+++|++|||||||+++|.+..+....++.+.+.... .. +....+.+||+||+..+...+..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~--~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEML--QL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEE--Ee-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 58999999999999999999988876666666544332 22 2457899999999999988898899999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH------HHhCCcEEEEccCCCCCHHHHH
Q 028329 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA------REYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
+++.++.....++...+.. ....+.|+++|+||+|++... ...++.... ...++++++|||++|.|++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 78 SDEARLDESQKELKHILKN-EHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CcHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 9999888887744444433 223579999999999985421 222222211 1123468999999999999999
Q ss_pred HHHHH
Q 028329 170 EELVL 174 (210)
Q Consensus 170 ~~l~~ 174 (210)
.+|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 116
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=1.8e-27 Score=174.03 Aligned_cols=156 Identities=22% Similarity=0.327 Sum_probs=121.1
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
+.++|+++|++|||||||+++|.++.+..+.++.+.+. ..+.++ ...+.+||+||+..+...+..++..+|++++|
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999887765555555433 334444 36789999999998888889999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH----------------hCCcEEE
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE----------------YGCLFIE 156 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 156 (210)
+|+++.+++.....++...+. .....+.|++|++||+|+.. .+..+++...... ...++++
T Consensus 94 ~D~~~~~s~~~~~~~~~~i~~-~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T cd00879 94 VDAADPERFQESKEELDSLLS-DEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM 170 (190)
T ss_pred EECCcHHHHHHHHHHHHHHHc-CccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence 999999998888774444443 23345699999999999864 3444555555432 1245899
Q ss_pred EccCCCCCHHHHHHHHHHH
Q 028329 157 CSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 157 ~sa~~~~~i~~~~~~l~~~ 175 (210)
|||+++.|++++|+||.+.
T Consensus 171 ~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 171 CSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEecCCCChHHHHHHHHhh
Confidence 9999999999999999865
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=6.9e-28 Score=172.68 Aligned_cols=154 Identities=22% Similarity=0.353 Sum_probs=115.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
+|+++|++|||||||+++|.+.....+.++.+.+. ..+.. ..+.+.+||+||+..++..+..+++++|++++|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 48999999999999999999763334445666543 23333 457899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec----HHHHHHHHHHhC--CcEEEEccCCC------C
Q 028329 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT----KKEGINFAREYG--CLFIECSAKTR------V 163 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~----~~~~~~~~~~~~--~~~~~~sa~~~------~ 163 (210)
++..++..+.. |+..+.......++|+++|+||.|++..+... ......++...+ +.+++|||++| .
T Consensus 77 s~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 77 SDDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CchhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 99999999888 55555443334578999999999997654211 111122222222 45788999998 8
Q ss_pred CHHHHHHHHHH
Q 028329 164 NVQQCFEELVL 174 (210)
Q Consensus 164 ~i~~~~~~l~~ 174 (210)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999964
No 118
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=8.8e-28 Score=170.63 Aligned_cols=152 Identities=24% Similarity=0.342 Sum_probs=115.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
||+++|+++||||||+++|..+.+....++.+.+.. .+. +....+.+||+||+..+...+..++..+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 689999999999999999988777655555555443 222 2457899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHHHHHH
Q 028329 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
+++.++......|...+... ...++|+++|+||+|+.+.. ...+...... ..+.+++++||+++.|++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEE-ELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCHHHHHHHHHHHHHHHhch-hhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99888877766455554432 23468999999999986443 1222211111 1124699999999999999999
Q ss_pred HHHH
Q 028329 171 ELVL 174 (210)
Q Consensus 171 ~l~~ 174 (210)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9865
No 119
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.95 E-value=2.5e-27 Score=161.10 Aligned_cols=165 Identities=20% Similarity=0.336 Sum_probs=135.9
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+..++.++|+++|..||||||++++|.+.......|+.+.......+ ..+.+.+||.+|+..+++.|..+|..+|+
T Consensus 11 k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 11 KLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred HhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 44567999999999999999999999998877777788866655444 56889999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc---eec-HHHHHHHHHHhCCcEEEEccCCCCC
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER---VVT-KKEGINFAREYGCLFIECSAKTRVN 164 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~---~~~-~~~~~~~~~~~~~~~~~~sa~~~~~ 164 (210)
+|+|+|.+|+..+++....+...+.. ..-...|++|++||.|++..- .+. .-+...+++...++++.||+.+|++
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~e-erlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~ 165 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVE-ERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGED 165 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhh-hhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence 99999999999999988866666553 344568999999999997321 111 1123455567788999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 028329 165 VQQCFEELVLKILD 178 (210)
Q Consensus 165 i~~~~~~l~~~~~~ 178 (210)
+.+-++|+...+.+
T Consensus 166 l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 166 LLEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999887
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=1.7e-27 Score=169.03 Aligned_cols=152 Identities=24% Similarity=0.408 Sum_probs=118.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
||+++|++|||||||++++++.......++.+.+.... .+ ....+.+||+||+..+...+..++..+|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETV--EY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEE--EE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 68999999999999999999888655555666554432 33 357899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHHHHHH
Q 028329 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
++++++.....++...+. .....+.|+++++||+|+.... ..++...... ...++++++||++|.|++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~-~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 77 SDRERIEEAKEELHKLLN-EEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCHHHHHHHHHHHHHHHh-CcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999998884444444 3345689999999999986543 2222333222 2345799999999999999999
Q ss_pred HHHH
Q 028329 171 ELVL 174 (210)
Q Consensus 171 ~l~~ 174 (210)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 121
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=2e-27 Score=169.33 Aligned_cols=152 Identities=20% Similarity=0.313 Sum_probs=112.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-C-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNF-E-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+|+++|++|||||||+++|.+..+ . ...++.+.+... +. ...+.+.+||+||+..+...+..++..+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 2 334466544332 22 34678999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhc--cCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYS--TNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 166 (210)
|++++.++..... |+..+.... ...++|+++|+||+|+..... ..+...... ....+++++||++|.|++
T Consensus 77 D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 77 DSSDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred eCCcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 9999999888776 444443211 235799999999999864321 222222111 112358999999999999
Q ss_pred HHHHHHHH
Q 028329 167 QCFEELVL 174 (210)
Q Consensus 167 ~~~~~l~~ 174 (210)
++|+||.+
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999864
No 122
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=2.3e-29 Score=173.50 Aligned_cols=180 Identities=28% Similarity=0.476 Sum_probs=161.4
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
..-+..||++++|..++||||+|+++|.+-|...+. +.+.++....+.+.+..+.+.+||++|++++.....++++++.
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence 444678999999999999999999999998877776 9999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
+.++||+.+|..||+.... |.+.+.. ....+|.++|-||+|+.+...+...+++.+++.+...++.+|++...|+..
T Consensus 95 a~vLVFSTTDr~SFea~~~-w~~kv~~--e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~ 171 (246)
T KOG4252|consen 95 ASVLVFSTTDRYSFEATLE-WYNKVQK--ETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMH 171 (246)
T ss_pred ceEEEEecccHHHHHHHHH-HHHHHHH--HhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHH
Confidence 9999999999999999999 7777764 346799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCc-ccccccCcc
Q 028329 168 CFEELVLKILDTPSL-LAEGSKGLK 191 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~-~~~~~~~~~ 191 (210)
+|.+|++.+.+...+ +.+...+..
T Consensus 172 vF~YLaeK~~q~~kq~~~~~~~~q~ 196 (246)
T KOG4252|consen 172 VFAYLAEKLTQQKKQSLNANERKQS 196 (246)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhcc
Confidence 999999999877666 444444333
No 123
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=7.5e-27 Score=169.81 Aligned_cols=157 Identities=20% Similarity=0.294 Sum_probs=119.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...++|+++|.+|||||||++++.++.+..+.++.+.+.. .+.+. .+.+.+||+||+..+...+..++.++|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE--ELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 4559999999999999999999998877655455444332 23333 4778999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------------hCCcEEEEcc
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE------------YGCLFIECSA 159 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa 159 (210)
|+|+++++++......+...+.. ....++|+++|+||+|++. .+..+++...... ....+++|||
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSD-EELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 99999999888887744444332 2335789999999999864 2344444433311 1234899999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028329 160 KTRVNVQQCFEELVLK 175 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~ 175 (210)
+++.|++++++||.+.
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999764
No 124
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=7.1e-27 Score=167.34 Aligned_cols=152 Identities=26% Similarity=0.435 Sum_probs=112.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccE
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFE-------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+|+++|++|||||||+++|.+.... ...++.+.... .+.++ ...+.+||+||+..+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 5899999999999999999864321 11223333332 23333 5789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-------hCCcEEEEccCC
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-------YGCLFIECSAKT 161 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~ 161 (210)
+++|+|+++++++..... |+..+.......++|+++++||+|++.. ....+...+... .+++++++||++
T Consensus 77 ~v~vvd~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 77 IIYVIDSTDRERFEESKS-ALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred EEEEEECchHHHHHHHHH-HHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence 999999999988888877 4444433333457999999999998653 233334444332 245799999999
Q ss_pred CCCHHHHHHHHHH
Q 028329 162 RVNVQQCFEELVL 174 (210)
Q Consensus 162 ~~~i~~~~~~l~~ 174 (210)
|.|++++++||.+
T Consensus 154 g~gv~e~~~~l~~ 166 (167)
T cd04160 154 GTGVREGIEWLVE 166 (167)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999864
No 125
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=7.4e-26 Score=162.99 Aligned_cols=143 Identities=39% Similarity=0.633 Sum_probs=124.4
Q ss_pred CCCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhc
Q 028329 38 NFEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYS 116 (210)
Q Consensus 38 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 116 (210)
.|.+. .++.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++++|+.+.. |+..+....
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~-w~~~i~~~~ 82 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDILNER 82 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHH-HHHHHHHhc
Confidence 45444 4588888888888899999999999999999999999999999999999999999999999987 777765533
Q ss_pred cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329 117 TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 117 ~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
..++|++||+||+|+...+.+..+++..++..++..++++||++|.|++++|++|.+.+.+..+.
T Consensus 83 -~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 -GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred -CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 35789999999999977667788888888888888999999999999999999999999876655
No 126
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=1.9e-25 Score=171.43 Aligned_cols=143 Identities=29% Similarity=0.461 Sum_probs=118.9
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEEC-------------CeEEEEEEEeCCCccc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVG-------------GKKLKLAIWDTAGQER 74 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~ 74 (210)
.+....+||+++|+.|||||||+++|..+.+...+ ++.+.++....+.++ +..+.+.|||++|++.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 44556799999999999999999999998886554 488887776666654 2568899999999999
Q ss_pred cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhcc-----------CCCCcEEEEEeCCCCCCCc---e---
Q 028329 75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYST-----------NQDCIKLLVGNKVDKESER---V--- 137 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----------~~~~piivv~nK~D~~~~~---~--- 137 (210)
+..++..+++++|++|+|||+++..+++.+.. |+..+..... ..++|++||+||+|+...+ .
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~k-Wl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~ 174 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG 174 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence 99999999999999999999999999999988 8888876432 1358999999999996543 2
Q ss_pred ecHHHHHHHHHHhCC
Q 028329 138 VTKKEGINFAREYGC 152 (210)
Q Consensus 138 ~~~~~~~~~~~~~~~ 152 (210)
+..++++.++...++
T Consensus 175 ~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 175 NLVDAARQWVEKQGL 189 (334)
T ss_pred ccHHHHHHHHHHcCC
Confidence 357889999998874
No 127
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=3.1e-25 Score=159.73 Aligned_cols=158 Identities=21% Similarity=0.322 Sum_probs=117.7
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
.....++|+++|++|||||||++++.+..+....++.+.+.. .+... ...+.+||++|+..+...+..+++.+|++
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 345579999999999999999999998876655556664443 33333 36789999999988888888889999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-----CcEEEEccCCCCC
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-----CLFIECSAKTRVN 164 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~ 164 (210)
++|+|+++..++.....++...+.. ....++|+++++||.|+..... .++......... .+++++||+++.|
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~g 162 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEE-EKLAGVPVLVFANKQDLATAAP--AEEIAEALNLHDLRDRTWHIQACSAKTGEG 162 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECCCCccCCC--HHHHHHHcCCcccCCCeEEEEEeECCCCCC
Confidence 9999999988888877744444443 3345799999999999864321 222222111111 2378999999999
Q ss_pred HHHHHHHHHH
Q 028329 165 VQQCFEELVL 174 (210)
Q Consensus 165 i~~~~~~l~~ 174 (210)
++++|+||.+
T Consensus 163 i~~~~~~l~~ 172 (173)
T cd04155 163 LQEGMNWVCK 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999999865
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=6.2e-25 Score=157.40 Aligned_cols=155 Identities=17% Similarity=0.108 Sum_probs=106.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---------chhhcccCc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---------LTSSYYRGA 86 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~~~~~ 86 (210)
+|+++|++|||||||+++|++..+.. .+.++.+..............+.+|||||...... ........+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEV-APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCcc-CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 79999999999999999999877642 22222222222222333457899999999732110 011111236
Q ss_pred cEEEEEEeCCCcccH--HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCC
Q 028329 87 QGIIMVYDVTRRDTF--TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN 164 (210)
Q Consensus 87 d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 164 (210)
|++++|+|+++..++ +.... |+..+.... .+.|+++|+||+|+.....+.. ...+....+.+++++||+++.|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~-~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLS-LFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred CcEEEEEeCCcccccchHHHHH-HHHHHHhhc--CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence 899999999987653 44444 666665422 4789999999999965443332 3444454567899999999999
Q ss_pred HHHHHHHHHHHH
Q 028329 165 VQQCFEELVLKI 176 (210)
Q Consensus 165 i~~~~~~l~~~~ 176 (210)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=4e-25 Score=160.04 Aligned_cols=153 Identities=23% Similarity=0.262 Sum_probs=111.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-------CCCC-C------CceeeeEEEEEE--E---CCeEEEEEEEeCCCccccc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNF-------EELS-P------TIGVDFKVKYVD--V---GGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~-------~~~~-~------~~~~~~~~~~~~--~---~~~~~~~~l~D~~g~~~~~ 76 (210)
+|+++|++++|||||+++|++... ...+ + +.+.++...... + ++..+.+.+|||||+..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 689999999999999999986421 1111 1 123333333222 2 5678889999999999999
Q ss_pred cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC---c
Q 028329 77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC---L 153 (210)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 153 (210)
..+..++..+|++++|+|+++..++..... |.... ..++|+++|+||+|+.... .......+...+++ .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~-~~~~~-----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 153 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLAN-FYLAL-----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSE 153 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHH-HHHHH-----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCccc
Confidence 988889999999999999998877666554 43322 2468899999999986432 12222344555565 3
Q ss_pred EEEEccCCCCCHHHHHHHHHHHH
Q 028329 154 FIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 154 ~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
++++||++|.|++++|+++.+.+
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 154 AILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEEeeccCCCCHHHHHHHHHhhC
Confidence 89999999999999999998765
No 130
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.3e-25 Score=155.28 Aligned_cols=162 Identities=20% Similarity=0.313 Sum_probs=133.8
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
.....+|+++|--++||||++++|..++.....||.|..+....+ ..+.+++||.+|+..++++|..++.+.+++|
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 456799999999999999999999999988888899977765555 3788999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNV 165 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i 165 (210)
||+|.+|.+.+.+.+..+...+.. .+....|+++.+||.|++..-. ..++..... ...-.+..|+|.+|+|+
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~-~~l~~~~llv~aNKqD~~~als--~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAE-PELRNAPLLVFANKQDLPGALS--AAEITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcC-cccCCceEEEEechhhccccCC--HHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence 999999999999999877776665 3456899999999999875533 222222222 22334788999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028329 166 QQCFEELVLKILDT 179 (210)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (210)
.+.++|+...+..+
T Consensus 167 ~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 167 YEGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988653
No 131
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=4.1e-25 Score=156.40 Aligned_cols=151 Identities=25% Similarity=0.408 Sum_probs=114.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
|+++|++|||||||+++|.+..+...+. +.+..+. .+... .+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7899999999999999999988765443 5554443 23333 37899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEEccCCCCCHHHHHH
Q 028329 96 TRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----REYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
++..++......+...+.. ....++|+++|+||.|+...... .+..... ....++++++|++++.|++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 78 ADRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 9998888887744444432 33457899999999998654322 1111111 12235689999999999999999
Q ss_pred HHHH
Q 028329 171 ELVL 174 (210)
Q Consensus 171 ~l~~ 174 (210)
++.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9875
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=7.1e-25 Score=157.34 Aligned_cols=156 Identities=18% Similarity=0.217 Sum_probs=106.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEEEEECCeEEEEEEEeCCCccc----cccchhhc---ccCc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKYVDVGGKKLKLAIWDTAGQER----FRTLTSSY---YRGA 86 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~ 86 (210)
+|+++|++|||||||+++|.+... .....++.+.. ...+...+ ...+.+|||||... .......+ +..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 589999999999999999997553 11111122221 11122222 24799999999632 11222333 4469
Q ss_pred cEEEEEEeCCCc-ccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCcEEEEccCCCC
Q 028329 87 QGIIMVYDVTRR-DTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFARE-YGCLFIECSAKTRV 163 (210)
Q Consensus 87 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~ 163 (210)
|++++|+|++++ +++..+.. |.+.+..... ....|+++|+||+|+....... .....+... .+.+++++|++++.
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~ 157 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKT-IRNELELYNPELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISALTGE 157 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHH-HHHHHHHhCccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecCCCC
Confidence 999999999999 78888776 7777665432 2468999999999986544432 233444444 36789999999999
Q ss_pred CHHHHHHHHHHH
Q 028329 164 NVQQCFEELVLK 175 (210)
Q Consensus 164 ~i~~~~~~l~~~ 175 (210)
|++++|+++.+.
T Consensus 158 gi~~l~~~i~~~ 169 (170)
T cd01898 158 GLDELLRKLAEL 169 (170)
T ss_pred CHHHHHHHHHhh
Confidence 999999998865
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=1.7e-24 Score=169.71 Aligned_cols=165 Identities=17% Similarity=0.134 Sum_probs=117.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECC-eEEEEEEEeCCCccc-------cccchhhcccC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGG-KKLKLAIWDTAGQER-------FRTLTSSYYRG 85 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~-------~~~~~~~~~~~ 85 (210)
...|.++|.||||||||+++|+.... ...+.+.+|.......+.. ....+.+||+||... +...+...++.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 35789999999999999999997653 2222223333322222211 334689999999632 22233345667
Q ss_pred ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccC-CCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCC
Q 028329 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN-QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN 164 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 164 (210)
++++++|+|+++.++++.... |...+..+... .++|+++|+||+|+........+....++...+.+++++||+++.|
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~-~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~G 315 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKT-IRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEG 315 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHH-HHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence 999999999998888888877 88888765332 4689999999999975544443344445555668899999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 028329 165 VQQCFEELVLKILDTP 180 (210)
Q Consensus 165 i~~~~~~l~~~~~~~~ 180 (210)
+++++++|.+.+.+.+
T Consensus 316 I~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 316 LDELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999886533
No 134
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.93 E-value=5.8e-24 Score=143.15 Aligned_cols=168 Identities=23% Similarity=0.294 Sum_probs=141.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEE-EECCeEEEEEEEeCCCcccc-ccchhhcccCccE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVKYV-DVGGKKLKLAIWDTAGQERF-RTLTSSYYRGAQG 88 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~~~-~~~~~~~~~~~d~ 88 (210)
...||+++|..++|||+++..|..+......+ .+-.+++...+ +-.+..-.++|+||.|.... ..+-.+++.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 56899999999999999999987666533333 22233444444 33555678999999997666 5677888999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
+++||+..+++||..+.. +...|.....+.++||+|++||+|+.+++.++.+.+..|++...+..+++++.+..++-+.
T Consensus 88 fVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred EEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 999999999999999988 8888988888889999999999999989999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028329 169 FEELVLKILDTPS 181 (210)
Q Consensus 169 ~~~l~~~~~~~~~ 181 (210)
|..+...+.+.++
T Consensus 167 f~~l~~rl~~pqs 179 (198)
T KOG3883|consen 167 FTYLASRLHQPQS 179 (198)
T ss_pred HHHHHHhccCCcc
Confidence 9999998876554
No 135
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=9.7e-24 Score=149.02 Aligned_cols=157 Identities=28% Similarity=0.446 Sum_probs=121.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
+||+++|++|+|||||++++....+...+ ++.+.+.....+..++..+.+.+||+||+..+...+...+..+++++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 79999999999999999999988854433 35555665555667776688999999999999888888899999999999
Q ss_pred eCCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHH
Q 028329 94 DVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEEL 172 (210)
Q Consensus 94 d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 172 (210)
|.... .++......|...+...... +.|+++++||.|+.... ........+......+++++||+++.|+.++|++|
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 98877 67766664466666554433 78999999999996544 33333333334445679999999999999999986
Q ss_pred H
Q 028329 173 V 173 (210)
Q Consensus 173 ~ 173 (210)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 3
No 136
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=1.9e-24 Score=170.47 Aligned_cols=171 Identities=20% Similarity=0.239 Sum_probs=119.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-ccc-------hhhcc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-RTL-------TSSYY 83 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~~-------~~~~~ 83 (210)
.+.++|+++|++|||||||+++|.+..+....+.+++|.......+.....++.+|||||.... ..+ ....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 3567999999999999999999999887655554444433222222223356899999997432 221 12246
Q ss_pred cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEEccCC
Q 028329 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECSAKT 161 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~ 161 (210)
..+|++++|+|..+ ++......|+..+.. .+.|.++|+||+|+... ...+...++.... ..++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~----~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS----LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh----cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccC
Confidence 78999999999765 344444435555543 24567889999998643 2334555555443 4699999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCcccccccCcc
Q 028329 162 RVNVQQCFEELVLKILDTPSLLAEGSKGLK 191 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 191 (210)
|.|++++|++|...+.+....++.+.....
T Consensus 201 g~gv~eL~~~L~~~l~~~~~~~~~~~~td~ 230 (339)
T PRK15494 201 GKNIDGLLEYITSKAKISPWLYAEDDITDL 230 (339)
T ss_pred ccCHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 999999999999999999888877665444
No 137
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=2.3e-24 Score=165.54 Aligned_cols=166 Identities=17% Similarity=0.081 Sum_probs=116.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccCcc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYYRGAQ 87 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d 87 (210)
+|+++|.+|||||||+|+|++.+....++.+++|.............++.+|||||...... .....+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999988765555444444332222222235689999999654221 1234578899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQ 166 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 166 (210)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+...... ......+....+. +++++||++|.|++
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN----LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh----cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 999999999877664 224444433 46899999999998643222 2233344444444 69999999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccC
Q 028329 167 QCFEELVLKILDTPSLLAEGSKG 189 (210)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~~~~~~ 189 (210)
++++++.+.+......++.+...
T Consensus 154 ~L~~~l~~~l~~~~~~~~~~~~t 176 (270)
T TIGR00436 154 FLAAFIEVHLPEGPFRYPEDYVT 176 (270)
T ss_pred HHHHHHHHhCCCCCCCCCCcccC
Confidence 99999999998877766655443
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=2.3e-24 Score=150.40 Aligned_cols=134 Identities=18% Similarity=0.195 Sum_probs=98.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc-----ccccchhhcccCccEEE
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE-----RFRTLTSSYYRGAQGII 90 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~i 90 (210)
||+++|++|||||||+++|.+..+. ..++.+.+ +. -.+||+||.. .+..... .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~-------~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVE-------YN-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEE-------Ec-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999987652 22232221 11 1689999972 2333333 478999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQQCF 169 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~ 169 (210)
+|||++++.++... . |...+ ..|+++|+||+|+.+ +....+++..++...+. +++++||+++.|++++|
T Consensus 68 lv~d~~~~~s~~~~-~-~~~~~-------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 68 LVQSATDPESRFPP-G-FASIF-------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred EEecCCCCCcCCCh-h-HHHhc-------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence 99999999987653 2 43322 238999999999864 23445566777777776 79999999999999999
Q ss_pred HHHH
Q 028329 170 EELV 173 (210)
Q Consensus 170 ~~l~ 173 (210)
+++.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 9874
No 139
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=4.9e-24 Score=157.53 Aligned_cols=156 Identities=18% Similarity=0.124 Sum_probs=109.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc---------ccchhh
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF---------RTLTSS 81 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~ 81 (210)
...++|+++|++|||||||++++++..... ..+....+.....+.+.+. ..+.+||+||.... ...+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 445899999999999999999999876422 2222222222333333332 37899999997321 1111 2
Q ss_pred cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 161 (210)
.+..+|++++|+|++++.++..... |...+... ...++|+++|+||+|+....... ........+++++||++
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIET-VEKVLKEL-GAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKT 189 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHH-HHHHHHHc-CcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCC
Confidence 3568999999999999988877655 66666543 23468999999999986543322 33445567899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028329 162 RVNVQQCFEELVLKI 176 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~ 176 (210)
+.|+++++++|...+
T Consensus 190 ~~gi~~l~~~L~~~~ 204 (204)
T cd01878 190 GEGLDELLEAIEELL 204 (204)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999997653
No 140
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=4.1e-23 Score=154.15 Aligned_cols=169 Identities=40% Similarity=0.594 Sum_probs=134.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
.+||+++|++|||||||+++|..+.+...++ +.+..+...........+.+.+||++|+..++..+..++.++++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 3999999999999999999999999987776 556666666565555588999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce------------ecHHHHHHHHHHh---CCcEEEE
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV------------VTKKEGINFAREY---GCLFIEC 157 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------------~~~~~~~~~~~~~---~~~~~~~ 157 (210)
+|..+..++..+...|...+..... ...|+++++||+|+..... ............. ...++++
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 9999977777777779988876432 4699999999999965532 2222222222222 2238999
Q ss_pred ccC--CCCCHHHHHHHHHHHHHcCCCcc
Q 028329 158 SAK--TRVNVQQCFEELVLKILDTPSLL 183 (210)
Q Consensus 158 sa~--~~~~i~~~~~~l~~~~~~~~~~~ 183 (210)
|++ .+.++.++|..+...+.+.....
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIEKL 191 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence 999 99999999999999997655444
No 141
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.2e-23 Score=139.57 Aligned_cols=158 Identities=23% Similarity=0.363 Sum_probs=134.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
..++|+.+|-.++||||++..|+.+......||.|+.+..+.+ ..+.+.+||.+|++..+++|..++.+..++|+|
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 4689999999999999999999998887777888877665544 578899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-----cEEEEccCCCCCHHH
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-----LFIECSAKTRVNVQQ 167 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~sa~~~~~i~~ 167 (210)
+|..+.+..++.++.+...+.. ..-.+.|++|.+||.|++.. ...+++..+.....+ -+.++++.++.++.+
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~-~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIIND-REMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCC-HhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 9999999999999988888876 34557899999999998754 455666666554433 378899999999999
Q ss_pred HHHHHHHHHH
Q 028329 168 CFEELVLKIL 177 (210)
Q Consensus 168 ~~~~l~~~~~ 177 (210)
-|.|+.+.+.
T Consensus 169 glswlsnn~~ 178 (180)
T KOG0071|consen 169 GLSWLSNNLK 178 (180)
T ss_pred HHHHHHhhcc
Confidence 9999988763
No 142
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=4.6e-24 Score=157.31 Aligned_cols=155 Identities=21% Similarity=0.239 Sum_probs=104.1
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccch
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG-----------QERFRTLT 79 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~ 79 (210)
....++|+++|++|||||||+++|++..+. ....++.++....+... .+.+||+|| .+.++..+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 345689999999999999999999987754 33344555554444433 589999999 34455544
Q ss_pred hhcc----cCccEEEEEEeCCCcccHHH---------HHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q 028329 80 SSYY----RGAQGIIMVYDVTRRDTFTN---------LSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF 146 (210)
Q Consensus 80 ~~~~----~~~d~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~ 146 (210)
..++ ..++++++|+|.+....+.. ....+...+. ..++|+++|+||+|+.... .+....+
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~p~iiv~NK~Dl~~~~---~~~~~~~ 153 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR----ELGIPPIVAVNKMDKIKNR---DEVLDEI 153 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH----HcCCCeEEEEECccccCcH---HHHHHHH
Confidence 4444 34578888998765322210 0011222222 2468999999999986443 2234444
Q ss_pred HHHhCC---------cEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 147 AREYGC---------LFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 147 ~~~~~~---------~~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
...++. +++++||++| |++++|++|.+.+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 555554 4899999999 999999999988744
No 143
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.91 E-value=1.2e-23 Score=149.86 Aligned_cols=153 Identities=19% Similarity=0.167 Sum_probs=101.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC---CCCC-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN---FEEL-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
.|+++|++|||||||+++|++.. +... .+....+.....+.+.. ...+.+|||||+..+.......+..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 58999999999999999999643 2211 11222222223333331 4579999999998887766677889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHH---hCCcEEEEccCCCCCHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFARE---YGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~ 166 (210)
|+|+++... ..... .+..+.. ....|+++++||+|+..... ...++....... .+.+++++||+++.|++
T Consensus 81 V~d~~~~~~-~~~~~-~~~~~~~---~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 81 VVAADEGIM-PQTRE-HLEILEL---LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EEECCCCcc-HhHHH-HHHHHHH---hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHH
Confidence 999987321 11111 1122222 11248999999999965421 122333444444 35789999999999999
Q ss_pred HHHHHHHH
Q 028329 167 QCFEELVL 174 (210)
Q Consensus 167 ~~~~~l~~ 174 (210)
++|+.+..
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99998754
No 144
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=4.4e-23 Score=144.42 Aligned_cols=154 Identities=50% Similarity=0.791 Sum_probs=120.1
Q ss_pred EEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCC
Q 028329 19 MIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR 97 (210)
Q Consensus 19 v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 97 (210)
++|++|+|||||++++++... .....+...+..............+.+||+||...+...+...+..+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998876 3333333366677777777778999999999988888888888899999999999999
Q ss_pred cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHH-HHHHHHHhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 98 RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKE-GINFAREYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 98 ~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
+.++..... |............+|+++++||.|+.......... ..........+++++|++++.|+.+++++|.
T Consensus 81 ~~~~~~~~~-~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 81 RESFENVKE-WLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHH-HHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 998888877 42222223446679999999999986554443332 3344445567899999999999999999975
No 145
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=4.2e-23 Score=145.98 Aligned_cols=147 Identities=23% Similarity=0.200 Sum_probs=105.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhcccCc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSYYRGA 86 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~~ 86 (210)
++|+++|++|+|||||++++++.......+.++++.......+......+.+||+||...+... ....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 5899999999999999999998775433333333322222222223457899999996554321 23456789
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 166 (210)
|++++|+|++++.+...... +.. ....|+++|+||+|+...... .....+.+++++||+++.|++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~-~~~-------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEI-LEL-------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred CEEEEEEECCCCCCHHHHHH-HHh-------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 99999999998877766544 222 346899999999998654433 234456789999999999999
Q ss_pred HHHHHHHHHH
Q 028329 167 QCFEELVLKI 176 (210)
Q Consensus 167 ~~~~~l~~~~ 176 (210)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=1.2e-22 Score=145.44 Aligned_cols=156 Identities=18% Similarity=0.123 Sum_probs=106.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
.|+++|++|+|||||+++|....+..... ....+.....+... +....+.+|||||+..+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887654422 22222222333332 23567899999999888888888889999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH-HHHHHHHH------HhCCcEEEEccCCCCCHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK-KEGINFAR------EYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~sa~~~~~i~ 166 (210)
|+++........ ....+. ..++|+++|+||+|+........ .....+.. ...++++++|++++.|++
T Consensus 82 d~~~~~~~~~~~--~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQTIE--AIKLAK----AANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHHHH--HHHHHH----HcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 999854322221 122222 24689999999999864321111 11111111 113579999999999999
Q ss_pred HHHHHHHHHHH
Q 028329 167 QCFEELVLKIL 177 (210)
Q Consensus 167 ~~~~~l~~~~~ 177 (210)
+++++|.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999987653
No 147
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=7.2e-24 Score=147.78 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=100.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhcc--cCc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYY--RGA 86 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~~~ 86 (210)
|+|+++|.||||||||+|+|++.. ......+|.|.......+......+.++|+||.-...+ ....++ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 689999999999999999999887 33344566666555443332336788889999433222 222333 579
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 166 (210)
|+++.|+|+++.+ .... +...+. ..++|+++++||+|....+.+.. +...+.+.++++++.+||+++.|++
T Consensus 80 D~ii~VvDa~~l~---r~l~-l~~ql~----e~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 80 DLIIVVVDATNLE---RNLY-LTLQLL----ELGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGID 150 (156)
T ss_dssp SEEEEEEEGGGHH---HHHH-HHHHHH----HTTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred CEEEEECCCCCHH---HHHH-HHHHHH----HcCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHH
Confidence 9999999998743 3332 223332 24699999999999865544433 3566777889999999999999999
Q ss_pred HHHHHH
Q 028329 167 QCFEEL 172 (210)
Q Consensus 167 ~~~~~l 172 (210)
++++.|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 998865
No 148
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=4.6e-23 Score=139.52 Aligned_cols=114 Identities=33% Similarity=0.620 Sum_probs=90.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFE---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
||+|+|++|||||||+++|++..+. ...+..+.++.............+.+||++|.+.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988876 2223455555555667777877899999999998888888889999999999
Q ss_pred EeCCCcccHHHHHHH--HHHHHhhhccCCCCcEEEEEeCCC
Q 028329 93 YDVTRRDTFTNLSDV--WAKEIDLYSTNQDCIKLLVGNKVD 131 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~~~piivv~nK~D 131 (210)
||++++.+++.+..+ |+..+.. ...++|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~--~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRK--RDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHH--HSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeccC
Confidence 999999999998663 4444443 245699999999998
No 149
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=1e-22 Score=144.26 Aligned_cols=147 Identities=16% Similarity=0.202 Sum_probs=105.5
Q ss_pred EEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhccc--CccEE
Q 028329 19 MIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LTSSYYR--GAQGI 89 (210)
Q Consensus 19 v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~--~~d~~ 89 (210)
++|.+|+|||||++++++.... ..++..+.+.....+.+++ ..+.+|||||...+.. .+..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5899999999999999987632 2233333334444455554 5789999999876554 2444554 89999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
++|+|+++.++.. . |...+.. .++|+++++||+|+.....+... ...+...++.+++++|++++.|+++++
T Consensus 79 i~v~d~~~~~~~~---~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 79 VNVVDATNLERNL---Y-LTLQLLE----LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EEEeeCCcchhHH---H-HHHHHHH----cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHH
Confidence 9999998865432 2 3333322 36899999999999655444333 356666778999999999999999999
Q ss_pred HHHHHHH
Q 028329 170 EELVLKI 176 (210)
Q Consensus 170 ~~l~~~~ 176 (210)
.++.+.+
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9998764
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=3.6e-23 Score=149.17 Aligned_cols=155 Identities=23% Similarity=0.257 Sum_probs=103.7
Q ss_pred EEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc----cccc---hhhcccCccEEE
Q 028329 19 MIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER----FRTL---TSSYYRGAQGII 90 (210)
Q Consensus 19 v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~---~~~~~~~~d~~i 90 (210)
++|++|||||||+++|.+.... ..++....+.....+.+. ....+.+||+||... .... ....+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 5899999999999999987641 122211111222223333 145689999999632 1222 233467899999
Q ss_pred EEEeCCCc------ccHHHHHHHHHHHHhhhccC------CCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEc
Q 028329 91 MVYDVTRR------DTFTNLSDVWAKEIDLYSTN------QDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECS 158 (210)
Q Consensus 91 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~------~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (210)
+|+|+.+. .++..... |...+...... .+.|+++|+||+|+..................+..++++|
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 99999988 46666655 55555543221 4689999999999965544333322333444567799999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 028329 159 AKTRVNVQQCFEELVLK 175 (210)
Q Consensus 159 a~~~~~i~~~~~~l~~~ 175 (210)
++++.|++++++++.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999998764
No 151
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=1.5e-22 Score=158.65 Aligned_cols=160 Identities=17% Similarity=0.133 Sum_probs=110.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-------ccchhhcccC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-------RTLTSSYYRG 85 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~ 85 (210)
...|+++|.||||||||+++|+..... ..++.+......-.+.+++ ...+.+||+||.... ...+...+..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 467999999999999999999976532 2223111222222233332 367899999996421 1222334567
Q ss_pred ccEEEEEEeCCCc---ccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329 86 AQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 86 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 161 (210)
+|++++|+|+++. ++++.+.. |...+..+.. ..+.|++||+||+|+..... ..+....+....+.+++++||++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~-l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAkt 313 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEI-IRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALT 313 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHH-HHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccC
Confidence 9999999999986 56667665 7776665432 24689999999999965533 22334445555678899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028329 162 RVNVQQCFEELVLKI 176 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~ 176 (210)
+.|+++++++|.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998765
No 152
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=2.1e-22 Score=163.33 Aligned_cols=152 Identities=24% Similarity=0.229 Sum_probs=111.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSS 81 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~ 81 (210)
...++|+++|++|||||||+|+|++.......+.++++. ....+.+++ ..+.+|||||...+... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 356899999999999999999999876543344344433 344445554 55789999997654432 234
Q ss_pred cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 161 (210)
.++.+|++++|+|++++.+++.. |+..+. ..++|+++|+||+|+... ....+....+.+++.+|+++
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~---~l~~~~----~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF---LIIDLN----KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ 345 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH---HHHHHh----hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec
Confidence 67889999999999998877654 444332 246899999999998643 12334556677899999998
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 028329 162 RVNVQQCFEELVLKILDT 179 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~ 179 (210)
.|++++|+.+.+.+.+.
T Consensus 346 -~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 346 -LKIKALVDLLTQKINAF 362 (442)
T ss_pred -CCHHHHHHHHHHHHHHH
Confidence 69999999999988654
No 153
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.90 E-value=1e-22 Score=149.29 Aligned_cols=158 Identities=20% Similarity=0.221 Sum_probs=109.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc--CCCCCCC-------------CCceeeeEEEEEEECCeEEEEEEEeCCCccccccch
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS--DNFEELS-------------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT 79 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 79 (210)
-+|+++|++++|||||+++|+. +.+...+ .+.+.++......+......+.+||+||+..+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999996 4443322 134455555555555567889999999999999999
Q ss_pred hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHH-------hC
Q 028329 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFARE-------YG 151 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~ 151 (210)
..+++++|++++|+|+++.. +..... ++..+. ..++|+++|+||+|+...+. ...++...+... .+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~-~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRF-VLKKAL----ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLD 156 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHH-HHHHHH----HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCc
Confidence 99999999999999998742 222222 333332 24689999999999964332 123344444422 36
Q ss_pred CcEEEEccCCCCCHHHH------HHHHHHHHHc
Q 028329 152 CLFIECSAKTRVNVQQC------FEELVLKILD 178 (210)
Q Consensus 152 ~~~~~~sa~~~~~i~~~------~~~l~~~~~~ 178 (210)
++++++||++|.|+.++ +++|++.+..
T Consensus 157 ~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~ 189 (194)
T cd01891 157 FPVLYASAKNGWASLNLEDPSEDLEPLFDTIIE 189 (194)
T ss_pred cCEEEeehhccccccccccchhhHHHHHHHHHh
Confidence 78999999999877433 4555555543
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.3e-22 Score=166.80 Aligned_cols=155 Identities=21% Similarity=0.196 Sum_probs=110.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhccc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--------FRTLTSSYYR 84 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~ 84 (210)
...+|+++|.+|||||||+++|++.......++++.+..............+.+|||||... +...+..++.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 34799999999999999999999877655555566555444333322334588999999652 2334455688
Q ss_pred CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCC
Q 028329 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRV 163 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 163 (210)
.+|++|+|+|+++..++.. ..+...+.. .++|+++|+||+|+.... .+....+ ..++ .++++||++|.
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~----~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLRR----SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR 185 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH----cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence 9999999999998866543 224454443 468999999999986432 1111222 3344 36799999999
Q ss_pred CHHHHHHHHHHHHHc
Q 028329 164 NVQQCFEELVLKILD 178 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~ 178 (210)
|++++|+++...+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999998865
No 155
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=1.2e-22 Score=143.74 Aligned_cols=145 Identities=23% Similarity=0.153 Sum_probs=99.7
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCCCCCceee--eEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccCcc
Q 028329 18 LMIGDSGVGKSSLLLSFTSDNFEELSPTIGVD--FKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYYRGAQ 87 (210)
Q Consensus 18 ~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d 87 (210)
+++|.+|+|||||+++|++.........++++ ......... ...+.+||+||...+.. .+...+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47899999999999999977532222222222 222233333 36789999999877543 3345678899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQ 166 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 166 (210)
++++|+|+.+..+.... . +...+.. .+.|+++|+||+|+...... .......+. +++++|++++.|++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~-~~~~~~~----~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~ 147 (157)
T cd01894 79 VILFVVDGREGLTPADE-E-IAKYLRK----SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIG 147 (157)
T ss_pred EEEEEEeccccCCccHH-H-HHHHHHh----cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHH
Confidence 99999999876544332 1 3333332 35899999999998654322 222334565 68999999999999
Q ss_pred HHHHHHHHH
Q 028329 167 QCFEELVLK 175 (210)
Q Consensus 167 ~~~~~l~~~ 175 (210)
++|+++.+.
T Consensus 148 ~l~~~l~~~ 156 (157)
T cd01894 148 DLLDAILEL 156 (157)
T ss_pred HHHHHHHhh
Confidence 999999875
No 156
>PRK00089 era GTPase Era; Reviewed
Probab=99.89 E-value=3.1e-22 Score=155.62 Aligned_cols=168 Identities=16% Similarity=0.139 Sum_probs=115.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc--------cchhhccc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR--------TLTSSYYR 84 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~ 84 (210)
+.-.|+++|++|||||||+|+|++.......+.+.++..............+.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4467999999999999999999998876555544433333322222234789999999964432 22334567
Q ss_pred CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEEccCCCC
Q 028329 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG-CLFIECSAKTRV 163 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~ 163 (210)
.+|++++|+|+++..+ .....+...+. ..+.|+++|+||+|+.............+....+ .+++++||+++.
T Consensus 84 ~~D~il~vvd~~~~~~--~~~~~i~~~l~----~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 84 DVDLVLFVVDADEKIG--PGDEFILEKLK----KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred cCCEEEEEEeCCCCCC--hhHHHHHHHHh----hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 8999999999998322 22222333333 2368999999999996433333333444444444 469999999999
Q ss_pred CHHHHHHHHHHHHHcCCCccccc
Q 028329 164 NVQQCFEELVLKILDTPSLLAEG 186 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~~~~~~~ 186 (210)
|++++++++.+.+......++.+
T Consensus 158 gv~~L~~~L~~~l~~~~~~y~~~ 180 (292)
T PRK00089 158 NVDELLDVIAKYLPEGPPYYPED 180 (292)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999998777666554
No 157
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=1.2e-22 Score=137.15 Aligned_cols=173 Identities=25% Similarity=0.509 Sum_probs=147.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
--.+||.++|++..|||||+-.+.++.+.+.+. +.|..+....+.+.+.++.+.+||++|++++....+.....+-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 346999999999999999999999988866555 8999999999999999999999999999999999888889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC----CCC-ceecHHHHHHHHHHhCCcEEEEccCCCCCH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK----ESE-RVVTKKEGINFAREYGCLFIECSAKTRVNV 165 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~----~~~-~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 165 (210)
++||++.+.++..+.. |...-+. .++.-+| |+||+|.|+ +.+ ......+++.+++-.+++.++||+..+.|+
T Consensus 98 FmFDLt~r~TLnSi~~-WY~QAr~-~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv 174 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKE-WYRQARG-LNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV 174 (205)
T ss_pred EEEecCchHHHHHHHH-HHHHHhc-cCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence 9999999999999999 7776654 4566688 889999986 222 122334578888889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcccccc
Q 028329 166 QQCFEELVLKILDTPSLLAEGS 187 (210)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~~~~ 187 (210)
..+|.-++.+++.-....++..
T Consensus 175 ~KIFK~vlAklFnL~~ti~~~~ 196 (205)
T KOG1673|consen 175 QKIFKIVLAKLFNLPWTIPEIL 196 (205)
T ss_pred HHHHHHHHHHHhCCceeccccc
Confidence 9999999999998887766544
No 158
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=6.7e-22 Score=161.51 Aligned_cols=164 Identities=23% Similarity=0.140 Sum_probs=111.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccch-----------h
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT-----------S 80 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----------~ 80 (210)
...++|+++|.+|+|||||+++|++.......+.++++.......+......+.+|||||........ .
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 45699999999999999999999987754444444444443333222223468999999965433221 2
Q ss_pred hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-H----hCCcEE
Q 028329 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-E----YGCLFI 155 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~ 155 (210)
..++.+|++++|+|++++.+..... +...+. ..++|+++|+||+|+... ....++...... . ..++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLR--IAGLIL----EAGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHH--HHHHHH----HcCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceE
Confidence 3578899999999999887765543 333332 246899999999998621 111122222221 1 246899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329 156 ECSAKTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 156 ~~sa~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
++||++|.|++++|+++.+.+......
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~~~~ 349 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENANRR 349 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999877655443
No 159
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=1.8e-22 Score=166.09 Aligned_cols=163 Identities=19% Similarity=0.144 Sum_probs=112.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEEEEECCeEEEEEEEeCCCcc----------ccccch
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKYVDVGGKKLKLAIWDTAGQE----------RFRTLT 79 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~ 79 (210)
...++|+++|.+|||||||+++|++.......+.++++.. ...+.+++. .+.+|||||.. .+....
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence 3569999999999999999999998876444443444333 334455554 46799999952 222221
Q ss_pred -hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHH-HhCCcEE
Q 028329 80 -SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAR-EYGCLFI 155 (210)
Q Consensus 80 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~-~~~~~~~ 155 (210)
...++.+|++++|+|+++..++.... +...+. ..++|+++|+||+|+...... ...+...... ...++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~----~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 360 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR--VLSMVI----EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRV 360 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEE
Confidence 23568899999999999988877664 333332 246899999999999643211 1112221111 2246799
Q ss_pred EEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329 156 ECSAKTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 156 ~~sa~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
++||++|.|++++|..+.+.+.+....
T Consensus 361 ~~SAk~g~gv~~lf~~i~~~~~~~~~~ 387 (472)
T PRK03003 361 NISAKTGRAVDKLVPALETALESWDTR 387 (472)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999888655544
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=2e-22 Score=164.32 Aligned_cols=148 Identities=23% Similarity=0.215 Sum_probs=108.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccccccc--------hhhc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSY 82 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~ 82 (210)
..++|+++|.+|+|||||+|+|++.......+.++++. ....+.+++ ..+.+|||||...+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 35899999999999999999999877543333333333 333444544 56899999997654332 2235
Q ss_pred ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCC
Q 028329 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR 162 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 162 (210)
+..+|++++|+|++++.+++.... |.. ..+.|+++|+||+|+....... ...+.+++++||+++
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~-l~~-------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg 355 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEI-LEE-------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTG 355 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHH-HHh-------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCC
Confidence 788999999999999887765433 332 3468999999999996443221 234567999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 028329 163 VNVQQCFEELVLKILD 178 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~ 178 (210)
.|+++++++|.+.+..
T Consensus 356 ~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 356 EGIDELREAIKELAFG 371 (449)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998854
No 161
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.89 E-value=3.4e-22 Score=157.89 Aligned_cols=153 Identities=22% Similarity=0.189 Sum_probs=106.2
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccchhhc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE---------RFRTLTSSY 82 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~ 82 (210)
..++|+++|.+|||||||+|+|++.... ...+....+.....+.+.+ ...+.+|||+|.. .+...+ ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 4589999999999999999999987642 1222222233344445532 2478999999972 122222 24
Q ss_pred ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCC
Q 028329 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR 162 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 162 (210)
+.++|++++|+|++++.+++.... |...+... ...+.|+++|+||+|+.....+ ... .....+++++||+++
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l-~~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg 337 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEA-VEKVLEEL-GAEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTG 337 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHH-HHHHHHHh-ccCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCC
Confidence 678999999999999988777655 66655542 2346899999999998643211 111 112246899999999
Q ss_pred CCHHHHHHHHHHH
Q 028329 163 VNVQQCFEELVLK 175 (210)
Q Consensus 163 ~~i~~~~~~l~~~ 175 (210)
.|+++++++|.+.
T Consensus 338 ~GI~eL~~~I~~~ 350 (351)
T TIGR03156 338 EGLDLLLEAIAER 350 (351)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
No 162
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2.2e-21 Score=155.78 Aligned_cols=162 Identities=19% Similarity=0.187 Sum_probs=112.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCccc----cccch---hhcccCc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQER----FRTLT---SSYYRGA 86 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~----~~~~~---~~~~~~~ 86 (210)
..|+++|.||||||||+++|++.... ....+.+|.......+... ...+.+||+||... ...+. ...+..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 48999999999999999999976532 1222222332222222112 45689999999532 11222 2335679
Q ss_pred cEEEEEEeCCCc---ccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCC
Q 028329 87 QGIIMVYDVTRR---DTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTR 162 (210)
Q Consensus 87 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 162 (210)
+++++|+|+++. ++++.... |...+..+.. ..++|++||+||+|+... .+....+....+.+++++||+++
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~-i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tg 312 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEK-INKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTG 312 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHH-HHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCC
Confidence 999999999865 56666655 7777766533 246899999999998432 23344555556678999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCc
Q 028329 163 VNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~~~~~ 182 (210)
.|+++++++|.+.+.+.+..
T Consensus 313 eGI~eL~~~L~~~l~~~~~~ 332 (424)
T PRK12297 313 QGLDELLYAVAELLEETPEF 332 (424)
T ss_pred CCHHHHHHHHHHHHHhCccc
Confidence 99999999999988776543
No 163
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.88 E-value=1.3e-22 Score=134.95 Aligned_cols=159 Identities=24% Similarity=0.336 Sum_probs=125.4
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
..+.+||+++|-.++|||||++.|.+.+.....|+.|+....+.+ + .++.+.+||.+|+...++.|..++.+.|++|
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~--~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEY--D-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEee--c-CcEEEEEEecCCccccchhhhhhhhccceEE
Confidence 367899999999999999999999998887777888866554443 3 4689999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHH-----HHHhCCcEEEEccCCCCCH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINF-----AREYGCLFIECSAKTRVNV 165 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~~~~i 165 (210)
||+|.+|...|++.-+.+.+.+.. .....+|+++.+||.|+...... +++..- .+.....+.+||+..++|+
T Consensus 91 yVIDS~D~krfeE~~~el~ELlee-eKl~~vpvlIfankQdlltaa~~--eeia~klnl~~lrdRswhIq~csals~eg~ 167 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEE-EKLAEVPVLIFANKQDLLTAAKV--EEIALKLNLAGLRDRSWHIQECSALSLEGS 167 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhh-hhhhccceeehhhhhHHHhhcch--HHHHHhcchhhhhhceEEeeeCccccccCc
Confidence 999999999999887756666554 45668999999999998533221 111111 1112345789999999999
Q ss_pred HHHHHHHHHH
Q 028329 166 QQCFEELVLK 175 (210)
Q Consensus 166 ~~~~~~l~~~ 175 (210)
.+-.+|+...
T Consensus 168 ~dg~~wv~sn 177 (185)
T KOG0074|consen 168 TDGSDWVQSN 177 (185)
T ss_pred cCcchhhhcC
Confidence 9999987643
No 164
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.88 E-value=1.6e-21 Score=138.95 Aligned_cols=156 Identities=17% Similarity=0.098 Sum_probs=104.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhcccC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT--------LTSSYYRG 85 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~ 85 (210)
..+|+++|++|+|||||++++++.......+....+..............+.+||+||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999876544333222222222223333457789999999654332 22345778
Q ss_pred ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEEccCCCCC
Q 028329 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVN 164 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~ 164 (210)
+|++++|+|++++.+ .....+...+.. .+.|+++|+||+|+........+....+.... ..+++.+|++++.+
T Consensus 83 ~d~i~~v~d~~~~~~--~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 83 VDLVLFVVDASEPIG--EGDEFILELLKK----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred CCEEEEEEECCCccC--chHHHHHHHHHH----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 999999999998722 222223343433 26899999999998643322233333333333 35799999999999
Q ss_pred HHHHHHHHHHH
Q 028329 165 VQQCFEELVLK 175 (210)
Q Consensus 165 i~~~~~~l~~~ 175 (210)
+++++++|.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999998764
No 165
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=5.8e-22 Score=148.59 Aligned_cols=173 Identities=19% Similarity=0.119 Sum_probs=126.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc--------ccchhhccc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF--------RTLTSSYYR 84 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~ 84 (210)
+.--|+++|.||||||||+|+|.+.+.+..++-+.+|......-+.....++.++||||.... .......+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 456799999999999999999999999888886666666666555555889999999994433 233445578
Q ss_pred CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCC
Q 028329 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRV 163 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 163 (210)
.+|++++|+|+++...- -.+...+.++. .+.|+++++||+|..............+.....+ .++++||+++.
T Consensus 85 dvDlilfvvd~~~~~~~--~d~~il~~lk~----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 85 DVDLILFVVDADEGWGP--GDEFILEQLKK----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred cCcEEEEEEeccccCCc--cHHHHHHHHhh----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence 89999999999985432 11213333332 4679999999999865554222222333333333 59999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcccccccCcc
Q 028329 164 NVQQCFEELVLKILDTPSLLAEGSKGLK 191 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 191 (210)
|++.+.+.+...+.+....++.+.-...
T Consensus 159 n~~~L~~~i~~~Lpeg~~~yp~d~itD~ 186 (298)
T COG1159 159 NVDTLLEIIKEYLPEGPWYYPEDQITDR 186 (298)
T ss_pred CHHHHHHHHHHhCCCCCCcCChhhccCC
Confidence 9999999999999999988877654433
No 166
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=2.4e-21 Score=139.04 Aligned_cols=154 Identities=25% Similarity=0.186 Sum_probs=101.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE--EEEEECCeEEEEEEEeCCCcccccc-----------chh
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKV--KYVDVGGKKLKLAIWDTAGQERFRT-----------LTS 80 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~~ 80 (210)
.++|+++|++|+|||||+++|.+.........++++... ..+..++ ..+.+||+||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999999987643333322222222 2233343 3478999999643311 112
Q ss_pred hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-HHh----CCcEE
Q 028329 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-REY----GCLFI 155 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~~~ 155 (210)
..+..+|++++|+|++++.+..... +...+. ..+.|+++++||+|+............... ... ..+++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR--IAGLIL----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIV 153 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH--HHHHHH----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceE
Confidence 3457899999999999987755432 222222 235899999999998655322222222222 222 36799
Q ss_pred EEccCCCCCHHHHHHHHHHH
Q 028329 156 ECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 156 ~~sa~~~~~i~~~~~~l~~~ 175 (210)
++||+++.|+++++.++.+.
T Consensus 154 ~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 154 FISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEeccCCCCHHHHHHHHHHh
Confidence 99999999999999998764
No 167
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=1.3e-21 Score=142.50 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=109.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCC---------------ceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPT---------------IGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS 80 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (210)
+|+++|.+|+|||||+++|++......... .+.+.......+......+.+||+||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 589999999999999999998766543321 11222222222333356799999999988888888
Q ss_pred hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHH---------
Q 028329 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFARE--------- 149 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~--------- 149 (210)
..+..+|++++|+|+++..+.... . ++..+. ..+.|+++++||+|+..+... ..+.+......
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~-~-~~~~~~----~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR-E-HLRIAR----EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH-H-HHHHHH----HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 889999999999999886644322 2 333333 257899999999998653221 12233333332
Q ss_pred -----hCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 150 -----YGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 150 -----~~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
...+++++||+++.|++++++++.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 246799999999999999999999876
No 168
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.88 E-value=4e-22 Score=133.41 Aligned_cols=157 Identities=24% Similarity=0.396 Sum_probs=124.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
....+.++|..++|||||++.+..+.+.+ ..|+.|...+ .+....+.+.+||.||+..+++.|..+++++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 45789999999999999999999877754 3457776554 334456789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEEccCCCCCHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR-----EYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 166 (210)
|+|+.+++.++..+..+...+.. ..-..+|++|.|||.|++.. ....+...... ...+-.|-+|+++..|++
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k-~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid 171 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDK-PSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNID 171 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcc-hhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHH
Confidence 99999999999988877776655 44567999999999998644 23222222111 122348999999999999
Q ss_pred HHHHHHHHHH
Q 028329 167 QCFEELVLKI 176 (210)
Q Consensus 167 ~~~~~l~~~~ 176 (210)
-+.+|+.+..
T Consensus 172 ~~~~Wli~hs 181 (186)
T KOG0075|consen 172 ITLDWLIEHS 181 (186)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 169
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1.5e-21 Score=158.64 Aligned_cols=167 Identities=16% Similarity=0.121 Sum_probs=111.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYRG 85 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~ 85 (210)
....|+|+|.||||||||+++|++.... ....+++|.......+......+.+||+||..... ......+..
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 4578999999999999999999976532 22233333333333333334679999999953211 112234678
Q ss_pred ccEEEEEEeCCCc----ccHHHHHHHHHHHHhhhc----------cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC
Q 028329 86 AQGIIMVYDVTRR----DTFTNLSDVWAKEIDLYS----------TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG 151 (210)
Q Consensus 86 ~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~----------~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~ 151 (210)
+|++|+|+|+++. +.+..... +...+..+. ...+.|++||+||+|++...... +.........+
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~-i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g 314 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDA-LEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARG 314 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHH-HHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcC
Confidence 9999999999853 34444433 444554443 23468999999999996443322 22233344557
Q ss_pred CcEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329 152 CLFIECSAKTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 152 ~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
++++++||+++.|+++++.+|.+.+...+..
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~ 345 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEARAA 345 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence 8899999999999999999999988776543
No 170
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=1.4e-21 Score=138.49 Aligned_cols=140 Identities=17% Similarity=0.142 Sum_probs=98.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccch----hhcccCccEEEE
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT----SSYYRGAQGIIM 91 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----~~~~~~~d~~i~ 91 (210)
+|+++|++|+|||||+++|.+.. .....+.+. .+... .+||+||.......+ ...+..+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccCccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999988643 221122222 22222 269999963222222 233678999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--cEEEEccCCCCCHHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC--LFIECSAKTRVNVQQCF 169 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~sa~~~~~i~~~~ 169 (210)
|+|+++.+++... |...+ ..+.|+++++||+|+... ..+....++...++ +++++||+++.|++++|
T Consensus 71 v~d~~~~~s~~~~---~~~~~-----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 71 VHGANDPESRLPA---GLLDI-----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred EEeCCCcccccCH---HHHhc-----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 9999988776332 33322 135789999999998542 34456677777775 89999999999999999
Q ss_pred HHHHHHHHc
Q 028329 170 EELVLKILD 178 (210)
Q Consensus 170 ~~l~~~~~~ 178 (210)
+++.+.+.+
T Consensus 140 ~~l~~~~~~ 148 (158)
T PRK15467 140 DYLASLTKQ 148 (158)
T ss_pred HHHHHhchh
Confidence 999887644
No 171
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=4.9e-21 Score=160.50 Aligned_cols=158 Identities=21% Similarity=0.261 Sum_probs=116.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCC-------CCCCC-------CCceeeeEEEEEEE-----CCeEEEEEEEeCCCccc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDN-------FEELS-------PTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQER 74 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~-------~~~~~-------~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~ 74 (210)
.-+|+++|++++|||||+++|+... +...+ ...+.++....+.+ ++..+.+.||||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3589999999999999999998642 11111 12355555433332 46678999999999999
Q ss_pred cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--
Q 028329 75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-- 152 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 152 (210)
+...+..++..+|++++|+|+++..+...... |...+. .++|+++|+||+|+.... .......+...++.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~~-----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~ 154 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLALE-----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDA 154 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHHH-----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCc
Confidence 99999999999999999999999877766655 444332 357999999999986432 11222344444555
Q ss_pred -cEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329 153 -LFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 153 -~~~~~sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
.++++||++|.|++++|++|.+.+...
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 389999999999999999999887543
No 172
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.87 E-value=2.6e-21 Score=141.68 Aligned_cols=159 Identities=18% Similarity=0.133 Sum_probs=102.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC----CCCCC----C--CCceeeeEEEEEE----------ECCeEEEEEEEeCCCccc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD----NFEEL----S--PTIGVDFKVKYVD----------VGGKKLKLAIWDTAGQER 74 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~----~~~~~----~--~~~~~~~~~~~~~----------~~~~~~~~~l~D~~g~~~ 74 (210)
++|+++|++++|||||+++|+.. .+... . .+.........+. ..+....+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999963 11111 1 1222222222222 123367899999999866
Q ss_pred cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHH----
Q 028329 75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAR---- 148 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~---- 148 (210)
+..........+|++++|+|+++......... +. .... .+.|+++++||+|+..... ...++......
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~ 154 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGEI----LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLE 154 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHHH----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 54444344567899999999988654433322 21 1111 2579999999999863322 11222222211
Q ss_pred ---HhCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329 149 ---EYGCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 149 ---~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
..+++++++||+++.|++++++++.+++.-.
T Consensus 155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred hcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1356799999999999999999999887543
No 173
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2e-22 Score=134.43 Aligned_cols=163 Identities=22% Similarity=0.326 Sum_probs=127.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
++..+|+++|--|+||||++.++.-+......|+++.......+ ...++.+||++|+..+++.|+.++.+.|++||
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 47789999999999999999999988877777888866654433 67889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce---ecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV---VTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
|+|.+|.+........+...+.. ..-.+..++|++||+|.+.... +.........++.-+.++.+||.+|+|++..
T Consensus 92 VVDssd~dris~a~~el~~mL~E-~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQE-EELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhcc-HhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence 99999998877777656666554 2334577889999999753211 1111112222333467999999999999999
Q ss_pred HHHHHHHHHcC
Q 028329 169 FEELVLKILDT 179 (210)
Q Consensus 169 ~~~l~~~~~~~ 179 (210)
++|+.+.+..+
T Consensus 171 ~DWL~~~l~~~ 181 (182)
T KOG0072|consen 171 MDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHhcc
Confidence 99999988654
No 174
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=5e-21 Score=141.20 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=101.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEE--EEEEC---------------------------C----
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFE--ELSPTIGVDFKVK--YVDVG---------------------------G---- 59 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~--~~~~~~~~~~~~~--~~~~~---------------------------~---- 59 (210)
++|+++|+.|+|||||+..|.+.... ......+.++... ..... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47999999999999999999755211 1111111111111 00000 1
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-
Q 028329 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV- 138 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~- 138 (210)
....+.|||+||+..+...+...+..+|++++|+|++++........ .+..+.. ....|+++++||+|+......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-~l~~~~~---~~~~~iiivvNK~Dl~~~~~~~ 156 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSE-HLAALEI---MGLKHIIIVQNKIDLVKEEQAL 156 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHH-HHHHHHH---cCCCcEEEEEEchhccCHHHHH
Confidence 12678999999998888887788888999999999997421111112 1122221 122478999999998643221
Q ss_pred -cHHHHHHHHHHh---CCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 139 -TKKEGINFAREY---GCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 139 -~~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
..++...++... +++++++||+++.|++++|+++.+.+.+
T Consensus 157 ~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 157 ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 122333333332 5679999999999999999999887644
No 175
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=5.9e-21 Score=152.55 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=116.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCccccc-------cchhhcccCc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQERFR-------TLTSSYYRGA 86 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~-------~~~~~~~~~~ 86 (210)
..|.|+|.||||||||+|+|++... ...+.+.+|.......+... ...+.++|+||...-. ......+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 4799999999999999999997653 33333444443333322222 3458999999964321 1122347789
Q ss_pred cEEEEEEeCC---CcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEEccC
Q 028329 87 QGIIMVYDVT---RRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--CLFIECSAK 160 (210)
Q Consensus 87 d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~ 160 (210)
|++++|+|++ +.+.++.... |...+..+.. ..+.|++||+||+|+.....+ .+....+....+ .+++.+||+
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~-l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARI-IINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CEEEEEeccCcccccChHHHHHH-HHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence 9999999988 4455666555 6666665421 236899999999998644322 223334444444 468999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCccccccc
Q 028329 161 TRVNVQQCFEELVLKILDTPSLLAEGSK 188 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 188 (210)
++.++++++++|.+.+.+....++.+..
T Consensus 317 tg~GIdeLl~~I~~~L~~~~~~~~~~~~ 344 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEENPREEAEEAE 344 (390)
T ss_pred CCcCHHHHHHHHHHHhhhCcccCCcccc
Confidence 9999999999999999887666555444
No 176
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=4.9e-21 Score=156.44 Aligned_cols=153 Identities=24% Similarity=0.208 Sum_probs=108.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc--------cccccchhhcccCcc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ--------ERFRTLTSSYYRGAQ 87 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~~~~~~d 87 (210)
+|+++|.+|||||||+++|++.......+.++.+..............+.+|||||. ..+.......+..+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 589999999999999999998775444444554443333332223346999999995 333445556788999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCCHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVNVQ 166 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 166 (210)
++++|+|+.+..+.... .+...++. .++|+++|+||+|+....... ..+..+++ +++++||+++.|+.
T Consensus 81 ~vl~vvD~~~~~~~~d~--~i~~~l~~----~~~piilVvNK~D~~~~~~~~-----~~~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 81 VILFVVDGREGLTPEDE--EIAKWLRK----SGKPVILVANKIDGKKEDAVA-----AEFYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred EEEEEEeCCCCCCHHHH--HHHHHHHH----hCCCEEEEEECccCCcccccH-----HHHHhcCCCCeEEEeCCcCCChH
Confidence 99999999876443322 13344443 368999999999986543221 12345676 69999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028329 167 QCFEELVLKILDT 179 (210)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (210)
++++++.+.+.+.
T Consensus 150 ~ll~~i~~~l~~~ 162 (429)
T TIGR03594 150 DLLDAILELLPEE 162 (429)
T ss_pred HHHHHHHHhcCcc
Confidence 9999999887543
No 177
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=1.1e-20 Score=139.18 Aligned_cols=119 Identities=18% Similarity=0.314 Sum_probs=89.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc-cEEEEEEe
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA-QGIIMVYD 94 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-d~~i~v~d 94 (210)
+|+++|+++||||||+++|..+.+....++..................+.+||+||+..++..+...++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999887766555433323222222223456799999999999998888888988 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCC
Q 028329 95 VTRR-DTFTNLSDVWAKEIDLYS-TNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 95 ~~~~-~s~~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~ 134 (210)
+.+. .++.....++...+.... ....+|++|++||+|+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 9997 677777774555443321 235799999999999853
No 178
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=1.7e-20 Score=137.75 Aligned_cols=159 Identities=20% Similarity=0.182 Sum_probs=106.3
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc----------ccccc
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE----------RFRTL 78 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~ 78 (210)
.....++|+++|++|+|||||+++|++..+ ....++++.+........ ...+.+||+||.. .+...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 344679999999999999999999998763 444446665554433332 3679999999942 22233
Q ss_pred hhhccc---CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec--HHHHHHHHHHhCCc
Q 028329 79 TSSYYR---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT--KKEGINFAREYGCL 153 (210)
Q Consensus 79 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~ 153 (210)
...++. ..+++++++|.+++.+..... +...+. ..+.|+++++||+|+....... .+.+.........+
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--i~~~l~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 170 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQ--MIEWLK----EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE 170 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHHH--HHHHHH----HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 333444 346888899988765443321 223332 2468899999999986443221 22233333333678
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHH
Q 028329 154 FIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 154 ~~~~sa~~~~~i~~~~~~l~~~~~ 177 (210)
++++|++++.|++++++.|.+.+.
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999887764
No 179
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.86 E-value=2.1e-20 Score=156.10 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=108.4
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
..+..+|+++|++++|||||+++|.+..+..... ..+.+.....+...+. ..+.||||||+..+..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 3467899999999999999999999877654322 2222333333343322 2789999999999999888888999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---------CcEEEEccC
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG---------CLFIECSAK 160 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~ 160 (210)
++|+|+++...-..... + .. ....++|+++++||+|++.. ..+.+...+...+ .+++++||+
T Consensus 163 ILVVda~dgv~~qT~e~-i-~~----~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk 233 (587)
T TIGR00487 163 VLVVAADDGVMPQTIEA-I-SH----AKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSAL 233 (587)
T ss_pred EEEEECCCCCCHhHHHH-H-HH----HHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence 99999987533222221 2 11 22346899999999998643 2223333332222 469999999
Q ss_pred CCCCHHHHHHHHHH
Q 028329 161 TRVNVQQCFEELVL 174 (210)
Q Consensus 161 ~~~~i~~~~~~l~~ 174 (210)
+|.|++++|+++..
T Consensus 234 tGeGI~eLl~~I~~ 247 (587)
T TIGR00487 234 TGDGIDELLDMILL 247 (587)
T ss_pred CCCChHHHHHhhhh
Confidence 99999999999874
No 180
>PRK11058 GTPase HflX; Provisional
Probab=99.86 E-value=8.5e-21 Score=153.23 Aligned_cols=158 Identities=20% Similarity=0.152 Sum_probs=106.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc--ccchh------hccc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF--RTLTS------SYYR 84 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~------~~~~ 84 (210)
..+|+++|.+|||||||+|+|++..... ..+..+.+.....+.+.+. ..+.+|||+|.... ...+. ..+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 3689999999999999999999876432 2222222233333444332 25789999997321 12222 2357
Q ss_pred CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEEccCCCC
Q 028329 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRV 163 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~ 163 (210)
.+|++++|+|++++.++..+.. |...+... ...++|+++|+||+|+...... ... ....+.+ ++.+||++|.
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~-v~~iL~el-~~~~~pvIiV~NKiDL~~~~~~---~~~--~~~~~~~~~v~ISAktG~ 348 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEA-VNTVLEEI-DAHEIPTLLVMNKIDMLDDFEP---RID--RDEENKPIRVWLSAQTGA 348 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHH-HHHHHHHh-ccCCCCEEEEEEcccCCCchhH---HHH--HHhcCCCceEEEeCCCCC
Confidence 8999999999999988777654 55555442 2346899999999998543111 111 1123445 5889999999
Q ss_pred CHHHHHHHHHHHHHcC
Q 028329 164 NVQQCFEELVLKILDT 179 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~ 179 (210)
|+++++++|.+.+...
T Consensus 349 GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 349 GIPLLFQALTERLSGE 364 (426)
T ss_pred CHHHHHHHHHHHhhhc
Confidence 9999999999988543
No 181
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=9.9e-21 Score=154.85 Aligned_cols=148 Identities=22% Similarity=0.174 Sum_probs=103.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeee--EEEEEEECCeEEEEEEEeCCCccc--------cccchhhccc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDF--KVKYVDVGGKKLKLAIWDTAGQER--------FRTLTSSYYR 84 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~ 84 (210)
++|+++|.+|||||||+++|.+.........++.+. ....+..++ ..+.+|||||... +.......+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 589999999999999999999877543333333333 333344444 6789999999876 2233445678
Q ss_pred CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEEccCCCC
Q 028329 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRV 163 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~ 163 (210)
.+|++++|+|+++..+.... .+...+.. .+.|+++|+||+|+.... ..... +..+++. ++++||+++.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~----~~~piilv~NK~D~~~~~----~~~~~-~~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE--EIAKILRK----SNKPVILVVNKVDGPDEE----ADAYE-FYSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHH----cCCcEEEEEECccCccch----hhHHH-HHhcCCCCCEEEEeeCCC
Confidence 89999999999886443222 12233332 368999999999975321 12222 2355664 8999999999
Q ss_pred CHHHHHHHHHHH
Q 028329 164 NVQQCFEELVLK 175 (210)
Q Consensus 164 ~i~~~~~~l~~~ 175 (210)
|++++|+++...
T Consensus 149 gv~~l~~~I~~~ 160 (435)
T PRK00093 149 GIGDLLDAILEE 160 (435)
T ss_pred CHHHHHHHHHhh
Confidence 999999999873
No 182
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=1.5e-20 Score=136.06 Aligned_cols=148 Identities=19% Similarity=0.192 Sum_probs=99.4
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc----------cccc
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER----------FRTL 78 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~ 78 (210)
+....++|+++|++|+|||||+++|++..+ ....++.+.+.....+..++ .+.+||+||... +...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 346779999999999999999999998763 33444555555444444432 589999999532 2222
Q ss_pred hhhccc---CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHhC--
Q 028329 79 TSSYYR---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VTKKEGINFAREYG-- 151 (210)
Q Consensus 79 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~-- 151 (210)
...+++ .+|++++|+|++++.+..... +...+.. .++|+++++||+|+..... ...++++..+...+
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~~----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~ 164 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLRE----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD 164 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHHH----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence 233443 358999999998765544442 3333332 4689999999999864322 22344445555543
Q ss_pred CcEEEEccCCCCCHH
Q 028329 152 CLFIECSAKTRVNVQ 166 (210)
Q Consensus 152 ~~~~~~sa~~~~~i~ 166 (210)
.+++++||++|+|++
T Consensus 165 ~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 165 PSVQLFSSLKKTGID 179 (179)
T ss_pred CceEEEECCCCCCCC
Confidence 479999999999873
No 183
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=2.6e-20 Score=152.39 Aligned_cols=161 Identities=24% Similarity=0.163 Sum_probs=110.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------hh
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-----------TS 80 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~ 80 (210)
...++|+++|.+|+|||||+++|++.......+.++++.......+......+.+|||||....... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 3579999999999999999999998765444455555555444433333456789999995332211 12
Q ss_pred hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHH-HHHHH----hCCcEE
Q 028329 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGI-NFARE----YGCLFI 155 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~ 155 (210)
..+..+|++++|+|++++.+..... +...+. ..++|+++++||+|+..... .++.. .+... ..++++
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~----~~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~ 322 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR--IAGLAL----EAGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIV 322 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEE
Confidence 3567899999999999887665443 333332 24689999999999863321 11111 11111 246899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHcCC
Q 028329 156 ECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 156 ~~sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
++||+++.|++++|+.+.+...+..
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999988765544
No 184
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=3.4e-20 Score=157.06 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=112.2
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCcc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQ 87 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (210)
..+..+|+++|++++|||||+++|....+..... +.....+...+..++....+.||||||+..|..++...+..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3467899999999999999999999876653221 2222233333444455688999999999999999988899999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-------HHhC--CcEEEEc
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-------REYG--CLFIECS 158 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~s 158 (210)
++|+|+|+++......... |. .+ ...++|++|++||+|++... .+.+.... ..++ ++++++|
T Consensus 321 iaILVVDA~dGv~~QT~E~-I~-~~----k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VS 391 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEA-IN-YI----QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPIS 391 (742)
T ss_pred EEEEEEECcCCCChhhHHH-HH-HH----HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEE
Confidence 9999999987543322221 21 12 23568999999999986532 12222211 2233 6799999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 028329 159 AKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 159 a~~~~~i~~~~~~l~~~~ 176 (210)
|++|.|++++|+++....
T Consensus 392 AktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 392 ASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCCHHHHHHhhhhhh
Confidence 999999999999988754
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=2.7e-20 Score=159.81 Aligned_cols=156 Identities=18% Similarity=0.136 Sum_probs=109.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhcc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER--------FRTLTSSYY 83 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~ 83 (210)
....+|+++|.+|||||||+|+|++.......+.++.+..............+.+|||||... +.......+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 345789999999999999999999877655555666665554443333345789999999653 223344567
Q ss_pred cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCC
Q 028329 84 RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTR 162 (210)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~ 162 (210)
..+|++++|+|+++.-. .....|...++. .++|+++|+||+|+..... ....+ ..++. ..+++||++|
T Consensus 353 ~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~----~~~pvIlV~NK~D~~~~~~----~~~~~-~~lg~~~~~~iSA~~g 421 (712)
T PRK09518 353 SLADAVVFVVDGQVGLT--STDERIVRMLRR----AGKPVVLAVNKIDDQASEY----DAAEF-WKLGLGEPYPISAMHG 421 (712)
T ss_pred HhCCEEEEEEECCCCCC--HHHHHHHHHHHh----cCCCEEEEEECcccccchh----hHHHH-HHcCCCCeEEEECCCC
Confidence 89999999999986432 222225555543 5789999999999854311 11121 22343 3678999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 028329 163 VNVQQCFEELVLKILD 178 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~ 178 (210)
.|++++|+++.+.+.+
T Consensus 422 ~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 422 RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCchHHHHHHHHhccc
Confidence 9999999999998854
No 186
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=2.3e-20 Score=131.83 Aligned_cols=151 Identities=23% Similarity=0.178 Sum_probs=102.9
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC-CeEEEEEEEeCCCcccccc-------chhhcccCccEEE
Q 028329 19 MIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFRT-------LTSSYYRGAQGII 90 (210)
Q Consensus 19 v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d~~i 90 (210)
++|++|+|||||++++++..........+.+......... .....+.+||+||...... .....+..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5799999999999999987654333322222222222221 1156799999999765543 3334678899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH---HHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK---EGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
+|+|+++..+..... +.... ...+.|+++++||.|+......... .........+.+++++|++++.|+.+
T Consensus 81 ~v~~~~~~~~~~~~~--~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 81 FVVDADLRADEEEEK--LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEeCCCCCCHHHHH--HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence 999999987766554 22222 2357899999999998654433222 11223333467899999999999999
Q ss_pred HHHHHHHH
Q 028329 168 CFEELVLK 175 (210)
Q Consensus 168 ~~~~l~~~ 175 (210)
+++++.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99998865
No 187
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.85 E-value=4.6e-20 Score=154.52 Aligned_cols=155 Identities=21% Similarity=0.254 Sum_probs=110.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCC---CCCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDN---FEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
+.|+++|++++|||||+++|++.. +++.+ ...+.++....+..++ ..+.+||+||++.+.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999999643 22222 2333333333344444 78999999999998888888889999999
Q ss_pred EEEeCCCc---ccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee--cHHHHHHHHHHh----CCcEEEEccC
Q 028329 91 MVYDVTRR---DTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV--TKKEGINFAREY----GCLFIECSAK 160 (210)
Q Consensus 91 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~sa~ 160 (210)
+|+|+++. .+.+.+ ..+.. .++| ++||+||+|+...... ..+++..+.... +++++++||+
T Consensus 79 LVVDa~~G~~~qT~ehl-----~il~~----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL-----AVLDL----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred EEEECCCCCcHHHHHHH-----HHHHH----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 99999984 333222 22222 3566 9999999999654422 233445555544 4679999999
Q ss_pred CCCCHHHHHHHHHHHHHcCC
Q 028329 161 TRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~~ 180 (210)
+|.|+++++.++...+....
T Consensus 150 tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 150 TGQGIGELKKELKNLLESLD 169 (581)
T ss_pred CCCCchhHHHHHHHHHHhCC
Confidence 99999999999887775543
No 188
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.84 E-value=8.4e-20 Score=155.96 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=108.2
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
..+...|+++|+.++|||||+++|....+..... ....+.....+..+ ...+.||||||+..|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 4678999999999999999999998776543221 22222222333333 35789999999999999888888999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH-------HHHHhC--CcEEEEccC
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN-------FAREYG--CLFIECSAK 160 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~sa~ 160 (210)
|+|||+++...-..... | .. ....++|+||++||+|++... .+.+.. +...++ ++++++||+
T Consensus 365 ILVVdAddGv~~qT~e~-i-~~----a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk 435 (787)
T PRK05306 365 VLVVAADDGVMPQTIEA-I-NH----AKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAK 435 (787)
T ss_pred EEEEECCCCCCHhHHHH-H-HH----HHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence 99999988532222211 2 11 223568999999999996432 111111 122233 679999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028329 161 TRVNVQQCFEELVLK 175 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~ 175 (210)
+|.|++++|++|...
T Consensus 436 tG~GI~eLle~I~~~ 450 (787)
T PRK05306 436 TGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCchHHHHhhhhh
Confidence 999999999998753
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=3e-20 Score=159.56 Aligned_cols=160 Identities=21% Similarity=0.187 Sum_probs=108.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEEEEECCeEEEEEEEeCCCccc----------cccc-h
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKYVDVGGKKLKLAIWDTAGQER----------FRTL-T 79 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~----------~~~~-~ 79 (210)
..++|+++|.+|||||||+++|++.......+.++++.. ...+.+++. .+.+|||||... +... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999998875333333333332 333445554 466999999532 1111 1
Q ss_pred hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-HHh----CCcE
Q 028329 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-REY----GCLF 154 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~~ 154 (210)
...++.+|++++|+|+++..+...... + ..+. ..++|+++|+||+|+...... +...... ... ..++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~-~~~~----~~~~piIiV~NK~DL~~~~~~--~~~~~~~~~~l~~~~~~~i 598 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-M-SMAV----DAGRALVLVFNKWDLMDEFRR--QRLERLWKTEFDRVTWARR 598 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-H-HHHH----HcCCCEEEEEEchhcCChhHH--HHHHHHHHHhccCCCCCCE
Confidence 234678999999999999887776643 3 3332 246899999999999643221 1111111 111 2467
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329 155 IECSAKTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 155 ~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
+++||++|.|++++|+.+.+.+.+....
T Consensus 599 i~iSAktg~gv~~L~~~i~~~~~~~~~~ 626 (712)
T PRK09518 599 VNLSAKTGWHTNRLAPAMQEALESWDQR 626 (712)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999988765444
No 190
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.84 E-value=1.5e-19 Score=155.05 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=116.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc----------hhhc-
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL----------TSSY- 82 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~~- 82 (210)
.++|+++|+||||||||+|+|++... .....++.|+......+......+.+||+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 47899999999999999999997654 44556777777776666667778999999997665431 1122
Q ss_pred -ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329 83 -YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 83 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 161 (210)
...+|++++|+|+++.+... . +...+.+ .++|+++++||+|+.+.+... .+...+.+.++++++++|+++
T Consensus 82 ~~~~aD~vI~VvDat~ler~l---~-l~~ql~e----~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNL---Y-LTLQLLE----LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred hccCCCEEEEEecCCcchhhH---H-HHHHHHH----cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeec
Confidence 24789999999998865432 2 3333332 468999999999986555443 345677788899999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028329 162 RVNVQQCFEELVLKI 176 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~ 176 (210)
+.|++++++.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999988765
No 191
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=2.9e-20 Score=146.80 Aligned_cols=152 Identities=21% Similarity=0.149 Sum_probs=114.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc---------cchhhcccC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR---------TLTSSYYRG 85 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~ 85 (210)
..|+++|.||||||||+|||++...+.+...+|.|..............+.++||+|.+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999988888888888776655554455568999999955322 234456788
Q ss_pred ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccCCCCC
Q 028329 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAKTRVN 164 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~ 164 (210)
||++++|+|....-+-.. ......++ ..++|+++|+||+|-. ..++....+..+|+ .++.+||.+|.|
T Consensus 84 ADvilfvVD~~~Git~~D--~~ia~~Lr----~~~kpviLvvNK~D~~-----~~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 84 ADVILFVVDGREGITPAD--EEIAKILR----RSKKPVILVVNKIDNL-----KAEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHH----hcCCCEEEEEEcccCc-----hhhhhHHHHHhcCCCCceEeehhhccC
Confidence 999999999987433211 11333333 2468999999999965 22233344556777 499999999999
Q ss_pred HHHHHHHHHHHHH
Q 028329 165 VQQCFEELVLKIL 177 (210)
Q Consensus 165 i~~~~~~l~~~~~ 177 (210)
+.+++++++..+.
T Consensus 153 i~dLld~v~~~l~ 165 (444)
T COG1160 153 IGDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999984
No 192
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.84 E-value=3.4e-20 Score=135.28 Aligned_cols=158 Identities=21% Similarity=0.205 Sum_probs=106.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----------------CCceeeeEEEEEEEC--CeEEEEEEEeCCCcc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-----------------PTIGVDFKVKYVDVG--GKKLKLAIWDTAGQE 73 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~ 73 (210)
..++|+++|+.++|||||+.+|......... ...+.+......... .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999854321110 011222222222222 456789999999999
Q ss_pred ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-cHHHHH-HHHHHh-
Q 028329 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-TKKEGI-NFAREY- 150 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~-~~~~~~- 150 (210)
.+.......+..+|++|+|+|+.+....... . .+..+. ..++|++|++||+|+...+.. ..++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~-~l~~~~----~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE-E-HLKILR----ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-H-HHHHHH----HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeecccccccccc-c-cccccc----ccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 8888888889999999999999977443222 2 333333 246889999999998722111 111122 222222
Q ss_pred -----CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 151 -----GCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 151 -----~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
.++++.+||.+|.|++++++.|.+.+
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 35799999999999999999998865
No 193
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=7.3e-21 Score=130.94 Aligned_cols=164 Identities=27% Similarity=0.369 Sum_probs=122.6
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCC---CCCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN---FEELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR 84 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 84 (210)
....+.|+++|.-++|||||+..+.... +....+ ++......-.+.++ ...+.+||.+|++..+++|..+|.
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--NAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--cceeEEEEcCChHHHHHHHHHHHH
Confidence 4456889999999999999998876332 111111 11111222223333 567999999999999999999999
Q ss_pred CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHH---H---hCCcEEEEc
Q 028329 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAR---E---YGCLFIECS 158 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~---~---~~~~~~~~s 158 (210)
.++++++++|+++++.|+.....+...+.. -.-.++|+++.+||.|+.... ...++...+. . ...++.++|
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~-E~leg~p~L~lankqd~q~~~--~~~El~~~~~~~e~~~~rd~~~~pvS 168 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVEN-EKLEGAPVLVLANKQDLQNAM--EAAELDGVFGLAELIPRRDNPFQPVS 168 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHH-HHhcCCchhhhcchhhhhhhh--hHHHHHHHhhhhhhcCCccCccccch
Confidence 999999999999999999998866555544 455689999999999986443 2333333332 2 235699999
Q ss_pred cCCCCCHHHHHHHHHHHHHcC
Q 028329 159 AKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 159 a~~~~~i~~~~~~l~~~~~~~ 179 (210)
|.+|+||++...|+...+.++
T Consensus 169 al~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 169 ALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999999777
No 194
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.84 E-value=1.2e-19 Score=152.30 Aligned_cols=159 Identities=20% Similarity=0.237 Sum_probs=113.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCC-----------CC---CCCceeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFE-----------EL---SPTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQE 73 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~-----------~~---~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~ 73 (210)
..-+|+++|+.++|||||+.+|+..... .. ....+.++....+.+ ++..+.+.||||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 3458999999999999999999753210 00 012344443322222 5567899999999999
Q ss_pred ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc
Q 028329 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL 153 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 153 (210)
.+...+...+..+|++++|+|+++......... |..... .++|+++|+||+|+..... ......+....++.
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~~~-----~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~ 157 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLALE-----NDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGID 157 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH-----CCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCC
Confidence 999889999999999999999998766555544 433322 3688999999999864321 11122333344554
Q ss_pred ---EEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329 154 ---FIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 154 ---~~~~sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
++.+||++|.|+++++++|.+.+...
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 89999999999999999999887544
No 195
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.83 E-value=9.1e-20 Score=152.93 Aligned_cols=144 Identities=18% Similarity=0.221 Sum_probs=103.3
Q ss_pred cCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE--EEEEECCeEEEEEEEeCCCccccccc------hhhcc--cCccEEE
Q 028329 21 GDSGVGKSSLLLSFTSDNFEELSPTIGVDFKV--KYVDVGGKKLKLAIWDTAGQERFRTL------TSSYY--RGAQGII 90 (210)
Q Consensus 21 G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~i 90 (210)
|++|||||||+|+|++... ...+.++.+... ..+.+++ ..+.+||+||...+... ...++ ..+|+++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence 8999999999999998765 233344444443 3344444 45789999998776543 22222 4789999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
+|+|+++.+.. .. +...+. ..++|+++++||+|+.+.+.+. .+...+.+..+++++++||+++.|++++++
T Consensus 78 ~VvDat~ler~---l~-l~~ql~----~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 78 NVVDASNLERN---LY-LTLQLL----ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKD 148 (591)
T ss_pred EEecCCcchhh---HH-HHHHHH----hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 99999875432 22 222222 2468999999999986554443 345677788899999999999999999999
Q ss_pred HHHHHH
Q 028329 171 ELVLKI 176 (210)
Q Consensus 171 ~l~~~~ 176 (210)
++.+..
T Consensus 149 ~i~~~~ 154 (591)
T TIGR00437 149 AIRKAI 154 (591)
T ss_pred HHHHHh
Confidence 998764
No 196
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=5.4e-20 Score=128.42 Aligned_cols=171 Identities=32% Similarity=0.545 Sum_probs=141.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
.-.++++++|+.|.||||++++...+.|...++ +.+.+.......-+...+++..||+.|++.+..+...++=...+.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 456999999999999999999999999987666 8888887776655555799999999999999999988888899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
++||++..-++.++.. |...+.+. ..++||+++|||.|..... .......+.+..++.+++.|++.+.|.+.-|-
T Consensus 88 imFdVtsr~t~~n~~r-whrd~~rv--~~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl 162 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPR-WHRDLVRV--RENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFL 162 (216)
T ss_pred EEeeeeehhhhhcchH-HHHHHHHH--hcCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchH
Confidence 9999999999999998 55555443 4569999999999975433 12223444556678899999999999999999
Q ss_pred HHHHHHHcCCCcccccc
Q 028329 171 ELVLKILDTPSLLAEGS 187 (210)
Q Consensus 171 ~l~~~~~~~~~~~~~~~ 187 (210)
|+.+.+.....+..-+.
T Consensus 163 ~LarKl~G~p~Lefva~ 179 (216)
T KOG0096|consen 163 WLARKLTGDPSLEFVAM 179 (216)
T ss_pred HHhhhhcCCCCeEEEec
Confidence 99999998887764443
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.82 E-value=2.3e-19 Score=146.21 Aligned_cols=156 Identities=18% Similarity=0.075 Sum_probs=105.0
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCC------------------------------CCCCceeeeEEEEEEECCe
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE------------------------------LSPTIGVDFKVKYVDVGGK 60 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 60 (210)
....++|+++|++++|||||+++|+...... .....+.|.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 3456999999999999999999998432110 0114566666666666667
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce---
Q 028329 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV--- 137 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~--- 137 (210)
...+.+||+||+..+.......+..+|++++|+|+++...+......+...... ....|++|++||+|+.....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~---~~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART---LGINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH---cCCCeEEEEEEccccccccHHHH
Confidence 788999999999877665556678899999999998732222221112222322 12246899999999964221
Q ss_pred -ecHHHHHHHHHHhC-----CcEEEEccCCCCCHHHHH
Q 028329 138 -VTKKEGINFAREYG-----CLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 138 -~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~ 169 (210)
...+++..++...+ ++++++||++|.|+++..
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 12234455555554 469999999999998744
No 198
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.82 E-value=2.7e-19 Score=141.70 Aligned_cols=155 Identities=21% Similarity=0.171 Sum_probs=120.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhccc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL--------TSSYYR 84 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~ 84 (210)
.-++++++|.||||||||+|.|++.+-+.+++.+|+|.......++-.++.+.+.||+|..+.... ....+.
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIE 295 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999888888778888999999996544432 233577
Q ss_pred CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCC
Q 028329 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVN 164 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 164 (210)
.||.+++|+|.+.+.+-....- +. ....+.|+++|.||.|+......... ....+.+++.+|++++.|
T Consensus 296 ~ADlvL~v~D~~~~~~~~d~~~--~~-----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 296 EADLVLFVLDASQPLDKEDLAL--IE-----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEG 363 (454)
T ss_pred hCCEEEEEEeCCCCCchhhHHH--HH-----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccC
Confidence 8999999999998633333322 11 23456899999999999765442211 112244689999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 028329 165 VQQCFEELVLKILDT 179 (210)
Q Consensus 165 i~~~~~~l~~~~~~~ 179 (210)
++.+.+.|.+.+...
T Consensus 364 l~~L~~~i~~~~~~~ 378 (454)
T COG0486 364 LDALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999988887665
No 199
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=3.5e-19 Score=140.68 Aligned_cols=164 Identities=23% Similarity=0.144 Sum_probs=121.1
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc----------ccc-chhh
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER----------FRT-LTSS 81 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~-~~~~ 81 (210)
..+||+++|.||+|||||+|+|++.......+..|+|.......+....-.+.++||+|... |.. -...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 67999999999999999999999999888888889888888877765566688889999322 211 1233
Q ss_pred cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----hCCcEEE
Q 028329 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE-----YGCLFIE 156 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~ 156 (210)
.+..+|++++|+|++.+-+.+... ... +....+.+++|++||+|+.++.....++.+..... -.++++.
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~--ia~----~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLR--IAG----LIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHH--HHH----HHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 467899999999999886544332 222 23356789999999999866533333333222222 1357999
Q ss_pred EccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329 157 CSAKTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 157 ~sa~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
+||+++.++..+|+.+..........
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~r 356 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATRR 356 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhccc
Confidence 99999999999999988877554443
No 200
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.82 E-value=9.7e-22 Score=136.70 Aligned_cols=177 Identities=38% Similarity=0.576 Sum_probs=145.1
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCe-EEEEEEEeCCCccccccchhhcccCccE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGK-KLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
++..++++|+|+-++|||++++++....+...+. +.+..+.......+.. .+++.|||..|++.+..+..-+++.+.+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 4667999999999999999999999888776665 8887776555554443 4789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhh---ccCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHHHhCCc-EEEEccCCCC
Q 028329 89 IIMVYDVTRRDTFTNLSDVWAKEIDLY---STNQDCIKLLVGNKVDKESERVV-TKKEGINFAREYGCL-FIECSAKTRV 163 (210)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~-~~~~sa~~~~ 163 (210)
.++|||.++..+|+.+.. |.+.+... .+..++|+++.+||+|+...... .......+.+++|+. .+++|++.+.
T Consensus 102 ~~iVfdvt~s~tfe~~sk-wkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSK-WKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred eEEEEEccccccccHHHH-HHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 999999999999999988 88877543 44567899999999998544332 245667778888885 9999999999
Q ss_pred CHHHHHHHHHHHHHcCCCccccccc
Q 028329 164 NVQQCFEELVLKILDTPSLLAEGSK 188 (210)
Q Consensus 164 ~i~~~~~~l~~~~~~~~~~~~~~~~ 188 (210)
+++|.-..+.+.++-+..+......
T Consensus 181 ni~Ea~r~lVe~~lvnd~q~~~s~~ 205 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVNDEQPIKSSA 205 (229)
T ss_pred ChhHHHHHHHHHHHhhccCCccccc
Confidence 9999999999999888755444333
No 201
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.81 E-value=1.6e-18 Score=130.24 Aligned_cols=151 Identities=23% Similarity=0.164 Sum_probs=97.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhcccCcc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFE-ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYRGAQ 87 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d 87 (210)
+|+++|++|||||||+++|++.... ..++....+...-.+.+. ...+.+||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 7899999999999999999976532 222211112222223333 4678999999964332 12345688999
Q ss_pred EEEEEEeCCCccc-HHHHHHHHHHH-----------------------------------------Hhhh----------
Q 028329 88 GIIMVYDVTRRDT-FTNLSDVWAKE-----------------------------------------IDLY---------- 115 (210)
Q Consensus 88 ~~i~v~d~~~~~s-~~~~~~~~~~~-----------------------------------------~~~~---------- 115 (210)
++++|+|+++.+. ...+.. .++. ++.+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~-~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 80 LILMVLDATKPEGHREILER-ELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred EEEEEecCCcchhHHHHHHH-HHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 9999999987653 222222 2211 1110
Q ss_pred -------------ccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 116 -------------STNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 116 -------------~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
.+...+|+++|+||+|+.. .++...++. ...++++||+++.|++++|+.+.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 1123469999999999853 233333333 34589999999999999999998765
No 202
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=3.1e-19 Score=132.18 Aligned_cols=148 Identities=22% Similarity=0.184 Sum_probs=96.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------------------CCceeeeEEEEEEECCeEEEEE
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELS------------------------------PTIGVDFKVKYVDVGGKKLKLA 65 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 65 (210)
||+++|++|+|||||+++|+........ ...+.+.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999754321110 0133444444444444556789
Q ss_pred EEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee----cHH
Q 028329 66 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV----TKK 141 (210)
Q Consensus 66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----~~~ 141 (210)
+|||||+..+.......+..+|++++|+|+++...-.. .. ....+.. ....++++|+||+|+...... ...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~-~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RR-HSYILSL---LGIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HH-HHHHHHH---cCCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 99999998876666667889999999999987642221 11 2222222 112457889999998643211 122
Q ss_pred HHHHHHHHhCC---cEEEEccCCCCCHHHH
Q 028329 142 EGINFAREYGC---LFIECSAKTRVNVQQC 168 (210)
Q Consensus 142 ~~~~~~~~~~~---~~~~~sa~~~~~i~~~ 168 (210)
+...+....+. +++.+||+++.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 34444555553 4899999999998753
No 203
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.81 E-value=8.3e-19 Score=142.91 Aligned_cols=156 Identities=20% Similarity=0.109 Sum_probs=105.2
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCC--CC----------------------------CCCCCceeeeEEEEEEECCe
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDN--FE----------------------------ELSPTIGVDFKVKYVDVGGK 60 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~--~~----------------------------~~~~~~~~~~~~~~~~~~~~ 60 (210)
....++|+++|+.++|||||+.+|+... .. ......+.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 3456999999999999999999997521 11 00012344555555556666
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHH-HHHHHhhhccCCCCcEEEEEeCCCCCCCce--
Q 028329 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDV-WAKEIDLYSTNQDCIKLLVGNKVDKESERV-- 137 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~piivv~nK~D~~~~~~-- 137 (210)
...+.+||+||+..+.......+..+|++++|+|+++.+++...... +...... ....|++|++||+|+.....
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~---~~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART---LGINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH---cCCCeEEEEEEChhccCccHHH
Confidence 78899999999988776666667889999999999988543222111 1122221 12357899999999964221
Q ss_pred --ecHHHHHHHHHHhC-----CcEEEEccCCCCCHHHHH
Q 028329 138 --VTKKEGINFAREYG-----CLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 138 --~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~ 169 (210)
....++..++...+ ++++++||+++.|+.+.+
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 12344555666555 569999999999998744
No 204
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.80 E-value=1.3e-18 Score=118.83 Aligned_cols=136 Identities=20% Similarity=0.254 Sum_probs=97.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc----cccccchhhcccCccEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ----ERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~~~~d~~i 90 (210)
-||+++|+.|||||||+++|.+... .+..|....+. =.++||||. ..+..-.......||.++
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 3899999999999999999998654 22223332222 123699992 333333344456899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEEccCCCCCHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCF 169 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~ 169 (210)
+|.|++++.+.-.-. +. ...+.|+|-|+||+|++. .....+.++.+...-|+. +|++|+.+++|++++.
T Consensus 69 ll~dat~~~~~~pP~--fa-------~~f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 69 LLQDATEPRSVFPPG--FA-------SMFNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELK 138 (143)
T ss_pred EEecCCCCCccCCch--hh-------cccCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHH
Confidence 999999876532221 11 123579999999999973 234556778888888885 8999999999999999
Q ss_pred HHHH
Q 028329 170 EELV 173 (210)
Q Consensus 170 ~~l~ 173 (210)
++|.
T Consensus 139 ~~L~ 142 (143)
T PF10662_consen 139 DYLE 142 (143)
T ss_pred HHHh
Confidence 9874
No 205
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.80 E-value=1.7e-18 Score=139.99 Aligned_cols=161 Identities=17% Similarity=0.134 Sum_probs=104.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEE--------------------EEEECC------eEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVK--------------------YVDVGG------KKLKL 64 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~~~~~--------------------~~~~~~------~~~~~ 64 (210)
..++|+++|++++|||||+++|.+........ ..+.+...- ....++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 46899999999999999999997542211111 111111110 000011 13578
Q ss_pred EEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHH
Q 028329 65 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKE 142 (210)
Q Consensus 65 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~ 142 (210)
.+||+||++.+...+...+..+|++++|+|+++......... .+..+.. ....|+++++||+|+...... ..++
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~---~gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEI---IGIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHH---cCCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999998888888888999999999996431112222 2222222 122468999999998643221 1233
Q ss_pred HHHHHHHh---CCcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329 143 GINFAREY---GCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 143 ~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~ 177 (210)
+..+.... +++++++||+++.|+++++++|...+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 34443332 567999999999999999999988664
No 206
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.79 E-value=1.8e-18 Score=144.34 Aligned_cols=154 Identities=19% Similarity=0.151 Sum_probs=101.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CceeeeEEEEEE------------ECCeEEEEEEEeCCCccccc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGVDFKVKYVD------------VGGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~~~~~l~D~~g~~~~~ 76 (210)
..-|+++|++++|||||+++|.+..+....+ +.+.+....... +......+.+|||||++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 4569999999999999999999876643222 112211111100 00011238899999999999
Q ss_pred cchhhcccCccEEEEEEeCCCc---ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee------------cHH
Q 028329 77 TLTSSYYRGAQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV------------TKK 141 (210)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~------------~~~ 141 (210)
.++...+..+|++++|+|+++. .+++.+. .+. ..++|+++++||+|+...+.. ...
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~----~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILR----MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHH----HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 9888889999999999999974 3333322 222 236899999999998532110 000
Q ss_pred HH------------HHHHH------------Hh--CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 142 EG------------INFAR------------EY--GCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 142 ~~------------~~~~~------------~~--~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
.+ .++.. .+ .++++++||++|+|+++++.++....
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 00 01110 11 35799999999999999999887544
No 207
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.79 E-value=1.8e-18 Score=129.65 Aligned_cols=178 Identities=17% Similarity=0.139 Sum_probs=123.4
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc---------cc--
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF---------RT-- 77 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~-- 77 (210)
++..+.+.|+++|.||+|||||.|.+.+.+....+.-..+|.......+.....++.|+||||...- .+
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 4456789999999999999999999999998887776666666666666667789999999992111 11
Q ss_pred -chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-------------c--HH
Q 028329 78 -LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-------------T--KK 141 (210)
Q Consensus 78 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-------------~--~~ 141 (210)
.....+..+|++++|+|+++.-...... .+..+..+ ..+|-++|.||.|....... . ..
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl 221 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL 221 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence 1223456799999999999633222221 33334443 46888999999997433211 1 11
Q ss_pred HHHHHHHHh----------C---C-cEEEEccCCCCCHHHHHHHHHHHHHcCCCcccccccCcc
Q 028329 142 EGINFAREY----------G---C-LFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLK 191 (210)
Q Consensus 142 ~~~~~~~~~----------~---~-~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 191 (210)
+..+.+... | + .+|.+||++|+|++++-++|..........+.++.-...
T Consensus 222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~ 285 (379)
T KOG1423|consen 222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEE 285 (379)
T ss_pred hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCccccccc
Confidence 111111111 1 2 289999999999999999999999999888877654433
No 208
>PRK10218 GTP-binding protein; Provisional
Probab=99.79 E-value=6.5e-18 Score=141.46 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=115.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhc--CCCCCC-------------CCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTS--DNFEEL-------------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT 77 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 77 (210)
...+|+++|+.++|||||+++|+. +.+... ..+.+.++......+......+.+||+||+..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 346899999999999999999986 323221 12456666666666677788999999999999999
Q ss_pred chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHH-------
Q 028329 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFARE------- 149 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~------- 149 (210)
.+..+++.+|++++|+|+.+......... |.. .. ..++|.++++||+|++..+. ...+++..++..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~-l~~-a~----~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRFV-TKK-AF----AYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHHH-HHH-HH----HcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 99999999999999999987643322221 322 22 24688899999999864432 122233333322
Q ss_pred hCCcEEEEccCCCC----------CHHHHHHHHHHHHHcC
Q 028329 150 YGCLFIECSAKTRV----------NVQQCFEELVLKILDT 179 (210)
Q Consensus 150 ~~~~~~~~sa~~~~----------~i~~~~~~l~~~~~~~ 179 (210)
..++++.+||++|. ++..+++.+++.+...
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 34679999999998 5888888888877544
No 209
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.79 E-value=4e-18 Score=121.63 Aligned_cols=151 Identities=21% Similarity=0.212 Sum_probs=97.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc----------cccchhhccc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER----------FRTLTSSYYR 84 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~~ 84 (210)
.|+++|++|+|||||++.+.++.+ +...++.+.+.....+..++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 378999999999999999995444 33444555555444444433 789999999533 2223333333
Q ss_pred ---CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHH--HhCCcEEEE
Q 028329 85 ---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TKKEGINFAR--EYGCLFIEC 157 (210)
Q Consensus 85 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~ 157 (210)
..+++++++|..+..+..... ....+.. ...|+++++||+|+...... .......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~--~~~~l~~----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLE--MLDWLEE----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHH--HHHHHHH----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 467899999998764322211 2233332 24789999999998533221 1122222222 234579999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 028329 158 SAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~ 175 (210)
|++++.++.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998765
No 210
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=1.1e-17 Score=122.32 Aligned_cols=147 Identities=16% Similarity=0.107 Sum_probs=99.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCC---------------CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNF---------------EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 78 (210)
.++|+++|+.++|||||+++|+.... .......+.+.......+......+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999975310 000114455555555556566678899999999888777
Q ss_pred hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHHHhC---
Q 028329 79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---TKKEGINFAREYG--- 151 (210)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~--- 151 (210)
....+..+|++++|+|+.....-. ... .+..+.. .++| +|+++||+|+...... ..+++..+....+
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~-~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TRE-HLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHH-HHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 777888999999999998753221 122 2333332 3455 7899999998532221 1223444444443
Q ss_pred --CcEEEEccCCCCCHH
Q 028329 152 --CLFIECSAKTRVNVQ 166 (210)
Q Consensus 152 --~~~~~~sa~~~~~i~ 166 (210)
++++++||++|.++.
T Consensus 156 ~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 DNTPIVRGSALKALEGD 172 (195)
T ss_pred cCCeEEEeeCccccCCC
Confidence 679999999999853
No 211
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.78 E-value=4.6e-18 Score=137.47 Aligned_cols=164 Identities=18% Similarity=0.187 Sum_probs=103.3
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEE----EEE----------E------C--C----eEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFKVK----YVD----------V------G--G----KKL 62 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~~~~~----~~~----------~------~--~----~~~ 62 (210)
....++|+++|+.++|||||+.+|.+........ ..+.+...- .+. + + + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 3456999999999999999999997532111110 222222211 000 0 0 0 135
Q ss_pred EEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--cH
Q 028329 63 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--TK 140 (210)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~ 140 (210)
.+.+||+||+..+..........+|++++|+|++++........ .+..+.. ..-.|+++|+||+|+...... ..
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l~~---~~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMALDI---IGIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHHHH---cCCCcEEEEEEeeccccchhHHHHH
Confidence 78999999998887666666677899999999996531111111 1122222 112468999999998654322 12
Q ss_pred HHHHHHHHHh---CCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 141 KEGINFAREY---GCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 141 ~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
+++..++... +.+++++||+++.|+++++++|...+..
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 3334443322 4679999999999999999999887643
No 212
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=2.4e-17 Score=115.12 Aligned_cols=159 Identities=21% Similarity=0.211 Sum_probs=115.6
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-----CC-CceeeeEEEEEEE----CCeEEEEEEEeCCCccccccch
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----SP-TIGVDFKVKYVDV----GGKKLKLAIWDTAGQERFRTLT 79 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-----~~-~~~~~~~~~~~~~----~~~~~~~~l~D~~g~~~~~~~~ 79 (210)
......||++.|+.++||||+++.+........ .. .-+.+.....+.+ .+....+.|++||||..+.-.|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 345678999999999999999999986653111 11 1110001111111 1123578999999999999999
Q ss_pred hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh--CCcEEEE
Q 028329 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREY--GCLFIEC 157 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~ 157 (210)
...++++.++|+++|.+++..+ +... ....+.. ...+|++|++||.|+...+ ..+.+.+..... .+++++.
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~-ii~f~~~---~~~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~~ 158 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEE-IIDFLTS---RNPIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIEI 158 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHH-HHHHHhh---ccCCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceeee
Confidence 9999999999999999999988 3333 3444443 2239999999999997554 455556555554 7889999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 028329 158 SAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~ 175 (210)
+|.++++..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999999888766
No 213
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.78 E-value=8.8e-18 Score=140.77 Aligned_cols=158 Identities=18% Similarity=0.222 Sum_probs=113.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC--CCCCC-------------CCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD--NFEEL-------------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS 80 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (210)
+|+++|+.++|||||+.+|+.. .+... ....+.++......+......+.+|||||+..|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999853 22111 11334555555555555678899999999999998888
Q ss_pred hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHHH-------hCC
Q 028329 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-TKKEGINFARE-------YGC 152 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~-------~~~ 152 (210)
..++.+|++++|+|+.+.. ...... |+..+.. .++|++|++||+|++..+.. ...+...++.. ..+
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~-~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRF-VLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHH-HHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 9999999999999998753 233333 4444433 46889999999998654321 12333343322 356
Q ss_pred cEEEEccCCCC----------CHHHHHHHHHHHHHcC
Q 028329 153 LFIECSAKTRV----------NVQQCFEELVLKILDT 179 (210)
Q Consensus 153 ~~~~~sa~~~~----------~i~~~~~~l~~~~~~~ 179 (210)
+++.+||+++. |+..+|+.+.+.+...
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 79999999995 7999999999887544
No 214
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.77 E-value=1.4e-18 Score=140.01 Aligned_cols=171 Identities=26% Similarity=0.323 Sum_probs=127.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
...+||+++|+.|+||||||-+|....|++.-|.....+. ....+.-..+...+.|++....-+......++.+|++++
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~-IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRIL-IPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccc-cCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 4569999999999999999999999999776663322221 113344445668889998766656666778999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhcc-CCCCcEEEEEeCCCCCCCceecHHH-HHHHHHHhC-C-cEEEEccCCCCCHHH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYST-NQDCIKLLVGNKVDKESERVVTKKE-GINFAREYG-C-LFIECSAKTRVNVQQ 167 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~sa~~~~~i~~ 167 (210)
+|+.+++.+++.+..+|+.+++.... ..++|+|+||||.|.........+. ..-+...+. + ..++|||++..++.+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e 165 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE 165 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence 99999999999999999999987432 2579999999999985444332222 222222222 2 379999999999999
Q ss_pred HHHHHHHHHHcCCCcc
Q 028329 168 CFEELVLKILDTPSLL 183 (210)
Q Consensus 168 ~~~~l~~~~~~~~~~~ 183 (210)
+|-....++.-.-.-+
T Consensus 166 ~fYyaqKaVihPt~PL 181 (625)
T KOG1707|consen 166 LFYYAQKAVIHPTSPL 181 (625)
T ss_pred hhhhhhheeeccCccc
Confidence 9999887776554443
No 215
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=2.6e-17 Score=117.43 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=113.3
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCC-CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc----------cccc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN-FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE----------RFRT 77 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~ 77 (210)
-+.+...-|+++|.+|||||||||+|++.+ .+..+.++|.|.....+.+++. +.++|.||-. .+..
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence 445577899999999999999999999966 4777779999888887777665 7888999932 2223
Q ss_pred chhhccc---CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---
Q 028329 78 LTSSYYR---GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG--- 151 (210)
Q Consensus 78 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--- 151 (210)
+...+++ +-.++++++|+..+..-... ..++++.. .++|++|++||+|.......... ....+....
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~----~~i~~~vv~tK~DKi~~~~~~k~-l~~v~~~l~~~~ 168 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLE----LGIPVIVVLTKADKLKKSERNKQ-LNKVAEELKKPP 168 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHH----cCCCeEEEEEccccCChhHHHHH-HHHHHHHhcCCC
Confidence 3334443 35788999999887554333 25555554 57999999999998654333221 122222222
Q ss_pred -Cc--EEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 152 -CL--FIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 152 -~~--~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
.. ++.+|+..+.|++++...|.+.+..
T Consensus 169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 22 7889999999999999988877643
No 216
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.77 E-value=1.3e-17 Score=139.66 Aligned_cols=156 Identities=21% Similarity=0.188 Sum_probs=100.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-----CceeeeEEEEEE--ECCeE-----E-----EEEEEeCCCccc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-----TIGVDFKVKYVD--VGGKK-----L-----KLAIWDTAGQER 74 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~-----~-----~~~l~D~~g~~~ 74 (210)
.+...|+++|++++|||||+++|.+.......+ +.+.++...... ..+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 456789999999999999999998665433222 112111111100 00111 1 278999999999
Q ss_pred cccchhhcccCccEEEEEEeCCC---cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec------------
Q 028329 75 FRTLTSSYYRGAQGIIMVYDVTR---RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT------------ 139 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~------------ 139 (210)
|...+...+..+|++++|+|+++ +.+++.+. .+. ..++|+++++||+|+...+...
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~----~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILK----RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHH----HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 99888888889999999999997 44443332 222 2468999999999985221100
Q ss_pred HH-----------HHHHHHHHh---------------CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 140 KK-----------EGINFAREY---------------GCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 140 ~~-----------~~~~~~~~~---------------~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
.. +........ .++++++||.+|.|+++++..+...+
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 011111111 25689999999999999998886543
No 217
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.77 E-value=9.9e-18 Score=126.11 Aligned_cols=112 Identities=14% Similarity=0.138 Sum_probs=80.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--------------CCC---CCceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFE--------------ELS---PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 78 (210)
+|+++|++|+|||||+++|+..... ... ...+.++......+......+.+||+||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999753211 000 12223333333444455678999999999998888
Q ss_pred hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
+...++.+|++++|+|+++.... .... ++..+.. .++|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~-~~~~~~~----~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRI-LWRLLRK----LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHH-HHHHHHH----cCCCEEEEEECcccc
Confidence 88889999999999999986543 2223 4444433 468999999999985
No 218
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.76 E-value=1.9e-17 Score=139.38 Aligned_cols=156 Identities=18% Similarity=0.187 Sum_probs=102.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC---CCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccCccEEEE
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN---FEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 91 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (210)
-|.++|+.++|||||+++|++.. +.+.. ..+.|.......+ ......+.+||+||++.+.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~-~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEK-KRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcc-cCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 58899999999999999999643 22211 2233332221122 1112357899999999888777777889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee--cHHHHHHHHHHhC---CcEEEEccCCCCCH
Q 028329 92 VYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV--TKKEGINFAREYG---CLFIECSAKTRVNV 165 (210)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~sa~~~~~i 165 (210)
|+|+++...-. ..+ .+..+.. .++| ++||+||+|+...... ..+++..+....+ .+++++||++|.|+
T Consensus 81 VVda~eg~~~q-T~e-hl~il~~----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI 154 (614)
T PRK10512 81 VVACDDGVMAQ-TRE-HLAILQL----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGI 154 (614)
T ss_pred EEECCCCCcHH-HHH-HHHHHHH----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC
Confidence 99998743211 111 2222222 2344 5799999998643322 2234444444444 57999999999999
Q ss_pred HHHHHHHHHHHHc
Q 028329 166 QQCFEELVLKILD 178 (210)
Q Consensus 166 ~~~~~~l~~~~~~ 178 (210)
+++++.|......
T Consensus 155 ~~L~~~L~~~~~~ 167 (614)
T PRK10512 155 DALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999876543
No 219
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.2e-17 Score=137.63 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=118.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc------hhhc-c-cC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL------TSSY-Y-RG 85 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~-~-~~ 85 (210)
..+|+++|+||||||||.|+|++.. ......+|.|+...+.........+++.|+||--...+. .+.+ + .+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 4569999999999999999999755 345567888888777777666666889999994333321 2222 2 35
Q ss_pred ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCH
Q 028329 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNV 165 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 165 (210)
.|+++-|+|+++-+.-..+ .++.++ -+.|++++.|+.|..+++.+..+ ...+.+.+|+|+++++|++|.|+
T Consensus 82 ~D~ivnVvDAtnLeRnLyl---tlQLlE-----~g~p~ilaLNm~D~A~~~Gi~ID-~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 82 PDLIVNVVDATNLERNLYL---TLQLLE-----LGIPMILALNMIDEAKKRGIRID-IEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCEEEEEcccchHHHHHHH---HHHHHH-----cCCCeEEEeccHhhHHhcCCccc-HHHHHHHhCCCEEEEEeecCCCH
Confidence 7999999999987654443 333333 36889999999998766655443 47778889999999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 028329 166 QQCFEELVLKILDTP 180 (210)
Q Consensus 166 ~~~~~~l~~~~~~~~ 180 (210)
+++.+.+.+...++.
T Consensus 153 ~~l~~~i~~~~~~~~ 167 (653)
T COG0370 153 EELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHHhccccc
Confidence 999999987665555
No 220
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.76 E-value=5.9e-18 Score=126.23 Aligned_cols=147 Identities=20% Similarity=0.132 Sum_probs=95.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC---------------------------CCCCC---CceeeeEEEEEEECCeEEEEE
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNF---------------------------EELSP---TIGVDFKVKYVDVGGKKLKLA 65 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~---------------------------~~~~~---~~~~~~~~~~~~~~~~~~~~~ 65 (210)
+|+++|++++|||||+.+|+.... ....+ ..+.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999853211 00111 344555555555555677899
Q ss_pred EEeCCCccccccchhhcccCccEEEEEEeCCCccc------HHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC--ce
Q 028329 66 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT------FTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE--RV 137 (210)
Q Consensus 66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~ 137 (210)
+||+||+..+...+...+..+|++++|+|+++... .......+ ..... ....|+++++||+|+... ..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART---LGVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH---cCCCeEEEEEEccccccccccH
Confidence 99999988777766677788999999999998521 11122212 22221 123688999999998632 11
Q ss_pred e----cHHHHHHHHHHhC-----CcEEEEccCCCCCHH
Q 028329 138 V----TKKEGINFAREYG-----CLFIECSAKTRVNVQ 166 (210)
Q Consensus 138 ~----~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~ 166 (210)
. ..+++.......+ ++++++||++|.|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 1122222333433 569999999999987
No 221
>PRK12736 elongation factor Tu; Reviewed
Probab=99.76 E-value=4.4e-17 Score=131.35 Aligned_cols=161 Identities=17% Similarity=0.094 Sum_probs=108.6
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCC------------C---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF------------E---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (210)
....++|+++|+.++|||||+++|++... . ......+.+.......+......+.+||+||+..|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 45579999999999999999999985311 0 01114455565555566556677899999999888
Q ss_pred ccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCceec---HHHHHHHHHHhC
Q 028329 76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVT---KKEGINFAREYG 151 (210)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~---~~~~~~~~~~~~ 151 (210)
.......+..+|++++|+|+++...-.. .. ++..+.. .++| +|+++||+|+....... .+++..+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~-~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT-RE-HILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HH-HHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 7766667788999999999987532222 22 2233332 3567 67899999986332221 224445544444
Q ss_pred -----CcEEEEccCCCC--------CHHHHHHHHHHHHH
Q 028329 152 -----CLFIECSAKTRV--------NVQQCFEELVLKIL 177 (210)
Q Consensus 152 -----~~~~~~sa~~~~--------~i~~~~~~l~~~~~ 177 (210)
++++++||+++. ++.++++.+.+.+.
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 579999999983 56777777776654
No 222
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.75 E-value=2.1e-17 Score=122.83 Aligned_cols=174 Identities=19% Similarity=0.206 Sum_probs=112.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCcccccc-----chhhcccCccEE
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRT-----LTSSYYRGAQGI 89 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~d~~ 89 (210)
||+++|+.+|||||+.+.+..+..+......+.|.......+ ......+.+||+||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 799999999999999999998776655554444554444444 23456899999999864433 356678999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhh-hccCCCCcEEEEEeCCCCCCCc--ee----cHHHHHHHHHHhC---CcEEEEcc
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDL-YSTNQDCIKLLVGNKVDKESER--VV----TKKEGINFAREYG---CLFIECSA 159 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piivv~nK~D~~~~~--~~----~~~~~~~~~~~~~---~~~~~~sa 159 (210)
|||+|+...+-.+.+.. +...+.. ....++..+.|..+|+|+..+. .. ..+.+...+...+ +.++.||.
T Consensus 81 IyV~D~qs~~~~~~l~~-~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAY-LSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-STCHHHHHH-HHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEcccccHHHHHHH-HHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 99999996554444433 4444432 2336788899999999985332 11 1223334444455 67888888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcccccccCcc
Q 028329 160 KTRVNVQQCFEELVLKILDTPSLLAEGSKGLK 191 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 191 (210)
.+ ..+-+.|..+++.+..+.+.+++....+.
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP~~~~le~~L~~~~ 190 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIPNLSTLENLLNNFC 190 (232)
T ss_dssp TS-THHHHHHHHHHHTTSTTHCCCCCCCCHHH
T ss_pred cC-cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 87 58999999999999888877777665544
No 223
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.75 E-value=2.6e-17 Score=122.39 Aligned_cols=112 Identities=23% Similarity=0.281 Sum_probs=79.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------CCceeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELS------------------PTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQ 72 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~ 72 (210)
+|+++|++++|||||+++|+........ ...+.++......+ ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999865433210 01222222222221 355788999999999
Q ss_pred cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
..+.......+..+|++++|+|+.+..+.... . +..... ..+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~-~-~~~~~~----~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE-R-LIRHAI----LEGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECcccC
Confidence 98888888888999999999999887665332 2 333332 2348999999999974
No 224
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=5.6e-18 Score=115.94 Aligned_cols=158 Identities=17% Similarity=0.206 Sum_probs=119.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 92 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (210)
..=|++++|--|+|||||++.|........-||...+.....+ ....++-+|++|+...+..|..++..+|++++.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 4468999999999999999999988887777766655543333 456788899999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH----h--------C---CcEEEE
Q 028329 93 YDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE----Y--------G---CLFIEC 157 (210)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~----~--------~---~~~~~~ 157 (210)
+|+-|.+.|.+.+..+...+.. ..-..+|+++.+||+|.+....++.-........ . + ..++-|
T Consensus 95 vda~d~er~~es~~eld~ll~~-e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSD-ESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhH-HHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 9999999999998855555443 3346799999999999876543322211111111 1 1 226788
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 028329 158 SAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~ 175 (210)
|...+.+--+.|.|+.+.
T Consensus 174 si~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEccCccceeeeehhhh
Confidence 888888888888887654
No 225
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.74 E-value=5.8e-17 Score=122.21 Aligned_cols=158 Identities=18% Similarity=0.227 Sum_probs=107.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEE-EEEEEeCCCccc-------cccchhhccc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKL-KLAIWDTAGQER-------FRTLTSSYYR 84 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~D~~g~~~-------~~~~~~~~~~ 84 (210)
....|.++|.||+|||||++.|...+. ...+...+|.......++...+ .+.+-|+||.-+ +.......++
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence 345688999999999999999997764 2333333334333333333333 388889999322 2223334567
Q ss_pred CccEEEEEEeCCCc---ccHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEEcc
Q 028329 85 GAQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSA 159 (210)
Q Consensus 85 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa 159 (210)
.++.++||+|++.. +.++.+.. +..+++.|. ...+.|.++|+||+|+++. .......++..+.-+ ++++||
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA 349 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSA 349 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeee
Confidence 89999999999998 77777777 555555443 3457899999999998522 111235555655544 999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028329 160 KTRVNVQQCFEELVLK 175 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~ 175 (210)
+.++++.++++.|.+.
T Consensus 350 ~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 350 KSGEGLEELLNGLREL 365 (366)
T ss_pred ccccchHHHHHHHhhc
Confidence 9999999998877653
No 226
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.74 E-value=7.7e-17 Score=130.05 Aligned_cols=148 Identities=16% Similarity=0.096 Sum_probs=99.5
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCC-------C-----C---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDN-------F-----E---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~-------~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (210)
+....++|+++|+.++|||||+++|++.. + . ......+.+.....+.+......+.|||+||+..
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 34667999999999999999999997320 0 0 0011355566666666666667899999999988
Q ss_pred cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCCCceec---HHHHHHHHHHh
Q 028329 75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDKESERVVT---KKEGINFAREY 150 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~~~---~~~~~~~~~~~ 150 (210)
|.......+..+|++++|+|+.+....... . .+..+.. .++|.+ +++||+|+....... .+++..++...
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e-~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~ 161 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQTR-E-HILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHH-H-HHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhc
Confidence 876666667788999999999874322221 2 2222322 246654 689999986433221 23455555555
Q ss_pred C-----CcEEEEccCCCC
Q 028329 151 G-----CLFIECSAKTRV 163 (210)
Q Consensus 151 ~-----~~~~~~sa~~~~ 163 (210)
+ ++++++|+.++.
T Consensus 162 ~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 162 DFPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCCccCccEEECcccccc
Confidence 4 679999999875
No 227
>PRK12735 elongation factor Tu; Reviewed
Probab=99.74 E-value=1.2e-16 Score=128.86 Aligned_cols=161 Identities=14% Similarity=0.099 Sum_probs=107.0
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcC-------CC-----C---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSD-------NF-----E---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~-------~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (210)
.....++|+++|++++|||||+++|++. .+ . ......+.+.......+......+.|+|+||+..
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 3456799999999999999999999852 10 0 0111445555555555655666789999999988
Q ss_pred cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCCCcee---cHHHHHHHHHHh
Q 028329 75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDKESERVV---TKKEGINFAREY 150 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~~---~~~~~~~~~~~~ 150 (210)
|.......+..+|++++|+|+.+...-. ... ++..+. ..++|.+ +++||+|+...... ...++..+....
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e-~l~~~~----~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TRE-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchh-HHH-HHHHHH----HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 8776667778899999999998753221 122 223332 2356755 67999998642211 122444555444
Q ss_pred C-----CcEEEEccCCCC----------CHHHHHHHHHHHH
Q 028329 151 G-----CLFIECSAKTRV----------NVQQCFEELVLKI 176 (210)
Q Consensus 151 ~-----~~~~~~sa~~~~----------~i~~~~~~l~~~~ 176 (210)
+ ++++++|+.++. ++.++++.|...+
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 162 DFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred CCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 3 578999999984 5677777776654
No 228
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.72 E-value=1.5e-16 Score=116.77 Aligned_cols=160 Identities=19% Similarity=0.179 Sum_probs=98.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCC-CCCce---eeeEEEEEEECCeEEEEEEEeCCCccccccch-----hhccc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTIG---VDFKVKYVDVGGKKLKLAIWDTAGQERFRTLT-----SSYYR 84 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----~~~~~ 84 (210)
+++|+++|.+|+|||||+|.|++...... ..+.+ ++.....+... ....+.+||+||........ ...+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 37899999999999999999998654322 12222 11111111111 12368999999965322211 22356
Q ss_pred CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-----------ecHHHHHHHH----HH
Q 028329 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-----------VTKKEGINFA----RE 149 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-----------~~~~~~~~~~----~~ 149 (210)
.+|+++++.+ .++......|+..+... +.|+++|+||+|+..... ...++.+..+ ..
T Consensus 80 ~~d~~l~v~~----~~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 80 EYDFFIIISS----TRFSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred CcCEEEEEeC----CCCCHHHHHHHHHHHHh----CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 7899888743 23444444466666652 578999999999832211 1111222222 22
Q ss_pred hC---CcEEEEccC--CCCCHHHHHHHHHHHHHcCCCc
Q 028329 150 YG---CLFIECSAK--TRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 150 ~~---~~~~~~sa~--~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
.+ -++|-+|+. .+.++..+.+.|+..+.+.+.+
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 22 248999998 5789999999999999776544
No 229
>CHL00071 tufA elongation factor Tu
Probab=99.72 E-value=3.2e-16 Score=126.95 Aligned_cols=149 Identities=14% Similarity=0.095 Sum_probs=100.6
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCC---------------CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF---------------EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (210)
.....++|+++|++++|||||+++|++... .......+.+.......+......+.|+|+||+..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 345669999999999999999999986411 01111355555555555555566788999999988
Q ss_pred cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHHHh
Q 028329 75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---TKKEGINFAREY 150 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~---~~~~~~~~~~~~ 150 (210)
|.......+..+|++++|+|+.....- .... .+..+. ..++| +|+++||+|+...... ...++..+....
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~-~~~~~~----~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~ 161 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMP-QTKE-HILLAK----QVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKY 161 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcH-HHHH-HHHHHH----HcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 877777778899999999999865322 2222 223332 23567 7789999998643321 122444454444
Q ss_pred C-----CcEEEEccCCCCC
Q 028329 151 G-----CLFIECSAKTRVN 164 (210)
Q Consensus 151 ~-----~~~~~~sa~~~~~ 164 (210)
+ ++++.+|+.++.+
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 162 DFPGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCCCcceEEEcchhhccc
Confidence 3 5799999998864
No 230
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.71 E-value=5.1e-16 Score=115.81 Aligned_cols=152 Identities=16% Similarity=0.103 Sum_probs=94.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCC-------------ceeeeEEE--EE----------------------EEC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPT-------------IGVDFKVK--YV----------------------DVG 58 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~-------------~~~~~~~~--~~----------------------~~~ 58 (210)
||+++|+.++|||||+.+|..+.+...... .|.+.... .+ .+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999986654321110 11111000 00 011
Q ss_pred CeEEEEEEEeCCCccccccchhhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329 59 GKKLKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 136 (210)
.....+.++|+||+..+.......+. .+|++++|+|+.....-.. .. ++..+.. .++|+++|+||+|+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~-~l~~l~~----~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KE-HLGLALA----LNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HH-HHHHHHH----cCCCEEEEEECccccCHH
Confidence 12356889999999888765554443 6899999999887643221 12 3444433 457899999999985432
Q ss_pred eec--HHHHHHHHH--------------------------HhCCcEEEEccCCCCCHHHHHHHHH
Q 028329 137 VVT--KKEGINFAR--------------------------EYGCLFIECSAKTRVNVQQCFEELV 173 (210)
Q Consensus 137 ~~~--~~~~~~~~~--------------------------~~~~~~~~~sa~~~~~i~~~~~~l~ 173 (210)
... ..+...+.. ...+++|.+|+.+|.|+++++..|.
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 221 112222221 1124799999999999999887764
No 231
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.70 E-value=5.5e-16 Score=118.53 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=80.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------C---CceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS------------------P---TIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~------------------~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
-+|+++|++|+|||||+++|+...-.... + ..+.++......+......+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 46999999999999999999743211000 0 11233334444556667889999999998
Q ss_pred ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
.+.......++.+|++++|+|+++.... .... ++.... ..++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~-i~~~~~----~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRK-LFEVCR----LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHH-HHHHHH----hcCCCEEEEEECCccCCC
Confidence 8887777778999999999999875432 2222 333332 346899999999998654
No 232
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.70 E-value=1.2e-15 Score=117.23 Aligned_cols=143 Identities=17% Similarity=0.221 Sum_probs=93.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-----------CCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc----
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---- 77 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---- 77 (210)
..++|+++|.+|+|||||+++|++..+... .++...+.....+..++..+.+.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 368999999999999999999998876432 11334444455566678889999999999432211
Q ss_pred ----------------------chhhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 78 ----------------------LTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 78 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
.....+. .+|+++|+++.+... +......++..+. ..+|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~-----~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS-----KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh-----ccCCEEEEEECCCcC
Confidence 0101222 478888888877522 1111111233332 258999999999985
Q ss_pred CCc--eecHHHHHHHHHHhCCcEEEEccCC
Q 028329 134 SER--VVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 134 ~~~--~~~~~~~~~~~~~~~~~~~~~sa~~ 161 (210)
... ......+...+...++++|.+....
T Consensus 157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 157 TPEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 432 2345566777788899988876643
No 233
>COG2262 HflX GTPases [General function prediction only]
Probab=99.69 E-value=1e-15 Score=119.55 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=110.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccc---------cccchhh
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER---------FRTLTSS 81 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~ 81 (210)
.....|.++|..|+|||||+|+|++..... .......+.....+.+.+ ...+.+-||.|.-. |.++..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE- 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE- 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH-
Confidence 456899999999999999999999765432 222333333344445543 34566779999432 222222
Q ss_pred cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 161 (210)
....+|.++.|+|++++.....+.. ....+.. ....++|+|+|.||+|+..... . ........-..+.+||++
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~e-l~~~~~p~i~v~NKiD~~~~~~-~----~~~~~~~~~~~v~iSA~~ 340 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEA-VEDVLAE-IGADEIPIILVLNKIDLLEDEE-I----LAELERGSPNPVFISAKT 340 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHH-HHHHHHH-cCCCCCCEEEEEecccccCchh-h----hhhhhhcCCCeEEEEecc
Confidence 2457999999999999977666665 5666655 3345699999999999754332 1 111111111589999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCcc
Q 028329 162 RVNVQQCFEELVLKILDTPSLL 183 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~~~~~ 183 (210)
+.|++.+.+.|...+.......
T Consensus 341 ~~gl~~L~~~i~~~l~~~~~~~ 362 (411)
T COG2262 341 GEGLDLLRERIIELLSGLRTEV 362 (411)
T ss_pred CcCHHHHHHHHHHHhhhcccce
Confidence 9999999999999887555443
No 234
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.69 E-value=5.7e-16 Score=127.24 Aligned_cols=153 Identities=20% Similarity=0.156 Sum_probs=97.3
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------C--------------------CceeeeEEEEEEEC
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS------------P--------------------TIGVDFKVKYVDVG 58 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~------------~--------------------~~~~~~~~~~~~~~ 58 (210)
....++|+++|++++|||||+.+|+........ . ..+.+.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 356799999999999999999999754321110 0 12233333333444
Q ss_pred CeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028329 59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 138 (210)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~ 138 (210)
.....+.|||+||+..|.......+..+|++++|+|+.....-..... + ..+... ...|++|++||+|+......
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~-~l~~~l---g~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-S-FIATLL---GIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-H-HHHHHh---CCCceEEEEEeeccccchhH
Confidence 556688999999998887655566789999999999986532211111 1 112111 12478899999998643221
Q ss_pred cHHH----HHHHHHHh----CCcEEEEccCCCCCHHHH
Q 028329 139 TKKE----GINFAREY----GCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 139 ~~~~----~~~~~~~~----~~~~~~~sa~~~~~i~~~ 168 (210)
..++ ...+.... ..+++++||++|.|+++.
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1222 22223333 367999999999999764
No 235
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=115.89 Aligned_cols=157 Identities=20% Similarity=0.178 Sum_probs=105.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc-----cccccchh----hcc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ-----ERFRTLTS----SYY 83 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----~~~~~~~~----~~~ 83 (210)
....|+|.|.||||||||++.+++.+. +..+.+.+|-.....+++.....++++||||. ++++..-. +.-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 568999999999999999999997664 33344444444444455666678889999992 22222111 111
Q ss_pred cCccEEEEEEeCCC--cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEEccC
Q 028329 84 RGAQGIIMVYDVTR--RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC-LFIECSAK 160 (210)
Q Consensus 84 ~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~ 160 (210)
.-.++++|++|.+. .-+.+.-.. ++..++.. ...|+++|.||+|....+..... .......+. ....+++.
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~--~~~~~~~~~~~~~~~~~~ 319 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQIS-LLEEIKEL---FKAPIVVVINKIDIADEEKLEEI--EASVLEEGGEEPLKISAT 319 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHh---cCCCeEEEEecccccchhHHHHH--HHHHHhhccccccceeee
Confidence 24689999999884 456666666 55555542 34899999999998755444333 333444444 37888999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028329 161 TRVNVQQCFEELVLKI 176 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~ 176 (210)
.+.+++..-..+....
T Consensus 320 ~~~~~d~~~~~v~~~a 335 (346)
T COG1084 320 KGCGLDKLREEVRKTA 335 (346)
T ss_pred ehhhHHHHHHHHHHHh
Confidence 9998887777766653
No 236
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.68 E-value=2.2e-16 Score=121.33 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=93.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCC---C--------------ceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSP---T--------------IGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~---~--------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 78 (210)
+|+++|++|+|||||+++|+......... . .+.+.......+......+.+||+||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997533211000 0 011122222223334567899999999888777
Q ss_pred hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcE--EE
Q 028329 79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLF--IE 156 (210)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~ 156 (210)
+...+..+|++++|+|+++......... |. .+. ..++|.++++||+|+.... .......+...++.++ +.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~-~~~----~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKL-WE-FAD----EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHH-HH-HHH----HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence 8888999999999999998755433222 32 222 2468999999999986542 1122233333445543 44
Q ss_pred EccCCCCCHHHHHHHHHH
Q 028329 157 CSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 157 ~sa~~~~~i~~~~~~l~~ 174 (210)
++..++.++..+.+.+..
T Consensus 153 ip~~~~~~~~~~vd~~~~ 170 (268)
T cd04170 153 LPIGEGDDFKGVVDLLTE 170 (268)
T ss_pred ecccCCCceeEEEEcccC
Confidence 456666666555554443
No 237
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.67 E-value=7.8e-16 Score=127.56 Aligned_cols=117 Identities=16% Similarity=0.154 Sum_probs=81.3
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCC--CC----------------CC---CCceeeeEEEEEEECCeEEEEEEEeC
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF--EE----------------LS---PTIGVDFKVKYVDVGGKKLKLAIWDT 69 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~--~~----------------~~---~~~~~~~~~~~~~~~~~~~~~~l~D~ 69 (210)
.....+|+++|++++|||||+++|+...- .. .. ...+.++......+......+.+|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 34667999999999999999999963111 00 00 01233333333445555678999999
Q ss_pred CCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 70 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
||+..+.......+..+|++|+|+|+++.... .... ++... ...++|+++++||+|+.
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~-l~~~~----~~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRK-LMEVC----RLRDTPIFTFINKLDRD 144 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHH-HHHHH----HhcCCCEEEEEECCccc
Confidence 99988888777788999999999999875422 2222 33333 23578999999999974
No 238
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.67 E-value=6.5e-16 Score=124.97 Aligned_cols=148 Identities=22% Similarity=0.201 Sum_probs=94.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCC--------------------------------CCceeeeEEEEEEECCeEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELS--------------------------------PTIGVDFKVKYVDVGGKKL 62 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~ 62 (210)
++|+++|+.++|||||+.+|+........ ...+.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999999633211000 0122333333344444556
Q ss_pred EEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH--
Q 028329 63 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK-- 140 (210)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~-- 140 (210)
.+.|||+||+..|.......+..+|++++|+|+.....-..... + ..+... ...+++|++||+|+........
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~-~~~~~~---~~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-S-YIASLL---GIRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-H-HHHHHc---CCCcEEEEEEecccccchHHHHHH
Confidence 88999999998887766677889999999999986543222111 1 122211 1246889999999864322111
Q ss_pred --HHHHHHHHHhC---CcEEEEccCCCCCHHH
Q 028329 141 --KEGINFAREYG---CLFIECSAKTRVNVQQ 167 (210)
Q Consensus 141 --~~~~~~~~~~~---~~~~~~sa~~~~~i~~ 167 (210)
++...+....+ ++++++||++|.|+++
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 22223333334 4699999999999885
No 239
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.67 E-value=2.1e-15 Score=112.14 Aligned_cols=112 Identities=18% Similarity=0.229 Sum_probs=78.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCC---------------CCceeeeE--EEEEEEC--------CeEEEEEEEeCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELS---------------PTIGVDFK--VKYVDVG--------GKKLKLAIWDTA 70 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~---------------~~~~~~~~--~~~~~~~--------~~~~~~~l~D~~ 70 (210)
+|+++|+.++|||||+.+|+........ ...+.+.. ...+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999754311000 01122222 1222232 347889999999
Q ss_pred CccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 71 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
|+..+.......++.+|++++|+|+.+..+...... +.... ..++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~~~-----~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQAL-----KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHHHH-----HcCCCEEEEEECCCcc
Confidence 999999988999999999999999998765543222 22222 2357899999999975
No 240
>PRK00049 elongation factor Tu; Reviewed
Probab=99.67 E-value=3.8e-15 Score=120.19 Aligned_cols=160 Identities=14% Similarity=0.094 Sum_probs=104.9
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCC---------------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE---------------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (210)
.....++|+++|+.++|||||+++|++.... ......+.+.......+......+.++|+||+..
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 3456799999999999999999999863110 0111455556555555555566788999999988
Q ss_pred cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEE-EEEeCCCCCCCcee---cHHHHHHHHHHh
Q 028329 75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKL-LVGNKVDKESERVV---TKKEGINFAREY 150 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~~---~~~~~~~~~~~~ 150 (210)
|.......+..+|++++|+|+.....-. ... ++..+.. .++|.+ +++||+|+...... ...++..+....
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~-~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~ 161 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TRE-HILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchH-HHH-HHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence 7776777788999999999998753322 222 2333332 357865 68999998642221 112334444433
Q ss_pred -----CCcEEEEccCCCC----------CHHHHHHHHHHH
Q 028329 151 -----GCLFIECSAKTRV----------NVQQCFEELVLK 175 (210)
Q Consensus 151 -----~~~~~~~sa~~~~----------~i~~~~~~l~~~ 175 (210)
.++++.+||+++. ++..+++.|...
T Consensus 162 ~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 162 DFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred CCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 3579999999875 455666665554
No 241
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.67 E-value=7.2e-16 Score=118.04 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=78.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-----------------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFE-----------------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 78 (210)
+|+++|++++|||||+++|+..... ......+.+.......+......+.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 5899999999999999999642110 00012344444333444445678899999999888888
Q ss_pred hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
+...++.+|++++|+|+.+...-.. .. ++..+. ..++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~-~~~~~~----~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ET-VWRQAD----RYNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HH-HHHHHH----HcCCCEEEEEECCCCCC
Confidence 8888999999999999987543222 12 223332 34689999999999864
No 242
>PLN03126 Elongation factor Tu; Provisional
Probab=99.67 E-value=2.8e-15 Score=122.83 Aligned_cols=148 Identities=15% Similarity=0.087 Sum_probs=99.5
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCC------C---------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF------E---------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~------~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (210)
....++|+++|++++|||||+++|+.... . ......+.+.......+......+.++|+||+..|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 34579999999999999999999985211 0 11114455555544455555668899999999988
Q ss_pred ccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHHHh-
Q 028329 76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---TKKEGINFAREY- 150 (210)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~---~~~~~~~~~~~~- 150 (210)
.......+..+|++++|+|+.+...-.. .+ ++..+.. .++| +++++||+|+...... ..+++..+....
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e-~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQT-KE-HILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HH-HHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 8777777888999999999987643222 22 3333332 3567 7789999998643221 112344444443
Q ss_pred ----CCcEEEEccCCCCC
Q 028329 151 ----GCLFIECSAKTRVN 164 (210)
Q Consensus 151 ----~~~~~~~sa~~~~~ 164 (210)
.++++.+|+.++.+
T Consensus 232 ~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 232 FPGDDIPIISGSALLALE 249 (478)
T ss_pred CCcCcceEEEEEcccccc
Confidence 45799999988753
No 243
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.67 E-value=6e-16 Score=104.12 Aligned_cols=105 Identities=24% Similarity=0.249 Sum_probs=67.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE--EEEEECCeEEEEEEEeCCCcccc---------ccchhhccc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKV--KYVDVGGKKLKLAIWDTAGQERF---------RTLTSSYYR 84 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~~~~ 84 (210)
+|+++|.+|+|||||+|+|++..........+.+... ..+.+++.. +.++|+||...- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999986543333333333322 333445544 468999995321 111233347
Q ss_pred CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329 85 GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK 129 (210)
.+|++++|+|++++.. +.... ++..+ . ...|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~-~~~~l----~-~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKN-ILREL----K-NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHH-HHHHH----H-TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHH-HHHHH----h-cCCCEEEEEcC
Confidence 8999999999877322 12222 33333 2 57899999998
No 244
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.67 E-value=4e-15 Score=112.81 Aligned_cols=155 Identities=21% Similarity=0.116 Sum_probs=108.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc-------cccchhhcccC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-------FRTLTSSYYRG 85 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~ 85 (210)
.--+++++|.|++|||||++.|++.+. +......+|...+...+.+...++++.|+||.-. ........+++
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 457899999999999999999997654 3444455556666666677788899999998322 12345567899
Q ss_pred ccEEEEEEeCCCccc-HHHHHHHHHHHHhhhcc-----------------------------------------------
Q 028329 86 AQGIIMVYDVTRRDT-FTNLSDVWAKEIDLYST----------------------------------------------- 117 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~----------------------------------------------- 117 (210)
||.+++|+|+..... .+.+.. .++......+
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~-ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIER-ELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHH-HHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 999999999997655 333322 2221111111
Q ss_pred -----------------CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 118 -----------------NQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 118 -----------------~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
...+|.++|.||.|+.. .++...+.... .++.+||..+.|++++.+.|.+.+
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 12468899999999864 22333333322 789999999999999999988876
No 245
>PLN03127 Elongation factor Tu; Provisional
Probab=99.66 E-value=6.6e-15 Score=120.01 Aligned_cols=160 Identities=16% Similarity=0.073 Sum_probs=103.3
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcC------CC------C---CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSD------NF------E---ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~------~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (210)
...++|+++|+.++|||||+++|.+. .. . ......+.|.......+......+.|+|+||+..|.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 46799999999999999999999722 10 0 011135566666666666666788999999998877
Q ss_pred cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCceecH---HHHHHHHHHh--
Q 028329 77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVTK---KEGINFAREY-- 150 (210)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~~---~~~~~~~~~~-- 150 (210)
......+..+|++++|+|+++...-. ..+ .+..+. ..++| +|+++||+|+........ .+...+....
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~~q-t~e-~l~~~~----~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPMPQ-TKE-HILLAR----QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchh-HHH-HHHHHH----HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 66666667899999999998653222 122 222332 23577 578899999864322111 1222333322
Q ss_pred ---CCcEEEEccC---CCCC-------HHHHHHHHHHHHH
Q 028329 151 ---GCLFIECSAK---TRVN-------VQQCFEELVLKIL 177 (210)
Q Consensus 151 ---~~~~~~~sa~---~~~~-------i~~~~~~l~~~~~ 177 (210)
.++++.+|+. ++.| +.++++.+.+.+.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3568888875 4444 6777777766553
No 246
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.66 E-value=2.4e-15 Score=122.68 Aligned_cols=150 Identities=16% Similarity=0.135 Sum_probs=103.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCC---------------------------C---CCCCCceeeeEEEEEEECCeE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF---------------------------E---ELSPTIGVDFKVKYVDVGGKK 61 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~---------------------------~---~~~~~~~~~~~~~~~~~~~~~ 61 (210)
...++|+++|+.++|||||+.+|+.... . ......+.+.......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4568999999999999999998863211 0 000133445555555566677
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHH-------HHHHHHHHHHhhhccCCCC-cEEEEEeCCCCC
Q 028329 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFT-------NLSDVWAKEIDLYSTNQDC-IKLLVGNKVDKE 133 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~~-piivv~nK~D~~ 133 (210)
..+.++|+||+..|.......+..+|++|+|+|+++. .|+ .... .+.... ..++ ++||++||+|+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~e-h~~~~~----~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTRE-HALLAF----TLGVKQMICCCNKMDAT 158 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHH-HHHHHH----HcCCCcEEEEEEcccCC
Confidence 8899999999999999888889999999999999873 222 2222 222222 2345 578899999975
Q ss_pred CC-c-----eecHHHHHHHHHHhC-----CcEEEEccCCCCCHHH
Q 028329 134 SE-R-----VVTKKEGINFAREYG-----CLFIECSAKTRVNVQQ 167 (210)
Q Consensus 134 ~~-~-----~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~ 167 (210)
.. . ....+++..++...+ ++++++||.+|.|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 21 1 112345566666655 5699999999999853
No 247
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4.9e-15 Score=119.29 Aligned_cols=158 Identities=20% Similarity=0.192 Sum_probs=109.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGG-KKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
+..-|.++|+..-|||||+-.+-......... ..+..+....+..+- ....+.|+|||||+.|..+...-..-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 45678999999999999999998776543222 222233333333321 3457899999999999999888888899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---------CcEEEEccCC
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG---------CLFIECSAKT 161 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~ 161 (210)
+|+|+++.---+... .+.. ....++|++|++||+|.+... ..........++ ..++++||++
T Consensus 84 LVVa~dDGv~pQTiE-----AI~h-ak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~t 154 (509)
T COG0532 84 LVVAADDGVMPQTIE-----AINH-AKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKT 154 (509)
T ss_pred EEEEccCCcchhHHH-----HHHH-HHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence 999999853222221 1222 335789999999999987432 222233233333 3489999999
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 028329 162 RVNVQQCFEELVLKILDT 179 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~ 179 (210)
|+|+++++..++-.....
T Consensus 155 g~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 155 GEGIDELLELILLLAEVL 172 (509)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999887655433
No 248
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.65 E-value=9.7e-15 Score=107.18 Aligned_cols=161 Identities=12% Similarity=0.121 Sum_probs=96.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeE--EEEEEECCeEEEEEEEeCCCcccccc-----------chh
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFK--VKYVDVGGKKLKLAIWDTAGQERFRT-----------LTS 80 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~~ 80 (210)
++|+++|.+|||||||+|++++........ ..+.|.. .......+ ..+.++||||...... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999876543321 2222222 22223333 4688899999543221 111
Q ss_pred hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCceec------HHHHHHHHHHhCCc
Q 028329 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESERVVT------KKEGINFAREYGCL 153 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~ 153 (210)
....++|++++|+++.+ .+-.. ...+..+... ....-.++++++|+.|......+. ......+....+-.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r 155 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR 155 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe
Confidence 22457899999999887 22211 1133333321 112235788999999864332111 12334444555555
Q ss_pred EEEEc-----cCCCCCHHHHHHHHHHHHHcCC
Q 028329 154 FIECS-----AKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 154 ~~~~s-----a~~~~~i~~~~~~l~~~~~~~~ 180 (210)
++..+ +..+.++.++++.|.+.+.++.
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 55554 3457789999999999988743
No 249
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.1e-15 Score=121.51 Aligned_cols=167 Identities=20% Similarity=0.199 Sum_probs=115.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---------chhhc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---------LTSSY 82 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~ 82 (210)
...+.|+++|.||||||||+|.|...+...+.|.+|+|.......++-..+.+.|.||+|..+-.. .....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 456999999999999999999999999999999999999988888877778899999999655111 12234
Q ss_pred ccCccEEEEEEeCCCcc--cHHHHHHHHHHHHhhhcc-----CCCCcEEEEEeCCCCCCCc-eecHHHHHHHHHHhC---
Q 028329 83 YRGAQGIIMVYDVTRRD--TFTNLSDVWAKEIDLYST-----NQDCIKLLVGNKVDKESER-VVTKKEGINFAREYG--- 151 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~-----~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~--- 151 (210)
+..+|++++|+|+.... +-..+.. .+........ ....+++++.||.|+..+- ...... .-+....+
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~-~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~ 423 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIAR-ILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSV 423 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHH-HHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCcc
Confidence 66899999999994433 3222222 3333322111 1236889999999996542 221111 11111122
Q ss_pred Cc-EEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329 152 CL-FIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 152 ~~-~~~~sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
.+ ..++|+++++|++++.+.+.+.+....
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 23 566999999999999999988775443
No 250
>PRK13351 elongation factor G; Reviewed
Probab=99.64 E-value=3.3e-15 Score=128.47 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=83.3
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCC--------------CCCC---CceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE--------------ELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~--------------~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
.+...+|+++|+.++|||||+++|+..... ...+ ..+.+.......+......+.+|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 345689999999999999999999743210 0000 12223322223333456789999999999
Q ss_pred ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
.+...+...++.+|++++|+|+++..+...... |. .+. ..++|+++++||+|+..
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~-~~~----~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETV-WR-QAD----RYGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HH-HHH----hcCCCEEEEEECCCCCC
Confidence 888888889999999999999998776554433 42 222 24689999999999853
No 251
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=5.2e-15 Score=118.89 Aligned_cols=169 Identities=18% Similarity=0.204 Sum_probs=124.1
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCC--------------CCCCCceeeeEEEEEE---ECCeEEEEEEEeCCCc
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE--------------ELSPTIGVDFKVKYVD---VGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~--------------~~~~~~~~~~~~~~~~---~~~~~~~~~l~D~~g~ 72 (210)
+.++.-++.|+-+..=|||||..+|+..... +.....|.|+...... .++..+.+.++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 3456778999999999999999998643210 1112334555444332 2466699999999999
Q ss_pred cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH-HHHHHHHHhC
Q 028329 73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK-EGINFAREYG 151 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~-~~~~~~~~~~ 151 (210)
..|.......+..||++++|+|++..-.-+.+.. +...+. .+.-+|.|.||+|++..+....+ +....+....
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~an-f~lAfe-----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~ 209 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVAN-FYLAFE-----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPP 209 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHH-HHHHHH-----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999887777777 333333 35778999999999876543322 2333333344
Q ss_pred CcEEEEccCCCCCHHHHHHHHHHHHHcCCCccc
Q 028329 152 CLFIECSAKTRVNVQQCFEELVLKILDTPSLLA 184 (210)
Q Consensus 152 ~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~ 184 (210)
.+++.+||++|.+++++++.+++.+....-..+
T Consensus 210 ~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d 242 (650)
T KOG0462|consen 210 AEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRD 242 (650)
T ss_pred cceEEEEeccCccHHHHHHHHHhhCCCCCCCCC
Confidence 569999999999999999999999865554443
No 252
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.64 E-value=6.8e-15 Score=120.08 Aligned_cols=151 Identities=19% Similarity=0.138 Sum_probs=100.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCC---------------------------C---CCCCCceeeeEEEEEEECCeE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF---------------------------E---ELSPTIGVDFKVKYVDVGGKK 61 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~---------------------------~---~~~~~~~~~~~~~~~~~~~~~ 61 (210)
...++|+++|+.++|||||+.+|+.... . ......+.+.......+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4568999999999999999999874210 0 000133455555555566667
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCccc---H---HHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCC
Q 028329 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---F---TNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKES 134 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~ 134 (210)
..+.|+|+||+..|.......+..+|++++|+|+..... + ....+ .+..+. ...+| +||++||+|.+.
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~e-h~~~~~----~~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTRE-HALLAF----TLGVKQMIVCINKMDDKT 159 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHH-HHHHHH----HcCCCeEEEEEEcccccc
Confidence 889999999999988888888899999999999987531 1 12222 122222 23455 678999999532
Q ss_pred --Cc----eecHHHHHHHHHHhC-----CcEEEEccCCCCCHHH
Q 028329 135 --ER----VVTKKEGINFAREYG-----CLFIECSAKTRVNVQQ 167 (210)
Q Consensus 135 --~~----~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~ 167 (210)
.. ....+++..++...+ ++++++|+.+|.|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11 111233344444333 5699999999999864
No 253
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.64 E-value=4.4e-16 Score=111.04 Aligned_cols=119 Identities=21% Similarity=0.280 Sum_probs=74.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhc---ccCccEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSY---YRGAQGI 89 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~---~~~~d~~ 89 (210)
.-.|+++|++|+|||+|...|..+............. .+.+ ......+.++|+||+...+...... ...+.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 3578999999999999999999986544333221111 1111 2234468888999999988755554 7789999
Q ss_pred EEEEeCCC-cccHHHHHHHHHHHHhhhc-cCCCCcEEEEEeCCCCCCC
Q 028329 90 IMVYDVTR-RDTFTNLSDVWAKEIDLYS-TNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 90 i~v~d~~~-~~s~~~~~~~~~~~~~~~~-~~~~~piivv~nK~D~~~~ 135 (210)
|||+|.+. ...+..+.++++..+..-. ....+|++|+.||+|+...
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 99999874 3455666665555554322 3457899999999998643
No 254
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.63 E-value=7.9e-15 Score=124.92 Aligned_cols=152 Identities=22% Similarity=0.165 Sum_probs=96.1
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------C--------------------CceeeeEEEEEEEC
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS------------P--------------------TIGVDFKVKYVDVG 58 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~------------~--------------------~~~~~~~~~~~~~~ 58 (210)
....++|+++|++++|||||+++|+........ . ..+.+.......+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 345689999999999999999999854321110 0 11223333333344
Q ss_pred CeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028329 59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 138 (210)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~ 138 (210)
.....+.|+|+||+..+.......+..+|++++|+|+.....-.... ....+... ...+++|++||+|+......
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e--~~~~~~~~---~~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR--HSFIASLL---GIRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH--HHHHHHHh---CCCeEEEEEEecccccchhH
Confidence 45567889999999887665566678999999999997653221111 11222221 22578899999998642211
Q ss_pred cH----HHHHHHHHHhC---CcEEEEccCCCCCHHH
Q 028329 139 TK----KEGINFAREYG---CLFIECSAKTRVNVQQ 167 (210)
Q Consensus 139 ~~----~~~~~~~~~~~---~~~~~~sa~~~~~i~~ 167 (210)
.. .+...+....+ ++++++||++|.|+.+
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 11 22223334444 3599999999999874
No 255
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1.6e-14 Score=110.37 Aligned_cols=162 Identities=19% Similarity=0.167 Sum_probs=106.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCC-CCCCC--CceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhccc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNF-EELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR-------TLTSSYYR 84 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~ 84 (210)
--|.++|.||+|||||++.+..-+. ...|| |.....-.+.+ ...-.+.+=|+||.-+-. ......+.
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE 236 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIE 236 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHH
Confidence 4567999999999999999997654 23444 22233333333 233457777999932211 22334467
Q ss_pred CccEEEEEEeCCCccc---HHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEEcc
Q 028329 85 GAQGIIMVYDVTRRDT---FTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSA 159 (210)
Q Consensus 85 ~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa 159 (210)
.+.+++.|+|++..+. .+.... +..++..| ..-.+.|.+||+||+|+....+........+....+.. ++.+|+
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~-i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa 315 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQT-IRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISA 315 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHH-HHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeeh
Confidence 8999999999986553 444444 55555555 33457899999999997654444333444444444543 222999
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q 028329 160 KTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~~ 180 (210)
.++.|++++...+.+.+.+..
T Consensus 316 ~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 316 LTREGLDELLRALAELLEETK 336 (369)
T ss_pred hcccCHHHHHHHHHHHHHHhh
Confidence 999999999999999887765
No 256
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.61 E-value=1.2e-14 Score=113.42 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=42.1
Q ss_pred CCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEEccCCCCCHHHHHH-HHHHHHHcCCCcc
Q 028329 120 DCIKLLVGNKVDKESERVVTKKEGINFAREY-GCLFIECSAKTRVNVQQCFE-ELVLKILDTPSLL 183 (210)
Q Consensus 120 ~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~-~l~~~~~~~~~~~ 183 (210)
..|+++++||.|+....... ..+.... ...++.+||+.+.+++++.+ .+.+.+.+.....
T Consensus 214 ~KPvI~VlNK~Dl~~~~~~~----~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~ 275 (318)
T cd01899 214 SKPMVIAANKADIPDAENNI----SKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFE 275 (318)
T ss_pred CCcEEEEEEHHHccChHHHH----HHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCce
Confidence 46999999999975332211 1111222 45699999999999999998 5888887665443
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.60 E-value=2.6e-14 Score=116.51 Aligned_cols=163 Identities=14% Similarity=0.152 Sum_probs=102.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--Cceee----eEEE------------EE-EEC-C------------
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVD----FKVK------------YV-DVG-G------------ 59 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~----~~~~------------~~-~~~-~------------ 59 (210)
...++|.++|+...|||||+.+|++........ ..+.+ +... .+ ... +
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 346899999999999999999999653211111 11111 1000 00 000 0
Q ss_pred ---eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329 60 ---KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 60 ---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 136 (210)
....+.|+|+||+..|.......+..+|++++|+|+.+........+ .+..+.. ..-.+++|++||+|+....
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~e-hl~i~~~---lgi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSE-HLAAVEI---MKLKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHH-HHHHHHH---cCCCcEEEEEecccccCHH
Confidence 02368899999999888877777889999999999987421111122 2222221 1124689999999986432
Q ss_pred ee--cHHHHHHHHHH---hCCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 137 VV--TKKEGINFARE---YGCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 137 ~~--~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
.. ..+++..+... ...+++++||++|.|++.+++.|.+.+..
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 21 12233333322 35679999999999999999998875543
No 258
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5e-14 Score=113.34 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=113.1
Q ss_pred ccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhc
Q 028329 6 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSY 82 (210)
Q Consensus 6 ~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 82 (210)
.+..-..++.-|.++|+..=|||||+..|-+........ |.....+.+.+. +| -.++|.||||+..|..+.-.-
T Consensus 145 ~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRG 221 (683)
T KOG1145|consen 145 DPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARG 221 (683)
T ss_pred CHhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhcc
Confidence 334444578889999999999999999998776543221 344334444444 33 578899999999999999888
Q ss_pred ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---------Cc
Q 028329 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG---------CL 153 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~ 153 (210)
..-.|++++|+.+.|.---+ -.+.|.. ....++|+||++||+|.+... .+.+.......| +.
T Consensus 222 A~vtDIvVLVVAadDGVmpQ-----T~EaIkh-Ak~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQ 292 (683)
T KOG1145|consen 222 ANVTDIVVLVVAADDGVMPQ-----TLEAIKH-AKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQ 292 (683)
T ss_pred CccccEEEEEEEccCCccHh-----HHHHHHH-HHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCcee
Confidence 88899999999999863222 2233333 456789999999999987543 223333333332 44
Q ss_pred EEEEccCCCCCHHHHHHHHHHH
Q 028329 154 FIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 154 ~~~~sa~~~~~i~~~~~~l~~~ 175 (210)
++++||++|.|++.+-+.++-.
T Consensus 293 vipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 293 VIPISALTGENLDLLEEAILLL 314 (683)
T ss_pred EEEeecccCCChHHHHHHHHHH
Confidence 8999999999999988776653
No 259
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.59 E-value=4.1e-15 Score=123.33 Aligned_cols=120 Identities=16% Similarity=0.189 Sum_probs=83.6
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCC--CCC---C-------------C---CCceeeeEEEEEEECCeEEEEEEEe
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDN--FEE---L-------------S---PTIGVDFKVKYVDVGGKKLKLAIWD 68 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~--~~~---~-------------~---~~~~~~~~~~~~~~~~~~~~~~l~D 68 (210)
...+..+|+++|++++|||||+++|+... ... . . ...+.++......++.....+.+||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 34567899999999999999999985311 100 0 0 0223444444455666678899999
Q ss_pred CCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
|||+..+.......+..+|++|+|+|+++.... .... ++.... ..++|+++++||+|+...
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~-l~~~~~----~~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRK-LMEVTR----LRDTPIFTFMNKLDRDIR 147 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHH-HHHHHH----hcCCCEEEEEECccccCC
Confidence 999988877677778999999999999875221 1222 333333 246899999999998643
No 260
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=6.4e-14 Score=120.40 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=81.0
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCC--C---CC------------CCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFE--E---LS------------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~--~---~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
.++..+|+++|++++|||||+++|+..... . .. ...+.+.......+......+.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 345688999999999999999999742110 0 00 122334433333333355678999999998
Q ss_pred ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
.+...+...+..+|++++|+|+.+....... . .+..+. ..++|+++++||+|+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~-i~~~~~----~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-T-VWRQAD----KYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECCCCCC
Confidence 8777788888999999999999876433222 2 222222 34688999999999853
No 261
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.57 E-value=4.8e-14 Score=121.19 Aligned_cols=119 Identities=15% Similarity=0.120 Sum_probs=83.3
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCC------------CceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-----LSP------------TIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
.+...+|.++|++++|||||+++|+...-.. ... ..+.+.......+......+.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 3455799999999999999999997422110 000 23344444444444456789999999998
Q ss_pred ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
.+...+...++.+|++++|+|+.+........ ++..+. ..++|+++++||+|+...
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~----~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSET--VWRQAN----RYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHHH--HHHHHH----HcCCCEEEEEECCCCCCC
Confidence 88777888899999999999999865544332 222232 246899999999998754
No 262
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=3.8e-14 Score=110.87 Aligned_cols=155 Identities=19% Similarity=0.111 Sum_probs=103.1
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCC------------------------------CCCCCCceeeeEEEEEEECCe
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF------------------------------EELSPTIGVDFKVKYVDVGGK 60 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (210)
....++++++|+..+|||||+-+|+...- .......|.|+......+...
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 34579999999999999999999853210 011114466666666777778
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHH--H-HH-HHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTN--L-SD-VWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~-~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 136 (210)
.+.++++|+||+..|-......+..||+.|+|+|+++.+.... . -+ .-...+.... .--.+||++||+|+..-+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccccC
Confidence 8899999999988888877778889999999999998741110 0 00 0111111111 124568899999997633
Q ss_pred eecHHHHH----HHHHHhC-----CcEEEEccCCCCCHHH
Q 028329 137 VVTKKEGI----NFAREYG-----CLFIECSAKTRVNVQQ 167 (210)
Q Consensus 137 ~~~~~~~~----~~~~~~~-----~~~~~~sa~~~~~i~~ 167 (210)
....+++. .+.+..| ++|+++|+..|.|+.+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 33333322 2333333 5599999999998765
No 263
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=7.1e-14 Score=100.03 Aligned_cols=157 Identities=19% Similarity=0.235 Sum_probs=99.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhccc---CccEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYR---GAQGII 90 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~d~~i 90 (210)
.-.|+++|+.+||||+|...|..+.+....+..... ...+.. ....++++|.||+...+.....++. .+-++|
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn--~a~~r~--gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPN--EATYRL--GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeeccc--eeeEee--cCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 357999999999999999999987554333222211 111122 2233789999999998886666666 789999
Q ss_pred EEEeCCC-cccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCCc--eecHHH------------------------
Q 028329 91 MVYDVTR-RDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESER--VVTKKE------------------------ 142 (210)
Q Consensus 91 ~v~d~~~-~~s~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~~--~~~~~~------------------------ 142 (210)
+|+|..- ......+.+++...+-.. .....+|++++.||.|+...+ ....+.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999653 333445555444444332 135578999999999983221 110000
Q ss_pred --------HH--HHHH--HhCCcEEEEccCCCCCHHHHHHHHHHH
Q 028329 143 --------GI--NFAR--EYGCLFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 143 --------~~--~~~~--~~~~~~~~~sa~~~~~i~~~~~~l~~~ 175 (210)
+. .|.+ ...+.|.++|++.+ +++++-+||.+.
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 00 1111 12345888999988 899999998765
No 264
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.55 E-value=4e-14 Score=92.74 Aligned_cols=137 Identities=20% Similarity=0.155 Sum_probs=96.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc----hhhcccCccEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL----TSSYYRGAQGII 90 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----~~~~~~~~d~~i 90 (210)
-||.++|..|+|||||.+.|.+.... +..+...++. .. -.+|+||.-.-.+. .......+|+++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l-ykKTQAve~~-------d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL-YKKTQAVEFN-------DK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh-hcccceeecc-------Cc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 47999999999999999999976542 2223333221 11 12499984332222 333456899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEEccCCCCCHHHHH
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNVQQCF 169 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~ 169 (210)
+|-.++++++.-...- ..-...|+|-+++|.|+++. .+....+.|...-|.. +|++|+.++.|+++++
T Consensus 70 ~v~~and~~s~f~p~f---------~~~~~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~ 138 (148)
T COG4917 70 YVHAANDPESRFPPGF---------LDIGVKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELV 138 (148)
T ss_pred eeecccCccccCCccc---------ccccccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHH
Confidence 9999999976433311 12234568999999999853 4455678888888874 9999999999999999
Q ss_pred HHHHH
Q 028329 170 EELVL 174 (210)
Q Consensus 170 ~~l~~ 174 (210)
+.|..
T Consensus 139 ~~L~~ 143 (148)
T COG4917 139 DYLAS 143 (148)
T ss_pred HHHHh
Confidence 98764
No 265
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.55 E-value=1.8e-13 Score=109.89 Aligned_cols=168 Identities=21% Similarity=0.231 Sum_probs=99.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCC-CCC--CceeeeEEEEEE-------------------EC-CeEEEEEEEeCCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEE-LSP--TIGVDFKVKYVD-------------------VG-GKKLKLAIWDTAG 71 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~--~~~~~~~~~~~~-------------------~~-~~~~~~~l~D~~g 71 (210)
++|+++|.||||||||+++|++..... .++ |...+.....+. .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876532 233 111222111110 11 2346789999999
Q ss_pred cc----ccccchhh---cccCccEEEEEEeCCCc-------------c---cHHHHHHH------------HHHHHhh--
Q 028329 72 QE----RFRTLTSS---YYRGAQGIIMVYDVTRR-------------D---TFTNLSDV------------WAKEIDL-- 114 (210)
Q Consensus 72 ~~----~~~~~~~~---~~~~~d~~i~v~d~~~~-------------~---s~~~~~~~------------~~~~~~~-- 114 (210)
.. ....+-.. .++.+|++++|+|+... + .++.+... |....+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~ 161 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ 161 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 42 22223223 38899999999999721 0 01111110 0000000
Q ss_pred --------------------------hc------------------------cCCCCcEEEEEeCCCCCCCceecHHHHH
Q 028329 115 --------------------------YS------------------------TNQDCIKLLVGNKVDKESERVVTKKEGI 144 (210)
Q Consensus 115 --------------------------~~------------------------~~~~~piivv~nK~D~~~~~~~~~~~~~ 144 (210)
.. ....+|+++|+||.|...... ......
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~-~l~~i~ 240 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEE-NIERLK 240 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchH-HHHHHH
Confidence 00 012489999999999753221 112222
Q ss_pred HHHHHhCCcEEEEccCCCCCHHH-HHHHHHHHHHcCCCccccc
Q 028329 145 NFAREYGCLFIECSAKTRVNVQQ-CFEELVLKILDTPSLLAEG 186 (210)
Q Consensus 145 ~~~~~~~~~~~~~sa~~~~~i~~-~~~~l~~~~~~~~~~~~~~ 186 (210)
.+ ....++.+||+.+.++.+ +.+.+.+.+.........+
T Consensus 241 ~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d 280 (396)
T PRK09602 241 EE---KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILG 280 (396)
T ss_pred hc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccc
Confidence 22 244689999999999999 7888888777766555443
No 266
>PRK09866 hypothetical protein; Provisional
Probab=99.55 E-value=5.2e-13 Score=110.53 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=71.8
Q ss_pred EEEEEEeCCCcccc-----ccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329 62 LKLAIWDTAGQERF-----RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 62 ~~~~l~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 136 (210)
.++.|+||||.... .......+..+|++++|+|++...+.... . +...+... ....|+++|+||+|+.+..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-e-Ilk~Lkk~--~K~~PVILVVNKIDl~dre 305 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-E-VREAILAV--GQSVPLYVLVNKFDQQDRN 305 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-H-HHHHHHhc--CCCCCEEEEEEcccCCCcc
Confidence 35788999996542 22334468899999999999875433321 1 34444431 1135999999999985433
Q ss_pred eecHHHHHHHHH----HhCC---cEEEEccCCCCCHHHHHHHHHH
Q 028329 137 VVTKKEGINFAR----EYGC---LFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 137 ~~~~~~~~~~~~----~~~~---~~~~~sa~~~~~i~~~~~~l~~ 174 (210)
....+....+.. ..+. .+|++||+.|.|++++++.|..
T Consensus 306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 333444444432 2222 4999999999999998888766
No 267
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.55 E-value=1.8e-13 Score=103.87 Aligned_cols=164 Identities=19% Similarity=0.247 Sum_probs=121.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE--CCeEEEEEEEeCCCccccccchhhcccCc----c
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV--GGKKLKLAIWDTAGQERFRTLTSSYYRGA----Q 87 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~~~~~~~~----d 87 (210)
.-+|+++|+.++||||||.+|.+.. ...+..+.++....++- .....++.+|-+-|+..+..+....+... .
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 4689999999999999999999876 33344555554444432 22346788999999888888777766543 5
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccC-------------------------------------------------
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTN------------------------------------------------- 118 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------------------------------------------------- 118 (210)
.+|++.|.++++...+..+.|...+.....+
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l 209 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL 209 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence 7888999999977666666687776554221
Q ss_pred -----------CCCcEEEEEeCCCC----CCCce-------ecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 119 -----------QDCIKLLVGNKVDK----ESERV-------VTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 119 -----------~~~piivv~nK~D~----~~~~~-------~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
..+|++||.+|+|. +.+.+ .....++.|+..+|...+.+|+++..|++-+..+|..++
T Consensus 210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 36799999999998 22221 122346778888899999999999999999999999988
Q ss_pred HcC
Q 028329 177 LDT 179 (210)
Q Consensus 177 ~~~ 179 (210)
+.-
T Consensus 290 yG~ 292 (473)
T KOG3905|consen 290 YGF 292 (473)
T ss_pred cCc
Confidence 543
No 268
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=5.4e-14 Score=104.69 Aligned_cols=162 Identities=20% Similarity=0.262 Sum_probs=106.6
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEE-EEECCeEEEEEEEeCCCccc-------cccchhh
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKY-VDVGGKKLKLAIWDTAGQER-------FRTLTSS 81 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~l~D~~g~~~-------~~~~~~~ 81 (210)
...+++|+++|..|+|||||+|+|+.+...+... ..+.+..... ..+++ -.+.|||+||-.. ++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 3467999999999999999999999776655443 2222222111 12233 4589999999443 6777788
Q ss_pred cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc-------eecHHHHHHHHH------
Q 028329 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER-------VVTKKEGINFAR------ 148 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-------~~~~~~~~~~~~------ 148 (210)
.+...|.++++.+..|+.--..... |...+.. ..+.++++++|.+|...+- ......++.+..
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f-~~dVi~~---~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDF-LRDVIIL---GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHH-HHHHHHh---ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 8899999999999988753222222 4444332 2347899999999985431 111111111111
Q ss_pred --Hh--CCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 149 --EY--GCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 149 --~~--~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
.. =.+++..+.+.+-|++++...+++.+..
T Consensus 190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 11 2357888889999999999999988753
No 269
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=1.3e-13 Score=109.39 Aligned_cols=160 Identities=20% Similarity=0.220 Sum_probs=116.1
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCC--------------CCCCCCceeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNF--------------EELSPTIGVDFKVKYVDV-----GGKKLKLAIWDTAGQE 73 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~ 73 (210)
.--+..++.+-.=|||||..||..... .+.....|.|+....+.+ +|..+.++|+|||||-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 345677888899999999999863321 111113344444333322 5678999999999999
Q ss_pred ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc
Q 028329 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL 153 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 153 (210)
.|.......+..|.+.++|+|++..-.-+.+.+ ....+. .+.-++-|.||+||+....... ..++-.-.|++
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN-~YlAle-----~~LeIiPViNKIDLP~Adperv--k~eIe~~iGid 159 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLALE-----NNLEIIPVLNKIDLPAADPERV--KQEIEDIIGID 159 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHH-HHHHHH-----cCcEEEEeeecccCCCCCHHHH--HHHHHHHhCCC
Confidence 999888888999999999999999877777777 333343 3577899999999986643322 12223334553
Q ss_pred ---EEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329 154 ---FIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 154 ---~~~~sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
.+.+|||+|.||+++++.|.+.+....
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 899999999999999999999986555
No 270
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.53 E-value=4.2e-13 Score=109.24 Aligned_cols=168 Identities=17% Similarity=0.247 Sum_probs=119.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC--CeEEEEEEEeCCCccccccchhhcccCc----
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG--GKKLKLAIWDTAGQERFRTLTSSYYRGA---- 86 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~---- 86 (210)
..-.|+|+|..++|||||+.+|.+... ..++.+.+|....+.-+ ....++.+|.+.|...+..+....+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 346899999999999999999986543 23345555544443222 2346789999998888888877766632
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhhcc-------------------------------------------------
Q 028329 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYST------------------------------------------------- 117 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~------------------------------------------------- 117 (210)
-++|+|+|.+.|..+..-...|...++....
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 5789999999998766555546554433310
Q ss_pred ------------CCCCcEEEEEeCCCCC----CCc-------eecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329 118 ------------NQDCIKLLVGNKVDKE----SER-------VVTKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 118 ------------~~~~piivv~nK~D~~----~~~-------~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 174 (210)
+.++|++||.+|.|.. ... ....+..+.++..+|+.+|.+|++...+++.++.+|..
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 0147999999999962 111 12233467778888999999999999999999999999
Q ss_pred HHHcCCCc
Q 028329 175 KILDTPSL 182 (210)
Q Consensus 175 ~~~~~~~~ 182 (210)
.+....-.
T Consensus 262 ~l~~~~f~ 269 (472)
T PF05783_consen 262 RLYGFPFK 269 (472)
T ss_pred HhccCCCC
Confidence 98765543
No 271
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.50 E-value=5.7e-13 Score=102.40 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=71.3
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCc--eeeeEEEEEEECCeEEEEEEEeCCCccccccc-------hhh
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTI--GVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-------TSS 81 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~ 81 (210)
....++|+++|.+|+||||++|+|++.......... +.+........+ ...+.+|||||....... ...
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 356799999999999999999999987654333322 222222222333 467899999995543211 111
Q ss_pred cc--cCccEEEEEEeCCCcccHHHHHHHHHHHHhh-hccCCCCcEEEEEeCCCCCCC
Q 028329 82 YY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDL-YSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 82 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piivv~nK~D~~~~ 135 (210)
++ ...|+++||.+++... +.......+..+.. +....-.+.+|++|+.|...+
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 11 2589999996655321 21111112222222 112233578999999997543
No 272
>PRK12740 elongation factor G; Reviewed
Probab=99.49 E-value=2.2e-13 Score=117.00 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=73.7
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCCC--------------C---CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhc
Q 028329 20 IGDSGVGKSSLLLSFTSDNFEELS--------------P---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSY 82 (210)
Q Consensus 20 ~G~~~~GKTtli~~l~~~~~~~~~--------------~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 82 (210)
+|++++|||||+++|......... . ..+.+.......+......+.+||+||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999533211000 0 12233333333333345789999999998877777888
Q ss_pred ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
+..+|++++|+|++.......... |. .+. ..++|+++|+||+|+.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~-~~-~~~----~~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETV-WR-QAE----KYGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHH-HH-HHH----HcCCCEEEEEECCCCC
Confidence 899999999999998765543322 32 222 2468999999999975
No 273
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.49 E-value=4.4e-14 Score=104.87 Aligned_cols=178 Identities=15% Similarity=0.141 Sum_probs=104.3
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEE------EE------------------------
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKY------VD------------------------ 56 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~--~~~------~~------------------------ 56 (210)
....+++.|+++|..|||||||++||...-.....|....... +.. +.
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 3456788999999999999999999964432222211111100 000 00
Q ss_pred -----------------ECCeEEEEEEEeCCCccc-cccc-----hhhcc--cCccEEEEEEeCC---CcccHHHHHHHH
Q 028329 57 -----------------VGGKKLKLAIWDTAGQER-FRTL-----TSSYY--RGAQGIIMVYDVT---RRDTFTNLSDVW 108 (210)
Q Consensus 57 -----------------~~~~~~~~~l~D~~g~~~-~~~~-----~~~~~--~~~d~~i~v~d~~---~~~s~~~~~~~~ 108 (210)
-....+...++||||+-+ +... ....+ ...-+++||+|.. ++.+|..... +
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMl-Y 172 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNML-Y 172 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHH-H
Confidence 011234688999999643 2211 11111 2346888999954 4566666654 2
Q ss_pred HHHHhhhccCCCCcEEEEEeCCCCCCCc-----eecHHHHHHHHH---------------------HhCCcEEEEccCCC
Q 028329 109 AKEIDLYSTNQDCIKLLVGNKVDKESER-----VVTKKEGINFAR---------------------EYGCLFIECSAKTR 162 (210)
Q Consensus 109 ~~~~~~~~~~~~~piivv~nK~D~~~~~-----~~~~~~~~~~~~---------------------~~~~~~~~~sa~~~ 162 (210)
.--+.- +...|+|++.||.|+.... ..+.+..+.... -.++..+.+|+.+|
T Consensus 173 AcSily---ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 173 ACSILY---KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHHHHH---hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 222222 4679999999999985432 111111111111 01466899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcccccccCc
Q 028329 163 VNVQQCFEELVLKILDTPSLLAEGSKGL 190 (210)
Q Consensus 163 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 190 (210)
.|.+++|..+...+-+.........++.
T Consensus 250 ~G~ddf~~av~~~vdEy~~~ykp~~Ek~ 277 (366)
T KOG1532|consen 250 EGFDDFFTAVDESVDEYEEEYKPEYEKK 277 (366)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999988876665554444333
No 274
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.49 E-value=4.5e-13 Score=99.43 Aligned_cols=163 Identities=15% Similarity=0.177 Sum_probs=94.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCcccccc-------ch----h
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT-------LT----S 80 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~----~ 80 (210)
++|+++|.+||||||++|.+++........ ....+........++ ..+.++||||...... .. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999887644331 222223333345555 4578889999422111 11 1
Q ss_pred hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec-------HHHHHHHHHHhCCc
Q 028329 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT-------KKEGINFAREYGCL 153 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 153 (210)
....+.|++++|+.+... +...... +......+....-..++||.|..|......+. ......+....+-.
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~~~~~-l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEEDREV-LELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHHHHH-HHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcc-hHHHHHH-HHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 124568999999999833 3222211 22222222222334678888988864443311 12234555566777
Q ss_pred EEEEccC------CCCCHHHHHHHHHHHHHcCCC
Q 028329 154 FIECSAK------TRVNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 154 ~~~~sa~------~~~~i~~~~~~l~~~~~~~~~ 181 (210)
+..++.+ ....+.++++.+-+.+.++.-
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG 190 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 7777766 345789999999888888763
No 275
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.49 E-value=5.6e-13 Score=100.79 Aligned_cols=126 Identities=20% Similarity=0.218 Sum_probs=73.8
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---c-------
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---L------- 78 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~------- 78 (210)
+.....++|+++|.+|||||||+|+|++............+.....+........+.+|||||...... .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 345677999999999999999999999877644433222222222222222335689999999654421 1
Q ss_pred hhhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhh-hccCCCCcEEEEEeCCCCCCC
Q 028329 79 TSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDL-YSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 79 ~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piivv~nK~D~~~~ 135 (210)
...++. ..|++++|..++... +.......+..+.. +....-.++++|.||+|...+
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 112222 578888887666432 11121113333332 111223578999999998533
No 276
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.48 E-value=8.2e-13 Score=103.62 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=87.0
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCc----------ccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~piivv~nK 129 (210)
....+.+||++|+...+..|..++.+++++++|+|+++. +.+......|...+.. ....+.|++|++||
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~-~~~~~~pill~~NK 237 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS-RWFANTSIILFLNK 237 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC-ccccCCCEEEEccC
Confidence 456789999999999999999999999999999999975 4566666645554443 33467999999999
Q ss_pred CCCCCCc----------------eecHHHHHHHHHH----------hCCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329 130 VDKESER----------------VVTKKEGINFARE----------YGCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 130 ~D~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
.|+-.+. .-+.+.+..+... ..+.+..++|.+..++..+|+.+.+.++..
T Consensus 238 ~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 238 KDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred hHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 9962110 1233444444432 123367788999999999999998887654
No 277
>PRK00007 elongation factor G; Reviewed
Probab=99.48 E-value=1e-12 Score=113.04 Aligned_cols=120 Identities=15% Similarity=0.185 Sum_probs=80.7
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCC--CC---CC------------CCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF--EE---LS------------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~--~~---~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
.+.-.+|+++|++++|||||+++|+...- .. .. ...+.+.......+......+.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 45567999999999999999999973111 00 00 123334433333333345678999999988
Q ss_pred ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329 74 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 136 (210)
.+.......+..+|++++|+|+........... |. .+. ..++|.++++||+|+....
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~-~~-~~~----~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETV-WR-QAD----KYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHH-HH-HHH----HcCCCEEEEEECCCCCCCC
Confidence 776667777888999999999887644333222 32 222 2457889999999987543
No 278
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.44 E-value=5.8e-12 Score=102.28 Aligned_cols=166 Identities=24% Similarity=0.284 Sum_probs=119.4
Q ss_pred ccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCc
Q 028329 8 QQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGA 86 (210)
Q Consensus 8 ~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (210)
+......+.++++|+.++|||.|++.+.+..+...+. +....+....+...+....+.+-|.+-. ....+.... ..|
T Consensus 419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~c 496 (625)
T KOG1707|consen 419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AAC 496 (625)
T ss_pred ccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-cee
Confidence 3455678999999999999999999999988766432 4444444455555577777888888754 222222222 679
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEEccCCCCCH
Q 028329 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCL-FIECSAKTRVNV 165 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i 165 (210)
|+++++||.+++.+|..+...+..... ....|+++|++|.|+++......-...+++..++++ .+.+|.+...+
T Consensus 497 Dv~~~~YDsS~p~sf~~~a~v~~~~~~----~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s- 571 (625)
T KOG1707|consen 497 DVACLVYDSSNPRSFEYLAEVYNKYFD----LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS- 571 (625)
T ss_pred eeEEEecccCCchHHHHHHHHHHHhhh----ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-
Confidence 999999999999999988773333222 367999999999999765533222237788889986 67778775444
Q ss_pred HHHHHHHHHHHHcCC
Q 028329 166 QQCFEELVLKILDTP 180 (210)
Q Consensus 166 ~~~~~~l~~~~~~~~ 180 (210)
.++|..|..+.+-..
T Consensus 572 ~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 572 NELFIKLATMAQYPH 586 (625)
T ss_pred chHHHHHHHhhhCCC
Confidence 899999998876555
No 279
>PRK13768 GTPase; Provisional
Probab=99.44 E-value=1.3e-12 Score=99.41 Aligned_cols=115 Identities=18% Similarity=0.151 Sum_probs=71.2
Q ss_pred EEEEEeCCCcccc---ccchhhccc---C--ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 63 KLAIWDTAGQERF---RTLTSSYYR---G--AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 63 ~~~l~D~~g~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
.+.+||+||..+. +..+..+++ . .+++++|+|+....+.......+...+.... ..+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 5899999997553 333333322 2 8999999999765543333222222211111 24689999999999864
Q ss_pred CceecHH--HHH------------------------HHHHHhC--CcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 135 ERVVTKK--EGI------------------------NFAREYG--CLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 135 ~~~~~~~--~~~------------------------~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
....... ... ......+ .+++.+|++++.|+++++++|.+.+..
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 4322110 000 1112223 468999999999999999999887743
No 280
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.44 E-value=3.6e-13 Score=116.18 Aligned_cols=116 Identities=17% Similarity=0.249 Sum_probs=79.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcC---------------CCCCCCCCceeee----EEEEEEECCeEEEEEEEeCCCc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSD---------------NFEELSPTIGVDF----KVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~---------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
+...+|+++|+.++|||||+++|+.. ++.......+.+. ....+.+++..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45689999999999999999999742 1111100122222 2222335677889999999999
Q ss_pred cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
..+.......++.+|++++|+|+........... |.... ..+.|.++++||+|..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~-~~~~~-----~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETV-LRQAL-----KENVKPVLFINKVDRL 151 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHH-HHHHH-----HcCCCEEEEEEChhcc
Confidence 8888777888999999999999987533222211 22211 2356788999999985
No 281
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=8.1e-13 Score=100.26 Aligned_cols=190 Identities=15% Similarity=0.141 Sum_probs=128.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC--CceeeeE--------------------EEEEEE--C----CeEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP--TIGVDFK--------------------VKYVDV--G----GKKLK 63 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~--~~~~~~~--------------------~~~~~~--~----~~~~~ 63 (210)
.-.++|.++|+..=|||||.++|.+-.....+. ..+.++. ...-.. . .---.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 346899999999999999999997643211111 0000000 000000 0 11235
Q ss_pred EEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc--eecHH
Q 028329 64 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER--VVTKK 141 (210)
Q Consensus 64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~--~~~~~ 141 (210)
+.|.|.||++-.-+....-..-.|+.++|++++.+..-.+-.+ .+..++.. .-..++++-||.|+...+ ...++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~E-Hl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTRE-HLMALEII---GIKNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHH-HHHHHhhh---ccceEEEEecccceecHHHHHHHHH
Confidence 7888999998877777666667899999999997543333322 22223221 125688999999996443 34566
Q ss_pred HHHHHHHH---hCCcEEEEccCCCCCHHHHHHHHHHHHHcCCCcccccccCcccccccCCCCccCcc
Q 028329 142 EGINFARE---YGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKQKPPEADAA 205 (210)
Q Consensus 142 ~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (210)
+++.|.+. .+.+++++||..+.||+-+++.|.+.+........++....-...|...++.++..
T Consensus 164 qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~ 230 (415)
T COG5257 164 QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPE 230 (415)
T ss_pred HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHH
Confidence 77777664 36789999999999999999999999988888887777777777777777766543
No 282
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.42 E-value=5.8e-12 Score=99.64 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=84.7
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCc----------ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028329 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~ 130 (210)
...+.+||.+|+...+..|..++.+++++++|+|+++. ..+......|...+.. ....+.|++|++||.
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~-~~~~~~piil~~NK~ 261 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS-RWFANTSIILFLNKI 261 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC-ccccCCcEEEEEecH
Confidence 45689999999999999999999999999999999974 3566666645544443 334679999999999
Q ss_pred CCCCCc---------------eecHHHHHHHHHH----h-------CCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329 131 DKESER---------------VVTKKEGINFARE----Y-------GCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 131 D~~~~~---------------~~~~~~~~~~~~~----~-------~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
|+..+. .-+.+.+..+... . .+.++.++|.+..++..+|+.+.+.+.+.
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 973110 0123333333322 1 13357788999999999999988887654
No 283
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.41 E-value=5e-12 Score=111.18 Aligned_cols=142 Identities=18% Similarity=0.164 Sum_probs=89.4
Q ss_pred cHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECCe--------------EEEEEEEeCCCccccccchhhcccCccE
Q 028329 26 GKSSLLLSFTSDNFEELSP---TIGVDFKVKYVDVGGK--------------KLKLAIWDTAGQERFRTLTSSYYRGAQG 88 (210)
Q Consensus 26 GKTtli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (210)
+||||+.++.+...+.... |.....+......... ...+.||||||++.+..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999776543222 2222222222211000 0138999999999998877777888999
Q ss_pred EEEEEeCCCc---ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec------------HHHHHH--------
Q 028329 89 IIMVYDVTRR---DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT------------KKEGIN-------- 145 (210)
Q Consensus 89 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~------------~~~~~~-------- 145 (210)
+++|+|+++. .+++.+ ..+.. .++|+++|+||+|+...+... .+....
T Consensus 553 vlLVVDa~~Gi~~qT~e~I-----~~lk~----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAI-----NILRQ----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEECcccCCHhHHHHH-----HHHHH----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999873 333322 22222 358999999999985432210 011000
Q ss_pred H---HHH-------------h--CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 146 F---ARE-------------Y--GCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 146 ~---~~~-------------~--~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
+ ... + .++++++||++|.|+++++.+|....
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 0 111 1 35689999999999999998876543
No 284
>PTZ00258 GTP-binding protein; Provisional
Probab=99.40 E-value=7.6e-12 Score=99.69 Aligned_cols=84 Identities=21% Similarity=0.194 Sum_probs=54.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEE--EEECCe---------------EEEEEEEeCCCccc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKY--VDVGGK---------------KLKLAIWDTAGQER 74 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------~~~~~l~D~~g~~~ 74 (210)
...++|.++|.||||||||+|+|++... .....+++|..... +.+... ...+.++|+||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 5678999999999999999999987653 33223333322222 222211 23589999999432
Q ss_pred -------cccchhhcccCccEEEEEEeCC
Q 028329 75 -------FRTLTSSYYRGAQGIIMVYDVT 96 (210)
Q Consensus 75 -------~~~~~~~~~~~~d~~i~v~d~~ 96 (210)
+.......++.+|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1122334567899999999974
No 285
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.40 E-value=6.2e-12 Score=92.24 Aligned_cols=102 Identities=21% Similarity=0.118 Sum_probs=64.4
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHH
Q 028329 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKK 141 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~ 141 (210)
....++++.|..-....... -+|.++.|+|+.+.++.... +...+ ...-++++||+|+.+......+
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~~---~~~qi-------~~ad~~~~~k~d~~~~~~~~~~ 158 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPRK---GGPGI-------TRSDLLVINKIDLAPMVGADLG 158 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhhh---hHhHh-------hhccEEEEEhhhccccccccHH
Confidence 45667788774322222221 26889999999876653211 11111 1223799999999743222333
Q ss_pred HHHHHHHH--hCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 142 EGINFARE--YGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 142 ~~~~~~~~--~~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
......+. .+.+++++|+++|.|++++|+++.+.+
T Consensus 159 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 159 VMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33334443 457899999999999999999998765
No 286
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.39 E-value=5.2e-12 Score=97.05 Aligned_cols=152 Identities=22% Similarity=0.182 Sum_probs=106.5
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCC--------------------------------CCCCCCceeeeEEEEEEEC
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF--------------------------------EELSPTIGVDFKVKYVDVG 58 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~ 58 (210)
....+|++.+|...=||||||-||+...- -+.....|.|+.+....+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 45679999999999999999999964310 0001134556666666667
Q ss_pred CeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028329 59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 138 (210)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~ 138 (210)
..+-+|.+-||||+++|....-.-...||..|+++|+...-..+.-+. ..+... -.=..++|++||+||..-.+.
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRH---s~I~sL--LGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRH---SFIASL--LGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHH---HHHHHH--hCCcEEEEEEeeecccccCHH
Confidence 777889999999999999888777888999999999965432222222 222211 122578899999999765544
Q ss_pred cHH----HHHHHHHHhCC---cEEEEccCCCCCHHH
Q 028329 139 TKK----EGINFAREYGC---LFIECSAKTRVNVQQ 167 (210)
Q Consensus 139 ~~~----~~~~~~~~~~~---~~~~~sa~~~~~i~~ 167 (210)
..+ +...++..+++ .++++||..|.|+..
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 433 34556666665 399999999998754
No 287
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2.4e-11 Score=93.30 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=96.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCC----CC--CCCCceeeeEEE--EEE-------ECCeEEEEEEEeCCCcccccc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNF----EE--LSPTIGVDFKVK--YVD-------VGGKKLKLAIWDTAGQERFRT 77 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~----~~--~~~~~~~~~~~~--~~~-------~~~~~~~~~l~D~~g~~~~~~ 77 (210)
..+++.++|+..||||||.++|..-.. .. .+.+.+.+...- .+. -.+...++.++|+||+...-+
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 349999999999999999999964321 11 111222222211 111 145567899999999866555
Q ss_pred chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee---cHHHHHHHH---HHh-
Q 028329 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV---TKKEGINFA---REY- 150 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---~~~~~~~~~---~~~- 150 (210)
.......-.|..++|+|+.....-....-..+-.+. ....+||.||.|...+... ......... ...
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 555555556899999999876554444432333222 2345788899887443211 111112222 222
Q ss_pred ---CCcEEEEccCCC----CCHHHHHHHHHHHHHcCCC
Q 028329 151 ---GCLFIECSAKTR----VNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 151 ---~~~~~~~sa~~~----~~i~~~~~~l~~~~~~~~~ 181 (210)
..|++++|+..| .++.++...+..++.+.+.
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence 367999999999 4555555555555554443
No 288
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.38 E-value=1.1e-12 Score=104.85 Aligned_cols=165 Identities=17% Similarity=0.131 Sum_probs=108.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc-----cccc----hhhc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-----FRTL----TSSY 82 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----~~~~----~~~~ 82 (210)
...-.++++|.|++|||||++.++..+. +..|...+|......+++..-..++++||||.-. .... .-+.
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 3457899999999999999999986654 2333333333333345556666778889999321 1111 1112
Q ss_pred ccCccEEEEEEeCCC--cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHH--HHHHHHHhC-CcEEEE
Q 028329 83 YRGAQGIIMVYDVTR--RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKE--GINFAREYG-CLFIEC 157 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~--~~~~~~~~~-~~~~~~ 157 (210)
..--.+|+|++|++. ..|...-.. ++..++ ....+.|+|+|.||+|......++.+. ..+.....+ ++++++
T Consensus 245 AHLraaVLYfmDLSe~CGySva~Qvk-LfhsIK--pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVK-LYHSIK--PLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHH-HHHHhH--HHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 223468999999985 455555555 333343 234678999999999997766665443 333333444 889999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCC
Q 028329 158 SAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
|+.+.+|+-++-...++.++..+
T Consensus 322 S~~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred cccchhceeeHHHHHHHHHHHHH
Confidence 99999999998888877776543
No 289
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.37 E-value=5.7e-12 Score=95.37 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=75.2
Q ss_pred cccccchhhcccCccEEEEEEeCCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC
Q 028329 73 ERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYG 151 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~ 151 (210)
+.+..+.+.+++++|++++|+|++++. ++..+.. |+..+.. .++|+++|+||+|+...+....+... .....+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r-~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~-~~~~~g 97 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR-FLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLD-IYRNIG 97 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHH-HHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHH-HHHHCC
Confidence 455667777899999999999999887 7878766 7766543 57899999999999655444434443 344578
Q ss_pred CcEEEEccCCCCCHHHHHHHHHH
Q 028329 152 CLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 152 ~~~~~~sa~~~~~i~~~~~~l~~ 174 (210)
.+++++||+++.|++++|+.+..
T Consensus 98 ~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 98 YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CeEEEEecCCchhHHHHHhhhcC
Confidence 89999999999999999988753
No 290
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.37 E-value=3.1e-12 Score=86.69 Aligned_cols=115 Identities=30% Similarity=0.381 Sum_probs=78.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEe
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 94 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (210)
+||+++|+.|+|||+|+.++....+...+ +. .+.. +........+.++.+++|++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~-~~-~t~~-----------------------~~~~~~~~~~s~~~~~~v~~ 55 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVP-TV-FTIG-----------------------IDVYDPTSYESFDVVLQCWR 55 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccC-ce-ehhh-----------------------hhhccccccCCCCEEEEEEE
Confidence 48999999999999999999877664322 11 1111 22233445667899999999
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329 95 VTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 166 (210)
.++.++++.+ |...+.. ..+.++|.++++||.|+........++. ..++++|++++.++.
T Consensus 56 ~~~~~s~~~~---~~~~i~~-~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 56 VDDRDSADNK---NVPEVLV-GNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred ccCHHHHHHH---hHHHHHh-cCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 9999988765 5555554 3456789999999999854333333332 234678888888874
No 291
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.34 E-value=4.7e-11 Score=94.46 Aligned_cols=156 Identities=15% Similarity=0.170 Sum_probs=97.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcC----CCC-----------CCCCCce---eeeE-------EEEEE-ECCeEEEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSD----NFE-----------ELSPTIG---VDFK-------VKYVD-VGGKKLKLAI 66 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~----~~~-----------~~~~~~~---~~~~-------~~~~~-~~~~~~~~~l 66 (210)
..+-|.++|+.++|||||+++|.+. ... -.....| +|.. ...+. .++...++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4688999999999999999999877 322 1112333 2222 22222 2566788999
Q ss_pred EeCCCcccc-----cc--c----------------------hhhccc-CccEEEEEE-eCC----CcccHHHHHHHHHHH
Q 028329 67 WDTAGQERF-----RT--L----------------------TSSYYR-GAQGIIMVY-DVT----RRDTFTNLSDVWAKE 111 (210)
Q Consensus 67 ~D~~g~~~~-----~~--~----------------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~~ 111 (210)
+|++|...- .. . ....+. .+|+.++|. |.+ .++.+......+...
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999982110 00 0 223344 789999988 764 123455555557777
Q ss_pred HhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC--CCCCHHHHHHHHHH
Q 028329 112 IDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK--TRVNVQQCFEELVL 174 (210)
Q Consensus 112 ~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~--~~~~i~~~~~~l~~ 174 (210)
++. .++|++++.|+.|..... ..+....+...++++++.+|+. ...+|..++..++.
T Consensus 176 Lk~----~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 176 LKE----LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred HHh----cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence 664 689999999999943222 3333445556778887777764 44466666655544
No 292
>PTZ00416 elongation factor 2; Provisional
Probab=99.33 E-value=5.9e-12 Score=110.12 Aligned_cols=117 Identities=20% Similarity=0.185 Sum_probs=78.9
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---------------CceeeeEE--EEEEEC--------CeEEEEE
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---------------TIGVDFKV--KYVDVG--------GKKLKLA 65 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~---------------~~~~~~~~--~~~~~~--------~~~~~~~ 65 (210)
.+...+|+++|+.++|||||+++|+......... ..+.+... ..+.+. +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 3455699999999999999999998532111000 11222221 122222 2256789
Q ss_pred EEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 66 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
|+||||+..+.......++.+|++|+|+|+.+.-..... ..|.. +. ..++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~-~~----~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQ-AL----QERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHH-HH----HcCCCEEEEEEChhhh
Confidence 999999998888888888999999999999876433322 21332 22 2458999999999986
No 293
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.32 E-value=6.2e-12 Score=110.17 Aligned_cols=118 Identities=17% Similarity=0.197 Sum_probs=81.2
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCC------------CCCC---CceeeeE--EEEEEE--------------C
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------ELSP---TIGVDFK--VKYVDV--------------G 58 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~------------~~~~---~~~~~~~--~~~~~~--------------~ 58 (210)
+.+...+|+++|+.++|||||+.+|+..... ...+ ..+.++. ...+.+ .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 3456679999999999999999999754321 0000 1122222 112222 1
Q ss_pred CeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
+....+.++||||+..|.......++.+|++|+|+|+...-....... |.... ..++|+++++||+|+.
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~-~~~~~-----~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQAL-----GERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHH-HHHHH-----HCCCCEEEEEECCccc
Confidence 236778999999999998888888899999999999987654333222 43332 3468999999999986
No 294
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.32 E-value=3.3e-11 Score=89.15 Aligned_cols=151 Identities=16% Similarity=0.096 Sum_probs=84.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCC------------CCCCCc---eeeeEEEEEEE------------------C
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE------------ELSPTI---GVDFKVKYVDV------------------G 58 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~------------~~~~~~---~~~~~~~~~~~------------------~ 58 (210)
.....|.++|+.|+|||||++++...... ...... ........+.- .
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 45788999999999999999998643110 000000 00000000000 0
Q ss_pred CeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee
Q 028329 59 GKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 138 (210)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~ 138 (210)
.....+.++|+.|.-. .+. .+....+..+.|+|+.+.+.... . ... ....|.++++||+|+......
T Consensus 100 ~~~~d~IiIEt~G~l~-~~~--~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~-------~~~~a~iiv~NK~Dl~~~~~~ 166 (207)
T TIGR00073 100 LDDIDLLFIENVGNLV-CPA--DFDLGEHMRVVLLSVTEGDDKPL--K-YPG-------MFKEADLIVINKADLAEAVGF 166 (207)
T ss_pred cCCCCEEEEecCCCcC-CCc--ccccccCeEEEEEecCcccchhh--h-hHh-------HHhhCCEEEEEHHHccccchh
Confidence 0123566777777211 111 11122455567777765543111 1 111 123567999999999654332
Q ss_pred cHHHHHHHHHHh--CCcEEEEccCCCCCHHHHHHHHHHH
Q 028329 139 TKKEGINFAREY--GCLFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 139 ~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~ 175 (210)
............ ..+++.+|++++.|++++|+++.+.
T Consensus 167 ~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 167 DVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 233344444443 3789999999999999999999874
No 295
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.30 E-value=2.5e-11 Score=95.04 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=66.4
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee--
Q 028329 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-- 138 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-- 138 (210)
.+.+.|+||+|...-... ....+|.++++.+....+.+..... ..+. ..-++|+||+|+......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-------~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-------LADLIVINKADGDNKTAARR 214 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-------hhheEEeehhcccchhHHHH
Confidence 467899999997633322 4567999999987544444433321 1111 223899999998643321
Q ss_pred cHHHHHHHHHH-------hCCcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329 139 TKKEGINFARE-------YGCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 139 ~~~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 177 (210)
...+....... +..+++.+||+++.|++++++.+.+.+.
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11222222221 2357999999999999999999988754
No 296
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.30 E-value=9.9e-11 Score=93.10 Aligned_cols=161 Identities=18% Similarity=0.245 Sum_probs=113.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCC--CCC------------CC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDN--FEE------------LS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL 78 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~--~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 78 (210)
.-+|+++-+..=|||||+..|+.+. |.+ .- ...|.|+-...-.+......+.++||||+..|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 4579999999999999999997543 211 11 14456666666666777789999999999999999
Q ss_pred hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHH-------h
Q 028329 79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFARE-------Y 150 (210)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~-------~ 150 (210)
....+.=+|++++++|+.+..- .+.+..+.+.+. .+.+-|||+||+|.+..+. +-..++..++.. +
T Consensus 85 VERvl~MVDgvlLlVDA~EGpM-PQTrFVlkKAl~-----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALA-----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCC-CchhhhHHHHHH-----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 9999999999999999987532 111111222222 3444589999999976653 233344555544 3
Q ss_pred CCcEEEEccCCCC----------CHHHHHHHHHHHHHcCC
Q 028329 151 GCLFIECSAKTRV----------NVQQCFEELVLKILDTP 180 (210)
Q Consensus 151 ~~~~~~~sa~~~~----------~i~~~~~~l~~~~~~~~ 180 (210)
+++++..|++.|. ++.-+|+.|++.+....
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 5779999998874 67778888888775554
No 297
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=5.9e-11 Score=96.58 Aligned_cols=155 Identities=21% Similarity=0.194 Sum_probs=103.8
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcC--------------------C--C--------CCCCCCceeeeEEEEEEECC
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSD--------------------N--F--------EELSPTIGVDFKVKYVDVGG 59 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~--------------------~--~--------~~~~~~~~~~~~~~~~~~~~ 59 (210)
.....+.++++|+..+|||||+.+|+.. + | .......|.+.......++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 3346799999999999999999988521 1 1 11112556677777777778
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc---cHH---HHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFT---NLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
....++|+|+||+..|.+....-...+|+.++|+|++-.+ .|+ ..++ ....++. .. -..++|++||+|+.
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~-Lg--i~qlivaiNKmD~V 328 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRS-LG--ISQLIVAINKMDLV 328 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHH-cC--cceEEEEeeccccc
Confidence 8889999999999888888888888999999999998532 111 1111 2222222 11 34578899999984
Q ss_pred CCceecHHH----HHHHH-HHhC-----CcEEEEccCCCCCHHHH
Q 028329 134 SERVVTKKE----GINFA-REYG-----CLFIECSAKTRVNVQQC 168 (210)
Q Consensus 134 ~~~~~~~~~----~~~~~-~~~~-----~~~~~~sa~~~~~i~~~ 168 (210)
.=..-..++ ...+. ...| +.|++||+..|+|+-..
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 322222222 23333 3333 45999999999987654
No 298
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.28 E-value=9.2e-11 Score=92.56 Aligned_cols=81 Identities=21% Similarity=0.171 Sum_probs=52.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE--EEEECCe---------------EEEEEEEeCCCcccc--
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVK--YVDVGGK---------------KLKLAIWDTAGQERF-- 75 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~l~D~~g~~~~-- 75 (210)
++|.++|.||||||||+|+|++.. ......+++|.... .+.+... ...+.++|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 689999999999999999999876 33222233332211 2222221 135899999994321
Q ss_pred -----ccchhhcccCccEEEEEEeCC
Q 028329 76 -----RTLTSSYYRGAQGIIMVYDVT 96 (210)
Q Consensus 76 -----~~~~~~~~~~~d~~i~v~d~~ 96 (210)
.......++.+|++++|+|+.
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112233467899999999985
No 299
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.28 E-value=8.8e-11 Score=90.40 Aligned_cols=142 Identities=17% Similarity=0.240 Sum_probs=77.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----------CCceeeeEEEEEEECCeEEEEEEEeCCCccc-------
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-----------PTIGVDFKVKYVDVGGKKLKLAIWDTAGQER------- 74 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------- 74 (210)
-.++|+|+|.+|+|||||++.|++....... .+.........+.-++..+.+.++||||...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999976543221 1222333344455578889999999999221
Q ss_pred -----------cccchh---------hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 75 -----------FRTLTS---------SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 75 -----------~~~~~~---------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
+..... ..=..+|+++|+++.+... +..+.-.+...+. ..+++|-|+.|+|...
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLS-----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHT-----TTSEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhc-----ccccEEeEEecccccC
Confidence 110000 0012479999999987532 2222111333333 3588899999999854
Q ss_pred Ccee--cHHHHHHHHHHhCCcEEEEccC
Q 028329 135 ERVV--TKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~~~sa~ 160 (210)
..+. ..+.+.......++.+|.....
T Consensus 157 ~~el~~~k~~i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 157 PEELQAFKQRIREDLEENNIKIFDFPED 184 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTT--S------
T ss_pred HHHHHHHHHHHHHHHHHcCceeeccccc
Confidence 3322 2344555556678876664443
No 300
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.28 E-value=1.6e-10 Score=86.51 Aligned_cols=138 Identities=19% Similarity=0.233 Sum_probs=81.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
.....|+++|.+|+|||||++.+.+..... .....+. +. + .......+.++|+||.. ......+..+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~---i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-IT---V-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EE---E-EecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence 345789999999999999999998642211 1112221 11 1 11235567889999854 22234467899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEeCCCCCCCce-e--cHHHHHH-HHHH--hCCcEEEEccCCCC
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNKVDKESERV-V--TKKEGIN-FARE--YGCLFIECSAKTRV 163 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~D~~~~~~-~--~~~~~~~-~~~~--~~~~~~~~sa~~~~ 163 (210)
+|+|++........ . ++..+.. .+.|. ++|+||.|+..... . ...+... +... .+.+++.+||++.-
T Consensus 109 lviDa~~~~~~~~~-~-i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 109 LLIDASFGFEMETF-E-FLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEecCcCCCHHHH-H-HHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 99999865433221 2 3333332 34664 45999999853321 1 1112222 2211 23579999998774
No 301
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.26 E-value=4.8e-12 Score=95.16 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=58.0
Q ss_pred EEEEEeCCCccccccchhhcc--------cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 63 KLAIWDTAGQERFRTLTSSYY--------RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
.+.++||||+.++...+...- ...-++++++|.....+-......++..+.. ....+.|.|.|.||+|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~-~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSI-MLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHH-HHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHH-HhhCCCCEEEeeeccCccc
Confidence 689999999877665544432 3456889999977544322221112222211 1124799999999999975
Q ss_pred Cce---e----c------------HHHHHHHHH---HhC-C-cEEEEccCCCCCHHHHHHHHHHHH
Q 028329 135 ERV---V----T------------KKEGINFAR---EYG-C-LFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 135 ~~~---~----~------------~~~~~~~~~---~~~-~-~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
... . + ......++. ..+ + .++.+|+.+++++.+++..+-+.+
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 220 0 0 000111111 112 3 699999999999999999887654
No 302
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.26 E-value=4.7e-11 Score=94.26 Aligned_cols=161 Identities=19% Similarity=0.177 Sum_probs=82.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCC--CCC--CceeeeEEEEEEECCeEEEEEEEeCCCccccccchh-----hc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE--LSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS-----SY 82 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-----~~ 82 (210)
...++|+|+|.+|+|||||||.|.+-...+ ..+ ...+|.....+... .-..+.+||+||..-..-... .-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 357999999999999999999998643322 112 22333334434332 223589999999543222122 23
Q ss_pred ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC-------CCCceecHH----HHHHHHH---
Q 028329 83 YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK-------ESERVVTKK----EGINFAR--- 148 (210)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~-------~~~~~~~~~----~~~~~~~--- 148 (210)
+..-|.+|++.+. .|....-.+...+.. .+.|+++|-+|.|. ..++....+ +++..+.
T Consensus 112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 112 FYRYDFFIIISSE----RFTENDVQLAKEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp GGG-SEEEEEESS----S--HHHHHHHHHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCC----CCchhhHHHHHHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 5567988887763 333333324445544 46889999999996 122222222 2233222
Q ss_pred -HhCC---cEEEEccCCC--CCHHHHHHHHHHHHHcCCC
Q 028329 149 -EYGC---LFIECSAKTR--VNVQQCFEELVLKILDTPS 181 (210)
Q Consensus 149 -~~~~---~~~~~sa~~~--~~i~~~~~~l~~~~~~~~~ 181 (210)
+.++ ++|-+|+.+- .++..+.+.|.+.+...+.
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 2243 3788888654 5688888888777655443
No 303
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.24 E-value=3.6e-11 Score=97.07 Aligned_cols=173 Identities=23% Similarity=0.343 Sum_probs=128.1
Q ss_pred CCCCcccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q 028329 1 MDSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTS 80 (210)
Q Consensus 1 ~~s~~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (210)
++|+++.-.-.-..+|+.|+|..++|||+|+++++.+.|.....+.+. .+...+.+++....+.+.|.+|... .
T Consensus 17 vnsqewtlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~-~~kkE~vv~gqs~lLlirdeg~~~~-----a 90 (749)
T KOG0705|consen 17 VNSQEWTLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG-RFKKEVVVDGQSHLLLIRDEGGHPD-----A 90 (749)
T ss_pred ccccceeeecccchhheeeeecccCCceeeeeeeccceeccccCCcCc-cceeeEEeeccceEeeeecccCCch-----h
Confidence 355666555566789999999999999999999999888654433333 4455667788888888889887322 3
Q ss_pred hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC--CCCceecHHHHHHHHHH-hCCcEEEE
Q 028329 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK--ESERVVTKKEGINFARE-YGCLFIEC 157 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~--~~~~~~~~~~~~~~~~~-~~~~~~~~ 157 (210)
.+...+|++|+||.+.+.++|+.+.. +...+..+.+...+|.++++++.-. ...+.+.......++.. ..+.+|++
T Consensus 91 Qft~wvdavIfvf~~~d~~s~q~v~~-l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et 169 (749)
T KOG0705|consen 91 QFCQWVDAVVFVFSVEDEQSFQAVQA-LAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYET 169 (749)
T ss_pred hhhhhccceEEEEEeccccCHHHHHH-HHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeec
Confidence 45567999999999999999999988 4444544555778888888876433 33445554444544444 45789999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCC
Q 028329 158 SAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
.+.+|.++...|..+..++...+
T Consensus 170 ~atyGlnv~rvf~~~~~k~i~~~ 192 (749)
T KOG0705|consen 170 CATYGLNVERVFQEVAQKIVQLR 192 (749)
T ss_pred chhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998776553
No 304
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.23 E-value=6.5e-10 Score=82.04 Aligned_cols=159 Identities=16% Similarity=0.085 Sum_probs=100.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccc-------ccchhhcccC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-------RTLTSSYYRG 85 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~ 85 (210)
.--||+++|.|.+|||||+..++..... ......++.......+......+++.|+||.-+- ........+.
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 3479999999999999999999865542 2222333444444444444556788899993221 2234456778
Q ss_pred ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC------CCceecHHHHHHHHHHhCCcEEEEcc
Q 028329 86 AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE------SERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
+|.+++|.|++..+.-..+.+.-++.+....++.+..+.+--.|.... ..-..+...+..+.+++.+.-.++=.
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 999999999998876666655566777776777766665554444431 11233445556666666655444444
Q ss_pred CCCCCHHHHHHHH
Q 028329 160 KTRVNVQQCFEEL 172 (210)
Q Consensus 160 ~~~~~i~~~~~~l 172 (210)
++...++++.+.+
T Consensus 220 ReD~t~DdfIDvi 232 (364)
T KOG1486|consen 220 REDCTVDDFIDVI 232 (364)
T ss_pred ecCCChHHHHHHH
Confidence 5556666655544
No 305
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.22 E-value=8.2e-11 Score=101.95 Aligned_cols=117 Identities=20% Similarity=0.202 Sum_probs=78.1
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------C---CceeeeEE----EEEEECCeEEEEEEEeCCC
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS------------P---TIGVDFKV----KYVDVGGKKLKLAIWDTAG 71 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~------------~---~~~~~~~~----~~~~~~~~~~~~~l~D~~g 71 (210)
.++..+|+++|+.++|||||+.+|+........ + ..+.++.. ..+..++....+.|+||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 345568999999999999999999753211000 0 11112211 1223345578899999999
Q ss_pred ccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 72 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
+..+.......++.+|++++|+|+......... ..|..... .+.|.++++||+|+.
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~-----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALR-----ERVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHH-----cCCCeEEEEECchhh
Confidence 998888888888999999999998876433222 21333222 245779999999975
No 306
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.21 E-value=9.8e-11 Score=83.73 Aligned_cols=63 Identities=24% Similarity=0.308 Sum_probs=42.3
Q ss_pred EEEEEeCCCccc----cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028329 63 KLAIWDTAGQER----FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130 (210)
Q Consensus 63 ~~~l~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~ 130 (210)
.+.|+|+||... ....+..++..+|++++|.+++...+-..... +...... ....+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTT----TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcC----CCCeEEEEEcCC
Confidence 478999999533 23456777899999999999998655443333 4444433 333478888984
No 307
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=9e-11 Score=92.66 Aligned_cols=122 Identities=19% Similarity=0.214 Sum_probs=88.5
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhc--C-------------------CCCCCCCCceeeeEEEEEEECCeEEEEEEE
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTS--D-------------------NFEELSPTIGVDFKVKYVDVGGKKLKLAIW 67 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~--~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 67 (210)
+...+.-..+|+-+|.+|||||-..|+- + +|.......|..+....+++++....+.|.
T Consensus 7 ~Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLL 86 (528)
T COG4108 7 QEVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLL 86 (528)
T ss_pred HHHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEecc
Confidence 3455677889999999999999988741 1 111111123455556666777788889999
Q ss_pred eCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329 68 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 136 (210)
||||++.+..-....+..+|..|+|+|+...-.-...+ +.+..+ ..++||+-++||.|.+...
T Consensus 87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K--LfeVcr----lR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK--LFEVCR----LRDIPIFTFINKLDREGRD 149 (528)
T ss_pred CCCCccccchhHHHHHHhhheeeEEEecccCccHHHHH--HHHHHh----hcCCceEEEeeccccccCC
Confidence 99999999998888899999999999998754322222 344443 4689999999999975443
No 308
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.20 E-value=5.3e-10 Score=87.32 Aligned_cols=127 Identities=20% Similarity=0.173 Sum_probs=86.4
Q ss_pred EEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc----------cHHHHHHHHHHHHhhhccCCCC
Q 028329 52 VKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD----------TFTNLSDVWAKEIDLYSTNQDC 121 (210)
Q Consensus 52 ~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~ 121 (210)
...+.+......+.++|.+|+..-+..|..++.+++++++|+++++.+ ...+... +...+-......+.
T Consensus 185 I~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~-LF~sI~n~~~F~~t 263 (354)
T KOG0082|consen 185 IVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLK-LFESICNNKWFANT 263 (354)
T ss_pred eeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHH-HHHHHhcCcccccC
Confidence 344444445577899999999999999999999999999999998643 2333444 33333333445689
Q ss_pred cEEEEEeCCCCCCCc--------------e-ecHHHHHHHHHH--------h--CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 122 IKLLVGNKVDKESER--------------V-VTKKEGINFARE--------Y--GCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 122 piivv~nK~D~~~~~--------------~-~~~~~~~~~~~~--------~--~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
++|++.||.|+-.+. . -..+++..+... . .+-+..+.|.+..+|+.+|+.+.+.+
T Consensus 264 siiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~I 343 (354)
T KOG0082|consen 264 SIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTI 343 (354)
T ss_pred cEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHH
Confidence 999999999982211 1 122333333321 1 22356678899999999999999888
Q ss_pred HcC
Q 028329 177 LDT 179 (210)
Q Consensus 177 ~~~ 179 (210)
.+.
T Consensus 344 i~~ 346 (354)
T KOG0082|consen 344 IQN 346 (354)
T ss_pred HHH
Confidence 654
No 309
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.19 E-value=1.9e-10 Score=89.73 Aligned_cols=103 Identities=17% Similarity=0.101 Sum_probs=63.4
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecH
Q 028329 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK 140 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~ 140 (210)
.+.+.|+||+|..... ...+..+|.++++.+.. +...+.. +...+ .++|.++++||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~-~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQG-IKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHH-HHHHH------hhhccEEEEEcccccchhHHHH
Confidence 4678999999854222 23456688888885543 3333333 22212 2467799999999864432110
Q ss_pred --HH----HHHHHH---HhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 141 --KE----GINFAR---EYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 141 --~~----~~~~~~---~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
.. ...+.. .+..+++.+||+++.|++++++++.+..
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 00 011111 1234689999999999999999998864
No 310
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=2.2e-10 Score=95.53 Aligned_cols=162 Identities=19% Similarity=0.144 Sum_probs=102.5
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----CCceeeeEEEE--------EEEC----CeEEEEEEEeCCCccc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-----PTIGVDFKVKY--------VDVG----GKKLKLAIWDTAGQER 74 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-----~~~~~~~~~~~--------~~~~----~~~~~~~l~D~~g~~~ 74 (210)
-+..-|+|+|+..+|||-|+..+.+....... ..+|.|+.... +.-+ ..-..+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 35577899999999999999998864432111 12233332211 0000 1112477889999999
Q ss_pred cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCcee----------------
Q 028329 75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV---------------- 138 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~---------------- 138 (210)
|..+.......||.+|+|+|+.+.-.-..+.. +.+++ ..+.|+||+.||+|..-.+..
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiES--i~lLR----~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIES--INLLR----MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHH--HHHHH----hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 99999999999999999999986522222221 22233 357999999999997311100
Q ss_pred -cHH------H-HHHHHH-Hh-------------CCcEEEEccCCCCCHHHHHHHHHHHHHcC
Q 028329 139 -TKK------E-GINFAR-EY-------------GCLFIECSAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 139 -~~~------~-~~~~~~-~~-------------~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
..+ . +.+|+. .+ -+.++++||..|+||.+++-+|++.....
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 000 0 011110 00 13479999999999999999999876543
No 311
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.16 E-value=4.3e-10 Score=93.83 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=71.5
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeE-EEEEEECCeEEEEEEEeCCCccccc-------cc--
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFK-VKYVDVGGKKLKLAIWDTAGQERFR-------TL-- 78 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~-------~~-- 78 (210)
+.+..++|+++|.+|+||||++|+|++........ ..+++.. ......++ ..+.++||||..... ..
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk 191 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILS 191 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHH
Confidence 33566899999999999999999999876443332 2222221 22223333 568899999954321 11
Q ss_pred -hhhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHh-hhccCCCCcEEEEEeCCCCCC
Q 028329 79 -TSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEID-LYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 79 -~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~piivv~nK~D~~~ 134 (210)
...++. .+|++++|..++.......-.. ++..+. .+....-..+|||.|+.|...
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~-aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLP-LLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHH-HHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 111223 4799999998764333211111 222222 112223356789999999754
No 312
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.15 E-value=5.5e-10 Score=79.59 Aligned_cols=149 Identities=18% Similarity=0.094 Sum_probs=88.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeE-------------EEEEEE----------------------
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFK-------------VKYVDV---------------------- 57 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~-------------~~~~~~---------------------- 57 (210)
.++|.+.|++|||||+|+.+++..-..++.. -...+.+ ...+.+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 5899999999999999998876432111110 0000000 000000
Q ss_pred CCeEEEEEEEeCCCccccccchhhcccCcc-EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329 58 GGKKLKLAIWDTAGQERFRTLTSSYYRGAQ-GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 58 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 136 (210)
......+.|++..|+ --.+. .+.-.| .-|+|+|.+..+-...-- +..-. ..-++|+||.|+...-
T Consensus 93 ~~~~~Dll~iEs~GN-L~~~~---sp~L~d~~~v~VidvteGe~~P~K~---------gP~i~-~aDllVInK~DLa~~v 158 (202)
T COG0378 93 DFPDLDLLFIESVGN-LVCPF---SPDLGDHLRVVVIDVTEGEDIPRKG---------GPGIF-KADLLVINKTDLAPYV 158 (202)
T ss_pred cCCcCCEEEEecCcc-eeccc---CcchhhceEEEEEECCCCCCCcccC---------CCcee-EeeEEEEehHHhHHHh
Confidence 111135666676662 11111 122244 788999988765321110 00001 1348999999998776
Q ss_pred eecHHHHHHHHHHh--CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 137 VVTKKEGINFAREY--GCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 137 ~~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
..+.+....-++.. ..+++++|+++|.|++++++|+....
T Consensus 159 ~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 159 GADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 66666666666655 46899999999999999999987654
No 313
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=4.4e-10 Score=95.65 Aligned_cols=118 Identities=16% Similarity=0.188 Sum_probs=87.6
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCC-----------------CCCCCCceeeeEEEEEEECCe-EEEEEEEeCCCc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNF-----------------EELSPTIGVDFKVKYVDVGGK-KLKLAIWDTAGQ 72 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~ 72 (210)
.+...+|.++|+..+|||||..+|+...- .+.....|.|+.......... ...++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 56778999999999999999999863321 111113355665555555445 589999999999
Q ss_pred cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
-.|.......++-+|++++|+|+...-....-.- |.... +.++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv-~rqa~-----~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETV-WRQAD-----KYGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHH-HHHHh-----hcCCCeEEEEECccccc
Confidence 9999999999999999999999987644332222 54443 35799999999999743
No 314
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.12 E-value=7.8e-11 Score=87.84 Aligned_cols=149 Identities=16% Similarity=0.188 Sum_probs=85.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCC-----------CCCCC----------------CceeeeEEEEEEECC------
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNF-----------EELSP----------------TIGVDFKVKYVDVGG------ 59 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~-----------~~~~~----------------~~~~~~~~~~~~~~~------ 59 (210)
..+.|.|.|+||+|||||+..|...-. .+.+| ......+...+.-.+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 568999999999999999998842100 00001 011223344433222
Q ss_pred ------------eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEE
Q 028329 60 ------------KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127 (210)
Q Consensus 60 ------------~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~ 127 (210)
..+.+.|++|.|..+-.. ....-+|.+++|.-..-.+..+.++. -+..+ .-++|+
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~Ka-GimEi---------aDi~vV 174 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKA-GIMEI---------ADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-T-THHHH----------SEEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhh-hhhhh---------ccEEEE
Confidence 235678888877443332 23445899999999887777666655 22222 238999
Q ss_pred eCCCCCCCceecHHHHHHHHHH-------hCCcEEEEccCCCCCHHHHHHHHHHH
Q 028329 128 NKVDKESERVVTKKEGINFARE-------YGCLFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 128 nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~ 175 (210)
||.|.+..... ..+....... +..+++.+||.++.|++++++.|.+.
T Consensus 175 NKaD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 175 NKADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp E--SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred eCCChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 99996433222 1222222221 23579999999999999999998774
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.11 E-value=1.5e-09 Score=81.53 Aligned_cols=69 Identities=22% Similarity=0.215 Sum_probs=43.2
Q ss_pred EEEEEEeCCCccc-------------cccchhhccc-CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEE
Q 028329 62 LKLAIWDTAGQER-------------FRTLTSSYYR-GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127 (210)
Q Consensus 62 ~~~~l~D~~g~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~ 127 (210)
..+.++|+||... ...+...+++ ..+++++|+|++..-.-..... +...+. ....++++|+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~-ia~~ld----~~~~rti~Vi 199 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK-LAKEVD----PQGERTIGVI 199 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH-HHHHHH----HcCCcEEEEE
Confidence 4689999999632 1123444566 4469999999876433222222 333333 3568899999
Q ss_pred eCCCCCCC
Q 028329 128 NKVDKESE 135 (210)
Q Consensus 128 nK~D~~~~ 135 (210)
||.|...+
T Consensus 200 TK~D~~~~ 207 (240)
T smart00053 200 TKLDLMDE 207 (240)
T ss_pred ECCCCCCc
Confidence 99998643
No 316
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=4.5e-10 Score=82.37 Aligned_cols=176 Identities=17% Similarity=0.176 Sum_probs=111.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcccccc---chhhcccCccEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT---LTSSYYRGAQGII 90 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~~i 90 (210)
..+|+++|...+||||+-+.......+........|.....-++.+.-+.+.+||+||+..+-. -....++++.+++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 3679999999999999988887666554433333333333334455567899999999765432 2344678999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc-eecH-HHHH----HHHHHh---CC--cEEEEcc
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER-VVTK-KEGI----NFAREY---GC--LFIECSA 159 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~-~~~~-~~~~----~~~~~~---~~--~~~~~sa 159 (210)
+|+|+.+. -.+.+.......-+.+.-++++.+=|.++|.|...+. .+.. ..+. ...... ++ .++-+|.
T Consensus 107 fvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 99999864 3344444233334555667889999999999974322 1111 1111 111222 22 3454444
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcccccccCcc
Q 028329 160 KTRVNVQQCFEELVLKILDTPSLLAEGSKGLK 191 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 191 (210)
...+|-+.|..+.+.+...-+.++.....+.
T Consensus 186 -yDHSIfEAFSkvVQkLipqLptLEnlLnif~ 216 (347)
T KOG3887|consen 186 -YDHSIFEAFSKVVQKLIPQLPTLENLLNIFI 216 (347)
T ss_pred -cchHHHHHHHHHHHHHhhhchhHHHHHHHHh
Confidence 4566888899999988877766655444333
No 317
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.10 E-value=1.7e-10 Score=83.91 Aligned_cols=168 Identities=22% Similarity=0.341 Sum_probs=95.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC-CeEEEEEEEeCCCccccc-----cchhhcccCc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVG-GKKLKLAIWDTAGQERFR-----TLTSSYYRGA 86 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~-----~~~~~~~~~~ 86 (210)
..-||+++|.+|+|||++-..+..+..+......|.++...-.++. -....+.+||.+|++.+- ......+.++
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 3568999999999999987666655433333333433333322221 124678999999987432 2344568899
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhh-ccCCCCcEEEEEeCCCCCCC--ceecHHH----HHHHHHHhCCcEEEEcc
Q 028329 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLY-STNQDCIKLLVGNKVDKESE--RVVTKKE----GINFAREYGCLFIECSA 159 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piivv~nK~D~~~~--~~~~~~~----~~~~~~~~~~~~~~~sa 159 (210)
+++++|||++..+-...+.. +..-++.. ...++.-+....+|+|+... +....+. .+.+....++.++.+|.
T Consensus 83 ~vli~vFDves~e~~~D~~~-yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHY-YQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHH-HHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999998764444433 44433222 22455667788899999533 2222222 22222223445666665
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCc
Q 028329 160 KTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
-+. .+-..+..+...+..+.+.
T Consensus 162 wDe-tl~KAWS~iv~~lipn~~~ 183 (295)
T KOG3886|consen 162 WDE-TLYKAWSSIVYNLIPNVSA 183 (295)
T ss_pred hhH-HHHHHHHHHHHhhCCChHH
Confidence 432 2223344444444444433
No 318
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=3.3e-09 Score=82.94 Aligned_cols=84 Identities=26% Similarity=0.247 Sum_probs=57.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCC-CCCCC--CceeeeEEEEEEE----------C----CeEEEEEEEeCCCc----
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNF-EELSP--TIGVDFKVKYVDV----------G----GKKLKLAIWDTAGQ---- 72 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~-~~~~~--~~~~~~~~~~~~~----------~----~~~~~~~l~D~~g~---- 72 (210)
.+++.++|.||||||||.|.++...- ..+|| |.........+.. . .....+.++|.+|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999998773 24566 3333333222211 1 12357899999882
Q ss_pred ---cccccchhhcccCccEEEEEEeCCC
Q 028329 73 ---ERFRTLTSSYYRGAQGIIMVYDVTR 97 (210)
Q Consensus 73 ---~~~~~~~~~~~~~~d~~i~v~d~~~ 97 (210)
+.+......-++.+|+++.|+|+..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 3333345556789999999999873
No 319
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.08 E-value=1.9e-09 Score=81.66 Aligned_cols=151 Identities=15% Similarity=0.192 Sum_probs=91.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCC-----------CCCCCC-Cc---------------eeeeEEEEEEE--------
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDN-----------FEELSP-TI---------------GVDFKVKYVDV-------- 57 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~-----------~~~~~~-~~---------------~~~~~~~~~~~-------- 57 (210)
+...|.|.|.||+|||||+..|...- ..+.+| +- ....+...+..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 45799999999999999998874210 001111 11 11122222221
Q ss_pred ----------CCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEE
Q 028329 58 ----------GGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127 (210)
Q Consensus 58 ----------~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~ 127 (210)
+...+.+.|++|.|..+-.. ....-+|.+++|.-..-.+..+.++. -...+. -++|+
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~-GimEia---------Di~vI 196 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKA-GIMEIA---------DIIVI 196 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHh-hhhhhh---------heeeE
Confidence 22335688889988544332 23345899999998887777666655 223332 37999
Q ss_pred eCCCCCCCceecH--HHHHHHH------HHhCCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 128 NKVDKESERVVTK--KEGINFA------REYGCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 128 nK~D~~~~~~~~~--~~~~~~~------~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
||.|......... ..+.... ..+.-+++.+||.++.|++++++.+.+..
T Consensus 197 NKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 197 NKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred eccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 9999643221111 1111111 12345699999999999999999998765
No 320
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=4.4e-09 Score=83.47 Aligned_cols=156 Identities=16% Similarity=0.122 Sum_probs=108.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCC--CCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEE
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELS--PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 93 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (210)
-|...|+-.-|||||+..+++....... ...|++....-+........+.|+|.||++.+-......+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4677899999999999999977643222 24555555555555555568999999999998888888888999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH---hCCcEEEEccCCCCCHHHHHH
Q 028329 94 DVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFARE---YGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~ 170 (210)
|+++.-..+... .+..++. ..-...++|+||+|+.+...+ .+...++... ...+++.+|+++|.||+++.+
T Consensus 82 ~~deGl~~qtgE--hL~iLdl---lgi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 82 AADEGLMAQTGE--HLLILDL---LGIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred eCccCcchhhHH--HHHHHHh---cCCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 997543322222 1222222 122345899999998755422 1222333332 245689999999999999999
Q ss_pred HHHHHHH
Q 028329 171 ELVLKIL 177 (210)
Q Consensus 171 ~l~~~~~ 177 (210)
.|.+..-
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9998873
No 321
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.05 E-value=4.3e-09 Score=85.15 Aligned_cols=116 Identities=15% Similarity=0.151 Sum_probs=80.8
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCc----------ccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~piivv~nK 129 (210)
....+.++|++|+...+..|..++.+++++|||+++++. ..+......|...+.. ....+.|++|+.||
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~-~~~~~~~iil~lnK 312 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN-PWFKNTPIILFLNK 312 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS-GGGTTSEEEEEEE-
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC-cccccCceEEeeec
Confidence 445788999999999999999999999999999998753 2355555644444443 44458999999999
Q ss_pred CCCC------CC-----------c-eecHHHHHHHHHHh------------CCcEEEEccCCCCCHHHHHHHHHHHH
Q 028329 130 VDKE------SE-----------R-VVTKKEGINFAREY------------GCLFIECSAKTRVNVQQCFEELVLKI 176 (210)
Q Consensus 130 ~D~~------~~-----------~-~~~~~~~~~~~~~~------------~~~~~~~sa~~~~~i~~~~~~l~~~~ 176 (210)
.|+- .. . .-+.+.+..+.... .+.+..++|.+..++..+|+.+.+.+
T Consensus 313 ~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 313 IDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9971 00 0 02334445444331 12356788998899999999887653
No 322
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2.3e-09 Score=83.21 Aligned_cols=130 Identities=18% Similarity=0.274 Sum_probs=86.2
Q ss_pred CCCcccccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC--CCceeeeEEEEEEECCeEE-----------------
Q 028329 2 DSSSASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELS--PTIGVDFKVKYVDVGGKKL----------------- 62 (210)
Q Consensus 2 ~s~~~~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----------------- 62 (210)
+|+.-.....+....|+++|.-+.||||||+.|+.++++... +.+.+++....+..+....
T Consensus 46 ~sp~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL 125 (532)
T KOG1954|consen 46 HSPALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGL 125 (532)
T ss_pred ccccccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhh
Confidence 566666677788899999999999999999999999986433 3555555555554322111
Q ss_pred ----------------------EEEEEeCCCcc-----------ccccchhhcccCccEEEEEEeCCCcccHHHHHHHHH
Q 028329 63 ----------------------KLAIWDTAGQE-----------RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWA 109 (210)
Q Consensus 63 ----------------------~~~l~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 109 (210)
.+.++|+||.- .+.....-++..+|.++++||+..-+--.+... .+
T Consensus 126 ~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~-vi 204 (532)
T KOG1954|consen 126 NKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKR-VI 204 (532)
T ss_pred hhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHH-HH
Confidence 58999999932 122234446778999999999775443223322 22
Q ss_pred HHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329 110 KEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 110 ~~~~~~~~~~~~piivv~nK~D~~~~~ 136 (210)
..++ ..+--+-||.||.|..+..
T Consensus 205 ~aLk----G~EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 205 DALK----GHEDKIRVVLNKADQVDTQ 227 (532)
T ss_pred HHhh----CCcceeEEEeccccccCHH
Confidence 3332 2233457999999986443
No 323
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2.3e-09 Score=88.73 Aligned_cols=117 Identities=23% Similarity=0.302 Sum_probs=85.4
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC----------------CceeeeEEEEEE-----ECCeEEEEEEEe
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP----------------TIGVDFKVKYVD-----VGGKKLKLAIWD 68 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~----------------~~~~~~~~~~~~-----~~~~~~~~~l~D 68 (210)
......+|.++|+-+.|||+|+..|.....+..+. ..+..+.....+ ..+..+-+++.|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 34567899999999999999999998665543322 112222222222 256678899999
Q ss_pred CCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329 69 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 132 (210)
|||+..+....-..++.+|++++|+|+.+.-.+..-+- ++. .-....|+++|+||.|.
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-----ikh-aiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-----IKH-AIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-----HHH-HHhccCcEEEEEehhHH
Confidence 99999999999999999999999999988766543322 222 22346899999999996
No 324
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.01 E-value=1.6e-09 Score=82.91 Aligned_cols=56 Identities=25% Similarity=0.143 Sum_probs=40.9
Q ss_pred CCcEEEEEeCCCCCCCceecHHHHHHHHHHh--CCcEEEEccCCCCCHHHHHHHHHHH
Q 028329 120 DCIKLLVGNKVDKESERVVTKKEGINFAREY--GCLFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 120 ~~piivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~ 175 (210)
..+-++|+||+|+......+.+......+.. ..+++.+|++++.|++++++||...
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3566899999999653333333444444443 4679999999999999999999774
No 325
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.00 E-value=4.2e-10 Score=85.83 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=93.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCC-CCCC--CceeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccch
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFE-ELSP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQE---------RFRTLT 79 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~ 79 (210)
....-|.++|..|+|||||++.|+.-... ...- |...|.....+. ++ -.+.+.||.|.- .|++..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp-sg--~~vlltDTvGFisdLP~~LvaAF~ATL 252 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP-SG--NFVLLTDTVGFISDLPIQLVAAFQATL 252 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC-CC--cEEEEeechhhhhhCcHHHHHHHHHHH
Confidence 34567899999999999999999944322 2211 333333333222 22 235566999842 222222
Q ss_pred hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc----EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEE
Q 028329 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI----KLLVGNKVDKESERVVTKKEGINFAREYGCLFI 155 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p----iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
. ....+|.++.|.|+++|+...+... .+..+... .-++.| ++=|=||.|......... ..+ .+
T Consensus 253 e-eVaeadlllHvvDiShP~ae~q~e~-Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~~e~E--------~n~--~v 319 (410)
T KOG0410|consen 253 E-EVAEADLLLHVVDISHPNAEEQRET-VLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDEVEEE--------KNL--DV 319 (410)
T ss_pred H-HHhhcceEEEEeecCCccHHHHHHH-HHHHHHhc-CCCcHHHHhHHHhhccccccccccCccc--------cCC--cc
Confidence 2 2456999999999999987666555 55555432 112222 344558888643322111 112 47
Q ss_pred EEccCCCCCHHHHHHHHHHHHHcCC
Q 028329 156 ECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 156 ~~sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
.+|+++|.|++++.+.+-..+....
T Consensus 320 ~isaltgdgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 320 GISALTGDGLEELLKAEETKVASET 344 (410)
T ss_pred ccccccCccHHHHHHHHHHHhhhhh
Confidence 8999999999999999888775443
No 326
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.99 E-value=3.5e-09 Score=77.33 Aligned_cols=99 Identities=19% Similarity=0.098 Sum_probs=67.6
Q ss_pred cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HH
Q 028329 75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA-----RE 149 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~ 149 (210)
+...+..+++.+|++++|+|+++.... |...+.. ...+.|+++|+||+|+..... ..+....+. ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRL--FGGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHH--hcCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhh
Confidence 567788889999999999999876421 2222211 124689999999999864332 222233332 22
Q ss_pred hCC---cEEEEccCCCCCHHHHHHHHHHHHHcCCCc
Q 028329 150 YGC---LFIECSAKTRVNVQQCFEELVLKILDTPSL 182 (210)
Q Consensus 150 ~~~---~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 182 (210)
.+. .++.+||+++.|++++++++.+.+......
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~ 130 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLAKKGGDV 130 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHhhcCCcE
Confidence 333 589999999999999999999887544333
No 327
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.99 E-value=1.2e-09 Score=75.94 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=43.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
+++++|.+|+|||||+|+|++.........++.+.....+.++. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999887765555666666666666654 4799999995
No 328
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.7e-08 Score=78.98 Aligned_cols=156 Identities=19% Similarity=0.212 Sum_probs=93.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCC--------CC--CceeeeEEEEEEECCeEEEEEEEeCCCcccc--------
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEEL--------SP--TIGVDFKVKYVDVGGKKLKLAIWDTAGQERF-------- 75 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------- 75 (210)
.|.+.++|++|.|||||+|.|+...+... .+ +.........+.-+|..+.++++||||....
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 49999999999999999999987754322 11 2233333444444778889999999992211
Q ss_pred ----------cc-------chhhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329 76 ----------RT-------LTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 76 ----------~~-------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 136 (210)
+. ..+..+. .+|+++|.+..+.. .+..+.-.+...+ ...+++|-|+.|+|.....
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l-----~~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKL-----SKKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHH-----hccccccceeeccccCCHH
Confidence 10 1111122 57999999997753 1222211122222 2357788888899985443
Q ss_pred ee--cHHHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 137 VV--TKKEGINFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 137 ~~--~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
.. ....+......+++++|....-.. ++-+....+.+..
T Consensus 175 El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~ 215 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKS 215 (366)
T ss_pred HHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhh
Confidence 32 334455666667788776665544 3334444444433
No 329
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.98 E-value=1.5e-09 Score=77.78 Aligned_cols=56 Identities=27% Similarity=0.347 Sum_probs=46.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (210)
..++++++|.||+|||||+|+|.+.......+.+++|.....+..+. .+.++|+||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 35899999999999999999999888767777788887766666543 478999998
No 330
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.96 E-value=1.3e-09 Score=83.36 Aligned_cols=79 Identities=23% Similarity=0.170 Sum_probs=50.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE--EEEEEECCe---------------EEEEEEEeCCCccccc---
Q 028329 17 LLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK--VKYVDVGGK---------------KLKLAIWDTAGQERFR--- 76 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------~~~~~l~D~~g~~~~~--- 76 (210)
|+++|.||||||||+|+|++... .....+++|.. .-.+.+.+. ...+.++|+||...-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 57899999999999999998765 22222222222 222222222 2358999999943211
Q ss_pred ----cchhhcccCccEEEEEEeCC
Q 028329 77 ----TLTSSYYRGAQGIIMVYDVT 96 (210)
Q Consensus 77 ----~~~~~~~~~~d~~i~v~d~~ 96 (210)
......++.+|++++|+|+.
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 12233467899999999974
No 331
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.96 E-value=2.5e-09 Score=75.65 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=44.0
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (210)
..++|+++|.||+|||||+|+|.+.......+.++.|.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 35789999999999999999999887766667777776655555432 267889998
No 332
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.95 E-value=2e-08 Score=78.15 Aligned_cols=138 Identities=18% Similarity=0.274 Sum_probs=84.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-----------CCCceeeeEEEEEEECCeEEEEEEEeCCCccccc---cc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----------SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR---TL 78 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---~~ 78 (210)
-.++|+++|++|+|||||+|.|++...... .++.....+...+.-++....++++||||....- ..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 469999999999999999999997643221 1122333344444557788899999999932111 01
Q ss_pred hhh-----------c------------c--cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 79 TSS-----------Y------------Y--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 79 ~~~-----------~------------~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
|.. + + ..+|+++|.+..+.. .+..+.-.....+ ...+.+|-|+.|+|.-
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~l-----s~~vNlIPVI~KaD~l 175 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRL-----SKRVNLIPVIAKADTL 175 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHH-----hcccCeeeeeeccccC
Confidence 110 1 1 247999999997743 2222221122222 2347788889999985
Q ss_pred CCc--eecHHHHHHHHHHhCCcEEE
Q 028329 134 SER--VVTKKEGINFAREYGCLFIE 156 (210)
Q Consensus 134 ~~~--~~~~~~~~~~~~~~~~~~~~ 156 (210)
... ..-.+.+......+.+++|.
T Consensus 176 T~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 176 TDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CHHHHHHHHHHHHHHHHHhCCceeC
Confidence 333 23344556666677888775
No 333
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.94 E-value=2.9e-09 Score=75.25 Aligned_cols=95 Identities=15% Similarity=0.088 Sum_probs=64.8
Q ss_pred ccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEE
Q 028329 76 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFI 155 (210)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
+.++...++++|++++|+|++++...... . +...+. ..+.|+++|+||+|+...... .....+....+.+++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~-l~~~~~----~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~ 74 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-K-LERYVL----ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVV 74 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-H-HHHHHH----hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEE
Confidence 44566777889999999999876543221 1 222222 235899999999998533211 111123334567899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHc
Q 028329 156 ECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 156 ~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
.+||+++.|++++++.+.+.+..
T Consensus 75 ~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 75 YVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEEccccccHHHHHHHHHHHHhh
Confidence 99999999999999999887753
No 334
>PRK00098 GTPase RsgA; Reviewed
Probab=98.94 E-value=6.4e-09 Score=81.09 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=66.0
Q ss_pred hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC
Q 028329 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 160 (210)
..+.++|.+++|+|+.++.........|+..+.. .++|+++|+||+|+..... ..+.........+.+++.+||+
T Consensus 76 ~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~ 150 (298)
T PRK00098 76 LIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAK 150 (298)
T ss_pred ceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCC
Confidence 3468999999999999887766665556665543 4689999999999953322 2223344455678899999999
Q ss_pred CCCCHHHHHHHHH
Q 028329 161 TRVNVQQCFEELV 173 (210)
Q Consensus 161 ~~~~i~~~~~~l~ 173 (210)
++.|++++++.+.
T Consensus 151 ~g~gi~~L~~~l~ 163 (298)
T PRK00098 151 EGEGLDELKPLLA 163 (298)
T ss_pred CCccHHHHHhhcc
Confidence 9999999988764
No 335
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=2.1e-08 Score=73.66 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=90.3
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCC--------C-CCC-CceeeeEEEEEEECCeEEEEEEEeCCCcc---------
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFE--------E-LSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQE--------- 73 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~--------~-~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------- 73 (210)
-.|+|.++|.+|.|||||+|.|...+.. . ..+ +.........+.-++...+++++||||..
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 3599999999999999999999754321 1 111 33333333344557778899999999922
Q ss_pred ---------ccccchhh--------cc--cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC-
Q 028329 74 ---------RFRTLTSS--------YY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE- 133 (210)
Q Consensus 74 ---------~~~~~~~~--------~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~- 133 (210)
.|....+. .+ ..+++++|.+..+.. ++-.+.-.++..+-. -+.++-|+-|.|-.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~-----vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE-----VVNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh-----hheeeeeEeeccccc
Confidence 11111111 11 247899999988753 222222213333322 25667777899963
Q ss_pred -CCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHHH
Q 028329 134 -SERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 170 (210)
+++..-.+.++.....+++.+++-.+.+...-+..++
T Consensus 199 leEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN 236 (336)
T KOG1547|consen 199 LEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN 236 (336)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHH
Confidence 3444455566677777888887766655443333333
No 336
>PRK12289 GTPase RsgA; Reviewed
Probab=98.88 E-value=1.4e-08 Score=80.46 Aligned_cols=92 Identities=16% Similarity=0.122 Sum_probs=64.6
Q ss_pred chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEE
Q 028329 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC 157 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
+....+.++|.+++|+|+.++.........|+.... ..++|+++|+||+|+...... +........++++++.+
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI 155 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence 344458899999999999987633322232554442 356899999999999643221 22233345678899999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 028329 158 SAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~ 175 (210)
||+++.|++++++.+...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999888653
No 337
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.85 E-value=2.1e-08 Score=77.79 Aligned_cols=89 Identities=15% Similarity=0.067 Sum_probs=66.3
Q ss_pred hhhcccCccEEEEEEeCCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEE
Q 028329 79 TSSYYRGAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC 157 (210)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
.+..+.++|.+++|+|+.++. ++..+.. |+..+.. .++|+++|+||+|+..... ......+....+.+++.+
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr-~L~~~~~----~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~v 144 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDR-YLVAAEA----AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAV 144 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHH-HHHHHHH----cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEE
Confidence 345588999999999999987 7776666 6665543 4688999999999964421 112233344568899999
Q ss_pred ccCCCCCHHHHHHHHHH
Q 028329 158 SAKTRVNVQQCFEELVL 174 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~ 174 (210)
|++++.|+++++..+..
T Consensus 145 SA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 145 SAKTGEGLDELREYLKG 161 (287)
T ss_pred ECCCCccHHHHHhhhcc
Confidence 99999999998887653
No 338
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=5.1e-08 Score=73.76 Aligned_cols=161 Identities=18% Similarity=0.172 Sum_probs=101.4
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcC----------CC--CCCCC---CceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSD----------NF--EELSP---TIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~----------~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (210)
....++|..+|+.+-|||||...++.. .| ....| ..+.++....+.++...-.+-..|+||+..|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 345699999999999999998877521 11 11111 4455665555555555556677799999888
Q ss_pred ccchhhcccCccEEEEEEeCCCcc---cHHHHHHHHHHHHhhhccCCCC-cEEEEEeCCCCCCCcee---cHHHHHHHHH
Q 028329 76 RTLTSSYYRGAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDC-IKLLVGNKVDKESERVV---TKKEGINFAR 148 (210)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~-piivv~nK~D~~~~~~~---~~~~~~~~~~ 148 (210)
-.....-..+.|+.|+|+++.+.. +-+.+. +.++ -.+ .++++.||+|+.+.... -..+++.+..
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-----larq----vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs 159 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHIL-----LARQ----VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-----hhhh----cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHH
Confidence 877767777889999999999853 333331 1121 234 45677799999764332 3345667777
Q ss_pred HhCCc-----EEEEccCCC-C-------CHHHHHHHHHHHHHcCC
Q 028329 149 EYGCL-----FIECSAKTR-V-------NVQQCFEELVLKILDTP 180 (210)
Q Consensus 149 ~~~~~-----~~~~sa~~~-~-------~i~~~~~~l~~~~~~~~ 180 (210)
.++++ ++.-|+..- + .|.++++.+-..+....
T Consensus 160 ~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe 204 (394)
T COG0050 160 EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE 204 (394)
T ss_pred HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC
Confidence 77654 666665422 2 24555555555444333
No 339
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.82 E-value=1.2e-08 Score=73.24 Aligned_cols=57 Identities=19% Similarity=0.378 Sum_probs=44.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
..++++++|.+|+|||||+++|.+..+....+.++++.....+.++ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4579999999999999999999988776555566666666655554 34789999994
No 340
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.82 E-value=1.8e-08 Score=78.28 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=47.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
...++++++|.||||||||+|+|.+.......+.++.|.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 356899999999999999999999887766677778777766666543 47899999963
No 341
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.81 E-value=1.4e-08 Score=78.34 Aligned_cols=58 Identities=21% Similarity=0.404 Sum_probs=46.8
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
...++++++|.||+|||||+|+|.+.........+++|.....+.++. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 346899999999999999999999887666666777777666666543 4789999996
No 342
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=8.6e-08 Score=79.86 Aligned_cols=145 Identities=14% Similarity=0.169 Sum_probs=86.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeE----------------------------------------
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFK---------------------------------------- 51 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~---------------------------------------- 51 (210)
....||+|.|..++||||++|+++..+.-.....+.+...
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4578999999999999999999975443221111111111
Q ss_pred ----EEEEEECCe-----EEEEEEEeCCCc---cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCC
Q 028329 52 ----VKYVDVGGK-----KLKLAIWDTAGQ---ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQ 119 (210)
Q Consensus 52 ----~~~~~~~~~-----~~~~~l~D~~g~---~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 119 (210)
...+..+.. .-.+.++|.||- ....+-...+...+|++|+|..+.+..+..+.. ++.... ..
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~--Ff~~vs----~~ 260 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ--FFHKVS----EE 260 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH--HHHHhh----cc
Confidence 111111111 114678899983 333344455677899999999987654433332 333322 22
Q ss_pred CCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--------cEEEEccCCC
Q 028329 120 DCIKLLVGNKVDKESERVVTKKEGINFAREYGC--------LFIECSAKTR 162 (210)
Q Consensus 120 ~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~sa~~~ 162 (210)
+..|.|+.||.|.........+++....+.+.+ .++++|++.-
T Consensus 261 KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~ 311 (749)
T KOG0448|consen 261 KPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKEV 311 (749)
T ss_pred CCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccch
Confidence 566778888999876666666666655544432 2788987643
No 343
>PRK12288 GTPase RsgA; Reviewed
Probab=98.80 E-value=5.5e-08 Score=77.13 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=66.7
Q ss_pred cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHHhCCcEEEEccC
Q 028329 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~sa~ 160 (210)
...++|.+++|++++...++..+.. |+.... ..++|.+||+||+|+..... .............+.+++.+||+
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr-~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDR-YLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHH-HHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4577999999999988888887776 665443 34688999999999964321 11223334445678899999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028329 161 TRVNVQQCFEELVLK 175 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~ 175 (210)
++.|++++++++...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999988653
No 344
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.80 E-value=1.9e-08 Score=71.05 Aligned_cols=56 Identities=27% Similarity=0.337 Sum_probs=42.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (210)
...+++++|.+++|||||+++|.+.......++.+.+.....+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 45789999999999999999999776555556667665444333333 588999998
No 345
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.79 E-value=1.3e-08 Score=80.06 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=50.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
..++++++|.||||||||||+|.+.......+.+|.|.....+.++.. +.++||||--
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 348899999999999999999999888778888899999888887665 8899999943
No 346
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.72 E-value=2.6e-08 Score=72.75 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=42.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCC--------CCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNF--------EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (210)
..+++++|.+|+|||||+|+|.+... ......+++|.....+.++. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 36899999999999999999997542 22334667777777776654 478999998
No 347
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.71 E-value=1.7e-07 Score=69.78 Aligned_cols=107 Identities=18% Similarity=0.109 Sum_probs=75.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc-------cccchhhcccCcc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER-------FRTLTSSYYRGAQ 87 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~d 87 (210)
-+|.++|.|.+||||++..|.+.. .+....-+++...+.........++.+.|+||.-+ -........+.|+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 489999999999999999999644 34433344444444444445566788889999321 1224455678899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCc
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI 122 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p 122 (210)
.+++|.|+..+-+-..+.+.-++-+....++.+..
T Consensus 139 li~~vld~~kp~~hk~~ie~eleg~girlnk~pp~ 173 (358)
T KOG1487|consen 139 LIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPN 173 (358)
T ss_pred EEEEEeeccCcccHHHHHHHhhhcceeeccCCCCC
Confidence 99999999999988888776666666655554433
No 348
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.68 E-value=2e-08 Score=73.53 Aligned_cols=124 Identities=17% Similarity=0.150 Sum_probs=87.1
Q ss_pred EEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCC----------cccHHHHHHHHHHHHhhhccCCCCcEE
Q 028329 55 VDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLSDVWAKEIDLYSTNQDCIKL 124 (210)
Q Consensus 55 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~pii 124 (210)
+.++-....+.+.|.+|+..-+..|..++.++-.+++++.++. .+..++... +...+-.+....+-++|
T Consensus 192 ypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkA-LFrTIi~yPWF~nssVI 270 (359)
T KOG0085|consen 192 YPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVI 270 (359)
T ss_pred cCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHH-HHHHHhccccccCCceE
Confidence 3444556678899999999999999999999988888776653 344566666 45555556777889999
Q ss_pred EEEeCCCCCCCc----------------eecHHHHHHHHHHh----C-----C-cEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 125 LVGNKVDKESER----------------VVTKKEGINFAREY----G-----C-LFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 125 vv~nK~D~~~~~----------------~~~~~~~~~~~~~~----~-----~-~~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
+..||.|+.++. ..+.+.++.+..+. + + .-..+.|.+..||.-+|..+.+.+++
T Consensus 271 lFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq 350 (359)
T KOG0085|consen 271 LFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 350 (359)
T ss_pred EEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence 999999984332 22333444444332 2 1 13446688889999999999888765
Q ss_pred C
Q 028329 179 T 179 (210)
Q Consensus 179 ~ 179 (210)
.
T Consensus 351 ~ 351 (359)
T KOG0085|consen 351 L 351 (359)
T ss_pred h
Confidence 4
No 349
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.67 E-value=1.4e-07 Score=75.55 Aligned_cols=95 Identities=23% Similarity=0.228 Sum_probs=67.2
Q ss_pred ccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHH----HHH
Q 028329 72 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGI----NFA 147 (210)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~----~~~ 147 (210)
.+.+..+...+...++++++|+|+.+.... |...+.... .+.|+++|+||+|+.... ...+... .++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s------~~~~l~~~~--~~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~ 120 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS------LIPELKRFV--GGNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRA 120 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCC------ccHHHHHHh--CCCCEEEEEEchhhCCCC-CCHHHHHHHHHHHH
Confidence 456667777778899999999999775421 334444332 257899999999985432 2233333 335
Q ss_pred HHhCC---cEEEEccCCCCCHHHHHHHHHHH
Q 028329 148 REYGC---LFIECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 148 ~~~~~---~~~~~sa~~~~~i~~~~~~l~~~ 175 (210)
...++ .++.+||+++.|++++++.+.+.
T Consensus 121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 55666 48999999999999999998765
No 350
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.67 E-value=5.8e-08 Score=68.51 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=42.0
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCC
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAG 71 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (210)
....+++++|.+|+|||||+|+|.+.........+++|.....+..+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCC
Confidence 35688999999999999999999987654444445555555545443 3478889998
No 351
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.60 E-value=8.5e-08 Score=72.01 Aligned_cols=159 Identities=16% Similarity=0.032 Sum_probs=92.1
Q ss_pred cccccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCC--CCCceeeeEEEEEEECCeEEEEEEEeCCCc----------cc
Q 028329 7 SQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEEL--SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ----------ER 74 (210)
Q Consensus 7 ~~~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~ 74 (210)
...+.+...+++++|.+|+|||+|++.+...+.... .+.++.+.....+. ....+.+.|.||- ..
T Consensus 129 ~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~y~~~~~~d 205 (320)
T KOG2486|consen 129 EDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH---VGKSWYEVDLPGYGRAGYGFELPAD 205 (320)
T ss_pred ccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee---ccceEEEEecCCcccccCCccCcch
Confidence 334457789999999999999999999986654321 22445444444333 3345777899991 11
Q ss_pred cccchhhcccC---ccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce------e-----cH
Q 028329 75 FRTLTSSYYRG---AQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV------V-----TK 140 (210)
Q Consensus 75 ~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~------~-----~~ 140 (210)
+......++.+ -=-+++++|++.+- .......++++.+ .++|+.+|.||+|....-. . ..
T Consensus 206 ~~~~t~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~ge----~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f 279 (320)
T KOG2486|consen 206 WDKFTKSYLLERENLVRVFLLVDASVPI--QPTDNPEIAWLGE----NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF 279 (320)
T ss_pred HhHhHHHHHHhhhhhheeeeeeeccCCC--CCCChHHHHHHhh----cCCCeEEeeehhhhhhhccccccCccccceeeh
Confidence 11222222221 23455666766442 2222224444544 5799999999999732211 1 11
Q ss_pred HHHHHHHHHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329 141 KEGINFAREYGCLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 141 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 174 (210)
+...........+++.+|+.++.|++.+.-.+.+
T Consensus 280 ~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 280 QGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred hhccccceeccCCceeeecccccCceeeeeehhh
Confidence 1111222223456788999999999887655443
No 352
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.59 E-value=2.3e-07 Score=73.57 Aligned_cols=81 Identities=22% Similarity=0.114 Sum_probs=54.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCC-C-CCCC--CceeeeEEEEEEECC---------------eEEEEEEEeCCCccc-
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNF-E-ELSP--TIGVDFKVKYVDVGG---------------KKLKLAIWDTAGQER- 74 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~-~-~~~~--~~~~~~~~~~~~~~~---------------~~~~~~l~D~~g~~~- 74 (210)
+++.++|.|++|||||++.|++... . ..+| |........ .+.. ....+.+.|+||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v--~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVV--NPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEE--EechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 7899999999999999999998765 2 3334 222222222 2222 124678889999432
Q ss_pred ------cccchhhcccCccEEEEEEeCCC
Q 028329 75 ------FRTLTSSYYRGAQGIIMVYDVTR 97 (210)
Q Consensus 75 ------~~~~~~~~~~~~d~~i~v~d~~~ 97 (210)
........++.+|+++.|+++.+
T Consensus 81 As~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 81 ASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred hhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 22244456789999999999853
No 353
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.56 E-value=1.6e-06 Score=64.88 Aligned_cols=91 Identities=18% Similarity=0.084 Sum_probs=57.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcC--CCCCCCC----CceeeeEEEEEEECCeEEEEEEEeCCCcccccc------ch
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSD--NFEELSP----TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRT------LT 79 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~ 79 (210)
....-|.|+|++++|||+|+|.|.+. .+..... |.|.......... +....+.++||+|...... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence 45678999999999999999999988 5532222 3333332222211 2356799999999543322 12
Q ss_pred hhcccC--ccEEEEEEeCCCcccHHH
Q 028329 80 SSYYRG--AQGIIMVYDVTRRDTFTN 103 (210)
Q Consensus 80 ~~~~~~--~d~~i~v~d~~~~~s~~~ 103 (210)
...+.. ++.+||..+.........
T Consensus 84 ~~~l~~llss~~i~n~~~~~~~~~~~ 109 (224)
T cd01851 84 LFALATLLSSVLIYNSWETILGDDLA 109 (224)
T ss_pred HHHHHHHHhCEEEEeccCcccHHHHH
Confidence 233333 789998888775544333
No 354
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.56 E-value=1.8e-06 Score=68.84 Aligned_cols=156 Identities=15% Similarity=0.208 Sum_probs=92.5
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcC-----------------CCCCCCC-----Cceeee---EEEEEEE-CCeEEEEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSD-----------------NFEELSP-----TIGVDF---KVKYVDV-GGKKLKLAI 66 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~-----------------~~~~~~~-----~~~~~~---~~~~~~~-~~~~~~~~l 66 (210)
.-+=|.++|+..+||||||+||... ..++... |+..-+ ....+.+ ++..+++++
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 3467899999999999999998421 1222111 111001 1233344 567899999
Q ss_pred EeCCCc-------------ccccc-chhh---------------ccc--CccEEEEEEeCC----CcccHHHHHHHHHHH
Q 028329 67 WDTAGQ-------------ERFRT-LTSS---------------YYR--GAQGIIMVYDVT----RRDTFTNLSDVWAKE 111 (210)
Q Consensus 67 ~D~~g~-------------~~~~~-~~~~---------------~~~--~~d~~i~v~d~~----~~~s~~~~~~~~~~~ 111 (210)
+|+.|- ..+-. -|.. .++ ..=++++.-|-+ .++.+....+.....
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 999871 00000 0100 011 112666666644 245666666656666
Q ss_pred HhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC--CCCCHHHHHHHHHH
Q 028329 112 IDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK--TRVNVQQCFEELVL 174 (210)
Q Consensus 112 ~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~--~~~~i~~~~~~l~~ 174 (210)
++. .++|++|+.|-.+.. .....+.+.++..+++++++.+++. +..+|..++..++-
T Consensus 176 Lk~----igKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 176 LKE----IGKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLY 234 (492)
T ss_pred HHH----hCCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHh
Confidence 654 679999999998853 3345556677788899998888774 34455555555443
No 355
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.55 E-value=5.3e-07 Score=63.76 Aligned_cols=91 Identities=13% Similarity=0.031 Sum_probs=57.6
Q ss_pred hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccC
Q 028329 81 SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 160 (210)
..+..+|++++|+|++++.... ... +...+.. ...++|+++|+||+|+...... ......+........+.+||+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~-~~~-i~~~l~~--~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTR-CKH-VEEYLKK--EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred HhhhhCCEEEEEEECCCCcccc-CHH-HHHHHHh--ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence 3467899999999999874321 111 3333332 1345899999999999533221 111122222222335789999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028329 161 TRVNVQQCFEELVLKI 176 (210)
Q Consensus 161 ~~~~i~~~~~~l~~~~ 176 (210)
.+.|++++++.+...+
T Consensus 79 ~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 79 NPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999987764
No 356
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=8.3e-08 Score=73.03 Aligned_cols=167 Identities=16% Similarity=0.161 Sum_probs=105.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------CceeeeEEEEEE-E---------------------------
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP------TIGVDFKVKYVD-V--------------------------- 57 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~------~~~~~~~~~~~~-~--------------------------- 57 (210)
.-.++|.-+|+..-||||+++.+.+-....... +....+....++ .
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 356999999999999999999886532110000 110001000000 0
Q ss_pred --CC---eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCc----ccHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028329 58 --GG---KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----DTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128 (210)
Q Consensus 58 --~~---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~piivv~n 128 (210)
.+ ---.+.|.|.||++-..+....-..-.|++++++..+.. ++-+.+.. ++.+ .-..++++-|
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa-----veiM---~LkhiiilQN 187 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA-----VEIM---KLKHIIILQN 187 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH-----HHHh---hhceEEEEec
Confidence 00 012467889999887766655555556888988887753 34444432 2221 1245789999
Q ss_pred CCCCCCCce--ecHHHHHHHHHH---hCCcEEEEccCCCCCHHHHHHHHHHHHHcCCCccccc
Q 028329 129 KVDKESERV--VTKKEGINFARE---YGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEG 186 (210)
Q Consensus 129 K~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~ 186 (210)
|.|+..+.. ...+++..|... .+.+++++||.-.+|++-+.+++...+......+...
T Consensus 188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~ 250 (466)
T KOG0466|consen 188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSP 250 (466)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCC
Confidence 999965443 345556666654 3678999999999999999999998886665555443
No 357
>PRK12289 GTPase RsgA; Reviewed
Probab=98.54 E-value=1.6e-07 Score=74.60 Aligned_cols=57 Identities=26% Similarity=0.299 Sum_probs=39.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCce-------eeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIG-------VDFKVKYVDVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (210)
.++|+|.+|||||||||+|.+..........+ +|.....+.+.+.. .++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 37999999999999999999765444333333 45555555554332 57899997543
No 358
>PRK12288 GTPase RsgA; Reviewed
Probab=98.54 E-value=1.7e-07 Score=74.31 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=38.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCC-------ceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPT-------IGVDFKVKYVDVGGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (210)
.++|+|.+|||||||+|+|.+......... ..+|.....+.+.+.. .++||||...+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 378999999999999999997654332221 1244455555554332 478999976544
No 359
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.54 E-value=6.4e-07 Score=63.20 Aligned_cols=84 Identities=15% Similarity=0.066 Sum_probs=55.0
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHH
Q 028329 87 QGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQ 166 (210)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 166 (210)
|++++|+|+.++.+.... ++.. ......++|+++|+||+|+....... +....+....+..++.+||+++.|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~---~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii~vSa~~~~gi~ 74 (155)
T cd01849 1 DVILEVLDARDPLGTRSP---DIER--VLIKEKGKKLILVLNKADLVPKEVLR-KWLAYLRHSYPTIPFKISATNGQGIE 74 (155)
T ss_pred CEEEEEEeccCCccccCH---HHHH--HHHhcCCCCEEEEEechhcCCHHHHH-HHHHHHHhhCCceEEEEeccCCcChh
Confidence 789999999987655433 2221 11223568999999999985332111 11112222234568999999999999
Q ss_pred HHHHHHHHHH
Q 028329 167 QCFEELVLKI 176 (210)
Q Consensus 167 ~~~~~l~~~~ 176 (210)
++++.+.+..
T Consensus 75 ~L~~~i~~~~ 84 (155)
T cd01849 75 KKESAFTKQT 84 (155)
T ss_pred hHHHHHHHHh
Confidence 9999987654
No 360
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.52 E-value=3.5e-07 Score=70.57 Aligned_cols=85 Identities=22% Similarity=0.215 Sum_probs=56.6
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEE---------------CCeEEEEEEEeCCCcc---
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDV---------------GGKKLKLAIWDTAGQE--- 73 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~D~~g~~--- 73 (210)
..+++.++|.|+||||||.|.|+.... +..+|..+.+-....+.+ .-....++++|++|.-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 568999999999999999999997765 344552222222222222 1234678999998832
Q ss_pred ----ccccchhhcccCccEEEEEEeCCC
Q 028329 74 ----RFRTLTSSYYRGAQGIIMVYDVTR 97 (210)
Q Consensus 74 ----~~~~~~~~~~~~~d~~i~v~d~~~ 97 (210)
.........++.+|+++-|+++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 222233445778999999998764
No 361
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.49 E-value=8.6e-06 Score=56.65 Aligned_cols=148 Identities=18% Similarity=0.251 Sum_probs=79.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCC-Ccc-----------------
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTA-GQE----------------- 73 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-g~~----------------- 73 (210)
...+||++.|+|||||||++.++...--...+.-.| +....+.-++...-|.+.|+. |..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 346899999999999999998886322111122222 444445566777777777776 310
Q ss_pred ----ccc----cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHH
Q 028329 74 ----RFR----TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGIN 145 (210)
Q Consensus 74 ----~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~ 145 (210)
.+. +.....+..+|++ ++|---+..+..- . +...+.. ....+.|++.+.++.+.. + ..+
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks~-~-f~~~ve~-vl~~~kpliatlHrrsr~-P-------~v~ 147 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVI--IIDEIGPMELKSK-K-FREAVEE-VLKSGKPLIATLHRRSRH-P-------LVQ 147 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhccH-H-HHHHHHH-HhcCCCcEEEEEecccCC-h-------HHH
Confidence 011 1112223345654 4565444332222 1 5555554 334567888888877641 1 122
Q ss_pred HHHHhCCcEEEEccCCCCCHHHHHHHHHHHHH
Q 028329 146 FAREYGCLFIECSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 146 ~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 177 (210)
.....+.-++. .+.+|-+.++..++..+-
T Consensus 148 ~ik~~~~v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 148 RIKKLGGVYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred HhhhcCCEEEE---EccchhhHHHHHHHHHhc
Confidence 23333433333 445555577777777653
No 362
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=2.2e-06 Score=67.23 Aligned_cols=151 Identities=20% Similarity=0.205 Sum_probs=92.9
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC------------------------CceeeeEEEEEEE----------
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP------------------------TIGVDFKVKYVDV---------- 57 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~------------------------~~~~~~~~~~~~~---------- 57 (210)
--.+|+.++|.-.+|||||+-.|+.+......- ..+++..-..+.+
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 356899999999999999998887553221110 1111111111111
Q ss_pred CCeEEEEEEEeCCCccccccchhhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 58 GGKKLKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 58 ~~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
+....-++|+|++|+..|.......+. ..|..++|++++..-..-.-. .+-.+. ..++|++|+++|+|+...
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrE--HLgl~~----AL~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTRE--HLGLIA----ALNIPFFVLVTKMDLVDR 318 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHH--HHHHHH----HhCCCeEEEEEeeccccc
Confidence 111235789999999999876665554 358899999988654322111 222222 247999999999998543
Q ss_pred ------------------------ceecHHHHHHHHHHh----CCcEEEEccCCCCCHHHH
Q 028329 136 ------------------------RVVTKKEGINFAREY----GCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 136 ------------------------~~~~~~~~~~~~~~~----~~~~~~~sa~~~~~i~~~ 168 (210)
..-...++...++.. -+|+|-+|+..|+|++-+
T Consensus 319 ~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 319 QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred hhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 122233444444433 246899999999997653
No 363
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=2.1e-06 Score=70.59 Aligned_cols=134 Identities=14% Similarity=0.112 Sum_probs=79.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEE
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 90 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (210)
..++-++++|+||+||||||++|.......... ..| -+ ..+.+..-.+++.++|.+ ... ......-+|.++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-Pi----TvvsgK~RRiTflEcp~D--l~~-miDvaKIaDLVl 138 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-PI----TVVSGKTRRITFLECPSD--LHQ-MIDVAKIADLVL 138 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-ce----EEeecceeEEEEEeChHH--HHH-HHhHHHhhheeE
Confidence 356888999999999999999887543221111 111 01 123567778999999842 222 233455689999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhccCCCCc-EEEEEeCCCCCCCceecHHHHH------HHHHH-hCCcEEEEccC
Q 028329 91 MVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVTKKEGI------NFARE-YGCLFIECSAK 160 (210)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~------~~~~~-~~~~~~~~sa~ 160 (210)
+++|.+-.-..+... ++..+... ..| ++-|+++.|+-....- ...+. .|..- .|+.+|.+|..
T Consensus 139 LlIdgnfGfEMETmE--FLnil~~H----GmPrvlgV~ThlDlfk~~st-Lr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 139 LLIDGNFGFEMETME--FLNILISH----GMPRVLGVVTHLDLFKNPST-LRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred EEeccccCceehHHH--HHHHHhhc----CCCceEEEEeecccccChHH-HHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 999998765554443 44444332 333 4567799998433211 11111 11111 27788888864
No 364
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.45 E-value=2.1e-06 Score=61.30 Aligned_cols=135 Identities=19% Similarity=0.270 Sum_probs=66.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeC-CCc----------------------
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDT-AGQ---------------------- 72 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~g~---------------------- 72 (210)
+|++.|++|+|||||++++...--....+..| +....+.-++...-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~ 78 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL 78 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence 68999999999999999987432111112222 33333444555666666666 221
Q ss_pred cccccchhhcc----cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC-CCCCCceecHHHHHHHH
Q 028329 73 ERFRTLTSSYY----RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV-DKESERVVTKKEGINFA 147 (210)
Q Consensus 73 ~~~~~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~-D~~~~~~~~~~~~~~~~ 147 (210)
+.+.......+ ..+| ++++|---+-.+... . |.+.+....+ .++|++.++.+. +.+ ....+.
T Consensus 79 e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~~~-~-F~~~v~~~l~-s~~~vi~vv~~~~~~~--------~l~~i~ 145 (168)
T PF03266_consen 79 ESFEEIGLPALRNALSSSD--LIVIDEIGKMELKSP-G-FREAVEKLLD-SNKPVIGVVHKRSDNP--------FLEEIK 145 (168)
T ss_dssp HHHHCCCCCCCHHHHHCCH--EEEE---STTCCC-C-H-HHHHHHHHHC-TTSEEEEE--SS--SC--------CHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCC--EEEEeccchhhhcCH-H-HHHHHHHHHc-CCCcEEEEEecCCCcH--------HHHHHH
Confidence 01111111112 2345 788884333211111 1 4455544333 678888877776 432 234455
Q ss_pred HHhCCcEEEEccCCCCCH
Q 028329 148 REYGCLFIECSAKTRVNV 165 (210)
Q Consensus 148 ~~~~~~~~~~sa~~~~~i 165 (210)
...++.+++++..+...+
T Consensus 146 ~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTTSEEEE--TTTCCCH
T ss_pred hCCCcEEEEeChhHHhhH
Confidence 566788999887776654
No 365
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.44 E-value=4.3e-07 Score=68.87 Aligned_cols=57 Identities=28% Similarity=0.327 Sum_probs=38.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------CceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-------TIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (210)
-.++++|.+|||||||+|+|.+........ ...+|.....+.+.+ ..++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence 367899999999999999999764332221 122445555555533 268899996543
No 366
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.44 E-value=1.4e-06 Score=67.37 Aligned_cols=92 Identities=17% Similarity=0.097 Sum_probs=62.7
Q ss_pred chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEE
Q 028329 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC 157 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
.....+..+|++++|+|+.++.+..... +...+ .+.|+++|+||+|+...... ..........+.+++.+
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~~--i~~~l------~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~i 83 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNPM--IDEIR------GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAI 83 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCChh--HHHHH------CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEE
Confidence 4556688999999999998775533321 22222 25789999999998533211 11122233346678999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcC
Q 028329 158 SAKTRVNVQQCFEELVLKILDT 179 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~~~~~~ 179 (210)
|++++.|++++.+.+.+.+.+.
T Consensus 84 Sa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 84 NAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred ECCCcccHHHHHHHHHHHHHHh
Confidence 9999999999999988877543
No 367
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.41 E-value=4e-07 Score=64.00 Aligned_cols=59 Identities=24% Similarity=0.263 Sum_probs=34.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCC------C-CCCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEE------L-SPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (210)
-.++++|++|||||||+|+|.+..... . .....+|.....+.+... ..++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 568899999999999999999764221 1 112233444444555333 3667999965443
No 368
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.41 E-value=4.2e-06 Score=68.68 Aligned_cols=96 Identities=13% Similarity=0.160 Sum_probs=61.6
Q ss_pred EEEEEeCCCc-------------cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329 63 KLAIWDTAGQ-------------ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 63 ~~~l~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK 129 (210)
...+.|+||. +....+..++..+.+++|+|+--..-+..-... -.++. .....+.-.|+|.+|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnV---TDLVs-q~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIV---TDLVS-QMDPHGRRTIFVLTK 488 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhH---HHHHH-hcCCCCCeeEEEEee
Confidence 5788899992 122234566788999999998755443322221 12222 244556677999999
Q ss_pred CCCCCCceecHHHHHHHHHHhCCc-----EEEEccCCC
Q 028329 130 VDKESERVVTKKEGINFAREYGCL-----FIECSAKTR 162 (210)
Q Consensus 130 ~D~~~~~~~~~~~~~~~~~~~~~~-----~~~~sa~~~ 162 (210)
.|+.++...+...++.+....-+| ||.+-.-.|
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG 526 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG 526 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence 999988888888888877654333 565544333
No 369
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=2.8e-07 Score=73.01 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=103.6
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCC-----------------CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDN-----------------FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
+....-+|.++.+-.+||||.-.|++.-. |.......|.++....+.++....++.++||||+
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence 33456789999999999999998875211 1111113466777788888889999999999999
Q ss_pred cccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC
Q 028329 73 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGC 152 (210)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 152 (210)
..++-....+++--|+++.|||++..-.-..+.- |.+ ..+.++|...+.||+|.....-. ..+..+-.++++
T Consensus 113 vdf~leverclrvldgavav~dasagve~qtltv-wrq-----adk~~ip~~~finkmdk~~anfe--~avdsi~ekl~a 184 (753)
T KOG0464|consen 113 VDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTV-WRQ-----ADKFKIPAHCFINKMDKLAANFE--NAVDSIEEKLGA 184 (753)
T ss_pred ceEEEEHHHHHHHhcCeEEEEeccCCcccceeee-ehh-----ccccCCchhhhhhhhhhhhhhhh--hHHHHHHHHhCC
Confidence 9999888899998999999999997765555544 644 34567899999999997433211 123344455666
Q ss_pred c--EEEEccCCCCCH
Q 028329 153 L--FIECSAKTRVNV 165 (210)
Q Consensus 153 ~--~~~~sa~~~~~i 165 (210)
. ...+..-...+.
T Consensus 185 k~l~l~lpi~eak~f 199 (753)
T KOG0464|consen 185 KALKLQLPIGEAKGF 199 (753)
T ss_pred ceEEEEecccccccc
Confidence 5 333444444444
No 370
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=1.4e-06 Score=73.69 Aligned_cols=115 Identities=25% Similarity=0.371 Sum_probs=84.0
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCC------------C---CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDN------------F---EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
.+.+..-+++++.+..=|||||+..|.... | .+...+.|.|...-.+..-...+.+.++|+||+.
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 345566789999999999999999886332 2 2222366666666666665577899999999999
Q ss_pred ccccchhhcccCccEEEEEEeCCCcc---cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329 74 RFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 132 (210)
.|.+......+-+|++++++|+...- +..-+++.|.+ ..-.++|.||+|.
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~---------~~~~~lvinkidr 136 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE---------GLKPILVINKIDR 136 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc---------cCceEEEEehhhh
Confidence 99999999899999999999988653 33333332322 2334899999994
No 371
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.39 E-value=5.4e-07 Score=73.03 Aligned_cols=56 Identities=20% Similarity=0.257 Sum_probs=49.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
.+.|.++|.|||||||+||.|.+.+-..++.|+|.|-+..++.+.. .+.|.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 6999999999999999999999999888888999998888887655 4788999993
No 372
>PRK13796 GTPase YqeH; Provisional
Probab=98.39 E-value=5.4e-07 Score=72.27 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=41.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDN-----FEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQE 73 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (210)
.++.++|.+|||||||+|+|.... .......+|+|.....+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 479999999999999999998543 1123446777787777776543 3688999963
No 373
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.38 E-value=1.2e-06 Score=62.85 Aligned_cols=91 Identities=15% Similarity=0.077 Sum_probs=60.9
Q ss_pred cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q 028329 77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIE 156 (210)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (210)
......+.++|++++|+|++++...... . +...+ .+.|+++|+||+|+...... .....+....+..++.
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~-i~~~~------~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~ 80 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-L-LEKIL------GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLF 80 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-h-hHhHh------cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEE
Confidence 3455668899999999999876543221 1 22221 24688999999998533211 1112223334556899
Q ss_pred EccCCCCCHHHHHHHHHHHHH
Q 028329 157 CSAKTRVNVQQCFEELVLKIL 177 (210)
Q Consensus 157 ~sa~~~~~i~~~~~~l~~~~~ 177 (210)
+|++++.|++++.+.+...+.
T Consensus 81 iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EECCCcccHHHHHHHHHHHHH
Confidence 999999999999999888763
No 374
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=4.5e-06 Score=64.65 Aligned_cols=144 Identities=18% Similarity=0.108 Sum_probs=90.4
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcC----------CC-----CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSD----------NF-----EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (210)
...++|.-+|+..=|||||-..++.- +| .......|.++....+.++...-.+-=.|+||+..|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 34589999999999999998776421 11 1111144556655555555554455556999998887
Q ss_pred cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCce---ecHHHHHHHHHHhCC-
Q 028329 77 TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERV---VTKKEGINFAREYGC- 152 (210)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~---~~~~~~~~~~~~~~~- 152 (210)
.....-....|+.|+|+.++|..--+.-.. +.+-++ -.-..++|.+||.|+.+..+ .-..+++++...+++
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTrEH--lLLArQ---VGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTREH--LLLARQ---VGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchHHH--HHHHHH---cCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 666666677899999999998643222221 111111 11245788889999963332 233456677677654
Q ss_pred ----cEEEEccC
Q 028329 153 ----LFIECSAK 160 (210)
Q Consensus 153 ----~~~~~sa~ 160 (210)
|++.-||.
T Consensus 207 Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 207 GDNTPVIRGSAL 218 (449)
T ss_pred CCCCCeeecchh
Confidence 57776654
No 375
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.38 E-value=5e-06 Score=65.42 Aligned_cols=165 Identities=14% Similarity=0.105 Sum_probs=99.2
Q ss_pred cccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------------Cce--eeeEEEEEEECCe-------------
Q 028329 9 QEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP-------------TIG--VDFKVKYVDVGGK------------- 60 (210)
Q Consensus 9 ~~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-------------~~~--~~~~~~~~~~~~~------------- 60 (210)
++....+.|.+.|+.+.|||||+-.|..+......- ..+ .+.....+.+++.
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 344567899999999999999998887554221110 001 1111122222221
Q ss_pred --------EEEEEEEeCCCccccccchh--hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCC
Q 028329 61 --------KLKLAIWDTAGQERFRTLTS--SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKV 130 (210)
Q Consensus 61 --------~~~~~l~D~~g~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~ 130 (210)
+--+.|.|+.|++.|-+... .+-.+.|-.++++.+++.-+-..-.. +.. ...-+.|++|+.+|+
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH-----Lgi-~~a~~lPviVvvTK~ 265 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH-----LGI-ALAMELPVIVVVTKI 265 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh-----hhh-hhhhcCCEEEEEEec
Confidence 13578889999988776432 23457899999999998765433332 111 113468999999999
Q ss_pred CCCCCceec--HHHHHHHH----------------------HHh---CCcEEEEccCCCCCHHHHHHHHHHHHHcCC
Q 028329 131 DKESERVVT--KKEGINFA----------------------REY---GCLFIECSAKTRVNVQQCFEELVLKILDTP 180 (210)
Q Consensus 131 D~~~~~~~~--~~~~~~~~----------------------~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 180 (210)
|+....... .+++.... -+. =+|+|.+|+.+|+|++- ++.+...+.+++
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl-L~e~f~~Lp~rr 341 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL-LDEFFLLLPKRR 341 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH-HHHHHHhCCccc
Confidence 985432211 11111111 111 24789999999999876 555555555553
No 376
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.38 E-value=8.7e-07 Score=70.97 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=42.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNF-----EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (210)
.++.++|.+|||||||+|+|++... ......+++|.....+.++.. +.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCC
Confidence 4899999999999999999997432 234446777777776665332 56889999543
No 377
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.38 E-value=9.5e-07 Score=61.29 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=52.7
Q ss_pred hhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329 80 SSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
...+..+|++++|+|+.++.+.... . +...+... ..++|+++|+||+|+..+.. ...........+..++.+||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~-~-l~~~l~~~--~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPP-D-LERYVKEV--DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCH-H-HHHHHHhc--cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 3457789999999999987654421 1 33333321 14689999999999854332 22334455566778999999
Q ss_pred CCCCC
Q 028329 160 KTRVN 164 (210)
Q Consensus 160 ~~~~~ 164 (210)
+++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 88753
No 378
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.37 E-value=4.1e-06 Score=65.87 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=54.7
Q ss_pred EEEEEEEeCCCccccccc----hhhc--------ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028329 61 KLKLAIWDTAGQERFRTL----TSSY--------YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~n 128 (210)
.+.+.++||||....... .... -...+..++|+|++... ..+.+ ....... . .+.-+|.|
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~-~~~giIlT 267 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----V-GLTGIILT 267 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----C-CCCEEEEE
Confidence 357899999996543221 1111 12467889999998543 22222 1111111 1 23368999
Q ss_pred CCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 129 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
|.|.... .-.+...+...+.|+..++ +|.+++++
T Consensus 268 KlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 268 KLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 9995432 2245556677799988888 66666664
No 379
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.31 E-value=3.2e-06 Score=59.85 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=37.5
Q ss_pred EEEEEEEeCCCccccccchhh--------cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329 61 KLKLAIWDTAGQERFRTLTSS--------YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 132 (210)
.....++|++|.......... ..-..|.++.++|+............+...+.. .-+|+.||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-------ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-------ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-------CCEEEEecccC
Confidence 356788899996543333322 233579999999976533222111223333332 12689999995
No 380
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.30 E-value=3.4e-06 Score=64.96 Aligned_cols=94 Identities=13% Similarity=0.105 Sum_probs=55.5
Q ss_pred EEEEEEEeCCCccccccchhh-------c-----ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEe
Q 028329 61 KLKLAIWDTAGQERFRTLTSS-------Y-----YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGN 128 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~-------~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~n 128 (210)
.+.+.++||+|.......... . -..+|.+++|+|++-.. ..+.. .....+. .+ +--+|.|
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~~f~~~----~~-~~g~IlT 225 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AKVFNEA----VG-LTGIILT 225 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HHHHHhh----CC-CCEEEEE
Confidence 467899999997554332211 1 12379999999997432 22221 2121111 11 3468999
Q ss_pred CCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHH
Q 028329 129 KVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQC 168 (210)
Q Consensus 129 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 168 (210)
|.|..... ..+..+....+.|+.+++ +|.+++++
T Consensus 226 KlDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 226 KLDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDL 259 (272)
T ss_pred ccCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhC
Confidence 99974332 234555667789988887 66666664
No 381
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.29 E-value=3.7e-06 Score=65.37 Aligned_cols=100 Identities=20% Similarity=0.123 Sum_probs=65.9
Q ss_pred CCCccccc-cchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q 028329 69 TAGQERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFA 147 (210)
Q Consensus 69 ~~g~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~ 147 (210)
+|||..-. ......+..+|++++|+|+.++.+.... . +...+ .+.|+++|.||+|+..... .+....+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~-~-l~~~~------~~kp~iiVlNK~DL~~~~~--~~~~~~~~ 76 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP-M-IDKII------GNKPRLLILNKSDLADPEV--TKKWIEYF 76 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh-h-HHHHh------CCCCEEEEEEchhcCCHHH--HHHHHHHH
Confidence 46653322 2345567889999999999887553322 1 22222 1578999999999853311 11222223
Q ss_pred HHhCCcEEEEccCCCCCHHHHHHHHHHHHHc
Q 028329 148 REYGCLFIECSAKTRVNVQQCFEELVLKILD 178 (210)
Q Consensus 148 ~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 178 (210)
...+.+++.+|++++.|++++.+.+...+.+
T Consensus 77 ~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 77 EEQGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred HHcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 3446778999999999999999988887654
No 382
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.28 E-value=2e-06 Score=64.28 Aligned_cols=73 Identities=21% Similarity=0.191 Sum_probs=50.3
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc-------cHHHHHHH--HHHHHhhhccCCCCcEEEEEeCC
Q 028329 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD-------TFTNLSDV--WAKEIDLYSTNQDCIKLLVGNKV 130 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~--~~~~~~~~~~~~~~piivv~nK~ 130 (210)
..+.++++|.+|+...+..|...+..+.++|+|+..+..+ +-..+.+. +...+=.......+.+|+..||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 4457899999999999999999999999999999987532 11222210 11111111222457889999999
Q ss_pred CC
Q 028329 131 DK 132 (210)
Q Consensus 131 D~ 132 (210)
|+
T Consensus 280 Dl 281 (379)
T KOG0099|consen 280 DL 281 (379)
T ss_pred HH
Confidence 97
No 383
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.28 E-value=7.6e-06 Score=64.32 Aligned_cols=166 Identities=16% Similarity=0.188 Sum_probs=93.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCC-----------------C-------CCceeeeE-------------EEEE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEEL-----------------S-------PTIGVDFK-------------VKYV 55 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~-----------------~-------~~~~~~~~-------------~~~~ 55 (210)
..++|.++|...+|||||+-.|+.+..... . ...+++.. ..++
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 468999999999999999877753321100 0 01111110 1111
Q ss_pred EE-CCeEEEEEEEeCCCccccccchhhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329 56 DV-GGKKLKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 56 ~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 132 (210)
.+ +....-++|+|++|++.|-.....-.. -.|..++++-++..---... +.+.. .....+|++||++|+|+
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTK-----EHLgL-ALaL~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTK-----EHLGL-ALALHVPVFVVVTKIDM 285 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccH-----Hhhhh-hhhhcCcEEEEEEeecc
Confidence 11 222345789999999988765443332 35777888877653211111 11111 12346899999999998
Q ss_pred CCCceecHHHHHHHHH-----------------------------HhCCcEEEEccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028329 133 ESERVVTKKEGINFAR-----------------------------EYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLL 183 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 183 (210)
-....... ..+.+.+ +.-+++|.+|..+|.|++- +...++.+--+++..
T Consensus 286 CPANiLqE-tmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L-LkmFLNlls~R~~~~ 363 (641)
T KOG0463|consen 286 CPANILQE-TMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL-LKMFLNLLSLRRQLN 363 (641)
T ss_pred CcHHHHHH-HHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-HHHHHhhcCcccccc
Confidence 54432221 1111111 1125689999999999875 555566665555544
Q ss_pred ccc
Q 028329 184 AEG 186 (210)
Q Consensus 184 ~~~ 186 (210)
+.+
T Consensus 364 E~~ 366 (641)
T KOG0463|consen 364 END 366 (641)
T ss_pred cCC
Confidence 433
No 384
>PRK14974 cell division protein FtsY; Provisional
Probab=98.25 E-value=7.8e-06 Score=64.58 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=55.3
Q ss_pred EEEEEEeCCCccccccch----hhc--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 62 LKLAIWDTAGQERFRTLT----SSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
..+.++||+|........ ..+ ..+.|.+++|+|+............+... .++ --+|.||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~-------~~~-~giIlTKlD~~~~ 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA-------VGI-DGVILTKVDADAK 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc-------CCC-CEEEEeeecCCCC
Confidence 458999999965432211 111 22578999999987643222211112221 122 3689999997533
Q ss_pred ceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 136 RVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
-- .+...+...+.|+.+++ +|.+++++.
T Consensus 295 ~G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 GG----AALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred cc----HHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 22 34555566789988877 677777754
No 385
>PRK00098 GTPase RsgA; Reviewed
Probab=98.24 E-value=2.9e-06 Score=66.30 Aligned_cols=57 Identities=28% Similarity=0.294 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCc-------eeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTI-------GVDFKVKYVDVGGKKLKLAIWDTAGQER 74 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (210)
..++++|++|||||||+|+|.+.......... .+|.....+.+.+. ..++|+||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 46889999999999999999976543322211 13333444444432 36789999654
No 386
>PRK01889 GTPase RsgA; Reviewed
Probab=98.24 E-value=8.3e-06 Score=65.24 Aligned_cols=85 Identities=11% Similarity=0.007 Sum_probs=56.1
Q ss_pred cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 161 (210)
...++|.+++|+++..+-....+.. ++..... .+++.+||+||+|+........+....+ ..+.+++.+|+++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr-~L~~a~~----~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~ 181 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIER-YLALAWE----SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALD 181 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHH-HHHHHHH----cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCC
Confidence 4678999999999974433333332 4444443 4667799999999964311111111221 3467899999999
Q ss_pred CCCHHHHHHHHH
Q 028329 162 RVNVQQCFEELV 173 (210)
Q Consensus 162 ~~~i~~~~~~l~ 173 (210)
+.|++++..++.
T Consensus 182 g~gl~~L~~~L~ 193 (356)
T PRK01889 182 GEGLDVLAAWLS 193 (356)
T ss_pred CccHHHHHHHhh
Confidence 999999888764
No 387
>PRK13796 GTPase YqeH; Provisional
Probab=98.23 E-value=1e-05 Score=64.95 Aligned_cols=84 Identities=21% Similarity=0.239 Sum_probs=56.7
Q ss_pred ccCcc-EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHH----HHHHHhCC---cE
Q 028329 83 YRGAQ-GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGI----NFAREYGC---LF 154 (210)
Q Consensus 83 ~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~----~~~~~~~~---~~ 154 (210)
+...| .+++|+|+.+...- |...+.... .+.|+++|+||+|+... ....+.+. .++...++ .+
T Consensus 66 i~~~~~lIv~VVD~~D~~~s------~~~~L~~~~--~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~~~~v 136 (365)
T PRK13796 66 IGDSDALVVNVVDIFDFNGS------WIPGLHRFV--GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLRPVDV 136 (365)
T ss_pred hcccCcEEEEEEECccCCCc------hhHHHHHHh--CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCCcCcE
Confidence 34444 99999999875421 444444432 25789999999999543 22222333 33445565 58
Q ss_pred EEEccCCCCCHHHHHHHHHHH
Q 028329 155 IECSAKTRVNVQQCFEELVLK 175 (210)
Q Consensus 155 ~~~sa~~~~~i~~~~~~l~~~ 175 (210)
+.+||+++.|++++++.+.+.
T Consensus 137 ~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 137 VLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999998765
No 388
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.22 E-value=9.8e-06 Score=74.14 Aligned_cols=112 Identities=19% Similarity=0.203 Sum_probs=64.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCC-----C--CceeeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhh
Q 028329 17 LLMIGDSGVGKSSLLLSFTSDNFEELS-----P--TIGVDFKVKYVDVGGKKLKLAIWDTAGQE--------RFRTLTSS 81 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~ 81 (210)
.+|+|++|+||||++..- +..++-.. . ..+.+..+... +.. .-.++|++|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww-f~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW-FTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE-ecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 589999999999999887 33442211 0 12222222222 222 24688999921 12234555
Q ss_pred cc---------cCccEEEEEEeCCCccc-----H----HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 82 YY---------RGAQGIIMVYDVTRRDT-----F----TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 82 ~~---------~~~d~~i~v~d~~~~~s-----~----~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
++ +-.|++|+++|+.+--. . ..++. .+..+.. ......|++|++||+|+...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~-rl~el~~-~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQ-RLQELRE-QLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHH-HHHHHHH-HhCCCCCEEEEEecchhhcC
Confidence 44 24799999999775321 1 12222 2233333 23457999999999998533
No 389
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.21 E-value=3.2e-06 Score=65.68 Aligned_cols=58 Identities=24% Similarity=0.272 Sum_probs=38.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCC-------CceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSP-------TIGVDFKVKYVDVGGKKLKLAIWDTAGQERF 75 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (210)
..++++|++|+|||||+|.|.+........ ...+|.....+..... ..++|+||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 579999999999999999999765432221 1123444444454422 258899997554
No 390
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=3.1e-06 Score=66.87 Aligned_cols=160 Identities=18% Similarity=0.125 Sum_probs=96.0
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCC------------------------------CCCCCCCceeeeEEEEEEECC
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDN------------------------------FEELSPTIGVDFKVKYVDVGG 59 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 59 (210)
+....++++|+|+..+||||+-..+.... .......-+.+...-...+..
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 34567999999999999999866553210 001111222333333334444
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc---cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 136 (210)
..-.+++.|.||+..|......-..++|..++|+++...+ .|+.--+ -.+.........-...|+++||+|-+...
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQ-TREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQ-TREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccc-hhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 5567899999999998887777788899999999986432 2322211 11111111112335678999999964221
Q ss_pred ------eecHHHHHHHHHHhC------CcEEEEccCCCCCHHHHHH
Q 028329 137 ------VVTKKEGINFAREYG------CLFIECSAKTRVNVQQCFE 170 (210)
Q Consensus 137 ------~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~~ 170 (210)
....+....+....| ..++++|..+|.++++..+
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 111222333333333 3499999999999988654
No 391
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=4.9e-05 Score=56.69 Aligned_cols=158 Identities=25% Similarity=0.372 Sum_probs=93.7
Q ss_pred EEEEEEEcCCCC--cHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeE--EEEEEEeCCC-ccccccchhhcccCcc
Q 028329 14 LFKLLMIGDSGV--GKSSLLLSFTSDNFEELSP-TIGVDFKVKYVDVGGKK--LKLAIWDTAG-QERFRTLTSSYYRGAQ 87 (210)
Q Consensus 14 ~~~i~v~G~~~~--GKTtli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~l~D~~g-~~~~~~~~~~~~~~~d 87 (210)
...++++|.+|+ ||.+|+.+|....+..... ...++++-.. ++++. ..+.+.-.+- ++.+-... ....-..
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcishicde~~lpn~-~~a~pl~ 80 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCISHICDEKFLPNA-EIAEPLQ 80 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEeecccchhccCCc-cccccee
Confidence 356789999999 9999999999887754433 3333333222 22221 1122211111 11111111 1123357
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC--------------------------------
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE-------------------------------- 135 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~-------------------------------- 135 (210)
++++|||++....+..+.. |+..-... ..++ .+-++||.|....
T Consensus 81 a~vmvfdlse~s~l~alqd-wl~htdin--sfdi-llcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgise 156 (418)
T KOG4273|consen 81 AFVMVFDLSEKSGLDALQD-WLPHTDIN--SFDI-LLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISE 156 (418)
T ss_pred eEEEEEeccchhhhHHHHh-hccccccc--cchh-heecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccc
Confidence 8999999999988888887 87755432 1222 3567799986211
Q ss_pred ------------ceecHHHHHHHHHHhCCcEEEEccCCC------------CCHHHHHHHHHHHHHc
Q 028329 136 ------------RVVTKKEGINFAREYGCLFIECSAKTR------------VNVQQCFEELVLKILD 178 (210)
Q Consensus 136 ------------~~~~~~~~~~~~~~~~~~~~~~sa~~~------------~~i~~~~~~l~~~~~~ 178 (210)
.-.......+|+.++++.+++.++.+. .|++.+|..+...+..
T Consensus 157 tegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwp 223 (418)
T KOG4273|consen 157 TEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWP 223 (418)
T ss_pred cccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCc
Confidence 001123356788888999999888543 2788888888765543
No 392
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.15 E-value=2e-06 Score=67.79 Aligned_cols=59 Identities=24% Similarity=0.338 Sum_probs=50.6
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (210)
-.+.+++.|+|.|++||||+||+|...........+|.|.....+..+. .+.|.|.||.
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccC---CceeccCCce
Confidence 3578999999999999999999999988888888888888877777655 4788899994
No 393
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.13 E-value=5.2e-06 Score=63.77 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=38.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC------CCCC-CCceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNF------EELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR 76 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (210)
..+++|.+|||||||+|+|..... ++.. ....+|....-+.+.+.. .++||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 567889999999999999986432 2222 133345556666664322 456999976544
No 394
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.11 E-value=1.7e-05 Score=59.97 Aligned_cols=118 Identities=25% Similarity=0.395 Sum_probs=72.7
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCC---CceeeeE--EEEEEECCeEEEEEEEeCCCc-------cccccc--
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSP---TIGVDFK--VKYVDVGGKKLKLAIWDTAGQ-------ERFRTL-- 78 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~l~D~~g~-------~~~~~~-- 78 (210)
-.|+|+.+|..|.|||||+..|.+..+..... .++.... ...+.-.+..+++++.||.|. +.|.+.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 46999999999999999999999877643222 2222222 333344777889999999982 111111
Q ss_pred -----hhhc-------------c--cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329 79 -----TSSY-------------Y--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 79 -----~~~~-------------~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 136 (210)
...+ + ...++++|.+..+. .++..+.......+. ..+.||-++-|.|-....
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld-----skVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD-----SKVNIIPVIAKADTISKE 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh-----hhhhhHHHHHHhhhhhHH
Confidence 1111 1 24688888888774 445555443333333 346667777788865443
No 395
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.10 E-value=5.7e-05 Score=61.47 Aligned_cols=87 Identities=13% Similarity=0.089 Sum_probs=48.7
Q ss_pred EEEEEEEeCCCccccccchhh----c--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 61 KLKLAIWDTAGQERFRTLTSS----Y--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
.+.+.|+||+|.......... . ....|-+++|+|+.-...-..... .+.. . -.+--+|.||.|...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~----~F~~---~-~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAK----AFKD---S-VDVGSVIITKLDGHA 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHH----HHHh---c-cCCcEEEEECccCCC
Confidence 467899999996544322111 1 234688999999875543322222 2221 1 124468999999743
Q ss_pred CceecHHHHHHHHHHhCCcEEEEcc
Q 028329 135 ERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
.- -.+.......+.|+.+++.
T Consensus 254 rg----G~aLs~~~~t~~PI~fig~ 274 (429)
T TIGR01425 254 KG----GGALSAVAATKSPIIFIGT 274 (429)
T ss_pred Cc----cHHhhhHHHHCCCeEEEcC
Confidence 21 1234445566776555543
No 396
>PRK13695 putative NTPase; Provisional
Probab=98.04 E-value=0.00017 Score=51.88 Aligned_cols=80 Identities=11% Similarity=0.012 Sum_probs=43.2
Q ss_pred cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329 82 YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 161 (210)
.+..+++ +++|--.+ .+.....+...+.... ..+.|++++.|+.... .....+....+..++++ +
T Consensus 93 ~l~~~~~--lllDE~~~--~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~-------~~~~~i~~~~~~~i~~~---~ 157 (174)
T PRK13695 93 ALEEADV--IIIDEIGK--MELKSPKFVKAVEEVL-DSEKPVIATLHRRSVH-------PFVQEIKSRPGGRVYEL---T 157 (174)
T ss_pred ccCCCCE--EEEECCCc--chhhhHHHHHHHHHHH-hCCCeEEEEECchhhH-------HHHHHHhccCCcEEEEE---c
Confidence 3445666 67883211 1122222445554433 4568989999885321 12233444456667776 4
Q ss_pred CCCHHHHHHHHHHHH
Q 028329 162 RVNVQQCFEELVLKI 176 (210)
Q Consensus 162 ~~~i~~~~~~l~~~~ 176 (210)
.+|=+++...+++.+
T Consensus 158 ~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 158 PENRDSLPFEILNRL 172 (174)
T ss_pred chhhhhHHHHHHHHH
Confidence 455567777777755
No 397
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=2e-05 Score=65.42 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=82.2
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCCC-----C------------CCCCCceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDNF-----E------------ELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQER 74 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (210)
...-+|.+.-+-.+||||+-++.+...- . +.....+.+...........++.+.++||||+-.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 4566788889999999999988753210 0 1111234444454455555688999999999988
Q ss_pred cccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329 75 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 136 (210)
|.-.....++--|+.|+|+|+...-.-....- |.+.- .-++|.+..+||+|.....
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV-~rQ~~-----ry~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETV-WRQMK-----RYNVPRICFINKMDRMGAS 172 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHH-HHHHH-----hcCCCeEEEEehhhhcCCC
Confidence 88777778888899999999876543333332 44433 2479999999999975443
No 398
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=5.9e-05 Score=60.40 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=72.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCCCCC-C-CC--Cceeee------------------EEEEEEE---------CCeEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDNFEE-L-SP--TIGVDF------------------KVKYVDV---------GGKKL 62 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~~~~-~-~~--~~~~~~------------------~~~~~~~---------~~~~~ 62 (210)
.-.++++|++||||||++..|....... . .. ....+. ......- .....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4578899999999999998886431100 0 00 000000 0000000 11234
Q ss_pred EEEEEeCCCccccccchhh---cc---cCccEEEEEEeCCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 63 KLAIWDTAGQERFRTLTSS---YY---RGAQGIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~---~~---~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
.+.++||+|.......... .+ ....-.++|++++.. +....+...|......-.....-+-=+|.||.|...
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~- 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS- 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence 7889999996654432211 12 223456888888754 333434332322211000000012247889999643
Q ss_pred ceecHHHHHHHHHHhCCcEEEEcc
Q 028329 136 RVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
..-.+..+....+.++.+++.
T Consensus 296 ---~~G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 296 ---NLGGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred ---CccHHHHHHHHHCcCeEEEec
Confidence 333456677777888666654
No 399
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.96 E-value=5e-05 Score=55.66 Aligned_cols=86 Identities=15% Similarity=0.062 Sum_probs=49.0
Q ss_pred EEEEEEeCCCccccccch----hhcc--cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 62 LKLAIWDTAGQERFRTLT----SSYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~----~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
+.+.++||+|........ ..++ ...+-+++|++++....-... ....... .++ -=+|.||.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~---~~~~~~~----~~~-~~lIlTKlDet~- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQ---ALAFYEA----FGI-DGLILTKLDETA- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHH---HHHHHHH----SST-CEEEEESTTSSS-
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHH---HHHHhhc----ccC-ceEEEEeecCCC-
Confidence 458999999965544321 1111 156789999998865432221 2222221 111 247799999642
Q ss_pred ceecHHHHHHHHHHhCCcEEEEcc
Q 028329 136 RVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
..-.+..+....+.|+-.++.
T Consensus 155 ---~~G~~l~~~~~~~~Pi~~it~ 175 (196)
T PF00448_consen 155 ---RLGALLSLAYESGLPISYITT 175 (196)
T ss_dssp ---TTHHHHHHHHHHTSEEEEEES
T ss_pred ---CcccceeHHHHhCCCeEEEEC
Confidence 233456777788888666654
No 400
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.95 E-value=0.00012 Score=56.37 Aligned_cols=93 Identities=22% Similarity=0.136 Sum_probs=67.4
Q ss_pred chhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEE
Q 028329 78 LTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIEC 157 (210)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (210)
+.+....++|-.++|+.+.+|+--......++-.... .++.-+|+.||+|+........++........+.+++.+
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV 147 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH----cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence 4444556688888999988887655555534444443 456668889999997665444345666777889999999
Q ss_pred ccCCCCCHHHHHHHHHH
Q 028329 158 SAKTRVNVQQCFEELVL 174 (210)
Q Consensus 158 sa~~~~~i~~~~~~l~~ 174 (210)
|++++.+++++.+.+..
T Consensus 148 s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 148 SAKNGDGLEELAELLAG 164 (301)
T ss_pred cCcCcccHHHHHHHhcC
Confidence 99999999887776544
No 401
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.91 E-value=0.00021 Score=56.31 Aligned_cols=98 Identities=14% Similarity=0.160 Sum_probs=56.4
Q ss_pred EEEEEEeCCCccccccchhhccc--------CccEEEEEEeCCCcccHHH-HHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329 62 LKLAIWDTAGQERFRTLTSSYYR--------GAQGIIMVYDVTRRDTFTN-LSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~piivv~nK~D~ 132 (210)
+...++++.|-....+....+.. ..|+++-|+|+.+-..... ..+.+...+.. . =+|++||.|+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~----A---D~ivlNK~Dl 157 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF----A---DVIVLNKTDL 157 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh----C---cEEEEecccC
Confidence 45677788885554443333322 3588999999887544332 22323333332 1 2799999999
Q ss_pred CCCceecHHHHHHHHHHh--CCcEEEEccCCCCCHHHHH
Q 028329 133 ESERVVTKKEGINFAREY--GCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~ 169 (210)
..... .+..+...+.. .++++.++. .+.+..+++
T Consensus 158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 158 VDAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 76653 33344455544 356777776 344444333
No 402
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.89 E-value=5.4e-05 Score=52.94 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=35.7
Q ss_pred EEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCC
Q 028329 61 KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D 131 (210)
.+.+.|+|++|... ....++..+|-++++...+-.+.+.-++. ..+ ...-++++||.|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~-------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA---GIM-------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh---hHh-------hhcCEEEEeCCC
Confidence 46789999988542 22347788999999988773332222211 111 123478999987
No 403
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.88 E-value=7.3e-05 Score=53.63 Aligned_cols=82 Identities=16% Similarity=0.157 Sum_probs=43.9
Q ss_pred EEEEEEeCCCccccccc----hhhc--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 62 LKLAIWDTAGQERFRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
..+.++|++|....... ...+ ....+.+++|+|+..... ... +...+.... + ..-+|.||.|....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~-~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVN-QAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHH-HHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 45788999997533221 1111 124899999999864432 222 222222211 2 24577799997433
Q ss_pred ceecHHHHHHHHHHhCCcEE
Q 028329 136 RVVTKKEGINFAREYGCLFI 155 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~ 155 (210)
.. .+...+...+.|+.
T Consensus 155 ~g----~~~~~~~~~~~p~~ 170 (173)
T cd03115 155 GG----AALSIRAVTGKPIK 170 (173)
T ss_pred cc----hhhhhHHHHCcCeE
Confidence 22 23335556666643
No 404
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=8.5e-05 Score=59.62 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=48.1
Q ss_pred EEEEEEeCCCccccccc----hhhcc--cCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 62 LKLAIWDTAGQERFRTL----TSSYY--RGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
+.+.|+||+|....... ....+ ...+.+++|+|++-... .+.. ....+.. .+ +-=+|+||.|...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~--d~~~-i~~~F~~----~~-idglI~TKLDET~- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK--DMIE-IITNFKD----IH-IDGIVFTKFDETA- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH--HHHH-HHHHhcC----CC-CCEEEEEcccCCC-
Confidence 57899999996443221 22222 23577889998753321 1112 2222221 12 2258899999643
Q ss_pred ceecHHHHHHHHHHhCCcEEEEcc
Q 028329 136 RVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
..-.+..++...+.|+..++.
T Consensus 392 ---k~G~iLni~~~~~lPIsyit~ 412 (436)
T PRK11889 392 ---SSGELLKIPAVSSAPIVLMTD 412 (436)
T ss_pred ---CccHHHHHHHHHCcCEEEEeC
Confidence 233456667778888666554
No 405
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00016 Score=58.81 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=70.8
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCC-CCcee-eeE-----------------EEEEE-E-----------CCeE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGV-DFK-----------------VKYVD-V-----------GGKK 61 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~-~~~~~-~~~-----------------~~~~~-~-----------~~~~ 61 (210)
..-.|+++|++|+||||++..|.+....... ...+. +.. -..+. . .-..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 3458999999999999999877642100000 00000 000 00000 0 1122
Q ss_pred EEEEEEeCCCcccccc----chhhcc--cCccEEEEEEeCCC-cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 62 LKLAIWDTAGQERFRT----LTSSYY--RGAQGIIMVYDVTR-RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
..+.++||+|...... ....+. ....-.++|+|++- ......+.. .+.. .+ +-=+|+||.|...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~----~f~~----~~-~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS----AYQG----HG-IHGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH----HhcC----CC-CCEEEEEeeeCCC
Confidence 4678899999554322 111111 22456778889874 333333222 2211 11 2248899999643
Q ss_pred CceecHHHHHHHHHHhCCcEEEEccC
Q 028329 135 ERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~sa~ 160 (210)
..-.+..++...+.++.+++.-
T Consensus 341 ----~~G~~l~~~~~~~lPi~yvt~G 362 (420)
T PRK14721 341 ----SLGIALDAVIRRKLVLHYVTNG 362 (420)
T ss_pred ----CccHHHHHHHHhCCCEEEEECC
Confidence 3334566777888887666543
No 406
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.79 E-value=0.00044 Score=54.52 Aligned_cols=96 Identities=10% Similarity=0.151 Sum_probs=51.0
Q ss_pred EEEEEEeCCCccccccchhhccc--------CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 62 LKLAIWDTAGQERFRTLTSSYYR--------GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
....++++.|.....+....++. ..++++.|+|+.+......-.......+.. --+|+.||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------AD~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------CCEEEEeccccC
Confidence 45677899887655544433321 248899999987533221111112222221 227999999987
Q ss_pred CCceecHHHHHHHHHHhC--CcEEEEccCCCCCHHHHH
Q 028329 134 SERVVTKKEGINFAREYG--CLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~ 169 (210)
... +......+..+ ++++.++ ........+|
T Consensus 164 ~~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 164 GEA----EKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred CHH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 532 34444444443 4566543 3334444444
No 407
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.79 E-value=0.0001 Score=53.26 Aligned_cols=82 Identities=23% Similarity=0.257 Sum_probs=43.8
Q ss_pred EEEEEEEeCCCccccccch--hh---cccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 61 KLKLAIWDTAGQERFRTLT--SS---YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~--~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
.....++++.|........ .. ..-..+.++.|+|+.+-.........+...+.. .=+|+.||.|+...
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-------ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF-------ADVIVLNKIDLVSD 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT--------SEEEEE-GGGHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh-------cCEEEEeccccCCh
Confidence 3566777888855444441 00 012468999999997643333444434455443 12799999998544
Q ss_pred ceecHHHHHHHHHHh
Q 028329 136 RVVTKKEGINFAREY 150 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~ 150 (210)
. ...+......+..
T Consensus 157 ~-~~i~~~~~~ir~l 170 (178)
T PF02492_consen 157 E-QKIERVREMIREL 170 (178)
T ss_dssp H---HHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHH
Confidence 4 2223344444443
No 408
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.75 E-value=0.00066 Score=55.70 Aligned_cols=86 Identities=17% Similarity=0.148 Sum_probs=48.7
Q ss_pred EEEEEEeCCCccccccch----h--hcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 62 LKLAIWDTAGQERFRTLT----S--SYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
..+.++||+|........ . ..+..+|.+++|+|++... .... ....+.. ..+ ..-+|.||.|....
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~-~a~~F~~---~l~-i~gvIlTKlD~~a~ 247 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKN-QAKAFHE---AVG-IGGIIITKLDGTAK 247 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHH-HHHHHHh---cCC-CCEEEEecccCCCc
Confidence 368999999965543221 1 1133578999999987642 2212 1122221 111 23578899996422
Q ss_pred ceecHHHHHHHHHHhCCcEEEEcc
Q 028329 136 RVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
.-.+.......+.|+.+++.
T Consensus 248 ----~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 248 ----GGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred ----ccHHHHHHHHHCcCEEEEec
Confidence 22455666677887665554
No 409
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.72 E-value=0.00013 Score=50.44 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=59.8
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCC
Q 028329 18 LMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR 97 (210)
Q Consensus 18 ~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 97 (210)
+.-|.+|+|||++.-.+...-..........+.. .......+.+.++|+|+.. .......+..+|.++++.+.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence 3457889999998766542211111111111111 0001112678999999743 3344567888999999999874
Q ss_pred cccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 98 RDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 98 ~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
.++..... .+..+... ....++.+|.|+.+..
T Consensus 79 -~s~~~~~~-~l~~l~~~--~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 -TSITDAYA-LIKKLAKQ--LRVLNFRVVVNRAESP 110 (139)
T ss_pred -hHHHHHHH-HHHHHHHh--cCCCCEEEEEeCCCCH
Confidence 34444333 33333322 1345677999999753
No 410
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00048 Score=57.42 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=48.3
Q ss_pred EEEEEEEeCCCccccccchhh---ccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 61 KLKLAIWDTAGQERFRTLTSS---YYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
.+.+.|+|++|.......... .+. .....++|++.+.. ...+.. .++.+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~e----ii~~f~~--~~~~gvILTKlDEt~- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDE----VVRRFAH--AKPQGVVLTKLDETG- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHH----HHHHHHh--hCCeEEEEecCcCcc-
Confidence 467899999996543322110 011 12345677776642 222222 2222211 135579999999632
Q ss_pred ceecHHHHHHHHHHhCCcEEEEccC
Q 028329 136 RVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~sa~ 160 (210)
....+.......+.++.+++.-
T Consensus 499 ---~lG~aLsv~~~~~LPI~yvt~G 520 (559)
T PRK12727 499 ---RFGSALSVVVDHQMPITWVTDG 520 (559)
T ss_pred ---chhHHHHHHHHhCCCEEEEeCC
Confidence 3345677777888887666643
No 411
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.70 E-value=4.2e-05 Score=58.75 Aligned_cols=60 Identities=22% Similarity=0.370 Sum_probs=41.6
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCCCceeeeEEEE-EEECCeEEEEEEEeCCCc
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSDN-----FEELSPTIGVDFKVKY-VDVGGKKLKLAIWDTAGQ 72 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~g~ 72 (210)
...+.+.|+|-||+|||||+|++.... .......+|.|..+.. +.+.. .-.+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~-rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH-RPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc-CCceEEecCCCc
Confidence 456899999999999999999885433 2344446666665554 33333 234778899995
No 412
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.68 E-value=0.00039 Score=56.85 Aligned_cols=86 Identities=16% Similarity=0.132 Sum_probs=48.7
Q ss_pred EEEEEEeCCCccccccchhh----c--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 62 LKLAIWDTAGQERFRTLTSS----Y--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
+.+.++||+|.......... + .-..|.+++|+|+.... .... +...+... .++ .=+|.||.|....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~-~a~~f~~~---v~i-~giIlTKlD~~~~ 254 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVN-TAKTFNER---LGL-TGVVLTKLDGDAR 254 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHH-HHHHHHhh---CCC-CEEEEeCccCccc
Confidence 46899999995443221111 1 22478899999987442 2222 22222221 122 2577999996422
Q ss_pred ceecHHHHHHHHHHhCCcEEEEcc
Q 028329 136 RVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
. -.+.......++|+.++..
T Consensus 255 ~----G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 255 G----GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred c----cHHHHHHHHHCcCEEEEeC
Confidence 2 2366667778888666554
No 413
>PRK10867 signal recognition particle protein; Provisional
Probab=97.64 E-value=0.00047 Score=56.48 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=47.2
Q ss_pred EEEEEEeCCCccccccc----hhhc--ccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCC
Q 028329 62 LKLAIWDTAGQERFRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 135 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 135 (210)
+.+.++||+|....... ...+ .-..+.+++|+|+.... .... ....+.. ..++ .-+|.||.|....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~-~a~~F~~---~~~i-~giIlTKlD~~~r 255 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVN-TAKAFNE---ALGL-TGVILTKLDGDAR 255 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHH-HHHHHHh---hCCC-CEEEEeCccCccc
Confidence 56899999995433221 1111 12467889999986432 2222 2222221 1122 2477799996432
Q ss_pred ceecHHHHHHHHHHhCCcEEEEcc
Q 028329 136 RVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
. -.+.......++|+.+++.
T Consensus 256 g----G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 256 G----GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred c----cHHHHHHHHHCcCEEEEeC
Confidence 2 2356666777888665554
No 414
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.00017 Score=65.20 Aligned_cols=110 Identities=25% Similarity=0.235 Sum_probs=61.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC--CCCC-----CceeeeEEEEEEECCeEEEEEEEeCCCc--------cccccchhh
Q 028329 17 LLMIGDSGVGKSSLLLSFTSDNFE--ELSP-----TIGVDFKVKYVDVGGKKLKLAIWDTAGQ--------ERFRTLTSS 81 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~ 81 (210)
-+|+|++|+||||++..-- ..|+ +... ..+ |..+... .+-.-.++||.|- ......|..
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g-T~~cdww----f~deaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG-TRNCDWW----FTDEAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCC-CcccCcc----cccceEEEcCCcceecccCcchhhHHHHHH
Confidence 4789999999999886543 2221 1111 112 2222211 1224577898882 122334554
Q ss_pred c---------ccCccEEEEEEeCCCccc-----H----HHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 82 Y---------YRGAQGIIMVYDVTRRDT-----F----TNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 82 ~---------~~~~d~~i~v~d~~~~~s-----~----~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
+ .+..|++|+.+|+.+--+ - ..++. -+..+.. ......|++|++||.|+..
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~-RL~El~~-tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRA-RLQELRE-TLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHH-HHHHHHH-hhccCCceEEEEecccccc
Confidence 4 245799999999775211 1 11222 2334443 2345789999999999854
No 415
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.61 E-value=0.00047 Score=43.94 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=44.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccc-hhhcccCccEEEEEEeC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTL-TSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~ 95 (210)
+++.|.+|+||||+...+...-........ .++ .+.++|+++....... .......+|.++++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~---------~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVL---------LID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE---------EEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999999887643211111111 111 6888899976443321 14556678999999987
Q ss_pred CCc
Q 028329 96 TRR 98 (210)
Q Consensus 96 ~~~ 98 (210)
...
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 754
No 416
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.60 E-value=0.0002 Score=55.35 Aligned_cols=106 Identities=12% Similarity=0.205 Sum_probs=66.6
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCc-----------------
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQ----------------- 72 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------------- 72 (210)
...+...++++|++|.|||+++++|.....+. ...... .+.+.....|..
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~~~------------~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDEDAE------------RIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCCCc------------cccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 44567889999999999999999999755332 221111 123333444331
Q ss_pred -------cccccchhhcccCccEEEEEEeCCCc---ccHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329 73 -------ERFRTLTSSYYRGAQGIIMVYDVTRR---DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 73 -------~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~piivv~nK 129 (210)
..........++...+=++++|--+. -+...... ++..++...+.-.+|+|.+|+.
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~-~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQRE-FLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHH-HHHHHHHHhhccCCCeEEeccH
Confidence 11122233456677888999994432 23334444 7777777778889999999864
No 417
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00032 Score=57.42 Aligned_cols=114 Identities=20% Similarity=0.286 Sum_probs=76.1
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcC------------CCCCCC---CCceeeeEEEEEEE----------------CCeE
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSD------------NFEELS---PTIGVDFKVKYVDV----------------GGKK 61 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~------------~~~~~~---~~~~~~~~~~~~~~----------------~~~~ 61 (210)
..-++.++.+..-|||||-..|... .|.... ...+.++.+..+.. ++..
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 3456788899999999999988522 121111 12333443333322 4557
Q ss_pred EEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329 62 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 132 (210)
+-+.++|.||+..+.+...+.++-.|+.++|+|.-+.--.+.-.- +.+.+.. +-+| +++.||.|.
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETV-LrQA~~E----RIkP-vlv~NK~DR 162 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETV-LRQAIAE----RIKP-VLVMNKMDR 162 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHH-HHHHHHh----hccc-eEEeehhhH
Confidence 889999999999999999999999999999999876533222111 3333332 2355 788999996
No 418
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.59 E-value=6.2e-05 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 419
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.59 E-value=0.00068 Score=54.36 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=56.8
Q ss_pred EEEEEEEeCCCccccccch----hhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcE-EEEEeCCCCC
Q 028329 61 KLKLAIWDTAGQERFRTLT----SSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIK-LLVGNKVDKE 133 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~D~~ 133 (210)
.+.+.|+||.|.+.++... ..++. ...-+.+|++++... ..+ ...+..+. .+|+ =+|+||.|..
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dl----kei~~~f~---~~~i~~~I~TKlDET 351 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDL----KEIIKQFS---LFPIDGLIFTKLDET 351 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHH----HHHHHHhc---cCCcceeEEEccccc
Confidence 3578999999977666432 22222 234456677776442 222 22233322 1221 3888999953
Q ss_pred CCceecHHHHHHHHHHhCCcEEEEccCCC--CCHHHH-HHHHHHHHHcCCCc
Q 028329 134 SERVVTKKEGINFAREYGCLFIECSAKTR--VNVQQC-FEELVLKILDTPSL 182 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~--~~i~~~-~~~l~~~~~~~~~~ 182 (210)
-..-.........+.|+-.++.-.+ ++|... -+|+++.+..-...
T Consensus 352 ----~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~~ 399 (407)
T COG1419 352 ----TSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFAN 399 (407)
T ss_pred ----CchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccccc
Confidence 2333455566667777655554332 232221 34566665554433
No 420
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.57 E-value=0.00089 Score=54.94 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=49.8
Q ss_pred EEEEEEEeCCCcccccc----chhhccc---CccEEEEEEeCCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCC
Q 028329 61 KLKLAIWDTAGQERFRT----LTSSYYR---GAQGIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDK 132 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~----~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 132 (210)
.+.+.|+|++|...... ....++. ...-+++|++++-. ..+..+. ..+.. .+. --+|.||.|.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~----~~f~~----~~~-~~vI~TKlDe 369 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIY----KHFSR----LPL-DGLIFTKLDE 369 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHH----HHhCC----CCC-CEEEEecccc
Confidence 35789999999654431 2222333 23466778887643 2222222 22221 111 2588999996
Q ss_pred CCCceecHHHHHHHHHHhCCcEEEEccCC
Q 028329 133 ESERVVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 161 (210)
... ...+..+....+.++.+++.-.
T Consensus 370 t~~----~G~i~~~~~~~~lPv~yit~Gq 394 (424)
T PRK05703 370 TSS----LGSILSLLIESGLPISYLTNGQ 394 (424)
T ss_pred ccc----ccHHHHHHHHHCCCEEEEeCCC
Confidence 422 2346777788899877766543
No 421
>PRK08118 topology modulation protein; Reviewed
Probab=97.54 E-value=7.4e-05 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
-||+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999854
No 422
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.53 E-value=0.00051 Score=47.11 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
-.+++.|++|+|||++++.+.....
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999986543
No 423
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.53 E-value=7e-05 Score=54.42 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.-|+|+|++|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 458899999999999999998643
No 424
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00068 Score=54.32 Aligned_cols=88 Identities=10% Similarity=0.102 Sum_probs=48.1
Q ss_pred EEEEEEEeCCCccccccch----hhccc--CccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 61 KLKLAIWDTAGQERFRTLT----SSYYR--GAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
.+.+.|+||+|........ ..+.. ..+.+++|.+++.. ...+.. ....+. ..+ +--+|.||.|...
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~-i~~~f~----~l~-i~glI~TKLDET~ 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMT-ILPKLA----EIP-IDGFIITKMDETT 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHH-HHHhcC----cCC-CCEEEEEcccCCC
Confidence 3578999999975443321 11221 34666777776322 222222 211111 111 2358899999642
Q ss_pred CceecHHHHHHHHHHhCCcEEEEccC
Q 028329 135 ERVVTKKEGINFAREYGCLFIECSAK 160 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~sa~ 160 (210)
..-.+...+...+.|+..++.-
T Consensus 357 ----~~G~~Lsv~~~tglPIsylt~G 378 (407)
T PRK12726 357 ----RIGDLYTVMQETNLPVLYMTDG 378 (407)
T ss_pred ----CccHHHHHHHHHCCCEEEEecC
Confidence 2334566777888887666643
No 425
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.49 E-value=9.1e-05 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.||+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999865
No 426
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.48 E-value=3.8e-05 Score=60.84 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=55.8
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccc--cchhhcccCcc
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFR--TLTSSYYRGAQ 87 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~~~~~~~~~~d 87 (210)
+....|-|.++|.||+||||+||.|.......+.|.+|.|--=..+. -.-.+-|+|+||..... +.....+ -
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt---LmkrIfLIDcPGvVyps~dset~ivL---k 376 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT---LMKRIFLIDCPGVVYPSSDSETDIVL---K 376 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH---HHhceeEecCCCccCCCCCchHHHHh---h
Confidence 34567999999999999999999999888877777666443111111 22357788999954433 2233333 3
Q ss_pred EEEEEEeCCCccc
Q 028329 88 GIIMVYDVTRRDT 100 (210)
Q Consensus 88 ~~i~v~d~~~~~s 100 (210)
+++-|=.+.+++.
T Consensus 377 GvVRVenv~~pe~ 389 (572)
T KOG2423|consen 377 GVVRVENVKNPED 389 (572)
T ss_pred ceeeeeecCCHHH
Confidence 5566666666643
No 427
>PRK07261 topology modulation protein; Provisional
Probab=97.46 E-value=0.00011 Score=52.75 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
+|+|+|.+|||||||++.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998743
No 428
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.45 E-value=0.00015 Score=53.67 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.7
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
....-|+|+|++|||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35566888999999999999999754
No 429
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.00089 Score=54.36 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=69.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCC-CC----------CCCC------------CceeeeEEEE-E-----EECCeEEEE
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDN-FE----------ELSP------------TIGVDFKVKY-V-----DVGGKKLKL 64 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~-~~----------~~~~------------~~~~~~~~~~-~-----~~~~~~~~~ 64 (210)
...++++|++||||||++..|.... .. +.+. ..+..+.... . .+....+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3568899999999999998886321 00 0000 0000010000 0 001124567
Q ss_pred EEEeCCCcccccc----chhhccc-----CccEEEEEEeCCCcc-cHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCC
Q 028329 65 AIWDTAGQERFRT----LTSSYYR-----GAQGIIMVYDVTRRD-TFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKES 134 (210)
Q Consensus 65 ~l~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 134 (210)
.++||+|...... .+..++. ...-.++|+|++-.. ...... ..+.. .+. -=+|.||.|...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~----~~f~~----~~~-~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL----KAYES----LNY-RRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH----HHhcC----CCC-CEEEEEcccCCC
Confidence 8999999643221 1222221 134578899987653 222222 22211 122 258899999642
Q ss_pred CceecHHHHHHHHHHhCCcEEEEcc
Q 028329 135 ERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
. .-.+...+...+.|+..++.
T Consensus 374 ~----~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 374 F----LGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred C----ccHHHHHHHHHCCCEEEEec
Confidence 2 23356667777888666654
No 430
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.45 E-value=0.00049 Score=39.30 Aligned_cols=44 Identities=23% Similarity=0.219 Sum_probs=26.4
Q ss_pred CccEEEEEEeCCCc--ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCC
Q 028329 85 GAQGIIMVYDVTRR--DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 131 (210)
Q Consensus 85 ~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D 131 (210)
-.++++|++|++.. .+.+.-.. ++..++. ...+.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~-L~~~ik~--~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLS-LFKEIKP--LFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHH-HHHHHHH--HTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHH-HHHHHHH--HcCCCCEEEEEeccC
Confidence 46899999999854 45555555 4555544 245899999999998
No 431
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.43 E-value=0.00011 Score=50.77 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 028329 17 LLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~ 36 (210)
|+++|+||||||||++.|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999974
No 432
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0016 Score=56.76 Aligned_cols=137 Identities=14% Similarity=0.134 Sum_probs=71.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCC-C-C--CceeeeE---------------EEEEE-E-----------CCeEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEEL-S-P--TIGVDFK---------------VKYVD-V-----------GGKKLK 63 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~-~-~--~~~~~~~---------------~~~~~-~-----------~~~~~~ 63 (210)
--|+|+|++||||||.+..|........ . . -...+.+ ...+. . ......
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 4688999999999999988874321100 0 0 0000000 00000 0 112346
Q ss_pred EEEEeCCCccccccc----hhhc--ccCccEEEEEEeCCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCc
Q 028329 64 LAIWDTAGQERFRTL----TSSY--YRGAQGIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESER 136 (210)
Q Consensus 64 ~~l~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~ 136 (210)
+.|+||+|....... .... ....+-.++|+|++-. +.+..+...|.... ..+ +-=+|+||.|....
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~-----~~~-i~glIlTKLDEt~~- 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGA-----GED-VDGCIITKLDEATH- 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcc-----cCC-CCEEEEeccCCCCC-
Confidence 899999994432221 1111 2235667899998743 33333322111100 001 22488999996432
Q ss_pred eecHHHHHHHHHHhCCcEEEEccCC
Q 028329 137 VVTKKEGINFAREYGCLFIECSAKT 161 (210)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~sa~~ 161 (210)
.-.+..+....+.|+.+++.=.
T Consensus 339 ---~G~iL~i~~~~~lPI~yit~GQ 360 (767)
T PRK14723 339 ---LGPALDTVIRHRLPVHYVSTGQ 360 (767)
T ss_pred ---ccHHHHHHHHHCCCeEEEecCC
Confidence 3345666777888876666433
No 433
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.0025 Score=51.56 Aligned_cols=87 Identities=13% Similarity=0.110 Sum_probs=48.3
Q ss_pred EEEEEEEeCCCcccccc----chhhcccC--cc-EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 61 KLKLAIWDTAGQERFRT----LTSSYYRG--AQ-GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~----~~~~~~~~--~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
.+.+.++|++|...... ....++.. .+ -.++|+|++.... .+. ..+..+... -+-=+|+||.|..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~--~~~----~~~~~~~~~--~~~~~I~TKlDet 325 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS--DVK----EIFHQFSPF--SYKTVIFTKLDET 325 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH--HHH----HHHHHhcCC--CCCEEEEEeccCC
Confidence 45789999999654332 11222222 23 5789999886522 222 222222111 1225889999964
Q ss_pred CCceecHHHHHHHHHHhCCcEEEEcc
Q 028329 134 SERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
.. .-.+..++...+.|+..++.
T Consensus 326 ~~----~G~~l~~~~~~~~Pi~yit~ 347 (388)
T PRK12723 326 TC----VGNLISLIYEMRKEVSYVTD 347 (388)
T ss_pred Cc----chHHHHHHHHHCCCEEEEeC
Confidence 32 23456666777888666554
No 434
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.38 E-value=7.9e-05 Score=53.27 Aligned_cols=48 Identities=25% Similarity=0.314 Sum_probs=30.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEE
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLK 63 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (210)
.=+++.|++|||||||++.|.... .-......+|........+|..+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~ 52 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYF 52 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCceeE
Confidence 447888999999999999999765 211113333334444445555443
No 435
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.37 E-value=0.0024 Score=49.15 Aligned_cols=86 Identities=12% Similarity=0.111 Sum_probs=48.9
Q ss_pred EEEEEEEeCCCccccccc----hhhcc--cCccEEEEEEeCCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCC
Q 028329 61 KLKLAIWDTAGQERFRTL----TSSYY--RGAQGIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKE 133 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~ 133 (210)
.+.+.++|++|....... +...+ ...+-+++|+|++.. +..... ...+.. .+ +-=+|.||.|..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~----~~~f~~----~~-~~~~I~TKlDet 224 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI----ITNFKD----IH-IDGIVFTKFDET 224 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH----HHHhCC----CC-CCEEEEEeecCC
Confidence 467899999996543221 22222 245678999998643 222222 222221 12 225889999965
Q ss_pred CCceecHHHHHHHHHHhCCcEEEEcc
Q 028329 134 SERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
.. .-.+..++...+.|+..++.
T Consensus 225 ~~----~G~~l~~~~~~~~Pi~~it~ 246 (270)
T PRK06731 225 AS----SGELLKIPAVSSAPIVLMTD 246 (270)
T ss_pred CC----ccHHHHHHHHHCcCEEEEeC
Confidence 32 33456667777888666654
No 436
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.36 E-value=0.00082 Score=43.79 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=47.1
Q ss_pred EEEEc-CCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeC
Q 028329 17 LLMIG-DSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 95 (210)
Q Consensus 17 i~v~G-~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (210)
|.+.| ..|+||||+...+...-.....+... +..+. .+.+.++|+|+.... .....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~-------~d~d~-~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLL-------IDLDP-QYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEE-------EeCCC-CCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence 55666 56899999987765322111111111 11121 167899999986432 233667789999999987
Q ss_pred CCcccHHHHHH
Q 028329 96 TRRDTFTNLSD 106 (210)
Q Consensus 96 ~~~~s~~~~~~ 106 (210)
+. .++.....
T Consensus 72 ~~-~s~~~~~~ 81 (104)
T cd02042 72 SP-LDLDGLEK 81 (104)
T ss_pred CH-HHHHHHHH
Confidence 64 44555544
No 437
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.35 E-value=0.00023 Score=41.67 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
..+|.|+.|+|||||+..+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988754
No 438
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.34 E-value=0.0016 Score=53.99 Aligned_cols=89 Identities=9% Similarity=0.067 Sum_probs=44.2
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHH
Q 028329 88 GIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQ 167 (210)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 167 (210)
.+|+|=|+=+..-...... +.+.+..+......|+|+|++-+-...-...+......+-...++..+..+.-...-+..
T Consensus 196 ~liLveDLPn~~~~d~~~~-f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK 274 (634)
T KOG1970|consen 196 KLILVEDLPNQFYRDDSET-FREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKK 274 (634)
T ss_pred eEEEeeccchhhhhhhHHH-HHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHH
Confidence 3466666644333332222 555555666677889999887665432221111112222233455555555544444555
Q ss_pred HHHHHHHHHH
Q 028329 168 CFEELVLKIL 177 (210)
Q Consensus 168 ~~~~l~~~~~ 177 (210)
.+..++....
T Consensus 275 ~L~ric~~e~ 284 (634)
T KOG1970|consen 275 FLKRICRIEA 284 (634)
T ss_pred HHHHHHHHhc
Confidence 5555544443
No 439
>PRK04195 replication factor C large subunit; Provisional
Probab=97.33 E-value=0.0028 Score=53.08 Aligned_cols=25 Identities=40% Similarity=0.573 Sum_probs=21.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcCC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.-.+++.|++|+||||+++.+....
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999999998643
No 440
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.33 E-value=0.00015 Score=51.51 Aligned_cols=22 Identities=18% Similarity=0.576 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999855
No 441
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.31 E-value=0.00023 Score=48.90 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57899999999999999999764
No 442
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.00027 Score=52.88 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
-|.++|++|||||||++.+.+-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999987654
No 443
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.30 E-value=0.0023 Score=51.06 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~ 37 (210)
.++.|.-|||||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 567799999999999999753
No 444
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.30 E-value=0.00026 Score=42.65 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~ 37 (210)
|.+.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999854
No 445
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00036 Score=51.17 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
=.++++|++|||||||++.+.+-..
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcC
Confidence 3578999999999999999986654
No 446
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.27 E-value=0.0025 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
-+++.|++||||||.++.|+...
T Consensus 47 iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 45668999999999999998553
No 447
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.24 E-value=0.00031 Score=52.23 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDNFE 40 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~~~ 40 (210)
-++++|++|||||||++-+.+-.-+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 4789999999999999999876543
No 448
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.23 E-value=0.0077 Score=44.88 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=31.9
Q ss_pred hhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCC-CcEEEEEeCCCCC
Q 028329 79 TSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQD-CIKLLVGNKVDKE 133 (210)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~piivv~nK~D~~ 133 (210)
-+...+++|.+++|+|.+. .++..... +........ .++.+|+||.|-.
T Consensus 149 gRg~~~~vD~vivVvDpS~-~sl~taer-----i~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 149 GRGTIEGVDLVIVVVDPSY-KSLRTAER-----IKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccccccCCCEEEEEeCCcH-HHHHHHHH-----HHHHHHHhCCceEEEEEeeccch
Confidence 3445678999999999875 33433332 222222344 7889999999953
No 449
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.22 E-value=0.039 Score=39.19 Aligned_cols=144 Identities=13% Similarity=0.083 Sum_probs=97.4
Q ss_pred ccceEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEE
Q 028329 10 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGI 89 (210)
Q Consensus 10 ~~~~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (210)
+....-.|+++|..+.++..|..++...+-. +. ..+..-. -+|-..+..... ...|.+
T Consensus 11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~~---------~~-l~Vh~a~--------sLPLp~e~~~lR----prIDlI 68 (176)
T PF11111_consen 11 PELNTATILLVGTEEALLQQLAEAMLEEDKE---------FK-LKVHLAK--------SLPLPSENNNLR----PRIDLI 68 (176)
T ss_pred CCcceeEEEEecccHHHHHHHHHHHHhhccc---------ee-EEEEEec--------cCCCcccccCCC----ceeEEE
Confidence 3445789999999999999999999953211 11 1111100 111111112122 238999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEEccCCCCCHHHHH
Q 028329 90 IMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREYGCLFIECSAKTRVNVQQCF 169 (210)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 169 (210)
++++|.....|+..+.. =+..+...--.. -+.++++-........+...++.+++..+.++++.+...+..+...+-
T Consensus 69 VFvinl~sk~SL~~ve~-SL~~vd~~fflG--KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lA 145 (176)
T PF11111_consen 69 VFVINLHSKYSLQSVEA-SLSHVDPSFFLG--KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLA 145 (176)
T ss_pred EEEEecCCcccHHHHHH-HHhhCChhhhcc--ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHH
Confidence 99999999999988877 444443211111 245666666666777888999999999999999999999998888877
Q ss_pred HHHHHHHHc
Q 028329 170 EELVLKILD 178 (210)
Q Consensus 170 ~~l~~~~~~ 178 (210)
+.|++.+.-
T Consensus 146 qRLL~~lqi 154 (176)
T PF11111_consen 146 QRLLRMLQI 154 (176)
T ss_pred HHHHHHHHH
Confidence 777776643
No 450
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.17 E-value=0.00036 Score=47.31 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~~ 38 (210)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998653
No 451
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.17 E-value=0.0014 Score=44.72 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
-|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998653
No 452
>PRK06217 hypothetical protein; Validated
Probab=97.16 E-value=0.00036 Score=50.57 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.+|+|+|.+|||||||.+.|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 453
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.15 E-value=0.00036 Score=47.12 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~ 37 (210)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 454
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.15 E-value=0.00047 Score=47.53 Aligned_cols=21 Identities=43% Similarity=0.738 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~ 37 (210)
|+++|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 688999999999999999864
No 455
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.13 E-value=0.00042 Score=47.96 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.|.|+|++|||||||++.|...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 456
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.13 E-value=0.00042 Score=50.34 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.|+|+|++|||||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999997543
No 457
>PRK03839 putative kinase; Provisional
Probab=97.12 E-value=0.00044 Score=49.92 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
+|+++|.|||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
No 458
>PRK01889 GTPase RsgA; Reviewed
Probab=97.12 E-value=0.00059 Score=54.74 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
-+++++|.+|+|||||++.|.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4789999999999999999987543
No 459
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.11 E-value=0.00062 Score=49.08 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.|+++|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999864
No 460
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.11 E-value=0.0016 Score=42.77 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=54.0
Q ss_pred cCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcc
Q 028329 21 GDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD 99 (210)
Q Consensus 21 G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 99 (210)
+..|+||||+...|...-... .......+.. .... ..+.++|+|+... ......+..+|.++++.+.+. .
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~~-~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~-~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQFG-DDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDL-P 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCCC-CCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCCh-H
Confidence 556799999877664322111 1111111111 1111 1688899998543 233456778999999998764 4
Q ss_pred cHHHHHHHHHHHHhhhccCCCCcEEEEEeC
Q 028329 100 TFTNLSDVWAKEIDLYSTNQDCIKLLVGNK 129 (210)
Q Consensus 100 s~~~~~~~~~~~~~~~~~~~~~piivv~nK 129 (210)
++..... +...++.........+.+|+|+
T Consensus 78 s~~~~~~-~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKR-LLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHH-HHHHHHHcCCCCcCceEEEecC
Confidence 4555554 5555544221213355677764
No 461
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.11 E-value=0.0005 Score=46.74 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNFE 40 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~~ 40 (210)
-.++++|++|+||||++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 36899999999999999999865543
No 462
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.09 E-value=0.00042 Score=49.95 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 463
>PRK14530 adenylate kinase; Provisional
Probab=97.09 E-value=0.00046 Score=51.34 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~ 36 (210)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999863
No 464
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.08 E-value=0.00045 Score=51.98 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=23.4
Q ss_pred cceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 11 FDYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 11 ~~~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.+..++++|+|.+|||||+|+..|+..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 356799999999999999999988754
No 465
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.00045 Score=54.52 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~~ 38 (210)
++++|++|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6788999999999999998654
No 466
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.07 E-value=0.00052 Score=44.95 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 028329 15 FKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~ 35 (210)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999986
No 467
>PRK13949 shikimate kinase; Provisional
Probab=97.05 E-value=0.00056 Score=48.92 Aligned_cols=22 Identities=23% Similarity=0.591 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
+|+++|++||||||+.+.|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988743
No 468
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.05 E-value=0.00066 Score=50.22 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.1
Q ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 12 DYLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 12 ~~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
+...-|+|.|++|||||||++.|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999999853
No 469
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.02 E-value=0.00082 Score=48.44 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
=.++++|++|+|||||++.+.+...
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 4688999999999999999997643
No 470
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.02 E-value=0.00064 Score=50.35 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.2
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
..+.|+|.|++|||||||++.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5688999999999999999998753
No 471
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.02 E-value=0.00056 Score=51.93 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
-++++|+.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367889999999999999975
No 472
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.02 E-value=0.00053 Score=50.31 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~ 37 (210)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999754
No 473
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.01 E-value=0.0061 Score=47.72 Aligned_cols=86 Identities=16% Similarity=0.225 Sum_probs=49.7
Q ss_pred EEEEEEEeCCCccccccc-------hhhcccCcc-----EEEEEEeCCCc-ccHHHHHHHHHHHHhhhccCCCCcEEEEE
Q 028329 61 KLKLAIWDTAGQERFRTL-------TSSYYRGAQ-----GIIMVYDVTRR-DTFTNLSDVWAKEIDLYSTNQDCIKLLVG 127 (210)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~-------~~~~~~~~d-----~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piivv~ 127 (210)
.+.+.|+||+|....... ....+...+ =+++++|++-. +++.+.+. |.+.+.. -=+|.
T Consensus 221 ~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~-F~eav~l--------~GiIl 291 (340)
T COG0552 221 GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI-FNEAVGL--------DGIIL 291 (340)
T ss_pred CCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH-HHHhcCC--------ceEEE
Confidence 357899999994332221 122233333 38888898765 44555544 5554432 14889
Q ss_pred eCCCCCCCceecHHHHHHHHHHhCCcEEEEcc
Q 028329 128 NKVDKESERVVTKKEGINFAREYGCLFIECSA 159 (210)
Q Consensus 128 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 159 (210)
||.|....--+ +..++..+++|+.++-.
T Consensus 292 TKlDgtAKGG~----il~I~~~l~~PI~fiGv 319 (340)
T COG0552 292 TKLDGTAKGGI----ILSIAYELGIPIKFIGV 319 (340)
T ss_pred EecccCCCcce----eeeHHHHhCCCEEEEeC
Confidence 99996433322 23456677888666543
No 474
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.00 E-value=0.0093 Score=42.89 Aligned_cols=86 Identities=19% Similarity=0.132 Sum_probs=58.2
Q ss_pred eEEEEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceec
Q 028329 60 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVT 139 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~ 139 (210)
..+.+.++|+|+... ......+..+|.+++++..+. .+...... +.+.++. .+.|+.+|+|+.|.... .
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~-~~~~l~~----~~~~~~vV~N~~~~~~~---~ 159 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLER-AVELVRH----FGIPVGVVINKYDLNDE---I 159 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHH-HHHHHHH----cCCCEEEEEeCCCCCcc---h
Confidence 456889999997533 233455678999999999884 35555555 4555543 24677899999996432 3
Q ss_pred HHHHHHHHHHhCCcEEE
Q 028329 140 KKEGINFAREYGCLFIE 156 (210)
Q Consensus 140 ~~~~~~~~~~~~~~~~~ 156 (210)
.+++..+....+++++.
T Consensus 160 ~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 160 AEEIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHHHcCCCeEE
Confidence 44566777777887654
No 475
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.99 E-value=0.00063 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999988743
No 476
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.99 E-value=0.00068 Score=48.81 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.6
Q ss_pred EEEEEEEcCCCCcHHHHHHHHh
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~ 35 (210)
--.++++|++|+|||||++.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999886
No 477
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.99 E-value=0.00062 Score=49.34 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 028329 15 FKLLMIGDSGVGKSSLLLSFT 35 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~ 35 (210)
..|+++|++||||||+++.|.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368899999999999999997
No 478
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.99 E-value=0.00069 Score=50.46 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 67899999999999999999754
No 479
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.00029 Score=52.90 Aligned_cols=158 Identities=17% Similarity=0.227 Sum_probs=85.9
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhcccC----cc
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSDNFEELSPTIGVDFKVKYVDV-GGKKLKLAIWDTAGQERFRTLTSSYYRG----AQ 87 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~d 87 (210)
....|++.|..+. ||+|++.....-....++...++..-.-.. ++..-...+|+++|......+..-.++. .=
T Consensus 44 ~E~~I~~~Gn~~~--tt~I~~~FdR~e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~ 121 (363)
T KOG3929|consen 44 FEFFIGSKGNGGK--TTIILRCFDRDEPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTF 121 (363)
T ss_pred ceeEEEEecCCce--eEeehhhcCcccCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhhh
Confidence 3577888886654 999999887665555554444443222222 2234456899999876655544433332 23
Q ss_pred EEEEEEeCCCcccH----HHHHHH------------------HHHHHhhh--------------ccCCCCcEEEEEeCCC
Q 028329 88 GIIMVYDVTRRDTF----TNLSDV------------------WAKEIDLY--------------STNQDCIKLLVGNKVD 131 (210)
Q Consensus 88 ~~i~v~d~~~~~s~----~~~~~~------------------~~~~~~~~--------------~~~~~~piivv~nK~D 131 (210)
.+|++.|.++++.+ +...+- +.+.++.. ++.-++|+++|+.|.|
T Consensus 122 slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsKYD 201 (363)
T KOG3929|consen 122 SLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSKYD 201 (363)
T ss_pred hheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccchh
Confidence 67899999987532 111110 11111111 2234789999999999
Q ss_pred CCCCceecHHH-------HHHHHHHhCCcEEEEccCCCCCHHHHHHHHHH
Q 028329 132 KESERVVTKKE-------GINFAREYGCLFIECSAKTRVNVQQCFEELVL 174 (210)
Q Consensus 132 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 174 (210)
.- .....+. .+..+..+|......|++...-.+.+-+.+..
T Consensus 202 vF--q~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~H 249 (363)
T KOG3929|consen 202 VF--QDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINH 249 (363)
T ss_pred hh--ccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHH
Confidence 63 2222222 34444555666666777744433333333333
No 480
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.0017 Score=51.69 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=33.7
Q ss_pred eEEEEEEEeCCCccccccch-hh-----cccCccEEEEEEeCCCcccHHHHHHHHHHHHh
Q 028329 60 KKLKLAIWDTAGQERFRTLT-SS-----YYRGAQGIIMVYDVTRRDTFTNLSDVWAKEID 113 (210)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~-~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 113 (210)
..+.+.|.||.|........ .. -.-+.|-+|+|+|++-...-+.....+.+.+.
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vd 241 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVD 241 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhc
Confidence 34689999999954433221 11 12357999999999876655444443555554
No 481
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.97 E-value=0.00084 Score=48.01 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.4
Q ss_pred eEEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 13 YLFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 13 ~~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
...-+.|+|.+|||||||++++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3457899999999999999999854
No 482
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.97 E-value=0.0099 Score=42.55 Aligned_cols=84 Identities=7% Similarity=-0.027 Sum_probs=49.1
Q ss_pred EEEEEeCCCccccccchhhcccCccEEEEEEeCCCcccHHHHHHHHHHHHhhhccCCCCcEEEEEeCCCCCCCceecHHH
Q 028329 63 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKE 142 (210)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~ 142 (210)
.+.++|+|+.... .....+..+|.++++++.+.. ++..... +.+.+.. .......++.|+.+..... ..+.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~-~~~~~~~---~~~~~~~iv~N~~~~~~~~--~~~~ 134 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADR-VKGLLEA---LGIKVVGVIVNRVRPDMVE--GGDM 134 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHH-HHHHHHH---cCCceEEEEEeCCcccccc--hhhH
Confidence 6889999975432 244556789999999988753 3444444 4444443 1223467899999864221 1112
Q ss_pred HHHHHHHhCCcEE
Q 028329 143 GINFAREYGCLFI 155 (210)
Q Consensus 143 ~~~~~~~~~~~~~ 155 (210)
...+....+.+++
T Consensus 135 ~~~~~~~~~~~v~ 147 (179)
T cd02036 135 VEDIEEILGVPLL 147 (179)
T ss_pred HHHHHHHhCCCEE
Confidence 2334444566654
No 483
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.95 E-value=0.00077 Score=49.94 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999754
No 484
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.95 E-value=0.00077 Score=49.73 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
=.++++|++|+|||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999999754
No 485
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.95 E-value=0.00077 Score=50.13 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999754
No 486
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.94 E-value=0.00073 Score=50.22 Aligned_cols=21 Identities=48% Similarity=0.713 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
.|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999987
No 487
>PRK08233 hypothetical protein; Provisional
Probab=96.94 E-value=0.00088 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
+-|+|.|.+|||||||.+.|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 67888999999999999999853
No 488
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.93 E-value=0.00082 Score=48.86 Aligned_cols=24 Identities=29% Similarity=0.456 Sum_probs=21.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHhcC
Q 028329 14 LFKLLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 14 ~~~i~v~G~~~~GKTtli~~l~~~ 37 (210)
.-.++++|++|||||||++.|++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 456899999999999999999864
No 489
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.93 E-value=0.00073 Score=50.06 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|+|||||++.+.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999753
No 490
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.93 E-value=0.00098 Score=52.92 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSDNFE 40 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~~~~ 40 (210)
+.++|++||||||+++.+.+-..+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~p 57 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQP 57 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 678999999999999999875543
No 491
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.93 E-value=0.00082 Score=50.70 Aligned_cols=23 Identities=43% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999754
No 492
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.92 E-value=0.00067 Score=50.70 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSD 37 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~ 37 (210)
|.+.|++|||||||++.|.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999999853
No 493
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.92 E-value=0.00087 Score=48.83 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998754
No 494
>PRK14532 adenylate kinase; Provisional
Probab=96.92 E-value=0.00084 Score=48.79 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 028329 16 KLLMIGDSGVGKSSLLLSFTS 36 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~ 36 (210)
+|+++|+|||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999974
No 495
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.92 E-value=0.00086 Score=49.79 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|+|||||++.+.+..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998754
No 496
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.92 E-value=0.00087 Score=49.44 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|+|||||++.+.+..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999754
No 497
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.92 E-value=0.00086 Score=49.75 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 028329 16 KLLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 16 ~i~v~G~~~~GKTtli~~l~~~~ 38 (210)
.++++|++|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999753
No 498
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.91 E-value=0.0011 Score=47.59 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCCC
Q 028329 15 FKLLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 15 ~~i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
=.+.|+|++|+|||||+|-+.+-..
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC
Confidence 4689999999999999999986543
No 499
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.91 E-value=0.0027 Score=46.63 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSDN 38 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~~ 38 (210)
|+|.|++||||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987543
No 500
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.91 E-value=0.00087 Score=48.26 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 028329 17 LLMIGDSGVGKSSLLLSFTSDNF 39 (210)
Q Consensus 17 i~v~G~~~~GKTtli~~l~~~~~ 39 (210)
+.++|++|+|||||++.++...-
T Consensus 31 ~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 31 VFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred EEEECCCCCCHHHHHHHHHhhhc
Confidence 67889999999999999986543
Done!